Query 008105
Match_columns 577
No_of_seqs 839 out of 3228
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 18:14:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.2E-40 4.1E-45 353.1 43.8 446 113-571 80-584 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.1E-36 3.9E-41 322.5 43.0 423 113-547 113-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-27 6.2E-32 237.6 48.3 381 124-551 6-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.3E-27 1.1E-31 235.7 49.8 365 194-569 6-371 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.5E-30 8.6E-35 263.1 25.1 204 136-339 9-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 3.1E-30 1.1E-34 262.4 24.4 186 364-549 28-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 8.2E-25 2.8E-29 226.8 38.5 404 117-530 6-477 (514)
8 3fp2_A TPR repeat-containing p 99.9 4.9E-23 1.7E-27 214.7 37.2 434 116-568 24-493 (537)
9 2y4t_A DNAJ homolog subfamily 99.9 3.2E-22 1.1E-26 203.7 41.1 314 115-460 24-357 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 3E-22 1E-26 203.9 40.9 283 114-426 57-358 (450)
11 2gw1_A Mitochondrial precursor 99.9 6.8E-22 2.3E-26 204.8 36.0 375 115-497 37-479 (514)
12 2xm6_A Protein corresponding t 99.9 1.1E-17 3.9E-22 171.9 52.7 364 136-532 26-433 (490)
13 3fp2_A TPR repeat-containing p 99.9 6.5E-20 2.2E-24 191.1 35.5 397 115-531 57-491 (537)
14 3ieg_A DNAJ homolog subfamily 99.9 6.4E-19 2.2E-23 173.1 39.9 331 116-478 2-351 (359)
15 2xm6_A Protein corresponding t 99.9 2.5E-17 8.6E-22 169.3 52.7 354 115-498 37-434 (490)
16 3ieg_A DNAJ homolog subfamily 99.9 2.1E-18 7.3E-23 169.3 40.6 332 151-514 2-352 (359)
17 2ooe_A Cleavage stimulation fa 99.9 4.2E-17 1.4E-21 169.4 47.5 421 115-568 11-494 (530)
18 3hym_B Cell division cycle pro 99.9 2.6E-18 9E-23 166.7 34.1 199 115-318 20-219 (330)
19 2ooe_A Cleavage stimulation fa 99.8 8.3E-17 2.9E-21 167.2 46.3 389 113-530 42-491 (530)
20 3hym_B Cell division cycle pro 99.8 4.2E-18 1.5E-22 165.2 33.1 295 148-449 18-322 (330)
21 1fch_A Peroxisomal targeting s 99.8 4.3E-18 1.5E-22 168.1 25.7 303 165-492 38-355 (368)
22 1fch_A Peroxisomal targeting s 99.8 1.1E-17 3.8E-22 165.1 27.1 291 126-421 34-354 (368)
23 1xi4_A Clathrin heavy chain; a 99.8 3.3E-15 1.1E-19 161.1 46.3 381 118-558 986-1376(1630)
24 1b89_A Protein (clathrin heavy 99.8 1E-16 3.5E-21 155.5 27.8 374 129-559 15-410 (449)
25 4eqf_A PEX5-related protein; a 99.8 4.4E-17 1.5E-21 160.7 26.1 265 115-386 63-351 (365)
26 4eqf_A PEX5-related protein; a 99.8 1.2E-17 4.1E-22 164.8 21.9 231 223-459 66-308 (365)
27 3cv0_A Peroxisome targeting si 99.8 9.4E-17 3.2E-21 155.5 26.4 234 116-355 20-268 (327)
28 4g1t_A Interferon-induced prot 99.8 1.3E-15 4.4E-20 155.8 33.9 387 150-569 49-462 (472)
29 3cv0_A Peroxisome targeting si 99.8 2.4E-16 8.1E-21 152.6 26.1 266 151-457 20-311 (327)
30 3mkr_A Coatomer subunit epsilo 99.8 5E-16 1.7E-20 147.4 27.3 250 163-426 10-264 (291)
31 1b89_A Protein (clathrin heavy 99.8 6.5E-17 2.2E-21 156.9 21.1 364 115-526 30-412 (449)
32 4g1t_A Interferon-induced prot 99.7 5E-15 1.7E-19 151.4 36.0 392 115-539 49-468 (472)
33 3spa_A Mtrpol, DNA-directed RN 99.7 4.6E-18 1.6E-22 177.6 12.7 151 186-341 126-286 (1134)
34 3mkr_A Coatomer subunit epsilo 99.7 1.4E-15 4.7E-20 144.4 27.5 276 124-418 6-286 (291)
35 1xi4_A Clathrin heavy chain; a 99.7 3.2E-13 1.1E-17 145.9 48.1 375 115-551 1020-1415(1630)
36 3spa_A Mtrpol, DNA-directed RN 99.7 1E-17 3.5E-22 175.0 10.4 119 396-514 126-248 (1134)
37 3e4b_A ALGK; tetratricopeptide 99.7 1.1E-14 3.9E-19 147.3 27.6 347 122-497 8-388 (452)
38 3e4b_A ALGK; tetratricopeptide 99.7 6E-15 2E-19 149.3 23.1 379 158-566 9-421 (452)
39 2pl2_A Hypothetical conserved 99.6 2.4E-14 8.2E-19 129.6 22.3 200 114-319 2-212 (217)
40 3uq3_A Heat shock protein STI1 99.6 3.8E-14 1.3E-18 131.9 24.0 224 117-354 5-234 (258)
41 3uq3_A Heat shock protein STI1 99.6 1.2E-13 4E-18 128.5 25.2 94 434-529 141-234 (258)
42 2pl2_A Hypothetical conserved 99.6 5E-14 1.7E-18 127.5 21.8 198 360-563 3-211 (217)
43 4e6h_A MRNA 3'-END-processing 99.6 2E-11 6.9E-16 127.7 44.3 225 344-572 326-576 (679)
44 1ouv_A Conserved hypothetical 99.6 2.3E-12 8E-17 121.1 32.7 224 116-357 5-252 (273)
45 2ho1_A Type 4 fimbrial biogene 99.6 5.8E-13 2E-17 123.5 27.7 201 117-321 37-238 (252)
46 1ouv_A Conserved hypothetical 99.6 3.5E-12 1.2E-16 119.9 32.6 223 291-531 5-251 (273)
47 2vq2_A PILW, putative fimbrial 99.6 1.1E-12 3.8E-17 119.0 27.7 203 116-321 7-211 (225)
48 4e6h_A MRNA 3'-END-processing 99.6 4.1E-11 1.4E-15 125.4 42.7 427 115-547 64-584 (679)
49 2ho1_A Type 4 fimbrial biogene 99.6 6.6E-13 2.3E-17 123.1 26.1 201 364-568 39-240 (252)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.7E-14 3E-18 130.9 20.3 221 130-356 18-244 (275)
51 2h6f_A Protein farnesyltransfe 99.6 8.4E-13 2.9E-17 129.5 27.3 249 116-372 96-363 (382)
52 1xnf_A Lipoprotein NLPI; TPR, 99.6 9.9E-14 3.4E-18 130.5 20.1 222 164-391 17-244 (275)
53 3u4t_A TPR repeat-containing p 99.6 6.4E-13 2.2E-17 124.7 25.4 234 118-355 4-249 (272)
54 2vq2_A PILW, putative fimbrial 99.6 1.2E-12 4E-17 118.9 26.4 203 362-567 8-212 (225)
55 2q7f_A YRRB protein; TPR, prot 99.6 2.2E-13 7.6E-18 125.5 21.6 203 114-321 20-222 (243)
56 3u4t_A TPR repeat-containing p 99.6 1.4E-12 4.8E-17 122.4 27.2 245 295-544 6-262 (272)
57 2h6f_A Protein farnesyltransfe 99.6 1E-12 3.5E-17 128.9 26.9 249 151-407 96-363 (382)
58 2q7f_A YRRB protein; TPR, prot 99.5 5.2E-13 1.8E-17 123.0 20.8 199 327-530 23-221 (243)
59 4a1s_A PINS, partner of inscut 99.5 8.7E-13 3E-17 132.0 20.1 202 117-319 48-290 (411)
60 3sf4_A G-protein-signaling mod 99.5 6.8E-13 2.3E-17 132.4 19.2 275 114-389 6-334 (406)
61 4a1s_A PINS, partner of inscut 99.5 1.2E-12 4.2E-17 131.0 20.0 119 258-377 49-181 (411)
62 3sf4_A G-protein-signaling mod 99.5 1.7E-12 5.7E-17 129.5 20.1 302 185-518 7-363 (406)
63 3vtx_A MAMA; tetratricopeptide 99.5 1.2E-11 4.1E-16 108.5 22.4 167 116-286 4-170 (184)
64 2ond_A Cleavage stimulation fa 99.5 1E-10 3.4E-15 112.0 30.3 187 379-568 81-272 (308)
65 3ro2_A PINS homolog, G-protein 99.5 1.7E-12 5.9E-17 125.5 18.1 201 118-319 6-250 (338)
66 2ond_A Cleavage stimulation fa 99.5 8.7E-11 3E-15 112.4 29.1 219 134-391 33-270 (308)
67 3ro2_A PINS homolog, G-protein 99.4 2.9E-12 9.9E-17 123.9 18.6 274 262-567 10-333 (338)
68 3ulq_A Response regulator aspa 99.4 2E-11 6.8E-16 120.9 24.5 162 228-389 109-291 (383)
69 3ulq_A Response regulator aspa 99.4 2E-11 7E-16 120.9 24.2 231 333-566 109-368 (383)
70 3vtx_A MAMA; tetratricopeptide 99.4 4.1E-11 1.4E-15 105.1 23.1 167 151-321 4-170 (184)
71 4abn_A Tetratricopeptide repea 99.4 2.4E-11 8.3E-16 123.6 20.9 209 133-347 84-312 (474)
72 3nf1_A KLC 1, kinesin light ch 99.4 4.6E-12 1.6E-16 121.2 14.3 202 364-566 71-307 (311)
73 3nf1_A KLC 1, kinesin light ch 99.4 3.4E-11 1.2E-15 115.1 20.2 242 114-356 24-307 (311)
74 4abn_A Tetratricopeptide repea 99.4 3.8E-11 1.3E-15 122.2 20.8 211 204-420 85-315 (474)
75 1hz4_A MALT regulatory protein 99.3 9.3E-10 3.2E-14 108.4 28.7 300 261-568 18-351 (373)
76 1hz4_A MALT regulatory protein 99.3 8.1E-10 2.8E-14 108.8 28.2 234 120-353 17-279 (373)
77 3as5_A MAMA; tetratricopeptide 99.3 2.4E-10 8.2E-15 99.8 20.8 170 398-571 9-178 (186)
78 3q15_A PSP28, response regulat 99.3 5.4E-10 1.9E-14 110.3 25.3 226 336-565 110-364 (378)
79 3as5_A MAMA; tetratricopeptide 99.3 3.1E-10 1E-14 99.1 20.5 164 118-285 9-172 (186)
80 4gyw_A UDP-N-acetylglucosamine 99.3 1.4E-10 4.8E-15 122.9 21.4 166 116-285 8-173 (723)
81 3q15_A PSP28, response regulat 99.3 8.6E-10 2.9E-14 108.9 25.9 229 298-530 107-364 (378)
82 4i17_A Hypothetical protein; T 99.3 8.8E-10 3E-14 100.2 22.0 201 115-328 5-214 (228)
83 4gyw_A UDP-N-acetylglucosamine 99.2 5.4E-10 1.8E-14 118.4 21.2 166 151-320 8-173 (723)
84 4i17_A Hypothetical protein; T 99.2 2.3E-09 7.8E-14 97.4 22.0 206 150-368 5-220 (228)
85 2uy1_A Cleavage stimulation fa 99.2 1.6E-07 5.6E-12 95.3 35.4 379 130-565 7-412 (493)
86 3edt_B KLC 2, kinesin light ch 99.2 5.1E-10 1.7E-14 105.1 15.6 228 128-356 12-281 (283)
87 3edt_B KLC 2, kinesin light ch 99.1 4.6E-10 1.6E-14 105.4 14.6 228 338-566 12-281 (283)
88 3mv2_B Coatomer subunit epsilo 99.1 3.4E-08 1.2E-12 91.8 25.1 244 124-391 20-282 (310)
89 3mv2_B Coatomer subunit epsilo 99.1 1.2E-07 4E-12 88.3 27.3 144 241-389 85-238 (310)
90 2fo7_A Synthetic consensus TPR 99.1 1E-08 3.5E-13 83.9 17.5 129 119-250 3-131 (136)
91 2uy1_A Cleavage stimulation fa 99.0 4.3E-07 1.5E-11 92.2 32.3 97 117-216 15-118 (493)
92 2fo7_A Synthetic consensus TPR 99.0 1.7E-08 5.7E-13 82.6 18.1 132 434-568 3-134 (136)
93 1qqe_A Vesicular transport pro 99.0 5.2E-09 1.8E-13 99.1 16.5 207 342-565 32-268 (292)
94 1qqe_A Vesicular transport pro 99.0 1.5E-08 5.2E-13 95.8 19.6 193 161-355 46-268 (292)
95 3qky_A Outer membrane assembly 99.0 2E-08 6.8E-13 93.3 18.3 101 115-216 13-126 (261)
96 3urz_A Uncharacterized protein 99.0 2.9E-08 9.9E-13 88.7 18.6 125 193-321 60-186 (208)
97 3urz_A Uncharacterized protein 99.0 2.3E-08 7.7E-13 89.4 17.7 176 117-299 4-197 (208)
98 3rjv_A Putative SEL1 repeat pr 99.0 7.9E-08 2.7E-12 86.1 21.0 177 134-322 3-198 (212)
99 3rjv_A Putative SEL1 repeat pr 99.0 1.1E-07 3.7E-12 85.2 21.2 140 346-495 5-157 (212)
100 3qky_A Outer membrane assembly 99.0 4.8E-08 1.6E-12 90.7 19.3 189 360-569 13-227 (261)
101 3dra_A Protein farnesyltransfe 98.9 1.2E-06 4E-11 82.4 27.8 227 124-355 39-286 (306)
102 2pzi_A Probable serine/threoni 98.9 1.6E-08 5.5E-13 107.6 16.7 172 163-341 402-582 (681)
103 4ga2_A E3 SUMO-protein ligase 98.9 7.7E-09 2.6E-13 87.0 10.2 144 124-271 4-148 (150)
104 2r5s_A Uncharacterized protein 98.9 3.1E-08 1.1E-12 85.8 14.3 161 120-284 9-171 (176)
105 3dra_A Protein farnesyltransfe 98.9 1.8E-06 6.2E-11 81.1 27.1 218 168-390 49-286 (306)
106 3qou_A Protein YBBN; thioredox 98.9 9.3E-08 3.2E-12 90.1 18.5 167 149-319 114-282 (287)
107 2pzi_A Probable serine/threoni 98.9 4.5E-08 1.6E-12 104.1 18.2 173 338-516 402-582 (681)
108 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.6E-07 9E-12 83.5 20.7 185 116-322 3-214 (225)
109 2vsy_A XCC0866; transferase, g 98.9 8E-08 2.7E-12 100.3 19.0 154 130-287 2-158 (568)
110 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.7E-07 9.3E-12 83.4 19.8 186 151-357 3-214 (225)
111 2vsy_A XCC0866; transferase, g 98.8 8.5E-08 2.9E-12 100.1 18.5 153 375-531 2-157 (568)
112 3qou_A Protein YBBN; thioredox 98.8 8.6E-08 2.9E-12 90.3 16.6 166 116-285 116-283 (287)
113 2r5s_A Uncharacterized protein 98.8 5.3E-08 1.8E-12 84.3 13.9 161 155-319 9-171 (176)
114 4ga2_A E3 SUMO-protein ligase 98.8 2.3E-08 7.8E-13 84.0 10.8 142 161-306 6-148 (150)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 1.7E-07 5.9E-12 89.2 17.2 124 335-459 44-182 (307)
116 2ifu_A Gamma-SNAP; membrane fu 98.8 3.4E-07 1.2E-11 87.1 18.2 199 129-354 3-222 (307)
117 3u3w_A Transcriptional activat 98.7 6.9E-06 2.4E-10 77.4 26.1 162 404-565 82-265 (293)
118 3u3w_A Transcriptional activat 98.7 8.7E-06 3E-10 76.7 25.9 208 314-530 33-265 (293)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.7 8.1E-07 2.8E-11 79.3 17.7 129 118-252 7-151 (213)
120 3q7a_A Farnesyltransferase alp 98.7 1.5E-05 5.2E-10 75.6 26.9 184 119-307 56-257 (349)
121 4f3v_A ESX-1 secretion system 98.7 7.1E-07 2.4E-11 81.9 16.2 125 403-530 108-236 (282)
122 1a17_A Serine/threonine protei 98.6 1.1E-06 3.6E-11 74.8 16.3 128 118-248 14-143 (166)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.2E-06 7.4E-11 76.5 18.8 124 193-321 12-150 (213)
124 4gco_A Protein STI-1; structur 98.6 1.1E-06 3.8E-11 71.0 14.9 97 118-216 14-110 (126)
125 3q7a_A Farnesyltransferase alp 98.6 3.1E-05 1.1E-09 73.5 26.2 172 166-342 68-257 (349)
126 4gco_A Protein STI-1; structur 98.6 1.6E-06 5.4E-11 70.1 15.0 97 153-251 14-110 (126)
127 1a17_A Serine/threonine protei 98.6 2.4E-06 8E-11 72.6 17.0 127 154-283 15-143 (166)
128 1na0_A Designed protein CTPR3; 98.6 2E-06 6.8E-11 68.8 15.5 111 117-230 9-119 (125)
129 1na0_A Designed protein CTPR3; 98.6 2.3E-06 7.9E-11 68.4 15.8 98 152-251 9-106 (125)
130 2lni_A Stress-induced-phosphop 98.6 1.5E-06 5.1E-11 70.6 14.6 120 113-235 12-131 (133)
131 2c2l_A CHIP, carboxy terminus 98.6 6.3E-07 2.1E-11 84.1 13.4 98 116-215 3-100 (281)
132 2qfc_A PLCR protein; TPR, HTH, 98.6 1.9E-05 6.5E-10 74.4 23.8 167 363-530 76-265 (293)
133 3gw4_A Uncharacterized protein 98.6 1.2E-06 4.2E-11 77.3 14.5 157 373-530 3-175 (203)
134 2vyi_A SGTA protein; chaperone 98.5 2E-06 6.8E-11 69.5 14.5 119 116-237 11-129 (131)
135 2c2l_A CHIP, carboxy terminus 98.5 4.5E-06 1.6E-10 78.1 18.9 194 361-566 3-199 (281)
136 2qfc_A PLCR protein; TPR, HTH, 98.5 8.4E-06 2.9E-10 76.9 20.7 126 194-319 122-264 (293)
137 3gyz_A Chaperone protein IPGC; 98.5 1.1E-06 3.9E-11 73.3 12.7 94 155-250 39-132 (151)
138 3gyz_A Chaperone protein IPGC; 98.5 1.4E-06 5E-11 72.7 12.9 105 115-223 34-138 (151)
139 4f3v_A ESX-1 secretion system 98.5 2.6E-06 9E-11 78.1 15.6 187 129-321 18-237 (282)
140 1p5q_A FKBP52, FK506-binding p 98.5 1.9E-06 6.6E-11 83.0 15.6 87 188-276 197-283 (336)
141 2e2e_A Formate-dependent nitri 98.5 1.6E-06 5.3E-11 74.9 13.5 122 128-252 21-145 (177)
142 3gw4_A Uncharacterized protein 98.5 1.5E-06 5.1E-11 76.7 13.7 132 188-319 27-174 (203)
143 2vyi_A SGTA protein; chaperone 98.5 3.8E-06 1.3E-10 67.7 15.1 117 152-271 12-128 (131)
144 2lni_A Stress-induced-phosphop 98.5 2.7E-06 9.1E-11 69.1 14.1 97 152-250 16-112 (133)
145 2e2e_A Formate-dependent nitri 98.5 1.7E-06 5.9E-11 74.6 13.3 121 163-286 21-144 (177)
146 2vgx_A Chaperone SYCD; alterna 98.4 9.3E-07 3.2E-11 73.8 10.0 93 155-249 24-116 (148)
147 3dss_A Geranylgeranyl transfer 98.4 0.0002 6.7E-09 67.7 26.7 191 126-321 38-267 (331)
148 1p5q_A FKBP52, FK506-binding p 98.4 4.9E-06 1.7E-10 80.1 16.3 94 223-318 197-291 (336)
149 1elw_A TPR1-domain of HOP; HOP 98.4 1.2E-05 4E-10 63.5 15.6 98 117-216 4-101 (118)
150 3dss_A Geranylgeranyl transfer 98.4 0.00013 4.3E-09 69.0 24.9 137 303-443 40-190 (331)
151 2vgx_A Chaperone SYCD; alterna 98.4 1.8E-06 6.1E-11 72.1 10.9 99 186-286 20-118 (148)
152 2fbn_A 70 kDa peptidylprolyl i 98.4 9.9E-07 3.4E-11 77.8 8.5 96 154-250 40-150 (198)
153 4gcn_A Protein STI-1; structur 98.3 9E-06 3.1E-10 65.7 13.4 97 118-215 9-111 (127)
154 3upv_A Heat shock protein STI1 98.3 1.5E-05 5E-10 64.2 14.5 96 118-215 5-100 (126)
155 1elw_A TPR1-domain of HOP; HOP 98.3 2.1E-05 7.2E-10 61.9 15.2 98 152-251 4-101 (118)
156 3upv_A Heat shock protein STI1 98.3 1.4E-05 4.7E-10 64.3 13.9 98 152-251 4-101 (126)
157 2fbn_A 70 kDa peptidylprolyl i 98.3 9.8E-06 3.3E-10 71.3 13.9 132 117-250 38-185 (198)
158 2kck_A TPR repeat; tetratricop 98.3 1.2E-05 4.1E-10 62.7 12.7 96 118-215 7-105 (112)
159 2dba_A Smooth muscle cell asso 98.3 3.6E-05 1.2E-09 63.6 15.7 113 114-230 25-141 (148)
160 2xcb_A PCRH, regulatory protei 98.3 1.3E-05 4.5E-10 66.1 12.9 99 116-216 17-115 (142)
161 2kck_A TPR repeat; tetratricop 98.3 1.3E-05 4.5E-10 62.5 12.2 100 151-252 5-107 (112)
162 3q49_B STIP1 homology and U bo 98.3 1.4E-05 4.8E-10 65.3 12.7 100 115-216 7-106 (137)
163 1elr_A TPR2A-domain of HOP; HO 98.2 1E-05 3.6E-10 65.1 11.7 108 118-228 5-118 (131)
164 4gcn_A Protein STI-1; structur 98.2 8.8E-06 3E-10 65.7 11.0 108 432-542 8-121 (127)
165 2xcb_A PCRH, regulatory protei 98.2 1.6E-05 5.6E-10 65.6 12.8 95 154-250 20-114 (142)
166 3sz7_A HSC70 cochaperone (SGT) 98.2 1.2E-05 4.1E-10 68.3 12.1 100 430-531 9-108 (164)
167 3q49_B STIP1 homology and U bo 98.2 3.1E-05 1.1E-09 63.1 14.1 98 151-250 8-105 (137)
168 3sz7_A HSC70 cochaperone (SGT) 98.2 3.3E-05 1.1E-09 65.5 14.2 98 116-215 10-107 (164)
169 1elr_A TPR2A-domain of HOP; HO 98.2 2E-05 6.9E-10 63.4 12.3 108 153-263 5-118 (131)
170 1hxi_A PEX5, peroxisome target 98.2 1.5E-05 5.1E-10 63.7 11.2 96 471-568 21-116 (121)
171 4b4t_Q 26S proteasome regulato 98.2 0.00013 4.5E-09 72.8 20.8 197 334-530 11-244 (434)
172 1hxi_A PEX5, peroxisome target 98.2 1.6E-05 5.4E-10 63.6 11.1 96 119-216 19-114 (121)
173 2dba_A Smooth muscle cell asso 98.1 7.2E-05 2.4E-09 61.7 15.0 99 150-251 26-128 (148)
174 3ro3_A PINS homolog, G-protein 98.1 1.9E-05 6.6E-10 66.2 11.5 134 433-566 10-158 (164)
175 4b4t_Q 26S proteasome regulato 98.1 0.00014 4.8E-09 72.6 19.5 57 124-180 11-83 (434)
176 3ro3_A PINS homolog, G-protein 98.1 2.4E-05 8.2E-10 65.6 11.0 96 118-213 10-115 (164)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.3E-05 1.1E-09 77.8 13.7 88 188-277 318-405 (457)
178 2xev_A YBGF; tetratricopeptide 98.1 0.00016 5.5E-09 58.0 15.3 94 121-216 6-105 (129)
179 3k9i_A BH0479 protein; putativ 98.0 1.4E-05 4.7E-10 63.5 7.7 87 129-216 2-90 (117)
180 2xev_A YBGF; tetratricopeptide 98.0 0.0002 6.8E-09 57.5 14.9 95 155-251 5-105 (129)
181 1wao_1 Serine/threonine protei 98.0 1.6E-05 5.4E-10 80.5 9.3 120 124-246 13-134 (477)
182 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00012 4E-09 73.7 14.8 97 222-320 317-414 (457)
183 1ihg_A Cyclophilin 40; ppiase 97.9 8.5E-05 2.9E-09 72.3 13.1 137 119-277 225-361 (370)
184 1wao_1 Serine/threonine protei 97.9 3.2E-05 1.1E-09 78.3 10.0 121 158-281 12-134 (477)
185 1ihg_A Cyclophilin 40; ppiase 97.9 0.00014 4.7E-09 70.8 14.1 137 155-313 226-362 (370)
186 3rkv_A Putative peptidylprolyl 97.9 0.00016 5.3E-09 61.1 12.6 99 117-216 11-126 (162)
187 3k9i_A BH0479 protein; putativ 97.9 2.6E-05 8.7E-10 61.9 6.9 87 444-531 2-90 (117)
188 3rkv_A Putative peptidylprolyl 97.8 0.00024 8.4E-09 59.8 12.8 99 152-251 11-126 (162)
189 3n71_A Histone lysine methyltr 97.8 8.6E-05 2.9E-09 74.7 11.3 125 442-566 319-464 (490)
190 2if4_A ATFKBP42; FKBP-like, al 97.8 5.6E-05 1.9E-09 72.7 9.6 149 117-286 179-328 (338)
191 2if4_A ATFKBP42; FKBP-like, al 97.8 4.2E-05 1.5E-09 73.6 8.8 152 397-570 179-332 (338)
192 2hr2_A Hypothetical protein; a 97.8 0.00025 8.5E-09 58.6 12.0 63 118-180 12-85 (159)
193 2hr2_A Hypothetical protein; a 97.8 0.00016 5.5E-09 59.8 10.7 96 472-567 16-132 (159)
194 1dce_A Protein (RAB geranylger 97.8 0.0015 5.2E-08 67.2 20.4 175 128-307 39-241 (567)
195 1klx_A Cysteine rich protein B 97.8 0.00083 2.8E-08 54.8 14.5 77 167-251 10-90 (138)
196 1dce_A Protein (RAB geranylger 97.7 0.0015 5.2E-08 67.3 19.3 172 378-554 45-243 (567)
197 1klx_A Cysteine rich protein B 97.7 0.0011 3.7E-08 54.1 14.8 111 131-252 9-127 (138)
198 2l6j_A TPR repeat-containing p 97.7 5.2E-05 1.8E-09 59.1 5.3 95 116-212 3-103 (111)
199 2l6j_A TPR repeat-containing p 97.5 0.00013 4.6E-09 56.6 6.1 89 151-242 3-98 (111)
200 3n71_A Histone lysine methyltr 97.5 0.0004 1.4E-08 69.8 10.6 52 338-389 320-378 (490)
201 1na3_A Designed protein CTPR2; 97.5 0.0011 3.7E-08 49.0 10.7 81 117-199 9-89 (91)
202 2kat_A Uncharacterized protein 97.4 0.0011 3.6E-08 52.0 10.4 79 135-215 3-81 (115)
203 1na3_A Designed protein CTPR2; 97.4 0.0012 4E-08 48.9 10.1 63 153-216 10-72 (91)
204 2kat_A Uncharacterized protein 97.4 0.00094 3.2E-08 52.3 9.3 78 171-250 4-81 (115)
205 1zu2_A Mitochondrial import re 97.3 0.00053 1.8E-08 56.5 7.3 95 128-226 13-128 (158)
206 3ma5_A Tetratricopeptide repea 97.2 0.0017 5.9E-08 49.3 8.8 66 115-181 5-70 (100)
207 1zu2_A Mitochondrial import re 97.1 0.001 3.6E-08 54.8 7.2 87 163-251 13-120 (158)
208 3ma5_A Tetratricopeptide repea 97.0 0.0041 1.4E-07 47.2 9.0 63 151-214 6-68 (100)
209 3mkq_A Coatomer beta'-subunit; 96.7 0.093 3.2E-06 56.7 20.5 152 197-387 609-761 (814)
210 3ly7_A Transcriptional activat 96.7 0.033 1.1E-06 52.8 14.3 73 254-330 274-346 (372)
211 3ly7_A Transcriptional activat 96.6 0.023 8E-07 53.8 12.9 72 465-540 275-346 (372)
212 3qww_A SET and MYND domain-con 96.6 0.0071 2.4E-07 59.7 9.7 87 444-530 310-410 (433)
213 2kc7_A BFR218_protein; tetratr 96.6 0.0042 1.4E-07 46.8 6.4 55 475-530 8-63 (99)
214 3mkq_A Coatomer beta'-subunit; 96.5 0.051 1.7E-06 58.8 16.5 43 509-556 756-802 (814)
215 3qwp_A SET and MYND domain-con 96.5 0.017 6E-07 57.0 11.4 94 437-530 292-399 (429)
216 3qww_A SET and MYND domain-con 96.4 0.023 7.8E-07 56.1 11.7 87 409-495 310-410 (433)
217 1pc2_A Mitochondria fission pr 96.3 0.032 1.1E-06 45.4 10.0 87 447-537 13-104 (152)
218 3qwp_A SET and MYND domain-con 96.3 0.049 1.7E-06 53.7 13.4 94 402-495 292-399 (429)
219 3bee_A Putative YFRE protein; 96.2 0.042 1.4E-06 40.8 9.6 67 464-531 3-72 (93)
220 2kc7_A BFR218_protein; tetratr 96.1 0.046 1.6E-06 40.8 9.9 59 123-182 6-65 (99)
221 1pc2_A Mitochondria fission pr 96.0 0.051 1.7E-06 44.2 9.8 82 413-496 14-100 (152)
222 1wy6_A Hypothetical protein ST 96.0 0.41 1.4E-05 37.5 14.2 139 409-569 19-157 (172)
223 3bee_A Putative YFRE protein; 96.0 0.055 1.9E-06 40.2 9.3 67 115-182 4-73 (93)
224 3mkq_B Coatomer subunit alpha; 95.9 0.33 1.1E-05 40.5 14.5 128 406-563 14-141 (177)
225 4h7y_A Dual specificity protei 95.9 0.07 2.4E-06 42.8 9.7 98 431-530 12-122 (161)
226 3u64_A Protein TP_0956; tetrat 95.6 0.16 5.5E-06 46.1 12.4 108 448-565 179-297 (301)
227 2v5f_A Prolyl 4-hydroxylase su 95.6 0.12 4.1E-06 39.2 10.3 66 116-181 4-75 (104)
228 2v5f_A Prolyl 4-hydroxylase su 95.5 0.083 2.8E-06 40.1 9.0 71 465-537 3-79 (104)
229 4h7y_A Dual specificity protei 95.4 0.34 1.2E-05 38.9 11.9 102 114-217 10-124 (161)
230 3mkq_B Coatomer subunit alpha; 95.3 0.58 2E-05 39.0 13.8 101 196-317 14-114 (177)
231 3lvg_A Clathrin heavy chain 1; 94.9 0.0002 6.7E-09 69.2 -9.1 196 114-339 80-275 (624)
232 1nzn_A CGI-135 protein, fissio 94.5 0.24 8.2E-06 38.7 8.9 85 444-530 13-102 (126)
233 1wy6_A Hypothetical protein ST 94.5 1.4 4.6E-05 34.7 16.0 64 328-392 92-155 (172)
234 3u64_A Protein TP_0956; tetrat 94.1 0.51 1.7E-05 42.9 11.4 112 116-227 153-282 (301)
235 1nzn_A CGI-135 protein, fissio 93.9 0.27 9.1E-06 38.4 8.0 85 483-569 17-106 (126)
236 3lvg_A Clathrin heavy chain 1; 93.9 0.0028 9.5E-08 61.4 -3.8 372 115-524 114-534 (624)
237 4ady_A RPN2, 26S proteasome re 93.3 10 0.00036 40.7 31.5 148 409-564 502-656 (963)
238 4ady_A RPN2, 26S proteasome re 90.9 20 0.00067 38.6 32.8 153 371-529 499-656 (963)
239 4b4t_P 26S proteasome regulato 90.2 15 0.00051 36.1 19.9 49 271-319 30-83 (445)
240 2wpv_A GET4, UPF0363 protein Y 89.9 12 0.00041 34.5 20.9 127 124-280 20-157 (312)
241 3o48_A Mitochondria fission 1 89.7 3.7 0.00013 32.2 10.0 74 462-537 35-111 (134)
242 3o48_A Mitochondria fission 1 89.7 5.1 0.00018 31.4 10.7 66 430-495 38-106 (134)
243 1y8m_A FIS1; mitochondria, unk 89.6 6.6 0.00023 31.2 12.0 73 463-537 35-110 (144)
244 4gns_B Protein CSD3, chitin bi 89.3 2.1 7.1E-05 45.0 11.0 63 429-493 610-681 (754)
245 2ff4_A Probable regulatory pro 89.1 5.6 0.00019 38.3 13.4 69 472-541 176-249 (388)
246 1v54_E Cytochrome C oxidase po 89.0 3.1 0.00011 30.7 8.4 63 482-545 25-87 (109)
247 2ff4_A Probable regulatory pro 88.6 1.8 6.3E-05 41.8 9.5 130 113-261 108-249 (388)
248 1y8m_A FIS1; mitochondria, unk 88.2 8.4 0.00029 30.6 11.9 68 429-496 36-106 (144)
249 4fhn_B Nucleoporin NUP120; pro 87.9 14 0.00048 41.4 17.3 88 257-346 899-990 (1139)
250 3ffl_A Anaphase-promoting comp 87.1 5 0.00017 32.9 9.6 63 118-180 21-91 (167)
251 1v54_E Cytochrome C oxidase po 87.0 6.4 0.00022 29.0 8.9 47 449-495 27-73 (109)
252 4b4t_P 26S proteasome regulato 86.8 25 0.00085 34.5 19.3 257 305-562 29-320 (445)
253 4gns_B Protein CSD3, chitin bi 86.2 4.4 0.00015 42.6 11.1 86 464-551 610-708 (754)
254 4fhn_B Nucleoporin NUP120; pro 84.9 7.9 0.00027 43.4 13.3 193 120-319 815-1048(1139)
255 3lpz_A GET4 (YOR164C homolog); 84.2 27 0.00091 32.5 22.8 127 124-280 19-159 (336)
256 2y69_E Cytochrome C oxidase su 83.6 7.4 0.00025 30.4 8.4 63 482-545 68-130 (152)
257 2y69_E Cytochrome C oxidase su 82.4 11 0.00038 29.5 8.9 44 451-494 72-115 (152)
258 3ffl_A Anaphase-promoting comp 78.8 16 0.00056 29.8 9.4 29 536-564 121-149 (167)
259 2wpv_A GET4, UPF0363 protein Y 77.5 44 0.0015 30.7 20.8 80 361-459 133-215 (312)
260 2p58_C Putative type III secre 77.0 19 0.00066 26.4 8.9 78 342-427 22-99 (116)
261 2uwj_G Type III export protein 75.8 18 0.00062 26.5 7.8 78 342-427 21-98 (115)
262 3esl_A Checkpoint serine/threo 75.6 25 0.00087 29.8 10.1 58 480-537 92-150 (202)
263 1zbp_A Hypothetical protein VP 75.4 45 0.0015 29.8 13.3 117 441-568 6-131 (273)
264 1zbp_A Hypothetical protein VP 75.0 8.2 0.00028 34.5 7.2 55 161-216 6-60 (273)
265 4b4t_R RPN7, 26S proteasome re 72.8 30 0.001 33.7 11.6 97 399-495 133-236 (429)
266 2p58_C Putative type III secre 72.8 26 0.00088 25.8 8.7 51 161-217 49-99 (116)
267 2uwj_G Type III export protein 72.4 25 0.00084 25.8 7.7 50 162-217 49-98 (115)
268 4b4t_R RPN7, 26S proteasome re 70.1 26 0.00088 34.2 10.5 61 154-214 133-195 (429)
269 4b4t_S RPN3, 26S proteasome re 67.5 24 0.00083 35.0 9.4 65 117-181 231-299 (523)
270 3esl_A Checkpoint serine/threo 67.1 47 0.0016 28.1 9.8 59 445-503 92-151 (202)
271 4a1g_A Mitotic checkpoint seri 63.1 58 0.002 26.2 9.6 52 485-536 83-135 (152)
272 3lpz_A GET4 (YOR164C homolog); 60.4 1.1E+02 0.0037 28.4 23.8 81 360-459 134-214 (336)
273 1qsa_A Protein (soluble lytic 59.0 1.6E+02 0.0056 30.1 34.9 49 439-490 388-436 (618)
274 3eiq_C Programmed cell death p 57.5 1.1E+02 0.0037 28.7 11.6 62 365-427 220-283 (358)
275 4g8k_A 2-5A-dependent ribonucl 57.1 86 0.0029 28.8 11.3 103 454-572 221-329 (337)
276 1wdy_A 2-5A-dependent ribonucl 56.2 29 0.00099 30.9 7.6 20 122-141 7-26 (285)
277 3txn_A 26S proteasome regulato 55.0 1.5E+02 0.005 28.3 22.3 17 552-568 329-345 (394)
278 2wvi_A Mitotic checkpoint seri 53.9 89 0.003 25.5 9.8 57 484-540 77-134 (164)
279 1wdy_A 2-5A-dependent ribonucl 51.7 38 0.0013 30.1 7.6 246 296-573 6-282 (285)
280 1k1a_A B-cell lymphoma 3-encod 50.4 79 0.0027 27.1 9.3 85 124-212 13-101 (241)
281 2d2s_A Exocyst complex compone 48.0 1.2E+02 0.0042 26.4 9.7 90 437-529 23-118 (235)
282 4a1g_A Mitotic checkpoint seri 47.3 1.1E+02 0.0037 24.6 9.0 50 451-500 84-134 (152)
283 3eiq_C Programmed cell death p 44.7 2E+02 0.0069 26.9 13.2 77 470-547 220-298 (358)
284 1qsa_A Protein (soluble lytic 44.5 2.7E+02 0.0094 28.4 36.6 52 407-459 295-346 (618)
285 2d2s_A Exocyst complex compone 43.7 1.5E+02 0.0051 25.8 9.6 27 221-247 90-116 (235)
286 4aez_C MAD3, mitotic spindle c 41.4 56 0.0019 28.2 6.2 54 484-537 131-185 (223)
287 3mv2_A Coatomer subunit alpha; 39.4 2.3E+02 0.0078 26.0 10.8 95 477-571 124-241 (325)
288 2wvi_A Mitotic checkpoint seri 39.1 1.6E+02 0.0053 24.0 9.3 54 450-503 78-132 (164)
289 3ltm_A Alpha-REP4; protein eng 38.8 1.7E+02 0.0058 24.4 19.3 17 361-377 156-172 (211)
290 3eu9_A Huntingtin-interacting 38.5 52 0.0018 28.2 6.1 6 129-134 18-23 (240)
291 3txn_A 26S proteasome regulato 37.8 2.7E+02 0.0094 26.4 27.0 92 227-318 104-207 (394)
292 4gq2_M Nucleoporin NUP120; bet 37.3 3.6E+02 0.012 29.3 13.4 131 158-306 816-950 (950)
293 3t8k_A Uncharacterized protein 34.0 1.1E+02 0.0038 25.2 7.1 29 228-256 41-69 (186)
294 3kea_A K1L; tropism, ANK repea 33.9 1.3E+02 0.0043 27.0 8.0 142 125-282 36-183 (285)
295 2ijq_A Hypothetical protein; s 33.5 1.9E+02 0.0065 23.4 8.2 51 479-529 44-102 (161)
296 2b7e_A PRE-mRNA processing pro 32.8 40 0.0014 21.9 3.0 32 134-165 3-35 (59)
297 4gq2_M Nucleoporin NUP120; bet 32.8 3.7E+02 0.013 29.2 12.7 87 438-530 816-925 (950)
298 2r9g_A AAA ATPase, central reg 31.7 2.3E+02 0.008 23.8 9.5 37 304-341 26-62 (204)
299 2qx5_A Nucleoporin NIC96; mRNA 31.1 4.6E+02 0.016 27.0 18.4 80 298-388 300-382 (661)
300 3kea_A K1L; tropism, ANK repea 30.5 1.4E+02 0.0046 26.7 7.6 16 336-351 167-182 (285)
301 3jxi_A Vanilloid receptor-rela 29.9 17 0.00058 32.2 1.3 15 373-387 233-247 (260)
302 2keb_A DNA polymerase subunit 29.7 1.6E+02 0.0056 21.4 6.6 31 486-516 28-58 (101)
303 4aez_C MAD3, mitotic spindle c 29.1 1.7E+02 0.0057 25.3 7.2 51 450-500 132-183 (223)
304 2ion_A PDCD4, programmed cell 28.9 2.2E+02 0.0076 22.7 9.0 65 434-499 11-77 (152)
305 3bge_A Predicted ATPase; struc 27.3 2.8E+02 0.0095 23.3 8.4 35 304-338 19-53 (201)
306 4fke_A Aminopeptidase N; zinc 26.8 6.3E+02 0.021 27.2 17.1 167 156-325 690-864 (909)
307 1n11_A Ankyrin; clathrin, BAND 26.6 2.6E+02 0.009 26.6 9.5 201 158-385 17-232 (437)
308 1ug3_A EIF4GI, eukaryotic prot 26.6 2.9E+02 0.0099 25.6 9.2 22 192-213 16-37 (339)
309 2fe3_A Peroxide operon regulat 26.4 2.3E+02 0.0078 22.2 7.4 45 193-237 27-71 (145)
310 3jxi_A Vanilloid receptor-rela 25.9 38 0.0013 29.8 2.9 16 513-528 233-248 (260)
311 1k1a_A B-cell lymphoma 3-encod 25.5 3E+02 0.01 23.1 10.9 21 267-287 16-36 (241)
312 3hra_A Ankyrin repeat family p 25.4 1.5E+02 0.0053 24.2 6.7 13 268-280 13-25 (201)
313 2nsz_A Programmed cell death p 25.4 2.3E+02 0.0079 21.8 10.3 25 435-459 10-34 (129)
314 3pvs_A Replication-associated 25.1 4.7E+02 0.016 25.2 13.5 32 376-407 269-300 (447)
315 2ijq_A Hypothetical protein; s 25.1 2.7E+02 0.0093 22.5 8.3 52 129-180 44-103 (161)
316 2f6m_A Suppressor protein STP2 24.4 1.1E+02 0.0036 20.4 3.9 44 120-164 5-48 (65)
317 3t8k_A Uncharacterized protein 24.2 2.1E+02 0.0071 23.5 7.1 29 193-221 41-69 (186)
318 2r9g_A AAA ATPase, central reg 24.2 3.2E+02 0.011 23.0 10.6 32 165-197 27-58 (204)
319 4ets_A Ferric uptake regulatio 23.6 1.7E+02 0.006 23.6 6.2 46 191-236 36-83 (162)
320 3ctd_A Putative ATPase, AAA fa 23.3 3.5E+02 0.012 23.0 8.9 92 298-390 38-137 (213)
321 3pvs_A Replication-associated 23.1 5.2E+02 0.018 25.0 14.0 24 305-328 268-291 (447)
322 1mzb_A Ferric uptake regulatio 23.0 2.2E+02 0.0077 22.0 6.6 33 202-234 33-65 (136)
323 2fe3_A Peroxide operon regulat 22.8 2.8E+02 0.0095 21.7 7.2 34 483-516 37-70 (145)
324 3eu9_A Huntingtin-interacting 22.5 1.8E+02 0.0061 24.5 6.7 7 302-308 49-55 (240)
325 1wty_A Hypothetical protein TT 22.4 2.5E+02 0.0086 21.1 6.9 75 448-529 4-79 (119)
326 2f6m_A Suppressor protein STP2 22.3 1.4E+02 0.0046 19.9 4.1 44 155-199 5-48 (65)
327 2xig_A Ferric uptake regulatio 22.1 2.9E+02 0.01 21.8 7.4 67 134-201 9-75 (150)
328 2zu6_B Programmed cell death p 22.0 4.5E+02 0.015 23.9 13.0 73 470-543 169-243 (307)
329 3t5v_B Nuclear mRNA export pro 21.9 1.7E+02 0.0057 28.6 6.6 62 118-179 177-247 (455)
330 3ltm_A Alpha-REP4; protein eng 21.9 3.4E+02 0.012 22.4 19.3 49 150-202 31-79 (211)
331 3bge_A Predicted ATPase; struc 21.5 3.6E+02 0.012 22.6 9.5 32 165-196 20-51 (201)
332 3eyy_A Putative iron uptake re 20.9 2.2E+02 0.0075 22.4 6.2 33 203-235 33-65 (145)
333 2rfa_A Transient receptor pote 20.8 2.7E+02 0.0093 23.3 7.5 20 303-322 162-181 (232)
334 2o03_A Probable zinc uptake re 20.8 1.8E+02 0.0061 22.4 5.5 45 122-166 15-59 (131)
335 1ug3_A EIF4GI, eukaryotic prot 20.6 5E+02 0.017 23.9 10.2 25 120-144 14-38 (339)
336 1bpo_A Protein (clathrin); cla 20.3 6.1E+02 0.021 24.7 11.1 134 175-318 349-482 (494)
337 4g8k_A 2-5A-dependent ribonucl 20.1 3.3E+02 0.011 24.6 8.4 10 198-207 33-42 (337)
338 2ion_A PDCD4, programmed cell 20.0 3.3E+02 0.011 21.6 8.7 24 191-214 13-36 (152)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-40 Score=353.06 Aligned_cols=446 Identities=12% Similarity=0.011 Sum_probs=394.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008105 113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNM 192 (577)
Q Consensus 113 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 192 (577)
..+++..|+.++..|.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|.++|+.+... +++..+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 155 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYL 155 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHH
Confidence 3468899999999999999999999999999864 568899999999999999999999999998654 678999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHh-hC--------------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 008105 193 MVGGLCKRGQIRSAIALLDEMS-VS--------------GCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYL 257 (577)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~~~-~~--------------g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 257 (577)
++.+|.+.|++++|.++|+++. .. |.+++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+.
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 234 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCY 234 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhh
Confidence 9999999999999999999533 21 223468999999999999999999999999998864 3344
Q ss_pred HHHHHH--------------------------------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 008105 258 ITYTIL--------------------------------------IEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLV 299 (577)
Q Consensus 258 ~~~~~l--------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 299 (577)
..+..+ +..|.+.|++++|.++|+++.+. +++..+|+.++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 443333 44566789999999999999865 57999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105 300 NFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVD 379 (577)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 379 (577)
..|.+.|++++|.++|+++.+.+. .+..++..++.++.+.|++++|..+++.+.+.. +.+..+|+.++..|.+.|+++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHH
Confidence 999999999999999999998753 377889999999999999999999999998654 467899999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105 380 RAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMM 459 (577)
Q Consensus 380 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 459 (577)
+|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998864 5578899999999999999999999999998875 6688999999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008105 460 ENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKR----GNKMR--NSAYRLVIHGLCKSKKVDMAIQVLELMISSRY 533 (577)
Q Consensus 460 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 533 (577)
+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 546 (597)
T 2xpi_A 469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS- 546 (597)
T ss_dssp HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 753 457899999999999999999999999999875 66777 7899999999999999999999999998754
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008105 534 KPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEK 571 (577)
Q Consensus 534 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 571 (577)
+.+..+|..+..+|.+.|++++|.+.++++++.++...
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 44789999999999999999999999999999776543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-36 Score=322.54 Aligned_cols=423 Identities=10% Similarity=0.010 Sum_probs=369.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------
Q 008105 113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS----------- 181 (577)
Q Consensus 113 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------- 181 (577)
..||..++..++.+|.+.|++++|..+|+++... +++..+++.++.+|.+.|++++|.++|+++...
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 190 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc
Confidence 3578899999999999999999999999998654 678999999999999999999999999953221
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH-----------------------------
Q 008105 182 ----GGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTI----------------------------- 228 (577)
Q Consensus 182 ----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l----------------------------- 228 (577)
+.+++..+|+.++.+|.+.|++++|.++|++|.+.+ +.+...+..+
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 223458899999999999999999999999998764 2344444333
Q ss_pred ---------HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 008105 229 ---------LRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLV 299 (577)
Q Consensus 229 ---------i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 299 (577)
+..|.+.|++++|.++|+++.+. +++..+++.++..|.+.|++++|.++|+++...+ +.+..+|+.++
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 346 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHL 346 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHH
Confidence 44566789999999999998765 6899999999999999999999999999999875 34778999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105 300 NFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVD 379 (577)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 379 (577)
.++.+.|++++|..+++++.+.. +.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|+++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998653 4468899999999999999999999999998764 347889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105 380 RAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMM 459 (577)
Q Consensus 380 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 459 (577)
+|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.
T Consensus 425 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 425 QAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999875 5688999999999999999999999999998865 5678999999999999999999999999998
Q ss_pred HC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008105 460 EN----GISPD--DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRY 533 (577)
Q Consensus 460 ~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 533 (577)
+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+..
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~- 580 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS- 580 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-
Confidence 75 66787 7899999999999999999999999998865 3478899999999999999999999999999742
Q ss_pred CCCHHHHHHHHHHH
Q 008105 534 KPDDTVFSTIVKKV 547 (577)
Q Consensus 534 ~p~~~~~~~l~~~~ 547 (577)
+.+...+..+..+|
T Consensus 581 p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 581 PNEIMASDLLKRAL 594 (597)
T ss_dssp TTCHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHH
Confidence 33466666665544
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.8e-27 Score=237.65 Aligned_cols=381 Identities=13% Similarity=0.085 Sum_probs=211.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105 124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI 203 (577)
Q Consensus 124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 203 (577)
...+.+.|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 345555666666666666655542 2234444445555555566666666665555543 33455555555555555666
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008105 204 RSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDM 283 (577)
Q Consensus 204 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 283 (577)
++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. |.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66655555555432 2234445555555555555555555555554432 222333444444444444555555444444
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 008105 284 AIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVF 363 (577)
Q Consensus 284 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 363 (577)
.... +. +..+|..+...+...|++++|...|+++.+.+ +.+..
T Consensus 162 l~~~-p~-----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 204 (388)
T 1w3b_A 162 IETQ-PN-----------------------------------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLD 204 (388)
T ss_dssp HHHC-TT-----------------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHhC-CC-----------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHH
Confidence 4432 11 23444444555555555555555555554432 22344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105 364 TYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLA 443 (577)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 443 (577)
.|..+...+...|++++|+..|++..... +.+..++..+...+.+.|++++|...++++.+.. +.+..+|..+...+.
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 55555555556666666666666555542 3345555666666666666666666666665543 334556666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHH
Q 008105 444 KKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQ 523 (577)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 523 (577)
+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|.+
T Consensus 283 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666777776666666542 3456666667777777777777777777766542 2245566667777777777777777
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 008105 524 VLELMISSRYKP-DDTVFSTIVKKVADDG 551 (577)
Q Consensus 524 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~g 551 (577)
.++++.+. .| +...|..+...+...|
T Consensus 361 ~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 361 HYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 77777642 33 3556666666665554
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.3e-27 Score=235.71 Aligned_cols=365 Identities=13% Similarity=0.071 Sum_probs=298.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008105 194 VGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGI 273 (577)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 273 (577)
...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+. .|.+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCH
Confidence 344556677777777777666543 334556666666777777777777777776664 356777788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHH
Q 008105 274 ARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN-SITYNTLLHSLGSRGCWDAVDKILDI 352 (577)
Q Consensus 274 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 352 (577)
++|.+.|+++.... +.+..+|..+...+.+.|++++|.+.++++.+.. |+ ...+..+...+...|++++|.+.|+.
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88888888877653 2345678888888888888888888888887763 33 44666777888888999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 008105 353 MNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCL 432 (577)
Q Consensus 353 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 432 (577)
+.+.. +.+..+|..+...+.+.|++++|+..|+++.+.+ +.+...+..+...+...|++++|...+++..... +.+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 88764 3467899999999999999999999999999875 5578889999999999999999999999888764 5568
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 008105 433 ITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGL 512 (577)
Q Consensus 433 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 512 (577)
.++..+...|.+.|++++|.+.|+++.+.+ +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 899999999999999999999999999864 3357889999999999999999999999998864 45788999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008105 513 CKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVF 569 (577)
Q Consensus 513 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (577)
...|++++|.+.++++.+. .+.+..++..+...+.+.|++++|.+.++++++..+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999999999999864 2445888999999999999999999999999986553
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.5e-30 Score=263.07 Aligned_cols=204 Identities=14% Similarity=0.129 Sum_probs=116.6
Q ss_pred HHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------hHH
Q 008105 136 ASKLIDIMARRNQIPDF-HFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQ---------IRS 205 (577)
Q Consensus 136 A~~l~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---------~~~ 205 (577)
+..+.+++.+++..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 33444444444443322 23555556666666666666666666666666666666666666555443 455
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008105 206 AIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAI 285 (577)
Q Consensus 206 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 285 (577)
|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc
Q 008105 286 EGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGS 339 (577)
Q Consensus 286 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 339 (577)
.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666666666666666665554
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.1e-30 Score=262.42 Aligned_cols=186 Identities=16% Similarity=0.162 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHHhhCCCCCCHHH
Q 008105 364 TYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGM---------LNEALQLLHLLNGSSCSPCLIT 434 (577)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~~~~~~~~p~~~~ 434 (577)
.++.+|++|++.|++++|+++|++|.+.|+.||..+|+++|.+|++.+. +++|.++|++|...|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455555555555555555555555555555555555555555554332 4556666666666666666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh
Q 008105 435 YNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCK 514 (577)
Q Consensus 435 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 514 (577)
|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008105 515 SKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVAD 549 (577)
Q Consensus 515 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 549 (577)
.|++++|.+++++|.+.+..|+..||+.++..+..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666655544
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.2e-25 Score=226.81 Aligned_cols=404 Identities=14% Similarity=0.029 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG 196 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 196 (577)
...+..+...+.+.|++++|+..|+++.+.+ |+..++..+..++.+.|++++|.+.++++.+.+ +.+...|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567788899999999999999999999975 689999999999999999999999999999876 4577889999999
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-------------------CC-
Q 008105 197 LCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCP-------------------PY- 256 (577)
Q Consensus 197 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-------------------~~- 256 (577)
|.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+.. |+
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999998875 445444444554444333333332222211111111 11
Q ss_pred ------------------------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----cCC--------CCCHhhHH
Q 008105 257 ------------------------LITYTILIEQVCK---QCGIARAIEVLDDMAI-----EGC--------SPDIVTYN 296 (577)
Q Consensus 257 ------------------------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~~--------~~~~~~~~ 296 (577)
...+......+.. .|++++|...|+++.. ..- +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 2222222222222 4555555555555554 100 11223444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008105 297 SLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYG 376 (577)
Q Consensus 297 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 376 (577)
.+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 55555555555555555555555442 224455555555555555555555555555442 223445555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008105 377 LVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYG 456 (577)
Q Consensus 377 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 456 (577)
++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555555555555442 2344455555555555555555555555554432 2334455555555555555555555555
Q ss_pred HHHHCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008105 457 QMMENGI-SPD----DITHRTLIWGFCR---ADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELM 528 (577)
Q Consensus 457 ~m~~~g~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 528 (577)
++.+... .++ ...+..+...+.. .|++++|.+.++++.+.. +.+..++..+...+.+.|++++|.+.++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5543210 011 2245555555555 555555555555554432 123444555555555555555555555555
Q ss_pred HH
Q 008105 529 IS 530 (577)
Q Consensus 529 ~~ 530 (577)
.+
T Consensus 476 ~~ 477 (514)
T 2gw1_A 476 AD 477 (514)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=4.9e-23 Score=214.72 Aligned_cols=434 Identities=12% Similarity=0.022 Sum_probs=235.4
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG 195 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 195 (577)
....|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++.+.|++++|++.|+++.+.+ +.+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34678889999999999999999999999975 4488899999999999999999999999999876 557889999999
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHH
Q 008105 196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRK------GCPPYLITYTILIEQVCK 269 (577)
Q Consensus 196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~ 269 (577)
.+...|++++|.+.|+.+.. .|+ .....+..+...+...+|...++++... ...|+.... ..+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL---NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSL----ASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHH----HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhc---CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHH----HHHHH
Confidence 99999999999999974432 222 2222344555566677888888887543 122333322 22333
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCCC------HHHHHHHH
Q 008105 270 QCGIARAIEVLDDMAIEGCSPDIV-TYNSLVNFSCK--------QGKYDDAVLVINNLLSRGMEPN------SITYNTLL 334 (577)
Q Consensus 270 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ll 334 (577)
..+.+.+...+...... .+... ....+...+.. .|++++|..+++++.+...... ..++..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTG 250 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHH
Confidence 33333333322221111 11111 11111111111 1245555555555554421100 11233344
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 008105 335 HSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLN 414 (577)
Q Consensus 335 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 414 (577)
..+...|++++|...++...+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence 44455555555555555555432 334455555555555555555555555555442 334455555555555555555
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105 415 EALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIG 494 (577)
Q Consensus 415 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 494 (577)
+|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.
T Consensus 328 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 328 NAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5555555554433 2234455555555555555555555555555432 2234455555555555555555555555544
Q ss_pred hCCC-----CccHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105 495 KRGN-----KMRNSAYRLVIHGLCKS----------KKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKL 559 (577)
Q Consensus 495 ~~~~-----~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 559 (577)
+... ......+......+... |++++|...++++.+.. +.+...+..+...+.+.|++++|.+.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 3210 00111122233344444 55555555555555421 22345555555555555555555555
Q ss_pred HHHHHHcCC
Q 008105 560 WQKLIEWKV 568 (577)
Q Consensus 560 ~~~~~~~~~ 568 (577)
+++.++..+
T Consensus 485 ~~~al~~~~ 493 (537)
T 3fp2_A 485 FEDSAILAR 493 (537)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhCC
Confidence 555555443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=3.2e-22 Score=203.67 Aligned_cols=314 Identities=11% Similarity=0.043 Sum_probs=178.9
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
.+...+..++..|.+.|++++|+.+|+++.+.. +.+..++..+..++.+.|++++|.+.|+++.+.+ +.+...+..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345667777777888888888888887777653 3467777777777777788888887777777765 34566777777
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008105 195 GGLCKRGQIRSAIALLDEMSVSGCEPDV---ITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQC 271 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 271 (577)
..|.+.|++++|.+.|+++.+.. +.+. ..+..++..+... .+..+...+.+.|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcC
Confidence 77777777777777777777653 2233 4555554431100 0111222344445
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 008105 272 GIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILD 351 (577)
Q Consensus 272 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 351 (577)
++++|.+.|+++.... +.+...+..+...|.+.|++++|...++++.+.. +.+..++..+...|...|++++|...++
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555444432 2234444444455555555555555555444332 1233444444444445555555555554
Q ss_pred HHHhCCCCCCHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChh
Q 008105 352 IMNEASHSPTVFTYNI------------LINGLCKYGLVDRAINSFNQMVSKNCQPD-----IVTYNTVLGALCKEGMLN 414 (577)
Q Consensus 352 ~~~~~~~~~~~~~~~~------------li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~ 414 (577)
.+.+.. +.+...+.. +...+.+.|++++|...|+++.+.. |+ ...+..+...+.+.|+++
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHH
Confidence 444332 112222222 2556666666666666666666542 22 235555666666666666
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 415 EALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMME 460 (577)
Q Consensus 415 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 460 (577)
+|...++.+.+.. +.+...|..+..+|...|++++|...|+++.+
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6666666655543 33556666666666666666666666666665
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=3e-22 Score=203.87 Aligned_cols=283 Identities=11% Similarity=0.046 Sum_probs=179.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHH
Q 008105 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDT---ITY 190 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~ 190 (577)
+.+..+|..+..+|.+.|++++|...|+++.+.+ +.+..++..+...|.+.|++++|.+.|+++.+.. +.+. ..+
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ 134 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQ 134 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHH
Confidence 4578999999999999999999999999999985 3478889999999999999999999999999875 3344 667
Q ss_pred HHHHHH------------HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 008105 191 NMMVGG------------LCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLI 258 (577)
Q Consensus 191 ~~li~~------------~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 258 (577)
..++.. +.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|++.|+++.+.. +.+..
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 212 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTE 212 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 776554 666777777777777766543 4456666777777777777777777777766542 44566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105 259 TYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLG 338 (577)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 338 (577)
++..+...+...|++++|.+.|+++.... +.+...+..+... . ....+..+...+.
T Consensus 213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~--------------~---------~~~~~~~~~~~~~ 268 (450)
T 2y4t_A 213 AFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV--------------K---------KLNKLIESAEELI 268 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--------------H---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH--------------H---------HHHHHHHHHHHHH
Confidence 66666677777777777777777666542 1122333322000 0 0000111244445
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 008105 339 SRGCWDAVDKILDIMNEASHSPT----VFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLN 414 (577)
Q Consensus 339 ~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 414 (577)
..|++++|...|+.+.+.... + ...+..+...+.+.|++++|+..++++.+.. +.+..+|..+..+|...|+++
T Consensus 269 ~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~ 346 (450)
T 2y4t_A 269 RDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYD 346 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHH
Confidence 555555555555555443211 1 2244555555555555555555555555442 334555555555555556666
Q ss_pred HHHHHHHHHhhC
Q 008105 415 EALQLLHLLNGS 426 (577)
Q Consensus 415 ~A~~~~~~~~~~ 426 (577)
+|...++.+.+.
T Consensus 347 ~A~~~~~~al~~ 358 (450)
T 2y4t_A 347 EAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 666665555553
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.8e-22 Score=204.79 Aligned_cols=375 Identities=11% Similarity=0.015 Sum_probs=301.6
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
||+.+|..+..+|.+.|++++|++.++++.+.+ +.+..++..+..++.+.|++++|...|+++.+.+ +++......++
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 114 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPML 114 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHH
Confidence 678999999999999999999999999999875 4477899999999999999999999999999886 34555555555
Q ss_pred HHHHhcCChHHHHHHHHHHhhC-----------------------------------CC---------CCCHHHHHHHHH
Q 008105 195 GGLCKRGQIRSAIALLDEMSVS-----------------------------------GC---------EPDVITYNTILR 230 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~-----------------------------------g~---------~~~~~~~~~li~ 230 (577)
..+.+......+.+.+..+... .. +.+...+.....
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 5554433333333322211110 00 011444455555
Q ss_pred HHHh---CCChHHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhh
Q 008105 231 TMFD---NGKFKQAIGFWKDQLR-----KGC--------PPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVT 294 (577)
Q Consensus 231 ~~~~---~~~~~~A~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 294 (577)
.+.. .|++++|+..|+++.+ ... +.+..++..+...+...|++++|.+.|+++.... |+...
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHH
Confidence 5554 8999999999999987 311 2235678888899999999999999999999875 34888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008105 295 YNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCK 374 (577)
Q Consensus 295 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 374 (577)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+... .+...+..+...+.+
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHH
Confidence 9999999999999999999999998874 33567888999999999999999999999988753 467789999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHh---cC
Q 008105 375 YGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSC-SPC----LITYNTLIDGLAK---KG 446 (577)
Q Consensus 375 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~---~g 446 (577)
.|++++|...++++.+.. +.+...+..+...+.+.|++++|...++.+..... .++ ...+..+...+.. .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999998864 55678899999999999999999999998876431 111 3488999999999 99
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 008105 447 CMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRG 497 (577)
Q Consensus 447 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 497 (577)
++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+..
T Consensus 430 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 430 NFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9999999999998753 3467888999999999999999999999998864
No 12
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=1.1e-17 Score=171.86 Aligned_cols=364 Identities=9% Similarity=-0.004 Sum_probs=261.4
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 008105 136 ASKLIDIMARRNQIPDFHFCINLIRGLIR----IDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK----RGQIRSAI 207 (577)
Q Consensus 136 A~~l~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 207 (577)
+...+....+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 344555555443 56666667777766 677888888887777654 55667777777777 77788888
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 008105 208 ALLDEMSVSGCEPDVITYNTILRTMFD----NGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCK----QCGIARAIEV 279 (577)
Q Consensus 208 ~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 279 (577)
+.|++..+.| +...+..|...|.. .+++++|++.|++..+.| +...+..|...|.. .++.++|.+.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8887777654 56666667777776 677888888888777765 56667777777766 6778888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHH
Q 008105 280 LDDMAIEGCSPDIVTYNSLVNFSCK----QGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGS----RGCWDAVDKILD 351 (577)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~ 351 (577)
|++..+.| +...+..+...|.. .++.++|..+|++..+.| +...+..+...|.. .+++++|...|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 88777664 56677777777776 778888888888777764 45566666666664 677888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHH
Q 008105 352 IMNEASHSPTVFTYNILINGLCK----YGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKE-----GMLNEALQLLHL 422 (577)
Q Consensus 352 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~ 422 (577)
...+.+ +...+..+...|.. .++.++|+..|++..+.+ +...+..+...|... +++++|...++.
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 777654 45566666667776 778888888888877654 556666677777766 788888888887
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhh
Q 008105 423 LNGSSCSPCLITYNTLIDGLAKKG---CMEKAMVLYGQMMENGISPDDITHRTLIWGFCR----ADQVEEAVDLLKEIGK 495 (577)
Q Consensus 423 ~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 495 (577)
..+.+ +...+..+...|...| ++++|.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 77765 4556666777776655 6778888888887763 66777777777777 7788888888888777
Q ss_pred CCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 008105 496 RGNKMRNSAYRLVIHGLCK----SKKVDMAIQVLELMISSR 532 (577)
Q Consensus 496 ~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 532 (577)
.+ +...+..+...|.. .+++++|...|++..+.+
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 54 45566677777777 788888888888887654
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=6.5e-20 Score=191.05 Aligned_cols=397 Identities=13% Similarity=0.051 Sum_probs=294.4
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
.++.+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+...+...|++++|.+.|+.+ ... |+ ..+..+
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~--~~--~~~~~~ 130 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVL-SLN--GD--FDGASI 130 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C--------------
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcC--CC--CChHHH
Confidence 468899999999999999999999999999975 447888999999999999999999999743 322 22 223335
Q ss_pred HHHHhcCChHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 008105 195 GGLCKRGQIRSAIALLDEMSVS------GCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLI-TYTILIEQV 267 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~------g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~ 267 (577)
..+...+...+|...++++... ...|+.. .+..+....+.+.+...+..... ..+... ....+...+
T Consensus 131 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~ 204 (537)
T 3fp2_A 131 EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLY 204 (537)
T ss_dssp -CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHH
Confidence 5566667778899999998653 1123333 33444455566555544333211 122211 222222221
Q ss_pred --------HHcCCHHHHHHHHHHHHHcCCCCC--------HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 008105 268 --------CKQCGIARAIEVLDDMAIEGCSPD--------IVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYN 331 (577)
Q Consensus 268 --------~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 331 (577)
...|++++|.++++++.+.. |+ ..++..+...+...|++++|...++++.+. .|+...+.
T Consensus 205 ~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 280 (537)
T 3fp2_A 205 SATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYI 280 (537)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHH
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHH
Confidence 12357888999999888653 33 234666777888899999999999999887 55677888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008105 332 TLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEG 411 (577)
Q Consensus 332 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 411 (577)
.+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+...+...|
T Consensus 281 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 358 (537)
T 3fp2_A 281 FLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQG 358 (537)
T ss_dssp HHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 88889999999999999999988765 3467889999999999999999999999998874 446778888999999999
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc------
Q 008105 412 MLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENG-----ISPDDITHRTLIWGFCRA------ 480 (577)
Q Consensus 412 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~------ 480 (577)
++++|...++.+.+.. +.+...+..+...+...|++++|...|+++.+.. .......+......+...
T Consensus 359 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 437 (537)
T 3fp2_A 359 KFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437 (537)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccch
Confidence 9999999999888764 5567788899999999999999999999987532 111222344555677777
Q ss_pred ----CCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008105 481 ----DQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS 531 (577)
Q Consensus 481 ----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 531 (577)
|++++|...|+++.+... .+...+..+...+.+.|++++|.+.|+++.+.
T Consensus 438 ~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999887642 35678888999999999999999999999864
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=6.4e-19 Score=173.11 Aligned_cols=331 Identities=11% Similarity=0.072 Sum_probs=205.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG 195 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 195 (577)
|+..+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45677888899999999999999999998874 3467888888899999999999999999988875 446788888899
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCC---CCHHHHHHH------------HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 008105 196 GLCKRGQIRSAIALLDEMSVSGCE---PDVITYNTI------------LRTMFDNGKFKQAIGFWKDQLRKGCPPYLITY 260 (577)
Q Consensus 196 ~~~~~g~~~~A~~~~~~~~~~g~~---~~~~~~~~l------------i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 260 (577)
.+...|++++|.+.|+++.+.. + .+...+..+ ...+...|++++|++.++++.+.. +.+...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 9999999999999999988763 2 234444444 345555666666666666655542 3445555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc
Q 008105 261 TILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSR 340 (577)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 340 (577)
..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...+++..+.... +...+..+..
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~----- 230 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQ----- 230 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH-----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHH-----
Confidence 555555556666666666665555442 234455555555555555555555555555543211 1111111100
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHH
Q 008105 341 GCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDI----VTYNTVLGALCKEGMLNEA 416 (577)
Q Consensus 341 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A 416 (577)
+. .......+...+.+.|++++|...++++.+.. +.+. ..+..+...+.+.|++++|
T Consensus 231 ------------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 231 ------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp ------------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 00 00011122445666677777777776666643 2222 2233455666667777777
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008105 417 LQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFC 478 (577)
Q Consensus 417 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 478 (577)
...++...+.. +.+..++..+...+...|++++|...|++..+.. +-+...+..+..+..
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 77776666543 4456666667777777777777777777776542 123444555554443
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=2.5e-17 Score=169.32 Aligned_cols=354 Identities=12% Similarity=0.022 Sum_probs=308.4
Q ss_pred CCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCC
Q 008105 115 NDEKTNNKILQNFCS----RGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIR----IDRIEKASKVLQIMVMSGGVPD 186 (577)
Q Consensus 115 ~~~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~ 186 (577)
.|+..+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.++|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 367788889999988 899999999999999874 67788889999998 899999999999999876 6
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHH
Q 008105 187 TITYNMMVGGLCK----RGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD----NGKFKQAIGFWKDQLRKGCPPYLI 258 (577)
Q Consensus 187 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ 258 (577)
...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|++.|++..+.+ +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 7788888899988 889999999999998865 67788888888887 889999999999999875 788
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHH
Q 008105 259 TYTILIEQVCK----QCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCK----QGKYDDAVLVINNLLSRGMEPNSITY 330 (577)
Q Consensus 259 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~ 330 (577)
.+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 88889998988 899999999999998875 66778888888886 899999999999998765 45667
Q ss_pred HHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 008105 331 NTLLHSLGS----RGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKY-----GLVDRAINSFNQMVSKNCQPDIVTYN 401 (577)
Q Consensus 331 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~ 401 (577)
..+...|.. .++.++|...|+...+.+ +...+..+...|... +++++|+..|++..+.+ +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 777777777 899999999999998765 566788888888887 89999999999999875 567788
Q ss_pred HHHHHHHhcC---ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008105 402 TVLGALCKEG---MLNEALQLLHLLNGSSCSPCLITYNTLIDGLAK----KGCMEKAMVLYGQMMENGISPDDITHRTLI 474 (577)
Q Consensus 402 ~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 474 (577)
.+...|...| +.++|...|+...+.+ +...+..+...|.. .+++++|...|++..+.| +...+..|.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 8888888766 7899999999998875 67888899999988 899999999999999875 677888899
Q ss_pred HHHHh----cCCHHHHHHHHHHHhhCCC
Q 008105 475 WGFCR----ADQVEEAVDLLKEIGKRGN 498 (577)
Q Consensus 475 ~~~~~----~g~~~~A~~~~~~m~~~~~ 498 (577)
..|.. .++.++|.+.|++..+.+.
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99988 8999999999999988764
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.1e-18 Score=169.32 Aligned_cols=332 Identities=10% Similarity=0.055 Sum_probs=233.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105 151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR 230 (577)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 230 (577)
|+..+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566777777888888888888888887765 4467777778888888888888888888877653 346677777778
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 008105 231 TMFDNGKFKQAIGFWKDQLRKGCP---PYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGK 307 (577)
Q Consensus 231 ~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 307 (577)
.+...|++++|.+.|+++.+.. + .+...+..+..... ...+..+...+...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 8888888888888888777642 2 23333333211100 0112233456667777
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008105 308 YDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQ 387 (577)
Q Consensus 308 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (577)
+++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|++
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777776653 2345566667777777777777777777776653 34666777777777777777777777777
Q ss_pred HHHCCCCCCHHHHH------------HHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 008105 388 MVSKNCQPDIVTYN------------TVLGALCKEGMLNEALQLLHLLNGSSCSPCL----ITYNTLIDGLAKKGCMEKA 451 (577)
Q Consensus 388 m~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A 451 (577)
..+.. +.+...+. .+...+.+.|++++|...++.+.+.. +.+. ..+..+...+...|++++|
T Consensus 214 a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 214 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 77653 33333332 33667899999999999999988764 2233 2355678899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh
Q 008105 452 MVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCK 514 (577)
Q Consensus 452 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 514 (577)
...+++..+.. +.+...+..+...+...|++++|.+.|+++.+... -+...+..+..+...
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Confidence 99999998853 34788999999999999999999999999998642 245566666665543
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=4.2e-17 Score=169.41 Aligned_cols=421 Identities=11% Similarity=0.038 Sum_probs=275.0
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
.|..+|..++. +.+.|++++|..+|+++++. .+.+...|..++..+.+.|++++|.++|+++++.. |+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 36677887777 46778888888888888776 34467777888888888888888888888887763 5666777666
Q ss_pred HHH-HhcCChHHHHH----HHHHHhhC-CCC-CCHHHHHHHHHHHHh---------CCChHHHHHHHHHHHHCCCCCC--
Q 008105 195 GGL-CKRGQIRSAIA----LLDEMSVS-GCE-PDVITYNTILRTMFD---------NGKFKQAIGFWKDQLRKGCPPY-- 256 (577)
Q Consensus 195 ~~~-~~~g~~~~A~~----~~~~~~~~-g~~-~~~~~~~~li~~~~~---------~~~~~~A~~~~~~~~~~~~~~~-- 256 (577)
... ...|++++|.+ +|++.... |.. ++...|...+....+ .|++++|..+|++.++. |.+
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~--P~~~~ 164 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN--PMINI 164 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS--CCTTH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc--hhhhH
Confidence 433 34566666654 66655432 433 345667666665544 56777777777777652 211
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH------hhCC---CCCC-
Q 008105 257 LITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNL------LSRG---MEPN- 326 (577)
Q Consensus 257 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g---~~p~- 326 (577)
...|..........|. ..+. .++. .+.+++..|..++.++ .+.. +.|+
T Consensus 165 ~~~~~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 1222222111000010 0000 0110 1233455566555542 2221 2333
Q ss_pred -------HHHHHHHHHHHHcc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCHH-----
Q 008105 327 -------SITYNTLLHSLGSR----GCW----DAVDKILDIMNEASHSPTVFTYNILINGLCK-------YGLVD----- 379 (577)
Q Consensus 327 -------~~~~~~ll~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~----- 379 (577)
...|...+...... ++. ..+..+|++..... +.+...|..++..+.+ .|+++
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 13444444332221 222 36677888877653 4467788888887775 68876
Q ss_pred --HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHH
Q 008105 380 --RAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPC-L-ITYNTLIDGLAKKGCMEKAMVLY 455 (577)
Q Consensus 380 --~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~ 455 (577)
+|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+.+.+. .|+ . ..|..++..+.+.|++++|.++|
T Consensus 302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88999999886323456888888888889999999999999988875 343 2 47888888888889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-C
Q 008105 456 GQMMENGISPDDITHRTLIWG-FCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSR-Y 533 (577)
Q Consensus 456 ~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~ 533 (577)
++..+.. +.+...|...+.. +...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++.+... .
T Consensus 380 ~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 380 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 9998752 1223333332222 335899999999999887753 2357788888888889999999999999998753 2
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105 534 KPD--DTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV 568 (577)
Q Consensus 534 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (577)
.|+ ...|...+......|+.+.+..+.+++.+.-+
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 332 55788888888889999999999988887544
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.6e-18 Score=166.68 Aligned_cols=199 Identities=7% Similarity=-0.023 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
.++..+..++..+...|++++|.++|+++.+.. +.+...+..++..+.+.|++++|..+++++.+.. +.+...|..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344445555555555555555555555555543 2234444445555555555555555555555443 22344455555
Q ss_pred HHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008105 195 GGLCKRG-QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGI 273 (577)
Q Consensus 195 ~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 273 (577)
..+...| ++++|.+.|++..+.. +.+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 5555555 5555555555554432 2234444445555555555555555555444432 22233333344444444444
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105 274 ARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNL 318 (577)
Q Consensus 274 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 318 (577)
++|.+.++++.... +.+...+..+...+...|++++|...++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44444444444332 122334444444444444444444444443
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=8.3e-17 Score=167.16 Aligned_cols=389 Identities=6% Similarity=-0.022 Sum_probs=266.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCCHHHHHH----HHHHHHhC-CCC-C
Q 008105 113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGL-IRIDRIEKASK----VLQIMVMS-GGV-P 185 (577)
Q Consensus 113 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~----~~~~~~~~-g~~-~ 185 (577)
.+.+...|..++..+.+.|++++|..+|++++... |+...|..++... ...|+++.|.+ +|+..++. |.. +
T Consensus 42 ~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~ 119 (530)
T 2ooe_A 42 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM 119 (530)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcc
Confidence 34578899999999999999999999999999874 6788888877543 45677777665 77777653 544 3
Q ss_pred CHHHHHHHHHHHHh---------cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 008105 186 DTITYNMMVGGLCK---------RGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPY 256 (577)
Q Consensus 186 ~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~ 256 (577)
+...|...+....+ .|++++|..+|++..+....+....|..........+.
T Consensus 120 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~------------------- 180 (530)
T 2ooe_A 120 SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI------------------- 180 (530)
T ss_dssp CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-------------------
T ss_pred cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-------------------
Confidence 56788888887665 78999999999999873111112333332221111110
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH------HcC---CCCC--------HhhHHHHHHHHHhc----CCH----HHH
Q 008105 257 LITYTILIEQVCKQCGIARAIEVLDDMA------IEG---CSPD--------IVTYNSLVNFSCKQ----GKY----DDA 311 (577)
Q Consensus 257 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~---~~~~--------~~~~~~li~~~~~~----g~~----~~A 311 (577)
.+...++. .+.+++..|..++.+.. ... ++|+ ...|...+...... ++. +++
T Consensus 181 -~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a 257 (530)
T 2ooe_A 181 -HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV 257 (530)
T ss_dssp -HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred -hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence 01111111 12234555555555421 111 2333 23454444332221 222 367
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008105 312 VLVINNLLSRGMEPNSITYNTLLHSLGS-------RGCWD-------AVDKILDIMNEASHSPTVFTYNILINGLCKYGL 377 (577)
Q Consensus 312 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 377 (577)
..+|++..... +.+...|..+...+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|+
T Consensus 258 ~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 258 MFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 336 (530)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence 77888877652 2356677777777664 68876 889999988863234568888999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHH
Q 008105 378 VDRAINSFNQMVSKNCQPD-I-VTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDG-LAKKGCMEKAMVL 454 (577)
Q Consensus 378 ~~~A~~~~~~m~~~~~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~ 454 (577)
+++|..+|+++++. .|+ . ..|...+..+.+.|++++|..+|+...+.. +.+...|...... +...|+.++|..+
T Consensus 337 ~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 337 YEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp HHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 99999999999886 343 3 578888888888999999999999888763 2233333332222 3368999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-Ccc--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 455 YGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGN-KMR--NSAYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 455 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
|++..+.. +.+...|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.+.+..+.+++.+
T Consensus 414 ~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 414 FELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99988753 33578899999999999999999999999987532 232 44788888888889999999999998875
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=4.2e-18 Score=165.22 Aligned_cols=295 Identities=11% Similarity=-0.011 Sum_probs=251.8
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 008105 148 QIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNT 227 (577)
Q Consensus 148 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 227 (577)
.+.+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...|..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 45577788889999999999999999999999876 4456677778889999999999999999998764 457888999
Q ss_pred HHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008105 228 ILRTMFDNG-KFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQG 306 (577)
Q Consensus 228 li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 306 (577)
+...+...| ++++|.+.|++..+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 999999999 9999999999998764 5567889999999999999999999999998874 335677888999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcCCH
Q 008105 307 KYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEAS--------HSPTVFTYNILINGLCKYGLV 378 (577)
Q Consensus 307 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~ 378 (577)
++++|...+++..+.. +.+...+..+...+...|++++|...++...+.. .+....++..+...+.+.|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999874 3367789999999999999999999999887642 134567899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HhcCCHH
Q 008105 379 DRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGL-AKKGCME 449 (577)
Q Consensus 379 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~ 449 (577)
++|...+++..+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999999999874 5578889999999999999999999999998875 55778888888887 4556543
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=4.3e-18 Score=168.10 Aligned_cols=303 Identities=12% Similarity=0.000 Sum_probs=165.0
Q ss_pred cCCHHHHHH-HHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHH
Q 008105 165 IDRIEKASK-VLQIMVMSGG---VPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQ 240 (577)
Q Consensus 165 ~g~~~~A~~-~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 240 (577)
.|++++|.+ .+++..+... ..+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355666665 5554443211 1123445556666666666666666666666553 3455566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 241 AIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLS 320 (577)
Q Consensus 241 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 320 (577)
|++.|+++.+.. +.+..++..+...+...|++++|.+.++++...... +...+..+... ...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~--------- 178 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AGG--------- 178 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hhh---------
Confidence 666666666543 445566666666666666666666666666654311 11111111000 000
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 008105 321 RGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSP-TVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVT 399 (577)
Q Consensus 321 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 399 (577)
..+. ..+.. +..+...|++++|...++.+.+..... +..++..+...|.+.|++++|+..|+++.+.. +.+..+
T Consensus 179 --~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 253 (368)
T 1fch_A 179 --AGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLL 253 (368)
T ss_dssp ----------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred --hccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHH
Confidence 0000 00111 112225566666666666665543211 35566666666666677777777776666553 345566
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------CCCHHH
Q 008105 400 YNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGI----------SPDDIT 469 (577)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------~p~~~~ 469 (577)
+..+...+.+.|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+++.+... +....+
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 6666667777777777777776666543 44566677777777777777777777777654210 011567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 008105 470 HRTLIWGFCRADQVEEAVDLLKE 492 (577)
Q Consensus 470 ~~~li~~~~~~g~~~~A~~~~~~ 492 (577)
|..+..+|...|+.++|..++++
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHhCChHhHHHhHHH
Confidence 77777777777777777776654
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=1.1e-17 Score=165.08 Aligned_cols=291 Identities=13% Similarity=0.017 Sum_probs=178.5
Q ss_pred HHHhcCChhhHHH-HHHHHHHcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008105 126 NFCSRGKLTDASK-LIDIMARRNQI---PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRG 201 (577)
Q Consensus 126 ~~~~~g~~~~A~~-l~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 201 (577)
++.-.|++++|.. .|++....... .+...+..+...+.+.|++++|...|+++.+.. +.+...|..+...|.+.|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445578888888 88766554221 135668888899999999999999999999875 457788889999999999
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH---------------HHH
Q 008105 202 QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTIL---------------IEQ 266 (577)
Q Consensus 202 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l---------------~~~ 266 (577)
++++|.+.|+++.+.. +.+..++..+...+...|++++|++.++++.... +.+...+..+ +..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 9999999999988765 5578889999999999999999999999988764 2222222211 222
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHH
Q 008105 267 VCKQCGIARAIEVLDDMAIEGCSP-DIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDA 345 (577)
Q Consensus 267 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 345 (577)
+...|++++|.+.|+++....... +..++..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 235666666666666665542111 34556666666666666666666666655542 2234455555556666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCChhH
Q 008105 346 VDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQP----------DIVTYNTVLGALCKEGMLNE 415 (577)
Q Consensus 346 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----------~~~~~~~li~~~~~~g~~~~ 415 (577)
|...++.+.+.. +.+...+..+...|.+.|++++|...|+++.+..... ...+|..+..++.+.|++++
T Consensus 270 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 270 AVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 666666555442 2344555555666666666666666665555431000 13455555555555555555
Q ss_pred HHHHHH
Q 008105 416 ALQLLH 421 (577)
Q Consensus 416 A~~~~~ 421 (577)
|..++.
T Consensus 349 A~~~~~ 354 (368)
T 1fch_A 349 YGAADA 354 (368)
T ss_dssp HHHHHT
T ss_pred HHHhHH
Confidence 554443
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=3.3e-15 Score=161.06 Aligned_cols=381 Identities=11% Similarity=0.089 Sum_probs=294.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQ--IPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG 195 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 195 (577)
.--...+++|...|.+.+|+++++++...+- .-+....+.++.+..+. +..+..+..++... .....+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~ 1057 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIAN 1057 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHH
Confidence 3345678999999999999999999984421 13556677777777776 55666666665542 12444778
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105 196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR 275 (577)
Q Consensus 196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 275 (577)
.+...|.+++|..+|++.. ......+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++
T Consensus 1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 8889999999999999863 22222333333 678899999998865 257889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 008105 276 AIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNE 355 (577)
Q Consensus 276 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 355 (577)
|.+.|.+. .|...|..++..+.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+. +
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 99999664 377889999999999999999999999887764 34333445888999999988655443 2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHH
Q 008105 356 ASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITY 435 (577)
Q Consensus 356 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 435 (577)
.++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHH
Confidence 356677888999999999999999999985 379999999999999999999998772 56899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc
Q 008105 436 NTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKS 515 (577)
Q Consensus 436 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 515 (577)
..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....|+.+..++++.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC
Confidence 99999999999999998876643 3466778899999999999999999998887654 33455676666666654
Q ss_pred --CChHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 008105 516 --KKVDMAIQVLELMISSRYKP------DDTVFSTIVKKVADDGMTEEAYK 558 (577)
Q Consensus 516 --g~~~~A~~~~~~m~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~ 558 (577)
++..++.++|..-. +++| +...|..++-.|.+.|+++.|..
T Consensus 1328 ~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred CHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 45556666655433 3333 46779999999999999999883
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1e-16 Score=155.51 Aligned_cols=374 Identities=11% Similarity=0.060 Sum_probs=166.8
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008105 129 SRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIA 208 (577)
Q Consensus 129 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 208 (577)
+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5677888888888872 3347888888888888888888888653 466688888888888888888888
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008105 209 LLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGC 288 (577)
Q Consensus 209 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 288 (577)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 77766654 4567778888888888888888887764 366678888888888888888888888866
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105 289 SPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNIL 368 (577)
Q Consensus 289 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 368 (577)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 36888888888888888888888887 267888888888888888888855544322 333445568
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHhhCCCCC------CHHHHHHHHH
Q 008105 369 INGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKE--GMLNEALQLLHLLNGSSCSP------CLITYNTLID 440 (577)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~li~ 440 (577)
+..|.+.|++++|..+++..+... +.....|+-+..+|++- +++.+.++.|.. +.+++| +...|..+..
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHH
Confidence 888888899999988888888765 56677777777777764 344444544432 122222 4567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-C-------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHH
Q 008105 441 GLAKKGCMEKAMVLYGQMMENG-I-------------SPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYR 506 (577)
Q Consensus 441 ~~~~~g~~~~A~~~~~~m~~~g-~-------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 506 (577)
.|.+.++++.|... |.++. . ..+...|-..+..|... .+..--.++.-+ ...+. .+
T Consensus 291 ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~-~p~~l~~ll~~l-~~~ld-----~~ 360 (449)
T 1b89_A 291 LYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-KPLLLNDLLMVL-SPRLD-----HT 360 (449)
T ss_dssp HHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-CGGGHHHHHHHH-GGGCC-----HH
T ss_pred HHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc-CHHHHHHHHHHH-HhccC-----cH
Confidence 88888888888653 44431 1 12334444444444411 111111111111 11111 12
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105 507 LVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKL 559 (577)
Q Consensus 507 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 559 (577)
..+..+.+.|++.-+..++..+.+. .+..+=.++-+.|....+++.-+.-
T Consensus 361 r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~s 410 (449)
T 1b89_A 361 RAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTS 410 (449)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3455566677777777777666542 3455555666677777777654443
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=4.4e-17 Score=160.72 Aligned_cols=265 Identities=11% Similarity=-0.054 Sum_probs=181.4
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
.+...|..+...+.+.|++++|+..|+++++.. +.+..++..+...+.+.|++++|++.|+++.+.. +.+..+|..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 345668889999999999999999999999875 3478889999999999999999999999998875 45688899999
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCC-----------HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--CHHHHH
Q 008105 195 GGLCKRGQIRSAIALLDEMSVSGCEPD-----------VITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPP--YLITYT 261 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~-----------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~ 261 (577)
..|...|++++|.+.|+++.+.. |+ ...+..+...+...|++++|++.|+++.+.. +. +..++.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~ 217 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQT 217 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHH
Confidence 99999999999999999887642 22 1223334667777777788887777777653 22 566777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC
Q 008105 262 ILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRG 341 (577)
Q Consensus 262 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 341 (577)
.+...+.+.|++++|.+.|+++.... +.+..+|..+...|.+.|++++|+..++++.+.. +.+..++..+..+|...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 77777777777777777777776653 3356667777777777777777777777766652 223556666666666666
Q ss_pred CHHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008105 342 CWDAVDKILDIMNEASHS-----------PTVFTYNILINGLCKYGLVDRAINSFN 386 (577)
Q Consensus 342 ~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~ 386 (577)
++++|...++...+.... .+...|..+..++...|+.+.+..+..
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 666666666666543210 023445555555555555555554443
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=1.2e-17 Score=164.82 Aligned_cols=231 Identities=13% Similarity=0.043 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 008105 223 ITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFS 302 (577)
Q Consensus 223 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 302 (577)
..|..+...+.+.|++++|++.|+++++.. +.+..++..+...+.+.|++++|.+.|+++.... +.+..+|..+...|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555556666666666666666665542 3455566666666666666666666666665543 22455666666666
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCH-----------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 008105 303 CKQGKYDDAVLVINNLLSRGMEPNS-----------ITYNTLLHSLGSRGCWDAVDKILDIMNEASHS-PTVFTYNILIN 370 (577)
Q Consensus 303 ~~~g~~~~A~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~ 370 (577)
...|++++|...++++.+.. |+. ..+..+...+...|++++|...++++.+.... .+..++..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 66666666666666665431 111 11222334444455555555555554443211 13444444455
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008105 371 GLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEK 450 (577)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 450 (577)
.|.+.|++++|+..|+++.+.. +.+..+|..+..+|.+.|++++|...++++.+.. +.+..++..+...|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 5555555555555555444432 2234444444444444444444444444443332 2223344444444444444444
Q ss_pred HHHHHHHHH
Q 008105 451 AMVLYGQMM 459 (577)
Q Consensus 451 A~~~~~~m~ 459 (577)
|...|+++.
T Consensus 300 A~~~~~~al 308 (365)
T 4eqf_A 300 AVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=9.4e-17 Score=155.45 Aligned_cols=234 Identities=11% Similarity=-0.048 Sum_probs=145.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG 195 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 195 (577)
+...+..+...+...|++++|..+|+++.+.. +.+..++..+...+.+.|++++|.+.++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 44567788899999999999999999998874 3477888888899999999999999999998875 457788888899
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH--------------HH-HHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 008105 196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTI--------------LR-TMFDNGKFKQAIGFWKDQLRKGCPPYLITY 260 (577)
Q Consensus 196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l--------------i~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 260 (577)
.|...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|.+.++++.+.. +.+...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 9999999999999999888763 2222223222 11 2444555555555555555442 3344555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc
Q 008105 261 TILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSR 340 (577)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 340 (577)
..+...+.+.|++++|.+.++++.... +.+...|..+...+...|++++|...++++.+.. +.+..++..+...+...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 555555555555555555555555432 2234445555555555555555555555544432 11233444444444444
Q ss_pred CCHHHHHHHHHHHHh
Q 008105 341 GCWDAVDKILDIMNE 355 (577)
Q Consensus 341 g~~~~a~~~~~~~~~ 355 (577)
|++++|.+.++...+
T Consensus 254 g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIY 268 (327)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 444444444444433
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.3e-15 Score=155.82 Aligned_cols=387 Identities=11% Similarity=-0.023 Sum_probs=220.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-----
Q 008105 150 PDFHFCINLIRGLIRIDRIEKASKVLQIMVMS--------GGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVS----- 216 (577)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 216 (577)
.....|+.+...+...|++++|++.|++.++. .-+....+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34566788888888888888888888877542 11234567778888888888888888888776532
Q ss_pred C-C-CCCHHHHHHHHHHHHh--CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHcCCC
Q 008105 217 G-C-EPDVITYNTILRTMFD--NGKFKQAIGFWKDQLRKGCPPYLITYTILIEQV---CKQCGIARAIEVLDDMAIEGCS 289 (577)
Q Consensus 217 g-~-~~~~~~~~~li~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~ 289 (577)
+ . .....++..+..++.. .+++++|++.|++.++.. |.+...+..+...+ ...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 0 1134455555444443 446777888887777653 33455555444443 33456667777777766653 2
Q ss_pred CCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008105 290 PDIVTYNSLVNFSCK----QGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTY 365 (577)
Q Consensus 290 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 365 (577)
.+...+..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 244455544444433 345667777777766553 2245566667777777777777777777766653 2345555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008105 366 NILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKK 445 (577)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 445 (577)
..+...|...+....+ .. ...........+..+.|...++...+.. +.+...+..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 5555544322111000 00 0000000111234567777777776654 45567788888899999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHH
Q 008105 446 GCMEKAMVLYGQMMENGISPDDI--THRTLIW-GFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAI 522 (577)
Q Consensus 446 g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 522 (577)
|++++|...|++..+....+... .+..+.. .....|+.++|+..|++..+.. |+..... +....+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHH
Confidence 99999999999988754322211 1222222 2346788999999999888743 3332222 1223445
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008105 523 QVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVF 569 (577)
Q Consensus 523 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (577)
+++++.++.. +.++.+|..+...+...|++++|++.+++.++.++.
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 5666655432 446778889999999999999999999999987664
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=2.4e-16 Score=152.60 Aligned_cols=266 Identities=10% Similarity=0.025 Sum_probs=154.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105 151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR 230 (577)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 230 (577)
+...+..+...+...|++++|.++|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 44556677788888899999999998888765 4467788888888888888888888888887764 456778888888
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 008105 231 TMFDNGKFKQAIGFWKDQLRKGCPPYLITYTIL--------------IE-QVCKQCGIARAIEVLDDMAIEGCSPDIVTY 295 (577)
Q Consensus 231 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 295 (577)
.+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|.+.++++.... +.+...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 8888888888888888887653 2222222222 11 1334444555555555554432 2234444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008105 296 NSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKY 375 (577)
Q Consensus 296 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 375 (577)
..+...+...|++++|...++++.+. . +.+...+..+...+.+.
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~-----------------------------------~-~~~~~~~~~l~~~~~~~ 219 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVEL-----------------------------------R-PDDAQLWNKLGATLANG 219 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------C-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh-----------------------------------C-CCcHHHHHHHHHHHHHc
Confidence 44445555555555555555544433 2 12344444555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-----------CHHHHHHHHHHHHh
Q 008105 376 GLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSP-----------CLITYNTLIDGLAK 444 (577)
Q Consensus 376 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~ 444 (577)
|++++|...++++.+.. +.+..++..+...+.+.|++++|...++.+....... +...|..+..++.+
T Consensus 220 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (327)
T 3cv0_A 220 NRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV 298 (327)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh
Confidence 55555555555544432 2334445555555555555555555555444332110 24455555555555
Q ss_pred cCCHHHHHHHHHH
Q 008105 445 KGCMEKAMVLYGQ 457 (577)
Q Consensus 445 ~g~~~~A~~~~~~ 457 (577)
.|++++|..++++
T Consensus 299 ~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 299 MNRPDLVELTYAQ 311 (327)
T ss_dssp TTCHHHHHHHTTC
T ss_pred cCCHHHHHHHHHH
Confidence 5555555555543
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=5e-16 Score=147.40 Aligned_cols=250 Identities=10% Similarity=0.043 Sum_probs=119.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 008105 163 IRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAI 242 (577)
Q Consensus 163 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~ 242 (577)
...|+++.|+..++................+.++|...|++++|...++.. -+|+..++..+...+...++.++|+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 344555555554444332211111122333445555555555555444321 1344445555555555555555555
Q ss_pred HHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 243 GFWKDQLRKGC-PPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR 321 (577)
Q Consensus 243 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (577)
+.++++...+. |.+...+..+...+...|++++|.+.+++ +.+...+..++..+.+.|++++|.+.++++.+.
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 55555554432 22344444444555555555555555544 234445555555555555555555555555544
Q ss_pred CCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 008105 322 GMEPNSITY---NTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIV 398 (577)
Q Consensus 322 g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 398 (577)
. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|++.++.. +.++.
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~ 235 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPE 235 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 2 322111 11222233345555555555555554 23455555555555566666666666665555543 33455
Q ss_pred HHHHHHHHHHhcCChhH-HHHHHHHHhhC
Q 008105 399 TYNTVLGALCKEGMLNE-ALQLLHLLNGS 426 (577)
Q Consensus 399 ~~~~li~~~~~~g~~~~-A~~~~~~~~~~ 426 (577)
++..++..+...|+.++ +.++++++.+.
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 55555555555555543 34555555443
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=6.5e-17 Score=156.89 Aligned_cols=364 Identities=10% Similarity=0.077 Sum_probs=176.5
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
+++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++...+. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 34469999999999999999999999653 57779999999999999999999988887774 45678899999
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105 195 GGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIA 274 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 274 (577)
.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+ ..|..++..+.+.|+++
T Consensus 102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq 165 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 165 (449)
T ss_dssp -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHH
T ss_pred HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHH
Confidence 99999999999988884 478889999999999999999999999976 37999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008105 275 RAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMN 354 (577)
Q Consensus 275 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 354 (577)
+|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|.+++|..+++...
T Consensus 166 ~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 166 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999988 27899999999999999999996554432 2334445578899999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 008105 355 EASHSPTVFTYNILINGLCKY--GLVDRAINSFNQMVSKNCQP------DIVTYNTVLGALCKEGMLNEALQLLHLLNGS 426 (577)
Q Consensus 355 ~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 426 (577)
... +.....|+-+.-+|++- ++..+.++.|..- .+++| +...|..+.-.|.+.++++.|....-+-...
T Consensus 235 ~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~ 311 (449)
T 1b89_A 235 GLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 311 (449)
T ss_dssp TST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTT
T ss_pred CCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChh
Confidence 765 56778888888888874 3455555555422 12233 4667888999999999999887643222111
Q ss_pred C-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 427 S-----------CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK 495 (577)
Q Consensus 427 ~-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 495 (577)
. -..+...|-..+.-|.... +..--.++. ..... .| .+..+..+.+.|++.-+..++..+..
T Consensus 312 a~~~~~f~~~~~kv~n~elyYkai~fyl~~~-p~~l~~ll~-~l~~~--ld---~~r~v~~~~~~~~l~l~~~yl~~v~~ 384 (449)
T 1b89_A 312 AWKEGQFKDIITKVANVELYYRAIQFYLEFK-PLLLNDLLM-VLSPR--LD---HTRAVNYFSKVKQLPLVKPYLRSVQN 384 (449)
T ss_dssp TCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC-GGGHHHHHH-HHGGG--CC---HHHHHHHHHHTTCTTTTHHHHHHHHT
T ss_pred hhhhHHHHHHHhchhHHHHHHHHHHHHHhcC-HHHHHHHHH-HHHhc--cC---cHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 0 0223334444444444211 111111111 11100 11 13344455566666666666666554
Q ss_pred CCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 008105 496 RGNKMRNSAYRLVIHGLCKSKKVDMAIQVLE 526 (577)
Q Consensus 496 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 526 (577)
.+. ...=.++-..|....+++.-..-.+
T Consensus 385 ~n~---~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 385 HNN---KSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp TCC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhH---HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 432 2333345556667777766555444
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=5e-15 Score=151.40 Aligned_cols=392 Identities=10% Similarity=-0.018 Sum_probs=255.5
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc--------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARR--------NQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS----- 181 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 181 (577)
.....||.|...+...|++++|++.|++..+. ..+....+|+.+...|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34578999999999999999999999987652 12234668899999999999999999999988653
Q ss_pred C-C-CCCHHHHHHHHHHHHhc--CChHHHHHHHHHHhhCCCCCCHHHHHHHHHH---HHhCCChHHHHHHHHHHHHCCCC
Q 008105 182 G-G-VPDTITYNMMVGGLCKR--GQIRSAIALLDEMSVSGCEPDVITYNTILRT---MFDNGKFKQAIGFWKDQLRKGCP 254 (577)
Q Consensus 182 g-~-~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~---~~~~~~~~~A~~~~~~~~~~~~~ 254 (577)
+ . .....++..+..++.+. +++++|.+.|++..+.. +.+...+..+..+ +...++.++|++.+++.++.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 1 12356676666666654 46999999999998764 3456666665555 345688899999999988764 5
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 008105 255 PYLITYTILIEQVCK----QCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITY 330 (577)
Q Consensus 255 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 330 (577)
.+...+..+...+.. .++.++|.+.+++..... +.+..++..+...|...|++++|...+++..+... -+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHH
Confidence 566777666655554 467889999999988764 44678889999999999999999999999988732 245566
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008105 331 NTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKE 410 (577)
Q Consensus 331 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 410 (577)
..+..+|...+... .... ...........+..+.|...+++..+.. +.+..++..+...+...
T Consensus 285 ~~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 66665554321111 1100 0001111112234577888888887764 45566778888889999
Q ss_pred CChhHHHHHHHHHhhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008105 411 GMLNEALQLLHLLNGSSCSPCLI--TYNTLID-GLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAV 487 (577)
Q Consensus 411 g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 487 (577)
|++++|...|++..+....+... .+..+.. .....|++++|+..|++..+. .|+...... ..+.+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHH
Confidence 99999999999887765333221 2222222 234678999999999998874 455433222 233445
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHH
Q 008105 488 DLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSR-YKPDDTV 539 (577)
Q Consensus 488 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~ 539 (577)
+++++....+ +.+..+|..+...+...|++++|++.|++.++.+ ..|++..
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 5666655543 3367788999999999999999999999998743 3444443
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=4.6e-18 Score=177.64 Aligned_cols=151 Identities=15% Similarity=0.093 Sum_probs=118.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhh---CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008105 186 DTITYNMMVGGLCKRGQIRSAIALLDEMSV---SGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTI 262 (577)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 262 (577)
-..+||+||++||+.|++++|.++|++|.+ .|+.||+.|||+||.+|++.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999988764 47889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC------HHHHHHHHH
Q 008105 263 LIEQVCKQCG-IARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN------SITYNTLLH 335 (577)
Q Consensus 263 l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ll~ 335 (577)
+|.++|+.|+ .++|.++|++|...|+.||..+|+.++.+..+.+ +++..+++ ..+..|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999887 4788899999999999999999998887665543 33333333 2344443 445566677
Q ss_pred HHHccC
Q 008105 336 SLGSRG 341 (577)
Q Consensus 336 ~~~~~g 341 (577)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.4e-15 Score=144.36 Aligned_cols=276 Identities=13% Similarity=0.101 Sum_probs=217.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105 124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI 203 (577)
Q Consensus 124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 203 (577)
|+.....|++..|+..++......+.+.......+.++|...|+++.|+..++.. -+|+..++..+...+...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 4667788999999999987655432222345566789999999999999876542 366788889999999999999
Q ss_pred HHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008105 204 RSAIALLDEMSVSGCEP-DVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDD 282 (577)
Q Consensus 204 ~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 282 (577)
++|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998776434 667777888999999999999999987 56888999999999999999999999999
Q ss_pred HHHcCCCCCHhhH---HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 008105 283 MAIEGCSPDIVTY---NSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHS 359 (577)
Q Consensus 283 ~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 359 (577)
+.... |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++..+.. +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 99874 553211 223344555699999999999999873 4577889999999999999999999999998875 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 008105 360 PTVFTYNILINGLCKYGLVDR-AINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQ 418 (577)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 418 (577)
.+..++..++..+...|+.++ +.++++++.+.. +.++.+ .+...+.+.++++..
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~~----~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPFI----KEYRAKENDFDRLVL 286 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH----HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChHH----HHHHHHHHHHHHHHH
Confidence 578889999999999999876 578999988763 333322 233444455555443
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=3.2e-13 Score=145.89 Aligned_cols=375 Identities=11% Similarity=0.105 Sum_probs=279.1
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
.+....+.|+.+..+. +..+..+...+.... ....+...+...|.+++|.++|++.. ......+.++
T Consensus 1020 ~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi 1086 (1630)
T 1xi4_A 1020 EHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI 1086 (1630)
T ss_pred ccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH
Confidence 4567777788777777 456666666554422 13447788889999999999999962 1222233333
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105 195 GGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIA 274 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 274 (577)
. ..|++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. .|...|..++..+.+.|+++
T Consensus 1087 e---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyE 1151 (1630)
T 1xi4_A 1087 E---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWE 1151 (1630)
T ss_pred H---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHH
Confidence 3 7788999999988663 5788999999999999999999999663 47888889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008105 275 RAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMN 354 (577)
Q Consensus 275 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 354 (577)
+|.+.|....+.. ++....+.++.+|++.+++++..... + .++...|..+...|...|++++|..+|...
T Consensus 1152 EAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA- 1221 (1630)
T 1xi4_A 1152 ELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 1221 (1630)
T ss_pred HHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-
Confidence 9999999887764 34334446899999999988644432 1 456677778999999999999999999985
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHH
Q 008105 355 EASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLIT 434 (577)
Q Consensus 355 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 434 (577)
..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|......+ ..+...
T Consensus 1222 --------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~de 1282 (1630)
T 1xi4_A 1222 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADE 1282 (1630)
T ss_pred --------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHH
Confidence 36999999999999999999999876 36788999999999999999988766543 335667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCCc------cHHHHH
Q 008105 435 YNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRA--DQVEEAVDLLKEIGKRGNKM------RNSAYR 506 (577)
Q Consensus 435 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~ 506 (577)
+..++..|.+.|.+++|+.+++...... +.....|+.+...|++. ++..++.++|..-.. +++ +...|.
T Consensus 1283 Leeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~ 1359 (1630)
T 1xi4_A 1283 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWA 1359 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHH
Confidence 7789999999999999999998877543 33455676677777654 455566666654322 222 456788
Q ss_pred HHHHHHHhcCChHHHHHHH-------------HHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008105 507 LVIHGLCKSKKVDMAIQVL-------------ELMISSRYKPDDTVFSTIVKKVADDG 551 (577)
Q Consensus 507 ~li~~~~~~g~~~~A~~~~-------------~~m~~~~~~p~~~~~~~l~~~~~~~g 551 (577)
.++..|.+.|+++.|.... ++.+ .-..|++.|...+.-|...+
T Consensus 1360 elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i--~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1360 ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII--TKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh--cccccHHHHHHHHHHHHhhC
Confidence 9999999999999988322 2222 12446777766666666555
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=175.01 Aligned_cols=119 Identities=17% Similarity=0.208 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008105 396 DIVTYNTVLGALCKEGMLNEALQLLHLLNG---SSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRT 472 (577)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 472 (577)
-..+|+++|++|++.|++++|.++|++|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345666666666666666666666655542 35666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh
Q 008105 473 LIWGFCRADQ-VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCK 514 (577)
Q Consensus 473 li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 514 (577)
+|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 6666666665 35566666666666666666666666654443
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=1.1e-14 Score=147.26 Aligned_cols=347 Identities=12% Similarity=0.028 Sum_probs=205.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008105 122 KILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRI---EKASKVLQIMVMSGGVPDTITYNMMVGGLC 198 (577)
Q Consensus 122 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 198 (577)
.+...+.+.|++++|.++|++..+.| +...+..+...|...|+. ++|.++|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 46777888899999999999888875 344555666666777777 8888888888753 5556666666555
Q ss_pred hcC-----ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008105 199 KRG-----QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFK---QAIGFWKDQLRKGCPPYLITYTILIEQVCKQ 270 (577)
Q Consensus 199 ~~g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 270 (577)
..| ++++|.+.|++..+.| .++ .+..|...|...+..+ ++.+.+......| +......+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG-EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT-CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC-CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 554 6788888888888766 223 6666777776655433 3445555554444 345566666777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc----CCH
Q 008105 271 CGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQG---KYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSR----GCW 343 (577)
Q Consensus 271 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----g~~ 343 (577)
+.++++.+....+.+.-...+...+..|...|.+.| +.++|+..|++..+.| .++...+..+...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 755444443322222211223347777777888888 7888888888888776 34555545566666544 677
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChhH
Q 008105 344 DAVDKILDIMNEASHSPTVFTYNILING-L--CKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEG-----MLNE 415 (577)
Q Consensus 344 ~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----~~~~ 415 (577)
++|...|+... . -+...+..+... + ...+++++|+..|++..+.| +...+..+...|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 88888888776 3 345556666665 3 35677888888888877765 5666666666665 44 7777
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 008105 416 ALQLLHLLNGSSCSPCLITYNTLIDGLAK----KGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCR----ADQVEEAV 487 (577)
Q Consensus 416 A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 487 (577)
|...|+... .| +...+..|...|.. ..++++|...|++..+.|. ......|...|.. ..+.++|.
T Consensus 306 A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 777777766 33 45566666666655 3377777777777776552 2334445555543 34667777
Q ss_pred HHHHHHhhCC
Q 008105 488 DLLKEIGKRG 497 (577)
Q Consensus 488 ~~~~~m~~~~ 497 (577)
.+|+...+.|
T Consensus 379 ~~~~~A~~~g 388 (452)
T 3e4b_A 379 VFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHCC
Confidence 7777766655
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=6e-15 Score=149.33 Aligned_cols=379 Identities=12% Similarity=0.025 Sum_probs=256.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105 158 LIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI---RSAIALLDEMSVSGCEPDVITYNTILRTMFD 234 (577)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 234 (577)
+...+.+.|++++|.++|++..+.| +...+..+...|...|+. ++|.+.|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5667788999999999999998876 344555677777778888 8999999998843 66677777775655
Q ss_pred CC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008105 235 NG-----KFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGI---ARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQG 306 (577)
Q Consensus 235 ~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 306 (577)
.+ ++++|++.|++..+.|.+ ..+..|...|...+.. .++.+.+......| +...+..|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 55 788999999999987733 3677777777766553 34555566555554 4567777888888888
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CCHH
Q 008105 307 KYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRG---CWDAVDKILDIMNEASHSPTVFTYNILINGLCKY----GLVD 379 (577)
Q Consensus 307 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~ 379 (577)
.++++......+.+.....+...+..+...|...| +.++|.+.|+...+.|. ++...+..+...|... ++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHH
Confidence 65554444333322211223347888888888899 89999999999999874 4555556777777655 7999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-----CHHHH
Q 008105 380 RAINSFNQMVSKNCQPDIVTYNTVLGA-L--CKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKG-----CMEKA 451 (577)
Q Consensus 380 ~A~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A 451 (577)
+|+..|++.. .| ++..+..+... + ...+++++|...|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999999988 43 66667777766 4 46899999999999999877 6777888888877 55 99999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh----cCChHHHHH
Q 008105 452 MVLYGQMMENGISPDDITHRTLIWGFCR----ADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCK----SKKVDMAIQ 523 (577)
Q Consensus 452 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 523 (577)
...|++.. . -+...+..|...|.. ..++++|.++|++..+.|. ......+...|.. ..++++|..
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 99999887 4 467788888877776 3489999999999988763 3455556666664 468999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105 524 VLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEW 566 (577)
Q Consensus 524 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (577)
+++...+.|. ++.......+......++.++|.++.++..+.
T Consensus 380 ~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 380 FSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 9999998763 33332222333333345667788887776653
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=2.4e-14 Score=129.63 Aligned_cols=200 Identities=13% Similarity=0.021 Sum_probs=134.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM 193 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 193 (577)
++++..+..+...+.+.|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..+++.++.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3566777888888888888888888888888764 3377778888888888888888888888888765 4466777778
Q ss_pred HHHHHhc-----------CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008105 194 VGGLCKR-----------GQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTI 262 (577)
Q Consensus 194 i~~~~~~-----------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 262 (577)
...+.+. |++++|...|++..+.. +.+...|..+...+...|++++|+..|++.++.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 8888777 77777777777776653 3356667777777777777777777777777665 56667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105 263 LIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLL 319 (577)
Q Consensus 263 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 319 (577)
+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777777777777777776653 2345666666677777777777776666543
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.8e-14 Score=131.87 Aligned_cols=224 Identities=11% Similarity=0.073 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHH
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGV--PD----TITY 190 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~----~~~~ 190 (577)
...+..+...+...|++++|...|+++.+.. .+..++..+...+...|++++|.+.+++..+.... ++ ...|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456667777777777777777777777765 56667777777777777777777777776654211 11 4556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008105 191 NMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQ 270 (577)
Q Consensus 191 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 270 (577)
..+...|.+.|++++|.+.|++..+. .|+. ..+...|++++|.+.++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 66666666666666666666666553 2332 22334455555555555555431 22334444455555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 008105 271 CGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKIL 350 (577)
Q Consensus 271 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 350 (577)
|++++|.+.++++.... +.+...|..+...+.+.|++++|...+++..+.. +.+..++..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 55555555555554432 2234444444555555555555555555444432 112334444444444444444444444
Q ss_pred HHHH
Q 008105 351 DIMN 354 (577)
Q Consensus 351 ~~~~ 354 (577)
+...
T Consensus 231 ~~a~ 234 (258)
T 3uq3_A 231 DAAR 234 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.2e-13 Score=128.52 Aligned_cols=94 Identities=13% Similarity=0.017 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 008105 434 TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLC 513 (577)
Q Consensus 434 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 513 (577)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...|..+...+.
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 218 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 218 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHH
Confidence 33444444444444444444444444321 1233444444444444444444444444444332 112334444444444
Q ss_pred hcCChHHHHHHHHHHH
Q 008105 514 KSKKVDMAIQVLELMI 529 (577)
Q Consensus 514 ~~g~~~~A~~~~~~m~ 529 (577)
..|++++|.+.+++..
T Consensus 219 ~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 219 AVKEYASALETLDAAR 234 (258)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 4444444444444444
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=5e-14 Score=127.52 Aligned_cols=198 Identities=16% Similarity=0.056 Sum_probs=119.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008105 360 PTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLI 439 (577)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 439 (577)
++...+..+...+.+.|++++|+..|++.++.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 344555555566666666666666666665543 4455556666666666666666666666655543 33455556666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHH
Q 008105 440 DGLAKK-----------GCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLV 508 (577)
Q Consensus 440 ~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 508 (577)
..+... |++++|...|++..+.. +-+...+..+...+...|++++|.+.|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 77777777777777642 2246667777777777777777777777777655 466677777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105 509 IHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKL 563 (577)
Q Consensus 509 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 563 (577)
..++...|++++|+..+++.++.. +.+...+..+...+.+.|++++|++.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777777777532 335666777777777777777777777654
No 43
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.62 E-value=2e-11 Score=127.75 Aligned_cols=225 Identities=8% Similarity=-0.072 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008105 344 DAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAI-NSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHL 422 (577)
Q Consensus 344 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 422 (577)
+.+..+|++.... .+-....|-..+..+.+.|+.++|. ++|++.... ++.+...|...+....+.|+++.|..+|+.
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455678777765 3457788888888888889998996 999999875 356677777888888899999999999998
Q ss_pred HhhCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 008105 423 LNGSS---------CSPC------------LITYNTLIDGLAKKGCMEKAMVLYGQMMEN-GISPDDITHRTLIWGFCRA 480 (577)
Q Consensus 423 ~~~~~---------~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~ 480 (577)
+.... ..|+ ...|...+....+.|+.+.|..+|.+.++. + .+....|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence 87531 0131 346888888888889999999999999875 2 12233444333333344
Q ss_pred -CCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 008105 481 -DQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKP--DDTVFSTIVKKVADDGMTEEAY 557 (577)
Q Consensus 481 -g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 557 (577)
++.+.|.++|+...+. .+-+...|...++.....|+.+.|..+|++.+.....+ ....|...++--.+.|+.+.+.
T Consensus 483 ~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4589999999998875 23356677788888888999999999999998653222 3467888888888999999999
Q ss_pred HHHHHHHHcCCCCCc
Q 008105 558 KLWQKLIEWKVFEKG 572 (577)
Q Consensus 558 ~~~~~~~~~~~~~~~ 572 (577)
++.+++.+..|..+.
T Consensus 562 ~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 562 TLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHSTTCCH
T ss_pred HHHHHHHHhCCCCcH
Confidence 999999997776543
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=2.3e-12 Score=121.11 Aligned_cols=224 Identities=11% Similarity=-0.021 Sum_probs=148.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIR----IDRIEKASKVLQIMVMSGGVPDTITYN 191 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~ 191 (577)
++.++..+...|...|++++|.+.|++..+. .+..++..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4566777777777778888888888777773 245666677777777 777777777777777664 566677
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008105 192 MMVGGLCK----RGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD----NGKFKQAIGFWKDQLRKGCPPYLITYTIL 263 (577)
Q Consensus 192 ~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 263 (577)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777776653 56666777777776 777777777777776654 45556666
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105 264 IEQVCK----QCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCK----QGKYDDAVLVINNLLSRGMEPNSITYNTLLH 335 (577)
Q Consensus 264 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 335 (577)
...+.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 666777777776666553 34555566666666 666666666666666553 2444555555
Q ss_pred HHHc----cCCHHHHHHHHHHHHhCC
Q 008105 336 SLGS----RGCWDAVDKILDIMNEAS 357 (577)
Q Consensus 336 ~~~~----~g~~~~a~~~~~~~~~~~ 357 (577)
.|.. .+++++|.+.++...+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5555 556666666666555543
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=5.8e-13 Score=123.51 Aligned_cols=201 Identities=13% Similarity=0.012 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG 196 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 196 (577)
...|..+...+...|++++|...|+++.+.. +.+..++..+...+.+.|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5778889999999999999999999998874 3467788888899999999999999999988775 4467788888888
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105 197 LCKRGQIRSAIALLDEMSVSGCEP-DVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR 275 (577)
Q Consensus 197 ~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 275 (577)
|...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999888732234 46677778888888888888888888887753 4467777788888888888888
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 276 AIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR 321 (577)
Q Consensus 276 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (577)
|.+.++++.... +.+...+..+...+...|+.++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888877653 345666777777778888888888888877765
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=3.5e-12 Score=119.87 Aligned_cols=223 Identities=9% Similarity=-0.045 Sum_probs=134.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008105 291 DIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGS----RGCWDAVDKILDIMNEASHSPTVFTYN 366 (577)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 366 (577)
+..++..+...+...|++++|...|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44556666666666777777777777666532 34555556666666 666666666666666653 455666
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008105 367 ILINGLCK----YGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCK----EGMLNEALQLLHLLNGSSCSPCLITYNTL 438 (577)
Q Consensus 367 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 438 (577)
.+...|.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|...++...+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 666666666666666653 55556666666666 666666666666665544 34455555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q 008105 439 IDGLAK----KGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCR----ADQVEEAVDLLKEIGKRGNKMRNSAYRLVIH 510 (577)
Q Consensus 439 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 510 (577)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+. ...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHH
Confidence 555555 566666666666666543 34555555566666 6666666666666555431 344455555
Q ss_pred HHHh----cCChHHHHHHHHHHHHC
Q 008105 511 GLCK----SKKVDMAIQVLELMISS 531 (577)
Q Consensus 511 ~~~~----~g~~~~A~~~~~~m~~~ 531 (577)
.|.. .+++++|.+.+++..+.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHc
Confidence 5555 56666666666665543
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=1.1e-12 Score=119.00 Aligned_cols=203 Identities=11% Similarity=0.012 Sum_probs=143.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG 195 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 195 (577)
++..+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45677788888888888888888888887764 3356777777788888888888888888877764 346667777777
Q ss_pred HHHhc-CChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008105 196 GLCKR-GQIRSAIALLDEMSVSGCEP-DVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGI 273 (577)
Q Consensus 196 ~~~~~-g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 273 (577)
.+... |++++|.+.++++.+.+..| +...+..+...+...|++++|++.++++.+.. +.+...+..+...+.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 77788 88888888887777622223 25666777777777777777777777776653 44566677777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 274 ARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR 321 (577)
Q Consensus 274 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (577)
++|.+.++++.......+...+..+...+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777666532135555666666667777777777777666544
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=4.1e-11 Score=125.37 Aligned_cols=427 Identities=10% Similarity=0.011 Sum_probs=297.4
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCCHHHH
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDR---IEKASKVLQIMVMSG-GVPDTITY 190 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g-~~~~~~~~ 190 (577)
.|..+|..+++.+.+.+.++.+..+|++++.. ++.....|...+..-.+.++ ++.+.++|++.+... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47899999999999999999999999999997 56688889999998889898 999999999999874 14888999
Q ss_pred HHHHHHHHhcCCh--------HHHHHHHHHHhh-CCC-CC-CHHHHHHHHHHHHh---------CCChHHHHHHHHHHHH
Q 008105 191 NMMVGGLCKRGQI--------RSAIALLDEMSV-SGC-EP-DVITYNTILRTMFD---------NGKFKQAIGFWKDQLR 250 (577)
Q Consensus 191 ~~li~~~~~~g~~--------~~A~~~~~~~~~-~g~-~~-~~~~~~~li~~~~~---------~~~~~~A~~~~~~~~~ 250 (577)
...+....+.++. +...++|+.... .|. .+ +...|...+..... +++++.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 9988876665554 334578887654 465 44 46788888876543 3457788999999885
Q ss_pred CCCCCCHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHH--cCC----C-----------C--C------H
Q 008105 251 KGCPPYLITYTILIEQVCK-------------QCGIARAIEVLDDMAI--EGC----S-----------P--D------I 292 (577)
Q Consensus 251 ~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~--~~~----~-----------~--~------~ 292 (577)
.....-..+|......-.. ..+++.|...+.++.. .++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 3111122333222111111 1123445555544322 111 1 1 0 1
Q ss_pred hhHHHHHHHHHhcC-------CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHhCCCCCCHHH
Q 008105 293 VTYNSLVNFSCKQG-------KYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVD-KILDIMNEASHSPTVFT 364 (577)
Q Consensus 293 ~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~ 364 (577)
..|...+..--..+ ..+.+..+|++++..- .-+...|...+..+...|+.++|. .+++..... .+.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 34555554333322 1234567788887653 336678888888888889999996 999999874 3557777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008105 365 YNILINGLCKYGLVDRAINSFNQMVSKN---------CQPD------------IVTYNTVLGALCKEGMLNEALQLLHLL 423 (577)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~~ 423 (577)
|-..+....+.|++++|.++|+++.... -.|+ ...|...+....+.|..+.|..+|..+
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888999999999999999988641 0132 346888888888889999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--
Q 008105 424 NGSSCSPCLITYNTLIDGLAKK-GCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKM-- 500 (577)
Q Consensus 424 ~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-- 500 (577)
.+....+....|...+..-.+. ++.+.|..+|+...+. .+-+...|...+......|+.+.|..+|++.......+
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 8761122233443333333344 4589999999999875 34467777888888888999999999999998864322
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008105 501 RNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKV 547 (577)
Q Consensus 501 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 547 (577)
....|...+..-.+.|+.+.+.++.+++.+. .|+......+++-|
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 4567888888889999999999999999874 34433333444333
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=6.6e-13 Score=123.11 Aligned_cols=201 Identities=12% Similarity=-0.027 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105 364 TYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLA 443 (577)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 443 (577)
.+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 34444444555555555555555544432 2344444555555555555555555555444432 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHH
Q 008105 444 KKGCMEKAMVLYGQMMENGISP-DDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAI 522 (577)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 522 (577)
..|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555554422223 23444555555555555555555555554432 123444555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105 523 QVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV 568 (577)
Q Consensus 523 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (577)
..++++.+.. +.+...+..+...+...|++++|.++++++.+..+
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 5555555421 23444555555555555666666655555555443
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=8.7e-14 Score=130.85 Aligned_cols=221 Identities=10% Similarity=-0.051 Sum_probs=141.0
Q ss_pred cCChhhHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008105 130 RGKLTDASKLIDIMARRNQI---PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSA 206 (577)
Q Consensus 130 ~g~~~~A~~l~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 206 (577)
.|++++|+..|+++.+.... .+..++..+...+...|++++|.+.|+++.+.. +.+...|..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46788888888888876321 245667777788888888888888888887765 34677788888888888888888
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008105 207 IALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIE 286 (577)
Q Consensus 207 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 286 (577)
.+.|++..+.. +.+..++..+...+...|++++|.+.|+++.+.. |+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 88888877653 3456777777777778888888888887777642 33333333334445567777777777666554
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 008105 287 GCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEP---NSITYNTLLHSLGSRGCWDAVDKILDIMNEA 356 (577)
Q Consensus 287 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 356 (577)
. +++...+ .++..+...++.++|...+++........ +...+..+...+...|++++|...++...+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2 2233333 35555666666666666666665431110 0234444555555555555555555555543
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=8.4e-13 Score=129.48 Aligned_cols=249 Identities=8% Similarity=0.019 Sum_probs=187.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDR-IEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
+...|+.+...+.+.|++++|+..|+++++..+ -+..+|+.+...+.+.|+ +++|+..|+++++.. +.+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 356788899999999999999999999998753 378888999999999996 999999999999876 45788899999
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCH
Q 008105 195 GGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCK-QCGI 273 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 273 (577)
.++.+.|++++|+..|+++.+.. +.+...|..+..++.+.|++++|++.|+++++.. +.+...|+.+...+.+ .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999988775 5578888888889999999999999999988864 5577888888888888 5554
Q ss_pred HHH-----HHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC-----
Q 008105 274 ARA-----IEVLDDMAIEGCSPDIVTYNSLVNFSCKQG--KYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRG----- 341 (577)
Q Consensus 274 ~~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----- 341 (577)
++| ++.|++..... +-+...|+.+...+.+.| ++++|++.+.++ +.. ..+...+..+..+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccccc
Confidence 666 47777777653 235567777777777776 577777777776 321 334556666777776653
Q ss_pred ----CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 008105 342 ----CWDAVDKILDIM-NEASHSPTVFTYNILINGL 372 (577)
Q Consensus 342 ----~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~ 372 (577)
..++|.++++.+ .+.. +.....|..+...+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 246777777776 4432 22334444444433
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=9.9e-14 Score=130.47 Aligned_cols=222 Identities=11% Similarity=-0.043 Sum_probs=142.9
Q ss_pred hcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHH
Q 008105 164 RIDRIEKASKVLQIMVMSGG---VPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQ 240 (577)
Q Consensus 164 ~~g~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 240 (577)
..|++++|++.|+++.+... +.+...|..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 44678888888888877532 1245667777788888888888888888877654 4467777778888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 241 AIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLS 320 (577)
Q Consensus 241 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 320 (577)
|++.|++.++.. +.+..++..+...+.+.|++++|.+.|+++... .|+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888777653 445667777777777777777777777777765 34433444444455566777777777766655
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008105 321 RGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHS---PTVFTYNILINGLCKYGLVDRAINSFNQMVSK 391 (577)
Q Consensus 321 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 391 (577)
.. +++...+ .++..+...++.++|...++...+.... .+...+..+...|.+.|++++|...|++..+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 42 2222222 3455555666666666666665543211 01345555666666666666666666666554
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=6.4e-13 Score=124.72 Aligned_cols=234 Identities=10% Similarity=0.012 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD--TITYNMMVG 195 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~ 195 (577)
..+......+...|++++|+..|+++.+..+ .+...+..+...+...|++++|++.+++..+.+..++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3455667777888888888888888877642 3555777777788888888888888888777331121 234677777
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105 196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR 275 (577)
Q Consensus 196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 275 (577)
.|...|++++|.+.|++..+.. +.+..+|..+...|...|++++|++.|++.++. .+.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888887777653 345567777777777777777777777776654 24455556555523334457777
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHhhCC-CCCC------HHHHHHHHHHHHccCCHHH
Q 008105 276 AIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGK---YDDAVLVINNLLSRG-MEPN------SITYNTLLHSLGSRGCWDA 345 (577)
Q Consensus 276 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~ll~~~~~~g~~~~ 345 (577)
|.+.|+++.+.. +.+...+..+...+...|+ +++|...+++..+.. -.|+ ..+|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 777777766653 2234555555555555555 555555555554321 0111 1233334444444444444
Q ss_pred HHHHHHHHHh
Q 008105 346 VDKILDIMNE 355 (577)
Q Consensus 346 a~~~~~~~~~ 355 (577)
|...++...+
T Consensus 240 A~~~~~~al~ 249 (272)
T 3u4t_A 240 ADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444444
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=1.2e-12 Score=118.88 Aligned_cols=203 Identities=10% Similarity=-0.063 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008105 362 VFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDG 441 (577)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 441 (577)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.... +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3344444555555555555555555554432 2334455555555555555555555555554432 3344455555555
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChH
Q 008105 442 LAKK-GCMEKAMVLYGQMMENGISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVD 519 (577)
Q Consensus 442 ~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 519 (577)
+... |++++|...++++.+.+..|+ ...+..+...+...|++++|.+.++++.+... .+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHH
Confidence 5555 555555555555554211222 34455555555555555555555555554321 13445555555555556666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008105 520 MAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWK 567 (577)
Q Consensus 520 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (577)
+|.+.++++.+.....+...+..+...+...|+.++|..+++.+.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 666665555542211344445555555555566666665555555443
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=2.2e-13 Score=125.46 Aligned_cols=203 Identities=8% Similarity=0.028 Sum_probs=150.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM 193 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 193 (577)
......|..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 3456778888999999999999999999998864 3478888888999999999999999999998875 4577888888
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008105 194 VGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGI 273 (577)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 273 (577)
...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCH
Confidence 999999999999999999988764 4577888888888999999999999999888763 45677888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 274 ARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR 321 (577)
Q Consensus 274 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (577)
++|.+.++++.... +.+..++..+...+.+.|++++|...++++.+.
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 88888888887763 335677888888888888888888888888775
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=1.4e-12 Score=122.42 Aligned_cols=245 Identities=12% Similarity=0.051 Sum_probs=150.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 008105 295 YNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSP--TVFTYNILINGL 372 (577)
Q Consensus 295 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~ 372 (577)
+......+...|++++|+..+++..+... .+...+..+..++...|++++|...++...+....+ ....|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 44455556666666666666666665531 133355566666666666666666666666532111 123366677777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008105 373 CKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAM 452 (577)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 452 (577)
...|++++|+..|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776653 3455667777777777777777777777776653 445566666662333345778888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCC-CCcc------HHHHHHHHHHHHhcCChHHHH
Q 008105 453 VLYGQMMENGISPDDITHRTLIWGFCRADQ---VEEAVDLLKEIGKRG-NKMR------NSAYRLVIHGLCKSKKVDMAI 522 (577)
Q Consensus 453 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~~~------~~~~~~li~~~~~~g~~~~A~ 522 (577)
+.|+++.+.. +.+...+..+...+...|+ +++|...+++..+.. ..|+ ...|..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8887777642 2235666667777777776 667777777765421 1122 245666777777788888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH
Q 008105 523 QVLELMISSRYKPDDTVFSTIV 544 (577)
Q Consensus 523 ~~~~~m~~~~~~p~~~~~~~l~ 544 (577)
+.++++.+.. +-+...+..+.
T Consensus 242 ~~~~~al~~~-p~~~~a~~~l~ 262 (272)
T 3u4t_A 242 AAWKNILALD-PTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHC
T ss_pred HHHHHHHhcC-ccHHHHHHHhh
Confidence 8888777532 22344444443
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=1e-12 Score=128.86 Aligned_cols=249 Identities=12% Similarity=0.042 Sum_probs=193.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008105 151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQ-IRSAIALLDEMSVSGCEPDVITYNTIL 229 (577)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li 229 (577)
+...|..+...+.+.|++++|++.++++++.. +-+...|+.+...+...|+ +++|+..|+++.+.. +.+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34567777888889999999999999999876 4578889999999999997 999999999998775 55788999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-cCCH
Q 008105 230 RTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCK-QGKY 308 (577)
Q Consensus 230 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~ 308 (577)
.++...|++++|+..|+++++.. +-+...|..+...+.+.|++++|++.+++++... +.+...|+.+..++.+ .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999998874 6688889999999999999999999999998875 3367888888888888 5655
Q ss_pred HHH-----HHHHHHHhhCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----
Q 008105 309 DDA-----VLVINNLLSRGMEPNSITYNTLLHSLGSRG--CWDAVDKILDIMNEASHSPTVFTYNILINGLCKYG----- 376 (577)
Q Consensus 309 ~~A-----~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----- 376 (577)
++| +..+++.+.... -+...|..+...+...| ++++|.+.+..+ +. .+.+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 777 477777776532 24567777777777777 578888888777 33 3456677778888887764
Q ss_pred ----CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 008105 377 ----LVDRAINSFNQM-VSKNCQPDIVTYNTVLGAL 407 (577)
Q Consensus 377 ----~~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~ 407 (577)
..++|+++|+++ .+.+ +.....|..+...+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247888888887 5542 33344455444443
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=5.2e-13 Score=122.95 Aligned_cols=199 Identities=13% Similarity=0.094 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008105 327 SITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGA 406 (577)
Q Consensus 327 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 406 (577)
...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|+..++++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3445555556666666666666666666543 2345566666666666666666666666666543 3355556666666
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008105 407 LCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEA 486 (577)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 486 (577)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666655543 3345555666666666666666666666665432 23455555566666666666666
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 487 VDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 487 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
.+.++++.+... .+..++..+...+...|++++|.+.++++.+
T Consensus 179 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 666666555321 2344555566666666666666666666654
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=8.7e-13 Score=132.03 Aligned_cols=202 Identities=13% Similarity=0.075 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCH
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDF----HFCINLIRGLIRIDRIEKASKVLQIMVMS----G-GVPDT 187 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g-~~~~~ 187 (577)
...+..+...+...|++++|+..|+++.+.+.. +. .++..+...+...|++++|.+.+++..+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345567788899999999999999999887432 33 46778888889999999999999887653 1 12234
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC----C-CCCCHHHHHHHHHHHHhCCC-----------------hHHHHHHH
Q 008105 188 ITYNMMVGGLCKRGQIRSAIALLDEMSVS----G-CEPDVITYNTILRTMFDNGK-----------------FKQAIGFW 245 (577)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g-~~~~~~~~~~li~~~~~~~~-----------------~~~A~~~~ 245 (577)
..+..+...|...|++++|.+.+++..+. + ......++..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 56777888888889998888888876543 1 01224466667777777777 77777766
Q ss_pred HHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHH
Q 008105 246 KDQLRK----GC-PPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCS-PD----IVTYNSLVNFSCKQGKYDDAVLVI 315 (577)
Q Consensus 246 ~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~ 315 (577)
++..+. +. +....++..+...+...|++++|.+.+++....... ++ ...+..+...|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 665432 10 111234555555566666666666666555432100 01 114444555555555555555555
Q ss_pred HHHh
Q 008105 316 NNLL 319 (577)
Q Consensus 316 ~~m~ 319 (577)
++..
T Consensus 287 ~~al 290 (411)
T 4a1s_A 287 KRTL 290 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=6.8e-13 Score=132.39 Aligned_cols=275 Identities=12% Similarity=0.040 Sum_probs=171.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-
Q 008105 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPD----FHFCINLIRGLIRIDRIEKASKVLQIMVMS----GGV- 184 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~- 184 (577)
.+....+......+.+.|++++|...|+++.+.+.. + ..++..+...+...|++++|...+++.... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345667788889999999999999999999887432 3 356777888889999999999998887543 211
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhCCC--------------------hH
Q 008105 185 PDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGC-EPD----VITYNTILRTMFDNGK--------------------FK 239 (577)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~~~--------------------~~ 239 (577)
....++..+...|...|++++|...+++..+... .++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 1245677788888889999999988887764310 012 4467777778888888 77
Q ss_pred HHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCCHH
Q 008105 240 QAIGFWKDQLRK----GC-PPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGC-SPD----IVTYNSLVNFSCKQGKYD 309 (577)
Q Consensus 240 ~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~ 309 (577)
+|.+.+++.... +. +....++..+...+...|++++|.+.+++...... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 777777765442 10 11133566666677777777777777776654210 011 125566666666777777
Q ss_pred HHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC----C-CCHHHHHHHHHHHHHcCCHH
Q 008105 310 DAVLVINNLLSRGME-PN----SITYNTLLHSLGSRGCWDAVDKILDIMNEASH----S-PTVFTYNILINGLCKYGLVD 379 (577)
Q Consensus 310 ~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~-~~~~~~~~li~~~~~~g~~~ 379 (577)
+|...+++..+.... ++ ..++..+...+...|++++|...++...+... . ....++..+...|.+.|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 777666665432100 01 23445555556666666666666555443210 0 01334445555555555655
Q ss_pred HHHHHHHHHH
Q 008105 380 RAINSFNQMV 389 (577)
Q Consensus 380 ~A~~~~~~m~ 389 (577)
+|...+++..
T Consensus 325 ~A~~~~~~al 334 (406)
T 3sf4_A 325 QAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=1.2e-12 Score=130.97 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHH
Q 008105 258 ITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDI----VTYNSLVNFSCKQGKYDDAVLVINNLLSR----GMEP-NSI 328 (577)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ 328 (577)
..+..+...+...|++++|.+.|+++...+. .+. ..|..+...|...|++++|...+++..+. +..| ...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3344555667777777888777777776531 122 35666777777777777777777766542 1111 223
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHHcCC
Q 008105 329 TYNTLLHSLGSRGCWDAVDKILDIMNEA----S-HSPTVFTYNILINGLCKYGL 377 (577)
Q Consensus 329 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~ 377 (577)
++..+...|...|++++|...+++..+. + .+....++..+...|...|+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 5555666666666666666666665432 1 11123345555556666666
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=1.7e-12 Score=129.52 Aligned_cols=302 Identities=13% Similarity=0.025 Sum_probs=153.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCC-C
Q 008105 185 PDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPD----VITYNTILRTMFDNGKFKQAIGFWKDQLRK----GCP-P 255 (577)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~-~ 255 (577)
.....+......+...|++++|...|++..+.+ +.+ ...+..+...+...|++++|...+++.... +.+ .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 344455556666666677777777776666542 222 244555666666666666666666655432 101 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008105 256 YLITYTILIEQVCKQCGIARAIEVLDDMAIEGCS-PDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLL 334 (577)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 334 (577)
...++..+...+...|++++|...+++....... ++. .....++..+.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~ 134 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLG 134 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHH
Confidence 1233444444555555555555555544432100 000 00012333444
Q ss_pred HHHHccCC--------------------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008105 335 HSLGSRGC--------------------WDAVDKILDIMNEA----SH-SPTVFTYNILINGLCKYGLVDRAINSFNQMV 389 (577)
Q Consensus 335 ~~~~~~g~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 389 (577)
..+...|+ +++|...++...+. +. +....++..+...|...|++++|...+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444444 44444444433221 10 1112345566666667777777777766665
Q ss_pred HCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105 390 SKNC-QPD----IVTYNTVLGALCKEGMLNEALQLLHLLNGSS----CSP-CLITYNTLIDGLAKKGCMEKAMVLYGQMM 459 (577)
Q Consensus 390 ~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 459 (577)
+... .++ ..++..+...+...|++++|...+++..... ..+ ...++..+...|...|++++|...+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4210 011 2255566666666677777766666554321 000 13455666667777777777777777665
Q ss_pred HCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-ccHHHHHHHHHHHHhcCCh
Q 008105 460 ENGI-SPD----DITHRTLIWGFCRADQVEEAVDLLKEIGKR----GNK-MRNSAYRLVIHGLCKSKKV 518 (577)
Q Consensus 460 ~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~ 518 (577)
+..- .++ ..++..+...|...|++++|.+.+++..+. +.. ....++..+...+...|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 4210 011 345666666777777777777777765431 111 1133445555555555544
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=1.2e-11 Score=108.50 Aligned_cols=167 Identities=11% Similarity=0.095 Sum_probs=121.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG 195 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 195 (577)
++.+|..+...|.+.|++++|++.|++.++..+ -+..++..+...+.+.|++++|.+.++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 456777888888888888888888888877643 367777777777888888888888887777664 345666666777
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105 196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR 275 (577)
Q Consensus 196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 275 (577)
.+...++++.|.+.+++..... +.+...+..+...+.+.|++++|++.|++.++.. |.+..+|..+...+.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 7777778888877777776553 4456677777777777777777777777777653 4566677777777777777777
Q ss_pred HHHHHHHHHHc
Q 008105 276 AIEVLDDMAIE 286 (577)
Q Consensus 276 A~~~~~~~~~~ 286 (577)
|.+.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777777654
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=1e-10 Score=111.97 Aligned_cols=187 Identities=10% Similarity=0.023 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 008105 379 DRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLI-TYNTLIDGLAKKGCMEKAMVLYGQ 457 (577)
Q Consensus 379 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~ 457 (577)
++|..+|++.++.-.+.+...|..++..+.+.|++++|..+|+++.+.. +.+.. .|..++..+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4555555555442112233445555555555555555555555554431 11122 455555555555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC
Q 008105 458 MMENGISPDDITHRTLIWGFC-RADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSR-YKP 535 (577)
Q Consensus 458 m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p 535 (577)
.++.. +++...|........ ..|++++|.++|++..+... -+...|..++..+.+.|++++|..+|++.++.. +.|
T Consensus 160 a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 55432 122223322222211 13555555555555544321 134445555555555555555555555555431 233
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105 536 --DDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV 568 (577)
Q Consensus 536 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (577)
....|..++....+.|+.++|..+++++.+..+
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 234455555555555555555555555555433
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=1.7e-12 Score=125.52 Aligned_cols=201 Identities=13% Similarity=0.084 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPD----FHFCINLIRGLIRIDRIEKASKVLQIMVMS----GG-VPDTI 188 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~-~~~~~ 188 (577)
..+......+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.+++..+. +. +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34555677888888888888888888876422 3 356677778888888888888888776543 11 11245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhCCC--------------------hHHHHH
Q 008105 189 TYNMMVGGLCKRGQIRSAIALLDEMSVSGC-EPD----VITYNTILRTMFDNGK--------------------FKQAIG 243 (577)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~~~--------------------~~~A~~ 243 (577)
.+..+...|...|++++|.+.+++..+... .++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 667777777788888888887777653210 112 3356666666777777 666666
Q ss_pred HHHHHHHC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCCHHHHHH
Q 008105 244 FWKDQLRK----G-CPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCS-PD----IVTYNSLVNFSCKQGKYDDAVL 313 (577)
Q Consensus 244 ~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~ 313 (577)
.+++.... + .+....++..+...+...|++++|.+.+++....... ++ ..++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66554431 1 0111224444555555556666555555554432000 00 1234444444555555555555
Q ss_pred HHHHHh
Q 008105 314 VINNLL 319 (577)
Q Consensus 314 ~~~~m~ 319 (577)
.+++..
T Consensus 245 ~~~~al 250 (338)
T 3ro2_A 245 YYKKTL 250 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=8.7e-11 Score=112.41 Aligned_cols=219 Identities=6% Similarity=-0.066 Sum_probs=104.2
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008105 134 TDASKLIDIMARRNQIPDFHFCINLIRGLIR-------IDRI-------EKASKVLQIMVMSGGVPDTITYNMMVGGLCK 199 (577)
Q Consensus 134 ~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 199 (577)
++|..+|++++... +.+...|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46666666666652 3355566666555542 3553 5555555555552112234455555555555
Q ss_pred cCChHHHHHHHHHHhhCCCCCC-HH-HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008105 200 RGQIRSAIALLDEMSVSGCEPD-VI-TYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAI 277 (577)
Q Consensus 200 ~g~~~~A~~~~~~~~~~g~~~~-~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 277 (577)
.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|.++|++.++.. +.+...|.........
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~-------- 180 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYY-------- 180 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHH--------
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH--------
Confidence 55555555555555543 222 22 45555555555555555555555554432 2222222222111111
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 008105 278 EVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEAS 357 (577)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 357 (577)
..|++++|..+|++..+... -+...|..++..+.+.|+.++|..+|++..+..
T Consensus 181 --------------------------~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 181 --------------------------CSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp --------------------------TSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred --------------------------HcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence 13455555555554444311 133444444445555555555555555555431
Q ss_pred -CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008105 358 -HSP--TVFTYNILINGLCKYGLVDRAINSFNQMVSK 391 (577)
Q Consensus 358 -~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 391 (577)
.+| ....|..++....+.|+.+.|..+++++.+.
T Consensus 234 ~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 122 2344555555555555555555555555543
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.45 E-value=2.9e-12 Score=123.92 Aligned_cols=274 Identities=14% Similarity=0.054 Sum_probs=155.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008105 262 ILIEQVCKQCGIARAIEVLDDMAIEGCSPD----IVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSL 337 (577)
Q Consensus 262 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 337 (577)
.....+...|++++|...|+++..... .+ ...+..+...+...|++++|...+++..+..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------- 73 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--------------- 73 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---------------
Confidence 344455566666666666666655421 12 2344555555556666666665555543210
Q ss_pred HccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcC
Q 008105 338 GSRGCWDAVDKILDIMNEASH-SPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNC-QPD----IVTYNTVLGALCKEG 411 (577)
Q Consensus 338 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g 411 (577)
...+. +....++..+...|...|++++|...+++..+... .++ ..++..+...+...|
T Consensus 74 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 74 ----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp ----------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 00000 01123344444455555555555555544433200 011 224444555555555
Q ss_pred C--------------------hhHHHHHHHHHhhC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC
Q 008105 412 M--------------------LNEALQLLHLLNGS----S-CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGI-SP 465 (577)
Q Consensus 412 ~--------------------~~~A~~~~~~~~~~----~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p 465 (577)
+ +++|...+++.... + .+.....+..+...+...|++++|...+++..+... .+
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 5 55555555443221 1 011234566777777888888888888887754210 01
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C
Q 008105 466 D----DITHRTLIWGFCRADQVEEAVDLLKEIGKR----GNKM-RNSAYRLVIHGLCKSKKVDMAIQVLELMISS----R 532 (577)
Q Consensus 466 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~ 532 (577)
+ ..++..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+. +
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 1 236777778888888888888888877542 1111 1456777888888899999999988887642 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008105 533 Y-KPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWK 567 (577)
Q Consensus 533 ~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (577)
- .....++..+...+.+.|++++|...+++..+..
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 1 1114467778888999999999999999888754
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=2e-11 Score=120.94 Aligned_cols=162 Identities=11% Similarity=-0.003 Sum_probs=83.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCC--CC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC-----CHhhHH
Q 008105 228 ILRTMFDNGKFKQAIGFWKDQLRKG--CP--P-YLITYTILIEQVCKQCGIARAIEVLDDMAIEGC-SP-----DIVTYN 296 (577)
Q Consensus 228 li~~~~~~~~~~~A~~~~~~~~~~~--~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~-----~~~~~~ 296 (577)
....+...|++++|++.|++..+.- .+ + ...++..+...+...|++++|.+.+++...... .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4445566677777777777765431 11 1 234556666666667777777766666554210 01 123555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHHHHH
Q 008105 297 SLVNFSCKQGKYDDAVLVINNLLSRGME-PN----SITYNTLLHSLGSRGCWDAVDKILDIMNEA----SH-SPTVFTYN 366 (577)
Q Consensus 297 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 366 (577)
.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6666666666666666666665432100 01 124444555555555555555555554431 11 22334455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 008105 367 ILINGLCKYGLVDRAINSFNQMV 389 (577)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~ 389 (577)
.+...|.+.|++++|...+++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555555443
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=2e-11 Score=120.86 Aligned_cols=231 Identities=7% Similarity=-0.066 Sum_probs=158.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 008105 333 LLHSLGSRGCWDAVDKILDIMNEA----SHSP-TVFTYNILINGLCKYGLVDRAINSFNQMVSKN--C----QPDIVTYN 401 (577)
Q Consensus 333 ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~----~~~~~~~~ 401 (577)
....+...|++++|...++...+. +.++ ...++..+...|...|++++|+..+++..+.. . +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334456667777777777776543 1111 23466777777777788888877777766431 0 11234667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 008105 402 TVLGALCKEGMLNEALQLLHLLNGS----SC-SPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN----GI-SPDDITHR 471 (577)
Q Consensus 402 ~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~ 471 (577)
.+...|...|++++|...+++..+. +. .....++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777788888888888888766542 10 111246778888899999999999999888761 22 33466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC----CCCccHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 008105 472 TLIWGFCRADQVEEAVDLLKEIGKR----GNKMRNSAYRLVIHGLCKSKK---VDMAIQVLELMISSRYKPD-DTVFSTI 543 (577)
Q Consensus 472 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l 543 (577)
.+...|.+.|++++|.+.+++..+. +-+.....+..+...+...|+ +++|..++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8889999999999999999887652 112223335667778888888 77777777766 33333 4567778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 008105 544 VKKVADDGMTEEAYKLWQKLIEW 566 (577)
Q Consensus 544 ~~~~~~~g~~~~A~~~~~~~~~~ 566 (577)
...|...|++++|.+.+++..+.
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 88999999999999999998764
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=4.1e-11 Score=105.07 Aligned_cols=167 Identities=15% Similarity=0.062 Sum_probs=127.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105 151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR 230 (577)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 230 (577)
+..+|..+...+.+.|++++|++.|++.++.. +-+...|..+...|.+.|++++|...+++..... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56677888888888888888888888888775 4467778888888888888888888888877654 446667777777
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH
Q 008105 231 TMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDD 310 (577)
Q Consensus 231 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 310 (577)
.+...++++.|.+.+.+..... +.+...+..+...+.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 7788888888888888777653 5567777777778888888888888888877764 3356677777788888888888
Q ss_pred HHHHHHHHhhC
Q 008105 311 AVLVINNLLSR 321 (577)
Q Consensus 311 A~~~~~~m~~~ 321 (577)
|++.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88888877765
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=2.4e-11 Score=123.61 Aligned_cols=209 Identities=8% Similarity=-0.065 Sum_probs=103.8
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008105 133 LTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRI-EKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLD 211 (577)
Q Consensus 133 ~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 211 (577)
++++++.+++.... .+.+...+..+...+...|++ ++|++.|++.++.. +.+...|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444455544433 223455555555555555666 66666665555543 2345555555555556666666666665
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhC---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHH
Q 008105 212 EMSVSGCEPDVITYNTILRTMFDN---------GKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQ--------CGIA 274 (577)
Q Consensus 212 ~~~~~g~~~~~~~~~~li~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 274 (577)
+..+. .|+...+..+...+... |++++|++.|++.++.. +.+...|..+...|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 55544 34455555555555555 55555555555555442 33445555555555554 5555
Q ss_pred HHHHHHHHHHHcCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 008105 275 RAIEVLDDMAIEGCS--PDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVD 347 (577)
Q Consensus 275 ~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 347 (577)
+|.+.|++..+.... .+...|..+...|...|++++|.+.|++..+... -+...+..+..++...|++++|.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555443200 2344444555555555555555555555444321 12233444444444444444443
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=4.6e-12 Score=121.22 Aligned_cols=202 Identities=16% Similarity=0.033 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC------C-CC
Q 008105 364 TYNILINGLCKYGLVDRAINSFNQMVSK------N-CQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGS------S-CS 429 (577)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~ 429 (577)
.+..+...|...|++++|...+++.... + .+....++..+...+...|++++|...++++.+. + .+
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3344444444444444444444444332 0 1112334444445555555555555555444332 1 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------
Q 008105 430 PCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN------GISP-DDITHRTLIWGFCRADQVEEAVDLLKEIGKR------ 496 (577)
Q Consensus 430 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 496 (577)
.....+..+...+...|++++|.+.++++.+. +..| ...++..+...|...|++++|.+.++++.+.
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 22344556666666667777777766666542 1112 2345666667777777777777777766542
Q ss_pred -CCCcc-------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105 497 -GNKMR-------NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEW 566 (577)
Q Consensus 497 -~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (577)
...+. ...+..+...+...+.+.+|...++..... .+.+..++..+..+|.+.|++++|.+++++.++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11111 112223333344556666666677766542 1234567788888999999999999999888774
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=3.4e-11 Score=115.13 Aligned_cols=242 Identities=12% Similarity=0.048 Sum_probs=173.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 008105 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARR-------NQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS----- 181 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 181 (577)
+.+..++..+...|...|++++|..+|+++.+. ..+....++..+...+...|++++|.+.+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 445688999999999999999999999999873 23345667888999999999999999999998764
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC-
Q 008105 182 -GG-VPDTITYNMMVGGLCKRGQIRSAIALLDEMSVS------GC-EPDVITYNTILRTMFDNGKFKQAIGFWKDQLRK- 251 (577)
Q Consensus 182 -g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------g~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~- 251 (577)
+. +.....+..+...|...|++++|.+.|++..+. +- +.....+..+...+...|++++|++.+++....
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 21 234567888999999999999999999988754 21 224567888899999999999999999998764
Q ss_pred -----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCCHh-------hHHHHHHHHHhcCCHHHH
Q 008105 252 -----G-CPPYLITYTILIEQVCKQCGIARAIEVLDDMAIE-------GCSPDIV-------TYNSLVNFSCKQGKYDDA 311 (577)
Q Consensus 252 -----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~-------~~~~li~~~~~~g~~~~A 311 (577)
+ .+....++..+...+...|++++|.+.++++... ...+... .+..+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 2 1223457888899999999999999999998763 1112111 122223334444555566
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 008105 312 VLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEA 356 (577)
Q Consensus 312 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 356 (577)
...++...... ..+..++..+..+|.+.|++++|.+.+++..+.
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 264 GGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp C---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 66666665432 224567888999999999999999999988753
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.36 E-value=3.8e-11 Score=122.15 Aligned_cols=211 Identities=9% Similarity=-0.035 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008105 204 RSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKF-KQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDD 282 (577)
Q Consensus 204 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 282 (577)
+++...+++..... +.+...+..+...+...|++ ++|++.|++.++.. +.+...|..+...|.+.|++++|.+.|++
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444443322 23455555555555555555 55555555555442 33455555555555555555555555555
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhc---------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc--------CCHHH
Q 008105 283 MAIEGCSPDIVTYNSLVNFSCKQ---------GKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSR--------GCWDA 345 (577)
Q Consensus 283 ~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------g~~~~ 345 (577)
.... .|+...+..+...+... |++++|+..+++..+.. +.+...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 5544 24445555555555555 55555555555555442 11344555555555554 55555
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 008105 346 VDKILDIMNEASHS--PTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLL 420 (577)
Q Consensus 346 a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 420 (577)
|...|+...+.... .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+...+...|++++|...+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555543210 245555555556666666666666666555543 334445555555555555555555433
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=9.3e-10 Score=108.38 Aligned_cols=300 Identities=11% Similarity=0.006 Sum_probs=196.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCH----HHHH
Q 008105 261 TILIEQVCKQCGIARAIEVLDDMAIEGCSPDIV----TYNSLVNFSCKQGKYDDAVLVINNLLSRGME-PNS----ITYN 331 (577)
Q Consensus 261 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~~~~ 331 (577)
......+...|++++|...+++........+.. .++.+...+...|++++|...+++....... .+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344456677899999999999887754222222 4566677788889999999998887653111 122 2345
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C--CHHHH
Q 008105 332 TLLHSLGSRGCWDAVDKILDIMNEA----SHS--P-TVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQ--P--DIVTY 400 (577)
Q Consensus 332 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~--~~~~~ 400 (577)
.+...+...|++++|...+++..+. +.+ | ....+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6667788889999999888877643 221 2 2345666778888889999999998887764211 1 23456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHH
Q 008105 401 NTVLGALCKEGMLNEALQLLHLLNGSSCSPC-LITYN-----TLIDGLAKKGCMEKAMVLYGQMMENGISP---DDITHR 471 (577)
Q Consensus 401 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~ 471 (577)
..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++..+....+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7777788888999999988887754311111 11121 23344678889999988888876533211 123456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh----CCCCccH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008105 472 TLIWGFCRADQVEEAVDLLKEIGK----RGNKMRN-SAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKK 546 (577)
Q Consensus 472 ~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 546 (577)
.+...+...|++++|.+.+++... .+..++. ..+..+..++...|+.++|...+++..... +. ...+..
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~~ 331 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFISH 331 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHHH
Confidence 777888888999999888887754 2222222 256666777888889999998888887531 10 112344
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC
Q 008105 547 VADDGMTEEAYKLWQKLIEWKV 568 (577)
Q Consensus 547 ~~~~g~~~~A~~~~~~~~~~~~ 568 (577)
+...| +....+++.+....+
T Consensus 332 ~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 332 FVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHcc--HHHHHHHHHHHhCCC
Confidence 55555 667777777776554
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=8.1e-10 Score=108.81 Aligned_cols=234 Identities=11% Similarity=0.022 Sum_probs=131.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHH
Q 008105 120 NNKILQNFCSRGKLTDASKLIDIMARRNQIPDFH----FCINLIRGLIRIDRIEKASKVLQIMVMSGG-VPD----TITY 190 (577)
Q Consensus 120 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~ 190 (577)
.......+...|++++|...+++........+.. +++.+...+...|++++|.+.+++...... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444566777888999999888887764322222 455566677778888888888887765311 111 1234
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhC----CCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC----CCHHH
Q 008105 191 NMMVGGLCKRGQIRSAIALLDEMSVS----GCE--P-DVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCP----PYLIT 259 (577)
Q Consensus 191 ~~li~~~~~~g~~~~A~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~ 259 (577)
..+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 55666777788888888777776532 211 2 2334555666777777777777777776653211 12234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-hhHH-----HHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHH
Q 008105 260 YTILIEQVCKQCGIARAIEVLDDMAIEGCSPDI-VTYN-----SLVNFSCKQGKYDDAVLVINNLLSRGMEPN---SITY 330 (577)
Q Consensus 260 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~ 330 (577)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 555666666677777777777666542111110 1111 122335566666666666666554321111 1123
Q ss_pred HHHHHHHHccCCHHHHHHHHHHH
Q 008105 331 NTLLHSLGSRGCWDAVDKILDIM 353 (577)
Q Consensus 331 ~~ll~~~~~~g~~~~a~~~~~~~ 353 (577)
..+...+...|++++|...++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444455555555555555444
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=2.4e-10 Score=99.79 Aligned_cols=170 Identities=17% Similarity=0.143 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008105 398 VTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGF 477 (577)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 477 (577)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555666666777777777777666543 3456667777777777777777777777776642 33566777777777
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008105 478 CRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAY 557 (577)
Q Consensus 478 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 557 (577)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 77888888888887776653 2356677777778888888888888888877643 345677778888888888888888
Q ss_pred HHHHHHHHcCCCCC
Q 008105 558 KLWQKLIEWKVFEK 571 (577)
Q Consensus 558 ~~~~~~~~~~~~~~ 571 (577)
+.++++.+..+...
T Consensus 165 ~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 165 PHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCch
Confidence 88888877655443
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=5.4e-10 Score=110.30 Aligned_cols=226 Identities=9% Similarity=0.029 Sum_probs=144.1
Q ss_pred HHHccCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CC----CCHHHHHHHH
Q 008105 336 SLGSRGCWDAVDKILDIMNEASH-SP----TVFTYNILINGLCKYGLVDRAINSFNQMVSKN--CQ----PDIVTYNTVL 404 (577)
Q Consensus 336 ~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~----~~~~~~~~li 404 (577)
.+...|++++|...+++..+... .+ ...++..+...|...|+++.|+..+++..+.. .. ....+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34556666777666666654311 01 23456666667777777777777776665421 00 1134566667
Q ss_pred HHHHhcCChhHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 008105 405 GALCKEGMLNEALQLLHLLNGS----SCS-PCLITYNTLIDGLAKKGCMEKAMVLYGQMME-----NGISPDDITHRTLI 474 (577)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~li 474 (577)
..|...|++++|...+++..+. +.. ....++..+...|...|++++|.+.|++..+ .. +....++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence 7777777777777777665442 111 1234567777888888888888888888765 32 22356777788
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCC----CCccHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 008105 475 WGFCRADQVEEAVDLLKEIGKRG----NKMRNSAYRLVIHGLCKSKK---VDMAIQVLELMISSRYKPD-DTVFSTIVKK 546 (577)
Q Consensus 475 ~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~ 546 (577)
..+.+.|++++|.+.+++..+.. .+.....+..+...+...|+ +++|+..+++. +..|+ ...+..+...
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHH
Confidence 88888888888888888876521 12223345555566666777 77777777663 32333 3456678888
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 008105 547 VADDGMTEEAYKLWQKLIE 565 (577)
Q Consensus 547 ~~~~g~~~~A~~~~~~~~~ 565 (577)
|...|++++|...+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 8888999988888888765
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=3.1e-10 Score=99.12 Aligned_cols=164 Identities=10% Similarity=0.067 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL 197 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 197 (577)
..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456667777777777777777777776653 2356666777777777777777777777776654 34566666677777
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008105 198 CKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAI 277 (577)
Q Consensus 198 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 277 (577)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777766543 3456666666666667777777777776666543 345556666666666666666666
Q ss_pred HHHHHHHH
Q 008105 278 EVLDDMAI 285 (577)
Q Consensus 278 ~~~~~~~~ 285 (577)
+.++++..
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=1.4e-10 Score=122.87 Aligned_cols=166 Identities=13% Similarity=0.090 Sum_probs=149.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG 195 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 195 (577)
+..+++.|...|.+.|++++|++.|++.++... -+..+++.+...|.+.|++++|++.|++.++.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 468899999999999999999999999999753 378899999999999999999999999999875 446889999999
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105 196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR 275 (577)
Q Consensus 196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 275 (577)
+|.+.|++++|.+.|++..+.. +-+...|+.+..+|.+.|++++|++.|++.++.. +-+...+..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999998764 4578899999999999999999999999999874 5578899999999999999999
Q ss_pred HHHHHHHHHH
Q 008105 276 AIEVLDDMAI 285 (577)
Q Consensus 276 A~~~~~~~~~ 285 (577)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887764
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=8.6e-10 Score=108.86 Aligned_cols=229 Identities=8% Similarity=-0.037 Sum_probs=155.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC----C-C-CCHHHHH
Q 008105 298 LVNFSCKQGKYDDAVLVINNLLSRGM-EPN----SITYNTLLHSLGSRGCWDAVDKILDIMNEAS----H-S-PTVFTYN 366 (577)
Q Consensus 298 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~-~~~~~~~ 366 (577)
....+...|++++|...+++..+... .++ ..++..+...|...|+++.|...+++..+.. . . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456677888888888777765411 122 2356667777778888888887777665421 0 1 1244677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCHHHHH
Q 008105 367 ILINGLCKYGLVDRAINSFNQMVSK----NCQ-PDIVTYNTVLGALCKEGMLNEALQLLHLLNG-----SSCSPCLITYN 436 (577)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 436 (577)
.+...|...|++++|.+.|++..+. +.. ....++..+...|...|++++|...+++... .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7888888888888888888877653 101 1234667778888888898888888887766 43 33366788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCc-cHHHHHHH
Q 008105 437 TLIDGLAKKGCMEKAMVLYGQMMENGI---SPD-DITHRTLIWGFCRADQ---VEEAVDLLKEIGKRGNKM-RNSAYRLV 508 (577)
Q Consensus 437 ~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~-~~~~~~~l 508 (577)
.+...|.+.|++++|...+++..+..- .|. ...+..+...+...|+ +++|..++++.. ..| ....+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHH
Confidence 888889999999999999998876311 122 3345556666667777 777777776632 222 23456678
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 008105 509 IHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 509 i~~~~~~g~~~~A~~~~~~m~~ 530 (577)
...|...|++++|.+.+++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8889999999999999988764
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=8.8e-10 Score=100.21 Aligned_cols=201 Identities=13% Similarity=0.018 Sum_probs=157.0
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
.|+..+......+.+.|++++|+..|++.++...+++...+..+..++.+.|++++|++.|++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46788999999999999999999999999998765788888889999999999999999999999875 34677899999
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 008105 195 GGLCKRGQIRSAIALLDEMSVSGCEPDV-------ITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPP--YLITYTILIE 265 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 265 (577)
..|...|++++|.+.|++..+.. +.+. ..|..+...+...|++++|++.|++.++.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 99999999999999999998763 3345 557888888999999999999999998752 33 3567777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 008105 266 QVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSI 328 (577)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 328 (577)
.+...| ...++++...+ ..+...|.... ....+.+++|+..+++..+. .|+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 776544 33445555443 22344444333 33456689999999999887 44443
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.23 E-value=5.4e-10 Score=118.42 Aligned_cols=166 Identities=13% Similarity=0.046 Sum_probs=149.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105 151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR 230 (577)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 230 (577)
+..+++.+...|.+.|++++|++.|++.++.. +-+..+|+.+..+|.+.|++++|.+.|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 57789999999999999999999999999875 4468899999999999999999999999998774 456889999999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH
Q 008105 231 TMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDD 310 (577)
Q Consensus 231 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 310 (577)
+|.+.|++++|++.|++.++.. +-+...|+.+...+.+.|++++|.+.|++..+.. +-+...|..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999998864 5578899999999999999999999999999874 3357889999999999999999
Q ss_pred HHHHHHHHhh
Q 008105 311 AVLVINNLLS 320 (577)
Q Consensus 311 A~~~~~~m~~ 320 (577)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887764
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=2.3e-09 Score=97.44 Aligned_cols=206 Identities=12% Similarity=-0.029 Sum_probs=159.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008105 150 PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTIL 229 (577)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 229 (577)
.|+..+......+.+.|++++|.+.|++.++...+++...+..+...+...|++++|.+.|++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35678888999999999999999999999998754788888889999999999999999999999874 44677899999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HhhHHHHH
Q 008105 230 RTMFDNGKFKQAIGFWKDQLRKGCPPYL-------ITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPD---IVTYNSLV 299 (577)
Q Consensus 230 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li 299 (577)
..+...|++++|++.+++.++.. +.+. ..|..+...+...|++++|.+.|++..+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998863 4455 45778888899999999999999999876 444 46777777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105 300 NFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNIL 368 (577)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 368 (577)
..|...| ...++++...+ ..+...+.... ....+.+++|...++...+... .+..+...+
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP-NRTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence 7776544 34455555543 22344444433 2345678999999999988652 244444433
No 85
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.17 E-value=1.6e-07 Score=95.30 Aligned_cols=379 Identities=7% Similarity=-0.055 Sum_probs=199.9
Q ss_pred cC-ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHH
Q 008105 130 RG-KLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQ-IRSAI 207 (577)
Q Consensus 130 ~g-~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~ 207 (577)
.| +++.|+.+|+.++.. -|. |+++.+.++|++.+.. .|+...|...+....+.+. .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 366777777776654 122 6677777777777764 4577777777766665552 34556
Q ss_pred HHHHHHhhC-CC-CCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 008105 208 ALLDEMSVS-GC-EPDVITYNTILRTMFD----NGKFKQAIGFWKDQLRKGCPPY--LITYTILIEQVCKQCGIARAIEV 279 (577)
Q Consensus 208 ~~~~~~~~~-g~-~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 279 (577)
.+|+..... |. ..+...|...+..+.. +++.+.+.++|++.+.. |+. ...|..... +.+..+...+.++
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~-fE~~~~~~~~~~~ 145 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFEN-FELELNKITGKKI 145 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHH-HHHHHCHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHH-HHHHhccccHHHH
Confidence 666665542 32 2356666666665432 34566777777777753 221 111211111 1111111122222
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc--CC-----HHHHHHHHHH
Q 008105 280 LDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSR--GC-----WDAVDKILDI 352 (577)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--g~-----~~~a~~~~~~ 352 (577)
+.+.. ..+..|..+++.+...-...+...|...+.--... +- .+.+..+|++
T Consensus 146 ~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 146 VGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp HHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence 21111 11222222222222100001222343333322111 00 2345566776
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH-HHHHHhhC-----
Q 008105 353 MNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQ-LLHLLNGS----- 426 (577)
Q Consensus 353 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~----- 426 (577)
+.... +.+...|...+..+.+.|+.+.|..+|++.... +.+...+. .|....+.++... +.+.....
T Consensus 205 al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~ 277 (493)
T 2uy1_A 205 ILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESA 277 (493)
T ss_dssp HHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC-------
T ss_pred HHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchh
Confidence 66543 345666777777777777777888887777766 33332222 1222111112111 11111000
Q ss_pred C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCccH
Q 008105 427 S---CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRA-DQVEEAVDLLKEIGKRGNKMRN 502 (577)
Q Consensus 427 ~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~ 502 (577)
+ .......|...+....+.++.+.|..+|++. +.. ..+...|...+..-... ++.+.|..+|+...+... -+.
T Consensus 278 ~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~ 354 (493)
T 2uy1_A 278 EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DST 354 (493)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCH
T ss_pred hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCH
Confidence 0 0111245666677666778899999999988 321 22444444333222222 368999999998877432 234
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 503 SAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIE 565 (577)
Q Consensus 503 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (577)
..+...++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+.+++++..+
T Consensus 355 ~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 355 LLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456667777788899999999999872 2577788888877888999999888888764
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.16 E-value=5.1e-10 Score=105.13 Aligned_cols=228 Identities=13% Similarity=0.000 Sum_probs=157.9
Q ss_pred HhcCChhhHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 008105 128 CSRGKLTDASKLIDIMARR-------NQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS------GG-VPDTITYNMM 193 (577)
Q Consensus 128 ~~~g~~~~A~~l~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------g~-~~~~~~~~~l 193 (577)
...|++++|+.+|++..+. ..+....++..+...+...|++++|.+.++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777777766652 22335667888999999999999999999998765 21 2345678889
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC------C-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC------C-CCCCHHH
Q 008105 194 VGGLCKRGQIRSAIALLDEMSVS------G-CEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRK------G-CPPYLIT 259 (577)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~~~~~------g-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~ 259 (577)
...|...|++++|.+.|++.... . .+....++..+...+...|++++|.+.+++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988754 1 1234677888999999999999999999998765 1 1223567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCCH-hhHHHHHHHHHhcCCHH------HHHHHHHHHhhCCCCC
Q 008105 260 YTILIEQVCKQCGIARAIEVLDDMAIE-------GCSPDI-VTYNSLVNFSCKQGKYD------DAVLVINNLLSRGMEP 325 (577)
Q Consensus 260 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~-~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p 325 (577)
+..+...+.+.|++++|.+.++++... ...+.. ..|..+...+...+... .+...++..... ...
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 888899999999999999999988763 112222 33333333333333322 222222221111 112
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 008105 326 NSITYNTLLHSLGSRGCWDAVDKILDIMNEA 356 (577)
Q Consensus 326 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 356 (577)
...++..+...|...|++++|...+++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2447788889999999999999999988753
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=4.6e-10 Score=105.40 Aligned_cols=228 Identities=15% Similarity=0.026 Sum_probs=159.6
Q ss_pred HccCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHH
Q 008105 338 GSRGCWDAVDKILDIMNEA-------SHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSK------N-CQPDIVTYNTV 403 (577)
Q Consensus 338 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~l 403 (577)
...|++++|...+++..+. ..+....++..+...|...|++++|+..++++.+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777666542 22345677889999999999999999999998764 1 12345678889
Q ss_pred HHHHHhcCChhHHHHHHHHHhhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHH
Q 008105 404 LGALCKEGMLNEALQLLHLLNGS------S-CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN------GISP-DDIT 469 (577)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~~~~~------~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~ 469 (577)
...+...|++++|...+++.... . .+....++..+...|...|++++|...+++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999987754 1 1334567888999999999999999999999764 1123 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCc-cHHHHHHHHHHHHhcCChHHHHH------HHHHHHHCCCCC
Q 008105 470 HRTLIWGFCRADQVEEAVDLLKEIGKR-------GNKM-RNSAYRLVIHGLCKSKKVDMAIQ------VLELMISSRYKP 535 (577)
Q Consensus 470 ~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~-~~~~~~~li~~~~~~g~~~~A~~------~~~~m~~~~~~p 535 (577)
+..+...|...|++++|.+++++..+. ...+ ....|..+.......+....+.. .++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998753 1122 22334444444443333333222 2222110 1112
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105 536 DDTVFSTIVKKVADDGMTEEAYKLWQKLIEW 566 (577)
Q Consensus 536 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (577)
...++..+...+...|++++|.+++++.++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2456788999999999999999999998763
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.12 E-value=3.4e-08 Score=91.85 Aligned_cols=244 Identities=11% Similarity=0.040 Sum_probs=122.7
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105 124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI 203 (577)
Q Consensus 124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 203 (577)
|+...-.|.+..++.-. .+.........-..+.+++...|+++.. ....|....+..+.. |...+
T Consensus 20 ikn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT--
T ss_pred HHHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc--
Confidence 45555667777776632 2221122222333345677777766531 111233323333332 22211
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008105 204 RSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGC-PPYLITYTILIEQVCKQCGIARAIEVLDD 282 (577)
Q Consensus 204 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 282 (577)
|...|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 556666655544 34555555666666666777777776666654432 12445555666666666666666666666
Q ss_pred HHHcCCCC-----CHhhHHHHHHH--HHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 008105 283 MAIEGCSP-----DIVTYNSLVNF--SCKQG--KYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIM 353 (577)
Q Consensus 283 ~~~~~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 353 (577)
|.+. .| +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|++.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6554 33 13333334433 22222 666666666666544 333223333344556666666666666654
Q ss_pred HhCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008105 354 NEAS---------HSPTVFTYNILINGLCKYGLVDRAINSFNQMVSK 391 (577)
Q Consensus 354 ~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 391 (577)
.+.. -+.++.+...+|......|+ +|.++++++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 4320 02344444344444444454 555666666554
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.09 E-value=1.2e-07 Score=88.30 Aligned_cols=144 Identities=10% Similarity=-0.024 Sum_probs=67.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105 241 AIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGC-SPDIVTYNSLVNFSCKQGKYDDAVLVINNLL 319 (577)
Q Consensus 241 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 319 (577)
|+..|++....+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555544433 33444444555555555666666666655544331 1133444455555555555555555555555
Q ss_pred hCCCCC-----CHHHHHHHHHHH--Hc--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008105 320 SRGMEP-----NSITYNTLLHSL--GS--RGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMV 389 (577)
Q Consensus 320 ~~g~~p-----~~~~~~~ll~~~--~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 389 (577)
+. .| +..+...+..++ .. .++..+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 33 133333333331 11 225555555555554432 222222233334555555555555555433
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=1e-08 Score=83.87 Aligned_cols=129 Identities=11% Similarity=0.150 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008105 119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLC 198 (577)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 198 (577)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566667777777777777777766653 2355566666666666677777777776666554 334555666666666
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 008105 199 KRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR 250 (577)
Q Consensus 199 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 250 (577)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666665543 33455556666666666666666666666554
No 91
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.05 E-value=4.3e-07 Score=92.20 Aligned_cols=97 Identities=7% Similarity=-0.002 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhC-CC-CCCHHHHHHH
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDR-IEKASKVLQIMVMS-GG-VPDTITYNMM 193 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~-g~-~~~~~~~~~l 193 (577)
..+|...+..+-. |+++.+..+|++.+.. .|+...|...+....+.+. .+....+|+..+.. |. ..+...|...
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 4567777777766 8999999999999985 5799999999988887764 45677888887764 43 3467888888
Q ss_pred HHHHH----hcCChHHHHHHHHHHhhC
Q 008105 194 VGGLC----KRGQIRSAIALLDEMSVS 216 (577)
Q Consensus 194 i~~~~----~~g~~~~A~~~~~~~~~~ 216 (577)
+..+. ..|+.+.+.++|++....
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 87654 346788999999999874
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=1.7e-08 Score=82.60 Aligned_cols=132 Identities=15% Similarity=0.182 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 008105 434 TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLC 513 (577)
Q Consensus 434 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 513 (577)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|.++++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566677777778888888877776643 2356667777777777888888888888777654 234566777777888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105 514 KSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV 568 (577)
Q Consensus 514 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (577)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.++
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 8888888888888877632 33567777788888888888888888888877554
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.04 E-value=5.2e-09 Score=99.07 Aligned_cols=207 Identities=14% Similarity=-0.030 Sum_probs=130.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHH
Q 008105 342 CWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSK----NCQPD-IVTYNTVLGALCKEGMLNEA 416 (577)
Q Consensus 342 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A 416 (577)
++++|...+... ...|...|++++|...|.+..+. +-+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 33566677777777777766543 21111 45677777777777788777
Q ss_pred HHHHHHHhhCCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHH
Q 008105 417 LQLLHLLNGSSC---SP--CLITYNTLIDGLAKK-GCMEKAMVLYGQMMENGI-SPD----DITHRTLIWGFCRADQVEE 485 (577)
Q Consensus 417 ~~~~~~~~~~~~---~p--~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~ 485 (577)
...+++..+... .+ -..+++.+...|... |++++|...|++..+... ..+ ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 777766544210 11 134677777888885 888888888888765210 001 3457777888888888888
Q ss_pred HHHHHHHHhhCCCCccH------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--hcC
Q 008105 486 AVDLLKEIGKRGNKMRN------SAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDD------TVFSTIVKKVA--DDG 551 (577)
Q Consensus 486 A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~l~~~~~--~~g 551 (577)
|.+.|++..+....... ..|..+..++...|++++|...+++.++ +.|+. ..+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 88888888774332221 1456677778888888888888888774 33432 12344555554 456
Q ss_pred CHHHHHHHHHHHHH
Q 008105 552 MTEEAYKLWQKLIE 565 (577)
Q Consensus 552 ~~~~A~~~~~~~~~ 565 (577)
++++|.+.++++.+
T Consensus 255 ~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 255 QLSEHCKEFDNFMR 268 (292)
T ss_dssp THHHHHHHHTTSSC
T ss_pred HHHHHHHHhccCCc
Confidence 67777777766554
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=1.5e-08 Score=95.83 Aligned_cols=193 Identities=9% Similarity=-0.028 Sum_probs=111.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHH
Q 008105 161 GLIRIDRIEKASKVLQIMVMS----GGVPD-TITYNMMVGGLCKRGQIRSAIALLDEMSVS----GCEP-DVITYNTILR 230 (577)
Q Consensus 161 ~~~~~g~~~~A~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~li~ 230 (577)
.|...|++++|.+.|++..+. |-+++ ..+|+.+..+|.+.|++++|...|++..+. |-.. -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666555442 21111 345666666666666666666666665432 1000 1345666777
Q ss_pred HHHhC-CChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------hhHHHH
Q 008105 231 TMFDN-GKFKQAIGFWKDQLRKGCP-PY----LITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDI------VTYNSL 298 (577)
Q Consensus 231 ~~~~~-~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l 298 (577)
.|... |++++|+..|++.++.... .+ ..++..+...+.+.|++++|...|++.......... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 77775 7777777777776653110 01 345667777777788888888888777765322211 145666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHH--ccCCHHHHHHHHHHHHh
Q 008105 299 VNFSCKQGKYDDAVLVINNLLSRGMEPNS------ITYNTLLHSLG--SRGCWDAVDKILDIMNE 355 (577)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 355 (577)
..++...|++++|...+++..+. .|+. ..+..++..+. ..+++++|...|+.+..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 67777788888888888777654 2221 12344455554 34567777777766544
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.99 E-value=2e-08 Score=93.30 Aligned_cols=101 Identities=12% Similarity=0.044 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHH
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPD---FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGV-P-DTIT 189 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~-~~~~ 189 (577)
.++..+-.+...+.+.|++++|+..|+++++..+. + ..++..+..++.+.|++++|+..|+..++..+. | ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45677888889999999999999999999887432 3 567888889999999999999999999886431 2 2456
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHhhC
Q 008105 190 YNMMVGGLCK--------RGQIRSAIALLDEMSVS 216 (577)
Q Consensus 190 ~~~li~~~~~--------~g~~~~A~~~~~~~~~~ 216 (577)
+..+..++.. .|++++|...|+++.+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 6777788888 89999999999988865
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=2.9e-08 Score=88.66 Aligned_cols=125 Identities=10% Similarity=0.014 Sum_probs=60.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008105 193 MVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCG 272 (577)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 272 (577)
+...|.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.|++.++.. |.+..++..+...|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 5555555566666666665555443 3345555555555555666666666666555542 3345555555555443332
Q ss_pred --HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 273 --IARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR 321 (577)
Q Consensus 273 --~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (577)
.+.+...++.... ..|....+.....++...|++++|...|++..+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2233333333321 1122222333334444555666666666665544
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=2.3e-08 Score=89.35 Aligned_cols=176 Identities=9% Similarity=-0.037 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHH----------------HHHHHHhcCCHHHHHHHHHHHHh
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCIN----------------LIRGLIRIDRIEKASKVLQIMVM 180 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~~~~ 180 (577)
+..+-.....+.+.|++++|+..|++.++..+ .+...|.. +...+.+.|++++|+..|++.++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445566788899999999999999998742 25566666 88999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCHH
Q 008105 181 SGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGK--FKQAIGFWKDQLRKGCPPYLI 258 (577)
Q Consensus 181 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~ 258 (577)
.. +.+...|..+...|...|++++|...|++..+.. +.+..+|..+...|...|+ .+.+...++.... ..|...
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 86 4578899999999999999999999999998875 5578889989888866554 4455566655532 223333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 008105 259 TYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLV 299 (577)
Q Consensus 259 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 299 (577)
.+..+..++...|++++|...|++..+. .|+......+.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 4444556677789999999999999876 57765444443
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.98 E-value=7.9e-08 Score=86.06 Aligned_cols=177 Identities=14% Similarity=0.016 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChHHHHHH
Q 008105 134 TDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRG----QIRSAIAL 209 (577)
Q Consensus 134 ~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~ 209 (577)
.+|++.|++..+.| +..++..+...|...+++++|.++|++..+.| ++..+..|...|.. + ++++|.+.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35667777777654 66777777777777788888888888777765 55666667776666 5 77777777
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 008105 210 LDEMSVSGCEPDVITYNTILRTMFD----NGKFKQAIGFWKDQLRKGCP-PYLITYTILIEQVCK----QCGIARAIEVL 280 (577)
Q Consensus 210 ~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~ 280 (577)
|++..+.| +...+..|...|.. .+++++|++.|++..+.+.. .+..++..|...|.. .++.++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 77776643 56666677777766 67777777777777665411 115666666666666 66677777777
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhc-C-----CHHHHHHHHHHHhhCC
Q 008105 281 DDMAIEGCSPDIVTYNSLVNFSCKQ-G-----KYDDAVLVINNLLSRG 322 (577)
Q Consensus 281 ~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 322 (577)
++.... ..+...+..|...|... | +.++|..+|++..+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777665 12344555566665543 2 6777777777666654
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.96 E-value=1.1e-07 Score=85.17 Aligned_cols=140 Identities=12% Similarity=-0.019 Sum_probs=63.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHH
Q 008105 346 VDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEG----MLNEALQLLH 421 (577)
Q Consensus 346 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 421 (577)
|.+.|+...+.| ++..+..+...|...+++++|+..|++..+.| ++..+..+...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444432 44444555555555555555555555555443 34444444444444 3 4555555555
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 008105 422 LLNGSSCSPCLITYNTLIDGLAK----KGCMEKAMVLYGQMMENGIS-PDDITHRTLIWGFCR----ADQVEEAVDLLKE 492 (577)
Q Consensus 422 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 492 (577)
...+.+ +...+..|...|.. .+++++|..+|++..+.|.. .+...+..|...|.. .+++++|.++|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 444433 33344444444443 44455555555544443210 013344444444444 4444444444444
Q ss_pred Hhh
Q 008105 493 IGK 495 (577)
Q Consensus 493 m~~ 495 (577)
..+
T Consensus 155 A~~ 157 (212)
T 3rjv_A 155 SSS 157 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 100
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=4.8e-08 Score=90.72 Aligned_cols=189 Identities=11% Similarity=0.020 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCCHHH
Q 008105 360 PTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPD---IVTYNTVLGALCKEGMLNEALQLLHLLNGSSC--SPCLIT 434 (577)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~ 434 (577)
.+...+-.+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|...|+...+... +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 455666677777778888888888888887763 223 56677777778888888888888887776531 112345
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHH
Q 008105 435 YNTLIDGLAK--------KGCMEKAMVLYGQMMENGISPDD-ITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAY 505 (577)
Q Consensus 435 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 505 (577)
+..+..++.. .|++++|...|+++++.. |+. .....+ ..+...... ....+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH----HHHHH
Confidence 6666667777 777888888888777642 331 122111 000000000 00112
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCC
Q 008105 506 RLVIHGLCKSKKVDMAIQVLELMISSRY-KP-DDTVFSTIVKKVADD----------GMTEEAYKLWQKLIEWKVF 569 (577)
Q Consensus 506 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~ 569 (577)
..+...|.+.|++++|+..|+++++... .| ....+..+..++... |++++|...++++++..|.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 3455556666666666666666654211 11 134455555555544 6666666666666665443
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.93 E-value=1.2e-06 Score=82.37 Aligned_cols=227 Identities=8% Similarity=0.037 Sum_probs=142.2
Q ss_pred HHHHHhcCCh-hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---
Q 008105 124 LQNFCSRGKL-TDASKLIDIMARRNQIPDFHFCINLIRGLIRID--RIEKASKVLQIMVMSGGVPDTITYNMMVGGL--- 197 (577)
Q Consensus 124 i~~~~~~g~~-~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~--- 197 (577)
+.+..+.|.+ ++|+.+++.++..++. +..+|+.-...+...+ +++++++.++.++..+ +.+..+|+.--..+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHH
Confidence 3344445544 6899999999987533 6777888888888888 8999999999988876 34556666555544
Q ss_pred -Hhc---CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008105 198 -CKR---GQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFK--QAIGFWKDQLRKGCPPYLITYTILIEQVCKQC 271 (577)
Q Consensus 198 -~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 271 (577)
... +++++++++++++.+.. +.+-.+|+.-.-.+.+.+.++ ++++.++++++.. +-|...|+.....+.+.+
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSG
T ss_pred HHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 444 67888888888887664 567777777777777777777 7778777777764 456666666555555555
Q ss_pred C------HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHhhCC--CCCCHHHHHHHHHHHHccCC
Q 008105 272 G------IARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDD-AVLVINNLLSRG--MEPNSITYNTLLHSLGSRGC 342 (577)
Q Consensus 272 ~------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~ 342 (577)
. ++++++.++++.... +-|...|+.+-..+.+.|+... +..+..++.+.+ -..+...+..+..+|.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 4 566666666665553 3355566666555555555322 333444333221 01233444455555555555
Q ss_pred HHHHHHHHHHHHh
Q 008105 343 WDAVDKILDIMNE 355 (577)
Q Consensus 343 ~~~a~~~~~~~~~ 355 (577)
.++|.++++.+.+
T Consensus 274 ~~~A~~~~~~l~~ 286 (306)
T 3dra_A 274 YNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555443
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.92 E-value=1.6e-08 Score=107.56 Aligned_cols=172 Identities=13% Similarity=0.002 Sum_probs=113.9
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105 163 IRIDRIEKASKVLQIMV--------MSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD 234 (577)
Q Consensus 163 ~~~g~~~~A~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 234 (577)
...|++++|++.+++.. +.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56677777777777776 332 3455667777777777777777777777776553 3456677777777777
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 008105 235 NGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLV 314 (577)
Q Consensus 235 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 314 (577)
.|++++|++.|++.++.. +.+...+..+...+.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777653 4456667777777777777777 77777777653 23556677777777777777777777
Q ss_pred HHHHhhCCCCCC-HHHHHHHHHHHHccC
Q 008105 315 INNLLSRGMEPN-SITYNTLLHSLGSRG 341 (577)
Q Consensus 315 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g 341 (577)
|++..+. .|+ ...+..+..++...+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccC
Confidence 7777655 343 345555555554433
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.89 E-value=7.7e-09 Score=86.97 Aligned_cols=144 Identities=6% Similarity=-0.114 Sum_probs=80.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105 124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI 203 (577)
Q Consensus 124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 203 (577)
...+...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 344555666677777666665432 1234445556666666677777777666666654 33566666666666666666
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008105 204 RSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGF-WKDQLRKGCPPYLITYTILIEQVCKQC 271 (577)
Q Consensus 204 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 271 (577)
++|...|++..+.. +-+..+|..+...|.+.|++++|.+. +++.++.. |-+..+|......+...|
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 66666666666543 33455666666666666666554443 35554432 334455554444444433
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=3.1e-08 Score=85.76 Aligned_cols=161 Identities=9% Similarity=0.027 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 008105 120 NNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG-LC 198 (577)
Q Consensus 120 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~~ 198 (577)
+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...++...+..+ +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 4455667777777777777777766653 23566677777777777777777777777665532 43333222211 11
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 008105 199 KRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPP-YLITYTILIEQVCKQCGIARAI 277 (577)
Q Consensus 199 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 277 (577)
..+...+|.+.+++..+.. +.+...+..+...+...|++++|...|+++++....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222334556666655442 2345666666666666666666666666665543211 2345555666666666666666
Q ss_pred HHHHHHH
Q 008105 278 EVLDDMA 284 (577)
Q Consensus 278 ~~~~~~~ 284 (577)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.88 E-value=1.8e-06 Score=81.07 Aligned_cols=218 Identities=9% Similarity=0.038 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----HhC---CCh
Q 008105 168 IEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRG--QIRSAIALLDEMSVSGCEPDVITYNTILRTM----FDN---GKF 238 (577)
Q Consensus 168 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~----~~~---~~~ 238 (577)
.++|+++++.++..+ +-+...|+.--..+...| +++++++.++.+.... +.+..+|+.--..+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 367888888888876 446667887777777777 8888998888888764 45666666655444 444 677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC------HHH
Q 008105 239 KQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIA--RAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGK------YDD 310 (577)
Q Consensus 239 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~ 310 (577)
++++++++++++.. +.|..+|+.-...+.+.|.++ ++++.++++.+.. +.|...|+.-...+.+.+. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 88888888887763 557777777766677777776 7777777777764 2356666665555555554 666
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008105 311 AVLVINNLLSRGMEPNSITYNTLLHSLGSRGCW-DAVDKILDIMNEAS--HSPTVFTYNILINGLCKYGLVDRAINSFNQ 387 (577)
Q Consensus 311 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (577)
+++.++++....+. |...|+.+-..+.+.|+. +.+..+...+.+.+ .+.+...+..+...|.+.|+.++|+++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 66666666655322 555666655555555553 22334444443321 123455566666666666666666666666
Q ss_pred HHH
Q 008105 388 MVS 390 (577)
Q Consensus 388 m~~ 390 (577)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=9.3e-08 Score=90.08 Aligned_cols=167 Identities=13% Similarity=0.040 Sum_probs=122.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008105 149 IPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTI 228 (577)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 228 (577)
+.+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...++++... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3455666777778888888888888888888775 446777888888888888888888888887765 3554433332
Q ss_pred H-HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcC
Q 008105 229 L-RTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSP-DIVTYNSLVNFSCKQG 306 (577)
Q Consensus 229 i-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 306 (577)
. ..+...++.++|++.+++..... |.+...+..+...+...|++++|.+.|.++.+..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2 33556677777888888877663 5677788888888888888888888888887763221 2556777888888888
Q ss_pred CHHHHHHHHHHHh
Q 008105 307 KYDDAVLVINNLL 319 (577)
Q Consensus 307 ~~~~A~~~~~~m~ 319 (577)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888877776654
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.88 E-value=4.5e-08 Score=104.10 Aligned_cols=173 Identities=12% Similarity=-0.048 Sum_probs=92.0
Q ss_pred HccCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008105 338 GSRGCWDAVDKILDIMN--------EASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCK 409 (577)
Q Consensus 338 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 409 (577)
...|++++|.+.+++.. +.. +.+...+..+...+.+.|++++|++.|+++.+.+ +.+...|..+..++.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44556666666666555 221 2344455555556666666666666666655543 3345555555556666
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105 410 EGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDL 489 (577)
Q Consensus 410 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 489 (577)
.|++++|...|++..+.. +.+...|..+..++.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666555543 3344555556666666666666 66666655532 22345555566666666666666666
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHhcC
Q 008105 490 LKEIGKRGNKMRNSAYRLVIHGLCKSK 516 (577)
Q Consensus 490 ~~~m~~~~~~~~~~~~~~li~~~~~~g 516 (577)
|++..+.+.. +...+..+..++...+
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC---
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccC
Confidence 6655543211 2334444444444433
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.88 E-value=2.6e-07 Score=83.50 Aligned_cols=185 Identities=11% Similarity=0.032 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIP--DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDT--ITYN 191 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~ 191 (577)
++..+..+...+.+.|++++|+..|+++++..+.. ....+..+..++.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34566777888999999999999999999864321 1357788889999999999999999999887533211 2344
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 008105 192 MMVGGLCK------------------RGQIRSAIALLDEMSVSGCEPD-VITYNTILRTMFDNGKFKQAIGFWKDQLRKG 252 (577)
Q Consensus 192 ~li~~~~~------------------~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 252 (577)
.+..++.+ .|++++|...|+++.+.. |+ ...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHH----
Confidence 44444443 345666666666665442 22 1111111100 0000000
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 008105 253 CPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDI----VTYNSLVNFSCKQGKYDDAVLVINNLLSRG 322 (577)
Q Consensus 253 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 322 (577)
......+...+.+.|++++|...|+++.+.. |+. ..+..+..++.+.|+.++|.+.++.+...+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0111345677889999999999999998763 332 467788899999999999999999888774
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=8e-08 Score=100.28 Aligned_cols=154 Identities=10% Similarity=-0.022 Sum_probs=104.8
Q ss_pred cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008105 130 RGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIAL 209 (577)
Q Consensus 130 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 209 (577)
.|++++|.+.|++..+.. +.+...+..+...+.+.|++++|.+.+++..+.. +.+...|..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 367788888888877653 2356777788888888888888888888888765 34577788888888888888888888
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHc
Q 008105 210 LDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQ---CGIARAIEVLDDMAIE 286 (577)
Q Consensus 210 ~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 286 (577)
|++..+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88877664 4467778888888888888888888888877763 45667777788888888 8888888888888776
Q ss_pred C
Q 008105 287 G 287 (577)
Q Consensus 287 ~ 287 (577)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.85 E-value=2.7e-07 Score=83.39 Aligned_cols=186 Identities=12% Similarity=0.023 Sum_probs=125.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HH
Q 008105 151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVP--DTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDV----IT 224 (577)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~ 224 (577)
+...+..+...+.+.|++++|+..|+++++..+.. ....+..+..+|.+.|++++|.+.|+++.+.. |+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 34456667778889999999999999998864321 13567778899999999999999999988653 321 24
Q ss_pred HHHHHHHHHh------------------CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008105 225 YNTILRTMFD------------------NGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIE 286 (577)
Q Consensus 225 ~~~li~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 286 (577)
+..+..++.. .|++++|+..|+++++.. |-+...+....... .+...+.
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~-- 147 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLA-- 147 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHH--
Confidence 4444444443 466777777777776542 22222222111100 0000110
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 008105 287 GCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN--SITYNTLLHSLGSRGCWDAVDKILDIMNEAS 357 (577)
Q Consensus 287 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 357 (577)
.....+...|.+.|++++|+..|+++.+...... ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123466789999999999999999998732211 2467888999999999999999999998875
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.84 E-value=8.5e-08 Score=100.08 Aligned_cols=153 Identities=11% Similarity=-0.052 Sum_probs=114.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105 375 YGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVL 454 (577)
Q Consensus 375 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 454 (577)
.|++++|++.|++..+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 4567888899999999999999999999988875 55678889999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc---CChHHHHHHHHHHHHC
Q 008105 455 YGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKS---KKVDMAIQVLELMISS 531 (577)
Q Consensus 455 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 531 (577)
+++..+.. +.+...+..+..+|...|++++|.+.+++..+... .+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998753 34577888999999999999999999999887643 3567788888899999 9999999999998864
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.84 E-value=8.6e-08 Score=90.33 Aligned_cols=166 Identities=15% Similarity=0.093 Sum_probs=137.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNM-MV 194 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li 194 (577)
+...+..+...+.+.|++++|...|+++++..+ .+...+..+...+.+.|++++|...++++.... |+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 456677888999999999999999999998753 378889999999999999999999999998764 45443333 33
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCH
Q 008105 195 GGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCP-PYLITYTILIEQVCKQCGI 273 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 273 (577)
..+.+.++.++|.+.+++..+.. +.+...+..+...+...|++++|++.|.++++.... .+...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 34667888899999999988764 567899999999999999999999999999987422 1267899999999999999
Q ss_pred HHHHHHHHHHHH
Q 008105 274 ARAIEVLDDMAI 285 (577)
Q Consensus 274 ~~A~~~~~~~~~ 285 (577)
++|...+++...
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999998887653
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=5.3e-08 Score=84.33 Aligned_cols=161 Identities=13% Similarity=0.050 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HH
Q 008105 155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRT-MF 233 (577)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~~ 233 (577)
+......+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4455566677777777777777766543 3356667777777777777777777777765542 343332222111 11
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHH
Q 008105 234 DNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSP-DIVTYNSLVNFSCKQGKYDDAV 312 (577)
Q Consensus 234 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 312 (577)
..+...+|+..+++.++.. |.+...+..+...+...|++++|.+.|+++.+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2122233555555555442 3345556666666666666666666666665543211 2335555566666666666666
Q ss_pred HHHHHHh
Q 008105 313 LVINNLL 319 (577)
Q Consensus 313 ~~~~~m~ 319 (577)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.82 E-value=2.3e-08 Score=84.03 Aligned_cols=142 Identities=11% Similarity=-0.054 Sum_probs=81.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHH
Q 008105 161 GLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQ 240 (577)
Q Consensus 161 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 240 (577)
.+...|++++|++.++...... +.+...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 3445566667776666665432 1123344556666777777777777777666553 3456666666667777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008105 241 AIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEV-LDDMAIEGCSPDIVTYNSLVNFSCKQG 306 (577)
Q Consensus 241 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g 306 (577)
|+..|++.++.. |-+..++..+...+.+.|++++|.+. +++..+.. +-+..+|......+...|
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 777776666543 34556666666666666666554443 35555442 223445554444444444
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.79 E-value=1.7e-07 Score=89.25 Aligned_cols=124 Identities=9% Similarity=-0.036 Sum_probs=54.4
Q ss_pred HHHHccCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHH
Q 008105 335 HSLGSRGCWDAVDKILDIMNEA----SHS-PTVFTYNILINGLCKYGLVDRAINSFNQMVSKNC---QPD--IVTYNTVL 404 (577)
Q Consensus 335 ~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~--~~~~~~li 404 (577)
..|...|++++|...+.+..+. +.+ .-..+|+.+...|.+.|++++|+..|++..+... .+. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666555432 100 0123455555555556666666666655443200 010 12334444
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105 405 GALCKEGMLNEALQLLHLLNGSSC---SP--CLITYNTLIDGLAKKGCMEKAMVLYGQMM 459 (577)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~~~~~~---~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 459 (577)
..|.. |++++|...+++...... .+ ...++..+...|.+.|++++|...|++..
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444 555555555444332110 00 02234444444444444444444444443
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=3.4e-07 Score=87.15 Aligned_cols=199 Identities=11% Similarity=0.041 Sum_probs=104.3
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008105 129 SRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIR-IDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAI 207 (577)
Q Consensus 129 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 207 (577)
..|++++|.+++++..+.... . +.+ .++++.|...|... ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 356778888888877654211 1 011 34555555555443 23455556666666
Q ss_pred HHHHHHhhC----CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 008105 208 ALLDEMSVS----GCEP-DVITYNTILRTMFDNGKFKQAIGFWKDQLRK----GCPP-YLITYTILIEQVCKQCGIARAI 277 (577)
Q Consensus 208 ~~~~~~~~~----g~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~ 277 (577)
+.|.+..+. |-.+ -..+|+.+...|...|++++|+..|++.++. |-+. -..++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 655554322 1000 1334555556666666666666666554432 1000 12345555555655 6666666
Q ss_pred HHHHHHHHcCCC---C--CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCC-HHHHHHHHHHHHccCCHHHHH
Q 008105 278 EVLDDMAIEGCS---P--DIVTYNSLVNFSCKQGKYDDAVLVINNLLSR----GMEPN-SITYNTLLHSLGSRGCWDAVD 347 (577)
Q Consensus 278 ~~~~~~~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~ 347 (577)
+.|++....... + ...+++.+...|.+.|++++|+..|++..+. +..+. ..++..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666655442100 0 1245666666677777777777766666542 11111 124455555566667777777
Q ss_pred HHHHHHH
Q 008105 348 KILDIMN 354 (577)
Q Consensus 348 ~~~~~~~ 354 (577)
..|++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7777666
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.73 E-value=6.9e-06 Score=77.44 Aligned_cols=162 Identities=11% Similarity=0.032 Sum_probs=100.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 008105 404 LGALCKEGMLNEALQLLHLLNGSSC-SPCL----ITYNTLIDGLAKKGCMEKAMVLYGQMMENGIS-PD----DITHRTL 473 (577)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~l 473 (577)
+..+...|++++|..++++...... .|+. ..+..+...+...+++++|...|++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666777777777766655321 1221 12233555555666777777777777763211 22 2356777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh----C-CCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHHHHH
Q 008105 474 IWGFCRADQVEEAVDLLKEIGK----R-GNKMR-NSAYRLVIHGLCKSKKVDMAIQVLELMIS----SRYKPD-DTVFST 542 (577)
Q Consensus 474 i~~~~~~g~~~~A~~~~~~m~~----~-~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~ 542 (577)
...|...|++++|.+.++++.+ . +..+. ..++..+...|.+.|++++|.+.+++.++ .+..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777777777777777777663 1 11122 23567777778888888888888777664 222222 566777
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHH
Q 008105 543 IVKKVADDG-MTEEAYKLWQKLIE 565 (577)
Q Consensus 543 l~~~~~~~g-~~~~A~~~~~~~~~ 565 (577)
+..++.+.| .+++|.+.+++.++
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 777888888 45888887777754
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=8.7e-06 Score=76.74 Aligned_cols=208 Identities=13% Similarity=0.008 Sum_probs=136.4
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008105 314 VINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFT---YNILINGLCKYGLVDRAINSFNQMVS 390 (577)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (577)
.+..+......|+..+...+...+.-.- + .+.......+... +...+..+...|++++|...+++..+
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~--~-------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPI--I-------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCT--H-------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCH--H-------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 3444444444667666666665553221 1 1111111122222 23346677888999999999988876
Q ss_pred CCC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 391 KNC-QPDI----VTYNTVLGALCKEGMLNEALQLLHLLNGSSCS-PC----LITYNTLIDGLAKKGCMEKAMVLYGQMME 460 (577)
Q Consensus 391 ~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 460 (577)
... .|+. ..+..+...+...+++++|...++.+...... ++ ..+++.+...|...|++++|...|+++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 421 2221 12334566666778999999999888763222 22 23688889999999999999999999874
Q ss_pred ----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-cHHHHHHHHHHHHhcCC-hHHHHHHHHHH
Q 008105 461 ----N-GISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKR----GNKM-RNSAYRLVIHGLCKSKK-VDMAIQVLELM 528 (577)
Q Consensus 461 ----~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~-~~~A~~~~~~m 528 (577)
. +..+. ..++..+...|.+.|++++|.+.+++..+. +..+ -..+|..+..++.+.|+ +++|.+.+++.
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 1 11222 336788889999999999999999887652 2222 25678888999999995 69999999887
Q ss_pred HH
Q 008105 529 IS 530 (577)
Q Consensus 529 ~~ 530 (577)
..
T Consensus 264 l~ 265 (293)
T 3u3w_A 264 SF 265 (293)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.70 E-value=8.1e-07 Score=79.31 Aligned_cols=129 Identities=11% Similarity=-0.026 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL 197 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 197 (577)
..+..+...+...|++++|...|++.. .|+..++..+...+.+.|++++|.+.|++..+.. +.+...|..+...|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 445677888889999999999998774 4578888889999999999999999999988775 45678888888999
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCC----------------HHHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 008105 198 CKRGQIRSAIALLDEMSVSGCEPD----------------VITYNTILRTMFDNGKFKQAIGFWKDQLRKG 252 (577)
Q Consensus 198 ~~~g~~~~A~~~~~~~~~~g~~~~----------------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 252 (577)
...|++++|.+.|++..+.. +.+ ...+..+..++...|++++|.+.|++..+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999888653 222 3677788888888889999988888887653
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.69 E-value=1.5e-05 Score=75.65 Aligned_cols=184 Identities=10% Similarity=0.049 Sum_probs=133.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105 119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRID-RIEKASKVLQIMVMSGGVPDTITYNMMVGGL 197 (577)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 197 (577)
+++.+-....+.+..++|+++++.++..++. +..+|+.--..+...| .+++++++++.++... +.+..+|+.-...+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 3444444445555567899999999998644 7777888888888888 5999999999999876 45778888877777
Q ss_pred Hhc-C-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008105 198 CKR-G-QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFK--------QAIGFWKDQLRKGCPPYLITYTILIEQV 267 (577)
Q Consensus 198 ~~~-g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 267 (577)
.+. + ++++++++++++.+.. +.|-.+|+.-.-.+.+.+.++ ++++.++++++.. +-|..+|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 776 7 8899999999998765 567788877665555555555 7888888887764 55777777777666
Q ss_pred HHcCC-------HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 008105 268 CKQCG-------IARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGK 307 (577)
Q Consensus 268 ~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 307 (577)
.+.++ ++++++.++++.... +-|...|+-+-..+.+.|+
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 66665 567777777776653 3366667666655555554
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.66 E-value=7.1e-07 Score=81.87 Aligned_cols=125 Identities=8% Similarity=-0.084 Sum_probs=53.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc
Q 008105 403 VLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD--DITHRTLIWGFCRA 480 (577)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~ 480 (577)
+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 3344444555555555555444432 222233333334445555555555554332210 000 12344444445555
Q ss_pred CCHHHHHHHHHHHhhCCCCc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 481 DQVEEAVDLLKEIGKRGNKM--RNSAYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 481 g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
|++++|++.|++.......| ..........++.+.|+.++|...|+++..
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555444322112 122333344444455555555555555543
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.65 E-value=1.1e-06 Score=74.81 Aligned_cols=128 Identities=11% Similarity=0.008 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL 197 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 197 (577)
..+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|.+.+++..+.. +.+...|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 455666667777777777777777766653 2255666666666666677777776666666553 33455666666666
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHH--HHHHHHhCCChHHHHHHHHHH
Q 008105 198 CKRGQIRSAIALLDEMSVSGCEPDVITYNT--ILRTMFDNGKFKQAIGFWKDQ 248 (577)
Q Consensus 198 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~--li~~~~~~~~~~~A~~~~~~~ 248 (577)
...|++++|.+.|++..+.. +.+...+.. ....+...|++++|++.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666666665542 223333322 222244455555555555443
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.64 E-value=2.2e-06 Score=76.45 Aligned_cols=124 Identities=10% Similarity=-0.017 Sum_probs=60.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008105 193 MVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCG 272 (577)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 272 (577)
+...+...|++++|.+.|++.. .|+...|..+...+...|++++|++.|++..+.. +.+...+..+...+...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3334444445555544444442 3344444444455555555555555555444432 3344444445555555555
Q ss_pred HHHHHHHHHHHHHcCCC--------------C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 273 IARAIEVLDDMAIEGCS--------------P-DIVTYNSLVNFSCKQGKYDDAVLVINNLLSR 321 (577)
Q Consensus 273 ~~~A~~~~~~~~~~~~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (577)
+++|.+.|++....... | ....+..+...+.+.|++++|...+++..+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 55555555554443110 0 1144555555666666666666666666554
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=1.1e-06 Score=71.03 Aligned_cols=97 Identities=9% Similarity=0.045 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL 197 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 197 (577)
..+......|.+.|++++|++.|++.++.. +.+..+|..+..++.+.|++++|++.|++.++.. +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 456666777777777777777777777654 2356666667777777777777777777776654 34566666666777
Q ss_pred HhcCChHHHHHHHHHHhhC
Q 008105 198 CKRGQIRSAIALLDEMSVS 216 (577)
Q Consensus 198 ~~~g~~~~A~~~~~~~~~~ 216 (577)
...|++++|.+.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 7777777777777766654
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.61 E-value=3.1e-05 Score=73.52 Aligned_cols=172 Identities=12% Similarity=0.094 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC-C-ChHHHH
Q 008105 166 DRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRG-QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDN-G-KFKQAI 242 (577)
Q Consensus 166 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~-~-~~~~A~ 242 (577)
+..++|+++++.++..+ +-+..+|+.--..+...| .++++++.++.+.... +.+..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 34468999999999886 446777888878888888 5999999999999875 66788888877777665 6 889999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-------
Q 008105 243 GFWKDQLRKGCPPYLITYTILIEQVCKQCGIA--------RAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGK------- 307 (577)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------- 307 (577)
++++++++.. +.|..+|+--...+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+.
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 9999998764 567778876666555555555 7888888888765 3367777777777766665
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCC
Q 008105 308 YDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGC 342 (577)
Q Consensus 308 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 342 (577)
++++++.++++....+ -|...|+.+-..+.+.|.
T Consensus 224 ~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 224 LQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 5677777777766532 255666665555555443
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.60 E-value=1.6e-06 Score=70.10 Aligned_cols=97 Identities=13% Similarity=0.040 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008105 153 HFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTM 232 (577)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 232 (577)
..+......|.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|++.|++..+.. +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345556666777777777777777766654 3456666667777777777777777777666553 44566666666677
Q ss_pred HhCCChHHHHHHHHHHHHC
Q 008105 233 FDNGKFKQAIGFWKDQLRK 251 (577)
Q Consensus 233 ~~~~~~~~A~~~~~~~~~~ 251 (577)
...|++++|++.|++.++.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 7777777777777666654
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.60 E-value=2.4e-06 Score=72.59 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=74.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105 154 FCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMF 233 (577)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 233 (577)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 35555666666777777777777766654 3355666666666666777777777766666543 335556666666666
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHH
Q 008105 234 DNGKFKQAIGFWKDQLRKGCPPYLITYTI--LIEQVCKQCGIARAIEVLDDM 283 (577)
Q Consensus 234 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~ 283 (577)
..|++++|.+.|++..+.. +.+...+.. +...+.+.|++++|.+.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666666542 223333322 222344555666666555544
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=2e-06 Score=68.82 Aligned_cols=111 Identities=9% Similarity=0.055 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG 196 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 196 (577)
...|..+...+...|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4566666677777777777777777766653 2345566666666666666666666666666543 3345556666666
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105 197 LCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR 230 (577)
Q Consensus 197 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 230 (577)
+...|++++|...|+++.+.. +.+...+..+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 119 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 119 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 666666666666666665442 223344443333
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=2.3e-06 Score=68.43 Aligned_cols=98 Identities=12% Similarity=0.179 Sum_probs=58.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008105 152 FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRT 231 (577)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 231 (577)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455556666666666666666666666543 3345556666666666666666666666665543 3345555666666
Q ss_pred HHhCCChHHHHHHHHHHHHC
Q 008105 232 MFDNGKFKQAIGFWKDQLRK 251 (577)
Q Consensus 232 ~~~~~~~~~A~~~~~~~~~~ 251 (577)
+...|++++|.+.++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666665544
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=1.5e-06 Score=70.64 Aligned_cols=120 Identities=12% Similarity=-0.006 Sum_probs=91.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008105 113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNM 192 (577)
Q Consensus 113 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 192 (577)
...+...|..+...+.+.|++++|...|++..+.. +.+..++..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 45567888899999999999999999999988764 3367778888888888888999988888888765 346777888
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 008105 193 MVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDN 235 (577)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 235 (577)
+...+.+.|++++|.+.|++..+.. +.+...+..+...+...
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 8888888888888888888877653 23445555555555443
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=6.3e-07 Score=84.05 Aligned_cols=98 Identities=11% Similarity=-0.034 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG 195 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 195 (577)
+...+..+...+.+.|++++|+..|++.++.. +.+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666677777777777777777766653 2255666666666666777777777776666553 334556666666
Q ss_pred HHHhcCChHHHHHHHHHHhh
Q 008105 196 GLCKRGQIRSAIALLDEMSV 215 (577)
Q Consensus 196 ~~~~~g~~~~A~~~~~~~~~ 215 (577)
+|...|++++|...|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666553
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.56 E-value=1.9e-05 Score=74.40 Aligned_cols=167 Identities=13% Similarity=0.028 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHhhCCC---CCC--
Q 008105 363 FTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDI------VTYNTVLGALCKEGMLNEALQLLHLLNGSSC---SPC-- 431 (577)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p~-- 431 (577)
..+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...+++...... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555677788889999999998887775322 22 2233455566777899999998887765321 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CC-c
Q 008105 432 LITYNTLIDGLAKKGCMEKAMVLYGQMMEN-GISPD-----DITHRTLIWGFCRADQVEEAVDLLKEIGKRG----NK-M 500 (577)
Q Consensus 432 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~-~ 500 (577)
..+++.+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|.+.+++..+.. .. .
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 347888888899999999999999888621 01122 2577888888999999999999998876521 11 1
Q ss_pred cHHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 008105 501 RNSAYRLVIHGLCKSKKVDMA-IQVLELMIS 530 (577)
Q Consensus 501 ~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 530 (577)
-..+|..+...+.+.|++++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 156778888888999999999 777777653
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.56 E-value=1.2e-06 Score=77.30 Aligned_cols=157 Identities=10% Similarity=-0.129 Sum_probs=88.1
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh----CCC-CCCHHHHHHHHHHHHhcCC
Q 008105 373 CKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNG----SSC-SPCLITYNTLIDGLAKKGC 447 (577)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~~~~~li~~~~~~g~ 447 (577)
...|++++|.+.++.+... ......++..+...+...|++++|...+++... .+. +....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3457777777744444321 223455666677777777777777777766544 111 1223456666666777777
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCcc--HHHHHHHHHHHHhcC
Q 008105 448 MEKAMVLYGQMMEN----GISP--DDITHRTLIWGFCRADQVEEAVDLLKEIGKR---GNKMR--NSAYRLVIHGLCKSK 516 (577)
Q Consensus 448 ~~~A~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~--~~~~~~li~~~~~~g 516 (577)
+++|.+.+++..+. +-.| ....+..+...+...|++++|.+.+++..+. ...+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777766542 1111 1234556666666777777777777665431 01111 223455666666777
Q ss_pred ChHHHHHHHHHHHH
Q 008105 517 KVDMAIQVLELMIS 530 (577)
Q Consensus 517 ~~~~A~~~~~~m~~ 530 (577)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777766654
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.55 E-value=2e-06 Score=69.47 Aligned_cols=119 Identities=8% Similarity=-0.031 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG 195 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 195 (577)
+...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|.+.++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45566777777777777777777777777653 2356666666777777777777777777766653 334556666666
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 008105 196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGK 237 (577)
Q Consensus 196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 237 (577)
.+.+.|++++|.+.|++..+.. +.+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 6667777777777776666543 3345555555555555444
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.55 E-value=4.5e-06 Score=78.13 Aligned_cols=194 Identities=11% Similarity=-0.004 Sum_probs=118.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105 361 TVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLID 440 (577)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 440 (577)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++...+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45566777777888888888888888877763 4467777788888888888888888888877764 456677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChH
Q 008105 441 GLAKKGCMEKAMVLYGQMMENGISPDD-ITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVD 519 (577)
Q Consensus 441 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 519 (577)
+|...|++++|...|++..+.+ |+. ..+...+....+ ..++.. +..........+......+.. + ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 8888888888888888876531 211 011111111111 111111 112222223333333333322 2 268888
Q ss_pred HHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhc-CCHHHHHHHHHHHHHc
Q 008105 520 MAIQVLELMISSRYKPDDTVF-STIVKKVADD-GMTEEAYKLWQKLIEW 566 (577)
Q Consensus 520 ~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~-g~~~~A~~~~~~~~~~ 566 (577)
+|.+.+++..+ ..|+.... ..+...+.+. +.+++|.++|.++.+.
T Consensus 153 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88888887774 35554433 3344444444 6678888888877654
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.54 E-value=8.4e-06 Score=76.85 Aligned_cols=126 Identities=10% Similarity=-0.008 Sum_probs=55.6
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCC---CCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCC----HHHHHH
Q 008105 194 VGGLCKRGQIRSAIALLDEMSVSGC---EPD--VITYNTILRTMFDNGKFKQAIGFWKDQLRK--GCPPY----LITYTI 262 (577)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~~~~~g~---~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~----~~~~~~ 262 (577)
...+...|++++|...+++...... .+. ..+|+.+...|...|++++|+..|++..+. ..+.+ ..++..
T Consensus 122 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~n 201 (293)
T 2qfc_A 122 AAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN 201 (293)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHh
Confidence 3334444455555555544432210 111 234444555555555555555555544411 00111 134445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC----CCC-CHhhHHHHHHHHHhcCCHHHH-HHHHHHHh
Q 008105 263 LIEQVCKQCGIARAIEVLDDMAIEG----CSP-DIVTYNSLVNFSCKQGKYDDA-VLVINNLL 319 (577)
Q Consensus 263 l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 319 (577)
+...|.+.|++++|.+.+++..... ... -..+|..+...|.+.|++++| ...+++..
T Consensus 202 lg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5555555555555555555544321 000 134455555556666666655 44454443
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.53 E-value=1.1e-06 Score=73.31 Aligned_cols=94 Identities=11% Similarity=0.005 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105 155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD 234 (577)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 234 (577)
+..+...+.+.|++++|.+.|++.++.. +.+...|..+..+|.+.|++++|.+.|++..+.. +.+...|..+..+|..
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 3334444444444444444444444432 2234444444444444444444444444444332 2233344444444444
Q ss_pred CCChHHHHHHHHHHHH
Q 008105 235 NGKFKQAIGFWKDQLR 250 (577)
Q Consensus 235 ~~~~~~A~~~~~~~~~ 250 (577)
.|++++|++.|++.++
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444443
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.51 E-value=1.4e-06 Score=72.68 Aligned_cols=105 Identities=9% Similarity=0.054 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
.+...+..+...+.+.|++++|+..|++++...+ .+...|..+..+|.+.|++++|++.|++..+.. +.+...|..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 3567888999999999999999999999999853 488899999999999999999999999999886 44678899999
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHH
Q 008105 195 GGLCKRGQIRSAIALLDEMSVSGCEPDVI 223 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 223 (577)
.+|.+.|++++|.+.|++..+. .|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 9999999999999999999876 45554
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.51 E-value=2.6e-06 Score=78.13 Aligned_cols=187 Identities=11% Similarity=-0.043 Sum_probs=118.6
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChhhHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------
Q 008105 129 SRGKLTDASKLIDIMARRNQIPDFHFCINL-------IRGLIRIDRIEKASKVLQIMVMSGGVPD--------------- 186 (577)
Q Consensus 129 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------- 186 (577)
..++...|.+.|.++.+..+. ....|..+ ...+.+.++..++...+..-... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 578888888888888887533 66677766 45565555555555555554441 111
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--H
Q 008105 187 -------TITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPY--L 257 (577)
Q Consensus 187 -------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~--~ 257 (577)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1233445666777888888888887776543 433355556667777888888888776543321 111 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 258 ITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPD--IVTYNSLVNFSCKQGKYDDAVLVINNLLSR 321 (577)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (577)
..+..+..++.+.|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3556666777777888888887777764322132 234555666777777777777777777766
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.51 E-value=1.9e-06 Score=82.99 Aligned_cols=87 Identities=10% Similarity=-0.094 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008105 188 ITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQV 267 (577)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 267 (577)
..|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++.++.. +.+...+..+...+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 445555555555555555555555555443 3345555555555555555555555555555442 33445555555555
Q ss_pred HHcCCHHHH
Q 008105 268 CKQCGIARA 276 (577)
Q Consensus 268 ~~~g~~~~A 276 (577)
.+.|+.++|
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555555
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=1.6e-06 Score=74.90 Aligned_cols=122 Identities=11% Similarity=0.092 Sum_probs=99.0
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh--H
Q 008105 128 CSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG-LCKRGQI--R 204 (577)
Q Consensus 128 ~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~--~ 204 (577)
...|++++|...+++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45788999999999988874 3477888999999999999999999999998875 4467788888888 7788998 9
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 008105 205 SAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKG 252 (577)
Q Consensus 205 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 252 (577)
+|...|++..+.. +.+...+..+...+...|++++|...|++..+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999988764 4567888888899999999999999999988764
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.51 E-value=1.5e-06 Score=76.73 Aligned_cols=132 Identities=8% Similarity=-0.067 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCC--CC
Q 008105 188 ITYNMMVGGLCKRGQIRSAIALLDEMSVS----GCE-PDVITYNTILRTMFDNGKFKQAIGFWKDQLRK----GCP--PY 256 (577)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~--~~ 256 (577)
..+..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|.+.+++..+. +-. ..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 34444444444445555554444444321 101 12234444555555555555555555554332 101 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105 257 LITYTILIEQVCKQCGIARAIEVLDDMAIEG---CSPD--IVTYNSLVNFSCKQGKYDDAVLVINNLL 319 (577)
Q Consensus 257 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 319 (577)
...+..+...+...|++++|.+.+++..... -.+. ..++..+...+...|++++|.+.+++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 2334455555666666666666665554310 0011 1234555566666666666666665544
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=3.8e-06 Score=67.75 Aligned_cols=117 Identities=11% Similarity=0.053 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008105 152 FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRT 231 (577)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 231 (577)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..... +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3344555555556666666666666655543 2345555555555556666666666665555432 2334555555555
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008105 232 MFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQC 271 (577)
Q Consensus 232 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 271 (577)
+...|++++|.+.|++..+.. +.+...+..+...+.+.|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 555555555555555555432 234444444444444443
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=2.7e-06 Score=69.09 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008105 152 FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRT 231 (577)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 231 (577)
...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3344444444555555555555555554432 2234444444444444555555555554444332 2234444444444
Q ss_pred HHhCCChHHHHHHHHHHHH
Q 008105 232 MFDNGKFKQAIGFWKDQLR 250 (577)
Q Consensus 232 ~~~~~~~~~A~~~~~~~~~ 250 (577)
+...|++++|.+.|++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 4444444444444444443
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.49 E-value=1.7e-06 Score=74.63 Aligned_cols=121 Identities=10% Similarity=0.087 Sum_probs=85.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhCCCh--H
Q 008105 163 IRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRT-MFDNGKF--K 239 (577)
Q Consensus 163 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~~~~~~~--~ 239 (577)
...|++++|...++...+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 35677777888888777664 4466777888888888888888888888877653 3466677777777 6677777 8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008105 240 QAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIE 286 (577)
Q Consensus 240 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 286 (577)
+|...+++.++.. +.+...+..+...+...|++++|...|+++...
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888777653 445667777777777888888888888777765
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.45 E-value=9.3e-07 Score=73.84 Aligned_cols=93 Identities=14% Similarity=-0.025 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105 155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD 234 (577)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 234 (577)
+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|.+.|++..... +.+...+..+..+|..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3334444444444444444444444332 2234444444444444444444444444444332 2233344444444444
Q ss_pred CCChHHHHHHHHHHH
Q 008105 235 NGKFKQAIGFWKDQL 249 (577)
Q Consensus 235 ~~~~~~A~~~~~~~~ 249 (577)
.|++++|.+.|++.+
T Consensus 102 ~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 102 XGELAEAESGLFLAQ 116 (148)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444443
No 147
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.44 E-value=0.0002 Score=67.69 Aligned_cols=191 Identities=7% Similarity=-0.022 Sum_probs=123.0
Q ss_pred HHHhcCChh-hHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 126 NFCSRGKLT-DASKLIDIMARRNQIPDFHFCINLIRGLIRIDR----------IEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 126 ~~~~~g~~~-~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
...+.|+++ +|+.+++.++..++. +..+|+.--..+...++ +++++.+++.+.... +.+..+|+.-.
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~ 115 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 115 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 344566666 788888888887533 55666665444443333 577888888887765 45777777777
Q ss_pred HHHHhcCC--hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-
Q 008105 195 GGLCKRGQ--IRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGK-FKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQ- 270 (577)
Q Consensus 195 ~~~~~~g~--~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 270 (577)
..+.+.|+ ++++++.++++.+.. +.|..+|+.-.-.+...|. ++++++.++++++.. +-|..+|+.....+.+.
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHS
T ss_pred HHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhh
Confidence 77777773 778888888887765 5677777777767777777 578888888887764 55777777666555544
Q ss_pred -------------CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-----------CCHHHHHHHHHHHhhC
Q 008105 271 -------------CGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQ-----------GKYDDAVLVINNLLSR 321 (577)
Q Consensus 271 -------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~ 321 (577)
+.++++++.++...... +-|...|+-+-..+.+. +.++++++.++++.+.
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 33566666666666553 33556665444444433 2344555555555544
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.44 E-value=4.9e-06 Score=80.12 Aligned_cols=94 Identities=9% Similarity=-0.091 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 008105 223 ITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFS 302 (577)
Q Consensus 223 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 302 (577)
..|..+..+|.+.|++++|+..+++.++.. +.+...+..+..++...|++++|.+.|+++.... +.+...+..+...+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 455555566666666666666666655542 3455555556666666666666666666655542 22344555555555
Q ss_pred HhcCCHHHH-HHHHHHH
Q 008105 303 CKQGKYDDA-VLVINNL 318 (577)
Q Consensus 303 ~~~g~~~~A-~~~~~~m 318 (577)
.+.|+.++| ...++.|
T Consensus 275 ~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 556665555 2344444
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=1.2e-05 Score=63.46 Aligned_cols=98 Identities=12% Similarity=-0.066 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG 196 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 196 (577)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4556667777777777777777777777653 2356666667777777777777777777776654 3355666666677
Q ss_pred HHhcCChHHHHHHHHHHhhC
Q 008105 197 LCKRGQIRSAIALLDEMSVS 216 (577)
Q Consensus 197 ~~~~g~~~~A~~~~~~~~~~ 216 (577)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 77777777777777766654
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.42 E-value=0.00013 Score=68.98 Aligned_cols=137 Identities=10% Similarity=0.033 Sum_probs=68.4
Q ss_pred HhcCCHH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105 303 CKQGKYD-DAVLVINNLLSRGMEPNSITYNTLLHSLGSRGC----------WDAVDKILDIMNEASHSPTVFTYNILING 371 (577)
Q Consensus 303 ~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 371 (577)
.+.|.+. +|+.+++.+....+. +...|+.--..+...+. ++++..+++.+.... +.+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445443 677777777765321 23344433333322222 345555555555443 2355555555555
Q ss_pred HHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105 372 LCKYGL--VDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGM-LNEALQLLHLLNGSSCSPCLITYNTLIDGLA 443 (577)
Q Consensus 372 ~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 443 (577)
+.+.++ +++++.+++++.+.. +-|..+|+--...+...|. +++++..++.+.+.. +-|...|+.....+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 555552 556666666666553 4455555555555555555 355555555555543 334445544444433
No 151
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.41 E-value=1.8e-06 Score=72.08 Aligned_cols=99 Identities=11% Similarity=-0.082 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105 186 DTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIE 265 (577)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 265 (577)
+...+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|++.|++.+... |.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34456666677777777777777777776654 4466777777777777777777777777776653 445566666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 008105 266 QVCKQCGIARAIEVLDDMAIE 286 (577)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~~~ 286 (577)
.+...|++++|.+.|+.....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776654
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.36 E-value=9.9e-07 Score=77.84 Aligned_cols=96 Identities=8% Similarity=-0.117 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 008105 154 FCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD---------------TITYNMMVGGLCKRGQIRSAIALLDEMSVSGC 218 (577)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 218 (577)
.+..+...+.+.|++++|.+.|++.++...... ...|..+..+|.+.|++++|...+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 344455555555666666666665554321100 1344444444555555555555555444432
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 008105 219 EPDVITYNTILRTMFDNGKFKQAIGFWKDQLR 250 (577)
Q Consensus 219 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 250 (577)
+.+...+..+..+|...|++++|++.|++.++
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 23344444444444455555555555544443
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.35 E-value=9e-06 Score=65.67 Aligned_cols=97 Identities=9% Similarity=0.068 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGV--PD----TITYN 191 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~----~~~~~ 191 (577)
..+..+...+.+.|++++|+..|++.++..+ .+..+|..+..+|.+.|++++|++.+++.++.... ++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4566677777777777777777777776542 35666666777777777777777777766653211 11 12445
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhh
Q 008105 192 MMVGGLCKRGQIRSAIALLDEMSV 215 (577)
Q Consensus 192 ~li~~~~~~g~~~~A~~~~~~~~~ 215 (577)
.+...+...|++++|++.|++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555666666666666665554
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.5e-05 Score=64.19 Aligned_cols=96 Identities=14% Similarity=0.043 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL 197 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 197 (577)
..|..+...+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..+++.++.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 455666666777777777777777766653 2355666666666666777777777776666654 33455666666666
Q ss_pred HhcCChHHHHHHHHHHhh
Q 008105 198 CKRGQIRSAIALLDEMSV 215 (577)
Q Consensus 198 ~~~g~~~~A~~~~~~~~~ 215 (577)
...|++++|.+.|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666666654
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.34 E-value=2.1e-05 Score=61.94 Aligned_cols=98 Identities=10% Similarity=0.036 Sum_probs=62.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008105 152 FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRT 231 (577)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 231 (577)
...+..+...+...|++++|.+.|+...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445556666667777777777777766654 3355666666666667777777777776666543 3345566666666
Q ss_pred HHhCCChHHHHHHHHHHHHC
Q 008105 232 MFDNGKFKQAIGFWKDQLRK 251 (577)
Q Consensus 232 ~~~~~~~~~A~~~~~~~~~~ 251 (577)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666666554
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.4e-05 Score=64.33 Aligned_cols=98 Identities=14% Similarity=0.011 Sum_probs=67.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008105 152 FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRT 231 (577)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 231 (577)
...+..+...+.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3445666666777777777777777777664 3456677777777777777777777777776653 3456667777777
Q ss_pred HHhCCChHHHHHHHHHHHHC
Q 008105 232 MFDNGKFKQAIGFWKDQLRK 251 (577)
Q Consensus 232 ~~~~~~~~~A~~~~~~~~~~ 251 (577)
+...|++++|.+.|++.++.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777766653
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.31 E-value=9.8e-06 Score=71.32 Aligned_cols=132 Identities=8% Similarity=-0.083 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPD---------------FHFCINLIRGLIRIDRIEKASKVLQIMVMS 181 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 181 (577)
...+..+...+.+.|++++|+..|++.++...... ..++..+..++.+.|++++|+..++..++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 35677888999999999999999999998643211 268888999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHH-HHHHHHHH
Q 008105 182 GGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAI-GFWKDQLR 250 (577)
Q Consensus 182 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~-~~~~~~~~ 250 (577)
. +.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++...++.+++. ..|..+..
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5 4578889999999999999999999999988764 446777888877777777666665 44555443
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.29 E-value=1.2e-05 Score=62.75 Aligned_cols=96 Identities=10% Similarity=0.038 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVP--DTITYNMMVG 195 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~ 195 (577)
..+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344445555555555555555555555442 1234444444444555555555555555544432 12 3444444444
Q ss_pred HHHhc-CChHHHHHHHHHHhh
Q 008105 196 GLCKR-GQIRSAIALLDEMSV 215 (577)
Q Consensus 196 ~~~~~-g~~~~A~~~~~~~~~ 215 (577)
.+.+. |++++|.+.+++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 44444 455555544444443
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=3.6e-05 Score=63.59 Aligned_cols=113 Identities=11% Similarity=0.016 Sum_probs=88.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008105 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPD----FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTIT 189 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 189 (577)
..+...+..+...+.+.|++++|.+.|++..+.. |+ ...+..+...+...|++++|++.+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 3567888999999999999999999999998864 44 6777888888889999999999998888764 346777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105 190 YNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR 230 (577)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 230 (577)
+..+..+|...|++++|.+.|++..+.. +.+...+..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 8888888888899999999888887653 334444444333
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.26 E-value=1.3e-05 Score=66.13 Aligned_cols=99 Identities=12% Similarity=0.030 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG 195 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 195 (577)
+...+..+...+.+.|++++|...|++....++ .+...|..+..++.+.|++++|+..|+...+.. +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 344556667777777777777777777776642 366666777777777777777777777777664 335556666677
Q ss_pred HHHhcCChHHHHHHHHHHhhC
Q 008105 196 GLCKRGQIRSAIALLDEMSVS 216 (577)
Q Consensus 196 ~~~~~g~~~~A~~~~~~~~~~ 216 (577)
+|...|++++|.+.|++..+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777766543
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.26 E-value=1.3e-05 Score=62.49 Aligned_cols=100 Identities=7% Similarity=-0.140 Sum_probs=88.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHHHH
Q 008105 151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEP--DVITYNTI 228 (577)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~l 228 (577)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|.+.|++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 56677888899999999999999999998875 4577889999999999999999999999998874 44 68899999
Q ss_pred HHHHHhC-CChHHHHHHHHHHHHCC
Q 008105 229 LRTMFDN-GKFKQAIGFWKDQLRKG 252 (577)
Q Consensus 229 i~~~~~~-~~~~~A~~~~~~~~~~~ 252 (577)
...+... |++++|.+.+++.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 9999999 99999999999998764
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=1.4e-05 Score=65.28 Aligned_cols=100 Identities=11% Similarity=-0.044 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV 194 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 194 (577)
.+...|..+...+.+.|++++|...|++.+... +.+...+..+...+...|++++|...++...+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 456777788888888888888888888877764 3356777777777788888888888888777765 34566777777
Q ss_pred HHHHhcCChHHHHHHHHHHhhC
Q 008105 195 GGLCKRGQIRSAIALLDEMSVS 216 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~ 216 (577)
..|...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777788888887777776643
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.25 E-value=1e-05 Score=65.15 Aligned_cols=108 Identities=10% Similarity=0.100 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGG--VPD----TITYN 191 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~----~~~~~ 191 (577)
..|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+... .++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456667777777777777777777777653 33566666677777777777777777777665431 111 45566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008105 192 MMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTI 228 (577)
Q Consensus 192 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 228 (577)
.+...|.+.|++++|.+.|++..+. .|+...+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 6666666667777777666666654 2444444333
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.24 E-value=8.8e-06 Score=65.73 Aligned_cols=108 Identities=17% Similarity=0.151 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--Ccc----HHHH
Q 008105 432 LITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGN--KMR----NSAY 505 (577)
Q Consensus 432 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~----~~~~ 505 (577)
...+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++..+... .++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3456677778888888888888888887642 23466777788888888888888888887765321 111 2356
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008105 506 RLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFST 542 (577)
Q Consensus 506 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 542 (577)
..+..++...|++++|++.|++.++. .||+.+...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 66677777788888888888777642 466555443
No 165
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.24 E-value=1.6e-05 Score=65.58 Aligned_cols=95 Identities=11% Similarity=-0.044 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105 154 FCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMF 233 (577)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 233 (577)
.+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|...|++..... +.+...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34444555555666666666666655543 3345555555555666666666666666555443 334445555555555
Q ss_pred hCCChHHHHHHHHHHHH
Q 008105 234 DNGKFKQAIGFWKDQLR 250 (577)
Q Consensus 234 ~~~~~~~A~~~~~~~~~ 250 (577)
..|++++|.+.|++.++
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555544
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.23 E-value=1.2e-05 Score=68.27 Aligned_cols=100 Identities=14% Similarity=0.024 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHH
Q 008105 430 PCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVI 509 (577)
Q Consensus 430 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 509 (577)
.+...+..+...+.+.|++++|...|++.++.. +.+...|..+..+|...|++++|...|++..+... .+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 356678888999999999999999999998753 33688899999999999999999999999988653 3577888999
Q ss_pred HHHHhcCChHHHHHHHHHHHHC
Q 008105 510 HGLCKSKKVDMAIQVLELMISS 531 (577)
Q Consensus 510 ~~~~~~g~~~~A~~~~~~m~~~ 531 (577)
.++...|++++|.+.|++.++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999863
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.22 E-value=3.1e-05 Score=63.14 Aligned_cols=98 Identities=10% Similarity=-0.058 Sum_probs=55.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105 151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR 230 (577)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 230 (577)
+...+..+...+...|++++|...|+..++.. +.+...|..+...+...|++++|...+++..+.. +.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 44555555666666666666666666655543 2345555555666666666666666666555443 334555555555
Q ss_pred HHHhCCChHHHHHHHHHHHH
Q 008105 231 TMFDNGKFKQAIGFWKDQLR 250 (577)
Q Consensus 231 ~~~~~~~~~~A~~~~~~~~~ 250 (577)
++...|++++|+..|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555543
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.20 E-value=3.3e-05 Score=65.50 Aligned_cols=98 Identities=8% Similarity=-0.032 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG 195 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 195 (577)
+...+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455556666666666666666666665543 2245555555555555555555555555555543 223445555555
Q ss_pred HHHhcCChHHHHHHHHHHhh
Q 008105 196 GLCKRGQIRSAIALLDEMSV 215 (577)
Q Consensus 196 ~~~~~g~~~~A~~~~~~~~~ 215 (577)
+|.+.|++++|.+.|++..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 55555555555555555443
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.19 E-value=2e-05 Score=63.43 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCC----HHHHH
Q 008105 153 HFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGC--EPD----VITYN 226 (577)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~----~~~~~ 226 (577)
..+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...+++...... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456666777777788888888887777664 34566777777777777888887777777665420 111 55666
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008105 227 TILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTIL 263 (577)
Q Consensus 227 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 263 (577)
.+...+...|++++|.+.|++..+.. |+......+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l 118 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 66677777777777777777766542 344444333
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.19 E-value=1.5e-05 Score=63.72 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008105 471 RTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADD 550 (577)
Q Consensus 471 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 550 (577)
..+...+.+.|++++|...|++..+... .+...|..+..++...|++++|+..+++.++.. +.+...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3344455556666666666666555432 244555556666666666666666666665432 12345555566666666
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 008105 551 GMTEEAYKLWQKLIEWKV 568 (577)
Q Consensus 551 g~~~~A~~~~~~~~~~~~ 568 (577)
|++++|+..+++.++.++
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 666666666666655443
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=0.00013 Score=72.81 Aligned_cols=197 Identities=8% Similarity=-0.065 Sum_probs=106.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC
Q 008105 334 LHSLGSRGCWDAVDKILDIMNEASHSPTV----------------FTYNILINGLCKYGLVDRAINSFNQMVSKN-CQPD 396 (577)
Q Consensus 334 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~ 396 (577)
...+.+.|++++|.+.+..+.+....... ..+..+...|.+.|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34556777888888888777765432111 135566777777777777777777665421 0111
Q ss_pred HH----HHHHHHHHHHhcCChhHHHHHHHHHhh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 008105 397 IV----TYNTVLGALCKEGMLNEALQLLHLLNG----SSCSP-CLITYNTLIDGLAKKGCMEKAMVLYGQMMEN--GI-- 463 (577)
Q Consensus 397 ~~----~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-- 463 (577)
.. +.+.+-..+...|+++.|..++..... .+..+ -..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 112222223344666677666655432 11111 2345556666666777777777766665431 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 464 SP-DDITHRTLIWGFCRADQVEEAVDLLKEIGKR----GNKMR--NSAYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 464 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
.+ ....+..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1335566666666667777777666665431 11111 23344555555666666666666666543
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.18 E-value=1.6e-05 Score=63.59 Aligned_cols=96 Identities=11% Similarity=-0.012 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008105 119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLC 198 (577)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 198 (577)
.+..+...+.+.|++++|+..|++.++..+ .+...|..+..++.+.|++++|+..|++.++.. +.+...+..+...|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 355677788888899999998888888743 377778888888888888888888888888775 346677788888888
Q ss_pred hcCChHHHHHHHHHHhhC
Q 008105 199 KRGQIRSAIALLDEMSVS 216 (577)
Q Consensus 199 ~~g~~~~A~~~~~~~~~~ 216 (577)
+.|++++|...|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888887754
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=7.2e-05 Score=61.73 Aligned_cols=99 Identities=9% Similarity=-0.075 Sum_probs=67.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 008105 150 PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD----TITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITY 225 (577)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 225 (577)
.+...+..+...+.+.|++++|.+.|++..+.. |+ ...|..+...|...|++++|.+.+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 355666677777777888888888888777653 34 5566667777777777777777777766543 3356666
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHC
Q 008105 226 NTILRTMFDNGKFKQAIGFWKDQLRK 251 (577)
Q Consensus 226 ~~li~~~~~~~~~~~A~~~~~~~~~~ 251 (577)
..+..++...|++++|.+.|++.++.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 66667777777777777777766654
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=1.9e-05 Score=66.25 Aligned_cols=134 Identities=12% Similarity=0.038 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-cH
Q 008105 433 ITYNTLIDGLAKKGCMEKAMVLYGQMMENGI-SPD----DITHRTLIWGFCRADQVEEAVDLLKEIGKR----GNKM-RN 502 (577)
Q Consensus 433 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~ 502 (577)
.++..+...+...|++++|...+++..+... .++ ...+..+...+...|++++|.+.+++..+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3455666666677777777777766654210 011 135666777777778888888877776541 1111 13
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105 503 SAYRLVIHGLCKSKKVDMAIQVLELMISS----RYKP-DDTVFSTIVKKVADDGMTEEAYKLWQKLIEW 566 (577)
Q Consensus 503 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (577)
..+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++.++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45666777788888888888888877642 1111 1345667778888888888888888887763
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=0.00014 Score=72.56 Aligned_cols=57 Identities=5% Similarity=0.065 Sum_probs=36.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008105 124 LQNFCSRGKLTDASKLIDIMARRNQIPDF----------------HFCINLIRGLIRIDRIEKASKVLQIMVM 180 (577)
Q Consensus 124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 180 (577)
.+.+.+.|++++|++.|..+.+....... .++..+...|.+.|++++|.+.+..+.+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46678889999999999888876433211 1244556666666666666666655543
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=2.4e-05 Score=65.64 Aligned_cols=96 Identities=14% Similarity=0.011 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----H
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQI-PD----FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGV-PD----T 187 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~ 187 (577)
.++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+.... .+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45677777788888888888888776653111 01 124555555566666666666666655432100 01 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH
Q 008105 188 ITYNMMVGGLCKRGQIRSAIALLDEM 213 (577)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~~~~~~ 213 (577)
..+..+...+...|++++|.+.+++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 23444444455555555555555444
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.08 E-value=3.3e-05 Score=77.81 Aligned_cols=88 Identities=10% Similarity=-0.054 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008105 188 ITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQV 267 (577)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 267 (577)
..|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|++.++.. +.+...+..+...+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 455555555666666666666666555443 3345555566666666666666666666655442 33444555555555
Q ss_pred HHcCCHHHHH
Q 008105 268 CKQCGIARAI 277 (577)
Q Consensus 268 ~~~g~~~~A~ 277 (577)
.+.++.+++.
T Consensus 396 ~~~~~~~~a~ 405 (457)
T 1kt0_A 396 KKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.07 E-value=0.00016 Score=58.03 Aligned_cols=94 Identities=13% Similarity=0.005 Sum_probs=62.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 008105 121 NKILQNFCSRGKLTDASKLIDIMARRNQIPDF---HFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD---TITYNMMV 194 (577)
Q Consensus 121 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li 194 (577)
..+...+.+.|++++|...|+++.+..+. +. ..+..+..++.+.|++++|...|+...+..+ .+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHH
Confidence 34566677777788887777777765322 22 3566666777777777777777777776542 22 45566666
Q ss_pred HHHHhcCChHHHHHHHHHHhhC
Q 008105 195 GGLCKRGQIRSAIALLDEMSVS 216 (577)
Q Consensus 195 ~~~~~~g~~~~A~~~~~~~~~~ 216 (577)
.++.+.|++++|...|+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777776654
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.02 E-value=1.4e-05 Score=63.48 Aligned_cols=87 Identities=14% Similarity=0.007 Sum_probs=63.6
Q ss_pred hcCChhhHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008105 129 SRGKLTDASKLIDIMARRN--QIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSA 206 (577)
Q Consensus 129 ~~g~~~~A~~l~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 206 (577)
..|++++|+..|++.++.+ -+.+..++..+...|.+.|++++|++.|++.++.. +.+...+..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3578888888888888764 23355677778888888888888888888888775 34577777888888888888888
Q ss_pred HHHHHHHhhC
Q 008105 207 IALLDEMSVS 216 (577)
Q Consensus 207 ~~~~~~~~~~ 216 (577)
.+.|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887654
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.02 E-value=0.0002 Score=57.48 Aligned_cols=95 Identities=8% Similarity=0.014 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHH
Q 008105 155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDT---ITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPD---VITYNTI 228 (577)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~l 228 (577)
+..+...+.+.|++++|.+.|+.+.+..+ .+. ..+..+...+.+.|++++|...|++..+.. +.+ ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 33455666777788888887777776542 222 456666777777777777777777776553 222 5556667
Q ss_pred HHHHHhCCChHHHHHHHHHHHHC
Q 008105 229 LRTMFDNGKFKQAIGFWKDQLRK 251 (577)
Q Consensus 229 i~~~~~~~~~~~A~~~~~~~~~~ 251 (577)
..++...|++++|...|+++...
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777777664
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.99 E-value=1.6e-05 Score=80.51 Aligned_cols=120 Identities=12% Similarity=0.015 Sum_probs=82.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105 124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI 203 (577)
Q Consensus 124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 203 (577)
...+.+.|++++|++.|++.++.. +.+..++..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|.+.|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 344566788888888888888764 3357777888888888888888888888888765 34667777788888888888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhCCChHHHHHHHH
Q 008105 204 RSAIALLDEMSVSGCEPDVITYNTILRT--MFDNGKFKQAIGFWK 246 (577)
Q Consensus 204 ~~A~~~~~~~~~~g~~~~~~~~~~li~~--~~~~~~~~~A~~~~~ 246 (577)
++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888777653 2233444444444 666777777777766
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.94 E-value=0.00012 Score=73.70 Aligned_cols=97 Identities=6% Similarity=-0.019 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 008105 222 VITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNF 301 (577)
Q Consensus 222 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 301 (577)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4677778888888888888888888888764 5577788888888888888888888888887753 2345677777788
Q ss_pred HHhcCCHHHHH-HHHHHHhh
Q 008105 302 SCKQGKYDDAV-LVINNLLS 320 (577)
Q Consensus 302 ~~~~g~~~~A~-~~~~~m~~ 320 (577)
+.+.++.+++. ..+..|..
T Consensus 395 ~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88888877765 34555543
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.93 E-value=8.5e-05 Score=72.33 Aligned_cols=137 Identities=10% Similarity=-0.099 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008105 119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLC 198 (577)
Q Consensus 119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 198 (577)
.+..+...+.+.|++++|+..|++.++.- ++. ......+++. +.. +.+...|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~-------~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA-------KLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG-------GGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH-------HHH-HHHHHHHHHHHHHHH
Confidence 35666677777777777777777666520 000 0000000000 010 123455666666666
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008105 199 KRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAI 277 (577)
Q Consensus 199 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 277 (577)
+.|++++|++.+++..+.. +.+...|..+..+|...|++++|++.|++.++.. +.+...+..+...+.+.++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666543 3355666666666666667777766666666542 335555555656666555555554
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.91 E-value=3.2e-05 Score=78.28 Aligned_cols=121 Identities=15% Similarity=0.074 Sum_probs=80.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 008105 158 LIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGK 237 (577)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 237 (577)
+...+.+.|++++|.+.|++.++.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...|..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3344566788888888888877764 3457777778888888888888888888877764 4466777777777888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 008105 238 FKQAIGFWKDQLRKGCPPYLITYTILIEQ--VCKQCGIARAIEVLD 281 (577)
Q Consensus 238 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 281 (577)
+++|++.|++.++.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888887777653 2233344444444 666777777777766
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.91 E-value=0.00014 Score=70.81 Aligned_cols=137 Identities=10% Similarity=-0.048 Sum_probs=99.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105 155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD 234 (577)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 234 (577)
+..+...+.+.|++++|++.|++.++.- ++ ...... .++..... +.+...|..+..+|.+
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~----------~~~~~~-------~~~~~~~~-~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--EG----------SRAAAE-------DADGAKLQ-PVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------HHHHSC-------HHHHGGGH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHh--hc----------CccccC-------hHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 5556667777777777777777766420 00 000001 11111111 2356788899999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008105 235 NGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVL 313 (577)
Q Consensus 235 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 313 (577)
.|++++|++.+++.++.. +.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+...+...++.+++.+
T Consensus 286 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999864 5578899999999999999999999999998874 3366778888888888888887764
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.89 E-value=0.00016 Score=61.07 Aligned_cols=99 Identities=7% Similarity=-0.010 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHc--------CC---------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARR--------NQ---------IPDFHFCINLIRGLIRIDRIEKASKVLQIMV 179 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~--------~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 179 (577)
...+......+.+.|++++|+..|.+.+.. .. +.+...|..+..+|.+.|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456788889999999999999999888764 10 1122345555555556666666666666655
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 008105 180 MSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVS 216 (577)
Q Consensus 180 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 216 (577)
+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 543 334555555555566666666666666555544
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.88 E-value=2.6e-05 Score=61.85 Aligned_cols=87 Identities=14% Similarity=0.052 Sum_probs=61.8
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHH
Q 008105 444 KKGCMEKAMVLYGQMMENG--ISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMA 521 (577)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 521 (577)
..|++++|+..|++.++.+ -+.+...+..+..+|...|++++|.+.|++..+.... +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 3577888888888888753 1223556777888888888888888888888775432 466777788888888888888
Q ss_pred HHHHHHHHHC
Q 008105 522 IQVLELMISS 531 (577)
Q Consensus 522 ~~~~~~m~~~ 531 (577)
+..+++.++.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887753
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.83 E-value=0.00024 Score=59.82 Aligned_cols=99 Identities=13% Similarity=-0.014 Sum_probs=63.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CC---------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 008105 152 FHFCINLIRGLIRIDRIEKASKVLQIMVMS--------GG---------VPDTITYNMMVGGLCKRGQIRSAIALLDEMS 214 (577)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------g~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 214 (577)
...+......+.+.|++++|+..|++.++. .. +.+...|..+..+|.+.|++++|...+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666778888999999999999888764 10 1123455556666666666666666666665
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 008105 215 VSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRK 251 (577)
Q Consensus 215 ~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 251 (577)
+.. +.+...|..+..+|...|++++|...|++.+..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 543 345556666666666666666666666665554
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.83 E-value=8.6e-05 Score=74.70 Aligned_cols=125 Identities=9% Similarity=0.004 Sum_probs=68.7
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCC-Ccc-HHHHHH
Q 008105 442 LAKKGCMEKAMVLYGQMMEN---GISPD----DITHRTLIWGFCRADQVEEAVDLLKEIGK-----RGN-KMR-NSAYRL 507 (577)
Q Consensus 442 ~~~~g~~~~A~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~~~-~~~~~~ 507 (577)
+...|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|..++++..+ .|. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666655431 11121 33566666666666666666666666543 121 122 334666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105 508 VIHGLCKSKKVDMAIQVLELMIS---SRYKPD----DTVFSTIVKKVADDGMTEEAYKLWQKLIEW 566 (577)
Q Consensus 508 li~~~~~~g~~~~A~~~~~~m~~---~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (577)
|...|...|++++|+.++++.++ .-+-|+ ..+...+..++...|++++|+.++.++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777776666653 111122 233344555666667777777777776653
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.83 E-value=5.6e-05 Score=72.72 Aligned_cols=149 Identities=9% Similarity=0.001 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG 196 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 196 (577)
...+..+...+.+.|++++|...|++.+... |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 3456777888888899999999998887753 33221 112233333322211 1356677777
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHH
Q 008105 197 LCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQ-VCKQCGIAR 275 (577)
Q Consensus 197 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 275 (577)
|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|+..|++.++.. +.+...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888887777653 4467777777888888888888888887776542 2234444444443 233455667
Q ss_pred HHHHHHHHHHc
Q 008105 276 AIEVLDDMAIE 286 (577)
Q Consensus 276 A~~~~~~~~~~ 286 (577)
+.+.|..|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77777777654
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.83 E-value=4.2e-05 Score=73.57 Aligned_cols=152 Identities=12% Similarity=0.055 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008105 397 IVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWG 476 (577)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 476 (577)
...+..+...+.+.|++++|...|+...... |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 3445555556666667777777666655432 22211 112222233222111 1367888889
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCCHH
Q 008105 477 FCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPD-DTVFSTIVKK-VADDGMTE 554 (577)
Q Consensus 477 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~-~~~~g~~~ 554 (577)
|.+.|++++|+..+++..+... .+...|..+..+|...|++++|...|++.++ +.|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887642 3677888899999999999999999999874 3454 4445555544 34456778
Q ss_pred HHHHHHHHHHHcCCCC
Q 008105 555 EAYKLWQKLIEWKVFE 570 (577)
Q Consensus 555 ~A~~~~~~~~~~~~~~ 570 (577)
++.+.++++.+..+.+
T Consensus 317 ~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEG 332 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHhhCCCCCC
Confidence 8888999998866544
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.82 E-value=0.00025 Score=58.63 Aligned_cols=63 Identities=11% Similarity=0.008 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC------Ch-----hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIP------DF-----HFCINLIRGLIRIDRIEKASKVLQIMVM 180 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~------~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~ 180 (577)
..+......+.+.|++++|+..|++.++..+.. +. ..|..+..++.+.|++++|+..+++.++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345667777888888888888888887764321 11 1555555556666666666666555554
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.81 E-value=0.00016 Score=59.77 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=56.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCc------c-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCC
Q 008105 472 TLIWGFCRADQVEEAVDLLKEIGKRGNKM------R-----NSAYRLVIHGLCKSKKVDMAIQVLELMISS-----RYKP 535 (577)
Q Consensus 472 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~------~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p 535 (577)
.....+.+.|++++|.+.|++..+..... + ...|..+..++.+.|++++|+..+++.++. .+.|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 33344445555555555555544421110 1 226666667777777777777777776642 1145
Q ss_pred C-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008105 536 D-DTVF----STIVKKVADDGMTEEAYKLWQKLIEWK 567 (577)
Q Consensus 536 ~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (577)
+ ...| .....++...|++++|+..|++.++..
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4 4456 677777777777777777777777643
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.80 E-value=0.0015 Score=67.24 Aligned_cols=175 Identities=7% Similarity=-0.025 Sum_probs=122.9
Q ss_pred HhcCC-hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105 128 CSRGK-LTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDR----------IEKASKVLQIMVMSGGVPDTITYNMMVGG 196 (577)
Q Consensus 128 ~~~g~-~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 196 (577)
.+.|+ -++|++.++.++..++. +..+|+.--..+.+.|+ ++++++.++.+.+.. +-+..+|+.-...
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~ 116 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 116 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34444 45778888888887543 66777777666766666 888888888888776 4577778877777
Q ss_pred HHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---
Q 008105 197 LCKRG--QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNG-KFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQ--- 270 (577)
Q Consensus 197 ~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 270 (577)
+.+.| +++++++.++++.+.. +.+..+|+.-.-.+.+.| .++++++.++++++.. +-|..+|+.....+.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCC
T ss_pred HHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccc
Confidence 77888 6688888888888765 567778887777777777 7888888888877653 55777777766666553
Q ss_pred -----------CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 008105 271 -----------CGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGK 307 (577)
Q Consensus 271 -----------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 307 (577)
+.++++.+.+++..... +-|...|+.+-..+.+.++
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34566677776666543 3355666666555555554
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.77 E-value=0.00083 Score=54.81 Aligned_cols=77 Identities=5% Similarity=-0.108 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----CCChHHHH
Q 008105 167 RIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD----NGKFKQAI 242 (577)
Q Consensus 167 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~ 242 (577)
++++|.++|++..+.| .++.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3444444444444443 22221 3333333344444444444444332 33344444444433 34444444
Q ss_pred HHHHHHHHC
Q 008105 243 GFWKDQLRK 251 (577)
Q Consensus 243 ~~~~~~~~~ 251 (577)
+.|++..+.
T Consensus 82 ~~~~~Aa~~ 90 (138)
T 1klx_A 82 QYYSKACGL 90 (138)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcC
Confidence 444444433
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.74 E-value=0.0015 Score=67.25 Aligned_cols=172 Identities=9% Similarity=0.011 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-
Q 008105 378 VDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGM----------LNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKG- 446 (577)
Q Consensus 378 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g- 446 (577)
.++|++.++++...+ +-+..+|+.--..+.+.|+ ++++++.++.+.+.. +.+..+|+.-.-.+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 456677777777664 4455556555555555555 777777777777665 556777777777777777
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc---------
Q 008105 447 -CMEKAMVLYGQMMENGISPDDITHRTLIWGFCRAD-QVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKS--------- 515 (577)
Q Consensus 447 -~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------- 515 (577)
+++++++.++++.+.. +-+...|+.-...+.+.| .++++++.++++.+.++. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 6688888888887754 346777777777777777 788888888888776543 667777666666552
Q ss_pred -----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 008105 516 -----KKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTE 554 (577)
Q Consensus 516 -----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 554 (577)
+.++++++.+++++... +-|...|..+-..+.+.++.+
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 45788888888887642 335677777777777666643
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.74 E-value=0.0011 Score=54.12 Aligned_cols=111 Identities=14% Similarity=0.008 Sum_probs=70.1
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHH
Q 008105 131 GKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK----RGQIRSA 206 (577)
Q Consensus 131 g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A 206 (577)
+++++|++.|++..+.| +.... +...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777776665 22222 5555555566666777777776654 55666666666666 6677777
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCC
Q 008105 207 IALLDEMSVSGCEPDVITYNTILRTMFD----NGKFKQAIGFWKDQLRKG 252 (577)
Q Consensus 207 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~ 252 (577)
.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777766654 55566666666666 666667777666666655
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.66 E-value=5.2e-05 Score=59.05 Aligned_cols=95 Identities=12% Similarity=0.047 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHH
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD------TIT 189 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~------~~~ 189 (577)
+...|..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|++.+++.++... .+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS-TAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS-STTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CccHHHHHHHH
Confidence 45667778888888888888888888887764 33667777777888888888888888888876542 12 444
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 008105 190 YNMMVGGLCKRGQIRSAIALLDE 212 (577)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~~~~~ 212 (577)
+..+..++...|+++.|.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHH
Confidence 55555555556655555544433
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00013 Score=56.64 Aligned_cols=89 Identities=11% Similarity=0.057 Sum_probs=53.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-------HH
Q 008105 151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPD-------VI 223 (577)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-------~~ 223 (577)
+...+..+...+.+.|++++|.+.|++.++.. +.+...|..+..++.+.|++++|.+.+++..+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 34456666666777777777777777776654 3356666666777777777777777777766542 32 33
Q ss_pred HHHHHHHHHHhCCChHHHH
Q 008105 224 TYNTILRTMFDNGKFKQAI 242 (577)
Q Consensus 224 ~~~~li~~~~~~~~~~~A~ 242 (577)
.+..+..++...|+++.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHhHhhhH
Confidence 4444444444444444443
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.50 E-value=0.0004 Score=69.84 Aligned_cols=52 Identities=19% Similarity=0.100 Sum_probs=25.3
Q ss_pred HccCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008105 338 GSRGCWDAVDKILDIMNEA-----S--HSPTVFTYNILINGLCKYGLVDRAINSFNQMV 389 (577)
Q Consensus 338 ~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 389 (577)
...|++++|..++++..+. | .+....+++.|...|...|++++|..++++.+
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 378 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV 378 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3455556555555544321 1 11122345555555555555555555555443
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.50 E-value=0.0011 Score=49.05 Aligned_cols=81 Identities=9% Similarity=0.014 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG 196 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 196 (577)
...+..+...+.+.|++++|...|++..+.. +.+..++..+...+.+.|++++|.+.+++..+.. +.+...+..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4566667777777777777777777776653 2355566666666777777777777777766653 2344555555554
Q ss_pred HHh
Q 008105 197 LCK 199 (577)
Q Consensus 197 ~~~ 199 (577)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.45 E-value=0.0011 Score=52.00 Aligned_cols=79 Identities=9% Similarity=0.080 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 008105 135 DASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMS 214 (577)
Q Consensus 135 ~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 214 (577)
+|+..|++..+.. +.+...+..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666543 2355566666666666666666666666666554 3345556666666666666666666666554
Q ss_pred h
Q 008105 215 V 215 (577)
Q Consensus 215 ~ 215 (577)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.44 E-value=0.0012 Score=48.87 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 008105 153 HFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVS 216 (577)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 216 (577)
..+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.|++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344445555555555555555555555443 223444555555555555555555555555443
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.38 E-value=0.00094 Score=52.28 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 008105 171 ASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR 250 (577)
Q Consensus 171 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 250 (577)
|++.|++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+..++...|++++|...|++.++
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555443 2345555555666666666666666666555443 33445555555555555555555555555443
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.32 E-value=0.00053 Score=56.55 Aligned_cols=95 Identities=8% Similarity=0.002 Sum_probs=68.7
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105 128 CSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRI----------EKASKVLQIMVMSGGVPDTITYNMMVGGL 197 (577)
Q Consensus 128 ~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 197 (577)
.+.+.+++|++.+++..+..+ .+...|..+..++.+.+++ ++|+..|++.++.. +.+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 345678899999999988753 4888888888888887765 48888888888775 33667777788888
Q ss_pred HhcC-----------ChHHHHHHHHHHhhCCCCCCHHHHH
Q 008105 198 CKRG-----------QIRSAIALLDEMSVSGCEPDVITYN 226 (577)
Q Consensus 198 ~~~g-----------~~~~A~~~~~~~~~~g~~~~~~~~~ 226 (577)
...| ++++|.+.|++..+. .|+...|.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~ 128 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 128 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence 7664 677777777776665 45544443
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.21 E-value=0.0017 Score=49.32 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS 181 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 181 (577)
.++..+..+...|.+.|++++|+..|++.++..+ .+..+|..+..+|.+.|++++|.+.|++.++.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567788888888888888888888888887753 36667888888888888888888888877643
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.14 E-value=0.001 Score=54.77 Aligned_cols=87 Identities=17% Similarity=0.084 Sum_probs=61.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008105 163 IRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI----------RSAIALLDEMSVSGCEPDVITYNTILRTM 232 (577)
Q Consensus 163 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 232 (577)
.+.+.+++|++.++...+.. +.+...|+.+..++...+++ ++|+..|++..+.. +.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 45567888888888888876 55788888888888877765 47777777777654 34566777777777
Q ss_pred HhCC-----------ChHHHHHHHHHHHHC
Q 008105 233 FDNG-----------KFKQAIGFWKDQLRK 251 (577)
Q Consensus 233 ~~~~-----------~~~~A~~~~~~~~~~ 251 (577)
...| ++++|++.|++.++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 6653 666666666666654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.98 E-value=0.0041 Score=47.18 Aligned_cols=63 Identities=14% Similarity=0.043 Sum_probs=35.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 008105 151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMS 214 (577)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 214 (577)
+...+..+...+.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555666666666666666655543 2234455555555666666666666555544
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.71 E-value=0.093 Score=56.74 Aligned_cols=152 Identities=17% Similarity=0.173 Sum_probs=87.2
Q ss_pred HHhcCChHHHHH-HHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105 197 LCKRGQIRSAIA-LLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR 275 (577)
Q Consensus 197 ~~~~g~~~~A~~-~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 275 (577)
....+++++|.+ ++..+ ++......++..+.+.|..++|+++.+. .. .-.......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHH
Confidence 345677777766 44211 1122336666777777777777765421 11 11234566788888
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 008105 276 AIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNE 355 (577)
Q Consensus 276 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 355 (577)
|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-+....
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 88775443 3567788888888888888888888877652 23344444556666655555544444
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008105 356 ASHSPTVFTYNILINGLCKYGLVDRAINSFNQ 387 (577)
Q Consensus 356 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (577)
.|. ++....+|.+.|++++|++++.+
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 331 23333344555555555555544
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.70 E-value=0.033 Score=52.76 Aligned_cols=73 Identities=12% Similarity=0.031 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 008105 254 PPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITY 330 (577)
Q Consensus 254 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 330 (577)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 4455666666555555666666666666666653 55555556666666667777777666666655 4444444
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.65 E-value=0.023 Score=53.81 Aligned_cols=72 Identities=10% Similarity=-0.046 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 008105 465 PDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVF 540 (577)
Q Consensus 465 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 540 (577)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++... +.|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 455555555555555566666666666666543 4555555555566666666666666666653 24554443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.62 E-value=0.0071 Score=59.70 Aligned_cols=87 Identities=9% Similarity=-0.085 Sum_probs=46.6
Q ss_pred hcCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCC-Ccc-HHHHHHHH
Q 008105 444 KKGCMEKAMVLYGQMME---NGISPD----DITHRTLIWGFCRADQVEEAVDLLKEIGK-----RGN-KMR-NSAYRLVI 509 (577)
Q Consensus 444 ~~g~~~~A~~~~~~m~~---~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~~~-~~~~~~li 509 (577)
..|++++|+.++++..+ .-+.|+ ..+++.|..+|...|++++|..++++..+ .|. .|+ ..+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34566666666666543 111222 23456666666666666666666665543 121 122 23455566
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 008105 510 HGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 510 ~~~~~~g~~~~A~~~~~~m~~ 530 (577)
..|...|++++|+.++++.++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 666666666666666666654
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.61 E-value=0.0042 Score=46.80 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=27.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCccHH-HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 475 WGFCRADQVEEAVDLLKEIGKRGNKMRNS-AYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 475 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
..+...|++++|.+.+++..+... .+.. .+..+..++...|++++|.+.|++.++
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334455555555555555544321 1333 455555555555555555555555554
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.49 E-value=0.051 Score=58.83 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=20.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 008105 509 IHGLCKSKKVDMAIQVLELMISSRYKPDD----TVFSTIVKKVADDGMTEEA 556 (577)
Q Consensus 509 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A 556 (577)
++.|.+.+++++|..+-+.. .|.. .+.......+...|+.+.|
T Consensus 756 ~~~~~~~~~~~~A~~lA~~~-----~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 756 KDLLIKSQRFSEAAFLGSTY-----GLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHTTCHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHcCChHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHhccchhHH
Confidence 34444555555555554432 2333 3334444455556664433
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.47 E-value=0.017 Score=56.96 Aligned_cols=94 Identities=11% Similarity=-0.040 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCC-Ccc-H
Q 008105 437 TLIDGLAKKGCMEKAMVLYGQMMENG---ISPD----DITHRTLIWGFCRADQVEEAVDLLKEIGK-----RGN-KMR-N 502 (577)
Q Consensus 437 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~~~-~ 502 (577)
..+..+.+.|++++|+.++++..+.. +.|+ ..+++.+..+|...|++++|+.++++... .|. .|+ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33455566777888888877776421 2222 34567777777777888888887777653 221 222 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 503 SAYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 503 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
.+++.+...|...|++++|+.++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4567777777778888888877777776
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.39 E-value=0.023 Score=56.07 Aligned_cols=87 Identities=13% Similarity=-0.035 Sum_probs=50.5
Q ss_pred hcCChhHHHHHHHHHhh---CCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHHHHH
Q 008105 409 KEGMLNEALQLLHLLNG---SSCSP----CLITYNTLIDGLAKKGCMEKAMVLYGQMME-----NG-ISPD-DITHRTLI 474 (577)
Q Consensus 409 ~~g~~~~A~~~~~~~~~---~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~~~~~li 474 (577)
..|++++|..++++..+ .-+.| ...+++.|..+|...|++++|+.++++..+ .| -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34566777776665433 11112 124566666777777777777777776643 22 1122 33566666
Q ss_pred HHHHhcCCHHHHHHHHHHHhh
Q 008105 475 WGFCRADQVEEAVDLLKEIGK 495 (577)
Q Consensus 475 ~~~~~~g~~~~A~~~~~~m~~ 495 (577)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 777777777777777766655
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.32 E-value=0.032 Score=45.41 Aligned_cols=87 Identities=15% Similarity=0.239 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCc--cHHHHHHHHHHHHhcCChHHH
Q 008105 447 CMEKAMVLYGQMMENGISPDDITHRTLIWGFCRAD---QVEEAVDLLKEIGKRGNKM--RNSAYRLVIHGLCKSKKVDMA 521 (577)
Q Consensus 447 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A 521 (577)
....+.+-|.+..+.|. ++..+...+..++++++ +++++..++++..+.+ .| +...+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 45667777777777654 78888888889999988 5669999999988764 23 345555677788999999999
Q ss_pred HHHHHHHHHCCCCCCH
Q 008105 522 IQVLELMISSRYKPDD 537 (577)
Q Consensus 522 ~~~~~~m~~~~~~p~~ 537 (577)
.++++.+++ +.|+.
T Consensus 91 ~~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHHH--HCTTC
T ss_pred HHHHHHHHh--cCCCC
Confidence 999999985 36653
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.28 E-value=0.049 Score=53.73 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=63.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-H
Q 008105 402 TVLGALCKEGMLNEALQLLHLLNGSS---CSPC----LITYNTLIDGLAKKGCMEKAMVLYGQMME-----NG-ISPD-D 467 (577)
Q Consensus 402 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~ 467 (577)
..+..+.+.|++++|+.++++..+.. +.|+ ..+++.+...|...|++++|+.++++..+ .| -.|+ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33455666778888888887766431 2222 34677777888888888888888887753 22 1122 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 468 ITHRTLIWGFCRADQVEEAVDLLKEIGK 495 (577)
Q Consensus 468 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 495 (577)
.+++.|...|...|++++|..++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4577778888888888888888877766
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.20 E-value=0.042 Score=40.78 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008105 464 SPDDITHRTLIWGFCRADQ---VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS 531 (577)
Q Consensus 464 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 531 (577)
+.|...+..+..++...++ .++|..++++..+.+.. +......+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3566677777777655444 67888888887775432 5666677777778888888888888888753
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.15 E-value=0.046 Score=40.82 Aligned_cols=59 Identities=8% Similarity=0.092 Sum_probs=47.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008105 123 ILQNFCSRGKLTDASKLIDIMARRNQIPDFH-FCINLIRGLIRIDRIEKASKVLQIMVMSG 182 (577)
Q Consensus 123 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g 182 (577)
....+.+.|++++|+..|+++.+.. +.+.. .+..+..++...|++++|.+.|++.++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4567788899999999999888864 23566 78888888888999999999998888775
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.00 E-value=0.051 Score=44.19 Aligned_cols=82 Identities=17% Similarity=0.111 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 008105 413 LNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKG---CMEKAMVLYGQMMENGISP--DDITHRTLIWGFCRADQVEEAV 487 (577)
Q Consensus 413 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~ 487 (577)
...+.+.|.+..+.+ +++..+...+..++++.+ +.+++..+|++..+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 445555566555555 356666666666777766 5557777777776643 23 2445555666667777777777
Q ss_pred HHHHHHhhC
Q 008105 488 DLLKEIGKR 496 (577)
Q Consensus 488 ~~~~~m~~~ 496 (577)
++++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777777664
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.99 E-value=0.41 Score=37.50 Aligned_cols=139 Identities=13% Similarity=0.088 Sum_probs=91.2
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008105 409 KEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVD 488 (577)
Q Consensus 409 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 488 (577)
-.|..++..++..+...+. +..-||-+|--....-+-+-..++++..-+. -| ...+|++.....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHH
Confidence 3466666666666665533 3445555555444444444444444444321 11 123455555555
Q ss_pred HHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105 489 LLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV 568 (577)
Q Consensus 489 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (577)
.+-.+- .+...+...++.+...|+-+.-.+++..+.. +-+|++...-.+..+|.+.|+..+|.+++++.-+.|+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 544332 2556777888889999999999999988654 5578899999999999999999999999999988886
Q ss_pred C
Q 008105 569 F 569 (577)
Q Consensus 569 ~ 569 (577)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.98 E-value=0.055 Score=40.16 Aligned_cols=67 Identities=9% Similarity=-0.042 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008105 115 NDEKTNNKILQNFCSRGK---LTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSG 182 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~---~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 182 (577)
.|+..+..+..++...++ .++|..++++.++..+ -+..+...+...+.+.|++++|+..|+.+++..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 455666666666654443 5677777777776642 256666666666667777777777777776654
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.33 Score=40.50 Aligned_cols=128 Identities=14% Similarity=0.123 Sum_probs=71.5
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008105 406 ALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEE 485 (577)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 485 (577)
...+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 344567777777766655 2456777777777777777777777766542 3344444555666665
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105 486 AVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKL 563 (577)
Q Consensus 486 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 563 (577)
-.++-+.....| -++.....+.-.|+++++.+++.+. |..|....+ ....|..+.|.++.+++
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence 555544444433 1223333455567777777776554 332322111 12246666666666554
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.87 E-value=0.07 Score=42.76 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCH-HHHHHHHHH---H---HhcCCHHHHHHHHHHHhhCC
Q 008105 431 CLITYNTLIDGLAKKGCM------EKAMVLYGQMMENGISPDD-ITHRTLIWG---F---CRADQVEEAVDLLKEIGKRG 497 (577)
Q Consensus 431 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~-~~~~~li~~---~---~~~g~~~~A~~~~~~m~~~~ 497 (577)
|..+|-..+...-+.|+. ++..++|++.... ++|+. ..|...+.. | ...+++++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 555666666665555666 5666666666543 34431 111111111 1 12345555555555554422
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 498 NKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 498 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
-+- ...|.....--.+.|+++.|.+++.+.+.
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 121 33444444444455555556555555554
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.63 E-value=0.16 Score=46.14 Aligned_cols=108 Identities=10% Similarity=0.110 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh-cCCh
Q 008105 448 MEKAMVLYGQMMENGISPD---DITHRTLIWGFCR-----ADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCK-SKKV 518 (577)
Q Consensus 448 ~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~ 518 (577)
...|...+++.++. .|+ ...|..+...|.. -|+.++|.+.|++..+.+..-+..++....+.++. .|+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777763 465 4567777777877 48888888888888875432235566667777777 4888
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105 519 DMAIQVLELMISSRYK--PDDTVFSTIVKKVADDGMTEEAYKLWQKLIE 565 (577)
Q Consensus 519 ~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (577)
++|.+.+++.+..... |+....+.+ .-++|..++++.-+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~d 297 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhHH
Confidence 8888888888876554 554444333 33566666655443
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.62 E-value=0.12 Score=39.18 Aligned_cols=66 Identities=8% Similarity=0.014 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008105 116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRN------QIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS 181 (577)
Q Consensus 116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 181 (577)
+..-+-.|...+.+.|++..|...|+.+.+.- ..+...++..+..++.+.|+++.|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455677777777777777777777766541 1234455666666666667777776666666654
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.51 E-value=0.083 Score=40.13 Aligned_cols=71 Identities=7% Similarity=-0.007 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008105 465 PDDITHRTLIWGFCRADQVEEAVDLLKEIGKR------GNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDD 537 (577)
Q Consensus 465 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 537 (577)
.+..-+..|...+.+.|+++.|...|+...+. .-.+....+..+..++.+.|++++|..+++++.+. .|+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 35556678888889999999999999887652 11245677888899999999999999999998853 5553
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.35 E-value=0.34 Score=38.87 Aligned_cols=102 Identities=12% Similarity=0.012 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHhcCCh------hhHHHHHHHHHHcCCCCChh-hHHHHHHHH------HhcCCHHHHHHHHHHHHh
Q 008105 114 ENDEKTNNKILQNFCSRGKL------TDASKLIDIMARRNQIPDFH-FCINLIRGL------IRIDRIEKASKVLQIMVM 180 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~~~~~~~~~~~~-~~~~li~~~------~~~g~~~~A~~~~~~~~~ 180 (577)
+.|..+|-..+...-+.|++ ++.+++|++.... ++|+.. .|...+..+ ...++.++|+++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45778888888888888888 7888888888775 455421 112222111 123556666666666654
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 008105 181 SGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSG 217 (577)
Q Consensus 181 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 217 (577)
.+-.- ...|....+.-.++|++..|.+++.+....+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 42222 4555555555555666666666666655554
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.58 Score=39.02 Aligned_cols=101 Identities=10% Similarity=0.135 Sum_probs=56.8
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105 196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR 275 (577)
Q Consensus 196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 275 (577)
.....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 344566666666665554 2556666666666666776666666665421 3334444555666655
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008105 276 AIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINN 317 (577)
Q Consensus 276 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 317 (577)
-.++-+....+| -++.....+.-.|+++++.+++.+
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555444444332 244444555566666666666643
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.94 E-value=0.0002 Score=69.23 Aligned_cols=196 Identities=12% Similarity=0.182 Sum_probs=88.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM 193 (577)
Q Consensus 114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 193 (577)
..|+..|..+|....+.|++++-++.+.-..+. ..++.+=+.|+-+|++.++..+-.+++. .|+..-...+
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~V 150 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQV 150 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHH
Confidence 345555566666666666666655555433332 2233344455556666555443222211 2444444455
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008105 194 VGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGI 273 (577)
Q Consensus 194 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 273 (577)
.+-|...|.++.|.-+|..+.. |..|...+.+.|++..|.+.-++ .-++.||-.+-.+|...+.+
T Consensus 151 GDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~Ef 215 (624)
T 3lvg_A 151 GDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEF 215 (624)
T ss_dssp HHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTT
T ss_pred HHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHH
Confidence 5555556666655555544431 11222223333333333222111 12445555555556555555
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc
Q 008105 274 ARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGS 339 (577)
Q Consensus 274 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 339 (577)
.-|.-.--.+.-. || -...++..|-+.|.+++-+.+++.-.... ......|+-|.-.|++
T Consensus 216 rLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 216 RLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp TTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 5444333222211 11 12233444555555555555555544221 2334445555444444
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.53 E-value=0.24 Score=38.67 Aligned_cols=85 Identities=14% Similarity=0.175 Sum_probs=50.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCc--cHHHHHHHHHHHHhcCCh
Q 008105 444 KKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEE---AVDLLKEIGKRGNKM--RNSAYRLVIHGLCKSKKV 518 (577)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~ 518 (577)
.......+.+-|.+....|. ++..+-..+.+++.++.+... ++.++++..+.+ .| .....-.+.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 33344555555555554442 566666666677777665544 677777766543 12 233344455567777777
Q ss_pred HHHHHHHHHHHH
Q 008105 519 DMAIQVLELMIS 530 (577)
Q Consensus 519 ~~A~~~~~~m~~ 530 (577)
++|.+.++.+++
T Consensus 91 ~~A~~~~~~lL~ 102 (126)
T 1nzn_A 91 EKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777764
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.50 E-value=1.4 Score=34.67 Aligned_cols=64 Identities=17% Similarity=0.110 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008105 328 ITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKN 392 (577)
Q Consensus 328 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 392 (577)
......++.+...|+.++..+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3344445555666666666666666433 234556666666666666666666666666666655
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.11 E-value=0.51 Score=42.91 Aligned_cols=112 Identities=11% Similarity=-0.101 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHH-Hhc--CC------hhhHHHHHHHHHHcCCCC-ChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHh
Q 008105 116 DEKTNNKILQNF-CSR--GK------LTDASKLIDIMARRNQIP-DFHFCINLIRGLIR-----IDRIEKASKVLQIMVM 180 (577)
Q Consensus 116 ~~~~~~~li~~~-~~~--g~------~~~A~~l~~~~~~~~~~~-~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~ 180 (577)
....|..++.+- ... |. ...|..++++.++....- +-..|..+...|.+ .|+.++|.+.|++.++
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~ 232 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR 232 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH
Confidence 345666665533 332 33 356777777777753221 24567778777877 4888888888888888
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHhhCCCC--CCHHHHHH
Q 008105 181 SGGVPDTITYNMMVGGLCKR-GQIRSAIALLDEMSVSGCE--PDVITYNT 227 (577)
Q Consensus 181 ~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~g~~--~~~~~~~~ 227 (577)
.+..-+..++....+.+++. |+.+++.+.+++....... |+....+.
T Consensus 233 LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 233 YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 76434577777778888774 8888888888888876544 55444443
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.93 E-value=0.27 Score=38.41 Aligned_cols=85 Identities=13% Similarity=0.031 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 008105 483 VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDM---AIQVLELMISSRYKP--DDTVFSTIVKKVADDGMTEEAY 557 (577)
Q Consensus 483 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 557 (577)
...+.+-|.+....|. ++..+-..+..++.++.+..+ ++.+++...+.+ .| .....-.|.-++.+.|++++|+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444444444444332 444444445666666665554 666666655432 12 1223334445666666666666
Q ss_pred HHHHHHHHcCCC
Q 008105 558 KLWQKLIEWKVF 569 (577)
Q Consensus 558 ~~~~~~~~~~~~ 569 (577)
++++.+++..|.
T Consensus 95 ~~~~~lL~~eP~ 106 (126)
T 1nzn_A 95 KYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHhCCC
Confidence 666666664443
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.90 E-value=0.0028 Score=61.43 Aligned_cols=372 Identities=12% Similarity=0.076 Sum_probs=169.8
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------
Q 008105 115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGG----------- 183 (577)
Q Consensus 115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~----------- 183 (577)
.++..=+.|+-+|++.+++.+-.+++ -.||..-...+..-|...|.++.|.-+|..+....-
T Consensus 114 ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~y 186 (624)
T 3lvg_A 114 RESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY 186 (624)
T ss_dssp CSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGG
T ss_pred cccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 34455578999999999988765544 247777788899999999999999988887632110
Q ss_pred ---------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 008105 184 ---------VPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCP 254 (577)
Q Consensus 184 ---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 254 (577)
..++.||-.+-.+|...+.+.-|...=-.+.- .+ .-...++..|-..|.+++-+.+++.-+.. -.
T Consensus 187 q~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---ha--deL~elv~~YE~~G~f~ELIsLlEaglgl-Er 260 (624)
T 3lvg_A 187 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HA--DELEELINYYQDRGYFEELITMLEAALGL-ER 260 (624)
T ss_dssp GSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TT
T ss_pred HHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-Cc
Confidence 12333444444444444444444333222221 11 11223344444555555555555544321 12
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCC------CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 008105 255 PYLITYTILIEQVCKQCGIARAIEVLDDMAI-EGCSP------DIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNS 327 (577)
Q Consensus 255 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 327 (577)
.....|+-|.-.|++- +.++-.+-++..-. .+++. ....|.-++-.|++-.+++.|... |.++ .|+.
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~A 334 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDA 334 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHH
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--Chhh
Confidence 3444555555555443 22222221111110 01110 123344444445544444444321 1111 0000
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----------CCCCCH
Q 008105 328 ITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSK----------NCQPDI 397 (577)
Q Consensus 328 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~~~~~~ 397 (577)
.-...+-+...+..+.+---+...-..+. .| ...+-|+..+...=+..++.++|++.-.. .-..+.
T Consensus 335 w~h~~Fkdii~KVaN~EiyYKAi~FYL~e--~P--~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~ 410 (624)
T 3lvg_A 335 WKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNK 410 (624)
T ss_dssp CCGGGGTTTGGGCSCSHHHHHHHHHHTTS--CC--TTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCH
T ss_pred ccHHHHHHHHHHcchHHHHHHHHHHHHHh--Ch--HHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHH
Confidence 00000111111111211111111111111 01 11233333333333334444444332110 112244
Q ss_pred HHHHHHHHHHHhcCChhHHHHH------------HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008105 398 VTYNTVLGALCKEGMLNEALQL------------LHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISP 465 (577)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~------------~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 465 (577)
.+-.++-+.|....+++.-... -+++.+.. -...-..-...|.+.++|+++.++.++
T Consensus 411 aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHe---L~eFRrIAA~LYkkn~rw~qsi~l~Kk-------- 479 (624)
T 3lvg_A 411 SVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHE---LIEFRRIAAYLFKGNNRWKQSVELCKK-------- 479 (624)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCS---SHHHHHHHHHHHHTTCHHHHHSSCSST--------
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCc---hHHHHHHHHHHHHhcccHHHHHHHHHh--------
Confidence 5555666667777776554322 22222221 122223334456667777777655332
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 008105 466 DDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQV 524 (577)
Q Consensus 466 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 524 (577)
...|.-.|.....+|+.+-|.++++-..+.| +...|...+..|...=+++-++++
T Consensus 480 -DklykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 480 -DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp -TCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred -cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 1122333445566777777777777776654 335566666666655566665554
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.30 E-value=10 Score=40.71 Aligned_cols=148 Identities=12% Similarity=0.086 Sum_probs=67.7
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-H---HHHHHHHHhcCC
Q 008105 409 KEGMLNEALQLLHLLNGSSCSPCLITYNTLI--DGLAKKGCMEKAMVLYGQMMENGISPDDIT-H---RTLIWGFCRADQ 482 (577)
Q Consensus 409 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~---~~li~~~~~~g~ 482 (577)
-.|+-+....+++.+.+.. +......+. -++...|+.+.+..+.+.+... .+... | ..+..+|+..|+
T Consensus 502 GTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCC
T ss_pred ccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCC
Confidence 4455555566666554432 222222233 3333566767777776766653 23222 2 223345556677
Q ss_pred HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 008105 483 VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMT-EEAYKLWQ 561 (577)
Q Consensus 483 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 561 (577)
.....++++.+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|...--..+.-+....|.. .+|...+.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 666666776666531 1222222222223334555555555555444422 23322222233333333332 44555555
Q ss_pred HHH
Q 008105 562 KLI 564 (577)
Q Consensus 562 ~~~ 564 (577)
.+.
T Consensus 654 ~L~ 656 (963)
T 4ady_A 654 PLT 656 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 553
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.93 E-value=20 Score=38.65 Aligned_cols=153 Identities=14% Similarity=0.063 Sum_probs=72.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcC
Q 008105 371 GLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGA--LCKEGMLNEALQLLHLLNGSSCSPCLITY--NTLIDGLAKKG 446 (577)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g 446 (577)
.+...|+.+....++..+.+.. +......+..+ +...|+.+.+..+.+.+.... .|....- .++.-+|+..|
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSC
T ss_pred hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCC
Confidence 3445566666666666555431 22222333333 335567777776666665532 2222111 12334555666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCh-HHHHHHH
Q 008105 447 CMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKV-DMAIQVL 525 (577)
Q Consensus 447 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~ 525 (577)
+.....+++..+.+.. ..+......+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++...+
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 7666666777666531 1122222223333444555555556655444432 33333333333333334433 4566666
Q ss_pred HHHH
Q 008105 526 ELMI 529 (577)
Q Consensus 526 ~~m~ 529 (577)
..+.
T Consensus 653 ~~L~ 656 (963)
T 4ady_A 653 DPLT 656 (963)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6665
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.24 E-value=15 Score=36.09 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105 271 CGIARAIEVLDDMAIE-----GCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLL 319 (577)
Q Consensus 271 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 319 (577)
|+++.|.+.+..+.+. +..........++..|.+.++++...+.+..+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5666777666555442 122234445566667777777776666555444
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.93 E-value=12 Score=34.53 Aligned_cols=127 Identities=13% Similarity=0.043 Sum_probs=72.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105 124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI 203 (577)
Q Consensus 124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 203 (577)
++.-...|++=+|.+.++.+.. -|.+++++++|++++..-. ..+.+.|+.
T Consensus 20 l~~~I~~G~yYEAhQ~~Rtl~~---------------Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~ 69 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTLRTIAN---------------RYVRSKSYEHAIELISQGA---------------LSFLKAKQG 69 (312)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHH---------------HHHHHTTCH
T ss_pred HHHHhhccChHHHHHHHHHHHH---------------HHHHhcCHHHHHHHHHHHH---------------HHHHHCCCc
Confidence 3455566777777766655443 4777888888888765542 234455665
Q ss_pred HHHHHH----HHHHhhCCCCCCHHHHHHHHHHHHhCCChH-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHHcCC
Q 008105 204 RSAIAL----LDEMSVSGCEPDVITYNTILRTMFDNGKFK-QAIGFWKDQLR----KG--CPPYLITYTILIEQVCKQCG 272 (577)
Q Consensus 204 ~~A~~~----~~~~~~~g~~~~~~~~~~li~~~~~~~~~~-~A~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~ 272 (577)
..|-++ .+-..+.+++++......++..+..-..-+ .=.++.+++++ .| ..-++..+..+...|.+.++
T Consensus 70 ~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~ 149 (312)
T 2wpv_A 70 GSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDF 149 (312)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCC
Confidence 555443 444455666777776666666654422111 11222333322 21 12366677777777788888
Q ss_pred HHHHHHHH
Q 008105 273 IARAIEVL 280 (577)
Q Consensus 273 ~~~A~~~~ 280 (577)
+.+|..-|
T Consensus 150 ~~~A~~H~ 157 (312)
T 2wpv_A 150 VYEAERYF 157 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777655
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.75 E-value=3.7 Score=32.18 Aligned_cols=74 Identities=16% Similarity=0.276 Sum_probs=48.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008105 462 GISPDDITHRTLIWGFCRADQ---VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDD 537 (577)
Q Consensus 462 g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 537 (577)
+-.|+..+--.+.+++.++.+ ..+++.+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+++ +.|+-
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 335666776677777777665 346777777776654222344555566677888888888888888774 45653
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.68 E-value=5.1 Score=31.36 Aligned_cols=66 Identities=11% Similarity=0.016 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 430 PCLITYNTLIDGLAKKGC---MEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK 495 (577)
Q Consensus 430 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 495 (577)
|+..+--.+.-++.+..+ ..+++.++++..+.+..-....+-.|.-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 333333333444444332 233445555544432111233344444455555555555555555544
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.64 E-value=6.6 Score=31.19 Aligned_cols=73 Identities=15% Similarity=0.259 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008105 463 ISPDDITHRTLIWGFCRADQ---VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDD 537 (577)
Q Consensus 463 ~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 537 (577)
-.|+..+-..+.+++.++.+ ..+++.+++++.+.+..-.....-.+.-++.+.|++++|.++.+.+++. .|+-
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 35777777778888888765 4568888888877543323444555777888999999999999988853 5653
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.28 E-value=2.1 Score=44.98 Aligned_cols=63 Identities=11% Similarity=0.078 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH
Q 008105 429 SPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRAD---------QVEEAVDLLKEI 493 (577)
Q Consensus 429 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m 493 (577)
+.+..-|..|.....+.+++++|.+.|+..... +-+...+..|+..|.+.+ +.+..+.+.-++
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl 681 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKK 681 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHH
Confidence 445566777777777778888888888777764 357777778888777665 555555554444
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.11 E-value=5.6 Score=38.30 Aligned_cols=69 Identities=10% Similarity=0.069 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 008105 472 TLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS-----SRYKPDDTVFS 541 (577)
Q Consensus 472 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 541 (577)
.++..+...|+.+++...+..+.... +.+...|..++.++.+.|+..+|.+.|++..+ .|+.|++.+-.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34455556666666666666655432 23555666666666666666666666665543 36666655543
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.04 E-value=3.1 Score=30.66 Aligned_cols=63 Identities=8% Similarity=0.122 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105 482 QVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVK 545 (577)
Q Consensus 482 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 545 (577)
+.=+..+-++.+...++.|.+......+++|.+.+++.-|.++++-...+ ..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34456666666666777788888888888888888888888888776642 2333445666553
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.63 E-value=1.8 Score=41.77 Aligned_cols=130 Identities=12% Similarity=0.096 Sum_probs=84.9
Q ss_pred CCCCHHHHHHHHHHHH---hcCChhhHHHHHHHHHHc--CCC-CChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCC
Q 008105 113 VENDEKTNNKILQNFC---SRGKLTDASKLIDIMARR--NQI-PDFHFCINLIRGLIRIDRI-EKASKVLQIMVMSGGVP 185 (577)
Q Consensus 113 ~~~~~~~~~~li~~~~---~~g~~~~A~~l~~~~~~~--~~~-~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~g~~~ 185 (577)
..-|...|..++..-. ..|+.+.|...++++... |.. ++... ..+ .....-+++..
T Consensus 108 ~~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~-----------~~w~~~~r~~l~~~~------ 170 (388)
T 2ff4_A 108 NTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-----------FQFVEPFATALVEDK------ 170 (388)
T ss_dssp GGBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-----------STTHHHHHHHHHHHH------
T ss_pred ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCc-----------hhHHHHHHHHHHHHH------
Confidence 4567777877775543 468999999999988764 221 11110 111 11112222221
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 008105 186 DTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR-----KGCPPYLITY 260 (577)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~ 260 (577)
......++..+...|++++|...+..+.... +-+...|..++.++.+.|+..+|++.|+.+.+ .|+.|...+-
T Consensus 171 -~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 171 -VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 1234556777788888888888888877653 55778888888888888888888888887654 4888887765
Q ss_pred H
Q 008105 261 T 261 (577)
Q Consensus 261 ~ 261 (577)
.
T Consensus 249 ~ 249 (388)
T 2ff4_A 249 A 249 (388)
T ss_dssp H
T ss_pred H
Confidence 4
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.24 E-value=8.4 Score=30.59 Aligned_cols=68 Identities=10% Similarity=0.026 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105 429 SPCLITYNTLIDGLAKKGC---MEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKR 496 (577)
Q Consensus 429 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 496 (577)
.|+..+--.+..++.++.+ ..+++.++++..+.+..-.....-.|.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555555555555555553 3356666666665331112334445556666777777777777666664
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.90 E-value=14 Score=41.44 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 008105 257 LITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDI----VTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNT 332 (577)
Q Consensus 257 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 332 (577)
..-|..++..+.+.+.++.+.++-........+.+. ..|..+.+.+...|++++|...+-.+..... -......
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 345666666777777777777666655543211111 2466677777777888877777777665532 3455666
Q ss_pred HHHHHHccCCHHHH
Q 008105 333 LLHSLGSRGCWDAV 346 (577)
Q Consensus 333 ll~~~~~~g~~~~a 346 (577)
++..++..|+.+..
T Consensus 977 LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 977 FVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHCCHHHH
T ss_pred HHHHHHhCCChhhh
Confidence 66666666655544
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.10 E-value=5 Score=32.85 Aligned_cols=63 Identities=8% Similarity=0.144 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRN-QIPDF-------HFCINLIRGLIRIDRIEKASKVLQIMVM 180 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 180 (577)
.++-.-++.+...|.++.|+-+.+.+.... ..|+. .++..+..++...+++.+|...|++.++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 345566888899999999999888765432 12332 2456677888899999999999998754
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.97 E-value=6.4 Score=29.04 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105 449 EKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK 495 (577)
Q Consensus 449 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 495 (577)
=+..+-++.+....+.|++....+.+.+|.+-.++.-|.++|+-+..
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555555555543
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.81 E-value=25 Score=34.46 Aligned_cols=257 Identities=14% Similarity=0.099 Sum_probs=141.2
Q ss_pred cCCHHHHHHHHHHHhhC-----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHc
Q 008105 305 QGKYDDAVLVINNLLSR-----GMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGL----CKY 375 (577)
Q Consensus 305 ~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~ 375 (577)
.|++++|++.+-.+.+. +..........++..|...++++...+.+..+...... .......+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 36788888877666542 23445667788889999999999888877766543221 222333444333 223
Q ss_pred CCHHHHH--HHHHHHHH--CC-CCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCC---HHHHHHHHHHH
Q 008105 376 GLVDRAI--NSFNQMVS--KN-CQP---DIVTYNTVLGALCKEGMLNEALQLLHLLNGS--SCSPC---LITYNTLIDGL 442 (577)
Q Consensus 376 g~~~~A~--~~~~~m~~--~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~li~~~ 442 (577)
...+... .+.+.... .| +.. .......|...+...|++.+|.+++..+... +..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3322211 11111111 01 111 1123355677788888999998888877532 21111 23566667788
Q ss_pred HhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCccHHH----HHHHHHH
Q 008105 443 AKKGCMEKAMVLYGQMME----NGISPD--DITHRTLIWGFCRADQVEEAVDLLKEIGKR-GNKMRNSA----YRLVIHG 511 (577)
Q Consensus 443 ~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~----~~~li~~ 511 (577)
...+++.+|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++... ...-+... ...++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 888888888888887642 221222 234566667777788888888888777652 11112222 2223333
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHH
Q 008105 512 LCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADD--GMTEEAYKLWQK 562 (577)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 562 (577)
..-.+....-..+.........-++...+..++++|... .+++.+.+.++.
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence 333333333334444333333334456677777777553 345555554443
No 253
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.21 E-value=4.4 Score=42.58 Aligned_cols=86 Identities=16% Similarity=0.071 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHH--CC
Q 008105 464 SPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSK---------KVDMAIQVLELMIS--SR 532 (577)
Q Consensus 464 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~--~~ 532 (577)
+-+..-|..|.....+.+++++|.+.|+..... +-+...+..|+..|...+ +.+..+.+.-++.. ..
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~w~~R 687 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDCR 687 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHHhhh
Confidence 446667888888888999999999999888764 356778888999998876 66766666655542 11
Q ss_pred --CCCCHHHHHHHHHHHHhcC
Q 008105 533 --YKPDDTVFSTIVKKVADDG 551 (577)
Q Consensus 533 --~~p~~~~~~~l~~~~~~~g 551 (577)
...+......|.+.+.+.|
T Consensus 688 wY~efs~~l~~~l~kLi~~~G 708 (754)
T 4gns_B 688 YYNYCQIFNLQLLEKLCNELG 708 (754)
T ss_dssp TTBCCCHHHHHHHHHHHHHHC
T ss_pred cccccCHHHHHHHHHHHHHhC
Confidence 1334555566666665555
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.88 E-value=7.9 Score=43.42 Aligned_cols=193 Identities=15% Similarity=0.084 Sum_probs=121.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-------------
Q 008105 120 NNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS----G------------- 182 (577)
Q Consensus 120 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g------------- 182 (577)
...++..+.+.+.++.|.++.... +.+....-.+..++...|++++|.+.|++.... +
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 345777888888888887755432 234455555667888999999999999775211 0
Q ss_pred -----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 008105 183 -----GVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPD----VITYNTILRTMFDNGKFKQAIGFWKDQLRKGC 253 (577)
Q Consensus 183 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 253 (577)
...-...|..++..+.+.|.++.+.++-....+..-+.+ ...|..+.+.+...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 011123577888899999999998887776654321222 12578889999999999999988887766533
Q ss_pred CCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCCHHHHHH-HHHHH
Q 008105 254 PPYLITYTILIEQVCKQCG------------IARAIEVLDDMAIEG--CSPDIVTYNSLVNFSCKQGKYDDAVL-VINNL 318 (577)
Q Consensus 254 ~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m 318 (577)
-......|+...|..|. .++..+++..-.+.. ....+.-|..|=..+...|++..|-. +|+.+
T Consensus 970 --r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 970 --KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp --CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 34566667776676554 344555554332211 11112335555555667777766554 44444
Q ss_pred h
Q 008105 319 L 319 (577)
Q Consensus 319 ~ 319 (577)
.
T Consensus 1048 ~ 1048 (1139)
T 4fhn_B 1048 S 1048 (1139)
T ss_dssp H
T ss_pred H
Confidence 3
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.17 E-value=27 Score=32.48 Aligned_cols=127 Identities=17% Similarity=0.070 Sum_probs=69.6
Q ss_pred HHHHHhcCCh---hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008105 124 LQNFCSRGKL---TDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKR 200 (577)
Q Consensus 124 i~~~~~~g~~---~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 200 (577)
++.-...|++ =+|.+.++.+. .-|.+.+++++|++++..-. ..+.+.
T Consensus 19 l~~~I~~G~y~~~YEAHQ~~RTi~---------------~Ry~~~k~y~eAidLL~~GA---------------~~ll~~ 68 (336)
T 3lpz_A 19 LQRRIAEGQPEEQYEAAQETRLVA---------------ARYSKQGNWAAAVDILASVS---------------QTLLRS 68 (336)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHH---------------HHHHHT
T ss_pred HHHHHhCCCCccccHHHHHHHHHH---------------HHHHhhcCHHHHHHHHHHHH---------------HHHHHC
Confidence 3455666777 56666555443 34778888888888765432 234455
Q ss_pred CChHHHHHHH----HHHhhCCCCCCHHHHHHHHHHHHhCCChH-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHH
Q 008105 201 GQIRSAIALL----DEMSVSGCEPDVITYNTILRTMFDNGKFK-QAIGFWKDQLR----KG--CPPYLITYTILIEQVCK 269 (577)
Q Consensus 201 g~~~~A~~~~----~~~~~~g~~~~~~~~~~li~~~~~~~~~~-~A~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~ 269 (577)
|+...|-++- +-+.+.++++|......++..+.....-+ +=..+.+++++ .| ..-|+.....+...|.+
T Consensus 69 ~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~ 148 (336)
T 3lpz_A 69 GQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVE 148 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc
Confidence 6655544433 44445566777766666666655443211 11112222221 11 22355666666677777
Q ss_pred cCCHHHHHHHH
Q 008105 270 QCGIARAIEVL 280 (577)
Q Consensus 270 ~g~~~~A~~~~ 280 (577)
.+++.+|..-|
T Consensus 149 e~~~~~Ae~H~ 159 (336)
T 3lpz_A 149 EGEFEAAEKHL 159 (336)
T ss_dssp TTCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 77777766655
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.57 E-value=7.4 Score=30.42 Aligned_cols=63 Identities=8% Similarity=0.122 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105 482 QVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVK 545 (577)
Q Consensus 482 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 545 (577)
+.-+..+-++.+...++.|++......+++|.+.+++..|.++|+-...+ ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34455555566666677777777777888888888888888887776642 3344555666553
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.43 E-value=11 Score=29.48 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=21.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105 451 AMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIG 494 (577)
Q Consensus 451 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 494 (577)
..+-++.+...++.|++......+.+|-+-+++.-|.++|+-+.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333444444444555555555555555555555555555444
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.76 E-value=16 Score=29.81 Aligned_cols=29 Identities=7% Similarity=-0.041 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105 536 DDTVFSTIVKKVADDGMTEEAYKLWQKLI 564 (577)
Q Consensus 536 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 564 (577)
+.+.---+..+|.+.|++++|+..++.+.
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 44555567889999999999999887653
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.52 E-value=44 Score=30.74 Aligned_cols=80 Identities=10% Similarity=-0.024 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008105 361 TVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKE---GMLNEALQLLHLLNGSSCSPCLITYNT 437 (577)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~ 437 (577)
++.....+...|.+.+++.+|...|-. +-.-|...+..++.-+.+. |...++ +...-.+
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHH
Confidence 566677777777777877777765531 1011344454444444333 332221 1122222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 008105 438 LIDGLAKKGCMEKAMVLYGQMM 459 (577)
Q Consensus 438 li~~~~~~g~~~~A~~~~~~m~ 459 (577)
++. |.-.++...|..+|+...
T Consensus 195 VL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 VFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHH-HHHTTBHHHHHHHHHHHH
T ss_pred HHH-HHHhcCHHHHHHHHHHHH
Confidence 222 345567777777777654
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.03 E-value=19 Score=26.40 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 008105 342 CWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLH 421 (577)
Q Consensus 342 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 421 (577)
..++|..+-+-+...+. ...+--+-+..+.+.|++++|..+.+... .||...|.++-. .+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45566666665555432 11122222334556666666666555442 566666655443 34566666666665
Q ss_pred HHhhCC
Q 008105 422 LLNGSS 427 (577)
Q Consensus 422 ~~~~~~ 427 (577)
.+..+|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665555
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.83 E-value=18 Score=26.49 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 008105 342 CWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLH 421 (577)
Q Consensus 342 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 421 (577)
..++|..+-+-+...+. ...+--+-+..+.+.|++++|..+.+.. ..||...|.++-. .+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555554432 1111112233445556666665554433 2555555554432 34555555555555
Q ss_pred HHhhCC
Q 008105 422 LLNGSS 427 (577)
Q Consensus 422 ~~~~~~ 427 (577)
.+..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555554
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.56 E-value=25 Score=29.75 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=45.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008105 480 ADQVEEAVDLLKEIGKRGNKM-RNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDD 537 (577)
Q Consensus 480 ~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 537 (577)
.+...++.++|..|...|+.. -...|......+...|++++|.++|+.-++.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 445778999999998876644 3556778888888999999999999998887777743
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.38 E-value=45 Score=29.78 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=71.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CccHHHHHHHHHHHHhcCCh
Q 008105 441 GLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGN--KMRNSAYRLVIHGLCKSKKV 518 (577)
Q Consensus 441 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~ 518 (577)
...+.|++++|++....-++.. +-|...-..++..+|-.|++++|.+-++...+... .|....|..+|.+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE------ 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA------ 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH------
Confidence 4456788888888877777753 44666677788888888888888888877766432 12233444444332
Q ss_pred HHHHHHHHHHHHCCCCC-----CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCC
Q 008105 519 DMAIQVLELMISSRYKP-----DDTVFSTIVKKV--ADDGMTEEAYKLWQKLIEWKV 568 (577)
Q Consensus 519 ~~A~~~~~~m~~~~~~p-----~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~ 568 (577)
..=.+...-+-.| ...-...++.++ ...|+.++|.++-.++.+.-+
T Consensus 79 ----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 79 ----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp ----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 1112222222122 233445556554 446888888888888877544
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.99 E-value=8.2 Score=34.49 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=36.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 008105 161 GLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVS 216 (577)
Q Consensus 161 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 216 (577)
.+.+.|++++|++....-++.. +-|...-..++..+|-.|++++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456667777777666666654 456666667777777777777777766666544
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.85 E-value=30 Score=33.71 Aligned_cols=97 Identities=9% Similarity=-0.154 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHH--
Q 008105 399 TYNTVLGALCKEGMLNEALQLLHLLNGSS--CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN-GISPDDITHRTL-- 473 (577)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l-- 473 (577)
+...+...|.+.|++++|.+.+.++.... ...-...+-.+++.+...+++..+...+.+.... .-.+|....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45567777777788887777777776532 2233455666677777777777777777776431 011222222211
Q ss_pred --HHHHHhcCCHHHHHHHHHHHhh
Q 008105 474 --IWGFCRADQVEEAVDLLKEIGK 495 (577)
Q Consensus 474 --i~~~~~~g~~~~A~~~~~~m~~ 495 (577)
...+...+++.+|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122345667776666666543
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.76 E-value=26 Score=25.78 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=26.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 008105 161 GLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSG 217 (577)
Q Consensus 161 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 217 (577)
.+...|+|++|..+.+... .||...|-+|-. .+.|.-+++..-+.++...|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3445566666655554442 455555554433 24455555555555555444
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.42 E-value=25 Score=25.84 Aligned_cols=50 Identities=14% Similarity=-0.003 Sum_probs=22.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 008105 162 LIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSG 217 (577)
Q Consensus 162 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 217 (577)
+...|+|++|..+.+... .||...|-+|-. .+.|.-+++..-+.++..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 334455555554443332 444444444332 24444444444444444433
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.12 E-value=26 Score=34.16 Aligned_cols=61 Identities=13% Similarity=-0.063 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 008105 154 FCINLIRGLIRIDRIEKASKVLQIMVMS--GGVPDTITYNMMVGGLCKRGQIRSAIALLDEMS 214 (577)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 214 (577)
+...+...|.+.|+++.|.+.+.++... +...-...+-..++.+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445555566666666666666665543 222233445555566666666666666665553
No 269
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.48 E-value=24 Score=34.97 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCChh--hH-HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008105 117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQ-IPDFH--FC-INLIRGLIRIDRIEKASKVLQIMVMS 181 (577)
Q Consensus 117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~~~~~--~~-~~li~~~~~~g~~~~A~~~~~~~~~~ 181 (577)
..++|.+++.|...+.++.|..+.....--.. .+|.. .| ..+.+.+.-++++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46778888888888888888888877642100 01111 11 12345556677888888877777654
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.13 E-value=47 Score=28.13 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=48.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHH
Q 008105 445 KGCMEKAMVLYGQMMENGISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNS 503 (577)
Q Consensus 445 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 503 (577)
.+...++.++|..|...|+--. ...|......+...|++++|.++|+.-.+.+-.|-..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 4457899999999998876544 6678888888999999999999999999888777543
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.06 E-value=58 Score=26.18 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 008105 485 EAVDLLKEIGKRGNKMR-NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPD 536 (577)
Q Consensus 485 ~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 536 (577)
++.++|..|...|+-.. ...|......+...|++++|.++|+.-++.+-.|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 36666666666554332 34455566666666777777777766666555553
No 272
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=60.36 E-value=1.1e+02 Score=28.43 Aligned_cols=81 Identities=7% Similarity=-0.046 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008105 360 PTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLI 439 (577)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 439 (577)
-++.....+...|.+.+++.+|..-|- . |-.+++..+..++.-+.+.+...+ ++...-.+++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH
Confidence 356666777888888888888877762 2 323344666555554444433221 1222333333
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 008105 440 DGLAKKGCMEKAMVLYGQMM 459 (577)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~ 459 (577)
. |.-.++...|..+++...
T Consensus 196 ~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 P-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp H-HHHTTCHHHHHHHHHHHH
T ss_pred H-HHHhCCHHHHHHHHHHHH
Confidence 3 445567787877766654
No 273
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=58.98 E-value=1.6e+02 Score=30.06 Aligned_cols=49 Identities=8% Similarity=-0.008 Sum_probs=27.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008105 439 IDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLL 490 (577)
Q Consensus 439 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 490 (577)
+..+...|....|...+..+.+. .+......+.......|..+.+....
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 34566778888887777776653 23333334444445556666554433
No 274
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=57.49 E-value=1.1e+02 Score=28.75 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHhhCC
Q 008105 365 YNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGM--LNEALQLLHLLNGSS 427 (577)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~ 427 (577)
.+.++.-|...++.++|...++++.... .....+...+..++-+.++ .+...+++..+...+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~-fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~g 283 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 283 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTT-CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCc-chHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 4566777788888888888888875321 1123334444445444332 344566666666655
No 275
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=57.11 E-value=86 Score=28.82 Aligned_cols=103 Identities=11% Similarity=0.039 Sum_probs=48.7
Q ss_pred HHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc---cHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008105 454 LYGQMMENGISPDD---ITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKM---RNSAYRLVIHGLCKSKKVDMAIQVLEL 527 (577)
Q Consensus 454 ~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~ 527 (577)
+.+.+.+.|..++. .-.+ .+...+..|..+....+++. .|..+ |..-.+.|. .-++.|+.+- .+.
T Consensus 221 i~~lLl~~gad~n~~d~~g~t-~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~-~A~~~g~~~i----v~~ 291 (337)
T 4g8k_A 221 ITHLLLDHGADVNVRGERGKT-PLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALL-LAVELKLKKI----AEL 291 (337)
T ss_dssp HHHHHHHTTCCTTCCCGGGCC-HHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHH-HHHHTTCHHH----HHH
T ss_pred HHHHHHHCCCCCCCcCCCCCC-HHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHH-HHHHcCCHHH----HHH
Confidence 34445566655442 2222 33444567777665555432 22222 111122232 3345666543 344
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 008105 528 MISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKG 572 (577)
Q Consensus 528 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 572 (577)
+++.|..++..+ .+....+.|+.+ +++-+++.|-.||.
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 455676666543 233334566654 45566777766653
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=56.22 E-value=29 Score=30.89 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=11.1
Q ss_pred HHHHHHHhcCChhhHHHHHH
Q 008105 122 KILQNFCSRGKLTDASKLID 141 (577)
Q Consensus 122 ~li~~~~~~g~~~~A~~l~~ 141 (577)
..+...++.|+++....+++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHH
Confidence 44555566777655544443
No 277
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=55.02 E-value=1.5e+02 Score=28.32 Aligned_cols=17 Identities=18% Similarity=-0.036 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHHcCC
Q 008105 552 MTEEAYKLWQKLIEWKV 568 (577)
Q Consensus 552 ~~~~A~~~~~~~~~~~~ 568 (577)
..++++..+-+|+..|.
T Consensus 329 s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 329 PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp CHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 57888888888887664
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.86 E-value=89 Score=25.46 Aligned_cols=57 Identities=12% Similarity=0.139 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 008105 484 EEAVDLLKEIGKRGNKMR-NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVF 540 (577)
Q Consensus 484 ~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 540 (577)
+++.++|..|...|+-.. ...|......+-..|++.+|.++|+.-++.+-.|-...-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~ 134 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQ 134 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 447778888888766443 456777777788889999999999988887777765443
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=51.75 E-value=38 Score=30.09 Aligned_cols=246 Identities=14% Similarity=0.096 Sum_probs=119.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHH
Q 008105 296 NSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSI---TYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTV---FTYNILI 369 (577)
Q Consensus 296 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li 369 (577)
++.+...++.|+.+....++ +.|..++.. .-.+.+...+..|+.+-+..++ +.|..++. ...+. +
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~-L 76 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL----RHGADPVLRKKNGATP-F 76 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCH-H
T ss_pred chHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH----HcCCCCcccCCCCCCH-H
Confidence 34566677888876555444 455444322 1123444556677776554444 44543332 22223 3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH-------------
Q 008105 370 NGLCKYGLVDRAINSFNQMVSKNCQPDI---VTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLI------------- 433 (577)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------------- 433 (577)
...+..|+.+ +++.+.+.|..++. ..++. +...+..|+.+-...+ .+.|..++..
T Consensus 77 ~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~L----l~~g~~~~~~~~~~~~~~~~~~~ 147 (285)
T 1wdy_A 77 LLAAIAGSVK----LLKLFLSKGADVNECDFYGFTA-FMEAAVYGKVKALKFL----YKRGANVNLRRKTKEDQERLRKG 147 (285)
T ss_dssp HHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHHHHHHH----HHTTCCTTCCCCCCHHHHHTTCC
T ss_pred HHHHHcCCHH----HHHHHHHcCCCCCccCcccCCH-HHHHHHhCCHHHHHHH----HHhCCCcccccccHHHHHhhccC
Confidence 3344556655 34444455544432 22223 3344566776544444 3444333321
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHH--HHH
Q 008105 434 TYNTLIDGLAKKGCMEKAMVLYGQMMEN-GISPD---DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSA--YRL 507 (577)
Q Consensus 434 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~ 507 (577)
-. ..+...+..|+.+-+..+ .+. |..++ ....+.+.. .+..|+.....++++.+.+.|..++... -.+
T Consensus 148 g~-t~L~~A~~~~~~~~v~~L----l~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t 221 (285)
T 1wdy_A 148 GA-TALMDAAEKGHVEVLKIL----LDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221 (285)
T ss_dssp CC-CHHHHHHHHTCHHHHHHH----HHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred CC-cHHHHHHHcCCHHHHHHH----HHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCc
Confidence 11 233444556776544444 333 44333 222333333 3445665555667777777776554321 123
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcc
Q 008105 508 VIHGLCKSKKVDMAIQVLELMISSRYKPDDT---VFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKGT 573 (577)
Q Consensus 508 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 573 (577)
.+...++.|+.+-+..+++. .|..++.. -.+. +....+.|..+ +++-+++.|..++..
T Consensus 222 ~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~-l~~A~~~~~~~----i~~~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 222 PLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTA-LLLAVELKLKK----IAELLCKRGASTDCG 282 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHHSSCSCCS
T ss_pred HHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcH-HHHHHHcCcHH----HHHHHHHcCCCCCcc
Confidence 44555667777655444442 35544422 2223 33444556654 445566777776653
No 280
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.44 E-value=79 Score=27.07 Aligned_cols=85 Identities=16% Similarity=0.211 Sum_probs=38.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHh
Q 008105 124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHF--CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTIT--YNMMVGGLCK 199 (577)
Q Consensus 124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~ 199 (577)
+...++.|+.+....+++.+.+.+..++... -.+.+...+..|+.+ +++.+.+.|..++... -...+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 3445566777777777766655554433221 112233344455544 3333344443332211 1122333445
Q ss_pred cCChHHHHHHHHH
Q 008105 200 RGQIRSAIALLDE 212 (577)
Q Consensus 200 ~g~~~~A~~~~~~ 212 (577)
.|+.+-...+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 5555544444443
No 281
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=48.00 E-value=1.2e+02 Score=26.37 Aligned_cols=90 Identities=12% Similarity=-0.020 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--CCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q 008105 437 TLIDGLAKKGCMEKAMVLYGQMME--NGISP----DDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIH 510 (577)
Q Consensus 437 ~li~~~~~~g~~~~A~~~~~~m~~--~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 510 (577)
--++.+....++++|.+++++..+ .++++ +.......+..-.....-.-+..+.+++.. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 346777788888888888887654 12221 111111222222222222223333333422 334455556667
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 008105 511 GLCKSKKVDMAIQVLELMI 529 (577)
Q Consensus 511 ~~~~~g~~~~A~~~~~~m~ 529 (577)
.+.+.|+.++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 7777777777777776664
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=47.34 E-value=1.1e+02 Score=24.56 Aligned_cols=50 Identities=8% Similarity=0.004 Sum_probs=25.2
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 008105 451 AMVLYGQMMENGISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKM 500 (577)
Q Consensus 451 A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 500 (577)
+.++|..|...|+--. +..|......+...|++++|.++|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555555555443322 3344455555555555555555555555544444
No 283
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=44.74 E-value=2e+02 Score=26.92 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008105 470 HRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKK--VDMAIQVLELMISSRYKPDDTVFSTIVKKV 547 (577)
Q Consensus 470 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 547 (577)
...++.-|...|+.++|.+.++++...... .......+..++-+.++ .+...+++..+.+.|+-+.......+.+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 567778888888999998888888532221 22334445555554433 345777777777767665555544444443
No 284
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=44.51 E-value=2.7e+02 Score=28.39 Aligned_cols=52 Identities=17% Similarity=-0.064 Sum_probs=26.2
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105 407 LCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMM 459 (577)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 459 (577)
..+.|+++.|...|..|..... ....-.-=+..++...|+.++|..+|+.+.
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3345666666666666544221 112222233445555666666666666654
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.68 E-value=1.5e+02 Score=25.82 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHH
Q 008105 221 DVITYNTILRTMFDNGKFKQAIGFWKD 247 (577)
Q Consensus 221 ~~~~~~~li~~~~~~~~~~~A~~~~~~ 247 (577)
+.......+..+.+.|+.++|.++|-+
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 344444455555555665555555544
No 286
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.43 E-value=56 Score=28.17 Aligned_cols=54 Identities=15% Similarity=0.034 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008105 484 EEAVDLLKEIGKRGNKMR-NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDD 537 (577)
Q Consensus 484 ~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 537 (577)
+++.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 577888998888776543 456777888888899999999999988877767743
No 287
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=39.42 E-value=2.3e+02 Score=26.02 Aligned_cols=95 Identities=5% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHhh------CCCCccHHHHHHHHHHHH---------------hcCChHHHHHHHHHHHHCCCCC
Q 008105 477 FCRADQVEEAVDLLKEIGK------RGNKMRNSAYRLVIHGLC---------------KSKKVDMAIQVLELMISSRYKP 535 (577)
Q Consensus 477 ~~~~g~~~~A~~~~~~m~~------~~~~~~~~~~~~li~~~~---------------~~g~~~~A~~~~~~m~~~~~~p 535 (577)
+...|++++|++.|+.+.. .+-+-+..-...++..|. ...+..+..++---+..-.++|
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYFT~c~LQp 203 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYFTKAKLSP 203 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGGGSCCCH
T ss_pred HHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhccCCCcH
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008105 536 D--DTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEK 571 (577)
Q Consensus 536 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 571 (577)
. .-+...-+....+.+++..|..+.+++++.++.++
T Consensus 204 ~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 204 IHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.13 E-value=1.6e+02 Score=24.01 Aligned_cols=54 Identities=9% Similarity=0.091 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHH
Q 008105 450 KAMVLYGQMMENGISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNS 503 (577)
Q Consensus 450 ~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 503 (577)
.+.++|..|...|+--. +..|......+...|++.+|.++|+.-.+.+-.|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 47778999988876544 5567788888888999999999999988887777654
No 289
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=38.76 E-value=1.7e+02 Score=24.37 Aligned_cols=17 Identities=12% Similarity=0.057 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHHcCC
Q 008105 361 TVFTYNILINGLCKYGL 377 (577)
Q Consensus 361 ~~~~~~~li~~~~~~g~ 377 (577)
+..+-...+.++.+.+.
T Consensus 156 ~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 156 DGWVRQSAADALGEIGG 172 (211)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333444444444443
No 290
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.51 E-value=52 Score=28.20 Aligned_cols=6 Identities=17% Similarity=0.157 Sum_probs=2.4
Q ss_pred hcCChh
Q 008105 129 SRGKLT 134 (577)
Q Consensus 129 ~~g~~~ 134 (577)
+.|+++
T Consensus 18 ~~g~~~ 23 (240)
T 3eu9_A 18 QYGIYE 23 (240)
T ss_dssp HTTCHH
T ss_pred HcCChH
Confidence 344433
No 291
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=37.77 E-value=2.7e+02 Score=26.45 Aligned_cols=92 Identities=9% Similarity=0.037 Sum_probs=46.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHhhHHH--
Q 008105 227 TILRTMFDNGKFKQAIGFWKDQLRKGCPPY-----LITYTILIEQVCKQCGIARAIEVLDDMAIE--GCSPDIVTYNS-- 297 (577)
Q Consensus 227 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~-- 297 (577)
-++..|...|++.+|.+++.++.+.=-..| ...+..-+..|...+++.++...+...... .+.+++..-..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 356666677777777666666655211111 123344455566667777766666655432 11122221111
Q ss_pred --HHHHHH-hcCCHHHHHHHHHHH
Q 008105 298 --LVNFSC-KQGKYDDAVLVINNL 318 (577)
Q Consensus 298 --li~~~~-~~g~~~~A~~~~~~m 318 (577)
-...+. ..+++..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 112234 566666666665544
No 292
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.29 E-value=3.6e+02 Score=29.34 Aligned_cols=131 Identities=11% Similarity=0.068 Sum_probs=66.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 008105 158 LIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGK 237 (577)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 237 (577)
++..|...|.++-|.++...+ +.++..--.+..+|...|++++|...|++.. .|+..+..... .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~----------~ 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA----------V 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCG----------G
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCccccc----------c
Confidence 556666677776665544333 3344433445667778888888888887654 22211110000 0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcC
Q 008105 238 FKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDI----VTYNSLVNFSCKQG 306 (577)
Q Consensus 238 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g 306 (577)
......++... ........-|..++..+-+.+.++.+.++-+.....--.-|. ..|+.+.++.+..|
T Consensus 880 ~~~~~~ll~~~--e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEKY--HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHHT--TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCcc--cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00001111100 000112235677777777888888887777776653212222 35666666665443
No 293
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=33.99 E-value=1.1e+02 Score=25.22 Aligned_cols=29 Identities=17% Similarity=0.080 Sum_probs=14.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 008105 228 ILRTMFDNGKFKQAIGFWKDQLRKGCPPY 256 (577)
Q Consensus 228 li~~~~~~~~~~~A~~~~~~~~~~~~~~~ 256 (577)
.+...+..|+.+.-.++.+.+++.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 33344445555544555555555554443
No 294
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=33.86 E-value=1.3e+02 Score=26.96 Aligned_cols=142 Identities=9% Similarity=0.002 Sum_probs=60.3
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCC
Q 008105 125 QNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTIT--YNMMVGGLCKRGQ 202 (577)
Q Consensus 125 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~ 202 (577)
...+..|+.+-+..+++ .|..++..--.+.+...+..|+.+-+.. +.+.|..++... -.+.+...+..|+
T Consensus 36 ~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t~L~~A~~~g~ 107 (285)
T 3kea_A 36 YYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNTALYYAVDSGN 107 (285)
T ss_dssp HHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCcHHHHHHHcCC
Confidence 33445666655554444 3433332212233444455666554433 334454433211 1123344456666
Q ss_pred hHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 008105 203 IRSAIALLDEMSVSGCEPDV---ITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPP-YLITYTILIEQVCKQCGIARAIE 278 (577)
Q Consensus 203 ~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 278 (577)
.+-+.-+++. |..++. .-+.+.+...+..|+.+-+ +.+++.|..+ +...-.+.+...+..|+.+-+.-
T Consensus 108 ~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~ 179 (285)
T 3kea_A 108 MQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMIL 179 (285)
T ss_dssp HHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHH
Confidence 6554444443 322221 1112334444455554433 3334444322 11122333444556666665555
Q ss_pred HHHH
Q 008105 279 VLDD 282 (577)
Q Consensus 279 ~~~~ 282 (577)
+++.
T Consensus 180 Ll~~ 183 (285)
T 3kea_A 180 LLDY 183 (285)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5544
No 295
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.52 E-value=1.9e+02 Score=23.39 Aligned_cols=51 Identities=6% Similarity=0.007 Sum_probs=27.8
Q ss_pred hcCCHHHHHHHHHHHhhCCCCc--cHHHHHHHHH-H-----HHhcCChHHHHHHHHHHH
Q 008105 479 RADQVEEAVDLLKEIGKRGNKM--RNSAYRLVIH-G-----LCKSKKVDMAIQVLELMI 529 (577)
Q Consensus 479 ~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~ 529 (577)
+.|++-+|.++|+..=.....+ ....|..||. . ..+.|+...|..++.+..
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3466666666666665433333 3445555555 2 124566666666666554
No 296
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=32.83 E-value=40 Score=21.94 Aligned_cols=32 Identities=25% Similarity=0.203 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHH-Hhc
Q 008105 134 TDASKLIDIMARRNQIPDFHFCINLIRGL-IRI 165 (577)
Q Consensus 134 ~~A~~l~~~~~~~~~~~~~~~~~~li~~~-~~~ 165 (577)
++|...|-+|++..-.++..+|...++.+ ++.
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 56677777776665555666677766666 443
No 297
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.83 E-value=3.7e+02 Score=29.16 Aligned_cols=87 Identities=16% Similarity=0.082 Sum_probs=49.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------------------
Q 008105 438 LIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNK------------------ 499 (577)
Q Consensus 438 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------------------ 499 (577)
++..+...|.++-|.++..- .+.++..--.+..+|...|++++|.+.|++... |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 55556666666655443221 223443334456667777888888888876532 111
Q ss_pred -----ccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105 500 -----MRNSAYRLVIHGLCKSKKVDMAIQVLELMIS 530 (577)
Q Consensus 500 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 530 (577)
.....|..++..+-+.+-++-+.++.+.+++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 0112456666666677777777777766665
No 298
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=31.67 E-value=2.3e+02 Score=23.83 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=21.5
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC
Q 008105 304 KQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRG 341 (577)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 341 (577)
+-.+.+.|+-++-+|++.| .|....-..++-+....|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3456677777777777776 554444444444444444
No 299
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=31.12 E-value=4.6e+02 Score=27.02 Aligned_cols=80 Identities=13% Similarity=0.049 Sum_probs=39.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---
Q 008105 298 LVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCK--- 374 (577)
Q Consensus 298 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 374 (577)
....+.-.|+++.|.+.+-.. ...+.+.+...+..|.-.+ ....++. .........+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~---~~~~lls----~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFK---IDSSTRL----TKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCcc---CCCcccc----cCCCcccccHHHHHHHHHHHhh
Confidence 445566788888888877644 1334444444444332222 1111111 1000113346777777775
Q ss_pred cCCHHHHHHHHHHH
Q 008105 375 YGLVDRAINSFNQM 388 (577)
Q Consensus 375 ~g~~~~A~~~~~~m 388 (577)
..++.+|++.|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 46788888877666
No 300
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.48 E-value=1.4e+02 Score=26.71 Aligned_cols=16 Identities=25% Similarity=0.142 Sum_probs=7.1
Q ss_pred HHHccCCHHHHHHHHH
Q 008105 336 SLGSRGCWDAVDKILD 351 (577)
Q Consensus 336 ~~~~~g~~~~a~~~~~ 351 (577)
..+..|+.+-+..+++
T Consensus 167 ~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 167 ITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHH
Confidence 3344455544444443
No 301
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=29.87 E-value=17 Score=32.20 Aligned_cols=15 Identities=13% Similarity=0.115 Sum_probs=6.4
Q ss_pred HHcCCHHHHHHHHHH
Q 008105 373 CKYGLVDRAINSFNQ 387 (577)
Q Consensus 373 ~~~g~~~~A~~~~~~ 387 (577)
++.|+.+-+..++++
T Consensus 233 ~~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 233 AKTGKIGIFQHIIRR 247 (260)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHh
Confidence 334444444444433
No 302
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=29.70 E-value=1.6e+02 Score=21.40 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=16.0
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHHHHhcC
Q 008105 486 AVDLLKEIGKRGNKMRNSAYRLVIHGLCKSK 516 (577)
Q Consensus 486 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 516 (577)
|.++.++....|+.|+......++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3444444444555555555555555555444
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.06 E-value=1.7e+02 Score=25.26 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 008105 450 KAMVLYGQMMENGISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKM 500 (577)
Q Consensus 450 ~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 500 (577)
.+.++|..|...|+--. ...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34455555555444322 3344455555555555555555555555544444
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.86 E-value=2.2e+02 Score=22.70 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCC
Q 008105 434 TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQ--VEEAVDLLKEIGKRGNK 499 (577)
Q Consensus 434 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 499 (577)
..+.++.-|...|+.++|...++++....+ -.......+..++-+.++ .+.+..++..+...++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 356677778888888888888887742100 012233334444444322 34566666666655543
No 305
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.29 E-value=2.8e+02 Score=23.32 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=19.8
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105 304 KQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLG 338 (577)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 338 (577)
+-.+.+.|+-++-+|++.|-.|....-..++-+..
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsE 53 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASE 53 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34566667777777776665554444444444433
No 306
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=26.76 E-value=6.3e+02 Score=27.23 Aligned_cols=167 Identities=7% Similarity=-0.030 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105 156 INLIRGLIRIDR---IEKASKVLQIMVMS--GGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR 230 (577)
Q Consensus 156 ~~li~~~~~~g~---~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 230 (577)
..++...|+.|. .++|.+.|+..... +.+.++..-..+...-.+.|..++-..+++.... ..+..--..++.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~---~~~~~ek~~ll~ 766 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQ---AQLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHH---CCSHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHc---cCCHHHHHHHHH
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---HHHcCCCCCHhhHHHHHHHHHhcCC
Q 008105 231 TMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDD---MAIEGCSPDIVTYNSLVNFSCKQGK 307 (577)
Q Consensus 231 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~li~~~~~~g~ 307 (577)
+++...+.....++++..+....-........+..........+.|.+.+.+ ............+..++......-.
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~ 846 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFS 846 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCC
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Q ss_pred HHHHHHHHHHHhhCCCCC
Q 008105 308 YDDAVLVINNLLSRGMEP 325 (577)
Q Consensus 308 ~~~A~~~~~~m~~~g~~p 325 (577)
-++-.+-++...+.....
T Consensus 847 t~~~~~~~~~f~~~~~~~ 864 (909)
T 4fke_A 847 SEFELQQLEQFKKNNMDV 864 (909)
T ss_dssp SHHHHHHHHHHHTTCSSS
T ss_pred CHHHHHHHHHHHhhCCcc
No 307
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=26.62 E-value=2.6e+02 Score=26.56 Aligned_cols=201 Identities=18% Similarity=0.165 Sum_probs=89.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHH
Q 008105 158 LIRGLIRIDRIEKASKVLQIMVMSGGVPDTIT--YNMMVGGLCKRGQIRSAIALLDEMSVSGCEPD---VITYNTILRTM 232 (577)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~ 232 (577)
.+...+..|+.+-...+ .+.|..++... ..+.+...++.|+.+-+.-+++. |..++ ..-. +.+...
T Consensus 17 ~L~~Aa~~g~~~~v~~L----l~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~-t~L~~A 87 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN----KAKVNAKAKDDQ-TPLHCA 87 (437)
T ss_dssp HHHHHHHHTCHHHHHHH----HHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH----TCCSSCCCTTSC-CHHHHH
T ss_pred HHHHHHHCCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCC-CHHHHH
Confidence 44455667776644444 44455554321 22345556677877665555543 32222 1112 233444
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCC
Q 008105 233 FDNGKFKQAIGFWKDQLRKGCPPYLIT--YTILIEQVCKQCGIARAIEVLDDMAIEGCSPD---IVTYNSLVNFSCKQGK 307 (577)
Q Consensus 233 ~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~ 307 (577)
+..|+.+-+ +.+++.|..++... -.+.+...++.|+.+-+..+++. +..++ ...+ +.+...+..|+
T Consensus 88 ~~~g~~~~v----~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~g~-t~L~~A~~~g~ 158 (437)
T 1n11_A 88 ARIGHTNMV----KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK----EASQACMTKKGF-TPLHVAAKYGK 158 (437)
T ss_dssp HHHTCHHHH----HHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT----TCCSCCCCTTSC-CHHHHHHHTTC
T ss_pred HHCCCHHHH----HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC----CCCCcCCCCCCC-CHHHHHHHcCC
Confidence 456665543 33444454433211 11233445666777655555433 32221 1112 23444556676
Q ss_pred HHHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHH
Q 008105 308 YDDAVLVINNLLSRGMEPNSIT--YNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVF---TYNILINGLCKYGLVDRAI 382 (577)
Q Consensus 308 ~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~ 382 (577)
.+-+ +.+.+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++.. .++ .+...+..|+.+-+.
T Consensus 159 ~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~ 229 (437)
T 1n11_A 159 VRVA----ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV----KLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVAR 229 (437)
T ss_dssp HHHH----HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHH----HHHGGGTCCSCCCCTTCCC-HHHHHHHTTCHHHHH
T ss_pred HHHH----HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCCCCcCCCCCC-HHHHHHHcCCHHHHH
Confidence 6544 33444554443221 11223334455665443 3344444333221 122 233445566655444
Q ss_pred HHH
Q 008105 383 NSF 385 (577)
Q Consensus 383 ~~~ 385 (577)
.++
T Consensus 230 ~Ll 232 (437)
T 1n11_A 230 SLL 232 (437)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 308
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.58 E-value=2.9e+02 Score=25.56 Aligned_cols=22 Identities=9% Similarity=0.301 Sum_probs=10.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 008105 192 MMVGGLCKRGQIRSAIALLDEM 213 (577)
Q Consensus 192 ~li~~~~~~g~~~~A~~~~~~~ 213 (577)
.++.-|...|+.++|...++++
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHc
Confidence 3444444445555554444444
No 309
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.40 E-value=2.3e+02 Score=22.25 Aligned_cols=45 Identities=16% Similarity=0.050 Sum_probs=21.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 008105 193 MVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGK 237 (577)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 237 (577)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 334444444445555555555544433444444444455544443
No 310
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.86 E-value=38 Score=29.83 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=8.0
Q ss_pred HhcCChHHHHHHHHHH
Q 008105 513 CKSKKVDMAIQVLELM 528 (577)
Q Consensus 513 ~~~g~~~~A~~~~~~m 528 (577)
++.|+.+-+..++++-
T Consensus 233 ~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 233 AKTGKIGIFQHIIRRE 248 (260)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhC
Confidence 4455555555555444
No 311
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=25.54 E-value=3e+02 Score=23.13 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=10.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcC
Q 008105 267 VCKQCGIARAIEVLDDMAIEG 287 (577)
Q Consensus 267 ~~~~g~~~~A~~~~~~~~~~~ 287 (577)
.++.|+.+....+++.+...|
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 344555555555554444443
No 312
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.43 E-value=1.5e+02 Score=24.22 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=5.4
Q ss_pred HHcCCHHHHHHHH
Q 008105 268 CKQCGIARAIEVL 280 (577)
Q Consensus 268 ~~~g~~~~A~~~~ 280 (577)
+..|+.+....++
T Consensus 13 ~~~g~~~~v~~ll 25 (201)
T 3hra_A 13 ANQRDTKKVKEIL 25 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhccHHHHHHHH
Confidence 3344444444333
No 313
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.38 E-value=2.3e+02 Score=21.76 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105 435 YNTLIDGLAKKGCMEKAMVLYGQMM 459 (577)
Q Consensus 435 ~~~li~~~~~~g~~~~A~~~~~~m~ 459 (577)
...++.-|...|+.++|.+.++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4556666666777777777776664
No 314
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.09 E-value=4.7e+02 Score=25.25 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008105 376 GLVDRAINSFNQMVSKNCQPDIVTYNTVLGAL 407 (577)
Q Consensus 376 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 407 (577)
++.+.|+..+.+|.+.|..|....-..+..+.
T Consensus 269 sd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ 300 (447)
T 3pvs_A 269 SAPDAALYWYARIITAGGDPLYVARRCLAIAS 300 (447)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45555555555555554444333333333333
No 315
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.08 E-value=2.7e+02 Score=22.48 Aligned_cols=52 Identities=4% Similarity=0.096 Sum_probs=31.2
Q ss_pred hcCChhhHHHHHHHHHHcCCCC--ChhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 008105 129 SRGKLTDASKLIDIMARRNQIP--DFHFCINLIR-G-----LIRIDRIEKASKVLQIMVM 180 (577)
Q Consensus 129 ~~g~~~~A~~l~~~~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~~~~ 180 (577)
..|++-+|-++++..-.....+ +...|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3478888888887777664444 4444555555 1 1245666666666666544
No 316
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=24.45 E-value=1.1e+02 Score=20.43 Aligned_cols=44 Identities=23% Similarity=0.236 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 008105 120 NNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIR 164 (577)
Q Consensus 120 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~ 164 (577)
++-++..+++..-.++++-.++++.++|.. +...|..-++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~I-~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGTI-PLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 455556666666666666666666666533 45555555555444
No 317
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=24.24 E-value=2.1e+02 Score=23.49 Aligned_cols=29 Identities=3% Similarity=0.016 Sum_probs=15.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCC
Q 008105 193 MVGGLCKRGQIRSAIALLDEMSVSGCEPD 221 (577)
Q Consensus 193 li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 221 (577)
.+...+..|..+.-.++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 34444555655555555666666665444
No 318
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.16 E-value=3.2e+02 Score=22.99 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=16.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105 165 IDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL 197 (577)
Q Consensus 165 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 197 (577)
..+.+.|+-++-+|++.| .|.-..-..++-+.
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~As 58 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGY 58 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 356666666666666666 44433333333333
No 319
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.60 E-value=1.7e+02 Score=23.57 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhCC
Q 008105 191 NMMVGGLCKRGQIRSAIALLDEMSVS--GCEPDVITYNTILRTMFDNG 236 (577)
Q Consensus 191 ~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~~ 236 (577)
..+++.+...+..-.|.++++.+.+. +...+..|.-.-+..+.+.|
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 33444454555555566666655544 33334444333344444443
No 320
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.28 E-value=3.5e+02 Score=23.01 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105 298 LVNFSCKQ---GKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGC-----WDAVDKILDIMNEASHSPTVFTYNILI 369 (577)
Q Consensus 298 li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~~~~li 369 (577)
+|+++.|+ .+.+.|+-++-+|++.|-.|....-..++-+.-..|. ...|...++.....|.+--.......+
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 117 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQAS 117 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 008105 370 NGLCKYGLVDRAINSFNQMVS 390 (577)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~ 390 (577)
-.++..-+...+ ..++...+
T Consensus 118 iyLA~APKSNs~-~A~~~A~~ 137 (213)
T 3ctd_A 118 LYLAISPKSNST-KSIFKAME 137 (213)
T ss_dssp HHHHHSCCCCGG-GHHHHHHH
T ss_pred HHHHcCCccHHH-HHHHHHHH
No 321
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=23.11 E-value=5.2e+02 Score=24.98 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=13.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHH
Q 008105 305 QGKYDDAVLVINNLLSRGMEPNSI 328 (577)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~~ 328 (577)
.++.+.|+.++.+|.+.|..|...
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i 291 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYV 291 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHH
Confidence 456666666666666665544433
No 322
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.96 E-value=2.2e+02 Score=21.95 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=13.5
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105 202 QIRSAIALLDEMSVSGCEPDVITYNTILRTMFD 234 (577)
Q Consensus 202 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 234 (577)
..-.|.++++.+.+.+...+..|...-+..+.+
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 65 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEA 65 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 334444444444444333333333333344433
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.80 E-value=2.8e+02 Score=21.73 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcC
Q 008105 483 VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSK 516 (577)
Q Consensus 483 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 516 (577)
.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 37 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 37 HPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3344444444444433333333333334444443
No 324
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=22.45 E-value=1.8e+02 Score=24.54 Aligned_cols=7 Identities=0% Similarity=0.126 Sum_probs=2.9
Q ss_pred HHhcCCH
Q 008105 302 SCKQGKY 308 (577)
Q Consensus 302 ~~~~g~~ 308 (577)
.+..|+.
T Consensus 49 A~~~~~~ 55 (240)
T 3eu9_A 49 AAINNRI 55 (240)
T ss_dssp HHHTTCH
T ss_pred HHHhCCH
Confidence 3344443
No 325
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=22.41 E-value=2.5e+02 Score=21.11 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 008105 448 MEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK-RGNKMRNSAYRLVIHGLCKSKKVDMAIQVLE 526 (577)
Q Consensus 448 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 526 (577)
+.+|..-+++..+. ++|......++..+... ++.|+++.+...+ .|+ .+.++...+....+.|-.++. +.|.
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w~ 76 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFWL 76 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHHH
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHHH
Confidence 44455555554432 33444444444443322 3444444444332 343 234455555555555555444 3444
Q ss_pred HHH
Q 008105 527 LMI 529 (577)
Q Consensus 527 ~m~ 529 (577)
.|.
T Consensus 77 ~m~ 79 (119)
T 1wty_A 77 EML 79 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 326
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=22.35 E-value=1.4e+02 Score=19.93 Aligned_cols=44 Identities=14% Similarity=0.032 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008105 155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK 199 (577)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 199 (577)
++.++..+++..-.++++..+++..+.| ..+...|---++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4556666666666677777777777666 4555555555555444
No 327
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.12 E-value=2.9e+02 Score=21.77 Aligned_cols=67 Identities=7% Similarity=-0.031 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008105 134 TDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRG 201 (577)
Q Consensus 134 ~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 201 (577)
.....+-+.+.+.|.. ....-..++..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 9 ~~~~~~~~~l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 9 SILERLRMSIKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHHHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
No 328
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.05 E-value=4.5e+02 Score=23.89 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008105 470 HRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKK--VDMAIQVLELMISSRYKPDDTVFSTI 543 (577)
Q Consensus 470 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l 543 (577)
...++.-|...|+.++|.+.++++...... .......+..++-+.++ .+...+++..+.+.|+-+.......+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 456777788889999999988888531111 12233344444444332 34566777777765655544443333
No 329
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=21.89 E-value=1.7e+02 Score=28.59 Aligned_cols=62 Identities=11% Similarity=0.032 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh--------hHHH-HHHHHHhcCCHHHHHHHHHHHH
Q 008105 118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFH--------FCIN-LIRGLIRIDRIEKASKVLQIMV 179 (577)
Q Consensus 118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~--------~~~~-li~~~~~~g~~~~A~~~~~~~~ 179 (577)
...|.|.+.|.+.|++..+..++..+...+..|+.. +|.- +.+.+...+++.+|.+-+.+..
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~ 247 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAF 247 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHH
Confidence 345677777777777777777777776655433222 2222 3344445566666655555544
No 330
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.88 E-value=3.4e+02 Score=22.40 Aligned_cols=49 Identities=14% Similarity=0.054 Sum_probs=21.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008105 150 PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQ 202 (577)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 202 (577)
++...-...+..+.+.+.. .+...+..+.. .++...-...+.++.+.|.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCC
Confidence 3555555555555555542 22333333332 2344444444455555444
No 331
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.51 E-value=3.6e+02 Score=22.62 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105 165 IDRIEKASKVLQIMVMSGGVPDTITYNMMVGG 196 (577)
Q Consensus 165 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 196 (577)
..+.+.|+-++-+|++.|-.|.-..-..++-+
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35666667667777666644443333333333
No 332
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.86 E-value=2.2e+02 Score=22.39 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 008105 203 IRSAIALLDEMSVSGCEPDVITYNTILRTMFDN 235 (577)
Q Consensus 203 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 235 (577)
.-.|.++++.+.+.+...+..|...-+..+...
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 334444444444443333333333333444333
No 333
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=20.83 E-value=2.7e+02 Score=23.33 Aligned_cols=20 Identities=30% Similarity=0.054 Sum_probs=8.5
Q ss_pred HhcCCHHHHHHHHHHHhhCC
Q 008105 303 CKQGKYDDAVLVINNLLSRG 322 (577)
Q Consensus 303 ~~~g~~~~A~~~~~~m~~~g 322 (577)
+..|+.+-+..+++.+.+.|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhcC
Confidence 34444444444444444443
No 334
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.75 E-value=1.8e+02 Score=22.39 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=24.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 008105 122 KILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRID 166 (577)
Q Consensus 122 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g 166 (577)
.+++.+...+..-.|.++++.+.+.+...+..|-...+..+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344555555555666666666666554444444444444444444
No 335
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.57 E-value=5e+02 Score=23.88 Aligned_cols=25 Identities=12% Similarity=0.352 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHH
Q 008105 120 NNKILQNFCSRGKLTDASKLIDIMA 144 (577)
Q Consensus 120 ~~~li~~~~~~g~~~~A~~l~~~~~ 144 (577)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4678899999999999999888874
No 336
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.27 E-value=6.1e+02 Score=24.73 Aligned_cols=134 Identities=13% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 008105 175 LQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCP 254 (577)
Q Consensus 175 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 254 (577)
+.-..+.|++--...|..-.+.+...|++++|.++-...+ .|+-.+..|.+.+-..=...|...-.+.+|..+++.| .
T Consensus 349 ~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP-~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~ 426 (494)
T 1bpo_A 349 LRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP-KGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-Q 426 (494)
T ss_dssp HHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG-GGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-C
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc-cccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-c
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105 255 PYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNL 318 (577)
Q Consensus 255 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 318 (577)
.+..----+++.-...|+.+-..+.+.+ +..+.+-=+.-..+..+..-|+.+|.+.
T Consensus 427 Ln~~ESlEl~r~vL~q~r~~llekWl~e--------~KL~~SEeLGDlvk~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 427 LNKYESLELCRPVLQQGRKQLLEKWLKE--------DKLECSEELGDLVKSVDPTLALSVYLRA 482 (494)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHH--------TCSCCCHHHHHHHHHHCSHHHHHHHHHH
T ss_pred cchHHhhHHhHHHHhccHHHHHHHHHhc--------CCccccHHhHhhhhhcCHHHHHHHHHHc
No 337
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.10 E-value=3.3e+02 Score=24.64 Aligned_cols=10 Identities=0% Similarity=0.029 Sum_probs=4.3
Q ss_pred HhcCChHHHH
Q 008105 198 CKRGQIRSAI 207 (577)
Q Consensus 198 ~~~g~~~~A~ 207 (577)
++.|+++-+.
T Consensus 33 v~~g~~~~V~ 42 (337)
T 4g8k_A 33 VQNEDVDLVQ 42 (337)
T ss_dssp HHTTCHHHHH
T ss_pred HHcCCHHHHH
Confidence 3444444333
No 338
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.01 E-value=3.3e+02 Score=21.62 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHh
Q 008105 191 NMMVGGLCKRGQIRSAIALLDEMS 214 (577)
Q Consensus 191 ~~li~~~~~~g~~~~A~~~~~~~~ 214 (577)
+.++.-|...|+.++|...++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 445555666666666666666664
Done!