Query 008106
Match_columns 577
No_of_seqs 181 out of 2046
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 18:15:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 3.7E-30 1.3E-34 278.3 29.8 441 26-572 9-477 (491)
2 2xut_A Proton/peptide symporte 100.0 7.2E-30 2.5E-34 278.6 25.7 474 28-573 10-509 (524)
3 1pw4_A Glycerol-3-phosphate tr 99.9 4.4E-26 1.5E-30 242.9 25.5 403 29-569 27-436 (451)
4 3o7q_A L-fucose-proton symport 99.9 6.3E-25 2.1E-29 233.2 29.9 352 28-524 24-406 (438)
5 4gc0_A D-xylose-proton symport 99.9 7.5E-24 2.5E-28 228.7 23.2 410 66-576 55-472 (491)
6 2gfp_A EMRD, multidrug resista 99.9 3.5E-23 1.2E-27 215.6 15.0 167 33-232 3-169 (375)
7 2cfq_A Lactose permease; trans 99.9 1.1E-22 3.6E-27 215.9 9.6 392 30-573 7-406 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 3.1E-13 1.1E-17 143.3 14.7 179 29-237 251-433 (451)
9 3o7q_A L-fucose-proton symport 99.4 2.6E-12 8.8E-17 135.7 17.1 170 29-233 257-428 (438)
10 2cfq_A Lactose permease; trans 99.3 9.6E-12 3.3E-16 131.4 12.6 178 30-239 220-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 4.4E-11 1.5E-15 128.5 12.0 187 32-242 285-476 (491)
12 4gc0_A D-xylose-proton symport 99.1 1.1E-09 3.7E-14 117.5 14.7 185 32-243 278-468 (491)
13 2gfp_A EMRD, multidrug resista 98.9 3.3E-10 1.1E-14 117.2 2.6 163 30-225 199-364 (375)
14 2xut_A Proton/peptide symporte 98.2 1E-06 3.4E-11 95.2 4.8 150 68-240 337-505 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=3.7e-30 Score=278.35 Aligned_cols=441 Identities=18% Similarity=0.287 Sum_probs=299.9
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCCCchhhhhHHHHHHHHHHHHHhHHHHhhhc-ccchhHH
Q 008106 26 HGGMLAACFVLAVEVLENLAYLANASNLVLYLSKF-----MHFSPSSSANIVTNFMGTAFLLALFGGFLADA-FFTTYRI 99 (577)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~-~~Grr~~ 99 (577)
++++|.++.+.+..++.++.+|++..+++.|++++ +|.+..+.+++.+.+.++..++++++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 44567889999999999999999999999999988 99999999999999999999999999999999 7 99999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccc
Q 008106 100 YVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQ 179 (577)
Q Consensus 100 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 179 (577)
+.++.++.+++.+++++++ +.+.++++|+++|++.|...+...+++.|++|+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 142 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPF-------------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR 142 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCC-------------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT
T ss_pred HHHHHHHHHHHHHHHHHhh-------------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc
Confidence 9999999999999988765 566799999999999999999999999999998661
Q ss_pred hhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCcccccc---CCCC-CchhHHH
Q 008106 180 LGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNK---IPTG-SPLTTIF 255 (577)
Q Consensus 180 ~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~ 255 (577)
+|+.++++++...++|..++|.+++++.+..||++.|++.++..+++++++++..++..++ ++++ ....+..
T Consensus 143 ----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
T 4aps_A 143 ----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVK 218 (491)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHH
T ss_pred ----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhH
Confidence 2667788899999999999999999999999999999998777666655554433222111 1111 1111111
Q ss_pred HHHHH-------------HHHhhccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHH---Hhhc-
Q 008106 256 KVLTA-------------AIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNR---ALRN- 318 (577)
Q Consensus 256 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~- 318 (577)
+.... .....+ .. +..+....... ....
T Consensus 219 ~~~~~~g~~l~~~~~~~~~~~~~~--~~---------------------------------~~~~~~~~~~~~~~~~~~~ 263 (491)
T 4aps_A 219 PLLVKVSLAVAGFIAIIVVMNLVG--WN---------------------------------SLPAYINLLTIVAIAIPVF 263 (491)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHHS--SC---------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--Cc---------------------------------ccccchhhhhHHHHHHHHH
Confidence 11000 000000 00 00000000000 0000
Q ss_pred CCCCCccccchhhhhHHHHHHhHHHHHHHhHHHHhhhhccchhHHhhhhh-ccccCCccccCCCCCCCcChhhhHHHhhh
Q 008106 319 NPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAAT-MNTKLGSLKVPPASLPVFPVIFILILAPV 397 (577)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 397 (577)
.....|++... ...++++......++.....++..+.+..+.+..+... .+.. ....+.+.....+..++..++
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 338 (491)
T 4aps_A 264 YFAWMISSVKV-TSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPF 338 (491)
T ss_dssp HHHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHH
T ss_pred HHHHHhhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHH
Confidence 00000110000 01223333344445555556666666655554433222 1211 134566677777888888888
Q ss_pred hhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHH
Q 008106 398 YNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSAD 477 (577)
Q Consensus 398 ~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 477 (577)
.+++.|++.||. .....++..+..+..+++++........ +...+.+.++.++.+++.+++.
T Consensus 339 ~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~g~~~ 400 (491)
T 4aps_A 339 FAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALY------------GTSGKVSPLWLVGSWALVILGE 400 (491)
T ss_dssp HHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHC------------CCCTTCCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHhc------------CCCCCccHHHHHHHHHHHHHHH
Confidence 888877776653 3445667788888888877766543211 0012346778888899999999
Q ss_pred HHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHH
Q 008106 478 LFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGG 557 (577)
Q Consensus 478 ~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~ 557 (577)
+...|..++++.+..|++.||+++|+.++...+|..+++.+.+.+.+ .++...|+.++++++
T Consensus 401 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 462 (491)
T 4aps_A 401 MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA------------------KSEVAYFSYFGLGSV 462 (491)
T ss_dssp HTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG------------------SSTTHHHHHTHHHHH
T ss_pred HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------ccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998777642 233457888888888
Q ss_pred HHHHHHHHHhhhccc
Q 008106 558 LNFLHFLFWAARYKY 572 (577)
Q Consensus 558 l~~v~~~~~~~~~~~ 572 (577)
+..++.++..++.++
T Consensus 463 ~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 463 VLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887777766554
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=7.2e-30 Score=278.57 Aligned_cols=474 Identities=19% Similarity=0.336 Sum_probs=290.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC------CCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHH
Q 008106 28 GMLAACFVLAVEVLENLAYLANASNLVLYLSKFMH------FSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYV 101 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg------~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~ 101 (577)
++|.++.+.+..++.++.+|++..+++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 45667889999999999999999999999999999 999999999999999999999999999999439999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchh
Q 008106 102 ISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLG 181 (577)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 181 (577)
++.++..++.+++++++. +.+.++++|++.|++.+...+...+++.|++|+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--- 142 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFEH------------------------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN--- 142 (524)
T ss_dssp HHHHHHHHHHHHHHHTSS------------------------CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---
T ss_pred HHHHHHHHHHHHHHHhcc------------------------cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---
Confidence 999999999998887641 46778899999999999999999999999999888
Q ss_pred hhchhh---hHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHH
Q 008106 182 RKQRSA---FFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVL 258 (577)
Q Consensus 182 ~~~r~~---~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (577)
|++ .+++++...++|..++|.+++++.+..||++.|++.++..+++++.+++..++.+++++++++..+..+.+
T Consensus 143 ---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (524)
T 2xut_A 143 ---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVI 219 (524)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHH
Confidence 754 45558999999999999999999988999999999888777666665554443333222222211111111
Q ss_pred HHHHHhhccCCCCCCc-------ccccccCCCCCCCCccCCCCCccCCCCCCCCCch---hHHHHHHhhcCCCCCcc---
Q 008106 259 TAAIFNTCKSKNSSNA-------VTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTED---IKFLNRALRNNPAYPIV--- 325 (577)
Q Consensus 259 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--- 325 (577)
....+++..+.+.... ..... ... .......... ..+....+ ....+|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 281 (524)
T 2xut_A 220 RSALLTKVEGKGNIGLVLALIGGVSAAY-------ALV---------NIPTLGIVAGLCCAMVLVMGF--VGAGASLQLE 281 (524)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHH-------TGG---------GTTTTCSSHHHHHHHHHHHHH--HHTGGGTHHH
T ss_pred HHHHhhhhcccCccchhhhhhhhhhhhh-------hhc---------ccchhhhhhhhhhhhhhhhcc--cccchhhHHh
Confidence 1111110000000000 00000 000 0000000000 00000000 0000110
Q ss_pred ----ccchhhhhHHHHHHhHHHHHHHhHHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhh
Q 008106 326 ----QCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHV 401 (577)
Q Consensus 326 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 401 (577)
...+.+.+++++......++.....++..+.+..+.+..+...++... + .+.+.+...+.+..++..++.+++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~ 358 (524)
T 2xut_A 282 RARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFV 358 (524)
T ss_dssp HSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC
T ss_pred hhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhh
Confidence 001111233444444444555555566666666665555443333221 0 133445566667777788888877
Q ss_pred hhhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHH
Q 008106 402 IIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTL 481 (577)
Q Consensus 402 ~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 481 (577)
..+..+|..++ .+..+++..|..+.++++++.+..+... +.....+.+++++.+++.+++++...
T Consensus 359 ~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~g~~~~~~~ 423 (524)
T 2xut_A 359 LYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM------------DGGSALSIFWQILPYALLTFGEVLVS 423 (524)
T ss_dssp ---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT------------TTTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh------------cCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 65555554333 4455667778877777776655421000 00112466778888999999999999
Q ss_pred hhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHH
Q 008106 482 AGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFL 561 (577)
Q Consensus 482 p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v 561 (577)
|..++++.+.+|++.||+++|+.++...+|+.+++.+.+.+.+.+. .+|.+..+. +.....|++.+++++++.+
T Consensus 424 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 497 (524)
T 2xut_A 424 ATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGM--SVTAFQMFFFAGFAILAAI 497 (524)
T ss_dssp HHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHS--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccc--cccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998763110 012110000 0012237888888888888
Q ss_pred HHHHHhhhcccc
Q 008106 562 HFLFWAARYKYS 573 (577)
Q Consensus 562 ~~~~~~~~~~~~ 573 (577)
+++++.++++++
T Consensus 498 ~~~~~~~~~~~~ 509 (524)
T 2xut_A 498 VFALYARSYQMQ 509 (524)
T ss_dssp HHC---------
T ss_pred HHHHHHHHhccc
Confidence 887777666543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=4.4e-26 Score=242.95 Aligned_cols=403 Identities=8% Similarity=-0.058 Sum_probs=256.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
++.++.+.+..++..+..+.+...++.+. +++ .+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 45566777777777777776666666555 567 9999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHH----HhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhc
Q 008106 109 MGLLLLTV----QAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQ 184 (577)
Q Consensus 109 ~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 184 (577)
++.+++++ ++ +.+.++++|+++|++.+...+...+++.|.+|+++
T Consensus 104 ~~~~~~~~~~~~~~-------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------ 152 (451)
T 1pw4_A 104 AVMLFMGFVPWATS-------------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------ 152 (451)
T ss_dssp HHHHHHHHCHHHHS-------------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------
T ss_pred HHHHHHHhhhhccc-------------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------
Confidence 99999988 65 45678999999999999999999999999999988
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHH
Q 008106 185 RSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIF 263 (577)
Q Consensus 185 r~~~~~~~~~~~~lG~~igp~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (577)
|++.+++.+...++|..++|.+++++.+..| ||+.|++.++..++..++.++..++.++.....+.
T Consensus 153 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 219 (451)
T 1pw4_A 153 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI------------- 219 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-------------
Confidence 9999999999999999999999999888888 99999988877665544443333321111100000
Q ss_pred hhccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHH
Q 008106 264 NTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFP 343 (577)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (577)
++. +.+ .++ +.+. +. ....++++....+....+.++..
T Consensus 220 --------~~~------------~~~-~~~--~~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~-- 257 (451)
T 1pw4_A 220 --------EEY------------KND-YPD--DYNE--KA---------------EQELTAKQIFMQYVLPNKLLWYI-- 257 (451)
T ss_dssp --------TTT------------CCC---------------------------------CCTHHHHHHTSSCHHHHHH--
T ss_pred --------hhh------------ccc-ccc--cchh--hh---------------hcccccccchHHHHHcCHHHHHH--
Confidence 000 000 000 0000 00 00000000000000001222111
Q ss_pred HHHHhHHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHH
Q 008106 344 IFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIG 423 (577)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~ 423 (577)
.....+..........++..+ .....+-.....+.+.....++.+++.++.+++.|++.+ ++++.+.
T Consensus 258 -~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~---------~~~~~~~ 324 (451)
T 1pw4_A 258 -AIANVFVYLLRYGILDWSPTY---LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR---------GNRGATG 324 (451)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH---BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST---------TCHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHH---HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCchhHH
Confidence 111111111111111222211 111111001111223333444555556666666555410 1122233
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHH
Q 008106 424 TGLILSI-VAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATS 502 (577)
Q Consensus 424 ~g~~l~~-i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g 502 (577)
.+..+.. ++++++... ...+.+......++.|++.....+..+++..+..|++.||+++|
T Consensus 325 ~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 385 (451)
T 1pw4_A 325 VFFMTLVTIATIVYWMN-------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 385 (451)
T ss_dssp HHHHHHHHHHHHHTTSC-------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHH
Confidence 4443333 444433321 01245556667788888888888888999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 008106 503 LSWASLAM-GYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAAR 569 (577)
Q Consensus 503 ~~~~~~~l-g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~ 569 (577)
+.+....+ |..+++.+.+.+.+. .++...|++.+++++++.++++...++
T Consensus 386 ~~~~~~~~~g~~~~~~~~g~l~~~-----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 386 FTGLFGYLGGSVAASAIVGYTVDF-----------------FGWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-----------------SCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----------------cCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999 999999999988741 235567888888888887776665443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=6.3e-25 Score=233.24 Aligned_cols=352 Identities=14% Similarity=0.133 Sum_probs=231.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 28 GMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
+++.+..+.+..++..+....+...+ .++++++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHH
Confidence 45556666666667767666555455 457789999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHH---HHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhc
Q 008106 108 FMGLLLL---TVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQ 184 (577)
Q Consensus 108 ~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 184 (577)
+++.+++ .+++ +.+.++++|++.|++.|...+...+++.|.+|+++
T Consensus 102 ~~~~~~~~~~~~~~-------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------ 150 (438)
T 3o7q_A 102 ALGAALFWPAAEIM-------------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------ 150 (438)
T ss_dssp HHHHHHHHHHHHTT-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------
T ss_pred HHHHHHHHhccccc-------------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------
Confidence 9999998 5544 67889999999999999999999999999999998
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHHHhc-cccc-------------------------hhHHHHHHHHHHHHHHHHHHhcC
Q 008106 185 RSAFFNYYVFCLSCGALIAVTFVVWIE-DNKG-------------------------WQWGFGISTATILLSIPIFLLGS 238 (577)
Q Consensus 185 r~~~~~~~~~~~~lG~~igp~~~~~l~-~~~g-------------------------w~~~f~~~~~~~~~~~~~~~~~~ 238 (577)
|++.+++.+...++|..++|.+++++. +..+ |++.|++.++..++..+.+++.+
T Consensus 151 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 230 (438)
T 3o7q_A 151 GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK 230 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999988 5554 99999877665554444443321
Q ss_pred -ccccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhh
Q 008106 239 -PFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALR 317 (577)
Q Consensus 239 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (577)
++.++++++++ + + .....++.
T Consensus 231 ~p~~~~~~~~~~-------------------------------------------------~--~--~~~~~~~~----- 252 (438)
T 3o7q_A 231 FPALQSDNHSDA-------------------------------------------------K--Q--GSFSASLS----- 252 (438)
T ss_dssp CCCCTTTCCCCS-------------------------------------------------S--T--TSHHHHHH-----
T ss_pred CCcccccccccc-------------------------------------------------c--c--cchhhhHH-----
Confidence 11100000000 0 0 00000000
Q ss_pred cCCCCCccccchhhhhHHHHHHhHH-HHHHHhHHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhh
Q 008106 318 NNPAYPIVQCTVKEVEEVKIVVKIF-PIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAP 396 (577)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 396 (577)
+....+.++... ..+.....+.......+.++.....+.+.. ..+.+.....++.+++.+
T Consensus 253 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~~ 313 (438)
T 3o7q_A 253 -------------RLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAG------FAANYLTGTMVCFFIGRF 313 (438)
T ss_dssp -------------HHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHH------HHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchh------HHHHHHHHHHHHHHHHHH
Confidence 000011111111 111111111111111111101111111111 112223333444555566
Q ss_pred hhhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHH
Q 008106 397 VYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSA 476 (577)
Q Consensus 397 l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 476 (577)
+.+++.|++.+| +.+..+.++..+++++.... +..+.+..+++.+++
T Consensus 314 ~~g~l~~r~~~~-----------~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~ 360 (438)
T 3o7q_A 314 TGTWLISRFAPH-----------KVLAAYALIAMALCLISAFA----------------------GGHVGLIALTLCSAF 360 (438)
T ss_dssp HHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHc----------------------CCcHHHHHHHHHHHH
Confidence 666665554333 33555666666665555441 222344556788888
Q ss_pred HHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008106 477 DLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 524 (577)
Q Consensus 477 ~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~ 524 (577)
.....|..+++..+..|++ ++.+.++.. .+.+|..+++.+.+.+.+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~ 406 (438)
T 3o7q_A 361 MSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD 406 (438)
T ss_dssp HTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 8888999999999999987 999999887 667999999999998874
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.92 E-value=7.5e-24 Score=228.69 Aligned_cols=410 Identities=14% Similarity=0.109 Sum_probs=225.1
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchH
Q 008106 66 SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKA 145 (577)
Q Consensus 66 ~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (577)
.+.+++.+++.++..++++++|+++||+ |||+++.++.+++.++.++++++........+.. .--..-..+.
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~-------~~~~~~a~~~ 126 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDN-------TVPVYLAGYV 126 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSS-------SCCGGGGGCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh-------HHHHHHhhhH
Confidence 4567888889999999999999999997 9999999999999999999986431110000000 0000012267
Q ss_pred HHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccc--------cchh
Q 008106 146 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN--------KGWQ 217 (577)
Q Consensus 146 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~--------~gw~ 217 (577)
+.++++|+++|+|.|+..+..+.+++|..|+++ |++..++.+.+..+|..+++.++..+... .+|+
T Consensus 127 ~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4gc0_A 127 PEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWR 200 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhH
Confidence 899999999999999999999999999999999 99999999999999999998887765432 3467
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCccCCCCCcc
Q 008106 218 WGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVK 297 (577)
Q Consensus 218 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (577)
..+.+..+..++.+...++.++..+.... +.+.++..+.+.....+... + +
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~peSp~~L~~-~~~~~~a~~~l~~~~~~~~~----~------------------------~ 251 (491)
T 4gc0_A 201 YMFASECIPALLFLMLLYTVPESPRWLMS-RGKQEQAEGILRKIMGNTLA----T------------------------Q 251 (491)
T ss_dssp HHHHTTHHHHHHHHHHGGGSCCCHHHHHH-TTCHHHHHHHHHHHHHHHHH----H------------------------H
T ss_pred HHhhhhhhhhhhhhhhhhcCCCChHHHHH-cCchhHHHHhHHHhcCCchh----H------------------------H
Confidence 66666555544444433332211110000 01111111111111000000 0 0
Q ss_pred CCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHHHHHhHHHHhhhhccchhHHhhhhhccccCCccc
Q 008106 298 EKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLK 377 (577)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (577)
+. .+..+..++.+.. . ........++.........++. +. .. .....+........+...
T Consensus 252 ~~------~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~--~~---~~-~~~~~~~~~~~~~~~~~~ 311 (491)
T 4gc0_A 252 AV------QEIKHSLDHGRKT----G----GRLLMFGVGVIVIGVMLSIFQQ--FV---GI-NVVLYYAPEVFKTLGAST 311 (491)
T ss_dssp HH------HHHHHHHHHHHHH----T----THHHHSCCTHHHHHHHHHHHHH--HT---CH-HHHHHHHHHHHHHSSCCH
T ss_pred HH------HHHHHHHHhhhhh----h----hHHHHhcccHHHHHHHHHHHHH--Hh---hh-hHHHhcchHHHHhcCCCc
Confidence 00 0000000000000 0 0000000111111111101000 00 00 000001001111100000
Q ss_pred cCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 008106 378 VPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE 457 (577)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 457 (577)
...........+..++...+...+.|++.|| +.+..+...+.++++..+.....
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----------~~~~~~~~~~~~~~~~l~~~~~~--------------- 365 (491)
T 4gc0_A 312 DIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----------PLQIIGALGMAIGMFSLGTAFYT--------------- 365 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----------HHHHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----------chhccchHHHHHHHHHHHHHHhc---------------
Confidence 0011111222333444455555666655554 22455666666666555443211
Q ss_pred CcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccC
Q 008106 458 PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG 537 (577)
Q Consensus 458 ~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~ 537 (577)
...++..++..+++.........|..+.+..|.+|.+.|++++|+....+.+++.+++.+.+.+.+.. |..
T Consensus 366 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~~- 436 (491)
T 4gc0_A 366 -QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WLV- 436 (491)
T ss_dssp -TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HHH-
T ss_pred -ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH-
Confidence 00122222222233333333455778899999999999999999999999999999999888775321 100
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 008106 538 SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 576 (577)
Q Consensus 538 ~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~~~~~~ 576 (577)
...+....|++++++++++.++.+++.+++|+++.|
T Consensus 437 ---~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLe 472 (491)
T 4gc0_A 437 ---AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE 472 (491)
T ss_dssp ---HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHH
T ss_pred ---hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHH
Confidence 012233468899999999999999999999887753
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.89 E-value=3.5e-23 Score=215.55 Aligned_cols=167 Identities=10% Similarity=0.086 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHH
Q 008106 33 CFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLL 112 (577)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~ 112 (577)
+.+.+..++..+......+.++.+ .+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 456666777777777676666654 578999999999999999999999999999999997 999999999999999999
Q ss_pred HHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHH
Q 008106 113 LLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYY 192 (577)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (577)
++.+++ +.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.
T Consensus 81 ~~~~~~-------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 129 (375)
T 2gfp_A 81 VAVTTS-------------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLL 129 (375)
T ss_dssp HHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHH
T ss_pred HHHHhc-------------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHH
Confidence 998876 67889999999999999999999999999999988 99999999
Q ss_pred HHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 008106 193 VFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIP 232 (577)
Q Consensus 193 ~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 232 (577)
+...++|..++|.+++++.+..||++.|.+.++..++..+
T Consensus 130 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 130 NMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988999999987776555444
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.87 E-value=1.1e-22 Score=215.90 Aligned_cols=392 Identities=10% Similarity=0.015 Sum_probs=224.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
|.++.+....++..+.+..+.++++.|+++++|+++.+.+++.+.+.++..++++++|+++||+ ||||.+.++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4577777777777777777788999999999999999999999999999999999999999997 999999998887655
Q ss_pred HHHHH---HHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchh
Q 008106 110 GLLLL---TVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186 (577)
Q Consensus 110 ~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (577)
+.... .+... ....+..++.+.+++.|...+...+...++.++.. .+++
T Consensus 86 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T 2cfq_A 86 MFAPFFIFIFGPL------------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp CHHHHHHHTHHHH------------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHT
T ss_pred HHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcc
Confidence 32211 22110 00012334444444444444444444545444321 1156
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhc
Q 008106 187 AFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 266 (577)
Q Consensus 187 ~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (577)
..++..+...++|..++|.+++++.+ .+|++.|++.++..++.++..++.+++. +++.+.
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------------- 197 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA---PSSATV---------------- 197 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC---SCSSCS----------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc---cccccc----------------
Confidence 66777777788999999999999876 5899999876655433333222221110 000000
Q ss_pred cCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHHHH
Q 008106 267 KSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFM 346 (577)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (577)
. +.. + +. . +..+..++. +.-..++.+.......
T Consensus 198 ---~----------------~~~------~-~~--~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 230 (417)
T 2cfq_A 198 ---A----------------NAV------G-AN--H-SAFSLKLAL------------------ELFRQPKLWFLSLYVI 230 (417)
T ss_dssp ---S----------------SSS------S-SC--C-CCCCHHHHH------------------HHTTCHHHHHHHHHHH
T ss_pred ---c----------------ccc------c-cc--c-ccccHHHHH------------------HHhcCCchhhHHHHHH
Confidence 0 000 0 00 0 000000000 0000122211111111
Q ss_pred H-hHHHHhhhhccchhHHhhhhhccccCCccccCC---CCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHH
Q 008106 347 S-TIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPP---ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRI 422 (577)
Q Consensus 347 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i 422 (577)
. ...+.....+.+.++... .... +... +.....+.+..+++..+.+++.||+.+| +.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l 292 (417)
T 2cfq_A 231 GVSCTYDVFDQQFANFFTSF---FATG----EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NAL 292 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---SSSH----HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---Hhcc----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHH
Confidence 1 111112111211121110 1100 0000 1112223333444555556665555433 235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHH
Q 008106 423 GTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATS 502 (577)
Q Consensus 423 ~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g 502 (577)
..+..+..++++..+.. .+.+.++....+.+++.....+..+.++.|..|++.||++.+
T Consensus 293 ~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g 351 (417)
T 2cfq_A 293 LLAGTIMSVRIIGSSFA---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYL 351 (417)
T ss_dssp HHHHHHHHHHHHHHTTC---------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 55665555554443321 133444555566677766677777899999999999999999
Q ss_pred HH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008106 503 LS-WASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS 573 (577)
Q Consensus 503 ~~-~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~~~ 573 (577)
+. +..+++|+.+++.+.+.+.+ ..++...|.+.+++++++.++++...++.++.
T Consensus 352 ~~~~~~~~lg~~~gp~l~G~l~~-----------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 352 VCFCFFKQLAMIFMSVLAGNMYE-----------------SIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHTTTHHHHHHHHTHHHHTHHH-----------------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred HHHHHHHhHHHHHhhhhHHHHHH-----------------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 94 88888999999999988763 12455678888888888888776666655443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.47 E-value=3.1e-13 Score=143.28 Aligned_cols=179 Identities=13% Similarity=0.135 Sum_probs=151.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhccc--chhHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFF--TTYRIYVISAAI 106 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~--Grr~~l~~~~~~ 106 (577)
.+.++.+.+..++..+.++++..++|.|+++.+|+++.+.+.+.+...++..++.++.|+++|| + |||+.+.++..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 4568888888999999999999999999998899999999999999999999999999999999 6 899988888777
Q ss_pred HH-HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhch
Q 008106 107 EF-MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185 (577)
Q Consensus 107 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 185 (577)
.. ++.+++.+.+ ..+.+.+.+..++.|++.+...+...+++.|.+|+++ |
T Consensus 330 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 380 (451)
T 1pw4_A 330 LVTIATIVYWMNP-----------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------A 380 (451)
T ss_dssp HHHHHHHHTTSCC-----------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------H
T ss_pred HHHHHHHHHHHhc-----------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------h
Confidence 66 5555444321 0145566777778888888888888899999999998 9
Q ss_pred hhhHHHHHHHHhh-hhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhc
Q 008106 186 SAFFNYYVFCLSC-GALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 186 ~~~~~~~~~~~~l-G~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (577)
++.+++++...++ |..++|.+.|++.+..||+..|++.++..+++.++.++.
T Consensus 381 g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 381 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999998887776666555443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.42 E-value=2.6e-12 Score=135.75 Aligned_cols=170 Identities=15% Similarity=0.090 Sum_probs=139.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLY-LSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
.+.++...+..++....++.+..+++.| +++.+|.+..+++.+.+...++..++.+++|+++||+ |||+.+.++.++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA 335 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 3557788888888888889999999999 8888899999999999999999999999999999996 9999999999888
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
.++.+++.+.+ +.. ..+..++.|++.+...+...++..|.+|++ ++.
T Consensus 336 ~~~~~~~~~~~-------------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~ 382 (438)
T 3o7q_A 336 MALCLISAFAG-------------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKY 382 (438)
T ss_dssp HHHHHHHHHCC-------------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHH
T ss_pred HHHHHHHHHcC-------------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccc
Confidence 88887777654 233 233447788898988999999989998854 455
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHH
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTATILLSIPI 233 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~ 233 (577)
+.++.. ...+|..++|.+.|++.+..| ++..|.+.++..++.++.
T Consensus 383 ~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 383 GSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 555554 567999999999999999998 999998876655544443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.30 E-value=9.6e-12 Score=131.37 Aligned_cols=178 Identities=8% Similarity=0.022 Sum_probs=130.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC---chhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFS---PSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAI 106 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s---~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~ 106 (577)
+.++...+..++....++....++|.|+.+.++.. ..+.+...+...+...++.++.|+++||+ |||+.+.++.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 34555555545555555566667888987766532 33445666666677788899999999997 999999988888
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchh
Q 008106 107 EFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186 (577)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (577)
.+++.++.++.+ +.+.+++..++.+++.+...+....++.|.+|++. |+
T Consensus 299 ~~~~~~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g 347 (417)
T 2cfq_A 299 MSVRIIGSSFAT-------------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SA 347 (417)
T ss_dssp HHHHHHHHTTCC-------------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HH
T ss_pred HHHHHHHHHHhc-------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HH
Confidence 777665554432 34455566666777766666667789999999988 99
Q ss_pred hhHHH-HHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008106 187 AFFNY-YVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSP 239 (577)
Q Consensus 187 ~~~~~-~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (577)
++.++ ++...++|+.++|.++|++.+..|++..|.+.++..+++.++.+...+
T Consensus 348 ~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 348 TIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99888 577888999999999999998889999998888777766665544333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.21 E-value=4.4e-11 Score=128.48 Aligned_cols=187 Identities=12% Similarity=0.004 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHH-----HHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYV-----ISAAI 106 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~-----~~~~~ 106 (577)
.+.+.+..++....+......++.|+++.++.+..+.+.+.....+...++.++.|+++||+ |||+... ++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 45556666677777777788899999998998888888888888888999999999999997 9987655 77777
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchh
Q 008106 107 EFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186 (577)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (577)
..++.+++.+...... +....+.+.+.+..++.|++.+...+...+++.|.+|++. |+
T Consensus 364 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g 421 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG----------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NS 421 (491)
T ss_dssp HHHHHTTTHHHHHHCC----------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SS
T ss_pred HHHHHHHHHHHHHhcC----------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HH
Confidence 7777766665431100 0111245566777788999999989999999999999999 99
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCcccc
Q 008106 187 AFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYR 242 (577)
Q Consensus 187 ~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 242 (577)
.+.++++...++|..++|.+.+++.+ .++...|.+.++..+++.++.++..++.+
T Consensus 422 ~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 422 QMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp SSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988866 46777787777666666555555544433
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.06 E-value=1.1e-09 Score=117.50 Aligned_cols=185 Identities=10% Similarity=0.017 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGL 111 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~ 111 (577)
........++..+..+........++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~ 356 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGM 356 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHH
Confidence 34444444444444333334444566678888888877777778888899999999999997 99999999998888887
Q ss_pred HHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHH
Q 008106 112 LLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY 191 (577)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (577)
+.++...... ............+..+++.+ ..+....+.+|.+|++. |+++.++
T Consensus 357 ~~l~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~------R~~~~g~ 410 (491)
T 4gc0_A 357 FSLGTAFYTQ-------------------APGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAI------RGKALAI 410 (491)
T ss_dssp HHHHHHHHTT-------------------CCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTT------HHHHHHH
T ss_pred HHHHHHHhcc-------------------cchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhH------HHHHHHH
Confidence 7766543211 00111222222222333333 34667789999999999 9999999
Q ss_pred HHHHHhhhhHHHHHHHHHhcc------ccchhHHHHHHHHHHHHHHHHHHhcCccccc
Q 008106 192 YVFCLSCGALIAVTFVVWIED------NKGWQWGFGISTATILLSIPIFLLGSPFYRN 243 (577)
Q Consensus 192 ~~~~~~lG~~igp~~~~~l~~------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 243 (577)
.+...++|+.+++.+.+.+.+ ..++...|++.+++.+++.+..++..||.++
T Consensus 411 ~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 411 AVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 999999999999888766643 2355667777777776666666555565443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.90 E-value=3.3e-10 Score=117.18 Aligned_cols=163 Identities=12% Similarity=0.025 Sum_probs=128.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHH-HH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAI-EF 108 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~-~~ 108 (577)
|.++...+..++....++.+..++|.|+++.+|.++.+.+.+.+...++..++.++.|+++||+ ||+ +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 5577788888888888899999999999988999999999999999999999999999999996 883 2333332 22
Q ss_pred HHHH--HHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchh
Q 008106 109 MGLL--LLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186 (577)
Q Consensus 109 ~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (577)
.+.. ....... .+.+.+++..++.|++.+...+...+++.|.+| ++ |+
T Consensus 276 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g 325 (375)
T 2gfp_A 276 AGLLMWIPDWFGV-----------------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AG 325 (375)
T ss_dssp TSSSSSHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HH
T ss_pred HHHHHHHHhhhcc-----------------------ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cc
Confidence 2222 1222110 044556677788899999999999999999998 66 99
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHH
Q 008106 187 AFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTA 225 (577)
Q Consensus 187 ~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~ 225 (577)
+..++.+...++|..++|.+.+.+.+..+|+..+.+.++
T Consensus 326 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 326 TAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 999999999999999999999999887788877776443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.16 E-value=1e-06 Score=95.19 Aligned_cols=150 Identities=11% Similarity=0.084 Sum_probs=93.9
Q ss_pred hhhHHHHHHHHHHHHHhHHHHhh----hcccch----hHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCC
Q 008106 68 SANIVTNFMGTAFLLALFGGFLA----DAFFTT----YRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE 139 (577)
Q Consensus 68 ~~~~~~~~~~~~~i~~~~~G~la----D~~~Gr----r~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (577)
.+.+.....++..+..++.+++. ||+ || ++.+.++.++.+++.+++++..... +.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------------~~ 399 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMM----------------DG 399 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTT----------------TT
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHh----------------cC
Confidence 44444444444555556666654 443 43 3456677777776666655432100 00
Q ss_pred CCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhcccc--ch-
Q 008106 140 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK--GW- 216 (577)
Q Consensus 140 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~--gw- 216 (577)
....+.+.+.+..++.|++.+...+...+++.|..|++. |++++++++...++|..++|.+.+++.+.. +|
T Consensus 400 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~ 473 (524)
T 2xut_A 400 GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQI 473 (524)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 011245566777888999999999999999999999998 999999999999999999999999987743 23
Q ss_pred --------hHHHHHHHHHHHHHHHHHHhcCcc
Q 008106 217 --------QWGFGISTATILLSIPIFLLGSPF 240 (577)
Q Consensus 217 --------~~~f~~~~~~~~~~~~~~~~~~~~ 240 (577)
+..|++.++..+++.+++++..++
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (524)
T 2xut_A 474 VQTGMSVTAFQMFFFAGFAILAAIVFALYARS 505 (524)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 233666655555555554444443
Done!