Query 008109
Match_columns 577
No_of_seqs 228 out of 1726
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 19:34:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 1E-108 3E-113 891.7 63.5 538 27-577 1-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 5E-107 1E-111 870.3 60.6 519 26-577 24-554 (596)
3 PLN02991 oxidoreductase 100.0 2E-104 4E-109 846.7 59.4 505 22-577 21-530 (543)
4 PLN02354 copper ion binding / 100.0 7E-104 1E-108 847.8 60.3 508 25-577 23-538 (552)
5 PLN02792 oxidoreductase 100.0 8E-104 2E-108 843.3 58.6 507 26-577 13-523 (536)
6 PLN02835 oxidoreductase 100.0 1E-103 3E-108 844.5 60.7 497 26-577 26-531 (539)
7 PLN02168 copper ion binding / 100.0 9E-103 2E-107 835.2 60.3 501 26-577 23-541 (545)
8 KOG1263 Multicopper oxidases [ 100.0 4E-102 1E-106 822.7 59.5 533 18-577 17-555 (563)
9 PLN02604 oxidoreductase 100.0 1.6E-97 3E-102 806.6 60.9 532 8-577 2-561 (566)
10 PLN02191 L-ascorbate oxidase 100.0 1.1E-97 2E-102 805.7 58.2 528 12-577 6-561 (574)
11 TIGR03388 ascorbase L-ascorbat 100.0 2.6E-96 6E-101 795.2 59.1 512 29-577 1-538 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 2.2E-93 4.9E-98 769.8 54.9 491 30-560 9-534 (538)
13 TIGR01480 copper_res_A copper- 100.0 2.1E-78 4.6E-83 651.8 50.9 419 30-558 46-587 (587)
14 PRK10965 multicopper oxidase; 100.0 4.6E-75 1E-79 622.0 45.3 428 29-558 45-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 1.5E-73 3.2E-78 605.5 44.9 402 31-559 47-469 (471)
16 COG2132 SufI Putative multicop 100.0 1.7E-59 3.6E-64 500.9 42.6 400 43-558 47-449 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 1.2E-47 2.6E-52 386.6 25.1 263 27-315 25-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 2.5E-36 5.4E-41 259.9 12.3 116 35-150 1-117 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 2.2E-29 4.7E-34 225.9 12.2 107 449-559 30-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 8.1E-27 1.8E-31 213.7 12.5 149 161-313 1-158 (159)
21 TIGR03095 rusti_cyanin rusticy 99.8 4.8E-18 1E-22 151.8 11.4 102 44-147 37-148 (148)
22 TIGR02376 Cu_nitrite_red nitri 99.6 9.8E-14 2.1E-18 140.4 24.7 247 192-559 47-297 (311)
23 TIGR03096 nitroso_cyanin nitro 99.6 7E-15 1.5E-19 126.6 12.2 115 7-137 2-124 (135)
24 TIGR01480 copper_res_A copper- 99.6 9.8E-14 2.1E-18 150.8 21.6 226 51-292 249-572 (587)
25 PRK10965 multicopper oxidase; 99.4 3.3E-11 7E-16 130.2 22.7 236 47-294 211-510 (523)
26 PRK10883 FtsI repressor; Provi 99.3 1.4E-10 3E-15 124.2 19.9 223 46-295 207-456 (471)
27 PLN02835 oxidoreductase 99.3 4E-10 8.8E-15 122.2 21.0 239 48-292 191-497 (539)
28 TIGR03389 laccase laccase, pla 99.2 1.7E-09 3.7E-14 118.2 23.2 240 49-292 167-505 (539)
29 COG2132 SufI Putative multicop 99.2 5.7E-10 1.2E-14 119.8 18.2 234 45-294 186-436 (451)
30 PLN02604 oxidoreductase 99.0 2.4E-09 5.2E-14 117.4 12.6 92 453-561 55-146 (566)
31 PLN02168 copper ion binding / 99.0 8.7E-08 1.9E-12 103.9 23.4 240 48-292 188-501 (545)
32 TIGR03388 ascorbase L-ascorbat 98.9 1.1E-07 2.3E-12 104.1 22.6 228 61-292 204-509 (541)
33 TIGR03390 ascorbOXfungal L-asc 98.9 7.1E-08 1.5E-12 105.3 20.8 240 49-292 172-517 (538)
34 PLN02991 oxidoreductase 98.9 1.8E-07 3.9E-12 101.4 23.3 240 48-292 190-496 (543)
35 PLN02354 copper ion binding / 98.9 1.3E-07 2.8E-12 103.0 21.9 239 49-292 190-504 (552)
36 PLN02792 oxidoreductase 98.9 2.1E-07 4.5E-12 100.9 23.3 241 47-292 178-489 (536)
37 PF07732 Cu-oxidase_3: Multico 98.7 6.1E-08 1.3E-12 83.6 8.6 91 452-560 25-116 (117)
38 PLN02191 L-ascorbate oxidase 98.7 1.4E-06 3.1E-11 95.6 21.2 234 53-292 219-532 (574)
39 PF07731 Cu-oxidase_2: Multico 98.7 1.7E-07 3.7E-12 83.7 11.6 79 211-293 32-121 (138)
40 PRK02710 plastocyanin; Provisi 98.6 3.4E-07 7.5E-12 79.2 11.7 73 60-147 47-119 (119)
41 PF13473 Cupredoxin_1: Cupredo 98.6 1.6E-07 3.4E-12 79.5 7.9 70 60-146 35-104 (104)
42 PLN00044 multi-copper oxidase- 98.5 1.5E-05 3.2E-10 87.3 20.5 228 60-292 217-519 (596)
43 TIGR02656 cyanin_plasto plasto 98.3 2.9E-06 6.4E-11 70.9 8.7 81 60-147 17-99 (99)
44 KOG1263 Multicopper oxidases [ 98.2 0.00025 5.4E-09 77.0 21.2 241 48-292 192-521 (563)
45 PF00127 Copper-bind: Copper b 98.1 8.5E-06 1.8E-10 68.2 7.8 82 60-147 17-99 (99)
46 TIGR02657 amicyanin amicyanin. 98.1 1.5E-05 3.2E-10 64.3 8.7 73 60-147 11-83 (83)
47 TIGR03095 rusti_cyanin rusticy 98.0 2.2E-05 4.8E-10 70.4 8.5 93 452-558 51-148 (148)
48 PRK02888 nitrous-oxide reducta 98.0 2.7E-05 5.8E-10 84.0 10.4 99 40-149 533-635 (635)
49 PF00394 Cu-oxidase: Multicopp 98.0 2.7E-05 5.9E-10 71.3 9.0 94 452-559 59-157 (159)
50 TIGR03094 sulfo_cyanin sulfocy 98.0 0.00024 5.3E-09 63.8 14.5 100 49-151 73-189 (195)
51 PF06525 SoxE: Sulfocyanin (So 97.9 0.00011 2.3E-09 67.7 10.2 102 49-151 74-190 (196)
52 TIGR02656 cyanin_plasto plasto 97.5 0.0004 8.6E-09 58.0 8.0 83 453-558 17-99 (99)
53 TIGR02375 pseudoazurin pseudoa 97.5 0.0008 1.7E-08 57.5 8.9 75 60-150 15-90 (116)
54 COG3794 PetE Plastocyanin [Ene 97.4 0.00078 1.7E-08 58.2 8.6 75 60-148 54-128 (128)
55 TIGR03102 halo_cynanin halocya 97.2 0.0025 5.3E-08 54.4 9.4 73 60-147 42-115 (115)
56 TIGR03096 nitroso_cyanin nitro 97.1 0.0023 5E-08 55.7 8.0 59 454-543 62-120 (135)
57 PF00127 Copper-bind: Copper b 97.0 0.0044 9.6E-08 51.7 8.4 83 453-558 17-99 (99)
58 PRK02888 nitrous-oxide reducta 96.6 0.01 2.2E-07 64.6 9.4 78 454-559 556-634 (635)
59 COG4454 Uncharacterized copper 96.3 0.059 1.3E-06 47.7 10.8 88 56-148 59-158 (158)
60 PF13473 Cupredoxin_1: Cupredo 96.1 0.027 5.8E-07 47.4 7.8 61 454-545 36-96 (104)
61 PRK02710 plastocyanin; Provisi 95.9 0.041 8.8E-07 47.6 8.0 72 454-558 48-119 (119)
62 PF00116 COX2: Cytochrome C ox 95.0 0.21 4.6E-06 43.1 9.3 73 59-146 45-119 (120)
63 TIGR02695 azurin azurin. Azuri 94.9 0.12 2.5E-06 44.3 7.2 86 60-145 16-124 (125)
64 TIGR02375 pseudoazurin pseudoa 94.8 0.18 4E-06 43.1 8.3 36 521-560 54-89 (116)
65 COG4454 Uncharacterized copper 94.6 0.066 1.4E-06 47.4 5.2 93 455-558 65-157 (158)
66 TIGR02866 CoxB cytochrome c ox 93.2 0.79 1.7E-05 43.5 10.2 76 60-150 117-194 (201)
67 TIGR03102 halo_cynanin halocya 92.7 0.94 2E-05 38.7 8.8 73 454-558 43-115 (115)
68 TIGR02657 amicyanin amicyanin. 92.5 0.89 1.9E-05 36.4 8.2 73 453-558 11-83 (83)
69 PRK10378 inactive ferrous ion 92.2 1.2 2.7E-05 46.0 10.6 76 59-150 43-119 (375)
70 PF06525 SoxE: Sulfocyanin (So 89.5 3.5 7.5E-05 38.4 9.9 99 452-560 85-188 (196)
71 PF00116 COX2: Cytochrome C ox 89.2 5.4 0.00012 34.4 10.4 74 452-557 45-119 (120)
72 PF12690 BsuPI: Intracellular 87.7 7.3 0.00016 31.1 9.5 67 223-290 4-82 (82)
73 TIGR03094 sulfo_cyanin sulfocy 85.7 9.8 0.00021 34.9 10.1 99 452-560 84-187 (195)
74 COG1622 CyoA Heme/copper-type 84.8 5.5 0.00012 39.0 8.9 77 60-151 137-215 (247)
75 COG3794 PetE Plastocyanin [Ene 84.5 5.4 0.00012 34.7 7.7 74 454-559 55-128 (128)
76 TIGR02866 CoxB cytochrome c ox 83.7 5.2 0.00011 37.9 8.1 77 452-560 116-193 (201)
77 TIGR02695 azurin azurin. Azuri 81.2 13 0.00029 32.0 8.7 80 213-292 16-112 (125)
78 PF12690 BsuPI: Intracellular 80.9 11 0.00024 30.0 7.7 59 60-129 16-80 (82)
79 COG4263 NosZ Nitrous oxide red 80.1 2.7 5.9E-05 43.7 4.9 77 60-147 558-636 (637)
80 COG1470 Predicted membrane pro 73.9 1.3E+02 0.0028 32.1 17.6 182 62-295 278-470 (513)
81 MTH00047 COX2 cytochrome c oxi 69.5 1E+02 0.0022 29.0 12.6 76 60-150 116-193 (194)
82 MTH00140 COX2 cytochrome c oxi 67.8 73 0.0016 30.8 11.3 77 59-150 139-217 (228)
83 COG1622 CyoA Heme/copper-type 66.7 24 0.00052 34.5 7.7 77 452-560 136-213 (247)
84 PF05506 DUF756: Domain of unk 65.6 50 0.0011 26.5 8.3 63 59-130 8-73 (89)
85 PF01835 A2M_N: MG2 domain; I 65.1 20 0.00043 29.3 6.0 73 216-292 10-85 (99)
86 PF10633 NPCBM_assoc: NPCBM-as 65.1 9.8 0.00021 29.8 3.9 62 65-128 2-70 (78)
87 PF05938 Self-incomp_S1: Plant 64.4 39 0.00085 28.3 7.8 69 71-149 2-71 (110)
88 TIGR03079 CH4_NH3mon_ox_B meth 62.9 36 0.00079 34.8 8.1 16 105-120 337-352 (399)
89 PF07705 CARDB: CARDB; InterP 60.7 86 0.0019 25.1 9.8 67 216-292 14-83 (101)
90 MTH00129 COX2 cytochrome c oxi 57.8 1.6E+02 0.0035 28.5 11.6 76 60-150 140-217 (230)
91 PF10633 NPCBM_assoc: NPCBM-as 55.0 59 0.0013 25.3 6.8 67 218-292 2-75 (78)
92 COG2967 ApaG Uncharacterized p 54.6 16 0.00035 30.9 3.5 48 72-120 34-87 (126)
93 MTH00051 COX2 cytochrome c oxi 52.6 2.2E+02 0.0047 27.7 11.6 75 60-149 144-220 (234)
94 KOG4063 Major epididymal secre 50.7 1.2E+02 0.0027 27.0 8.4 62 60-121 48-123 (158)
95 PF11142 DUF2917: Protein of u 47.7 53 0.0011 24.7 5.1 46 215-272 2-47 (63)
96 PF04151 PPC: Bacterial pre-pe 47.3 70 0.0015 24.2 6.0 66 212-291 4-69 (70)
97 PF04379 DUF525: Protein of un 44.8 39 0.00085 27.5 4.2 49 222-273 15-67 (90)
98 PRK05461 apaG CO2+/MG2+ efflux 44.7 59 0.0013 28.3 5.6 49 222-273 32-84 (127)
99 MTH00047 COX2 cytochrome c oxi 44.0 2E+02 0.0044 27.0 9.6 76 453-560 116-192 (194)
100 TIGR01433 CyoA cytochrome o ub 43.9 65 0.0014 31.1 6.4 63 213-296 139-201 (226)
101 PF14344 DUF4397: Domain of un 42.9 1.3E+02 0.0028 25.5 7.6 21 224-244 3-24 (122)
102 MTH00140 COX2 cytochrome c oxi 42.1 1.1E+02 0.0024 29.5 7.8 76 452-559 139-215 (228)
103 PF07691 PA14: PA14 domain; I 41.4 1.7E+02 0.0037 25.3 8.5 61 215-280 54-121 (145)
104 MTH00185 COX2 cytochrome c oxi 41.3 3.4E+02 0.0073 26.3 10.9 75 59-148 139-215 (230)
105 COG1188 Ribosome-associated he 40.0 21 0.00046 29.4 2.0 33 50-82 35-67 (100)
106 TIGR01432 QOXA cytochrome aa3 37.6 82 0.0018 30.2 6.0 62 214-296 131-192 (217)
107 TIGR01432 QOXA cytochrome aa3 36.9 2.8E+02 0.006 26.5 9.6 76 60-150 130-207 (217)
108 PF04744 Monooxygenase_B: Mono 36.4 79 0.0017 32.6 5.8 15 106-120 319-333 (381)
109 cd00918 Der-p2_like Several gr 35.7 1.8E+02 0.0038 25.0 7.2 62 59-121 19-88 (120)
110 PF10989 DUF2808: Protein of u 35.7 1E+02 0.0022 27.5 5.9 34 264-297 98-132 (146)
111 PF02102 Peptidase_M35: Deuter 35.5 12 0.00027 38.6 0.0 46 81-131 77-122 (359)
112 PRK11372 lysozyme inhibitor; P 33.9 2E+02 0.0043 24.3 7.0 20 7-26 2-21 (109)
113 PRK10378 inactive ferrous ion 33.0 1.3E+02 0.0029 31.4 7.0 63 212-292 43-105 (375)
114 COG3354 FlaG Putative archaeal 31.8 3.4E+02 0.0073 24.1 8.0 64 221-291 70-141 (154)
115 PF11614 FixG_C: IG-like fold 31.2 2E+02 0.0043 24.3 6.8 50 222-280 34-85 (118)
116 PRK13202 ureB urease subunit b 31.1 1.1E+02 0.0023 25.5 4.7 59 61-119 12-83 (104)
117 PF14392 zf-CCHC_4: Zinc knuck 30.8 69 0.0015 22.6 3.2 40 510-549 5-45 (49)
118 PTZ00047 cytochrome c oxidase 30.6 4E+02 0.0086 24.3 8.7 76 452-559 72-148 (162)
119 TIGR01433 CyoA cytochrome o ub 30.5 1.4E+02 0.0031 28.8 6.4 74 454-559 140-214 (226)
120 PRK05461 apaG CO2+/MG2+ efflux 30.4 83 0.0018 27.4 4.3 21 97-118 66-86 (127)
121 COG3354 FlaG Putative archaeal 30.3 3.3E+02 0.0072 24.1 7.8 24 57-80 110-134 (154)
122 PRK10525 cytochrome o ubiquino 30.2 1.1E+02 0.0024 31.2 5.7 62 214-296 152-213 (315)
123 smart00758 PA14 domain in bact 29.7 3.4E+02 0.0073 23.3 8.3 62 215-281 52-114 (136)
124 PF15240 Pro-rich: Proline-ric 29.3 30 0.00064 31.8 1.4 9 8-16 1-9 (179)
125 cd00916 Npc2_like Niemann-Pick 29.2 2.6E+02 0.0056 24.0 7.2 62 60-121 22-92 (123)
126 PF10989 DUF2808: Protein of u 28.7 63 0.0014 28.8 3.4 26 519-544 99-128 (146)
127 PRK13681 hypothetical protein; 28.6 1.6E+02 0.0036 19.1 4.1 32 5-36 1-32 (35)
128 PTZ00047 cytochrome c oxidase 28.4 2.5E+02 0.0055 25.5 7.1 62 214-296 74-135 (162)
129 PF07172 GRP: Glycine rich pro 27.0 15 0.00032 30.2 -0.9 14 16-29 14-27 (95)
130 MTH00008 COX2 cytochrome c oxi 26.9 2.6E+02 0.0056 27.1 7.5 75 60-149 140-216 (228)
131 PF14481 Fimbrial_PilY2: Type 26.8 7.6 0.00017 32.0 -2.5 30 59-88 64-96 (118)
132 PF14326 DUF4384: Domain of un 26.3 3.2E+02 0.007 21.4 7.9 15 217-231 3-17 (83)
133 PF14874 PapD-like: Flagellar- 26.1 3.5E+02 0.0077 21.8 8.4 64 216-288 15-82 (102)
134 PRK10449 heat-inducible protei 26.0 83 0.0018 27.8 3.6 42 9-57 3-44 (140)
135 MTH00008 COX2 cytochrome c oxi 26.0 2.3E+02 0.0049 27.4 6.9 61 214-295 141-201 (228)
136 MTH00098 COX2 cytochrome c oxi 25.2 3.9E+02 0.0084 25.8 8.3 76 452-559 139-215 (227)
137 COG4633 Plastocyanin domain co 24.6 3.4E+02 0.0073 26.1 7.3 91 41-152 78-173 (272)
138 MTH00129 COX2 cytochrome c oxi 23.9 2.2E+02 0.0048 27.5 6.4 61 214-295 141-201 (230)
139 MTH00098 COX2 cytochrome c oxi 23.9 2.5E+02 0.0055 27.1 6.8 61 214-295 141-201 (227)
140 MTH00154 COX2 cytochrome c oxi 23.0 3.2E+02 0.007 26.4 7.3 62 214-296 141-202 (227)
141 PRK13791 lysozyme inhibitor; P 22.9 3.9E+02 0.0084 22.7 6.9 19 7-25 3-21 (113)
142 PRK15211 fimbrial chaperone pr 21.3 3E+02 0.0066 26.6 6.8 18 59-76 74-91 (229)
143 PRK15253 putative fimbrial ass 20.9 4E+02 0.0087 26.0 7.6 19 59-77 89-107 (242)
144 KOG3858 Ephrin, ligand for Eph 20.8 1.4E+02 0.003 28.9 4.1 14 60-73 43-56 (233)
145 PF09394 Inhibitor_I42: Chagas 20.6 3E+02 0.0066 21.8 5.8 62 62-127 1-67 (92)
146 MTH00051 COX2 cytochrome c oxi 20.6 3.1E+02 0.0067 26.6 6.7 61 214-295 145-205 (234)
147 TIGR00192 urease_beta urease, 20.5 2.3E+02 0.005 23.5 4.7 59 61-119 12-82 (101)
148 PRK04517 hypothetical protein; 20.5 3.3E+02 0.007 26.1 6.8 27 48-74 31-67 (216)
149 PRK13203 ureB urease subunit b 20.4 2.2E+02 0.0049 23.6 4.7 59 61-119 12-82 (102)
150 MTH00185 COX2 cytochrome c oxi 20.4 3.5E+02 0.0077 26.1 7.0 62 214-296 141-202 (230)
151 PRK03641 hypothetical protein; 20.4 1.7E+02 0.0038 28.0 4.9 21 48-68 29-56 (220)
152 COG3915 Uncharacterized protei 20.3 97 0.0021 27.1 2.7 24 5-28 1-24 (155)
153 PRK13254 cytochrome c-type bio 20.1 1.1E+02 0.0025 27.3 3.3 69 27-100 31-100 (148)
154 PRK09838 periplasmic copper-bi 20.0 3.5E+02 0.0076 23.1 6.1 24 63-86 88-111 (115)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.3e-108 Score=891.72 Aligned_cols=538 Identities=71% Similarity=1.257 Sum_probs=440.7
Q ss_pred eeeEEEEEEEEEEEeccCceeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCcccc
Q 008109 27 AITRHYKFNVELKNVTRLCHTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQC 106 (577)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~ 106 (577)
|++|+|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+++++|||||+++.+++|+||+|++|||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEECCCceeeEEecccccccccceEeEEEeCCCCCCCCCCCCCCeeeEEeeccccccHHHHHHHhhhCC
Q 008109 107 PIQTGQSYIYNFTIVGQRGTLWWHAHISWLRSTLYGPIIILPKRGIPYPFAKPYKEVPIVFGEWFKSDTEAIINQALQTG 186 (577)
Q Consensus 107 ~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~~ 186 (577)
+|+||++|+|+|++++++||||||||.+.+++||+|+|||+++.+...++..+|+|++|+++||++.+..+++......+
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 99999999999998669999999999988889999999999987766666677899999999999998887766655555
Q ss_pred CCCCCCCeEEEcCcCCCCCCCCCCceeEEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEEEC
Q 008109 187 GGPNVSDAYTFNGLPGPLYNCSAKDTFKLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLVIT 266 (577)
Q Consensus 187 ~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~ 266 (577)
..+..++.++||||.++++.|+....+.++|++||+|||||||+|....+.|+|+||+|+||++||.+++|+.++++.|+
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~ 240 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIG 240 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEec
Confidence 55667799999999988889988778899999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEeCCCCCCceEEEEeeecccCCCCCCCCceEEEEEEecCCCccccCCCCCCCCCcCCCCCCCCCccccccc
Q 008109 267 PGQTTNVLLETKPHYPSATFFMTARPYVTGLGTFDNSTVAGILEYEKPLNFIHSGNSIKKLPLFKPILPPLNDTNFVTNF 346 (577)
Q Consensus 267 pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~ 346 (577)
+||||||+|++++++ |+|||++.....+...+.+....|||+|++... ...+.. +..+...+......+
T Consensus 241 ~GqRydVlv~a~~~~--g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~--------~~~p~~-~~~~~~~~~~~~~~~ 309 (539)
T TIGR03389 241 PGQTTNVLLTADQSP--GRYFMAARPYMDAPGAFDNTTTTAILQYKGTSN--------SAKPIL-PTLPAYNDTAAATNF 309 (539)
T ss_pred CCCEEEEEEECCCCC--ceEEEEEeccccCccCCCCcceEEEEEECCCCC--------CCCCCC-CCCCCCCchhhhhHH
Confidence 999999999999876 999999987544432234467899999987542 111111 222222222211111
Q ss_pred cccccccCCCCCCCCCCCCCcceEEEEeccCccCCCCCCcccCCCCCeeEEEecceeccCCchhhhhhhhcCCCCCcccC
Q 008109 347 VNKLRSLGSAQFPANVPQNVDKRFFFTVGLGTSPCPRNQTCQGPNGTMFEASINNISFVMPTTALLQAHFTGQSNGVYVP 426 (577)
Q Consensus 347 ~~~l~~l~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~ 426 (577)
...++.+..+.++...|...++++++.+.+....+.. .++...++.++.|++|+++|..|.+|++.+.+.+++ |.+..
T Consensus 310 ~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~-~~~~~ 387 (539)
T TIGR03389 310 SNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCPN-NTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGIS-GVFTT 387 (539)
T ss_pred HhhcccccccCCCCCCCCCCCeEEEEEeecccccCcc-cccccCCCcEEEEEECCcccCCCCcchhhhhhcccC-Ccccc
Confidence 2234444333334444556677766666543321100 011122455788999999999898888877766543 55666
Q ss_pred CCCCCCCccccCCCCC-CCCccccCCceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCC
Q 008109 427 DFPTSPLIPFNYTGNP-PNNTMVSSGTKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAK 505 (577)
Q Consensus 427 ~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~ 505 (577)
+++..+|..|++++.. +.+...+.+++++.++.|++|||+|+|.+......||||||||+||||++|.|.|+.......
T Consensus 388 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~ 467 (539)
T TIGR03389 388 DFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAK 467 (539)
T ss_pred CCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccc
Confidence 7777788888766542 112223447789999999999999999753234589999999999999999999987654557
Q ss_pred CCCCCCCeeeeEEeCCCcEEEEEEEecCceeEEEeeechhhhhcccEEEEEEecCCCCCCcCCCCCCCCCCC
Q 008109 506 FNLVDPIERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKTAWLVLDGKLPNQKLLPPPADLPKC 577 (577)
Q Consensus 506 ~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 577 (577)
+|+.||++|||+.|+++||++|||++||||.|+|||||+||+..||+++|.+.++.+..+.++++|..||+|
T Consensus 468 ~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 468 FNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred cccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 899999999999999999999999999999999999999999999999999998888889999999999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=5.3e-107 Score=870.31 Aligned_cols=519 Identities=27% Similarity=0.449 Sum_probs=422.6
Q ss_pred eeeeEEEEEEEEEEEeccCc--eeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCc
Q 008109 26 LAITRHYKFNVELKNVTRLC--HTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYI 103 (577)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~g--~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~ 103 (577)
.+.+++|+|+|++..+++|| ..+.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|+.++|+||+++
T Consensus 24 ~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~- 102 (596)
T PLN00044 24 GDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGG- 102 (596)
T ss_pred CCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCC-
Confidence 46889999999999999999 556899999999999999999999999999999999999999999999999999988
Q ss_pred cccccCCCCeEEEEEEECCCceeeEEeccccccc-ccceEeEEEeCCCCCCCCCCCCC-CeeeEEeeccccccHHHHHHH
Q 008109 104 TQCPIQTGQSYIYNFTIVGQRGTLWWHAHISWLR-STLYGPIIILPKRGIPYPFAKPY-KEVPIVFGEWFKSDTEAIINQ 181 (577)
Q Consensus 104 tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~-~e~~l~~~d~~~~~~~~~~~~ 181 (577)
|||+|+||++|+|+|++++++||||||||...|+ +||+|+|||++++..+.|+...+ +|.+|+++||++.+...+ ..
T Consensus 103 TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~-~~ 181 (596)
T PLN00044 103 TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRAL-RR 181 (596)
T ss_pred CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHH-HH
Confidence 9999999999999999977999999999999998 89999999999876666665434 799999999999886654 33
Q ss_pred hhhCCCCCCCCCeEEEcCcCCCCCCCC----CCceeEEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCc
Q 008109 182 ALQTGGGPNVSDAYTFNGLPGPLYNCS----AKDTFKLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKP 257 (577)
Q Consensus 182 ~~~~~~~~~~~~~~liNG~~~~~~~~~----~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P 257 (577)
....+..+..++.++|||+....++|+ +...+.++|++||+|||||||++....+.|+|+||+|+||++||.+++|
T Consensus 182 ~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v~P 261 (596)
T PLN00044 182 ALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYTSQ 261 (596)
T ss_pred HHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCcccCc
Confidence 444454455679999999965445554 3355689999999999999999999999999999999999999999999
Q ss_pred eEEeEEEECCCceEEEEEEeCCCCCCceEEEEeeec-ccCCCCCCCCceEEEEEEecCCCccccCCCCCCCCCcCCCCCC
Q 008109 258 FETETLVITPGQTTNVLLETKPHYPSATFFMTARPY-VTGLGTFDNSTVAGILEYEKPLNFIHSGNSIKKLPLFKPILPP 336 (577)
Q Consensus 258 ~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~-~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~p~ 336 (577)
+.+++|.|++||||||+|++++++ +++|||++... ..+. .+++..+.|||+|++... . ...+ . |..+.
T Consensus 262 ~~vd~i~I~~GQRydVLV~a~q~~-~~~Y~i~a~~~~~~~~-~~~~~~~~AIl~Y~~~~~------~-~~~~-~-P~~p~ 330 (596)
T PLN00044 262 QNYTNLDIHVGQSYSFLLTMDQNA-STDYYVVASARFVDAA-VVDKLTGVAILHYSNSQG------P-ASGP-L-PDAPD 330 (596)
T ss_pred eeeeeEEEcCCceEEEEEECCCCC-CCceEEEEecccccCc-cccCcceeEEEEECCCCC------C-CCCC-C-CCCCc
Confidence 999999999999999999999975 24899998642 2222 245667899999987542 1 1111 2 44443
Q ss_pred -CCCccccccccccccccCCCCCCCCCCCCCcceEEEEeccCc-cCCCCCCcccCCCCCeeEEEecceeccCCchhhhhh
Q 008109 337 -LNDTNFVTNFVNKLRSLGSAQFPANVPQNVDKRFFFTVGLGT-SPCPRNQTCQGPNGTMFEASINNISFVMPTTALLQA 414 (577)
Q Consensus 337 -~~~~~~~~~~~~~l~~l~~~~~~~~~p~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~in~~s~~~p~~~~l~~ 414 (577)
+.++....++..+++.+..++.+...|+..+....+.+.... ..|.....| . +++.|+|||++|..|++|+|.+
T Consensus 331 ~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~-g~~~~s~Nnvsf~~p~~p~L~a 406 (596)
T PLN00044 331 DQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELI---D-GKLRATLNEISYIAPSTPLMLA 406 (596)
T ss_pred ccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeecccccccc---C-CeEEEEECcccCCCCCCcchhh
Confidence 445443333444555443333334445555554444433221 111001111 1 3689999999999999999987
Q ss_pred hhcCCCCCcccCCCCCCCCccccCCCCCCCCccccCCceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEecc
Q 008109 415 HFTGQSNGVYVPDFPTSPLIPFNYTGNPPNNTMVSSGTKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGF 494 (577)
Q Consensus 415 ~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~ 494 (577)
++.+.+ |.|..+||..||.. .....+.++.++.|++|||+|+|.. ...||||||||+|+||++|.
T Consensus 407 ~~~~~~-gv~~~~fp~~pp~~-----------~~~~~t~v~~~~~n~~VeiV~qn~~---~~~HP~HLHGh~F~Vvg~G~ 471 (596)
T PLN00044 407 QIFNVP-GVFKLDFPNHPMNR-----------LPKLDTSIINGTYKGFMEIIFQNNA---TNVQSYHLDGYAFFVVGMDY 471 (596)
T ss_pred hhccCC-CcccCCCCCCCCcc-----------ccccCceEEEcCCCCEEEEEEeCCC---CCCCCeeEcCccEEEEeecC
Confidence 777665 88888898887741 1223578899999999999999963 36899999999999999999
Q ss_pred CcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEecCceeEEEeeechhhhhcccEEEEEEecCCCC-CCcCCCCCCC
Q 008109 495 GNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKTAWLVLDGKLP-NQKLLPPPAD 573 (577)
Q Consensus 495 g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~-~~~~~~~p~~ 573 (577)
|.|++. ++..+|+.||++||||.|+++||++|||++||||+|+|||||+.|+..||.+.|.|+++.+. .+++++||.+
T Consensus 472 G~~~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~ 550 (596)
T PLN00044 472 GLWTDN-SRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDN 550 (596)
T ss_pred CCCCCC-cccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcc
Confidence 999965 45689999999999999999999999999999999999999999999999999999999876 8899999999
Q ss_pred CCCC
Q 008109 574 LPKC 577 (577)
Q Consensus 574 ~~~c 577 (577)
+++|
T Consensus 551 ~~~C 554 (596)
T PLN00044 551 AIFC 554 (596)
T ss_pred cCcc
Confidence 9999
No 3
>PLN02991 oxidoreductase
Probab=100.00 E-value=1.8e-104 Score=846.73 Aligned_cols=505 Identities=26% Similarity=0.432 Sum_probs=402.2
Q ss_pred ccceeeeeEEEEEEEEEEEeccCceeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCC
Q 008109 22 PESVLAITRHYKFNVELKNVTRLCHTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPA 101 (577)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~ 101 (577)
+..+.+++++|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++|+||++
T Consensus 21 ~~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~ 100 (543)
T PLN02991 21 FVAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVY 100 (543)
T ss_pred hhhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCC
Confidence 33445688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCeEEEEEEECCCceeeEEeccccccc-ccceEeEEEeCCCCCCCCCCCCCCeeeEEeeccccccHHHHHH
Q 008109 102 YITQCPIQTGQSYIYNFTIVGQRGTLWWHAHISWLR-STLYGPIIILPKRGIPYPFAKPYKEVPIVFGEWFKSDTEAIIN 180 (577)
Q Consensus 102 ~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~ 180 (577)
+ |||+|+||++|+|+|++++++||||||+|.+.|+ +||+|+|||+++++.+.|+..+|+|++|+++||++++...+..
T Consensus 101 ~-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~ 179 (543)
T PLN02991 101 G-TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRA 179 (543)
T ss_pred C-CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHH
Confidence 8 9999999999999999867899999999999888 7999999999987656666667889999999999988666433
Q ss_pred HhhhCCCCCCCCCeEEEcCcCCCCCCCCCCceeEEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEE
Q 008109 181 QALQTGGGPNVSDAYTFNGLPGPLYNCSAKDTFKLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFET 260 (577)
Q Consensus 181 ~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~ 260 (577)
. ...+..+..+|.+|||||.. .+.++|++||+|||||||++....+.|+|+||+|+||++||.+++|..+
T Consensus 180 ~-~~~~~~~~~~d~~liNG~~~---------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~ 249 (543)
T PLN02991 180 Q-LDNGGKLPLPDGILINGRGS---------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPF 249 (543)
T ss_pred H-hhcCCCCCCCCEEEEccCCC---------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceee
Confidence 3 33444455789999999963 3579999999999999999999999999999999999999999999999
Q ss_pred eEEEECCCceEEEEEEeCCCCCCceEEEEeeecccCCCCCCCCceEEEEEEecCCCccccCCCCCCCCCcCCCCCCCCCc
Q 008109 261 ETLVITPGQTTNVLLETKPHYPSATFFMTARPYVTGLGTFDNSTVAGILEYEKPLNFIHSGNSIKKLPLFKPILPPLNDT 340 (577)
Q Consensus 261 d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~p~~~~~ 340 (577)
++|.|++||||||+|+++++. |+|||++...... ......|||+|++... . ...+ . |..|.....
T Consensus 250 ~~l~i~~GQRydvlv~a~~~~--~~y~i~~~~~~~~----~~~~~~AIl~Y~g~~~------~-~~~~-~-p~~p~~~~~ 314 (543)
T PLN02991 250 SSLDVHVGQSYSVLITADQPA--KDYYIVVSSRFTS----KILITTGVLHYSNSAG------P-VSGP-I-PDGPIQLSW 314 (543)
T ss_pred eEEEEcCCcEEEEEEECCCCC--CcEEEEEeeccCC----CCcceEEEEEeCCCCC------C-CCCC-C-CCCCccccc
Confidence 999999999999999999986 9999998763321 2346789999987642 1 0001 1 211111100
Q ss_pred c--ccccccccccccCCCCCCCCCCCCCcceEEEEeccCc-cCCCCCCcccCCCCCeeEEEecceeccCCchhhhhhhhc
Q 008109 341 N--FVTNFVNKLRSLGSAQFPANVPQNVDKRFFFTVGLGT-SPCPRNQTCQGPNGTMFEASINNISFVMPTTALLQAHFT 417 (577)
Q Consensus 341 ~--~~~~~~~~l~~l~~~~~~~~~p~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~in~~s~~~p~~~~l~~~~~ 417 (577)
. ........+.+. .+...|...+....+.+.... ..+ ....+ + +++.|+|||++|..|++|+|.+++.
T Consensus 315 ~~~~~~~~~~~l~p~----~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~---~-g~~~~~iN~~s~~~p~~p~L~~~~~ 385 (543)
T PLN02991 315 SFDQARAIKTNLTAS----GPRPNPQGSYHYGKINITRTIRLAN-SAGNI---E-GKQRYAVNSASFYPADTPLKLADYF 385 (543)
T ss_pred cccchhhhhhcccCC----CCCCCCCccccccccccceeEEEee-ccccc---C-ceEEEEECCCccCCCCCChhhhhhh
Confidence 0 000111222221 112222222211111111000 000 00011 2 3578999999999999999888777
Q ss_pred CCCCCcccCC-CCCCCCccccCCCCCCCCccccCCceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCc
Q 008109 418 GQSNGVYVPD-FPTSPLIPFNYTGNPPNNTMVSSGTKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGN 496 (577)
Q Consensus 418 ~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~ 496 (577)
+++ |.|..+ |+..++.. .....+.++.++.|++|||+|+|.. ...||||||||+||||++|.|.
T Consensus 386 ~~~-g~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~ 450 (543)
T PLN02991 386 KIA-GVYNPGSIPDQPTNG-----------AIFPVTSVMQTDYKAFVEIVFENWE---DIVQTWHLDGYSFYVVGMELGK 450 (543)
T ss_pred ccc-CccccccccccCCCC-----------ccccCCcEEEcCCCCEEEEEEeCCC---CCCCCeeeCCcceEEEEeCCCC
Confidence 554 776654 44444321 1223467889999999999999964 3689999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEecCceeEEEeeechhhhhcccEEEEEEecCCCCCCcCCCCCCCCCC
Q 008109 497 FDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKTAWLVLDGKLPNQKLLPPPADLPK 576 (577)
Q Consensus 497 ~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~ 576 (577)
|++. ....+|+.||++||||.|+++||++|||++||||+|+|||||..|+..||..++.|+++.+..+.+++||.++++
T Consensus 451 f~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~ 529 (543)
T PLN02991 451 WSAA-SRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALL 529 (543)
T ss_pred CCcc-cccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCc
Confidence 9976 456799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 008109 577 C 577 (577)
Q Consensus 577 c 577 (577)
|
T Consensus 530 C 530 (543)
T PLN02991 530 C 530 (543)
T ss_pred c
Confidence 9
No 4
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=6.8e-104 Score=847.81 Aligned_cols=508 Identities=25% Similarity=0.439 Sum_probs=401.3
Q ss_pred eeeeeEEEEEEEEEEEeccCceeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCcc
Q 008109 25 VLAITRHYKFNVELKNVTRLCHTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYIT 104 (577)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~t 104 (577)
+.+++++|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|..++|+||+|+ |
T Consensus 23 ~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~-T 101 (552)
T PLN02354 23 AEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPG-T 101 (552)
T ss_pred ccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcC-C
Confidence 346789999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ccccCCCCeEEEEEEECCCceeeEEeccccccc-ccceEeEEEeCCCCCCCCCCCCCCeeeEEeeccccccHHHHHHHhh
Q 008109 105 QCPIQTGQSYIYNFTIVGQRGTLWWHAHISWLR-STLYGPIIILPKRGIPYPFAKPYKEVPIVFGEWFKSDTEAIINQAL 183 (577)
Q Consensus 105 q~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 183 (577)
||+|+||++|+|+|++.+++||||||||...|+ +||+|+|||+++...+.++..++.|++|+++||+++....+. ...
T Consensus 102 QcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~-~~~ 180 (552)
T PLN02354 102 NCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALK-KFL 180 (552)
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHH-HHH
Confidence 999999999999999867899999999999998 899999999998765666666788999999999998866543 333
Q ss_pred hCCCCCCCCCeEEEcCcCCCCCCCCCCceeEEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEE
Q 008109 184 QTGGGPNVSDAYTFNGLPGPLYNCSAKDTFKLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETL 263 (577)
Q Consensus 184 ~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l 263 (577)
..+..+..++.+||||+....+. ...+.++|++||+|||||||++....+.|+|+||+|+||++||++++|..+++|
T Consensus 181 ~~g~~~~~~d~~liNG~~~~~~~---~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l 257 (552)
T PLN02354 181 DSGRTLGRPDGVLINGKSGKGDG---KDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSL 257 (552)
T ss_pred hcCCCCCCCCeEEEeCCcCCCCC---CCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeEE
Confidence 34444446799999999754322 135789999999999999999999999999999999999999999999999999
Q ss_pred EECCCceEEEEEEeCCCCCCceEEEEeeecccCCCCCCCCceEEEEEEecCCCccccCCCCCCCCCcCCCCCC-CC-Ccc
Q 008109 264 VITPGQTTNVLLETKPHYPSATFFMTARPYVTGLGTFDNSTVAGILEYEKPLNFIHSGNSIKKLPLFKPILPP-LN-DTN 341 (577)
Q Consensus 264 ~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~p~-~~-~~~ 341 (577)
.|++||||||+|++++++ |+|||++...... ......|||+|++... ...+.. |..+. +. ...
T Consensus 258 ~i~~GqRydVlv~a~~~~--g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~--------~~~~~~-p~~~~~~~~~~~ 322 (552)
T PLN02354 258 DVHVGQCFSVLVTANQAP--KDYYMVASTRFLK----KVLTTTGIIRYEGGKG--------PASPEL-PEAPVGWAWSLN 322 (552)
T ss_pred EEccCceEEEEEECCCCC--CcEEEEEeccccC----CCccEEEEEEECCCCC--------CCCCCC-CCCCcccccchh
Confidence 999999999999999876 9999998742221 2356799999987642 111111 21111 00 000
Q ss_pred ccccccccccccCCCCCCCCC----CCCCcceEEEEeccCccCCCCCCcccCCCCCeeEEEecceeccCCchhhhhhhhc
Q 008109 342 FVTNFVNKLRSLGSAQFPANV----PQNVDKRFFFTVGLGTSPCPRNQTCQGPNGTMFEASINNISFVMPTTALLQAHFT 417 (577)
Q Consensus 342 ~~~~~~~~l~~l~~~~~~~~~----p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~s~~~p~~~~l~~~~~ 417 (577)
....+...+.+....+.+... ....++.+.+...+. .+ + +...|++||++|..|.+|+|.+.+.
T Consensus 323 ~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~-g~~~~~iNn~s~~~p~~P~L~~~~~ 390 (552)
T PLN02354 323 QFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSAS--------KV---D-GKLRYALNGVSHVDPETPLKLAEYF 390 (552)
T ss_pred hhhhhhhcccccccCCCCCCccccccccccceEEEecccc--------cC---C-ceEEEEECCccCCCCCCChHHhhhh
Confidence 000111112211111111000 011222232322110 11 2 3578999999999999998887765
Q ss_pred CCCCCcccCC-CCCCCCccccCCCCCCCCccccCCceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCc
Q 008109 418 GQSNGVYVPD-FPTSPLIPFNYTGNPPNNTMVSSGTKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGN 496 (577)
Q Consensus 418 ~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~ 496 (577)
++..|.++.+ ++..+|..++ ....++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.
T Consensus 391 ~~~~g~~~~~~~~~~pp~~~~---------~~~~~~~v~~~~~~~~VeiVi~n~~---~~~HP~HLHGh~F~Vlg~G~G~ 458 (552)
T PLN02354 391 GVADKVFKYDTIKDNPPAKIT---------KIKIQPNVLNITFRTFVEIIFENHE---KSMQSWHLDGYSFFAVAVEPGT 458 (552)
T ss_pred cccCCccccCccccCCccccC---------ccccCCeeEEcCCCCEEEEEEeCCC---CCCCCCcCCCccEEEEeecCCC
Confidence 5544665533 3444443211 0233567889999999999999964 4689999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEecCceeEEEeeechhhhhcccEEEEEEecCCCCCCcCCCCCCCCCC
Q 008109 497 FDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKTAWLVLDGKLPNQKLLPPPADLPK 576 (577)
Q Consensus 497 ~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~ 576 (577)
|++.. ...+|+.||++|||+.|+++||++|||++||||+|+|||||..|+..||.+.|.|.++.+..++++++|.+.+.
T Consensus 459 ~~~~~-~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~ 537 (552)
T PLN02354 459 WTPEK-RKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALL 537 (552)
T ss_pred CCccc-cccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCccccc
Confidence 98753 56789999999999999999999999999999999999999999999999999999988888889889999999
Q ss_pred C
Q 008109 577 C 577 (577)
Q Consensus 577 c 577 (577)
|
T Consensus 538 C 538 (552)
T PLN02354 538 C 538 (552)
T ss_pred c
Confidence 9
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=7.7e-104 Score=843.32 Aligned_cols=507 Identities=25% Similarity=0.406 Sum_probs=408.2
Q ss_pred eeeeEEEEEEEEEEEeccCceeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccc
Q 008109 26 LAITRHYKFNVELKNVTRLCHTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQ 105 (577)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq 105 (577)
+.++++|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|+.++|+||+++ +|
T Consensus 13 ~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~-tq 91 (536)
T PLN02792 13 ADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG-TT 91 (536)
T ss_pred cCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC-Cc
Confidence 44667999999999999999999999999999999999999999999999999999999999999999999999988 99
Q ss_pred cccCCCCeEEEEEEECCCceeeEEeccccccc-ccceEeEEEeCCCCCCCCCCCCCCeeeEEeeccccccHHHHHHHhhh
Q 008109 106 CPIQTGQSYIYNFTIVGQRGTLWWHAHISWLR-STLYGPIIILPKRGIPYPFAKPYKEVPIVFGEWFKSDTEAIINQALQ 184 (577)
Q Consensus 106 ~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 184 (577)
|+|+||++|+|+|++++++||||||||...|+ +||+|+|||+++++.+.+++.+|.|++|+++||++.+...+. ....
T Consensus 92 cPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~-~~~~ 170 (536)
T PLN02792 92 CPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLK-KILD 170 (536)
T ss_pred CccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHH-HHhh
Confidence 99999999999999877899999999999888 899999999987655556666789999999999998866543 3333
Q ss_pred CCCC-CCCCCeEEEcCcCCCCCCCCCCceeEEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEE
Q 008109 185 TGGG-PNVSDAYTFNGLPGPLYNCSAKDTFKLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETL 263 (577)
Q Consensus 185 ~~~~-~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l 263 (577)
.+.. +..++.+||||+... ..+.++|++||+|||||||+|....+.|+|+||+|+||++||++++|..+++|
T Consensus 171 ~g~~~~~~~d~~liNG~~~~-------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l 243 (536)
T PLN02792 171 GGRKLPLMPDGVMINGQGVS-------YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSL 243 (536)
T ss_pred ccCcCCCCCCEEEEeccCCC-------CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEE
Confidence 3332 347899999999643 23679999999999999999999999999999999999999999999999999
Q ss_pred EECCCceEEEEEEeCCCCCCceEEEEeeecccCCCCCCCCceEEEEEEecCCCccccCCCCCCCCCcCCCCCCCCCcccc
Q 008109 264 VITPGQTTNVLLETKPHYPSATFFMTARPYVTGLGTFDNSTVAGILEYEKPLNFIHSGNSIKKLPLFKPILPPLNDTNFV 343 (577)
Q Consensus 264 ~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~ 343 (577)
.|+|||||||+|++++++ |+|||++.+...+ .+....|||+|++... . . +.. |..|.+.+....
T Consensus 244 ~i~~GqRydVlV~a~~~~--g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~------~-~--~~~-p~~p~~~~~~~~ 307 (536)
T PLN02792 244 DIHVGQTYSVLVTMDQPP--QNYSIVVSTRFIA----AKVLVSSTLHYSNSKG------H-K--IIH-ARQPDPDDLEWS 307 (536)
T ss_pred EEccCceEEEEEEcCCCC--ceEEEEEEeccCC----CCCceEEEEEECCCCC------C-C--CCC-CCCCCcCCcccc
Confidence 999999999999999875 9999999864322 2346789999987642 1 0 111 223333333322
Q ss_pred ccccccccccCCCCCCCCCCCCCcceEEEEeccCc-cCCCCCCcccCCCCCeeEEEecceeccCCchhhhhhhhcCCCCC
Q 008109 344 TNFVNKLRSLGSAQFPANVPQNVDKRFFFTVGLGT-SPCPRNQTCQGPNGTMFEASINNISFVMPTTALLQAHFTGQSNG 422 (577)
Q Consensus 344 ~~~~~~l~~l~~~~~~~~~p~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~in~~s~~~p~~~~l~~~~~~~~~g 422 (577)
..+...++.+..++.+...|+..++...+.+.... ..+ .... ..+++.|++||++|..|++|+|.+++.+++ |
T Consensus 308 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~-g 381 (536)
T PLN02792 308 IKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILES-SAAL----VKRKQRYAINGVSFVPSDTPLKLADHFKIK-G 381 (536)
T ss_pred ccchhhhhhccCCCCCCCCCCcccccceeccceeEEecc-cccc----cCceeEEEECCcccCCCCCchhhhhhhccC-C
Confidence 22222223322222234445443332222211111 000 0001 123578999999999999999988777665 6
Q ss_pred cccC-CCCCCCCccccCCCCCCCCccccCCceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCC
Q 008109 423 VYVP-DFPTSPLIPFNYTGNPPNNTMVSSGTKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNK 501 (577)
Q Consensus 423 ~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~ 501 (577)
.+.. +|+..||...+ ....+.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++.
T Consensus 382 ~~~~~~~~~~p~~~~~----------~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~- 447 (536)
T PLN02792 382 VFKVGSIPDKPRRGGG----------MRLDTSVMGAHHNAFLEIIFQNRE---KIVQSYHLDGYNFWVVGINKGIWSRA- 447 (536)
T ss_pred CcCcccCccCCcccCC----------CccCceEEEcCCCCEEEEEEECCC---CCCCCeeeCCCceEEEeecCCCCCcc-
Confidence 6655 37776664211 123578899999999999999964 35899999999999999999999874
Q ss_pred CCCCCCCCCCCeeeeEEeCCCcEEEEEEEecCceeEEEeeechhhhhcccEEEEEEecCCCCCCcCCCCCCCCCCC
Q 008109 502 DPAKFNLVDPIERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKTAWLVLDGKLPNQKLLPPPADLPKC 577 (577)
Q Consensus 502 ~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 577 (577)
....+|+.||++||||.|+++||++|||++||||+|+||||+..|+..||..+|.|+++.+..+++++||+++++|
T Consensus 448 ~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 448 SRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred cccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcc
Confidence 4567999999999999999999999999999999999999999999999999999999999999999999999999
No 6
>PLN02835 oxidoreductase
Probab=100.00 E-value=1.4e-103 Score=844.50 Aligned_cols=497 Identities=24% Similarity=0.430 Sum_probs=392.8
Q ss_pred eeeeEEEEEEEEEEEeccCceeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccc
Q 008109 26 LAITRHYKFNVELKNVTRLCHTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQ 105 (577)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq 105 (577)
.|.+|+|+|+|++..++++|+++.+|+|||++|||+||+++||+|+|+|+|+|+++++|||||++++.++|+||+++ ||
T Consensus 26 ~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~-tQ 104 (539)
T PLN02835 26 EDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLG-TN 104 (539)
T ss_pred cCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCcc-Cc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cccCCCCeEEEEEEECCCceeeEEeccccccc-ccceEeEEEeCCCCCCCCCCCCCCeeeEEeeccccccHHHHHHHhhh
Q 008109 106 CPIQTGQSYIYNFTIVGQRGTLWWHAHISWLR-STLYGPIIILPKRGIPYPFAKPYKEVPIVFGEWFKSDTEAIINQALQ 184 (577)
Q Consensus 106 ~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 184 (577)
|+|+||++|+|+|++++++||||||||...|+ +||+|+|||+++.+.+.++..+|+|++|+++||++.+...+.. .+.
T Consensus 105 ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~-~~~ 183 (539)
T PLN02835 105 CPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQ-RLD 183 (539)
T ss_pred CCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHH-Hhh
Confidence 99999999999999867899999999999988 8999999998765545566677999999999999998766433 333
Q ss_pred CCCCCCCCCeEEEcCcCCCCCCCCCCceeEEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEE
Q 008109 185 TGGGPNVSDAYTFNGLPGPLYNCSAKDTFKLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLV 264 (577)
Q Consensus 185 ~~~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~ 264 (577)
.+.....++.+||||+.. +.++|++||+|||||||+|....+.|+|+||+|+||++||.+++|..+++|.
T Consensus 184 ~g~~~~~~d~~liNG~~~----------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~ 253 (539)
T PLN02835 184 SGKVLPFPDGVLINGQTQ----------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLD 253 (539)
T ss_pred cCCCCCCCceEEEccccC----------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEEE
Confidence 444455789999999964 5799999999999999999999999999999999999999999999999999
Q ss_pred ECCCceEEEEEEeCCCCCCceEEEEeeecccCCCCCCCCceEEEEEEecCCCccccCCCCCCCCCcCCCCCCCC---Ccc
Q 008109 265 ITPGQTTNVLLETKPHYPSATFFMTARPYVTGLGTFDNSTVAGILEYEKPLNFIHSGNSIKKLPLFKPILPPLN---DTN 341 (577)
Q Consensus 265 l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~p~~~---~~~ 341 (577)
|++||||||+|++++++ |+|||++.....+ ......|||+|++... ...... |..+... +..
T Consensus 254 i~~GqRydvlv~~~~~~--g~y~i~a~~~~~~----~~~~~~ail~Y~~~~~--------~~~~~~-p~~p~~~~~~~~~ 318 (539)
T PLN02835 254 VHVGQSVAVLVTLNQSP--KDYYIVASTRFTR----QILTATAVLHYSNSRT--------PASGPL-PALPSGELHWSMR 318 (539)
T ss_pred ECcCceEEEEEEcCCCC--CcEEEEEEccccC----CCcceEEEEEECCCCC--------CCCCCC-CCCCccccccccc
Confidence 99999999999999875 9999998642221 2356799999987542 101111 2222110 000
Q ss_pred ccccccccccccCCCCCCCC----CCCCCcceEEEEeccCccCCCCCCcccCCCCCeeEEEecceeccCCchhhhhhhhc
Q 008109 342 FVTNFVNKLRSLGSAQFPAN----VPQNVDKRFFFTVGLGTSPCPRNQTCQGPNGTMFEASINNISFVMPTTALLQAHFT 417 (577)
Q Consensus 342 ~~~~~~~~l~~l~~~~~~~~----~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~s~~~p~~~~l~~~~~ 417 (577)
........+.+....+.+.. .....++++.+...+. . .+ ++..|++||++|..|.+|+|.+.+.
T Consensus 319 ~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~-g~~~w~iN~~s~~~p~~P~L~~~~~ 386 (539)
T PLN02835 319 QARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAP--------L---IN-GKQRYAVNGVSYVNSDTPLKLADYF 386 (539)
T ss_pred hhhccccccCccccCCCCCccccccccCCCceEEEecccc--------c---cC-CeEEEEECCcccCCCCCChhhhhhh
Confidence 00000011111111110000 0011133333322110 0 12 2468999999999888888776665
Q ss_pred CCCCCcccCCC-CCCCCccccCCCCCCCCccccCCceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCc
Q 008109 418 GQSNGVYVPDF-PTSPLIPFNYTGNPPNNTMVSSGTKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGN 496 (577)
Q Consensus 418 ~~~~g~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~ 496 (577)
+.. |.|+... ...++ +.....++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.
T Consensus 387 ~~~-~~~~~~~~~~~~~-----------~~~~~~~t~~~~~~~~~~Veivi~N~~---~~~HP~HLHGh~F~Vlg~G~g~ 451 (539)
T PLN02835 387 GIP-GVFSVNSIQSLPS-----------GGPAFVATSVMQTSLHDFLEVVFQNNE---KTMQSWHLDGYDFWVVGYGSGQ 451 (539)
T ss_pred cCC-CccccCccccCCC-----------CCccccCCeEEEcCCCCEEEEEEECCC---CCCCCCCCCCccEEEEeccCCC
Confidence 432 4444321 11111 011234688899999999999999964 4689999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEecCceeEEEeeechhhhhcccEEEEEEecCCCCCCcCCCCCCCCCC
Q 008109 497 FDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKTAWLVLDGKLPNQKLLPPPADLPK 576 (577)
Q Consensus 497 ~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~ 576 (577)
|++.. ...+|+.||++||||.|+++||++|||++||||.|+|||||++|+..||+.+|.|+++.+..+.+++||.++|+
T Consensus 452 ~~~~~-~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~ 530 (539)
T PLN02835 452 WTPAK-RSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALL 530 (539)
T ss_pred CCccc-ccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCccccc
Confidence 98653 45678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 008109 577 C 577 (577)
Q Consensus 577 c 577 (577)
|
T Consensus 531 C 531 (539)
T PLN02835 531 C 531 (539)
T ss_pred c
Confidence 9
No 7
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=9.3e-103 Score=835.19 Aligned_cols=501 Identities=27% Similarity=0.453 Sum_probs=391.5
Q ss_pred eeeeEEEEEEEEEEEeccCceeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccc
Q 008109 26 LAITRHYKFNVELKNVTRLCHTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQ 105 (577)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq 105 (577)
.|++|+|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|+|+++|+|||||+++..++|+||+|+ ||
T Consensus 23 ~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~g-tQ 101 (545)
T PLN02168 23 FAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRG-TN 101 (545)
T ss_pred cccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCC-Cc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cccCCCCeEEEEEEECCCceeeEEeccccccc-ccceEeEEEeCCCCCCCCCCCCCCeeeEEeeccccccHHHHHHHhhh
Q 008109 106 CPIQTGQSYIYNFTIVGQRGTLWWHAHISWLR-STLYGPIIILPKRGIPYPFAKPYKEVPIVFGEWFKSDTEAIINQALQ 184 (577)
Q Consensus 106 ~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 184 (577)
|+|+||++|+|+|++++++||||||||.+.|+ +||+|+|||+++++.+.++..++.|++|+++||++.+...+. ....
T Consensus 102 cpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~-~~~~ 180 (545)
T PLN02168 102 CPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMR-ASLD 180 (545)
T ss_pred CCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHH-hhhh
Confidence 99999999999999866899999999999988 899999999998776666667789999999999998765432 2233
Q ss_pred CCCCCCCCCeEEEcCcCCCCCCCCCCceeEEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEE
Q 008109 185 TGGGPNVSDAYTFNGLPGPLYNCSAKDTFKLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLV 264 (577)
Q Consensus 185 ~~~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~ 264 (577)
.+.....++.+||||+.. ..+.++|++||+|||||||++....+.|+|+||+|+||++||.+++|..+++|.
T Consensus 181 ~g~~~~~~d~~liNG~~~--------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~ 252 (545)
T PLN02168 181 NGHSLPNPDGILFNGRGP--------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLD 252 (545)
T ss_pred cCCCCCCCCEEEEeccCC--------CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEE
Confidence 333344679999999963 236899999999999999999999999999999999999999999999999999
Q ss_pred ECCCceEEEEEEeCCCCCC--ceEEEEeeecccCCCCCCCCceEEEEEEecCCCccccCCCCCCCCCcCCCCCCCCCccc
Q 008109 265 ITPGQTTNVLLETKPHYPS--ATFFMTARPYVTGLGTFDNSTVAGILEYEKPLNFIHSGNSIKKLPLFKPILPPLNDTNF 342 (577)
Q Consensus 265 l~pgeR~dv~v~~~~~~~~--g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~ 342 (577)
|++||||||+|++++.+.| ++|||++.....+ ....+.|||+|+++.. . ...+ . |..|...+...
T Consensus 253 i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~----~~~~~~ail~Y~~~~~------~-~~~p-~-p~~p~~~~~~~ 319 (545)
T PLN02168 253 IHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTD----AYLGGVALIRYPNSPL------D-PVGP-L-PLAPALHDYFS 319 (545)
T ss_pred EcCCceEEEEEEcCCCCCCCcceEEEEEEecccC----CCcceEEEEEECCCCC------C-CCCC-C-CCCCccccccc
Confidence 9999999999999875433 4899999863322 2356789999987542 1 1011 1 22233333211
Q ss_pred cccccccccccCCCCCCCCCCCCC--------cceEEEEeccCccCCCCCCcccCCCCCeeEEEecceeccCCchhhhhh
Q 008109 343 VTNFVNKLRSLGSAQFPANVPQNV--------DKRFFFTVGLGTSPCPRNQTCQGPNGTMFEASINNISFVMPTTALLQA 414 (577)
Q Consensus 343 ~~~~~~~l~~l~~~~~~~~~p~~~--------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~s~~~p~~~~l~~ 414 (577)
..+...+++....+..+...|... ++.+.+... .. . ..++..|++||++|..|++|++.+
T Consensus 320 ~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~------~----~~g~~~~~iN~~s~~~p~~P~l~~ 387 (545)
T PLN02168 320 SVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHND--VM------L----SSGKLRYTINGVSFVYPGTPLKLV 387 (545)
T ss_pred ccchhhhhhhcCCCCCCCCCCcccccccccccceeEEeccc--cc------c----cCceEEEEECCCccCCCCCchhhh
Confidence 111111122111111111222211 121111110 00 0 123578999999999999888776
Q ss_pred hhcCCCCCcccC-CCCCCCCccccCCCCCCCCccccCCceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEec
Q 008109 415 HFTGQSNGVYVP-DFPTSPLIPFNYTGNPPNNTMVSSGTKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQG 493 (577)
Q Consensus 415 ~~~~~~~g~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g 493 (577)
.+..++ +.+.. +|+..+|.. ....++.++.++.|++|||+|+|.. ...||||||||+||||++|
T Consensus 388 ~~~~~~-~~~~~~~~~~~p~~~-----------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~g 452 (545)
T PLN02168 388 DHFQLN-DTIIPGMFPVYPSNK-----------TPTLGTSVVDIHYKDFYHIVFQNPL---FSLESYHIDGYNFFVVGYG 452 (545)
T ss_pred hhcccc-cccccCCCccCCCcC-----------ccccCceEEEecCCCEEEEEEeCCC---CCCCCeeeCCCceEEEECC
Confidence 655433 22222 244444310 0122467889999999999999964 3689999999999999999
Q ss_pred cCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEecCceeEEEeeechhhhhcccEEEEEEecCCC------CCCcC
Q 008109 494 FGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKTAWLVLDGKL------PNQKL 567 (577)
Q Consensus 494 ~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~------~~~~~ 567 (577)
.|.|++.. ...+|+.||++|||+.|+++||++|||++||||.|+|||||.+|...||.+.+.|+++.+ ..+.+
T Consensus 453 ~g~~~~~~-~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~ 531 (545)
T PLN02168 453 FGAWSESK-KAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDE 531 (545)
T ss_pred CCCCCccc-cccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccc
Confidence 99998653 457899999999999999999999999999999999999999999999999998865544 35678
Q ss_pred CCCCCCCCCC
Q 008109 568 LPPPADLPKC 577 (577)
Q Consensus 568 ~~~p~~~~~c 577 (577)
++||+++++|
T Consensus 532 ~~~P~~~~~c 541 (545)
T PLN02168 532 NPIPGNVIRC 541 (545)
T ss_pred cCCChhhccc
Confidence 8999999999
No 8
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.4e-102 Score=822.67 Aligned_cols=533 Identities=48% Similarity=0.877 Sum_probs=470.2
Q ss_pred HHhcccceeeeeEEEEEEEEEEEeccCceeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCC
Q 008109 18 LCLLPESVLAITRHYKFNVELKNVTRLCHTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWA 97 (577)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~ 97 (577)
++++...+.+..+.|+|++++..++++|.++.++++||++|||+|++++||+|.|+|.|+++++++|||||+++..+.|+
T Consensus 17 ~~~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~ 96 (563)
T KOG1263|consen 17 LLVFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQ 96 (563)
T ss_pred HHHHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccc
Confidence 34556777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCCeEEEEEEECCCceeeEEeccccccc-ccceEeEEEeCCCCCCCCCCCCCCeeeEEeeccccc-cH
Q 008109 98 DGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHISWLR-STLYGPIIILPKRGIPYPFAKPYKEVPIVFGEWFKS-DT 175 (577)
Q Consensus 98 DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~-~~ 175 (577)
|| +.+|||||+||++|+|+|+++++.||||||+|...++ +|++|+|||.++...+.|++.+|+|++|+++||+.+ +.
T Consensus 97 DG-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~ 175 (563)
T KOG1263|consen 97 DG-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNH 175 (563)
T ss_pred cC-CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCH
Confidence 99 8999999999999999999988999999999999999 799999999999988888888999999999999996 77
Q ss_pred HHHHHHhhhCCCCCCCCCeEEEcCcCCCCCCCCCCceeEEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCccc
Q 008109 176 EAIINQALQTGGGPNVSDAYTFNGLPGPLYNCSAKDTFKLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYV 255 (577)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v 255 (577)
..+.......+..+..+|..+|||+.+..++| .+.++|++||+|||||+|+|....+.|+|++|+|+||++||.++
T Consensus 176 ~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~ 251 (563)
T KOG1263|consen 176 KNLKNFLDRTGALPNPSDGVLINGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYT 251 (563)
T ss_pred HHHHHhhccCCCCCCCCCceEECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEE
Confidence 77666666666666668999999999999999 68999999999999999999999999999999999999999999
Q ss_pred CceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeeecccCCC-CCCCCceEEEEEEecCCCccccCCCCCCC-CCcCCC
Q 008109 256 KPFETETLVITPGQTTNVLLETKPHYPSATFFMTARPYVTGLG-TFDNSTVAGILEYEKPLNFIHSGNSIKKL-PLFKPI 333 (577)
Q Consensus 256 ~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~-~~~~~~~~ail~y~~~~~~~~~~~~~~~~-~~~~p~ 333 (577)
+|..+++|.|.||||++|++++++.+ ++|+|++.++.++.. .+ +....++++|.+... ..... +.. +.
T Consensus 252 ~p~~~~~l~i~~GQ~~~vLvtadq~~--~~Y~i~~~~~~~~~~~~~-~~t~~~~l~y~~~~~------~~s~~~~~~-~~ 321 (563)
T KOG1263|consen 252 KPFTTDSLDIHPGQTYSVLLTADQSP--GDYYIAASPYFDASNVPF-NLTTTGILRYSGSTH------PASEKLPIY-PF 321 (563)
T ss_pred eeeeeceEEEcCCcEEEEEEeCCCCC--CcEEEEEEeeeccCCcce-eeeEEEEEEEeCCcc------cCcccCccc-cc
Confidence 99999999999999999999999987 799999998766532 22 678999999998432 11111 222 34
Q ss_pred CCCCCCccccccccccccccCCCCCCCCCCCCCcceEEEEeccCccCCCCCCcccCCCCCeeEEEecceeccCCchh-hh
Q 008109 334 LPPLNDTNFVTNFVNKLRSLGSAQFPANVPQNVDKRFFFTVGLGTSPCPRNQTCQGPNGTMFEASINNISFVMPTTA-LL 412 (577)
Q Consensus 334 ~p~~~~~~~~~~~~~~l~~l~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~s~~~p~~~-~l 412 (577)
++...+......+...++.+....++.+.|+..++....+++.+...|+... .++++..++||+++|..|++| ++
T Consensus 322 ~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~siN~isf~~P~tp~~l 397 (563)
T KOG1263|consen 322 LPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN----KNNGKLRASINNISFVTPKTPSLL 397 (563)
T ss_pred CCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCC----CCCcEEEEEEcceEEECCCCchhh
Confidence 5555566666666777888877777888999999988888887776664221 356788999999999999875 55
Q ss_pred hhhhcCCCCCcccCCCCCCCCccccCCCCCCCCccccCCceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEe
Q 008109 413 QAHFTGQSNGVYVPDFPTSPLIPFNYTGNPPNNTMVSSGTKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQ 492 (577)
Q Consensus 413 ~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~ 492 (577)
..++..+. |.+..+||..|+..|++++ .+.++.++.++++++||++++|.+......||||||||+|||++.
T Consensus 398 ~~~~~~~~-~~~~~d~p~~P~~~~~~~~-------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~ 469 (563)
T KOG1263|consen 398 AAYFKNIP-GYFTNDFPDKPPIKFDYTG-------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGY 469 (563)
T ss_pred hhhhccCC-ccccCccCCCCccccCCcc-------ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEe
Confidence 55555554 8888899999988887765 456899999999999999999998777788999999999999999
Q ss_pred ccCcCCCCCCC-CCCCCCCCCeeeeEEeCCCcEEEEEEEecCceeEEEeeechhhhhcccEEEEEEecCCCCCCcCCCCC
Q 008109 493 GFGNFDPNKDP-AKFNLVDPIERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKTAWLVLDGKLPNQKLLPPP 571 (577)
Q Consensus 493 g~g~~~~~~~~-~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p 571 (577)
|.|+|++..+. ..+|+.+|+.||||.|+||||++|||.+||||+|+|||||.+|...||.++|+|.++.+..+++.+||
T Consensus 470 g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P 549 (563)
T KOG1263|consen 470 GFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPP 549 (563)
T ss_pred cccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCC
Confidence 99999995455 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 008109 572 ADLPKC 577 (577)
Q Consensus 572 ~~~~~c 577 (577)
.++++|
T Consensus 550 ~~~~~c 555 (563)
T KOG1263|consen 550 KNLPKC 555 (563)
T ss_pred CCcccc
Confidence 999999
No 9
>PLN02604 oxidoreductase
Probab=100.00 E-value=1.6e-97 Score=806.63 Aligned_cols=532 Identities=32% Similarity=0.554 Sum_probs=400.1
Q ss_pred HHHHHHHHHHHHhc-ccceeeeeEEEEEEEEEEEeccCceeeEEEEECCCCCCCeEEEecCCEEEEEEEeCC-CCceeee
Q 008109 8 MGFVLLTVLSLCLL-PESVLAITRHYKFNVELKNVTRLCHTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHV-QHNISIH 85 (577)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~~iH 85 (577)
|.|+-++|+++.++ ...+.+++|+|+|+|++..+++||+.+.+|+|||++|||+|++++||+|+|+|+|++ .++++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH 81 (566)
T PLN02604 2 MRFLALFFLLFSVLNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIH 81 (566)
T ss_pred hhhhhHHHHHHHHHHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEE
Confidence 34444444444444 444567999999999999999999999999999999999999999999999999998 5899999
Q ss_pred EcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEeccccccc-ccceEeEEEeCCCCCCCCCCCCCCeee
Q 008109 86 WHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHISWLR-STLYGPIIILPKRGIPYPFAKPYKEVP 164 (577)
Q Consensus 86 ~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~ 164 (577)
|||+++.+.+|+||+++++||+|+||++++|+|++ +++||||||||...|+ +||+|+|||+++.+...++ .+|.|.+
T Consensus 82 ~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~ 159 (566)
T PLN02604 82 WHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRS 159 (566)
T ss_pred eCCCCCCCCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceE
Confidence 99999999999999999999999999999999998 8999999999998888 8999999999987554555 3688999
Q ss_pred EEeeccccccHHHHHHHhhhC-CCCCCCCCeEEEcCcCCCCCCCCC-----------------CceeEEEEecCCEEEEE
Q 008109 165 IVFGEWFKSDTEAIINQALQT-GGGPNVSDAYTFNGLPGPLYNCSA-----------------KDTFKLKVKSGKTYLLR 226 (577)
Q Consensus 165 l~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~liNG~~~~~~~~~~-----------------~~~~~l~v~~G~~~rlR 226 (577)
|+++||++....+........ ......++..+|||+.. +.|+. ...+.+++++||+||||
T Consensus 160 l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlR 237 (566)
T PLN02604 160 IILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGR--YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLR 237 (566)
T ss_pred EEeeccccCCHHHHHHhhccCCCccCCCCCceEEcCCCC--CCCccccCccccccccccCCCCCCceEEEecCCCEEEEE
Confidence 999999998876654432211 11123568999999963 34431 13458999999999999
Q ss_pred EEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeeecccCCCCCCCCceE
Q 008109 227 LVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARPYVTGLGTFDNSTVA 306 (577)
Q Consensus 227 liN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ 306 (577)
|||+++...+.|+|+||+|+|||+||.+++|+++++|.|++||||||+|++++.+ +++|||++.....+. +...+.
T Consensus 238 lINa~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~-~~~y~ira~~~~~~~---~~~~~~ 313 (566)
T PLN02604 238 ISSLTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDP-SRNYWVTTSVVSRNN---TTPPGL 313 (566)
T ss_pred EEeccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCC-CCCEEEEEecccCCC---CCccee
Confidence 9999999999999999999999999999999999999999999999999998864 358999987543321 235779
Q ss_pred EEEEEecCCCccccCCCCCCCCCcCCCCCCCCCccccccccccccccCCCCCCCCCCCCCcceEEEEeccCccCCCCCCc
Q 008109 307 GILEYEKPLNFIHSGNSIKKLPLFKPILPPLNDTNFVTNFVNKLRSLGSAQFPANVPQNVDKRFFFTVGLGTSPCPRNQT 386 (577)
Q Consensus 307 ail~y~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~ 386 (577)
|||+|++... . ..++..++..+.+.+..........+..+.. .+...+...++++.+......
T Consensus 314 aIL~Y~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~-------- 376 (566)
T PLN02604 314 AIFNYYPNHP------R-RSPPTVPPSGPLWNDVEPRLNQSLAIKARHG--YIHPPPLTSDRVIVLLNTQNE-------- 376 (566)
T ss_pred EEEEECCCCC------C-CCCCCCCCCCCcccccchhhcchhccccccc--CcCCCCCCCCeEEEEeccccc--------
Confidence 9999986431 0 1111111111222221111110111111111 111223344555544322111
Q ss_pred ccCCCCCeeEEEecceeccCCchhhhhhhhcCCCCCcccCCCCCCCCccccC---CCCC-CCCccccCCceEEEecCCCE
Q 008109 387 CQGPNGTMFEASINNISFVMPTTALLQAHFTGQSNGVYVPDFPTSPLIPFNY---TGNP-PNNTMVSSGTKLVVLPFNTS 462 (577)
Q Consensus 387 ~~~~~~~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~---~~~~-~~~~~~~~~~~~~~~~~g~~ 462 (577)
.++.+.|++|+++|..|..|+|...+.... |.++.+. ++..+++ +... ..+...+.++.++.++.|++
T Consensus 377 ----~~~~~~w~in~~~~~~p~~p~L~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 448 (566)
T PLN02604 377 ----VNGYRRWSVNNVSFNLPHTPYLIALKENLT-GAFDQTP---PPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNST 448 (566)
T ss_pred ----cCCeEEEEECcccCCCCCCchhHhhhhcCC-CcccCCC---CCcccccccccccCCccccccccCceEEEccCCCe
Confidence 122468999999999888887776655332 5444221 1111111 1000 01111234677899999999
Q ss_pred EEEEEeeCCCC---CCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEecCceeEEE
Q 008109 463 VELIMQDTSIL---GAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLADNPGVWFM 539 (577)
Q Consensus 463 v~~~l~N~~~~---~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~ 539 (577)
||++|+|.... ....||||||||+||||++|.|.|++......+|+.||++|||+.|+++||++|||++||||.|+|
T Consensus 449 Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~Wlf 528 (566)
T PLN02604 449 VDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAF 528 (566)
T ss_pred EEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeE
Confidence 99999996421 246899999999999999999999977666688999999999999999999999999999999999
Q ss_pred eeechhhhhcccEEEEEEecCCCCCCcCCCCCCCCCCC
Q 008109 540 HCHLEVHTSWGLKTAWLVLDGKLPNQKLLPPPADLPKC 577 (577)
Q Consensus 540 HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 577 (577)
||||+||+..||+++|.+. .+.++++|.++++|
T Consensus 529 HCHI~~Hl~~GM~~v~~e~-----~~~~~~~p~~~~~C 561 (566)
T PLN02604 529 HCHIESHFFMGMGVVFEEG-----IERVGKLPSSIMGC 561 (566)
T ss_pred eecchhHhhcCCEEEEeeC-----hhhccCCCCCcCcc
Confidence 9999999999999999653 35677889999999
No 10
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=1.1e-97 Score=805.69 Aligned_cols=528 Identities=30% Similarity=0.542 Sum_probs=389.2
Q ss_pred HHHHHHHHhcccceeeeeEEEEEEEEEEEeccCceeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCC-CceeeeEccee
Q 008109 12 LLTVLSLCLLPESVLAITRHYKFNVELKNVTRLCHTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQ-HNISIHWHGIR 90 (577)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~ 90 (577)
|-++-+..++-..+.+++++|+|+|++..+++||+++.+++|||++|||+||+++||+|+|+|+|+|+ ++++|||||++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~ 85 (574)
T PLN02191 6 WWIVTVVAVLTHTASAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIR 85 (574)
T ss_pred hhHHHHHHHHHHhhccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCC
Confidence 33444444444455578999999999999999999999999999999999999999999999999997 78999999999
Q ss_pred ccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEeccccccc-ccceEeEEEeCCCCCCCCCCCCCCeeeEEeec
Q 008109 91 QLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHISWLR-STLYGPIIILPKRGIPYPFAKPYKEVPIVFGE 169 (577)
Q Consensus 91 ~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d 169 (577)
+.+++|+||+|+++||+|+||++|+|+|++ .++||||||||...|+ +||+|+|||+++.+...++ .+|+|++|+++|
T Consensus 86 ~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~D 163 (574)
T PLN02191 86 QKGSPWADGAAGVTQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSD 163 (574)
T ss_pred CCCCccccCCCccccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeec
Confidence 999999999999999999999999999998 7999999999999888 8999999999765433233 468999999999
Q ss_pred cccccHHHHHHHhhhC-CCCCCCCCeEEEcCcCCCCCCCCC--------------------CceeEEEEecCCEEEEEEE
Q 008109 170 WFKSDTEAIINQALQT-GGGPNVSDAYTFNGLPGPLYNCSA--------------------KDTFKLKVKSGKTYLLRLV 228 (577)
Q Consensus 170 ~~~~~~~~~~~~~~~~-~~~~~~~~~~liNG~~~~~~~~~~--------------------~~~~~l~v~~G~~~rlRli 228 (577)
|++............. ......++.+||||+.. +.|+. ....+++|++||+||||||
T Consensus 164 w~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiI 241 (574)
T PLN02191 164 WWHESIPSQELGLSSKPMRWIGEAQSILINGRGQ--FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLA 241 (574)
T ss_pred cccCChHHHHHhhccCCCCcCCCCCceEECCCCC--CCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEE
Confidence 9998654332221111 11124568999999863 33421 1223699999999999999
Q ss_pred ecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeeecccCCCCCCCCceEEE
Q 008109 229 NSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARPYVTGLGTFDNSTVAGI 308 (577)
Q Consensus 229 N~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ai 308 (577)
|+|+...+.|+|+||+|+|||+||.+++|+.+++|.|++||||||+|++++.+ +++||||+.....+. ......||
T Consensus 242 Na~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~-~~~y~ira~~~~~~~---~~~~~~ai 317 (574)
T PLN02191 242 STTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDP-SQNYYISVGVRGRKP---NTTQALTI 317 (574)
T ss_pred ecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCC-CCCEEEEEEccccCC---CCCCceEE
Confidence 99999999999999999999999999999999999999999999999999864 368999997533221 22345699
Q ss_pred EEEecCCCccccCCCCCCCCCcCCCCCCCCCccccccccccccccCCCCCCCCCCCC-CcceEEEEeccCccCCCCCCcc
Q 008109 309 LEYEKPLNFIHSGNSIKKLPLFKPILPPLNDTNFVTNFVNKLRSLGSAQFPANVPQN-VDKRFFFTVGLGTSPCPRNQTC 387 (577)
Q Consensus 309 l~y~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~~~~~p~~-~d~~~~~~~~~~~~~~~~~~~~ 387 (577)
|+|++... + ..+....|..|.+.+....... ....+.....+ ..|.. .+..+.+... ..
T Consensus 318 l~Y~~~~~------~-~~p~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~-~~p~~~~~~~~~~~~~--~~-------- 377 (574)
T PLN02191 318 LNYVTAPA------S-KLPSSPPPVTPRWDDFERSKNF--SKKIFSAMGSP-SPPKKYRKRLILLNTQ--NL-------- 377 (574)
T ss_pred EEECCCCC------C-CCCCCCCCCCCcccccchhhcc--cccccccccCC-CCCCcccceEEEeccc--ce--------
Confidence 99987552 1 1011000122222222111111 11111110011 11222 2343333211 10
Q ss_pred cCCCCCeeEEEecceeccCCchhhhhhhhcCCCCCcccCCCCCCC-CccccCCCCCCCCccccCCceEEEecCCCEEEEE
Q 008109 388 QGPNGTMFEASINNISFVMPTTALLQAHFTGQSNGVYVPDFPTSP-LIPFNYTGNPPNNTMVSSGTKLVVLPFNTSVELI 466 (577)
Q Consensus 388 ~~~~~~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~ 466 (577)
..+...|++|+++|..|..|+|.+.+.+.. +.+..+.+... +..|+..+... ....+.++.++.++.|++|||+
T Consensus 378 ---~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~Vdiv 452 (574)
T PLN02191 378 ---IDGYTKWAINNVSLVTPATPYLGSVKYNLK-LGFNRKSPPRSYRMDYDIMNPPP-FPNTTTGNGIYVFPFNVTVDVI 452 (574)
T ss_pred ---eCCeEEEEECcccCcCCCcchHHHHhhccC-cccccCCCcccccccccccCCCc-cccccccceeEEecCCCEEEEE
Confidence 112357999999999888887776654432 33333332211 11222111110 0012346778999999999999
Q ss_pred EeeCCCC---CCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEecCceeEEEeeec
Q 008109 467 MQDTSIL---GAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLADNPGVWFMHCHL 543 (577)
Q Consensus 467 l~N~~~~---~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHi 543 (577)
|+|.... ....||||||||+||||++|.|.|++......+|+.||++|||+.|+++||++|||++||||.|+|||||
T Consensus 453 i~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi 532 (574)
T PLN02191 453 IQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHI 532 (574)
T ss_pred EECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCc
Confidence 9996421 2578999999999999999999999754445789999999999999999999999999999999999999
Q ss_pred hhhhhcccEEEEEEecCCCCCCcCCCCCCCCCCC
Q 008109 544 EVHTSWGLKTAWLVLDGKLPNQKLLPPPADLPKC 577 (577)
Q Consensus 544 l~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 577 (577)
+||+.+||+++|.. + .+.++.+|++++.|
T Consensus 533 ~~Hl~~Gm~~~~~e--~---~~~~~~~p~~~~~C 561 (574)
T PLN02191 533 EPHLHMGMGVVFAE--G---LNRIGKIPDEALGC 561 (574)
T ss_pred hhhhhcCCEEEEec--C---hhhccCCCcchhhh
Confidence 99999999999953 2 24455678889999
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=2.6e-96 Score=795.18 Aligned_cols=512 Identities=32% Similarity=0.566 Sum_probs=387.1
Q ss_pred eEEEEEEEEEEEeccCceeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCC-CceeeeEcceeccCCCCCCCCCCccccc
Q 008109 29 TRHYKFNVELKNVTRLCHTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQ-HNISIHWHGIRQLRSGWADGPAYITQCP 107 (577)
Q Consensus 29 ~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~tq~~ 107 (577)
+|+|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|+|. ++++|||||+++.+++|+||+++++||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 489999999999999999999999999999999999999999999999995 8999999999999999999999999999
Q ss_pred cCCCCeEEEEEEECCCceeeEEeccccccc-ccceEeEEEeCCCCCCCCCCCCCCeeeEEeeccccccHHHHHHHhhhCC
Q 008109 108 IQTGQSYIYNFTIVGQRGTLWWHAHISWLR-STLYGPIIILPKRGIPYPFAKPYKEVPIVFGEWFKSDTEAIINQALQTG 186 (577)
Q Consensus 108 i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~~ 186 (577)
|+||++|+|+|++ .++||||||||...|+ +||+|+|||+++.+...++ .+|+|++|+++||+++...+.........
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999998 7999999999998888 8999999999986544444 36899999999999987765433322211
Q ss_pred -CCCCCCCeEEEcCcCCCCCCCCCC-------------------ceeEEEEecCCEEEEEEEecCCCCcEEEEEcCceeE
Q 008109 187 -GGPNVSDAYTFNGLPGPLYNCSAK-------------------DTFKLKVKSGKTYLLRLVNSALNDDLFFSIANHTLT 246 (577)
Q Consensus 187 -~~~~~~~~~liNG~~~~~~~~~~~-------------------~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~ 246 (577)
.....++.++|||+.. +.|... ....++|++|++|||||||+++...+.|+|+||+|+
T Consensus 159 ~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~ 236 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQ--FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLT 236 (541)
T ss_pred CcCCCCCcceEECCCCC--CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEE
Confidence 1113568999999953 233211 224589999999999999999999999999999999
Q ss_pred EEEeCCcccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeeecccCCCCCCCCceEEEEEEecCCCccccCCCCCC
Q 008109 247 VVEVDAVYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARPYVTGLGTFDNSTVAGILEYEKPLNFIHSGNSIKK 326 (577)
Q Consensus 247 via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~ 326 (577)
|||+||.+++|+.+++|.|++||||||+|++++.+ +++|||++.....+ .......|||+|++... + ..
T Consensus 237 VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~-~~~y~ira~~~~~~---~~~~~~~aiL~Y~~~~~------~-~~ 305 (541)
T TIGR03388 237 VVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDP-SRNYWISVGVRGRK---PNTPPGLTVLNYYPNSP------S-RL 305 (541)
T ss_pred EEEeCCEecccceeCeEEecCCCEEEEEEeCCCCC-CCcEEEEEecccCC---CCCccEEEEEEECCCCC------C-CC
Confidence 99999999999999999999999999999998754 36899998754332 12346789999987542 1 10
Q ss_pred CCCcCCCCCCCCCccccccccccccccCCCCCCCCCCCCCcceEEEEeccCccCCCCCCcccCCCCCeeEEEecceeccC
Q 008109 327 LPLFKPILPPLNDTNFVTNFVNKLRSLGSAQFPANVPQNVDKRFFFTVGLGTSPCPRNQTCQGPNGTMFEASINNISFVM 406 (577)
Q Consensus 327 ~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~s~~~ 406 (577)
++...+..+.+.+....... .++.+.... ....|...++++++...... ......|++|+++|..
T Consensus 306 p~~~~~~~p~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~n~~s~~~ 370 (541)
T TIGR03388 306 PPTPPPVTPAWDDFDRSKAF--SLAIKAAMG-SPKPPETSDRRIVLLNTQNK------------INGYTKWAINNVSLTL 370 (541)
T ss_pred CCCCCCCCCCccccchhhcc--chhhhcccc-CCCCCCCCCcEEEEeccCcc------------cCceEEEEECcccCCC
Confidence 11100222333322111111 111111111 11223455666554322110 1124579999999998
Q ss_pred CchhhhhhhhcCCCCCcccCCC-CCCCCccccCCCCCCCCccccCCceEEEecCCCEEEEEEeeCCCC---CCCCCceee
Q 008109 407 PTTALLQAHFTGQSNGVYVPDF-PTSPLIPFNYTGNPPNNTMVSSGTKLVVLPFNTSVELIMQDTSIL---GAENHPLHL 482 (577)
Q Consensus 407 p~~~~l~~~~~~~~~g~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~---~~~~HP~Hl 482 (577)
|..|+|...+.+.. +.+..+. +...+..|+..... .+...+.++.++.++.|++|||+|+|.... ....|||||
T Consensus 371 p~~p~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HL 448 (541)
T TIGR03388 371 PHTPYLGSLKYNLL-NAFDQKPPPENYPRDYDIFKPP-PNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHL 448 (541)
T ss_pred CCccHHHHHhhcCC-ccccCCCCcccccccccccCCC-cccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEe
Confidence 88887776654331 2222211 01111122111110 111234567889999999999999996421 246899999
Q ss_pred cCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEecCceeEEEeeechhhhhcccEEEEEEecCCC
Q 008109 483 HGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKTAWLVLDGKL 562 (577)
Q Consensus 483 HG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~ 562 (577)
|||+||||++|.|.|+.+.....+|+.||++|||+.|+++||++|||++||||.|+|||||+||+..||+++|.+.
T Consensus 449 HGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~---- 524 (541)
T TIGR03388 449 HGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG---- 524 (541)
T ss_pred cCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc----
Confidence 9999999999999998765556789999999999999999999999999999999999999999999999999643
Q ss_pred CCCcCCCCCCCCCCC
Q 008109 563 PNQKLLPPPADLPKC 577 (577)
Q Consensus 563 ~~~~~~~~p~~~~~c 577 (577)
.+.++.+|+++++|
T Consensus 525 -~~~~~~~P~~~~~C 538 (541)
T TIGR03388 525 -VEKVGKLPKEALGC 538 (541)
T ss_pred -ccccCCCCccccCC
Confidence 35677799999999
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=2.2e-93 Score=769.78 Aligned_cols=491 Identities=27% Similarity=0.469 Sum_probs=372.8
Q ss_pred EEEEEEEEEEEeccCceeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCC-CceeeeEcceeccCCCCCCCCCCcccccc
Q 008109 30 RHYKFNVELKNVTRLCHTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQ-HNISIHWHGIRQLRSGWADGPAYITQCPI 108 (577)
Q Consensus 30 ~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~tq~~i 108 (577)
-.|+|+|++..++++|+.+.+++|||++|||+|++++||+|+|+|+|+|+ ++++|||||+++..++|+||+|++|||+|
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 46899999999999999999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred CCCCeEEEEEEEC-CCceeeEEecccccccccceEeEEEeCCCCCCCCCCCCCCeeeEEeeccccccHHHHHHHhhhCCC
Q 008109 109 QTGQSYIYNFTIV-GQRGTLWWHAHISWLRSTLYGPIIILPKRGIPYPFAKPYKEVPIVFGEWFKSDTEAIINQALQTGG 187 (577)
Q Consensus 109 ~PG~~~~Y~~~~~-~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~~~ 187 (577)
+||++|+|+|+++ +++||||||||.+.|+.||+|+|||+++.+.+. .+|+|++|+++||++....++.........
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~~---~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPPY---KYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccCC---CccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 9999999999974 589999999999999888999999998764332 358899999999999987766544332211
Q ss_pred -CCCCCCeEEEcCcCCCCCC---CC---CCceeEEEEecCCEEEEEEEecCCCCcEEEEEcCce-eEEEEeCCcccCceE
Q 008109 188 -GPNVSDAYTFNGLPGPLYN---CS---AKDTFKLKVKSGKTYLLRLVNSALNDDLFFSIANHT-LTVVEVDAVYVKPFE 259 (577)
Q Consensus 188 -~~~~~~~~liNG~~~~~~~---~~---~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~-~~via~DG~~v~P~~ 259 (577)
....++.++||||...... ++ .+..+.++|++||+|||||||+|+...+.|+|+||+ |+|||+||.+++|+.
T Consensus 166 ~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~ 245 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAK 245 (538)
T ss_pred ccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceE
Confidence 1234689999999654320 00 113578999999999999999999999999999999 999999999999999
Q ss_pred EeEEEECCCceEEEEEEeCCCCC-----CceEEEEeeecccCCCCCCCCceEEEEEEecCCCccccCCCCCCCCCcCCCC
Q 008109 260 TETLVITPGQTTNVLLETKPHYP-----SATFFMTARPYVTGLGTFDNSTVAGILEYEKPLNFIHSGNSIKKLPLFKPIL 334 (577)
Q Consensus 260 ~d~l~l~pgeR~dv~v~~~~~~~-----~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~ 334 (577)
+++|.|++||||||+|+++++.. .++||||+.....+ +.....|||+|++... ...+.. |..
T Consensus 246 v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~----~~~~~~aiL~Y~~~~~--------~~~~~~-p~~ 312 (538)
T TIGR03390 246 IDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP----KVYRGYAVLRYRSDKA--------SKLPSV-PET 312 (538)
T ss_pred eCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC----CcceEEEEEEeCCCCC--------CCCCCC-CCC
Confidence 99999999999999999997521 28999999764322 2345789999986542 111111 111
Q ss_pred CCCC--CccccccccccccccCCCCCC-CCCCCCCcceEEEEeccCccCCCCCCcccCCCCCeeEEEecceeccC--Cch
Q 008109 335 PPLN--DTNFVTNFVNKLRSLGSAQFP-ANVPQNVDKRFFFTVGLGTSPCPRNQTCQGPNGTMFEASINNISFVM--PTT 409 (577)
Q Consensus 335 p~~~--~~~~~~~~~~~l~~l~~~~~~-~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~s~~~--p~~ 409 (577)
+... ..... .....+.++.....+ ...+...++.+.+.+.+... ...+.+.|++|+++|.. +..
T Consensus 313 ~~~~~~~~~~~-~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~----------~~~g~~~~~~N~~s~~~~~~~~ 381 (538)
T TIGR03390 313 PPLPLPNSTYD-WLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVD----------PLNGRVAWLQNGLSWTESVRQT 381 (538)
T ss_pred CCCCccCcchh-hhheeeEecCccccCCCCCCCcCceEEEEEcccccc----------ccCCeEEEEECCcccCCCCCCC
Confidence 1110 01000 001123333221111 11234567777666554321 01235789999999985 677
Q ss_pred hhhhhhhcCCCCCcccCCCCCCCCccccCCCCCCCCccccCCceEEEecCCCEEEEEEeeCCCC-----CCCCCceeecC
Q 008109 410 ALLQAHFTGQSNGVYVPDFPTSPLIPFNYTGNPPNNTMVSSGTKLVVLPFNTSVELIMQDTSIL-----GAENHPLHLHG 484 (577)
Q Consensus 410 ~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~-----~~~~HP~HlHG 484 (577)
|+|...+.+. . +..++ |+.. .........+.++.++.|++|||+|+|.... ....|||||||
T Consensus 382 P~L~~~~~~~----~----~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHG 448 (538)
T TIGR03390 382 PYLVDIYENG----L----PATPN--YTAA---LANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHG 448 (538)
T ss_pred chHHHHhcCC----C----CcCCC--cccc---cccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecC
Confidence 8776554321 0 11110 1100 0000122346678899999999999996421 24789999999
Q ss_pred CceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeC----------CCcEEEEEEEecCceeEEEeeechhhhhcccEEE
Q 008109 485 YNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVP----------SGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKTA 554 (577)
Q Consensus 485 ~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp----------~~~~v~irf~adnpG~w~~HCHil~H~d~GM~~~ 554 (577)
|+||||++|.|.|++......+++.||++|||+.|+ +++|++|||++||||.|+|||||.||+.+||+++
T Consensus 449 h~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~ 528 (538)
T TIGR03390 449 RHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTV 528 (538)
T ss_pred CcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEE
Confidence 999999999999997654456788899999999996 8899999999999999999999999999999999
Q ss_pred EEEecC
Q 008109 555 WLVLDG 560 (577)
Q Consensus 555 ~~V~~~ 560 (577)
|.|.+.
T Consensus 529 ~~~~~~ 534 (538)
T TIGR03390 529 WVFGDA 534 (538)
T ss_pred EEeCCh
Confidence 998653
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=2.1e-78 Score=651.84 Aligned_cols=419 Identities=26% Similarity=0.453 Sum_probs=315.7
Q ss_pred EEEEEEEEEEEeccCceeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccC
Q 008109 30 RHYKFNVELKNVTRLCHTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQ 109 (577)
Q Consensus 30 ~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~ 109 (577)
++|+|+|++..++++|+.+.+|+|||++|||+||+++||+|+|+|+|+|+++++|||||++++.. +||+|+++||+|+
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~--~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQ--MDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCcc--ccCCCcccccccC
Confidence 79999999999999999999999999999999999999999999999999999999999998754 9999999999999
Q ss_pred CCCeEEEEEEECCCceeeEEeccccccc-ccceEeEEEeCCCCCCCCCCCCCCeeeEEeeccccccHHHHHHHhhh----
Q 008109 110 TGQSYIYNFTIVGQRGTLWWHAHISWLR-STLYGPIIILPKRGIPYPFAKPYKEVPIVFGEWFKSDTEAIINQALQ---- 184 (577)
Q Consensus 110 PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~---- 184 (577)
||++|+|+|++ .++||||||||...|. .||+|+|||+++++.+. .+|+|++|+++||++.+..+++.....
T Consensus 124 PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~ 199 (587)
T TIGR01480 124 PGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMAGH 199 (587)
T ss_pred CCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhccccc
Confidence 99999999998 7899999999998877 89999999998754333 458999999999997766554332110
Q ss_pred -----------------CCCC---------------C-------CCCCeEEEcCcCCCCCCCCCCceeEEEEecCCEEEE
Q 008109 185 -----------------TGGG---------------P-------NVSDAYTFNGLPGPLYNCSAKDTFKLKVKSGKTYLL 225 (577)
Q Consensus 185 -----------------~~~~---------------~-------~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rl 225 (577)
.|.. + .....+||||+..+ ..+++.+++|++|||
T Consensus 200 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~-------~~~~~~v~~G~rvRL 272 (587)
T TIGR01480 200 DNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTPA-------GNWTGLFRPGEKVRL 272 (587)
T ss_pred ccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccCC-------CCceEEECCCCEEEE
Confidence 0100 0 00123789998531 346789999999999
Q ss_pred EEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeeecccCCCCCCCCce
Q 008109 226 RLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARPYVTGLGTFDNSTV 305 (577)
Q Consensus 226 RliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~ 305 (577)
||||+|+.+.+.|+|+||+|+||++||++++|+.++++.|+|||||||+|+.++. |.|+|.+..... ...+
T Consensus 273 R~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~~---g~~~i~a~~~~~------~~~~ 343 (587)
T TIGR01480 273 RFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTGD---DAFTIFAQDSDR------TGYA 343 (587)
T ss_pred EEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCCC---ceEEEEEEecCC------CceE
Confidence 9999999999999999999999999999999999999999999999999998754 899999875321 2366
Q ss_pred EEEEEEecCCCccccCCCCCCCCCcCCC-CCCCCCccc--------c--cc-----------------------------
Q 008109 306 AGILEYEKPLNFIHSGNSIKKLPLFKPI-LPPLNDTNF--------V--TN----------------------------- 345 (577)
Q Consensus 306 ~ail~y~~~~~~~~~~~~~~~~~~~~p~-~p~~~~~~~--------~--~~----------------------------- 345 (577)
.++|++.+... ...+.+++. .....+... . ..
T Consensus 344 ~~~l~~~~~~~--------~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (587)
T TIGR01480 344 RGTLAVRLGLT--------APVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDAS 415 (587)
T ss_pred EEEEecCCCCC--------CCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCcccccccccc
Confidence 77888765321 111111010 000000000 0 00
Q ss_pred ---------------------------------------ccccccccCCCCCCCCCCCCCcceEEEEeccCccCCCCCCc
Q 008109 346 ---------------------------------------FVNKLRSLGSAQFPANVPQNVDKRFFFTVGLGTSPCPRNQT 386 (577)
Q Consensus 346 ---------------------------------------~~~~l~~l~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~ 386 (577)
...+|+.+. +...+...++++.+.+.
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~----~~~~~~~p~r~~~~~L~----------- 480 (587)
T TIGR01480 416 PKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLF----PPPDGRAPGREIELHLT----------- 480 (587)
T ss_pred ccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccc----cccCcCCCCceEEEEEc-----------
Confidence 000000000 00001112222222221
Q ss_pred ccCCCCCeeEEEecceeccCCchhhhhhhhcCCCCCcccCCCCCCCCccccCCCCCCCCccccCCceEEEecCCCEEEEE
Q 008109 387 CQGPNGTMFEASINNISFVMPTTALLQAHFTGQSNGVYVPDFPTSPLIPFNYTGNPPNNTMVSSGTKLVVLPFNTSVELI 466 (577)
Q Consensus 387 ~~~~~~~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~ 466 (577)
.+..++.|+|||..|.. ...+.++.|++|+|+
T Consensus 481 ---g~m~~~~wtiNG~~~~~---------------------------------------------~~pl~v~~Gervri~ 512 (587)
T TIGR01480 481 ---GNMERFAWSFDGEAFGL---------------------------------------------KTPLRFNYGERLRVV 512 (587)
T ss_pred ---CCCceeEEEECCccCCC---------------------------------------------CCceEecCCCEEEEE
Confidence 12235667888765410 112468899999999
Q ss_pred EeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEecCceeEEEeeechhh
Q 008109 467 MQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVH 546 (577)
Q Consensus 467 l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H 546 (577)
|.|.+ .+.||||||||.|+|+..+ |. .+.+|||+.|+||+++.|+|.+||||.|+||||++.|
T Consensus 513 l~N~t---~~~HpmHlHG~~f~v~~~~-G~-------------~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H 575 (587)
T TIGR01480 513 LVNDT---MMAHPIHLHGMWSELEDGQ-GE-------------FQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLH 575 (587)
T ss_pred EECCC---CCCcceeEcCceeeeecCC-Cc-------------ccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHH
Confidence 99975 4899999999999998653 21 1357899999999999999999999999999999999
Q ss_pred hhcccEEEEEEe
Q 008109 547 TSWGLKTAWLVL 558 (577)
Q Consensus 547 ~d~GM~~~~~V~ 558 (577)
++.|||..|+|.
T Consensus 576 ~~~GM~~~~~v~ 587 (587)
T TIGR01480 576 MEAGMFREVTVR 587 (587)
T ss_pred HhCcCcEEEEeC
Confidence 999999999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=4.6e-75 Score=621.96 Aligned_cols=428 Identities=19% Similarity=0.240 Sum_probs=297.7
Q ss_pred eEEEEEEEEEEEeccCc-eeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccc
Q 008109 29 TRHYKFNVELKNVTRLC-HTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCP 107 (577)
Q Consensus 29 ~~~~~l~~~~~~~~~~g-~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~ 107 (577)
...|+|++++...++++ ....+|+|||++|||+||+++||+|+|+|+|+|+++|+|||||+++++. +||+| ||+
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p---q~~ 119 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP---QGI 119 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC---CCC
Confidence 34699999999999976 4457999999999999999999999999999999999999999999876 99987 899
Q ss_pred cCCCCeEEEEEEECCCceeeEEeccccc----cc-ccceEeEEEeCCCCCCCCCCC--CCCeeeEEeeccccccHHHHHH
Q 008109 108 IQTGQSYIYNFTIVGQRGTLWWHAHISW----LR-STLYGPIIILPKRGIPYPFAK--PYKEVPIVFGEWFKSDTEAIIN 180 (577)
Q Consensus 108 i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~ 180 (577)
|.||++|+|+|++++++||||||||.++ |. +||+|+|||+++.+...+++. ...|++|+++||+.+...++..
T Consensus 120 I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~ 199 (523)
T PRK10965 120 IAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDY 199 (523)
T ss_pred CCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceec
Confidence 9999999999998667999999999854 43 899999999998765433332 3469999999998765443211
Q ss_pred Hhh-hCCCCCCCCCeEEEcCcCCCCCCCCCCceeEEEEecCCEEEEEEEecCCCCcEEEEE-cCceeEEEEeCCccc-Cc
Q 008109 181 QAL-QTGGGPNVSDAYTFNGLPGPLYNCSAKDTFKLKVKSGKTYLLRLVNSALNDDLFFSI-ANHTLTVVEVDAVYV-KP 257 (577)
Q Consensus 181 ~~~-~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~v-~P 257 (577)
... ........++.++|||+.+ |.+.++ +++|||||||+|+.+.+.|++ ++|+|+|||.||+++ +|
T Consensus 200 ~~~~~~~~~g~~gd~~lVNG~~~----------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P 268 (523)
T PRK10965 200 QLDVMTAAVGWFGDTLLTNGAIY----------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEP 268 (523)
T ss_pred cccccccccCccCCeEEECCccc----------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCc
Confidence 100 1111234678999999975 446665 579999999999999999998 799999999999987 89
Q ss_pred eEEeEEEECCCceEEEEEEeCCCCCCceEEEEeeecccCC-CCCCCCceEEEEEEecCCCccccCCCCCCCCCcCCCCCC
Q 008109 258 FETETLVITPGQTTNVLLETKPHYPSATFFMTARPYVTGL-GTFDNSTVAGILEYEKPLNFIHSGNSIKKLPLFKPILPP 336 (577)
Q Consensus 258 ~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~-~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~p~ 336 (577)
+.+++|.|+|||||||+|++++. +.|.+.+....... ..........++++..... .....+ | .
T Consensus 269 ~~v~~l~lapGeR~dvlv~~~~~---~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~-P---~ 333 (523)
T PRK10965 269 VKVSELPILMGERFEVLVDTSDG---KAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLI--------SASGTL-P---D 333 (523)
T ss_pred cEeCeEEECccceEEEEEEcCCC---ceEEEEEecccCcccccccCCCceeEEEEeccCc--------CCCCcC-C---h
Confidence 99999999999999999999875 88999886432210 0000011234555543221 000011 1 0
Q ss_pred CCCccccccccccccccCCCCCCCCCCCCCcceEEEEeccCc----c-CC-CCCC--cccC--------C--CC------
Q 008109 337 LNDTNFVTNFVNKLRSLGSAQFPANVPQNVDKRFFFTVGLGT----S-PC-PRNQ--TCQG--------P--NG------ 392 (577)
Q Consensus 337 ~~~~~~~~~~~~~l~~l~~~~~~~~~p~~~d~~~~~~~~~~~----~-~~-~~~~--~~~~--------~--~~------ 392 (577)
.++.+... +... ....+++.+.+.... . .. .... ...+ . .+
T Consensus 334 ------------~l~~~~~~--~~~~-~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (523)
T PRK10965 334 ------------SLASLPAL--PSLE-GLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMN 398 (523)
T ss_pred ------------hhccCCCC--Cccc-ccceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccc
Confidence 01111000 0000 001122322221000 0 00 0000 0000 0 00
Q ss_pred ------Ce-----eEEEecceeccCCchhhhhhhhcCCCCCcccCCCCCCCCccccCCCCCCCCccccCCceEEEecCCC
Q 008109 393 ------TM-----FEASINNISFVMPTTALLQAHFTGQSNGVYVPDFPTSPLIPFNYTGNPPNNTMVSSGTKLVVLPFNT 461 (577)
Q Consensus 393 ------~~-----~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 461 (577)
++ ..|+|||++|.. ....+.++.|+
T Consensus 399 ~~~~~~~~~~~~~~~~~ING~~~~~--------------------------------------------~~~~~~~~~G~ 434 (523)
T PRK10965 399 HGAADAGPAFDFHHANKINGKAFDM--------------------------------------------NKPMFAAKKGQ 434 (523)
T ss_pred cccccccccccccccccCCCeECCC--------------------------------------------CCcceecCCCC
Confidence 00 012455544421 12235678999
Q ss_pred EEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEec----CceeE
Q 008109 462 SVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLAD----NPGVW 537 (577)
Q Consensus 462 ~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~ad----npG~w 537 (577)
+++|+|.|.+. .+.|||||||++|||++++.. ......+.|||||.|++ +.+.|+++++ ++|.|
T Consensus 435 ~e~w~i~N~~~--~~~Hp~HlHg~~F~Vl~~~g~---------~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~ 502 (523)
T PRK10965 435 YERWVISGVGD--MMLHPFHIHGTQFRILSENGK---------PPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAY 502 (523)
T ss_pred EEEEEEEeCCC--CCccCeEEeCcEEEEEEecCC---------CCCccccccccEEEECC-cEEEEEEEecCCCCCCCCE
Confidence 99999999752 368999999999999999632 11223468999999988 6677666654 67799
Q ss_pred EEeeechhhhhcccEEEEEEe
Q 008109 538 FMHCHLEVHTSWGLKTAWLVL 558 (577)
Q Consensus 538 ~~HCHil~H~d~GM~~~~~V~ 558 (577)
|||||||+|||.|||..|.|.
T Consensus 503 ~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 503 MAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred EEEeCchhhhccCccceeEeC
Confidence 999999999999999999873
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=1.5e-73 Score=605.52 Aligned_cols=402 Identities=18% Similarity=0.218 Sum_probs=292.5
Q ss_pred EEEEEEEEEEeccC-ceeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccC
Q 008109 31 HYKFNVELKNVTRL-CHTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQ 109 (577)
Q Consensus 31 ~~~l~~~~~~~~~~-g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~ 109 (577)
.|+|++++...+++ |..+.+|+|||++|||+||+++||+|+|+|+|+|+++|+|||||++++.. .+||++ ++|.
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~----~~I~ 121 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA----RMMS 121 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc----ccCC
Confidence 38999999999988 46789999999999999999999999999999999999999999999876 477765 7899
Q ss_pred CCCeEEEEEEECCCceeeEEeccccc----cc-ccceEeEEEeCCCCCCCCCCC--CCCeeeEEeeccccccHHHHHHHh
Q 008109 110 TGQSYIYNFTIVGQRGTLWWHAHISW----LR-STLYGPIIILPKRGIPYPFAK--PYKEVPIVFGEWFKSDTEAIINQA 182 (577)
Q Consensus 110 PG~~~~Y~~~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~~~ 182 (577)
||++|+|+|++.+++||||||||.++ |. +||+|+|||+++.+...+++. ...|++|+++||..+........
T Consensus 122 PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~- 200 (471)
T PRK10883 122 PNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN- 200 (471)
T ss_pred CCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-
Confidence 99999999998677999999999876 33 899999999998765444432 34599999999987654322110
Q ss_pred hhCCCCCCCCCeEEEcCcCCCCCCCCCCceeEEEEecCCEEEEEEEecCCCCcEEEEE-cCceeEEEEeCCccc-CceEE
Q 008109 183 LQTGGGPNVSDAYTFNGLPGPLYNCSAKDTFKLKVKSGKTYLLRLVNSALNDDLFFSI-ANHTLTVVEVDAVYV-KPFET 260 (577)
Q Consensus 183 ~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~v-~P~~~ 260 (577)
........++.++|||+.+ |.++|++| +|||||||+|+.+.+.|+| ++|+|+||++||+++ +|+.+
T Consensus 201 -~~~~~g~~gd~~lvNG~~~----------p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~ 268 (471)
T PRK10883 201 -EPGSGGFVGDTLLVNGVQS----------PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSV 268 (471)
T ss_pred -ccccCCccCCeeEECCccC----------CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEe
Confidence 1111234678999999965 46899875 8999999999999999999 899999999998776 89999
Q ss_pred eEEEECCCceEEEEEEeCCCCCCceEEEEeeecccCCC----CCCCC---ceEEEEEEecCCCccccCCCCCCCCCcCCC
Q 008109 261 ETLVITPGQTTNVLLETKPHYPSATFFMTARPYVTGLG----TFDNS---TVAGILEYEKPLNFIHSGNSIKKLPLFKPI 333 (577)
Q Consensus 261 d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~----~~~~~---~~~ail~y~~~~~~~~~~~~~~~~~~~~p~ 333 (577)
+++.|+|||||||+|++++. +.+.|.+........ .+... ....+++...... .+.. +
T Consensus 269 ~~l~l~pGeR~dvlVd~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~- 333 (471)
T PRK10883 269 KQLSLAPGERREILVDMSNG---DEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGL----------LPLV-T- 333 (471)
T ss_pred CeEEECCCCeEEEEEECCCC---ceEEEECCCccccccccccccCCccccccceeEEEEcccc----------ccCC-C-
Confidence 99999999999999999774 677777632111000 00000 0111222221100 0000 0
Q ss_pred CCCCCCccccccccccccccCCCCCCCCCCCCCcceEEEEeccCccCCCCCCcccCCCCCeeEEEecceeccCCchhhhh
Q 008109 334 LPPLNDTNFVTNFVNKLRSLGSAQFPANVPQNVDKRFFFTVGLGTSPCPRNQTCQGPNGTMFEASINNISFVMPTTALLQ 413 (577)
Q Consensus 334 ~p~~~~~~~~~~~~~~l~~l~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~s~~~p~~~~l~ 413 (577)
. .....+.. .. ..+....+++.+.++. . .|.|||+.|.+..
T Consensus 334 -----~-----~~p~~l~~---~~---~~~~~~~~~~~~~l~~----------------~--~~~INg~~~~~~~----- 374 (471)
T PRK10883 334 -----D-----NLPMRLLP---DE---IMEGSPIRSREISLGD----------------D--LPGINGALWDMNR----- 374 (471)
T ss_pred -----C-----cCChhhcC---CC---CCCCCCcceEEEEecC----------------C--cCccCCcccCCCc-----
Confidence 0 00011111 00 0111223333333211 0 2568887763210
Q ss_pred hhhcCCCCCcccCCCCCCCCccccCCCCCCCCccccCCceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEec
Q 008109 414 AHFTGQSNGVYVPDFPTSPLIPFNYTGNPPNNTMVSSGTKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQG 493 (577)
Q Consensus 414 ~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g 493 (577)
..+.++.|++++|.+.|. +.|||||||+.|||++++
T Consensus 375 ---------------------------------------~~~~~~~g~~e~W~~~n~-----~~HP~HlHg~~FqVl~~~ 410 (471)
T PRK10883 375 ---------------------------------------IDVTAQQGTWERWTVRAD-----MPQAFHIEGVMFLIRNVN 410 (471)
T ss_pred ---------------------------------------ceeecCCCCEEEEEEECC-----CCcCEeECCccEEEEEec
Confidence 113567899999999883 689999999999999996
Q ss_pred cCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEecCce----eEEEeeechhhhhcccEEEEEEec
Q 008109 494 FGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLADNPG----VWFMHCHLEVHTSWGLKTAWLVLD 559 (577)
Q Consensus 494 ~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnpG----~w~~HCHil~H~d~GM~~~~~V~~ 559 (577)
... ....+..|||||.|+ +.+.|+++++++| .||||||||+|||.|||..|+|.+
T Consensus 411 G~~---------~~~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 411 GAM---------PFPEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred CCC---------CCccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 321 111224799999996 4699999999887 899999999999999999999965
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.7e-59 Score=500.90 Aligned_cols=400 Identities=26% Similarity=0.393 Sum_probs=287.1
Q ss_pred cCceeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECC
Q 008109 43 RLCHTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVG 122 (577)
Q Consensus 43 ~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~ 122 (577)
..+.....+.|||++|||+||+++||+|+|+++|+|.+.+++||||+.++.. +||++..+|+.+.||++++|.|+. +
T Consensus 47 ~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p~~--~dG~~~~~~~~~~~~~~~~y~f~~-~ 123 (451)
T COG2132 47 APGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVPGE--MDGVPPLTQIPPGPGETPTYTFTQ-D 123 (451)
T ss_pred ecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccCcc--ccCCCcccccCCCCCCcEEEeecC-C
Confidence 4567788999999999999999999999999999998889999999988844 999999999999999999999997 6
Q ss_pred CceeeEEeccccccc-ccceEeEEEeCCCCCCCCCCCCCCeeeEEeeccccccHHHHHHHhhhCCCCCCCCCeEEEcCcC
Q 008109 123 QRGTLWWHAHISWLR-STLYGPIIILPKRGIPYPFAKPYKEVPIVFGEWFKSDTEAIINQALQTGGGPNVSDAYTFNGLP 201 (577)
Q Consensus 123 ~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~ 201 (577)
.+||||||+|.++|. +||+|++||+++.+.+. ..|.+..+++.+|+.......... ........++..+|||+.
T Consensus 124 ~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~vnG~~ 198 (451)
T COG2132 124 VPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE--GPAMGGFPGDTLLVNGAI 198 (451)
T ss_pred CCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC--CccccCCCCCeEEECCCc
Confidence 677999999999987 99999999999976544 457788888888876655544332 122233456899999976
Q ss_pred CCCCCCCCCceeEEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCceEEEEEEeCCCC
Q 008109 202 GPLYNCSAKDTFKLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQTTNVLLETKPHY 281 (577)
Q Consensus 202 ~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~~ 281 (577)
++ +...++++||||++|+++.+.+.+++.+++|+||++||.+++|..+|.+.|+|||||||++++.+.
T Consensus 199 ~p-----------~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~~- 266 (451)
T COG2132 199 LP-----------FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMNDG- 266 (451)
T ss_pred cc-----------eeecCCCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCCC-
Confidence 53 344455679999999998888889999999999999999998888999999999999999999985
Q ss_pred CCceEEEEeeecccCCCCCCCCceEEEEEEecCCCccccCCCCCCCCCcCCCCC-CCCCccccccccccccccCCCCCCC
Q 008109 282 PSATFFMTARPYVTGLGTFDNSTVAGILEYEKPLNFIHSGNSIKKLPLFKPILP-PLNDTNFVTNFVNKLRSLGSAQFPA 360 (577)
Q Consensus 282 ~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~p-~~~~~~~~~~~~~~l~~l~~~~~~~ 360 (577)
+.+.+.+.. .... ....+......... .+.+..++... ...+.. .......++...
T Consensus 267 --~~~~l~~~~-~~~~-----~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~------ 323 (451)
T COG2132 267 --GAVTLTALG-EDMP-----DTLKGFRAPNPILT--------PSYPVLNGRVGAPTGDMA-DHAPVGLLVTIL------ 323 (451)
T ss_pred --CeEEEEecc-ccCC-----ceeeeeeccccccc--------cccccccccccCCCcchh-hccccccchhhc------
Confidence 889998865 1110 01111111111000 00000000000 000000 000000000000
Q ss_pred CCCC-CCcceEEEEeccCccCCCCCCcccCCCCCeeEEEecceeccCCchhhhhhhhcCCCCCcccCCCCCCCCccccCC
Q 008109 361 NVPQ-NVDKRFFFTVGLGTSPCPRNQTCQGPNGTMFEASINNISFVMPTTALLQAHFTGQSNGVYVPDFPTSPLIPFNYT 439 (577)
Q Consensus 361 ~~p~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~ 439 (577)
..+. ..+....+.. ....+.|.+|+..|..
T Consensus 324 ~~~~~~~~~~~~l~~----------------~~~~~~~~~n~~~~~~--------------------------------- 354 (451)
T COG2132 324 VEPGPNRDTDFHLIG----------------GIGGYVWAINGKAFDD--------------------------------- 354 (451)
T ss_pred CCCcccccccchhhc----------------ccccccccccCccCCC---------------------------------
Confidence 0000 0000000000 0012235555444311
Q ss_pred CCCCCCccccCCceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEe
Q 008109 440 GNPPNNTMVSSGTKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGV 519 (577)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~v 519 (577)
....+.++.|++++|++.|.+ .+.|||||||+.|+|++.+ . ......+.||||+.+
T Consensus 355 -----------~~~~~~~~~G~~~~~~i~n~~---~~~HP~HlHg~~F~v~~~~-~---------~~~~~~~~~kDTv~v 410 (451)
T COG2132 355 -----------NRVTLIAKAGTRERWVLTNDT---PMPHPFHLHGHFFQVLSGD-A---------PAPGAAPGWKDTVLV 410 (451)
T ss_pred -----------CcCceeecCCCEEEEEEECCC---CCccCeEEcCceEEEEecC-C---------CcccccCccceEEEe
Confidence 123457788999999999975 3899999999999999986 1 122245689999999
Q ss_pred CCCcEEEEEEEecCceeEEEeeechhhhhcccEEEEEEe
Q 008109 520 PSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKTAWLVL 558 (577)
Q Consensus 520 p~~~~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~ 558 (577)
.+++.++|+|.+++||.|+|||||++|++.|||..+.|.
T Consensus 411 ~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 411 APGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred CCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 999999999999999999999999999999999999875
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=1.2e-47 Score=386.63 Aligned_cols=263 Identities=21% Similarity=0.247 Sum_probs=216.7
Q ss_pred eeeEEEEEEEEEEEecc-CceeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCC--CceeeeEcceeccCCCCCCCCCCc
Q 008109 27 AITRHYKFNVELKNVTR-LCHTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQ--HNISIHWHGIRQLRSGWADGPAYI 103 (577)
Q Consensus 27 ~~~~~~~l~~~~~~~~~-~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~--~~~~iH~HG~~~~~~~~~DGv~~~ 103 (577)
..+++|+|++++..++. +|..+.+|+|||++|||+|++++||+|+|+|+|++. .++++||||.. ++||++++
T Consensus 25 ~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~~~~ 99 (311)
T TIGR02376 25 PKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGGAAL 99 (311)
T ss_pred CcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCCCcc
Confidence 57899999999999885 699999999999999999999999999999999985 68999999963 38998888
Q ss_pred cccccCCCCeEEEEEEECCCceeeEEeccccc----cc-ccceEeEEEeCCCCCCCCCCCCCCeeeEEeeccccccHHHH
Q 008109 104 TQCPIQTGQSYIYNFTIVGQRGTLWWHAHISW----LR-STLYGPIIILPKRGIPYPFAKPYKEVPIVFGEWFKSDTEAI 178 (577)
Q Consensus 104 tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~ 178 (577)
+| |.||++++|+|++ +++||||||||.++ +. +||+|+|||++++..+ ..|+|++|+++||+++.....
T Consensus 100 ~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~~~~~~ 172 (311)
T TIGR02376 100 TQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTPKDEGE 172 (311)
T ss_pred ee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEeccccccc
Confidence 87 9999999999997 78999999999754 44 8999999999875422 458999999999988654321
Q ss_pred HHHhh--hCCCCCCCCCeEEEcCcCCCCCCCCCCceeEEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccC
Q 008109 179 INQAL--QTGGGPNVSDAYTFNGLPGPLYNCSAKDTFKLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVK 256 (577)
Q Consensus 179 ~~~~~--~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~ 256 (577)
..... ........++.++|||+.+++ .+.+++++|+++||||+|++..+.+.|+++|+.+++|+.||.++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~iNG~~~~~-------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~ 245 (311)
T TIGR02376 173 GGAYEDDVAAMRTLTPTHVVFNGAVGAL-------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFAN 245 (311)
T ss_pred cccccchHHHHhcCCCCEEEECCccCCC-------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccC
Confidence 10000 000011345899999997643 245799999999999999999898899999999999999999996
Q ss_pred ce--EEeEEEECCCceEEEEEEeCCCCCCceEEEEeeecccCCCCCCCCceEEEEEEecCC
Q 008109 257 PF--ETETLVITPGQTTNVLLETKPHYPSATFFMTARPYVTGLGTFDNSTVAGILEYEKPL 315 (577)
Q Consensus 257 P~--~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~ 315 (577)
|. .++++.|+||||+||+|+++++ |.|+++++.+.... +....++|+|++..
T Consensus 246 ~~~~~~~~~~i~PG~R~dv~v~~~~p---G~y~~~~~~~~~~~----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 246 PPNRDVETWFIPGGSAAAALYTFEQP---GVYAYVDHNLIEAF----EKGAAAQVKVEGAW 299 (311)
T ss_pred CCCCCcceEEECCCceEEEEEEeCCC---eEEEEECcHHHHHH----hCCCEEEEEECCCC
Confidence 54 4899999999999999999986 99999998754321 23578999998654
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=2.5e-36 Score=259.89 Aligned_cols=116 Identities=45% Similarity=0.801 Sum_probs=108.8
Q ss_pred EEEEEEeccCceeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccCCCCeE
Q 008109 35 NVELKNVTRLCHTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSY 114 (577)
Q Consensus 35 ~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~ 114 (577)
+|++..++++|..+.+|+|||++|||+||+++||+|+|+|+|+++++++|||||++++...|+||+++++||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47889999998779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCceeeEEeccccccc-ccceEeEEEeCCC
Q 008109 115 IYNFTIVGQRGTLWWHAHISWLR-STLYGPIIILPKR 150 (577)
Q Consensus 115 ~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~ 150 (577)
+|+|++++++||||||||.+++. +||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 99999966699999999999875 9999999999874
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=2.2e-29 Score=225.93 Aligned_cols=107 Identities=40% Similarity=0.778 Sum_probs=95.0
Q ss_pred cCCceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEE
Q 008109 449 SSGTKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIR 528 (577)
Q Consensus 449 ~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~ir 528 (577)
..+..++.++.|++|+|+|+|.+ ...|||||||++|+|++++.+.++.. ....++..+|.||||+.|+++++++||
T Consensus 30 ~~~~~~~~~~~g~~v~~~l~N~~---~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i~ 105 (138)
T PF07731_consen 30 FGNTPVIEVKNGDVVEIVLQNNG---SMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVIR 105 (138)
T ss_dssp SSTTSEEEEETTSEEEEEEEECT---TSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEEE
T ss_pred CCCcceEEEeCCCEEEEEEECCC---CCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEEE
Confidence 45678899999999999999965 47999999999999999987765443 345678889999999999999999999
Q ss_pred EEecCceeEEEeeechhhhhcccEEEEEEec
Q 008109 529 FLADNPGVWFMHCHLEVHTSWGLKTAWLVLD 559 (577)
Q Consensus 529 f~adnpG~w~~HCHil~H~d~GM~~~~~V~~ 559 (577)
|++||||.|+|||||++|++.|||++|.|.+
T Consensus 106 ~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 106 FRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999999865
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.94 E-value=8.1e-27 Score=213.74 Aligned_cols=149 Identities=30% Similarity=0.602 Sum_probs=120.4
Q ss_pred CeeeEEeeccccccHHHHHHHhhhCC----CCCCCCCeEEEcCcCCCCCCCC-----CCceeEEEEecCCEEEEEEEecC
Q 008109 161 KEVPIVFGEWFKSDTEAIINQALQTG----GGPNVSDAYTFNGLPGPLYNCS-----AKDTFKLKVKSGKTYLLRLVNSA 231 (577)
Q Consensus 161 ~e~~l~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~liNG~~~~~~~~~-----~~~~~~l~v~~G~~~rlRliN~~ 231 (577)
.|++|+++||+++.........+..+ ..+..+++++|||+.+ +.|+ ....+.+++++|++|||||||++
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~ 78 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGR--FDCSSADYTGGEPPVIKVKPGERYRLRLINAG 78 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTC--BTTCTTGSTTSTSGEEEEETTTEEEEEEEEES
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccc--cccccccccccccceEEEcCCcEEEEEEEecc
Confidence 37899999999988877765444332 1256889999999976 4444 24678999999999999999999
Q ss_pred CCCcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeeecccCCCCCCCCceEEEEEE
Q 008109 232 LNDDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARPYVTGLGTFDNSTVAGILEY 311 (577)
Q Consensus 232 ~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y 311 (577)
+...+.|+|+||+|+|||+||.+++|+.+++|.|+|||||||+|++++++ |+|+|++................|+|+|
T Consensus 79 ~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~--g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 79 ASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPP--GNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp SS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCS--SEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred CCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCC--CeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999854 9999999632222222345678999999
Q ss_pred ec
Q 008109 312 EK 313 (577)
Q Consensus 312 ~~ 313 (577)
++
T Consensus 157 ~~ 158 (159)
T PF00394_consen 157 DG 158 (159)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.76 E-value=4.8e-18 Score=151.79 Aligned_cols=102 Identities=19% Similarity=0.281 Sum_probs=79.9
Q ss_pred CceeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCC---CceeeeEcceeccCCCCCCCCCCccccccCCC---C-e--E
Q 008109 44 LCHTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQ---HNISIHWHGIRQLRSGWADGPAYITQCPIQTG---Q-S--Y 114 (577)
Q Consensus 44 ~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~---~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG---~-~--~ 114 (577)
.+....-+.++| .++|+|++++||+|+|+|+|.+. ....||+||...+..+.+||++.++|++|.|+ + . .
T Consensus 37 ~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 37 PGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCcccee
Confidence 345566777888 56899999999999999999964 44566666665544445899999999999884 1 1 3
Q ss_pred EEEEEECCCceeeEEeccccccc-ccceEeEEEe
Q 008109 115 IYNFTIVGQRGTLWWHAHISWLR-STLYGPIIIL 147 (577)
Q Consensus 115 ~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~ 147 (577)
+++|+. .++||||||||..+++ +||+|.|||+
T Consensus 116 ~~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 445554 5899999999998888 7999999995
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.63 E-value=9.8e-14 Score=140.42 Aligned_cols=247 Identities=16% Similarity=0.089 Sum_probs=151.8
Q ss_pred CCeEEEcCcCCCCCCCCCCceeEEEEecCCEEEEEEEecCCC-CcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCce
Q 008109 192 SDAYTFNGLPGPLYNCSAKDTFKLKVKSGKTYLLRLVNSALN-DDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQT 270 (577)
Q Consensus 192 ~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~-~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR 270 (577)
.+.+++||+. +.|.|++++|+++++++.|.... ..+.+++|++. +.||... ...|.||++
T Consensus 47 ~~~~~~nG~~---------pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t 107 (311)
T TIGR02376 47 YQAMTFDGSV---------PGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGET 107 (311)
T ss_pred EEEEEECCcc---------cCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCe
Confidence 3678999985 45899999999999999998632 45678998874 4577521 223899999
Q ss_pred EEEEEEeCCCCCCceEEEEeeecccCCCCCCCCceEEEEEEecCCCccccCCCCCCCCCcCCCCCCCCCccccccccccc
Q 008109 271 TNVLLETKPHYPSATFFMTARPYVTGLGTFDNSTVAGILEYEKPLNFIHSGNSIKKLPLFKPILPPLNDTNFVTNFVNKL 350 (577)
Q Consensus 271 ~dv~v~~~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l 350 (577)
+.+.++++++ |+||++|+........ ......+.|.++.... . + .. +. ++.--+
T Consensus 108 ~ty~F~~~~~---Gty~YH~H~~~~~~~q-~~~Gl~G~liV~~~~~-------------~-~---~~-d~----e~~l~l 161 (311)
T TIGR02376 108 ATLRFKATRP---GAFVYHCAPPGMVPWH-VVSGMNGAIMVLPREG-------------L-P---EY-DK----EYYIGE 161 (311)
T ss_pred EEEEEEcCCC---EEEEEEcCCCCchhHH-hhcCcceEEEeeccCC-------------C-c---Cc-ce----eEEEee
Confidence 9999999876 9999999953210000 1123344444543210 0 1 00 00 000001
Q ss_pred cccCCCCCCCCCCCCCcceEEEEeccCccCCCCCCcccCCCCCeeEEEecceeccCCchhhhhhhhcCCCCCcccCCCCC
Q 008109 351 RSLGSAQFPANVPQNVDKRFFFTVGLGTSPCPRNQTCQGPNGTMFEASINNISFVMPTTALLQAHFTGQSNGVYVPDFPT 430 (577)
Q Consensus 351 ~~l~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~s~~~p~~~~l~~~~~~~~~g~~~~~~~~ 430 (577)
+.+..... ......+... ... .....+ -.+.+||+... +
T Consensus 162 ~d~~~~~~-----~~~~~~~~~~--~~~--------~~~~~~--~~~~iNG~~~~------------------~------ 200 (311)
T TIGR02376 162 SDLYTPKD-----EGEGGAYEDD--VAA--------MRTLTP--THVVFNGAVGA------------------L------ 200 (311)
T ss_pred eeEecccc-----ccccccccch--HHH--------HhcCCC--CEEEECCccCC------------------C------
Confidence 11100000 0000000000 000 000000 12345554210 0
Q ss_pred CCCccccCCCCCCCCccccCCceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCC
Q 008109 431 SPLIPFNYTGNPPNNTMVSSGTKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVD 510 (577)
Q Consensus 431 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~ 510 (577)
.....++.|++++|+|.|.+ ....+.||++|++|+++....+. ..
T Consensus 201 ---------------------~~~~~v~~G~~~RlRiiNa~--~~~~~~~~~~g~~~~~v~~DG~~------------~~ 245 (311)
T TIGR02376 201 ---------------------TGDNALTAGVGERVLFVHSQ--PNRDSRPHLIGGHGDYVWVTGKF------------AN 245 (311)
T ss_pred ---------------------CCCcccccCCcEEEEEEcCC--CCCCCCCeEecCCceEEEECCcc------------cC
Confidence 01125678999999999975 24678999999999999984221 12
Q ss_pred CC--eeeeEEeCCCcEEEEEEEecCceeEEEeeechhhh-hcccEEEEEEec
Q 008109 511 PI--ERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHT-SWGLKTAWLVLD 559 (577)
Q Consensus 511 p~--~rDTv~vp~~~~v~irf~adnpG~w~~HCHil~H~-d~GM~~~~~V~~ 559 (577)
+. ..||+.|.||+...|.++++.||.|++|||...|. ..||+++|+|+.
T Consensus 246 ~~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g 297 (311)
T TIGR02376 246 PPNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEG 297 (311)
T ss_pred CCCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECC
Confidence 22 36899999999999999999999999999999998 779999998864
No 23
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.61 E-value=7e-15 Score=126.60 Aligned_cols=115 Identities=15% Similarity=0.117 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHhcccceeeeeEEEEEEEE--EEEe---ccCceeeEEE-EECCCCCCCeEEEecCCEEEEEEEeCCCC
Q 008109 7 LMGFVLLTVLSLCLLPESVLAITRHYKFNVE--LKNV---TRLCHTKTLV-SVNGQFPGPRIVAREGDRLLIKVVNHVQH 80 (577)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~---~~~g~~~~~~-~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~ 80 (577)
+.|+||..+++.+|++..+.|..++|+++|. ...+ +..|+....+ ++|+++..+.|+|++||+|+++++|..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~ 81 (135)
T TIGR03096 2 ITKAMFAGFALGLLLMGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPI 81 (135)
T ss_pred hhHHHhHHHHHHHhhccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCC
Confidence 5789999999999999999999999999999 6655 3468776666 99999999999999999999999999875
Q ss_pred ce--eeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEeccccccc
Q 008109 81 NI--SIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHISWLR 137 (577)
Q Consensus 81 ~~--~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~ 137 (577)
++ .+++||. +..|.||++.+|+|++ +++|+|||||-.|...
T Consensus 82 ~H~f~i~~~gi---------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP~~ 124 (135)
T TIGR03096 82 SEGFSIDAYGI---------------SEVIKAGETKTISFKA-DKAGAFTIWCQLHPKN 124 (135)
T ss_pred ccceEECCCCc---------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCCChh
Confidence 44 3333321 2468999999999996 9999999999887644
No 24
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.59 E-value=9.8e-14 Score=150.81 Aligned_cols=226 Identities=14% Similarity=0.187 Sum_probs=145.8
Q ss_pred EEECCCCCC--CeEEEecCCEEEEEEEeCCC-CceeeeEcceeccCCCCCCCCCC----ccccccCCCCeEEEEEEECCC
Q 008109 51 VSVNGQFPG--PRIVAREGDRLLIKVVNHVQ-HNISIHWHGIRQLRSGWADGPAY----ITQCPIQTGQSYIYNFTIVGQ 123 (577)
Q Consensus 51 ~~~ng~~pg--P~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~PG~~~~Y~~~~~~~ 123 (577)
+++||+.+. +++.+++|+++|+||.|... ....+++.|+.+.... .||.+- +....|.|||+++..++. ..
T Consensus 249 ~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa-~DG~~v~Pv~vd~l~I~pGeRyDVlV~~-~~ 326 (587)
T TIGR01480 249 YLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVA-VDGQYVHPVSVDEFRIAPAETFDVIVEP-TG 326 (587)
T ss_pred EEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEE-cCCcCcCceEeCeEEEcCcceeEEEEec-CC
Confidence 779999863 68999999999999999985 4577888888765433 788542 456789999999999996 56
Q ss_pred ceeeEEecccccccccceEeEEEeCCC-CCCCC-CCCC----CCeee------------EEee-----cc----------
Q 008109 124 RGTLWWHAHISWLRSTLYGPIIILPKR-GIPYP-FAKP----YKEVP------------IVFG-----EW---------- 170 (577)
Q Consensus 124 ~Gt~wYH~H~~~~~~Gl~G~liV~~~~-~~~~~-~~~~----~~e~~------------l~~~-----d~---------- 170 (577)
.|.|+..+...+. .|...+.+..... ..+.| .... -.+.- +.+. |-
T Consensus 327 ~g~~~i~a~~~~~-~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (587)
T TIGR01480 327 DDAFTIFAQDSDR-TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPM 405 (587)
T ss_pred CceEEEEEEecCC-CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccC
Confidence 7899998865432 2333333332211 11111 0000 00000 0000 00
Q ss_pred ccc----------------------------------------cHHHHH-HHhhhC------CCCCC-----------CC
Q 008109 171 FKS----------------------------------------DTEAII-NQALQT------GGGPN-----------VS 192 (577)
Q Consensus 171 ~~~----------------------------------------~~~~~~-~~~~~~------~~~~~-----------~~ 192 (577)
.+. ...... ...+.. ...+. ..
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~m~~ 485 (587)
T TIGR01480 406 DHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGNMER 485 (587)
T ss_pred ccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCCCce
Confidence 000 000000 000000 00010 11
Q ss_pred CeEEEcCcCCCCCCCCCCceeEEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCceEE
Q 008109 193 DAYTFNGLPGPLYNCSAKDTFKLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQTTN 272 (577)
Q Consensus 193 ~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~d 272 (577)
..++|||+.++ +.+.|.++.|+++||||+|.+. ..+.+|+|||.|.++..||.+ +...|++.|.|||+++
T Consensus 486 ~~wtiNG~~~~-------~~~pl~v~~Gervri~l~N~t~-~~HpmHlHG~~f~v~~~~G~~--~~~~dTv~V~Pg~t~~ 555 (587)
T TIGR01480 486 FAWSFDGEAFG-------LKTPLRFNYGERLRVVLVNDTM-MAHPIHLHGMWSELEDGQGEF--QVRKHTVDVPPGGKRS 555 (587)
T ss_pred eEEEECCccCC-------CCCceEecCCCEEEEEEECCCC-CCcceeEcCceeeeecCCCcc--cccCCceeeCCCCEEE
Confidence 24899999753 2346899999999999999885 455799999999999888863 2235889999999999
Q ss_pred EEEEeCCCCCCceEEEEeee
Q 008109 273 VLLETKPHYPSATFFMTARP 292 (577)
Q Consensus 273 v~v~~~~~~~~g~y~l~~~~ 292 (577)
+.|+++++ |+|+++|+.
T Consensus 556 ~~f~ad~p---G~w~~HCH~ 572 (587)
T TIGR01480 556 FRVTADAL---GRWAYHCHM 572 (587)
T ss_pred EEEECCCC---eEEEEcCCC
Confidence 99999998 999999985
No 25
>PRK10965 multicopper oxidase; Provisional
Probab=99.40 E-value=3.3e-11 Score=130.19 Aligned_cols=236 Identities=12% Similarity=0.128 Sum_probs=143.7
Q ss_pred eeEEEEECCCCCCCeEEEecCCEEEEEEEeCCC-CceeeeE-cceeccCCCCCCCCCC-----ccccccCCCCeEEEEEE
Q 008109 47 TKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQ-HNISIHW-HGIRQLRSGWADGPAY-----ITQCPIQTGQSYIYNFT 119 (577)
Q Consensus 47 ~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~~iH~-HG~~~~~~~~~DGv~~-----~tq~~i~PG~~~~Y~~~ 119 (577)
....+++||+. .|.+.+. |.++|+||.|... ....+.+ .|....-.. .||.+- ++...|.|||+++..++
T Consensus 211 ~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa-~DG~~l~~P~~v~~l~lapGeR~dvlv~ 287 (523)
T PRK10965 211 FGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIA-SDGGLLAEPVKVSELPILMGERFEVLVD 287 (523)
T ss_pred cCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEE-eCCCcccCccEeCeEEECccceEEEEEE
Confidence 44678999996 6888885 6799999999984 5556666 444322211 788432 34567999999999999
Q ss_pred ECCCceeeEEecccccccccc--------eEeEEEeCCC--C-CCCC-----CC---C----CCCeeeEEeecccc----
Q 008109 120 IVGQRGTLWWHAHISWLRSTL--------YGPIIILPKR--G-IPYP-----FA---K----PYKEVPIVFGEWFK---- 172 (577)
Q Consensus 120 ~~~~~Gt~wYH~H~~~~~~Gl--------~G~liV~~~~--~-~~~~-----~~---~----~~~e~~l~~~d~~~---- 172 (577)
. .+.|.++...-.... .|+ +-.+.|.... . ...| .+ . ..+.+.|.+..+..
T Consensus 288 ~-~~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m 365 (523)
T PRK10965 288 T-SDGKAFDLVTLPVSQ-MGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGM 365 (523)
T ss_pred c-CCCceEEEEEecccC-cccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhh
Confidence 7 556777776542211 111 1122233111 1 0111 00 0 01223333321100
Q ss_pred -----ccHHHHHHH--------hh--------hCC---CCC--CCCCeEEEcCcCCCCCCCCCCceeEEEEecCCEEEEE
Q 008109 173 -----SDTEAIINQ--------AL--------QTG---GGP--NVSDAYTFNGLPGPLYNCSAKDTFKLKVKSGKTYLLR 226 (577)
Q Consensus 173 -----~~~~~~~~~--------~~--------~~~---~~~--~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlR 226 (577)
......... .+ ..+ ..+ .....++|||+.++. ..+.++++.|++++|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~------~~~~~~~~~G~~e~w~ 439 (523)
T PRK10965 366 QMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDM------NKPMFAAKKGQYERWV 439 (523)
T ss_pred hhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECCC------CCcceecCCCCEEEEE
Confidence 000000000 00 000 000 000124899998642 3467899999999999
Q ss_pred EEecCCCCcEEEEEcCceeEEEEeCCcccC---ceEEeEEEECCCceEEEEEEeCCCC-CCceEEEEeeecc
Q 008109 227 LVNSALNDDLFFSIANHTLTVVEVDAVYVK---PFETETLVITPGQTTNVLLETKPHY-PSATFFMTARPYV 294 (577)
Q Consensus 227 liN~~~~~~~~~~i~gh~~~via~DG~~v~---P~~~d~l~l~pgeR~dv~v~~~~~~-~~g~y~l~~~~~~ 294 (577)
|+|.+....+.|||||++|+|++.||.+.. +..+|++.|.+ ++++++++++.+. ..|.|.++|+-+.
T Consensus 440 i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~ 510 (523)
T PRK10965 440 ISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLE 510 (523)
T ss_pred EEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchh
Confidence 999996566789999999999999999774 35689999976 8899999998541 1279999999654
No 26
>PRK10883 FtsI repressor; Provisional
Probab=99.30 E-value=1.4e-10 Score=124.15 Aligned_cols=223 Identities=13% Similarity=0.118 Sum_probs=136.6
Q ss_pred eeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCC-CceeeeE-cceeccCCCCCCCCCC-----ccccccCCCCeEEEEE
Q 008109 46 HTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQ-HNISIHW-HGIRQLRSGWADGPAY-----ITQCPIQTGQSYIYNF 118 (577)
Q Consensus 46 ~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~~iH~-HG~~~~~~~~~DGv~~-----~tq~~i~PG~~~~Y~~ 118 (577)
.....+++||+. .|.|.|+.| ++|+||.|... ....+++ +|....-.. .||-+. +++..|.|||+++..+
T Consensus 207 ~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa-~DGg~~~~P~~~~~l~l~pGeR~dvlV 283 (471)
T PRK10883 207 FVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIA-GDQGFLPAPVSVKQLSLAPGERREILV 283 (471)
T ss_pred ccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEE-eCCCcccCCcEeCeEEECCCCeEEEEE
Confidence 345678999995 699999875 89999999985 5677887 555332222 685321 4567899999999999
Q ss_pred EECCCceeeEEeccccc-ccccceE------------eEEEeCCCCCCCCCCCCCCeeeEEeeccccccHHHHHHH-hhh
Q 008109 119 TIVGQRGTLWWHAHISW-LRSTLYG------------PIIILPKRGIPYPFAKPYKEVPIVFGEWFKSDTEAIINQ-ALQ 184 (577)
Q Consensus 119 ~~~~~~Gt~wYH~H~~~-~~~Gl~G------------~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~-~~~ 184 (577)
++ .+.+.+.+++-... ....+.+ .+-++...... .. ....+..+......... .... .+.
T Consensus 284 d~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~p~~l~~~~~~~~~-~~~~~~~~ 357 (471)
T PRK10883 284 DM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LV---TDNLPMRLLPDEIMEGS-PIRSREIS 357 (471)
T ss_pred EC-CCCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CC---CCcCChhhcCCCCCCCC-CcceEEEE
Confidence 97 55667777763211 1111111 11111111000 00 00001000000000000 0000 000
Q ss_pred CCCCCCCCCeEEEcCcCCCCCCCCCCceeEEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCc---eEEe
Q 008109 185 TGGGPNVSDAYTFNGLPGPLYNCSAKDTFKLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKP---FETE 261 (577)
Q Consensus 185 ~~~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P---~~~d 261 (577)
- ..+.+.|||+.++. ..+.++++.|++++|+|.|.. .+.||||+++|+|++.||....| -.+|
T Consensus 358 l-----~~~~~~INg~~~~~------~~~~~~~~~g~~e~W~~~n~~---~HP~HlHg~~FqVl~~~G~~~~~~~~gwkD 423 (471)
T PRK10883 358 L-----GDDLPGINGALWDM------NRIDVTAQQGTWERWTVRADM---PQAFHIEGVMFLIRNVNGAMPFPEDRGWKD 423 (471)
T ss_pred e-----cCCcCccCCcccCC------CcceeecCCCCEEEEEEECCC---CcCEeECCccEEEEEecCCCCCccccCcCc
Confidence 0 01223699998642 334578999999999998863 56899999999999999986543 4579
Q ss_pred EEEECCCceEEEEEEeCCCCCCc---eEEEEeeeccc
Q 008109 262 TLVITPGQTTNVLLETKPHYPSA---TFFMTARPYVT 295 (577)
Q Consensus 262 ~l~l~pgeR~dv~v~~~~~~~~g---~y~l~~~~~~~ 295 (577)
++.| + ++++|+++++.+. + .|+++|+-+.-
T Consensus 424 TV~v-~-~~v~i~~~f~~~~--~~~~~~m~HCHiLeH 456 (471)
T PRK10883 424 TVWV-D-GQVELLVYFGQPS--WAHFPFLFYSQTLEM 456 (471)
T ss_pred EEEc-C-CeEEEEEEecCCC--CCCCcEEeecccccc
Confidence 9999 3 5799999999873 3 79999997543
No 27
>PLN02835 oxidoreductase
Probab=99.26 E-value=4e-10 Score=122.19 Aligned_cols=239 Identities=14% Similarity=0.136 Sum_probs=147.6
Q ss_pred eEEEEECCCCCCCeEEEecCCEEEEEEEeCCC-CceeeeEcceeccCCCCCCCCCC----ccccccCCCCeEEEEEEECC
Q 008109 48 KTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQ-HNISIHWHGIRQLRSGWADGPAY----ITQCPIQTGQSYIYNFTIVG 122 (577)
Q Consensus 48 ~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~PG~~~~Y~~~~~~ 122 (577)
...+++||+. .+++.+++|+++|+||.|... ....+|+.|..+.-.. .||.+- +....|.||||++..+++.+
T Consensus 191 ~d~~liNG~~-~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~-~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQT-QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVE-VEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEcccc-CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEE-ECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 4678999996 489999999999999999985 5788888888775432 799642 33467999999999999866
Q ss_pred CceeeEEecccccccccceEeEEEeCCCCC-----CCCC-CCCCC--------eeeEEeeccccccHH---H-H--H--H
Q 008109 123 QRGTLWWHAHISWLRSTLYGPIIILPKRGI-----PYPF-AKPYK--------EVPIVFGEWFKSDTE---A-I--I--N 180 (577)
Q Consensus 123 ~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~-----~~~~-~~~~~--------e~~l~~~d~~~~~~~---~-~--~--~ 180 (577)
.+|.||...-.......+.+.-|++..... +.|. +..+. .....+......... . . . .
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 689999986421111112222233322210 1110 00000 000001000000000 0 0 0 0
Q ss_pred Hhh-hCCCCC--CCCCeEEEcCcCCCCCC---------------CCC------------CceeEEEEecCCEEEEEEEec
Q 008109 181 QAL-QTGGGP--NVSDAYTFNGLPGPLYN---------------CSA------------KDTFKLKVKSGKTYLLRLVNS 230 (577)
Q Consensus 181 ~~~-~~~~~~--~~~~~~liNG~~~~~~~---------------~~~------------~~~~~l~v~~G~~~rlRliN~ 230 (577)
... ...... .....+.+||..+.... |.. ...-.+.++.|+++.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 000 000000 00135678888753100 100 011245677789999999998
Q ss_pred CCCCcEEEEEcCceeEEEEe-CCcc----------cCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeee
Q 008109 231 ALNDDLFFSIANHTLTVVEV-DAVY----------VKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARP 292 (577)
Q Consensus 231 ~~~~~~~~~i~gh~~~via~-DG~~----------v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 292 (577)
+.. .+.||||||.|+|++. +|.+ ..|...|++.+.++..+.+.|.+++| |.|.++|+.
T Consensus 429 ~~~-~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNP---G~Wl~HCHi 497 (539)
T PLN02835 429 EKT-MQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQ---GMWNMRSAI 497 (539)
T ss_pred CCC-CCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCC---EEeeeeecc
Confidence 744 4579999999999987 5522 24889999999999999999999999 999999996
No 28
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.21 E-value=1.7e-09 Score=118.18 Aligned_cols=240 Identities=14% Similarity=0.146 Sum_probs=144.1
Q ss_pred EEEEECCCCC---------CCeEEEecCCEEEEEEEeCCC-CceeeeEcceeccCCCCCCCCCC----ccccccCCCCeE
Q 008109 49 TLVSVNGQFP---------GPRIVAREGDRLLIKVVNHVQ-HNISIHWHGIRQLRSGWADGPAY----ITQCPIQTGQSY 114 (577)
Q Consensus 49 ~~~~~ng~~p---------gP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~PG~~~ 114 (577)
..+++||+.- -++|.|++|+++|+||.|... ....+|.+|..+.-.. .||++- +....|.|||++
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa-~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVE-VDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEE-eCCcccCceEeCeEEecCCCEE
Confidence 5689999841 148999999999999999974 5567888888765433 799642 345679999999
Q ss_pred EEEEEECCCceeeEEeccccc--c--cccceE-eEEEe-CCCCCCCCCCC----CCC-----e----e-eEEeecccc--
Q 008109 115 IYNFTIVGQRGTLWWHAHISW--L--RSTLYG-PIIIL-PKRGIPYPFAK----PYK-----E----V-PIVFGEWFK-- 172 (577)
Q Consensus 115 ~Y~~~~~~~~Gt~wYH~H~~~--~--~~Gl~G-~liV~-~~~~~~~~~~~----~~~-----e----~-~l~~~d~~~-- 172 (577)
+..+++.+.+|.||.+.+... . .....+ +++.. +......+... .+. + . .+....+-.
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 999998555899999987521 1 111112 23332 22111111000 000 0 0 000000000
Q ss_pred -ccHHH----HHHHhhhCCC-----CC-CCCCeEEEcCcCCCC---------------------------CCC-CCC---
Q 008109 173 -SDTEA----IINQALQTGG-----GP-NVSDAYTFNGLPGPL---------------------------YNC-SAK--- 210 (577)
Q Consensus 173 -~~~~~----~~~~~~~~~~-----~~-~~~~~~liNG~~~~~---------------------------~~~-~~~--- 210 (577)
..... .+........ .. ...-.+.|||+.+.. .-| ++.
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 00000 0000000000 00 000134677775310 001 000
Q ss_pred -------ceeEEEEecCCEEEEEEEecCC--CCcEEEEEcCceeEEEEeC-Ccc-----------cCceEEeEEEECCCc
Q 008109 211 -------DTFKLKVKSGKTYLLRLVNSAL--NDDLFFSIANHTLTVVEVD-AVY-----------VKPFETETLVITPGQ 269 (577)
Q Consensus 211 -------~~~~l~v~~G~~~rlRliN~~~--~~~~~~~i~gh~~~via~D-G~~-----------v~P~~~d~l~l~pge 269 (577)
....+.++.|+++++.|.|.+. ...+.||||||.|+|++.+ |.+ ..|...|++.+.++.
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCc
Confidence 1135788899999999999853 3367899999999999886 321 147788999999999
Q ss_pred eEEEEEEeCCCCCCceEEEEeee
Q 008109 270 TTNVLLETKPHYPSATFFMTARP 292 (577)
Q Consensus 270 R~dv~v~~~~~~~~g~y~l~~~~ 292 (577)
-+-+.+++++| |.|.++|+-
T Consensus 486 ~vvirf~adNP---G~W~~HCHi 505 (539)
T TIGR03389 486 WAAIRFVADNP---GVWFMHCHL 505 (539)
T ss_pred eEEEEEecCCC---eEEEEEecc
Confidence 99999999999 999999995
No 29
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.20 E-value=5.7e-10 Score=119.80 Aligned_cols=234 Identities=16% Similarity=0.114 Sum_probs=149.5
Q ss_pred ceeeEEEEECCCCCCCeEEEecCCEEEEEEEeCC-CCceeeeEcceeccCCCCCCCCC----CccccccCCCCeEEEEEE
Q 008109 45 CHTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHV-QHNISIHWHGIRQLRSGWADGPA----YITQCPIQTGQSYIYNFT 119 (577)
Q Consensus 45 g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DGv~----~~tq~~i~PG~~~~Y~~~ 119 (577)
+.......+||+. -| +...++..+++||.|.. .....+++.|.+..... .||.+ .+.+..+.|||+++...+
T Consensus 186 ~~~g~~~~vnG~~-~p-~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~-~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LP-FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIA-VDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-cc-eeecCCCeEEEEEEecCCceEEEEEecCceEEEEE-eCCcCcCceeeeeEEecCcceEEEEEE
Confidence 4556677788854 24 44555555999999999 77788888876655433 68855 567788999999999999
Q ss_pred ECCCceeeEEecccccccccceEeEEEeCCCCCCCCC-------CCCC---CeeeEEeeccccccHHHHHHHhhhCCCCC
Q 008109 120 IVGQRGTLWWHAHISWLRSTLYGPIIILPKRGIPYPF-------AKPY---KEVPIVFGEWFKSDTEAIINQALQTGGGP 189 (577)
Q Consensus 120 ~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~-------~~~~---~e~~l~~~d~~~~~~~~~~~~~~~~~~~~ 189 (577)
. ...|++-+.+.......-+.+..-.........+. ...+ ................. ......-...
T Consensus 263 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~ 339 (451)
T COG2132 263 M-NDGGAVTLTALGEDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPN--RDTDFHLIGG 339 (451)
T ss_pred c-CCCCeEEEEeccccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCccc--ccccchhhcc
Confidence 7 55899999998722112222222211111000000 0011 11111111111111100 0000000001
Q ss_pred CCCCeEEEcCcCCCCCCCCCCceeEEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCccc--CceEEeEEEECC
Q 008109 190 NVSDAYTFNGLPGPLYNCSAKDTFKLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYV--KPFETETLVITP 267 (577)
Q Consensus 190 ~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v--~P~~~d~l~l~p 267 (577)
.....+.+||+.++. ....+.++.|+++||+|.|-+. ..+.||+||+.|.|++.|.... .+..+|++.+.|
T Consensus 340 ~~~~~~~~n~~~~~~------~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~~~~~~~~~~~kDTv~v~~ 412 (451)
T COG2132 340 IGGYVWAINGKAFDD------NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGDAPAPGAAPGWKDTVLVAP 412 (451)
T ss_pred cccccccccCccCCC------CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecCCCcccccCccceEEEeCC
Confidence 122457888887642 2567899999999999999998 6667999999999999992221 467899999999
Q ss_pred CceEEEEEEeCCCCCCceEEEEeeecc
Q 008109 268 GQTTNVLLETKPHYPSATFFMTARPYV 294 (577)
Q Consensus 268 geR~dv~v~~~~~~~~g~y~l~~~~~~ 294 (577)
++|+.+.++++.+ |.|.++|+...
T Consensus 413 ~~~~~v~~~a~~~---g~~~~HCH~l~ 436 (451)
T COG2132 413 GERLLVRFDADYP---GPWMFHCHILE 436 (451)
T ss_pred CeEEEEEEeCCCC---CceEEeccchh
Confidence 9999999999998 89999999643
No 30
>PLN02604 oxidoreductase
Probab=99.00 E-value=2.4e-09 Score=117.39 Aligned_cols=92 Identities=21% Similarity=0.313 Sum_probs=71.4
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEec
Q 008109 453 KLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLAD 532 (577)
Q Consensus 453 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~ad 532 (577)
+++.++.|+++++.+.|.. ....|+||+||... .+. .-.+. ...-....|+||+...++|+++
T Consensus 55 P~i~~~~Gd~v~v~v~N~l--~~~~~~iH~HG~~~--~~~--~~~DG-----------~~~~tq~~i~pg~s~~y~f~~~ 117 (566)
T PLN02604 55 PTILAQQGDTVIVELKNSL--LTENVAIHWHGIRQ--IGT--PWFDG-----------TEGVTQCPILPGETFTYEFVVD 117 (566)
T ss_pred CcEEEECCCEEEEEEEeCC--CCCCCCEEeCCCCC--CCC--ccccC-----------CCccccCccCCCCeEEEEEEcC
Confidence 4578899999999999963 23689999999942 111 00010 0112345789999999999999
Q ss_pred CceeEEEeeechhhhhcccEEEEEEecCC
Q 008109 533 NPGVWFMHCHLEVHTSWGLKTAWLVLDGK 561 (577)
Q Consensus 533 npG~w~~HCHil~H~d~GM~~~~~V~~~~ 561 (577)
++|.|.||||...|++.||+..|.|.++.
T Consensus 118 ~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 118 RPGTYLYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred CCEEEEEeeCcHHHHhCCCeEEEEEEecC
Confidence 99999999999999999999999998654
No 31
>PLN02168 copper ion binding / pectinesterase
Probab=98.98 E-value=8.7e-08 Score=103.94 Aligned_cols=240 Identities=15% Similarity=0.179 Sum_probs=144.5
Q ss_pred eEEEEECCCCC-CCeEEEecCCEEEEEEEeCCC-CceeeeEcceeccCCCCCCCCC----CccccccCCCCeEEEEEEEC
Q 008109 48 KTLVSVNGQFP-GPRIVAREGDRLLIKVVNHVQ-HNISIHWHGIRQLRSGWADGPA----YITQCPIQTGQSYIYNFTIV 121 (577)
Q Consensus 48 ~~~~~~ng~~p-gP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~----~~tq~~i~PG~~~~Y~~~~~ 121 (577)
...+++||+.+ .|+|.+++|+++|+||.|... ....+++.|..+.-.. .||.+ -+.+..|.||||++..+++.
T Consensus 188 ~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydvlv~a~ 266 (545)
T PLN02168 188 PDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVE-TEGTYVQKRVYSSLDIHVGQSYSVLVTAK 266 (545)
T ss_pred CCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEE-ECCeECCCceeeEEEEcCCceEEEEEEcC
Confidence 35689999953 489999999999999999984 4577888887765443 78853 24467899999999999985
Q ss_pred CCc-e---eeEEecccccccccceE-eEEEeCCCCCC--CCCC---CC-CC----eeeEEee-ccc---cccH-HH---H
Q 008109 122 GQR-G---TLWWHAHISWLRSTLYG-PIIILPKRGIP--YPFA---KP-YK----EVPIVFG-EWF---KSDT-EA---I 178 (577)
Q Consensus 122 ~~~-G---t~wYH~H~~~~~~Gl~G-~liV~~~~~~~--~~~~---~~-~~----e~~l~~~-d~~---~~~~-~~---~ 178 (577)
+++ | .||...-.......+.+ +++..+..... .|.+ .. +. +..+.+. ... .... .. .
T Consensus 267 ~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~ 346 (545)
T PLN02168 267 TDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHY 346 (545)
T ss_pred CCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccc
Confidence 443 4 89998765211111222 33333222110 1111 00 00 1000000 000 0000 00 0
Q ss_pred ----HHHhh-hCCCC--CCCCCeEEEcCcCCCC----------CCC-----CC--C----------ceeEEEEecCCEEE
Q 008109 179 ----INQAL-QTGGG--PNVSDAYTFNGLPGPL----------YNC-----SA--K----------DTFKLKVKSGKTYL 224 (577)
Q Consensus 179 ----~~~~~-~~~~~--~~~~~~~liNG~~~~~----------~~~-----~~--~----------~~~~l~v~~G~~~r 224 (577)
..... ..... ......+.|||..+.. +.. ++ . ..-.+.++.|++|.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~Ve 426 (545)
T PLN02168 347 GRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYH 426 (545)
T ss_pred cccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEE
Confidence 00000 00000 0001346788887531 100 00 0 12346788899998
Q ss_pred EEEEecCCCCcEEEEEcCceeEEEEe-----CC------cccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeee
Q 008109 225 LRLVNSALNDDLFFSIANHTLTVVEV-----DA------VYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARP 292 (577)
Q Consensus 225 lRliN~~~~~~~~~~i~gh~~~via~-----DG------~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 292 (577)
+=|-|... ..+.||||||.|+|++. |+ ++..|...|++.+.++.=+-+.+++++| |.|.++|+-
T Consensus 427 iViqn~~~-~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNP---G~Wl~HCHi 501 (545)
T PLN02168 427 IVFQNPLF-SLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQ---GMWNVRSQK 501 (545)
T ss_pred EEEeCCCC-CCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCC---eEEeeeecC
Confidence 88888764 35679999999999976 21 2246889999999999999999999999 999999993
No 32
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.94 E-value=1.1e-07 Score=104.12 Aligned_cols=228 Identities=14% Similarity=0.107 Sum_probs=134.6
Q ss_pred eEEEecCCEEEEEEEeCC-CCceeeeEcceeccCCCCCCCCCC----ccccccCCCCeEEEEEEECCCc-eeeEEecccc
Q 008109 61 RIVAREGDRLLIKVVNHV-QHNISIHWHGIRQLRSGWADGPAY----ITQCPIQTGQSYIYNFTIVGQR-GTLWWHAHIS 134 (577)
Q Consensus 61 ~i~v~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~PG~~~~Y~~~~~~~~-Gt~wYH~H~~ 134 (577)
.|.|++|+++|+||.|.. .....+++.|..+.-.. .||.+- +....|.||||++..+++.+.+ |.||.+.-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa-~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVE-ADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEEEE-eCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 589999999999999987 46677777777665432 788542 3456799999999999984334 5899987654
Q ss_pred ccc--ccceEeEEEeCCCCCCC-C-C-----CCCC-------CeeeEEeeccccccHHHHHHH-h-hhCCCCCCCCCeEE
Q 008109 135 WLR--STLYGPIIILPKRGIPY-P-F-----AKPY-------KEVPIVFGEWFKSDTEAIINQ-A-LQTGGGPNVSDAYT 196 (577)
Q Consensus 135 ~~~--~Gl~G~liV~~~~~~~~-~-~-----~~~~-------~e~~l~~~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~l 196 (577)
+.. .....+++......... + . +..+ .+..++-..-........... . ............+.
T Consensus 283 ~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (541)
T TIGR03388 283 GRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKWA 362 (541)
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEEE
Confidence 331 11112444432211100 0 0 0000 000000000000000000000 0 00000000112356
Q ss_pred EcCcCCCC-------------------------CCCC-------C-----CceeEEEEecCCEEEEEEEecCC-----CC
Q 008109 197 FNGLPGPL-------------------------YNCS-------A-----KDTFKLKVKSGKTYLLRLVNSAL-----ND 234 (577)
Q Consensus 197 iNG~~~~~-------------------------~~~~-------~-----~~~~~l~v~~G~~~rlRliN~~~-----~~ 234 (577)
+||..+.. +.|. . ...-++.++.|++|.+.|.|... ..
T Consensus 363 ~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~ 442 (541)
T TIGR03388 363 INNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSE 442 (541)
T ss_pred ECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCC
Confidence 77765420 0000 0 01124788899999999999752 34
Q ss_pred cEEEEEcCceeEEEEeC-Ccc-----------cCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeee
Q 008109 235 DLFFSIANHTLTVVEVD-AVY-----------VKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARP 292 (577)
Q Consensus 235 ~~~~~i~gh~~~via~D-G~~-----------v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 292 (577)
.+.||||||.|+|++.. |.+ ..|...|++.+.++.-+-|.+++++| |-|.++|+.
T Consensus 443 ~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNP---G~W~~HCHi 509 (541)
T TIGR03388 443 THPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNP---GVWAFHCHI 509 (541)
T ss_pred CCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCC---eEeeeeccc
Confidence 57899999999999986 432 14778899999999999999999999 999999995
No 33
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.94 E-value=7.1e-08 Score=105.28 Aligned_cols=240 Identities=16% Similarity=0.165 Sum_probs=140.5
Q ss_pred EEEEECCCC---------------CCCeEEEecCCEEEEEEEeCCC-CceeeeEccee-ccCCCCCCCCCC----ccccc
Q 008109 49 TLVSVNGQF---------------PGPRIVAREGDRLLIKVVNHVQ-HNISIHWHGIR-QLRSGWADGPAY----ITQCP 107 (577)
Q Consensus 49 ~~~~~ng~~---------------pgP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~-~~~~~~~DGv~~----~tq~~ 107 (577)
..+++||+. ..|+|+|++|+++|+||.|... ....+++.|.. +.... .||++- +....
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa-~DG~~~~P~~v~~l~ 250 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIE-ADGSYTKPAKIDHLQ 250 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEE-eCCCCCCceEeCeEE
Confidence 467899983 1278999999999999999985 45677777766 43322 798642 33467
Q ss_pred cCCCCeEEEEEEECCC-------ceeeEEecccccccccceEeEEEeC--CCCCCCC---CC---CC------CCeeeEE
Q 008109 108 IQTGQSYIYNFTIVGQ-------RGTLWWHAHISWLRSTLYGPIIILP--KRGIPYP---FA---KP------YKEVPIV 166 (577)
Q Consensus 108 i~PG~~~~Y~~~~~~~-------~Gt~wYH~H~~~~~~Gl~G~liV~~--~~~~~~~---~~---~~------~~e~~l~ 166 (577)
|.||||++..+++.+. +|-||...-.......+.+.-|++- ......+ .. .. ..+.-+.
T Consensus 251 l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~ 330 (538)
T TIGR03390 251 LGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYELE 330 (538)
T ss_pred EccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheeeE
Confidence 9999999999998432 4889987543221111222223332 2111111 00 00 0011010
Q ss_pred -eecccc---ccHHHHHHHh-hhCCC--CC-CCCCeEEEcCcCCCC-----------CC----C------------CCCc
Q 008109 167 -FGEWFK---SDTEAIINQA-LQTGG--GP-NVSDAYTFNGLPGPL-----------YN----C------------SAKD 211 (577)
Q Consensus 167 -~~d~~~---~~~~~~~~~~-~~~~~--~~-~~~~~~liNG~~~~~-----------~~----~------------~~~~ 211 (577)
+..-.. .......... ...+. .. .....+++||..+.. +. . ....
T Consensus 331 pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (538)
T TIGR03390 331 PLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFDPE 410 (538)
T ss_pred ecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcCcC
Confidence 000000 0000000000 00000 00 011357788876531 00 0 0001
Q ss_pred eeEEEEecCCEEEEEEEecC-------CCCcEEEEEcCceeEEEEe-CCcc-----------cCceEEeEEEEC------
Q 008109 212 TFKLKVKSGKTYLLRLVNSA-------LNDDLFFSIANHTLTVVEV-DAVY-----------VKPFETETLVIT------ 266 (577)
Q Consensus 212 ~~~l~v~~G~~~rlRliN~~-------~~~~~~~~i~gh~~~via~-DG~~-----------v~P~~~d~l~l~------ 266 (577)
.-.+.++.|+++++.|.|.. ....+.||||||+|+|++. +|.+ ..|...|++.+.
T Consensus 411 ~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~ 490 (538)
T TIGR03390 411 TRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKV 490 (538)
T ss_pred ceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccc
Confidence 12567888999999999975 2456789999999999985 4532 248889999983
Q ss_pred ----CCceEEEEEEeCCCCCCceEEEEeee
Q 008109 267 ----PGQTTNVLLETKPHYPSATFFMTARP 292 (577)
Q Consensus 267 ----pgeR~dv~v~~~~~~~~g~y~l~~~~ 292 (577)
++.-+.|.+.+++| |.|.++|+-
T Consensus 491 ~~~~~~~~~~ir~~~dNP---G~W~~HCHi 517 (538)
T TIGR03390 491 VPGAPAGWRAWRIRVTNP---GVWMMHCHI 517 (538)
T ss_pred cccCCCceEEEEEEcCCC---eeEEEeccc
Confidence 77888899999998 999999985
No 34
>PLN02991 oxidoreductase
Probab=98.93 E-value=1.8e-07 Score=101.38 Aligned_cols=240 Identities=10% Similarity=0.044 Sum_probs=144.6
Q ss_pred eEEEEECCCCCCCeEEEecCCEEEEEEEeCCCC-ceeeeEcceeccCCCCCCCCC----CccccccCCCCeEEEEEEECC
Q 008109 48 KTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQH-NISIHWHGIRQLRSGWADGPA----YITQCPIQTGQSYIYNFTIVG 122 (577)
Q Consensus 48 ~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~-~~~iH~HG~~~~~~~~~DGv~----~~tq~~i~PG~~~~Y~~~~~~ 122 (577)
...+++||+...+++.|++|+++|+||.|.... ...+++.|..+.-.. .||.+ -+.+..|.||||++..+++.+
T Consensus 190 ~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~~~p~~~~~l~i~~GQRydvlv~a~~ 268 (543)
T PLN02991 190 PDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVE-VEGTHTIQTPFSSLDVHVGQSYSVLITADQ 268 (543)
T ss_pred CCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEE-eCCccccceeeeEEEEcCCcEEEEEEECCC
Confidence 467899999656899999999999999999854 567777777765433 79964 245667999999999999867
Q ss_pred CceeeEEecccccccccceEeEEEeCCCCCC---CCCCC--CCCeeeEEee---cccc-----cc---H-HHH----HHH
Q 008109 123 QRGTLWWHAHISWLRSTLYGPIIILPKRGIP---YPFAK--PYKEVPIVFG---EWFK-----SD---T-EAI----INQ 181 (577)
Q Consensus 123 ~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~---~~~~~--~~~e~~l~~~---d~~~-----~~---~-~~~----~~~ 181 (577)
..|.||.-.........+.+.-|++-+.... .+.+. .+.+...-.. ++.. .. . ... ...
T Consensus 269 ~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~ 348 (543)
T PLN02991 269 PAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITR 348 (543)
T ss_pred CCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccce
Confidence 7889998754311111122233333322110 01110 0000000000 0000 00 0 000 000
Q ss_pred hh-hCCCCC--CCCCeEEEcCcCCCC----------CCCCC-----------------CceeEEEEecCCEEEEEEEecC
Q 008109 182 AL-QTGGGP--NVSDAYTFNGLPGPL----------YNCSA-----------------KDTFKLKVKSGKTYLLRLVNSA 231 (577)
Q Consensus 182 ~~-~~~~~~--~~~~~~liNG~~~~~----------~~~~~-----------------~~~~~l~v~~G~~~rlRliN~~ 231 (577)
.. ...... ...-.+.|||..+.. ++.++ ...-.+.++.|+.+.+=|-|..
T Consensus 349 ~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~ 428 (543)
T PLN02991 349 TIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWE 428 (543)
T ss_pred eEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCC
Confidence 00 000000 001246678776431 00000 0112356677888888888876
Q ss_pred CCCcEEEEEcCceeEEEEeCC-c----------ccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeee
Q 008109 232 LNDDLFFSIANHTLTVVEVDA-V----------YVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARP 292 (577)
Q Consensus 232 ~~~~~~~~i~gh~~~via~DG-~----------~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 292 (577)
.. .+.||||||.|+|++... . +..|...|++.|.++.=+-+.+++++| |-|.++|+-
T Consensus 429 ~~-~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNP---G~W~~HCHi 496 (543)
T PLN02991 429 DI-VQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNV---GMWNLRSEL 496 (543)
T ss_pred CC-CCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCC---EEeeeeeCc
Confidence 44 567999999999998532 1 235888999999999999999999999 999999996
No 35
>PLN02354 copper ion binding / oxidoreductase
Probab=98.92 E-value=1.3e-07 Score=102.99 Aligned_cols=239 Identities=14% Similarity=0.132 Sum_probs=144.9
Q ss_pred EEEEECCCCC------CCeEEEecCCEEEEEEEeCCC-CceeeeEcceeccCCCCCCCCC----CccccccCCCCeEEEE
Q 008109 49 TLVSVNGQFP------GPRIVAREGDRLLIKVVNHVQ-HNISIHWHGIRQLRSGWADGPA----YITQCPIQTGQSYIYN 117 (577)
Q Consensus 49 ~~~~~ng~~p------gP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~----~~tq~~i~PG~~~~Y~ 117 (577)
..+++||+.. -|+|.|++|++.|+||.|... ....+|..|..+.-.. .||++ .+....|.||||++..
T Consensus 190 d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydVl 268 (552)
T PLN02354 190 DGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVE-MEGSHVLQNDYDSLDVHVGQCFSVL 268 (552)
T ss_pred CeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEE-eCCcccCCcceeEEEEccCceEEEE
Confidence 5689999842 379999999999999999984 5677888888765432 89964 2345679999999999
Q ss_pred EEECCCceeeEEeccccccc--ccceEeEEEeCCCCC---CCCCCCCCCeeeE-Eeecccc-------cc---HHHH---
Q 008109 118 FTIVGQRGTLWWHAHISWLR--STLYGPIIILPKRGI---PYPFAKPYKEVPI-VFGEWFK-------SD---TEAI--- 178 (577)
Q Consensus 118 ~~~~~~~Gt~wYH~H~~~~~--~Gl~G~liV~~~~~~---~~~~~~~~~e~~l-~~~d~~~-------~~---~~~~--- 178 (577)
+++.+.+|.||......... ....|.|.-.+.... ..|....+..... ...+... .. ....
T Consensus 269 v~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 348 (552)
T PLN02354 269 VTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGK 348 (552)
T ss_pred EECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCcccccc
Confidence 99866689999988753211 122222222222110 0110000000000 0000000 00 0000
Q ss_pred H--HHh--hhCCC-CCCCCCeEEEcCcCCCC----------CCCC-C-------------------CceeEEEEecCCEE
Q 008109 179 I--NQA--LQTGG-GPNVSDAYTFNGLPGPL----------YNCS-A-------------------KDTFKLKVKSGKTY 223 (577)
Q Consensus 179 ~--~~~--~~~~~-~~~~~~~~liNG~~~~~----------~~~~-~-------------------~~~~~l~v~~G~~~ 223 (577)
. ... ..... .......+.|||..+.. ++.. + ...-.+.++.|+++
T Consensus 349 ~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~V 428 (552)
T PLN02354 349 INITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFV 428 (552)
T ss_pred ccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEE
Confidence 0 000 00000 00001245678876420 0000 0 01124677788999
Q ss_pred EEEEEecCCCCcEEEEEcCceeEEEEeCC-----------cccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeee
Q 008109 224 LLRLVNSALNDDLFFSIANHTLTVVEVDA-----------VYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARP 292 (577)
Q Consensus 224 rlRliN~~~~~~~~~~i~gh~~~via~DG-----------~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 292 (577)
.+-|.|.... .+.||||||.|+|++.-- .+..|...|++.|.++.=.-+.+++++| |-|.++|+-
T Consensus 429 eiVi~n~~~~-~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNP---GvW~~HCHi 504 (552)
T PLN02354 429 EIIFENHEKS-MQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNA---GMWNIRSEN 504 (552)
T ss_pred EEEEeCCCCC-CCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCC---eEEeeeccc
Confidence 9999997644 567999999999997532 1135888999999999999999999999 999999996
No 36
>PLN02792 oxidoreductase
Probab=98.91 E-value=2.1e-07 Score=100.94 Aligned_cols=241 Identities=12% Similarity=0.066 Sum_probs=145.3
Q ss_pred eeEEEEECCCCC--CCeEEEecCCEEEEEEEeCCC-CceeeeEcceeccCCCCCCCCC---C-ccccccCCCCeEEEEEE
Q 008109 47 TKTLVSVNGQFP--GPRIVAREGDRLLIKVVNHVQ-HNISIHWHGIRQLRSGWADGPA---Y-ITQCPIQTGQSYIYNFT 119 (577)
Q Consensus 47 ~~~~~~~ng~~p--gP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~---~-~tq~~i~PG~~~~Y~~~ 119 (577)
....+++||+-. .++|.|++|+++|+||.|... ....+++.|..+.-.. .||.+ . ++...|.||||++..++
T Consensus 178 ~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~-~DG~~v~p~~~~~l~i~~GqRydVlV~ 256 (536)
T PLN02792 178 MPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIE-VEGTHTVQSMYTSLDIHVGQTYSVLVT 256 (536)
T ss_pred CCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEE-eCCccCCCcceeEEEEccCceEEEEEE
Confidence 346789999842 478999999999999999985 4678888888765433 79853 2 34567999999999999
Q ss_pred ECCCceeeEEecccccccccceEeEEEeCCCC-CCC---C-CCC-CCCeeeEEe---eccccc-----cHH----HH--H
Q 008109 120 IVGQRGTLWWHAHISWLRSTLYGPIIILPKRG-IPY---P-FAK-PYKEVPIVF---GEWFKS-----DTE----AI--I 179 (577)
Q Consensus 120 ~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~-~~~---~-~~~-~~~e~~l~~---~d~~~~-----~~~----~~--~ 179 (577)
+.+.+|.||...........+.+.-|++-... ... + .+. .+.....-. .++... ... .. +
T Consensus 257 a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 336 (536)
T PLN02792 257 MDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKM 336 (536)
T ss_pred cCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCccccccee
Confidence 86667999998764211111222333332221 110 0 000 000000000 000000 000 00 0
Q ss_pred H--Hhh-hCCCCCC--CCCeEEEcCcCCCC----------CC---C--------CC-------CceeEEEEecCCEEEEE
Q 008109 180 N--QAL-QTGGGPN--VSDAYTFNGLPGPL----------YN---C--------SA-------KDTFKLKVKSGKTYLLR 226 (577)
Q Consensus 180 ~--~~~-~~~~~~~--~~~~~liNG~~~~~----------~~---~--------~~-------~~~~~l~v~~G~~~rlR 226 (577)
. ... ....... ..-.+.|||..+.. +. . +. ...-.+.++.|++|.+-
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiV 416 (536)
T PLN02792 337 KISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEII 416 (536)
T ss_pred ccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEE
Confidence 0 000 0000000 01245678776431 00 0 00 01234678889999999
Q ss_pred EEecCCCCcEEEEEcCceeEEEEeC-Cc----------ccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeee
Q 008109 227 LVNSALNDDLFFSIANHTLTVVEVD-AV----------YVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARP 292 (577)
Q Consensus 227 liN~~~~~~~~~~i~gh~~~via~D-G~----------~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 292 (577)
|-|.... .+.||||||.|+|++.- |. ++.|...|++.+.++.=+-+.+.+++| |-|.++|+-
T Consensus 417 iqn~~~~-~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNP---GvW~~HCh~ 489 (536)
T PLN02792 417 FQNREKI-VQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNV---GMWNLRSQF 489 (536)
T ss_pred EECCCCC-CCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCC---EEEeeeEcc
Confidence 9986544 46799999999999742 21 236888999999999999999999999 999999974
No 37
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.71 E-value=6.1e-08 Score=83.58 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=68.4
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEe
Q 008109 452 TKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLA 531 (577)
Q Consensus 452 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~a 531 (577)
.+++.++.|+.|++.+.|.. ..++.+|+||...---....|. ... -.-.|.||+....+|++
T Consensus 25 GPtI~v~~Gd~v~i~~~N~l---~~~~siH~HG~~~~~~~~~DG~--------~~~-------~~~~i~pG~~~~Y~~~~ 86 (117)
T PF07732_consen 25 GPTIRVREGDTVRITVTNNL---DEPTSIHWHGLHQPPSPWMDGV--------PGV-------TQCPIAPGESFTYEFTA 86 (117)
T ss_dssp EEEEEEETTEEEEEEEEEES---SSGBSEEEETSBSTTGGGGSGG--------TTT-------SGSSBSTTEEEEEEEEE
T ss_pred CCEEEEEcCCeeEEEEEecc---ccccccccceeeeeeeeecCCc--------ccc-------cceeEEeecceeeeEee
Confidence 46789999999999999964 4789999999753100000010 000 01248899999999999
Q ss_pred cC-ceeEEEeeechhhhhcccEEEEEEecC
Q 008109 532 DN-PGVWFMHCHLEVHTSWGLKTAWLVLDG 560 (577)
Q Consensus 532 dn-pG~w~~HCHil~H~d~GM~~~~~V~~~ 560 (577)
+. +|.|.||||...|...||...|.|++.
T Consensus 87 ~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 87 NQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 87 999999999999988999999999864
No 38
>PLN02191 L-ascorbate oxidase
Probab=98.70 E-value=1.4e-06 Score=95.60 Aligned_cols=234 Identities=12% Similarity=0.081 Sum_probs=134.5
Q ss_pred ECCCCCCCeEEEecCCEEEEEEEeCC-CCceeeeEcceeccCCCCCCCCCC----ccccccCCCCeEEEEEEECCCc-ee
Q 008109 53 VNGQFPGPRIVAREGDRLLIKVVNHV-QHNISIHWHGIRQLRSGWADGPAY----ITQCPIQTGQSYIYNFTIVGQR-GT 126 (577)
Q Consensus 53 ~ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~PG~~~~Y~~~~~~~~-Gt 126 (577)
.||+.-.++|.|++|++.|+||.|.. .....+++.|..+.-.. .||++- +....|.||||++..+++.+.+ +.
T Consensus 219 ~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~ 297 (574)
T PLN02191 219 EGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVE-ADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQN 297 (574)
T ss_pred cCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEE-cCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCC
Confidence 44443223799999999999999997 45666777777655433 899652 3456799999999999985545 58
Q ss_pred eEEeccccccc----ccceEeEEEe-CCCCCCCCC------CCC-CC----eeeE-EeeccccccHH-HHHHH-hhhCCC
Q 008109 127 LWWHAHISWLR----STLYGPIIIL-PKRGIPYPF------AKP-YK----EVPI-VFGEWFKSDTE-AIINQ-ALQTGG 187 (577)
Q Consensus 127 ~wYH~H~~~~~----~Gl~G~liV~-~~~~~~~~~------~~~-~~----e~~l-~~~d~~~~~~~-~~~~~-~~~~~~ 187 (577)
||-+.-..... .++ +++-. .......+. +.. +. ..-. .+......... ..... ......
T Consensus 298 y~ira~~~~~~~~~~~~~--ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 375 (574)
T PLN02191 298 YYISVGVRGRKPNTTQAL--TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQ 375 (574)
T ss_pred EEEEEEccccCCCCCCce--EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEeccc
Confidence 99886443311 232 33333 211110010 000 00 0000 00000000000 00000 000000
Q ss_pred C-CCCCCeEEEcCcCCCCCC------------------------------CCC-------CceeEEEEecCCEEEEEEEe
Q 008109 188 G-PNVSDAYTFNGLPGPLYN------------------------------CSA-------KDTFKLKVKSGKTYLLRLVN 229 (577)
Q Consensus 188 ~-~~~~~~~liNG~~~~~~~------------------------------~~~-------~~~~~l~v~~G~~~rlRliN 229 (577)
. ......+.+||.++..-. |.. ...-.+.++.|+++.+=|.|
T Consensus 376 ~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n 455 (574)
T PLN02191 376 NLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQN 455 (574)
T ss_pred ceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEEC
Confidence 0 000124566776431000 000 01124567779999999998
Q ss_pred cC-----CCCcEEEEEcCceeEEEEeCCc------------ccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeee
Q 008109 230 SA-----LNDDLFFSIANHTLTVVEVDAV------------YVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARP 292 (577)
Q Consensus 230 ~~-----~~~~~~~~i~gh~~~via~DG~------------~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 292 (577)
.. ....+.||+|||+|+|++..-+ +..|...|++.+.++.=+-+.+++++| |-|.++|+-
T Consensus 456 ~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNP---G~Wl~HCHi 532 (574)
T PLN02191 456 ANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNP---GVWFFHCHI 532 (574)
T ss_pred CCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCC---EEEEEecCc
Confidence 75 2446789999999999975432 125778999999999999999999999 999999995
No 39
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.70 E-value=1.7e-07 Score=83.71 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=71.4
Q ss_pred ceeEEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCccc-----------CceEEeEEEECCCceEEEEEEeCC
Q 008109 211 DTFKLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYV-----------KPFETETLVITPGQTTNVLLETKP 279 (577)
Q Consensus 211 ~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v-----------~P~~~d~l~l~pgeR~dv~v~~~~ 279 (577)
....+.++.|++++|+|.|.+.. .+.||+||+.|+|++.++... .|..+|++.|.+|+++.+.++++.
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~ 110 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN 110 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS
T ss_pred CcceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeec
Confidence 44789999999999999998855 668999999999999999873 578899999999999999999997
Q ss_pred CCCCceEEEEeeec
Q 008109 280 HYPSATFFMTARPY 293 (577)
Q Consensus 280 ~~~~g~y~l~~~~~ 293 (577)
+ |.|.++|+..
T Consensus 111 ~---G~w~~HCHi~ 121 (138)
T PF07731_consen 111 P---GPWLFHCHIL 121 (138)
T ss_dssp T---EEEEEEESSH
T ss_pred c---eEEEEEEchH
Confidence 7 9999999964
No 40
>PRK02710 plastocyanin; Provisional
Probab=98.65 E-value=3.4e-07 Score=79.23 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=54.0
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEeccccccccc
Q 008109 60 PRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHISWLRST 139 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~G 139 (577)
+.|++++||+| +++|....++++.+.|.. +. ..+...+.||++++|.|+. +|+|-|+|-.| ..+|
T Consensus 47 ~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~--------~~-~~~~~~~~pg~t~~~tF~~---~G~y~y~C~~H-~~~g 111 (119)
T PRK02710 47 STLTIKAGDTV--KWVNNKLAPHNAVFDGAK--------EL-SHKDLAFAPGESWEETFSE---AGTYTYYCEPH-RGAG 111 (119)
T ss_pred CEEEEcCCCEE--EEEECCCCCceEEecCCc--------cc-cccccccCCCCEEEEEecC---CEEEEEEcCCC-ccCC
Confidence 78999999985 567887788888765421 10 0111347899999999973 89999999832 2379
Q ss_pred ceEeEEEe
Q 008109 140 LYGPIIIL 147 (577)
Q Consensus 140 l~G~liV~ 147 (577)
|.|.|+|+
T Consensus 112 M~G~I~V~ 119 (119)
T PRK02710 112 MVGKITVE 119 (119)
T ss_pred cEEEEEEC
Confidence 99999984
No 41
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.60 E-value=1.6e-07 Score=79.52 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=46.4
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEeccccccccc
Q 008109 60 PRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHISWLRST 139 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~G 139 (577)
..|++++|+.|+|+++|.....+.+...++... ..|.||++.+++|+. .++|+|=|+|-.+. .
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~-------------~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~--~- 97 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS-------------KVLPPGETATVTFTP-LKPGEYEFYCTMHP--N- 97 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE-------------EEE-TT-EEEEEEEE--S-EEEEEB-SSS---T-
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCceE-------------EEECCCCEEEEEEcC-CCCEEEEEEcCCCC--c-
Confidence 589999999999999999888766666653322 468999999999985 89999999999766 3
Q ss_pred ceEeEEE
Q 008109 140 LYGPIII 146 (577)
Q Consensus 140 l~G~liV 146 (577)
|.|-|+|
T Consensus 98 m~G~liV 104 (104)
T PF13473_consen 98 MKGTLIV 104 (104)
T ss_dssp TB-----
T ss_pred ceecccC
Confidence 7777775
No 42
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.45 E-value=1.5e-05 Score=87.27 Aligned_cols=228 Identities=16% Similarity=0.138 Sum_probs=132.6
Q ss_pred CeEEEecCCEEEEEEEeCC-CCceeeeEcceeccCCCCCCCCCC----ccccccCCCCeEEEEEEECCCce-eeEEeccc
Q 008109 60 PRIVAREGDRLLIKVVNHV-QHNISIHWHGIRQLRSGWADGPAY----ITQCPIQTGQSYIYNFTIVGQRG-TLWWHAHI 133 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~PG~~~~Y~~~~~~~~G-t~wYH~H~ 133 (577)
++|.|++|++.|+||.|.. .....++.-|..+.-.. .||.+- ++...|.||||++.-+++.+.+| .||.-...
T Consensus 217 ~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa-~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~ 295 (596)
T PLN00044 217 ERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVE-AEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASA 295 (596)
T ss_pred ceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEE-eCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEec
Confidence 5899999999999999998 45666777776654432 788542 34567999999999999854455 89986532
Q ss_pred c--c-c-cccceEeEEEeCCCCCC-----CCC-CCCCCeeeEEe---eccc--cc------cH---HHH----HHHhh-h
Q 008109 134 S--W-L-RSTLYGPIIILPKRGIP-----YPF-AKPYKEVPIVF---GEWF--KS------DT---EAI----INQAL-Q 184 (577)
Q Consensus 134 ~--~-~-~~Gl~G~liV~~~~~~~-----~~~-~~~~~e~~l~~---~d~~--~~------~~---~~~----~~~~~-~ 184 (577)
. . . ..-+.|.-|++-..... .|. +....+..... .... .. .. ... ..... .
T Consensus 296 ~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 375 (596)
T PLN00044 296 RFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLL 375 (596)
T ss_pred ccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeee
Confidence 1 1 0 11122333344322110 111 00000100000 0000 00 00 000 00000 0
Q ss_pred CCCCC-CC--CCeEEEcCcCCCC----------CCCCC-------C---------ceeEEEEecCCEEEEEEEecCCCCc
Q 008109 185 TGGGP-NV--SDAYTFNGLPGPL----------YNCSA-------K---------DTFKLKVKSGKTYLLRLVNSALNDD 235 (577)
Q Consensus 185 ~~~~~-~~--~~~~liNG~~~~~----------~~~~~-------~---------~~~~l~v~~G~~~rlRliN~~~~~~ 235 (577)
.+... .+ .-.+.|||.++.. ++.++ . ...+..++.+++|.+-|-|.. ...
T Consensus 376 ~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~-~~~ 454 (596)
T PLN00044 376 QSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNA-TNV 454 (596)
T ss_pred ccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCCC-CCC
Confidence 00000 00 0245677776431 11111 0 123457777899999999865 346
Q ss_pred EEEEEcCceeEEEEeCC-----------cccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeee
Q 008109 236 LFFSIANHTLTVVEVDA-----------VYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARP 292 (577)
Q Consensus 236 ~~~~i~gh~~~via~DG-----------~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 292 (577)
+.||||||.|.|++... +++.|...|++.+.+|.=.-|.+++++| |-|.|+|+-
T Consensus 455 HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNP---G~W~lHCH~ 519 (596)
T PLN00044 455 QSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNA---GIWNLRVEN 519 (596)
T ss_pred CCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCCC---EEehhhccC
Confidence 67999999999997644 2235888999999999999999999999 999999993
No 43
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.32 E-value=2.9e-06 Score=70.91 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=55.3
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCc--cccccCCCCeEEEEEEECCCceeeEEeccccccc
Q 008109 60 PRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYI--TQCPIQTGQSYIYNFTIVGQRGTLWWHAHISWLR 137 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~--tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~ 137 (577)
..|++++||+| +++|....++++.++........ .+..+.. +...+.||+++++.|.. +|+|.|+|. ....
T Consensus 17 ~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~-~H~~ 89 (99)
T TIGR02656 17 AKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGV-KELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE-PHRG 89 (99)
T ss_pred CEEEECCCCEE--EEEECCCCCceEEECCCCCccch-hhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC-Cccc
Confidence 68999999986 56688777787776643222110 0111111 22357899999998863 999999998 2233
Q ss_pred ccceEeEEEe
Q 008109 138 STLYGPIIIL 147 (577)
Q Consensus 138 ~Gl~G~liV~ 147 (577)
+||.|.|+|+
T Consensus 90 aGM~G~I~V~ 99 (99)
T TIGR02656 90 AGMVGKITVE 99 (99)
T ss_pred cCCEEEEEEC
Confidence 7999999985
No 44
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.15 E-value=0.00025 Score=76.99 Aligned_cols=241 Identities=15% Similarity=0.134 Sum_probs=138.0
Q ss_pred eEEEEECCCCCC-----CeEEEecCCEEEEEEEeCC-CCceeeeEcceeccCCCCCCC---CCCc-cccccCCCCeEEEE
Q 008109 48 KTLVSVNGQFPG-----PRIVAREGDRLLIKVVNHV-QHNISIHWHGIRQLRSGWADG---PAYI-TQCPIQTGQSYIYN 117 (577)
Q Consensus 48 ~~~~~~ng~~pg-----P~i~v~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DG---v~~~-tq~~i~PG~~~~Y~ 117 (577)
-...++||+-.. +++.+++|++.++|+.|.. .....+..-|..+.... .|| .|.. +-..|.|||++++-
T Consensus 192 ~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe-~Dg~y~~p~~~~~l~i~~GQ~~~vL 270 (563)
T KOG1263|consen 192 SDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVE-VDGAYTKPFTTDSLDIHPGQTYSVL 270 (563)
T ss_pred CCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEE-ecceEEeeeeeceEEEcCCcEEEEE
Confidence 467899998521 6899999999999999996 44455555555544332 677 3332 23568999999999
Q ss_pred EEECCCceeeEEecccccccc----cceEeEEEeCCCCC-----CCC----CCC-CCCeeeEEeecc--------ccccH
Q 008109 118 FTIVGQRGTLWWHAHISWLRS----TLYGPIIILPKRGI-----PYP----FAK-PYKEVPIVFGEW--------FKSDT 175 (577)
Q Consensus 118 ~~~~~~~Gt~wYH~H~~~~~~----Gl~G~liV~~~~~~-----~~~----~~~-~~~e~~l~~~d~--------~~~~~ 175 (577)
.++.+.++.||+-...-.+.. -+.+..+++...+. ..+ .+. .+....+-+..- .....
T Consensus 271 vtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~ 350 (563)
T KOG1263|consen 271 LTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPV 350 (563)
T ss_pred EeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccccccccCcccC
Confidence 999788889998876633321 23333333332210 000 000 000000000000 00000
Q ss_pred H-HHHHHhh---------hCCCCC-CCCCeEEEcCcCC---------------------CCCCCCC----------Ccee
Q 008109 176 E-AIINQAL---------QTGGGP-NVSDAYTFNGLPG---------------------PLYNCSA----------KDTF 213 (577)
Q Consensus 176 ~-~~~~~~~---------~~~~~~-~~~~~~liNG~~~---------------------~~~~~~~----------~~~~ 213 (577)
. ....... ...... .......||+... ..+.|.. ...-
T Consensus 351 P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~ 430 (563)
T KOG1263|consen 351 PQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTS 430 (563)
T ss_pred CCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCccccccce
Confidence 0 0000000 000000 0011233333311 0011111 1223
Q ss_pred EEEEecCCEEEEEEEecCCCC--cEEEEEcCceeEEEEeCCcc-------------cCceEEeEEEECCCceEEEEEEeC
Q 008109 214 KLKVKSGKTYLLRLVNSALND--DLFFSIANHTLTVVEVDAVY-------------VKPFETETLVITPGQTTNVLLETK 278 (577)
Q Consensus 214 ~l~v~~G~~~rlRliN~~~~~--~~~~~i~gh~~~via~DG~~-------------v~P~~~d~l~l~pgeR~dv~v~~~ 278 (577)
.+.++-+..+-+=+-|.+... .+.+|||||.|+|++.+.+. ..|...|++.|.||.=.-|.|.++
T Consensus 431 v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~ad 510 (563)
T KOG1263|consen 431 VMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVAD 510 (563)
T ss_pred EEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcC
Confidence 467888888888888887443 35679999999999983322 136678999999999999999999
Q ss_pred CCCCCceEEEEeee
Q 008109 279 PHYPSATFFMTARP 292 (577)
Q Consensus 279 ~~~~~g~y~l~~~~ 292 (577)
+| |-|.|||+-
T Consensus 511 NP---G~W~~HCHi 521 (563)
T KOG1263|consen 511 NP---GVWLMHCHI 521 (563)
T ss_pred CC---cEEEEEEec
Confidence 99 999999985
No 45
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.15 E-value=8.5e-06 Score=68.17 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=53.2
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCC-CCCCccccccCCCCeEEEEEEECCCceeeEEecccccccc
Q 008109 60 PRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWAD-GPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHISWLRS 138 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~D-Gv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~ 138 (577)
..|.+++||+| ++.|....++++.+=--........+ ..+.-....+.||+++++.|+ .+|+|.|+|-. ...+
T Consensus 17 ~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~P-H~~~ 90 (99)
T PF00127_consen 17 SEITVKAGDTV--TFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCTP-HYEA 90 (99)
T ss_dssp SEEEEETTEEE--EEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEETT-TGGT
T ss_pred CEEEECCCCEE--EEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcCC-Cccc
Confidence 79999999985 56676666666655321100000000 000002235789999999997 69999999984 4448
Q ss_pred cceEeEEEe
Q 008109 139 TLYGPIIIL 147 (577)
Q Consensus 139 Gl~G~liV~ 147 (577)
||.|.|+|+
T Consensus 91 GM~G~i~V~ 99 (99)
T PF00127_consen 91 GMVGTIIVE 99 (99)
T ss_dssp TSEEEEEEE
T ss_pred CCEEEEEEC
Confidence 999999995
No 46
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=98.14 E-value=1.5e-05 Score=64.34 Aligned_cols=73 Identities=18% Similarity=0.280 Sum_probs=52.8
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEeccccccccc
Q 008109 60 PRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHISWLRST 139 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~G 139 (577)
+.|++++||+| +++|....++++++.........+. + ..+.||+++++.| .++|+|-|||-.|. .
T Consensus 11 ~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~~~~~~~-~------~~~~~g~~~~~tf---~~~G~y~y~C~~Hp---~ 75 (83)
T TIGR02657 11 PELHVKVGDTV--TWINREAMPHNVHFVAGVLGEAALK-G------PMMKKEQAYSLTF---TEAGTYDYHCTPHP---F 75 (83)
T ss_pred CEEEECCCCEE--EEEECCCCCccEEecCCCCcccccc-c------cccCCCCEEEEEC---CCCEEEEEEcCCCC---C
Confidence 78999999996 5689888888888754321111111 1 2357888888877 46999999998876 5
Q ss_pred ceEeEEEe
Q 008109 140 LYGPIIIL 147 (577)
Q Consensus 140 l~G~liV~ 147 (577)
|.|.++|+
T Consensus 76 M~G~v~V~ 83 (83)
T TIGR02657 76 MRGKVVVE 83 (83)
T ss_pred CeEEEEEC
Confidence 99999885
No 47
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.02 E-value=2.2e-05 Score=70.44 Aligned_cols=93 Identities=17% Similarity=0.253 Sum_probs=59.6
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCC---C--cEEE
Q 008109 452 TKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPS---G--GWVA 526 (577)
Q Consensus 452 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~---~--~~v~ 526 (577)
.+.+.++.|+.|++++.|... ...|.|-||.+.-..-. .+..+. .+..-..-.+|+ | ++..
T Consensus 51 ~P~I~v~~Gd~V~v~v~N~~~--~~~H~~~I~~~g~~~~~------~p~mdG------~~~~~~~~i~p~~~~g~~~~~~ 116 (148)
T TIGR03095 51 NPTIVIPEGVTVHFTVINTDT--DSGHNFDISKRGPPYPY------MPGMDG------LGFVAGTGFLPPPKSGKFGYTD 116 (148)
T ss_pred CCEEEEcCCCEEEEEEEeCCC--CccccEEeecCCCcccc------ccccCC------CCccccCcccCCCCCCccceeE
Confidence 356789999999999999742 35677777643210000 000000 011111112222 2 2468
Q ss_pred EEEEecCceeEEEeeechhhhhcccEEEEEEe
Q 008109 527 IRFLADNPGVWFMHCHLEVHTSWGLKTAWLVL 558 (577)
Q Consensus 527 irf~adnpG~w~~HCHil~H~d~GM~~~~~V~ 558 (577)
+.|+++.+|.+.||||+..|...||...|.|+
T Consensus 117 ~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 117 FTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 88999999999999999999999999999873
No 48
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.02 E-value=2.7e-05 Score=84.03 Aligned_cols=99 Identities=19% Similarity=0.262 Sum_probs=70.9
Q ss_pred EeccCcee--eEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEE
Q 008109 40 NVTRLCHT--KTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYN 117 (577)
Q Consensus 40 ~~~~~g~~--~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~ 117 (577)
.+..+|.+ ..+.+..-.+--+.|+|++||.|+++|+|.....-.+ ||+.++.. |+ +.-+.||++.+..
T Consensus 533 ~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI----~~dv~PG~t~svt 602 (635)
T PRK02888 533 KVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV----NMEVAPQATASVT 602 (635)
T ss_pred ceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Cc----cEEEcCCceEEEE
Confidence 34556633 3455666666557899999999999999964322222 66665432 11 1357899999999
Q ss_pred EEECCCceeeEEecccc--cccccceEeEEEeCC
Q 008109 118 FTIVGQRGTLWWHAHIS--WLRSTLYGPIIILPK 149 (577)
Q Consensus 118 ~~~~~~~Gt~wYH~H~~--~~~~Gl~G~liV~~~ 149 (577)
|++ +++|.|||||..- ..-.+|.|.++|+++
T Consensus 603 F~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 603 FTA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred EEc-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 996 9999999999862 222799999999874
No 49
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.01 E-value=2.7e-05 Score=71.27 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=77.2
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEe
Q 008109 452 TKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLA 531 (577)
Q Consensus 452 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~a 531 (577)
...+.++.|++++|+|.|.+. ...+.|++.||+|+|++.... ...|...|++.|.+|+.+.|.+++
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~--~~~~~~~i~gh~~~Via~DG~------------~v~p~~~~~l~l~~G~R~dvlv~~ 124 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGA--STSFNFSIDGHPMTVIAADGV------------PVEPYKVDTLVLAPGQRYDVLVTA 124 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESS--S-BEEEEETTBCEEEEEETTE------------EEEEEEESBEEE-TTEEEEEEEEE
T ss_pred cceEEEcCCcEEEEEEEeccC--CeeEEEEeeccceeEeeeccc------------cccccccceEEeeCCeEEEEEEEe
Confidence 467899999999999999763 468999999999999998422 223778899999999999999999
Q ss_pred cC-ceeEEEee----echhhhhcccEEEEEEec
Q 008109 532 DN-PGVWFMHC----HLEVHTSWGLKTAWLVLD 559 (577)
Q Consensus 532 dn-pG~w~~HC----Hil~H~d~GM~~~~~V~~ 559 (577)
+. +|.|.++| +...+...|+...+++-.
T Consensus 125 ~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 125 DQPPGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp CSCSSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred CCCCCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 87 99999999 667778888888776643
No 50
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=98.00 E-value=0.00024 Score=63.81 Aligned_cols=100 Identities=16% Similarity=0.122 Sum_probs=74.4
Q ss_pred EEEEECCCCCC-CeEEEecCCEEEEEEEeCCCCceeeeEcceeccC------CCCCCCC----CCccc-----cccCCCC
Q 008109 49 TLVSVNGQFPG-PRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLR------SGWADGP----AYITQ-----CPIQTGQ 112 (577)
Q Consensus 49 ~~~~~ng~~pg-P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~------~~~~DGv----~~~tq-----~~i~PG~ 112 (577)
+.+.|||+..| ++|.+..|-+|.|+|+|....++++-. +.... ....||. +|.++ ..|.+|+
T Consensus 73 ~~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~i--v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gq 150 (195)
T TIGR03094 73 YPFNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKL--LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGH 150 (195)
T ss_pred ccccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEE--ecCCCCCCCccccccCceeEeecccccCccccccccccc
Confidence 34778999988 899999999999999999987776654 22111 1224662 23331 3567888
Q ss_pred eEEEEEEECCCceeeEEeccccccc-ccceEeEEEeCCCC
Q 008109 113 SYIYNFTIVGQRGTLWWHAHISWLR-STLYGPIIILPKRG 151 (577)
Q Consensus 113 ~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~ 151 (577)
+..-.|. +-++|+|||-|-..++. +||+|-+||...-.
T Consensus 151 s~sg~~~-~~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 151 SRSGWWN-DTSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred eeEEEec-cCCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 8666666 47999999999998776 99999999987654
No 51
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.87 E-value=0.00011 Score=67.66 Aligned_cols=102 Identities=20% Similarity=0.144 Sum_probs=74.5
Q ss_pred EEEEECCCCCC-CeEEEecCCEEEEEEEeCCCCceeeeEc--ceecc--CCCCCCCCC----C-----ccccccCCCCeE
Q 008109 49 TLVSVNGQFPG-PRIVAREGDRLLIKVVNHVQHNISIHWH--GIRQL--RSGWADGPA----Y-----ITQCPIQTGQSY 114 (577)
Q Consensus 49 ~~~~~ng~~pg-P~i~v~~Gd~v~v~l~N~l~~~~~iH~H--G~~~~--~~~~~DGv~----~-----~tq~~i~PG~~~ 114 (577)
..+.|||..-| ++|.+..|-+|.|+++|....++++-.= +-.++ ..-..||.. | .+-..|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 36788998887 8999999999999999997655553322 11111 122355511 1 123478899999
Q ss_pred EEEEEECCCceeeEEeccccccc-ccceEeEEEeCCCC
Q 008109 115 IYNFTIVGQRGTLWWHAHISWLR-STLYGPIIILPKRG 151 (577)
Q Consensus 115 ~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~ 151 (577)
.-.|.. -++|.|||-|-..++. +||++-|+|...-.
T Consensus 154 ~~~~~~-l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 154 SGVYND-LPAGYYWLVCGIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred eEEEcc-CCCceEEEEccCCChhhcCCEEEEEEecCcc
Confidence 877753 6899999999998887 89999999998754
No 52
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.53 E-value=0.0004 Score=58.01 Aligned_cols=83 Identities=16% Similarity=0.251 Sum_probs=57.8
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEec
Q 008109 453 KLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLAD 532 (577)
Q Consensus 453 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~ad 532 (577)
..+.++.|++|+|+ |.+ ...|-+.++...+.. +.. ........+++.+.||+...+.|..
T Consensus 17 ~~i~v~~G~~V~~~--N~~---~~~H~~~~~~~~~~~-----~~~---------~~~~~~~~~~~~~~pG~t~~~tF~~- 76 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNK---GGPHNVVFDEDAVPA-----GVK---------ELAKSLSHKDLLNSPGESYEVTFST- 76 (99)
T ss_pred CEEEECCCCEEEEE--ECC---CCCceEEECCCCCcc-----chh---------hhcccccccccccCCCCEEEEEeCC-
Confidence 35788999999987 432 367887765432211 000 0011123467788999998887665
Q ss_pred CceeEEEeeechhhhhcccEEEEEEe
Q 008109 533 NPGVWFMHCHLEVHTSWGLKTAWLVL 558 (577)
Q Consensus 533 npG~w~~HCHil~H~d~GM~~~~~V~ 558 (577)
+|.|.|||- -|...||...+.|+
T Consensus 77 -~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 -PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred -CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999998 89999999999874
No 53
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.45 E-value=0.0008 Score=57.54 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=49.0
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeeeE-cceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEecccccccc
Q 008109 60 PRIVAREGDRLLIKVVNHVQHNISIHW-HGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHISWLRS 138 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l~~~~~iH~-HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~ 138 (577)
..|.+++||+|+....|. ++++.+ .+. ..+|... ..-.+|+++++.| +.+|+|-|+|-.| ..+
T Consensus 15 ~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~------~p~g~~~---~~s~~g~~~~~tF---~~~G~Y~Y~C~pH-~~~ 78 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK---GHNVETIKGM------IPEGAEA---FKSKINEEYTVTV---TEEGVYGVKCTPH-YGM 78 (116)
T ss_pred CEEEECCCCEEEEEECCC---CeeEEEccCC------CcCCccc---ccCCCCCEEEEEe---CCCEEEEEEcCCC-ccC
Confidence 689999999977666654 455443 111 1122211 1124577666666 4699999999832 348
Q ss_pred cceEeEEEeCCC
Q 008109 139 TLYGPIIILPKR 150 (577)
Q Consensus 139 Gl~G~liV~~~~ 150 (577)
||.|.|+|.++.
T Consensus 79 GM~G~V~Vg~~~ 90 (116)
T TIGR02375 79 GMVALIQVGDPP 90 (116)
T ss_pred CCEEEEEECCCC
Confidence 999999999864
No 54
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.44 E-value=0.00078 Score=58.18 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=54.8
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEeccccccccc
Q 008109 60 PRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHISWLRST 139 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~G 139 (577)
-.|++++||+ |+++|.....++++.-+... .+|.- ...-.+|+++++.|+ .+|+|-|+|-.|. .+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~~-----~~g~~---~~~~~~~~s~~~Tfe---~~G~Y~Y~C~PH~-~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGMD-----PEGSG---TLKAGINESFTHTFE---TPGEYTYYCTPHP-GMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCCC-----ccccc---ccccCCCcceEEEec---ccceEEEEeccCC-CCC
Confidence 4899999999 77889988888887665541 12221 133455688888886 4999999997642 379
Q ss_pred ceEeEEEeC
Q 008109 140 LYGPIIILP 148 (577)
Q Consensus 140 l~G~liV~~ 148 (577)
|.|.|+|.+
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 55
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.24 E-value=0.0025 Score=54.43 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=49.8
Q ss_pred CeEEEecCCEEEEEEEeCC-CCceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEecccccccc
Q 008109 60 PRIVAREGDRLLIKVVNHV-QHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHISWLRS 138 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~ 138 (577)
..|.+++||+|+ ++|+. ..++++..- .... .| .......||++|+|.|. ++|+|-|+|-.| ..+
T Consensus 42 ~~ltV~~GdTVt--w~~~~d~~~HnV~s~----~~~~-f~----s~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~pH-~~~ 106 (115)
T TIGR03102 42 PAIRVDPGTTVV--WEWTGEGGGHNVVSD----GDGD-LD----ESERVSEEGTTYEHTFE---EPGIYLYVCVPH-EAL 106 (115)
T ss_pred CEEEECCCCEEE--EEECCCCCCEEEEEC----CCCC-cc----ccccccCCCCEEEEEec---CCcEEEEEccCC-CCC
Confidence 689999999955 66543 466666531 1111 11 01123578999999995 599999999855 236
Q ss_pred cceEeEEEe
Q 008109 139 TLYGPIIIL 147 (577)
Q Consensus 139 Gl~G~liV~ 147 (577)
||.|.|+|+
T Consensus 107 gM~G~I~V~ 115 (115)
T TIGR03102 107 GMKGAVVVE 115 (115)
T ss_pred CCEEEEEEC
Confidence 999999984
No 56
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.11 E-value=0.0023 Score=55.70 Aligned_cols=59 Identities=22% Similarity=0.427 Sum_probs=48.0
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEecC
Q 008109 454 LVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLADN 533 (577)
Q Consensus 454 ~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adn 533 (577)
.+.++.|+.|+|++.|.+ +..|.+-++++.+ ...|++|+...|+|.++-
T Consensus 62 ~I~VkaGD~Vtl~vtN~d---~~~H~f~i~~~gi----------------------------s~~I~pGet~TitF~adK 110 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKS---PISEGFSIDAYGI----------------------------SEVIKAGETKTISFKADK 110 (135)
T ss_pred EEEECCCCEEEEEEEeCC---CCccceEECCCCc----------------------------ceEECCCCeEEEEEECCC
Confidence 578999999999999964 3577777766421 235889999999999999
Q ss_pred ceeEEEeeec
Q 008109 534 PGVWFMHCHL 543 (577)
Q Consensus 534 pG~w~~HCHi 543 (577)
||.|-|||-.
T Consensus 111 pG~Y~y~C~~ 120 (135)
T TIGR03096 111 AGAFTIWCQL 120 (135)
T ss_pred CEEEEEeCCC
Confidence 9999999964
No 57
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.97 E-value=0.0044 Score=51.69 Aligned_cols=83 Identities=17% Similarity=0.300 Sum_probs=55.2
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEec
Q 008109 453 KLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLAD 532 (577)
Q Consensus 453 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~ad 532 (577)
..+.++.|++|.|+..+ ...|.+.+=- .+ .......... +..-.+..+.+|+...+.|.
T Consensus 17 ~~i~V~~G~tV~~~n~~-----~~~Hnv~~~~-------~~---~~~~~~~~~~----~~~~~~~~~~~G~~~~~tF~-- 75 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNND-----SMPHNVVFVA-------DG---MPAGADSDYV----PPGDSSPLLAPGETYSVTFT-- 75 (99)
T ss_dssp SEEEEETTEEEEEEEES-----SSSBEEEEET-------TS---SHTTGGHCHH----STTCEEEEBSTTEEEEEEEE--
T ss_pred CEEEECCCCEEEEEECC-----CCCceEEEec-------cc---cccccccccc----CccccceecCCCCEEEEEeC--
Confidence 45789999999998763 2566665422 11 0000000000 01115677889998888777
Q ss_pred CceeEEEeeechhhhhcccEEEEEEe
Q 008109 533 NPGVWFMHCHLEVHTSWGLKTAWLVL 558 (577)
Q Consensus 533 npG~w~~HCHil~H~d~GM~~~~~V~ 558 (577)
.+|.|.|+|- . |...||-..|.|+
T Consensus 76 ~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 76 KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 8999999999 5 9999999999985
No 58
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.57 E-value=0.01 Score=64.63 Aligned_cols=78 Identities=19% Similarity=0.347 Sum_probs=60.1
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEecC
Q 008109 454 LVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLADN 533 (577)
Q Consensus 454 ~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adn 533 (577)
-+.++.|+.|.+++.|.....+..|-|-+-++.. -+.+.||....+.|+++.
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------------------~~dv~PG~t~svtF~adk 607 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------------------NMEVAPQATASVTFTADK 607 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCc----------------------------cEEEcCCceEEEEEEcCC
Confidence 4789999999999999643335678877755432 124679999999999999
Q ss_pred ceeEEEeeechhhh-hcccEEEEEEec
Q 008109 534 PGVWFMHCHLEVHT-SWGLKTAWLVLD 559 (577)
Q Consensus 534 pG~w~~HCHil~H~-d~GM~~~~~V~~ 559 (577)
||.|.+||...-|. +.+|...+.|++
T Consensus 608 PGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 608 PGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CEEEEEECCcccccCcccceEEEEEEe
Confidence 99999999874432 248999998875
No 59
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=96.29 E-value=0.059 Score=47.71 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=64.4
Q ss_pred CCCCCeEEEecCCEEEEEEEeCCC-----------CceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCc
Q 008109 56 QFPGPRIVAREGDRLLIKVVNHVQ-----------HNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQR 124 (577)
Q Consensus 56 ~~pgP~i~v~~Gd~v~v~l~N~l~-----------~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~ 124 (577)
.+++-.+.++.|++++..+.|.-. .....-.|...... +++- ......+.||++-+..|.. ..+
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~D---me~d-~~~~v~L~PG~s~elvv~f-t~~ 133 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADD---MEHD-DPNTVTLAPGKSGELVVVF-TGA 133 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCc---cccC-CcceeEeCCCCcEEEEEEe-cCC
Confidence 356678999999999999999853 11222223333321 2221 1123579999999999997 889
Q ss_pred eeeEEeccccccc-ccceEeEEEeC
Q 008109 125 GTLWWHAHISWLR-STLYGPIIILP 148 (577)
Q Consensus 125 Gt~wYH~H~~~~~-~Gl~G~liV~~ 148 (577)
|.|-+-|-..+++ +||.|-|.|.+
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeCC
Confidence 9999999999998 89999999864
No 60
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.13 E-value=0.027 Score=47.39 Aligned_cols=61 Identities=15% Similarity=0.305 Sum_probs=40.7
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEecC
Q 008109 454 LVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLADN 533 (577)
Q Consensus 454 ~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adn 533 (577)
.+.++.|+.+.+++.|.+. ..|-|.+.+.. . ...+++|+...+.|.++.
T Consensus 36 ~i~v~~G~~v~l~~~N~~~---~~h~~~i~~~~---------------------------~-~~~l~~g~~~~~~f~~~~ 84 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDS---RPHEFVIPDLG---------------------------I-SKVLPPGETATVTFTPLK 84 (104)
T ss_dssp EEEEETTCEEEEEEEE-SS---S-EEEEEGGGT---------------------------E-EEEE-TT-EEEEEEEE-S
T ss_pred EEEEcCCCeEEEEEEECCC---CcEEEEECCCc---------------------------e-EEEECCCCEEEEEEcCCC
Confidence 5789999999999999753 44555444411 2 257899999999999999
Q ss_pred ceeEEEeeechh
Q 008109 534 PGVWFMHCHLEV 545 (577)
Q Consensus 534 pG~w~~HCHil~ 545 (577)
||.|-|+|-+-.
T Consensus 85 ~G~y~~~C~~~~ 96 (104)
T PF13473_consen 85 PGEYEFYCTMHP 96 (104)
T ss_dssp -EEEEEB-SSS-
T ss_pred CEEEEEEcCCCC
Confidence 999999999444
No 61
>PRK02710 plastocyanin; Provisional
Probab=95.88 E-value=0.041 Score=47.55 Aligned_cols=72 Identities=14% Similarity=0.229 Sum_probs=50.7
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEecC
Q 008109 454 LVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLADN 533 (577)
Q Consensus 454 ~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adn 533 (577)
.+.++.|++|+|+ |.+ ...|.+.+.+... +. .+ ...+.+|+...+.|..
T Consensus 48 ~i~v~~Gd~V~~~--N~~---~~~H~v~~~~~~~---------~~--------------~~-~~~~~pg~t~~~tF~~-- 96 (119)
T PRK02710 48 TLTIKAGDTVKWV--NNK---LAPHNAVFDGAKE---------LS--------------HK-DLAFAPGESWEETFSE-- 96 (119)
T ss_pred EEEEcCCCEEEEE--ECC---CCCceEEecCCcc---------cc--------------cc-ccccCCCCEEEEEecC--
Confidence 4688999999986 432 3578776543210 00 01 1346788887766665
Q ss_pred ceeEEEeeechhhhhcccEEEEEEe
Q 008109 534 PGVWFMHCHLEVHTSWGLKTAWLVL 558 (577)
Q Consensus 534 pG~w~~HCHil~H~d~GM~~~~~V~ 558 (577)
||.|.|+|= -|...||-..+.|+
T Consensus 97 ~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999997 89999999999884
No 62
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=94.96 E-value=0.21 Score=43.15 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=50.5
Q ss_pred CCeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEeccc-cccc
Q 008109 59 GPRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHI-SWLR 137 (577)
Q Consensus 59 gP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~-~~~~ 137 (577)
.+.|.+..|+.|++++++.. .- ||..++.. |+ +.-+-||+.....|+. +++|+|++.|.. -|..
T Consensus 45 ~~~l~lp~g~~v~~~ltS~D-Vi-----Hsf~ip~~----~~----k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~g 109 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSED-VI-----HSFWIPEL----GI----KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAG 109 (120)
T ss_dssp SSEEEEETTSEEEEEEEESS-S------EEEEETTC----TE----EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTT
T ss_pred cceecccccceEeEEEEcCC-cc-----cccccccc----Cc----ccccccccceeeeeee-ccCCcEEEcCccccCcC
Confidence 37899999999999999963 33 34443321 11 2346799999999997 999999999985 2222
Q ss_pred -ccceEeEEE
Q 008109 138 -STLYGPIII 146 (577)
Q Consensus 138 -~Gl~G~liV 146 (577)
+.|.|-++|
T Consensus 110 H~~M~~~v~V 119 (120)
T PF00116_consen 110 HSFMPGKVIV 119 (120)
T ss_dssp GGG-EEEEEE
T ss_pred cCCCeEEEEE
Confidence 567777665
No 63
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=94.90 E-value=0.12 Score=44.33 Aligned_cols=86 Identities=9% Similarity=0.038 Sum_probs=56.3
Q ss_pred CeEEEecC-CEEEEEEEeCCCCceeeeEcceeccCCC--------------CCCCCCC-c-----cccccCCCCeEEEEE
Q 008109 60 PRIVAREG-DRLLIKVVNHVQHNISIHWHGIRQLRSG--------------WADGPAY-I-----TQCPIQTGQSYIYNF 118 (577)
Q Consensus 60 P~i~v~~G-d~v~v~l~N~l~~~~~iH~HG~~~~~~~--------------~~DGv~~-~-----tq~~i~PG~~~~Y~~ 118 (577)
..|.|..+ ..|+|+|+|.-..+...--|-+-..... ..|=+|. . .-..|.|||+-+..|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 67999985 7999999998543333222322111000 0111221 0 113689999999999
Q ss_pred EECC-Ccee-eEEecccccccccceEeEE
Q 008109 119 TIVG-QRGT-LWWHAHISWLRSTLYGPII 145 (577)
Q Consensus 119 ~~~~-~~Gt-~wYH~H~~~~~~Gl~G~li 145 (577)
+++. ++|+ |-|-|-..++.+.|.|.+.
T Consensus 96 ~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~ 124 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCSFPGHWAMMRGTVK 124 (125)
T ss_pred ECCCCCCCCcceEEEcCCCcHHhceEEEe
Confidence 9852 6786 9999999998888999875
No 64
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=94.77 E-value=0.18 Score=43.11 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=29.8
Q ss_pred CCcEEEEEEEecCceeEEEeeechhhhhcccEEEEEEecC
Q 008109 521 SGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKTAWLVLDG 560 (577)
Q Consensus 521 ~~~~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~ 560 (577)
+++. +.+.++.+|.+-|+|= .|...||...+.|.++
T Consensus 54 ~g~~--~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 54 INEE--YTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred CCCE--EEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 4554 4455578999999998 9999999999999874
No 65
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.58 E-value=0.066 Score=47.38 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=62.3
Q ss_pred EEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEecCc
Q 008109 455 VVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLADNP 534 (577)
Q Consensus 455 ~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adnp 534 (577)
..++.|++++.++.|..- .-|=|=+= ++.... +.+.-.. ...-..--...++.+.||....+-+.+.++
T Consensus 65 ~~v~aG~tv~~v~~n~~e---l~hef~~~---~~~~~~--~~~~~~~---~~~Dme~d~~~~v~L~PG~s~elvv~ft~~ 133 (158)
T COG4454 65 FEVKAGETVRFVLKNEGE---LKHEFTMD---APDKNL--EHVTHMI---LADDMEHDDPNTVTLAPGKSGELVVVFTGA 133 (158)
T ss_pred ccccCCcEEeeeecCccc---ceEEEecc---Cccccc--hhHHHhh---hCCccccCCcceeEeCCCCcEEEEEEecCC
Confidence 466789999999998642 34443332 111111 0000000 000001123468999999999999999999
Q ss_pred eeEEEeeechhhhhcccEEEEEEe
Q 008109 535 GVWFMHCHLEVHTSWGLKTAWLVL 558 (577)
Q Consensus 535 G~w~~HCHil~H~d~GM~~~~~V~ 558 (577)
|.+-|-|-|-+|-+.||-..|.|.
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeC
Confidence 999999999999999999999885
No 66
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=93.18 E-value=0.79 Score=43.53 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=57.4
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEeccc-cccc-
Q 008109 60 PRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHI-SWLR- 137 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~-~~~~- 137 (577)
..|.+..|+.|++++++..- + ||..++.- |+ +.-+-||..-+..|++ +++|+|...|.. .|..
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV----~--Hsf~ip~~----~~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDV----I--HSFWVPEL----GG----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCch----h--hccccccc----Cc----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 68999999999999998642 2 66665432 22 2345689999999986 999999999985 2332
Q ss_pred ccceEeEEEeCCC
Q 008109 138 STLYGPIIILPKR 150 (577)
Q Consensus 138 ~Gl~G~liV~~~~ 150 (577)
+.|.+-++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 7899999988764
No 67
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=92.66 E-value=0.94 Score=38.71 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=48.2
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEecC
Q 008109 454 LVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLADN 533 (577)
Q Consensus 454 ~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adn 533 (577)
.+.++.|++|.|+.++. ...|-.. ..+.+.|+. ......+|+...+.| +.
T Consensus 43 ~ltV~~GdTVtw~~~~d----~~~HnV~---------s~~~~~f~s---------------~~~~~~~G~t~s~Tf--~~ 92 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTGE----GGGHNVV---------SDGDGDLDE---------------SERVSEEGTTYEHTF--EE 92 (115)
T ss_pred EEEECCCCEEEEEECCC----CCCEEEE---------ECCCCCccc---------------cccccCCCCEEEEEe--cC
Confidence 46889999999986542 2345432 222222321 011234566666555 78
Q ss_pred ceeEEEeeechhhhhcccEEEEEEe
Q 008109 534 PGVWFMHCHLEVHTSWGLKTAWLVL 558 (577)
Q Consensus 534 pG~w~~HCHil~H~d~GM~~~~~V~ 558 (577)
||.+-|+|= .|...||-..|.|+
T Consensus 93 ~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 93 PGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CcEEEEEcc--CCCCCCCEEEEEEC
Confidence 999999997 89999999999884
No 68
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=92.54 E-value=0.89 Score=36.35 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=45.5
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEec
Q 008109 453 KLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLAD 532 (577)
Q Consensus 453 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~ad 532 (577)
..+.++.|++|.|+ |.. ...|-.+.+...+ +..+ +. ...+.+|.... +.++
T Consensus 11 ~~i~v~~GdtVt~~--N~d---~~~Hnv~~~~g~~-------~~~~--------------~~-~~~~~~g~~~~--~tf~ 61 (83)
T TIGR02657 11 PELHVKVGDTVTWI--NRE---AMPHNVHFVAGVL-------GEAA--------------LK-GPMMKKEQAYS--LTFT 61 (83)
T ss_pred CEEEECCCCEEEEE--ECC---CCCccEEecCCCC-------cccc--------------cc-ccccCCCCEEE--EECC
Confidence 35788999999985 432 3678887653211 0000 01 11234555554 4567
Q ss_pred CceeEEEeeechhhhhcccEEEEEEe
Q 008109 533 NPGVWFMHCHLEVHTSWGLKTAWLVL 558 (577)
Q Consensus 533 npG~w~~HCHil~H~d~GM~~~~~V~ 558 (577)
.||.|.|||=+ |- +|-..+.|+
T Consensus 62 ~~G~y~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 62 EAGTYDYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred CCEEEEEEcCC--CC--CCeEEEEEC
Confidence 89999999986 44 588888774
No 69
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=92.15 E-value=1.2 Score=46.04 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=52.7
Q ss_pred CCeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCC-CccccccCCCCeEEEEEEECCCceeeEEeccccccc
Q 008109 59 GPRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPA-YITQCPIQTGQSYIYNFTIVGQRGTLWWHAHISWLR 137 (577)
Q Consensus 59 gP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~-~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~ 137 (577)
-..+.+..|+ +++.++|....++.+-.- +|+. .-..-.|.||.+.++.+++ .+|+|-|+|-.+
T Consensus 43 p~~~tVpAG~-~~f~V~N~~~~~~Efe~~----------~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~~--- 106 (375)
T PRK10378 43 PMTLTVNAGK-TQFIIQNHSQKALEWEIL----------KGVMVVEERENIAPGFSQKMTANL--QPGEYDMTCGLL--- 106 (375)
T ss_pred cCceeeCCCC-EEEEEEeCCCCcceEEee----------ccccccccccccCCCCceEEEEec--CCceEEeecCcC---
Confidence 3679999996 899999998766442111 1110 0011469999999988876 699999999432
Q ss_pred ccceEeEEEeCCC
Q 008109 138 STLYGPIIILPKR 150 (577)
Q Consensus 138 ~Gl~G~liV~~~~ 150 (577)
..+.|.|+|.+..
T Consensus 107 ~~~~g~l~Vtg~~ 119 (375)
T PRK10378 107 TNPKGKLIVKGEA 119 (375)
T ss_pred CCCCceEEEeCCC
Confidence 3358899998754
No 70
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=89.53 E-value=3.5 Score=38.41 Aligned_cols=99 Identities=15% Similarity=0.220 Sum_probs=59.2
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCC---CCCCC--CCCCCCeeeeEEeCCCcEEE
Q 008109 452 TKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNK---DPAKF--NLVDPIERNTVGVPSGGWVA 526 (577)
Q Consensus 452 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~---~~~~~--~~~~p~~rDTv~vp~~~~v~ 526 (577)
...+.++.|-.|.+++.|.+ .+.| .|-|+..+........ +.+-. --..+.--..--|.+|....
T Consensus 85 ~m~i~VPAGw~V~i~f~N~~---~l~H-------nl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~ 154 (196)
T PF06525_consen 85 QMTIYVPAGWNVQITFTNQE---SLPH-------NLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSAS 154 (196)
T ss_pred cEEEEEcCCCEEEEEEEcCC---CCCe-------eEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceee
Confidence 44678899999999999964 2444 5666654321101000 00000 00000000001133566665
Q ss_pred EEEEecCceeEEEeeechhhhhcccEEEEEEecC
Q 008109 527 IRFLADNPGVWFMHCHLEVHTSWGLKTAWLVLDG 560 (577)
Q Consensus 527 irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~ 560 (577)
.-+..-.+|.+.+=|-|.-|...||-..|.|.+.
T Consensus 155 ~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 155 GVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred EEEccCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 5565557999999999999999999999998654
No 71
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=89.16 E-value=5.4 Score=34.37 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=54.3
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEe
Q 008109 452 TKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLA 531 (577)
Q Consensus 452 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~a 531 (577)
.+.+.++.|+.+.+.+.+. +..|.|.+-+.... +.+.||....+.|.+
T Consensus 45 ~~~l~lp~g~~v~~~ltS~----DViHsf~ip~~~~k----------------------------~d~~PG~~~~~~~~~ 92 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE----DVIHSFWIPELGIK----------------------------MDAIPGRTNSVTFTP 92 (120)
T ss_dssp SSEEEEETTSEEEEEEEES----SS-EEEEETTCTEE----------------------------EEEBTTCEEEEEEEE
T ss_pred cceecccccceEeEEEEcC----CccccccccccCcc----------------------------cccccccceeeeeee
Confidence 4567899999999999985 46788887665432 236788999999999
Q ss_pred cCceeEEEeeechhhh-hcccEEEEEE
Q 008109 532 DNPGVWFMHCHLEVHT-SWGLKTAWLV 557 (577)
Q Consensus 532 dnpG~w~~HCHil~H~-d~GM~~~~~V 557 (577)
+.||.+-..|...=.. +.-|...+.|
T Consensus 93 ~~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 93 DKPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp SSSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred ccCCcEEEcCccccCcCcCCCeEEEEE
Confidence 9999999999876533 4456666654
No 72
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=87.71 E-value=7.3 Score=31.07 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=35.4
Q ss_pred EEEEEEecCCCCcEEEEEc-Ccee--EEEEeCCccc------C--ceEEeEEEECCCceEEEEEEeCCCCC-CceEEEEe
Q 008109 223 YLLRLVNSALNDDLFFSIA-NHTL--TVVEVDAVYV------K--PFETETLVITPGQTTNVLLETKPHYP-SATFFMTA 290 (577)
Q Consensus 223 ~rlRliN~~~~~~~~~~i~-gh~~--~via~DG~~v------~--P~~~d~l~l~pgeR~dv~v~~~~~~~-~g~y~l~~ 290 (577)
..|++.|.+.. ...|.+. |+.+ .|...+|..+ + -+......|.|||...+-.+.+.... +|.|.+.+
T Consensus 4 ~~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 4 FTLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 56777787743 3356654 5443 3334466655 1 13457899999999999998887531 39998864
No 73
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=85.69 E-value=9.8 Score=34.89 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=58.4
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccC-cCCCC--CCCCCCCC--CCCCeeeeEEeCCCcEEE
Q 008109 452 TKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFG-NFDPN--KDPAKFNL--VDPIERNTVGVPSGGWVA 526 (577)
Q Consensus 452 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g-~~~~~--~~~~~~~~--~~p~~rDTv~vp~~~~v~ 526 (577)
...+-++.|-.|.+++.|.. ..+| .+-++..+.. +..+. .+.+..+. ..+..-..=-+..|....
T Consensus 84 ~mtIyiPaGw~V~V~f~N~e---~~pH-------nl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~s 153 (195)
T TIGR03094 84 AMTIYLPAGWNVYVTFTNYE---SLPH-------NLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRS 153 (195)
T ss_pred ceEEEEeCCCEEEEEEEcCC---CCCc-------cEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeE
Confidence 45678899999999999964 2444 4455544321 10110 00110000 000000001123455655
Q ss_pred EEEEecCceeEEEeeechhhhhcccEEEEEEecC
Q 008109 527 IRFLADNPGVWFMHCHLEVHTSWGLKTAWLVLDG 560 (577)
Q Consensus 527 irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~ 560 (577)
+-+..--||.+.+=|-|.-|.+.||-..+.|...
T Consensus 154 g~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 154 GWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred EEeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 6666678999999999999999999999988643
No 74
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=84.80 E-value=5.5 Score=38.98 Aligned_cols=77 Identities=14% Similarity=0.073 Sum_probs=58.5
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEeccc-cccc-
Q 008109 60 PRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHI-SWLR- 137 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~-~~~~- 137 (577)
..|.+..|..|+++++-. +.- ||..++..+ . |.-.-||...+..+++ +++|+|.-+|+. .|..
T Consensus 137 n~l~lPv~~~V~f~ltS~-DVi-----HsF~IP~l~----~----k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVI-----HSFWIPQLG----G----KIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhc-----eeEEecCCC----c----eeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 899999999999999876 222 455544321 1 2335689999999986 999999999986 3444
Q ss_pred ccceEeEEEeCCCC
Q 008109 138 STLYGPIIILPKRG 151 (577)
Q Consensus 138 ~Gl~G~liV~~~~~ 151 (577)
+.|.|.++|.++++
T Consensus 202 ~~M~~~v~vvs~~~ 215 (247)
T COG1622 202 SFMRFKVIVVSQED 215 (247)
T ss_pred ccceEEEEEEcHHH
Confidence 88999999998875
No 75
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=84.48 E-value=5.4 Score=34.68 Aligned_cols=74 Identities=22% Similarity=0.269 Sum_probs=47.1
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEecC
Q 008109 454 LVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLADN 533 (577)
Q Consensus 454 ~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adn 533 (577)
.++++.|++|+|+-.. ...|-.+.=+-. .|..-+++....+.....-|..
T Consensus 55 ~v~v~pGDTVtw~~~d-----~~~Hnv~~~~~~-----------------------~~~g~~~~~~~~~~s~~~Tfe~-- 104 (128)
T COG3794 55 EVTVKPGDTVTWVNTD-----SVGHNVTAVGGM-----------------------DPEGSGTLKAGINESFTHTFET-- 104 (128)
T ss_pred EEEECCCCEEEEEECC-----CCCceEEEeCCC-----------------------CcccccccccCCCcceEEEecc--
Confidence 4688899999998653 235665432211 0111223333334555555544
Q ss_pred ceeEEEeeechhhhhcccEEEEEEec
Q 008109 534 PGVWFMHCHLEVHTSWGLKTAWLVLD 559 (577)
Q Consensus 534 pG~w~~HCHil~H~d~GM~~~~~V~~ 559 (577)
||.+.|.|- .|..+||-..+.|++
T Consensus 105 ~G~Y~Y~C~--PH~~~gM~G~IvV~~ 128 (128)
T COG3794 105 PGEYTYYCT--PHPGMGMKGKIVVGE 128 (128)
T ss_pred cceEEEEec--cCCCCCcEEEEEeCC
Confidence 999999995 699999999998863
No 76
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=83.70 E-value=5.2 Score=37.92 Aligned_cols=77 Identities=21% Similarity=0.278 Sum_probs=55.6
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEe
Q 008109 452 TKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLA 531 (577)
Q Consensus 452 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~a 531 (577)
.+.+.++.|+.|++.+.+.+ ..|.|.+-+... .+| +-||....+.|.+
T Consensus 116 ~~~l~vp~g~~v~~~~ts~D----V~Hsf~ip~~~~-------------------------k~d---a~PG~~~~~~~~~ 163 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSKD----VIHSFWVPELGG-------------------------KID---AIPGQYNALWFNA 163 (201)
T ss_pred cCEEEEEcCCEEEEEEEeCc----hhhcccccccCc-------------------------eEE---ecCCcEEEEEEEe
Confidence 34578899999999999853 455555433211 233 5578999999999
Q ss_pred cCceeEEEeeechhhh-hcccEEEEEEecC
Q 008109 532 DNPGVWFMHCHLEVHT-SWGLKTAWLVLDG 560 (577)
Q Consensus 532 dnpG~w~~HCHil~H~-d~GM~~~~~V~~~ 560 (577)
+.||.+...|-..-.. +..|...++|.+.
T Consensus 164 ~~~G~y~~~c~e~cG~~h~~M~~~v~v~~~ 193 (201)
T TIGR02866 164 DEPGVYYGYCAELCGAGHSLMLFKVVVVER 193 (201)
T ss_pred CCCEEEEEEehhhCCcCccCCeEEEEEECH
Confidence 9999999999983322 3678888888754
No 77
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=81.24 E-value=13 Score=31.97 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=52.3
Q ss_pred eEEEEecC-CEEEEEEEecCCCC----cEEEEEc-CceeEEEEe-------CCcccCc----eEEeEEEECCCceEEEEE
Q 008109 213 FKLKVKSG-KTYLLRLVNSALND----DLFFSIA-NHTLTVVEV-------DAVYVKP----FETETLVITPGQTTNVLL 275 (577)
Q Consensus 213 ~~l~v~~G-~~~rlRliN~~~~~----~~~~~i~-gh~~~via~-------DG~~v~P----~~~d~l~l~pgeR~dv~v 275 (577)
..|+|+++ +.+.+.|-|.|... .+++-|- .-.+.-++. |-.|+.+ +...+=.|.+||..+|.|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 46999984 89999999998543 2333332 122332222 3345532 234677999999999999
Q ss_pred EeCCCCCCceEEEEeee
Q 008109 276 ETKPHYPSATFFMTARP 292 (577)
Q Consensus 276 ~~~~~~~~g~y~l~~~~ 292 (577)
+++.-.+|++|.+.|..
T Consensus 96 ~~~~l~~g~~Y~f~CSF 112 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCSF 112 (125)
T ss_pred ECCCCCCCCcceEEEcC
Confidence 98753334579999873
No 78
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=80.86 E-value=11 Score=30.02 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=33.2
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCC---ccccccCCCCeEEEEEEECCC---ceeeEE
Q 008109 60 PRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAY---ITQCPIQTGQSYIYNFTIVGQ---RGTLWW 129 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~---~tq~~i~PG~~~~Y~~~~~~~---~Gt~wY 129 (577)
=+|+..-|++..+.|.|...+.. =.|++|... +.+..|.||++.+|+++.+.. +|+|..
T Consensus 16 v~l~f~sgq~~D~~v~d~~g~~v-----------wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 16 VTLQFPSGQRYDFVVKDKEGKEV-----------WRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEEESSS--EEEEEE-TT--EE-----------EETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEEeCCCCEEEEEEECCCCCEE-----------EEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 35666777777777776533221 146788553 345679999999999999733 688864
No 79
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=80.12 E-value=2.7 Score=43.72 Aligned_cols=77 Identities=14% Similarity=0.234 Sum_probs=52.4
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEecccc--ccc
Q 008109 60 PRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHIS--WLR 137 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~--~~~ 137 (577)
-++.|++||.|++.++|-.-....+| |.-.+ .-|+- ..+.|-++-.|.|.+ +.+|.+||.|--. ...
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~th--gfv~p----~~~v~----~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLTH--GFVIP----NYGVN----MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccceeccccc--eeeec----cCceE----EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHH
Confidence 46788999999998888875555554 43332 22221 457888888999987 8999999987532 222
Q ss_pred ccceEeEEEe
Q 008109 138 STLYGPIIIL 147 (577)
Q Consensus 138 ~Gl~G~liV~ 147 (577)
+-|.|-++|+
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 5666777775
No 80
>COG1470 Predicted membrane protein [Function unknown]
Probab=73.89 E-value=1.3e+02 Score=32.11 Aligned_cols=182 Identities=14% Similarity=0.220 Sum_probs=103.5
Q ss_pred EEEecCCE--EEEEEEeCCC--CceeeeEcceeccC-CCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEecccccc
Q 008109 62 IVAREGDR--LLIKVVNHVQ--HNISIHWHGIRQLR-SGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHISWL 136 (577)
Q Consensus 62 i~v~~Gd~--v~v~l~N~l~--~~~~iH~HG~~~~~-~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~ 136 (577)
+.+.++++ +.|++.|+-. +...+-.-|+.--. ..+.+|--.++...+.||++.+...++-. + ...
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~p-s---------~na 347 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYP-S---------LNA 347 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEec-C---------CCC
Confidence 55666765 6678888874 44555555543221 12236665677788999999888887721 0 001
Q ss_pred cccceEeEEEeCCCCCCCCCCCCCCeeeEEeeccccccHHHHHHHhhhCCCCCCCCCeEEEcCcCCCCCCCCCCceeEEE
Q 008109 137 RSTLYGPIIILPKRGIPYPFAKPYKEVPIVFGEWFKSDTEAIINQALQTGGGPNVSDAYTFNGLPGPLYNCSAKDTFKLK 216 (577)
Q Consensus 137 ~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~l~ 216 (577)
..|.|-..|+-.... ..-+|.++-+.- .|.. ....-+-||. ..++
T Consensus 348 ~pG~Ynv~I~A~s~s------~v~~e~~lki~~---------------~g~~--~~~v~l~~g~------------~~lt 392 (513)
T COG1470 348 TPGTYNVTITASSSS------GVTRELPLKIKN---------------TGSY--NELVKLDNGP------------YRLT 392 (513)
T ss_pred CCCceeEEEEEeccc------cceeeeeEEEEe---------------cccc--ceeEEccCCc------------EEEE
Confidence 134444444433321 112344444321 0000 0112233443 4588
Q ss_pred EecCC--EEEEEEEecCCCC--cEEEEEcCceeEEEEeCCcccCceEEeEEEECCCce--EEEEEEeCCCCCCceEEEEe
Q 008109 217 VKSGK--TYLLRLVNSALND--DLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQT--TNVLLETKPHYPSATFFMTA 290 (577)
Q Consensus 217 v~~G~--~~rlRliN~~~~~--~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR--~dv~v~~~~~~~~g~y~l~~ 290 (577)
+++|+ ..+++|-|.|+.. .+.+.+++-+=+-+.+|+..+ + .|.||+| +++.+++++....|+|.+..
T Consensus 393 ~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aGdY~i~i 465 (513)
T COG1470 393 ITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAGDYRITI 465 (513)
T ss_pred ecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCCcEEEEE
Confidence 88884 7899999999665 456777776667777876522 2 2445554 55566666655569999987
Q ss_pred eeccc
Q 008109 291 RPYVT 295 (577)
Q Consensus 291 ~~~~~ 295 (577)
....+
T Consensus 466 ~~ksD 470 (513)
T COG1470 466 TAKSD 470 (513)
T ss_pred EEeec
Confidence 76444
No 81
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=69.48 E-value=1e+02 Score=29.03 Aligned_cols=76 Identities=11% Similarity=-0.057 Sum_probs=51.8
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEeccc-cccc-
Q 008109 60 PRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHI-SWLR- 137 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~-~~~~- 137 (577)
-.+.+..|..++++++-.. . .|+..++.- ++.+. .-||..-+..++. +++|+|.--|.. -|..
T Consensus 116 ~~l~lp~g~~v~~~ltS~D----V--iHsf~vp~l-------~~k~d-~~PG~~~~~~~~~-~~~G~y~g~C~e~CG~~H 180 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSD----V--IHSFSVPDL-------NLKMD-AIPGRINHLFFCP-DRHGVFVGYCSELCGVGH 180 (194)
T ss_pred ceEEEeCCCEEEeeeecCc----c--ccceecccc-------Cceee-cCCCceEEEEEEc-CCCEEEEEEeehhhCcCc
Confidence 3588889999999887663 2 244444422 11222 3489998888885 899999998875 2332
Q ss_pred ccceEeEEEeCCC
Q 008109 138 STLYGPIIILPKR 150 (577)
Q Consensus 138 ~Gl~G~liV~~~~ 150 (577)
+.|.+-+.|.+++
T Consensus 181 ~~M~~~v~v~~~~ 193 (194)
T MTH00047 181 SYMPIVIEVVDVD 193 (194)
T ss_pred ccCcEEEEEEcCC
Confidence 6788888887664
No 82
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=67.75 E-value=73 Score=30.82 Aligned_cols=77 Identities=14% Similarity=0.064 Sum_probs=53.8
Q ss_pred CCeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEeccc-cccc
Q 008109 59 GPRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHI-SWLR 137 (577)
Q Consensus 59 gP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~-~~~~ 137 (577)
...|.+..|..|++.+++.. .| |+..++.- |+ . .-.-||..-...+++ +++|+|+-.|.. -|..
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D----Vi--Hsf~ip~~----~~---k-~d~~Pg~~~~~~~~~-~~~g~y~~~C~e~CG~~ 203 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD----VI--HSWTVPSL----GV---K-VDAIPGRLNQLSFEP-KRPGVFYGQCSEICGAN 203 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc----cc--cceecccc----Cc---e-eECCCCcceeEEEEe-CCCEEEEEECccccCcC
Confidence 36799999999999999964 22 55555432 22 1 234589988888886 899999988875 2322
Q ss_pred -ccceEeEEEeCCC
Q 008109 138 -STLYGPIIILPKR 150 (577)
Q Consensus 138 -~Gl~G~liV~~~~ 150 (577)
+.|.+.+.|.+++
T Consensus 204 H~~M~~~v~v~~~~ 217 (228)
T MTH00140 204 HSFMPIVVEAVPLE 217 (228)
T ss_pred cCCCeEEEEEECHH
Confidence 6677777777654
No 83
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=66.71 E-value=24 Score=34.55 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=55.1
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEe
Q 008109 452 TKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLA 531 (577)
Q Consensus 452 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~a 531 (577)
.+.+.++.|+.|++.+... +..|.|.+-+-.. -+.+-||-.....+.+
T Consensus 136 ~n~l~lPv~~~V~f~ltS~----DViHsF~IP~l~~----------------------------k~d~iPG~~~~~~~~~ 183 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA----DVIHSFWIPQLGG----------------------------KIDAIPGMTTELWLTA 183 (247)
T ss_pred cceEEEeCCCeEEEEEEec----hhceeEEecCCCc----------------------------eeeecCCceEEEEEec
Confidence 3457889999999999874 3556555444322 2234577888889999
Q ss_pred cCceeEEEeeechh-hhhcccEEEEEEecC
Q 008109 532 DNPGVWFMHCHLEV-HTSWGLKTAWLVLDG 560 (577)
Q Consensus 532 dnpG~w~~HCHil~-H~d~GM~~~~~V~~~ 560 (577)
+.+|.|-.+|+..- .-+..|-..+.|.+.
T Consensus 184 ~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~ 213 (247)
T COG1622 184 NKPGTYRGICAEYCGPGHSFMRFKVIVVSQ 213 (247)
T ss_pred CCCeEEEEEcHhhcCCCcccceEEEEEEcH
Confidence 99999999999876 344567677777654
No 84
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=65.61 E-value=50 Score=26.52 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=41.2
Q ss_pred CCeEEEe---cCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEe
Q 008109 59 GPRIVAR---EGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWH 130 (577)
Q Consensus 59 gP~i~v~---~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH 130 (577)
.|.+.++ ....|+|+|.|.-..+..+........ .+.+ .+..|.||++.+..|.+. ..--||.
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y~-----~~~~--~~~~v~ag~~~~~~w~l~--~s~gwYD 73 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAYG-----GGGP--WTYTVAAGQTVSLTWPLA--ASGGWYD 73 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCcC-----CCCC--EEEEECCCCEEEEEEeec--CCCCcEE
Confidence 3545544 235899999999888877776653221 1212 346799999999999873 3334553
No 85
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=65.13 E-value=20 Score=29.33 Aligned_cols=73 Identities=12% Similarity=0.050 Sum_probs=42.0
Q ss_pred EEecCCEEEEEEE--ecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEE-EECCCceEEEEEEeCCCCCCceEEEEeee
Q 008109 216 KVKSGKTYLLRLV--NSALNDDLFFSIANHTLTVVEVDAVYVKPFETETL-VITPGQTTNVLLETKPHYPSATFFMTARP 292 (577)
Q Consensus 216 ~v~~G~~~rlRli--N~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l-~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 292 (577)
--+|||++.+|++ +... ......-....++|..-+|..+ ..... .......++..+..++.+.-|.|.|++..
T Consensus 10 iYrPGetV~~~~~~~~~~~-~~~~~~~~~~~v~i~dp~g~~v---~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 10 IYRPGETVHFRAIVRDLDN-DFKPPANSPVTVTIKDPSGNEV---FRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp EE-TTSEEEEEEEEEEECT-TCSCESSEEEEEEEEETTSEEE---EEEEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred CcCCCCEEEEEEEEecccc-ccccccCCceEEEEECCCCCEE---EEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 3589999999999 6662 1110111122356666666533 11223 34678889999998886656999999875
No 86
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=65.08 E-value=9.8 Score=29.78 Aligned_cols=62 Identities=19% Similarity=0.364 Sum_probs=26.0
Q ss_pred ecCC--EEEEEEEeCCCCce-eeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEEC----CCceeeE
Q 008109 65 REGD--RLLIKVVNHVQHNI-SIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIV----GQRGTLW 128 (577)
Q Consensus 65 ~~Gd--~v~v~l~N~l~~~~-~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~----~~~Gt~w 128 (577)
++|+ ++.++|+|....+. .+.+- +. .+.+|.......+-..|+||++.+..|.+. -.+|+|.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~-l~-~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~ 70 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLS-LS-LPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYT 70 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEE-EE---TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEE-Ee-CCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEE
Confidence 4555 45677888874331 11111 01 144555221111223699999888888773 2367764
No 87
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=64.43 E-value=39 Score=28.34 Aligned_cols=69 Identities=19% Similarity=0.288 Sum_probs=46.0
Q ss_pred EEEEEeCCCCceeeeEcceeccCCCCCC-CCCCccccccCCCCeEEEEEEECCCceeeEEecccccccccceEeEEEeCC
Q 008109 71 LIKVVNHVQHNISIHWHGIRQLRSGWAD-GPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHISWLRSTLYGPIIILPK 149 (577)
Q Consensus 71 ~v~l~N~l~~~~~iH~HG~~~~~~~~~D-Gv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~ 149 (577)
.|+++|.|.....|..|=-.-. .| |+ ..|.||+++..+|.. +--|+--|.|+..........-+.|-..
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~d----~Dlg~-----~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSKD----DDLGW-----HVLKPGQSYSFSFRD-NFFGTTLFWCHFRWPGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCCC----ccCCC-----EECCCCCEEEEEEec-CcCCceeEEEEEEECCccEEEEEEEEec
Confidence 5899999976666666654321 22 33 468999999999985 5668888889876622223555555544
No 88
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=62.86 E-value=36 Score=34.80 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=14.4
Q ss_pred ccccCCCCeEEEEEEE
Q 008109 105 QCPIQTGQSYIYNFTI 120 (577)
Q Consensus 105 q~~i~PG~~~~Y~~~~ 120 (577)
+.+|+|||+.+.+.++
T Consensus 337 ~~pI~PGETr~v~v~a 352 (399)
T TIGR03079 337 QSAIAPGETVEVKMEA 352 (399)
T ss_pred CCCcCCCcceEEEEEE
Confidence 4689999999999998
No 89
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=60.68 E-value=86 Score=25.13 Aligned_cols=67 Identities=18% Similarity=0.282 Sum_probs=41.1
Q ss_pred EEecCCEE--EEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEE-EECCCceEEEEEEeCCCCCCceEEEEeee
Q 008109 216 KVKSGKTY--LLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETL-VITPGQTTNVLLETKPHYPSATFFMTARP 292 (577)
Q Consensus 216 ~v~~G~~~--rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l-~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 292 (577)
.+.+|+.+ .+.+-|.|....-.+.+. +-.||..+ ....| .|.||+...+.+....+. .|.|.|++..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~-~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPS-PGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS--CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCC-CCeEEEEEEE
Confidence 45667654 578899987665444433 33455543 34455 889999999888876642 3899988764
No 90
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=57.84 E-value=1.6e+02 Score=28.52 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=49.5
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEeccc-cccc-
Q 008109 60 PRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHI-SWLR- 137 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~-~~~~- 137 (577)
..+.+..|..|++.++=.. .| |+..++.- |+ .+ -.-||..-...|.+ +++|+|+-.|.. -|..
T Consensus 140 n~lvlP~~~~v~~~~tS~D----Vi--Hsf~ip~~----~~---k~-da~PG~~~~~~~~~-~~~G~~~g~C~e~CG~~H 204 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAED----VL--HSWAVPAL----GV---KM-DAVPGRLNQTAFIA-SRPGVFYGQCSEICGANH 204 (230)
T ss_pred ceEEEecCcEEEEEEEeCc----cc--cceecccc----CC---cc-ccCCCceEEEEEEe-CCceEEEEEChhhccccc
Confidence 4677888888888887664 22 55555422 22 22 23489988888886 899999998875 2222
Q ss_pred ccceEeEEEeCCC
Q 008109 138 STLYGPIIILPKR 150 (577)
Q Consensus 138 ~Gl~G~liV~~~~ 150 (577)
+.|.+.+.|.+++
T Consensus 205 ~~M~~~v~vv~~~ 217 (230)
T MTH00129 205 SFMPIVVEAVPLE 217 (230)
T ss_pred cCCcEEEEEECHH
Confidence 5666666666543
No 91
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=54.98 E-value=59 Score=25.26 Aligned_cols=67 Identities=19% Similarity=0.335 Sum_probs=31.2
Q ss_pred ecCC--EEEEEEEecCCCC--cEEEEEcC-ceeEEEEeCCcccCceEEeEEEECCCceEEEEEEeC--CCCCCceEEEEe
Q 008109 218 KSGK--TYLLRLVNSALND--DLFFSIAN-HTLTVVEVDAVYVKPFETETLVITPGQTTNVLLETK--PHYPSATFFMTA 290 (577)
Q Consensus 218 ~~G~--~~rlRliN~~~~~--~~~~~i~g-h~~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~--~~~~~g~y~l~~ 290 (577)
++|+ .+.+.+-|.+... ...+++.. ..|. +.. .|.... .|.||+...+.++.. +....|+|.|..
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~-~~~-----~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~~ 73 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWT-VSA-----SPASVP--SLPPGESVTVTFTVTVPADAAPGTYTVTV 73 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---------EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeCCCCcc-ccC-----Cccccc--cCCCCCEEEEEEEEECCCCCCCceEEEEE
Confidence 4565 4568888988543 34444442 1222 221 233333 889997776665554 333348999986
Q ss_pred ee
Q 008109 291 RP 292 (577)
Q Consensus 291 ~~ 292 (577)
..
T Consensus 74 ~a 75 (78)
T PF10633_consen 74 TA 75 (78)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 92
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=54.61 E-value=16 Score=30.92 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=28.9
Q ss_pred EEEEeCCCCc---eeeeEcceeccCC---CCCCCCCCccccccCCCCeEEEEEEE
Q 008109 72 IKVVNHVQHN---ISIHWHGIRQLRS---GWADGPAYITQCPIQTGQSYIYNFTI 120 (577)
Q Consensus 72 v~l~N~l~~~---~~iH~HG~~~~~~---~~~DGv~~~tq~~i~PG~~~~Y~~~~ 120 (577)
|++.|....+ .+=|||=-...+. -..+||-| .|..|+||++|+|.=-.
T Consensus 34 itI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVG-eQP~l~PG~~y~YtSg~ 87 (126)
T COG2967 34 VTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVG-EQPLLAPGEEYQYTSGC 87 (126)
T ss_pred EEEecCCCccceeeeeEEEEecCCCcEEEEEcCceec-cccccCCCCceEEcCCc
Confidence 6667776433 4567774432221 01344443 58899999999997543
No 93
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=52.57 E-value=2.2e+02 Score=27.68 Aligned_cols=75 Identities=12% Similarity=0.010 Sum_probs=48.2
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEeccc-cccc-
Q 008109 60 PRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHI-SWLR- 137 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~-~~~~- 137 (577)
..|.+..|+.|++.++... .| |+..++. -|+ .+. .-||..-...|.+ .++|+|+--|.. -|..
T Consensus 144 n~lvlP~~~~v~~~itS~D----Vi--Hsf~vp~----lg~---k~d-aiPG~~~~~~~~~-~~~G~y~g~Cse~CG~~H 208 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAAD----VL--HSFAVPS----LSV---KID-AVPGRLNQTSFFI-KRPGVFYGQCSEICGANH 208 (234)
T ss_pred eEEEEecCcEEEEEEEeCc----hh--ccccccc----cCc---eeE-ccCCceEeEEEEe-CCCEEEEEEChhhcCccc
Confidence 4688999999999999973 23 4444442 122 122 3478887778886 899999888774 2222
Q ss_pred ccceEeEEEeCC
Q 008109 138 STLYGPIIILPK 149 (577)
Q Consensus 138 ~Gl~G~liV~~~ 149 (577)
+-|-..+.|.++
T Consensus 209 s~M~i~v~vv~~ 220 (234)
T MTH00051 209 SFMPIVIEGVSL 220 (234)
T ss_pred ccCeeEEEEECH
Confidence 455555555544
No 94
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=50.66 E-value=1.2e+02 Score=26.98 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=35.7
Q ss_pred CeEEEecCCEEEEEEEeCCC---CceeeeEcceec-----cC-CCCCCCCCCc-----cccccCCCCeEEEEEEEC
Q 008109 60 PRIVAREGDRLLIKVVNHVQ---HNISIHWHGIRQ-----LR-SGWADGPAYI-----TQCPIQTGQSYIYNFTIV 121 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l~---~~~~iH~HG~~~-----~~-~~~~DGv~~~-----tq~~i~PG~~~~Y~~~~~ 121 (577)
+.=.+.+|.+..|.+.=... ....--.||+-. +- ....||-... --||+.+||.++|.+.++
T Consensus 48 ~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 48 TPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSLP 123 (158)
T ss_pred CceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEee
Confidence 34567788776666554442 222233344432 21 2225553322 349999999999999985
No 95
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=47.65 E-value=53 Score=24.67 Aligned_cols=46 Identities=11% Similarity=0.247 Sum_probs=29.5
Q ss_pred EEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCceEE
Q 008109 215 LKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQTTN 272 (577)
Q Consensus 215 l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~d 272 (577)
+++.+|+..+||.-... .+.+.+...+|.. +|. .+-+.|.+||++.
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~ 47 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EGD------PDDYWLQAGDSLR 47 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CCC------CCCEEECCCCEEE
Confidence 56778898888855443 3777777777764 442 3445556666554
No 96
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=47.28 E-value=70 Score=24.17 Aligned_cols=66 Identities=11% Similarity=0.294 Sum_probs=36.0
Q ss_pred eeEEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEee
Q 008109 212 TFKLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTAR 291 (577)
Q Consensus 212 ~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~ 291 (577)
...++++.|+++++.+-+.+. ...+.+...+|..+....... -..+..-.+.+...++ |+|.|+..
T Consensus 4 ~y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~~~---GtYyi~V~ 69 (70)
T PF04151_consen 4 YYSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAPAA---GTYYIRVY 69 (70)
T ss_dssp EEEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEESSS---EEEEEEEE
T ss_pred EEEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcCCC---EEEEEEEE
Confidence 357899999999988876664 222455555554221100000 0112223334555555 99999864
No 97
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=44.75 E-value=39 Score=27.45 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=29.7
Q ss_pred EEEEEEEecCCCCcEEEEEcCceeEEEEeCCccc----CceEEeEEEECCCceEEE
Q 008109 222 TYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYV----KPFETETLVITPGQTTNV 273 (577)
Q Consensus 222 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v----~P~~~d~l~l~pgeR~dv 273 (577)
.|++||-|.+.. .+.|-...|.|...||... .-+....=.|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 588999999966 3677788888888777532 112224557888886654
No 98
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=44.68 E-value=59 Score=28.30 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=35.3
Q ss_pred EEEEEEEecCCCCcEEEEEcCceeEEEEeCCccc----CceEEeEEEECCCceEEE
Q 008109 222 TYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYV----KPFETETLVITPGQTTNV 273 (577)
Q Consensus 222 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v----~P~~~d~l~l~pgeR~dv 273 (577)
.|++||.|.+.. ...|-...|.|...||... ..+....=.|.|||.++.
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 688999998743 3678888899988888643 223445668888887654
No 99
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=44.02 E-value=2e+02 Score=26.99 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=54.9
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEec
Q 008109 453 KLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLAD 532 (577)
Q Consensus 453 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~ad 532 (577)
+...++.|+.+++.+... +..|.|.+-.... .+|. -||-...+.|.++
T Consensus 116 ~~l~lp~g~~v~~~ltS~----DViHsf~vp~l~~-------------------------k~d~---~PG~~~~~~~~~~ 163 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS----DVIHSFSVPDLNL-------------------------KMDA---IPGRINHLFFCPD 163 (194)
T ss_pred ceEEEeCCCEEEeeeecC----ccccceeccccCc-------------------------eeec---CCCceEEEEEEcC
Confidence 446789999999999864 4667666544321 2343 3788899999999
Q ss_pred CceeEEEeeechhhh-hcccEEEEEEecC
Q 008109 533 NPGVWFMHCHLEVHT-SWGLKTAWLVLDG 560 (577)
Q Consensus 533 npG~w~~HCHil~H~-d~GM~~~~~V~~~ 560 (577)
.+|.+-.-|.-+-=. +..|-..++|.+.
T Consensus 164 ~~G~y~g~C~e~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 164 RHGVFVGYCSELCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred CCEEEEEEeehhhCcCcccCcEEEEEEcC
Confidence 999999999976533 4567777777653
No 100
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=43.89 E-value=65 Score=31.14 Aligned_cols=63 Identities=10% Similarity=0.074 Sum_probs=43.9
Q ss_pred eEEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeee
Q 008109 213 FKLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARP 292 (577)
Q Consensus 213 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~ 292 (577)
-.+.+..|+.+||++-..... |+|.+. .-.-....-||..-.+.++++++ |.|..+|..
T Consensus 139 nel~lP~g~pV~~~ltS~DVi--HSF~VP----------------~l~~K~DaiPG~~n~~~~~~~~~---G~y~g~CaE 197 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSVM--NSFFIP----------------QLGSQIYAMAGMQTKLHLIANEP---GVYDGISAN 197 (226)
T ss_pred ceEEEECCCEEEEEEEECchh--hhhhhh----------------hcCCeeecCCCceEEEEEEeCCC---EEEEEEchh
Confidence 357888888888887766533 223333 22233445589998999999998 999999987
Q ss_pred cccC
Q 008109 293 YVTG 296 (577)
Q Consensus 293 ~~~~ 296 (577)
+++.
T Consensus 198 ~CG~ 201 (226)
T TIGR01433 198 YSGP 201 (226)
T ss_pred hcCc
Confidence 6653
No 101
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=42.90 E-value=1.3e+02 Score=25.52 Aligned_cols=21 Identities=5% Similarity=0.164 Sum_probs=12.7
Q ss_pred EEEEEecCCC-CcEEEEEcCce
Q 008109 224 LLRLVNSALN-DDLFFSIANHT 244 (577)
Q Consensus 224 rlRliN~~~~-~~~~~~i~gh~ 244 (577)
++|++|++.. ..+.+.++|..
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE
Confidence 5777777765 35556555443
No 102
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=42.09 E-value=1.1e+02 Score=29.52 Aligned_cols=76 Identities=13% Similarity=0.264 Sum_probs=54.8
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEe
Q 008109 452 TKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLA 531 (577)
Q Consensus 452 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~a 531 (577)
.+.+.++.|+.|++.+.+.+ ..|.|.+-.... ..| +-||....+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D----ViHsf~ip~~~~-------------------------k~d---~~Pg~~~~~~~~~ 186 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD----VIHSWTVPSLGV-------------------------KVD---AIPGRLNQLSFEP 186 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc----cccceeccccCc-------------------------eeE---CCCCcceeEEEEe
Confidence 45678899999999999853 556555433211 122 4478888899999
Q ss_pred cCceeEEEeeechhhh-hcccEEEEEEec
Q 008109 532 DNPGVWFMHCHLEVHT-SWGLKTAWLVLD 559 (577)
Q Consensus 532 dnpG~w~~HCHil~H~-d~GM~~~~~V~~ 559 (577)
+.||.+...|.-+-.. +..|-..++|.+
T Consensus 187 ~~~g~y~~~C~e~CG~~H~~M~~~v~v~~ 215 (228)
T MTH00140 187 KRPGVFYGQCSEICGANHSFMPIVVEAVP 215 (228)
T ss_pred CCCEEEEEECccccCcCcCCCeEEEEEEC
Confidence 9999999999977655 556777777664
No 103
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=41.43 E-value=1.7e+02 Score=25.32 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=42.7
Q ss_pred EEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCccc-------CceEEeEEEECCCceEEEEEEeCCC
Q 008109 215 LKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYV-------KPFETETLVITPGQTTNVLLETKPH 280 (577)
Q Consensus 215 l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v-------~P~~~d~l~l~pgeR~dv~v~~~~~ 280 (577)
|++.....|+|++-..+ ...|.|+|.. ||..++..- .+....++.|..|++|+|.|...+.
T Consensus 54 ~~~~~~G~y~f~~~~~d---~~~l~idg~~--vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~ 121 (145)
T PF07691_consen 54 FKPPETGTYTFSLTSDD---GARLWIDGKL--VIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNR 121 (145)
T ss_dssp EEESSSEEEEEEEEESS---EEEEEETTEE--EEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEEC
T ss_pred EecccCceEEEEEEecc---cEEEEECCEE--EEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEEC
Confidence 67766678999998433 4567888877 466665432 3456678999999999999987765
No 104
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.27 E-value=3.4e+02 Score=26.31 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=46.0
Q ss_pred CCeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEeccc-cccc
Q 008109 59 GPRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHI-SWLR 137 (577)
Q Consensus 59 gP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~-~~~~ 137 (577)
...+.+..|..|++.++=.. .| |+..++. -|+ . .-.-||..-...+.. +++|+|+--|.. -|..
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D----Vi--Hsf~iP~----lg~---k-~daiPG~~~~~~~~~-~~~G~~~g~Cse~CG~~ 203 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAED----VL--HSWTVPA----LGV---K-MDAVPGRLNQATFII-SRPGLYYGQCSEICGAN 203 (230)
T ss_pred CCeEEEecCCEEEEEEEcCc----cc--ccccccc----cCc---e-eEecCCceEEEEEEe-CCcEEEEEEchhhcCcC
Confidence 35788888888888887663 22 4555442 222 1 223478888888885 899999988874 2222
Q ss_pred -ccceEeEEEeC
Q 008109 138 -STLYGPIIILP 148 (577)
Q Consensus 138 -~Gl~G~liV~~ 148 (577)
+-|...+.|.+
T Consensus 204 Hs~M~~~v~vv~ 215 (230)
T MTH00185 204 HSFMPIVVEAVP 215 (230)
T ss_pred cCCCeEEEEEEC
Confidence 34544444443
No 105
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=40.03 E-value=21 Score=29.43 Aligned_cols=33 Identities=33% Similarity=0.289 Sum_probs=27.5
Q ss_pred EEEECCCCCCCeEEEecCCEEEEEEEeCCCCce
Q 008109 50 LVSVNGQFPGPRIVAREGDRLLIKVVNHVQHNI 82 (577)
Q Consensus 50 ~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~ 82 (577)
-+.+||+.--|.=.|+.||.|+|++.|.+-.-.
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~~~~~v~ 67 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGNKEFTVK 67 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCCcEEEEE
Confidence 356899988899999999999999999974433
No 106
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=37.59 E-value=82 Score=30.19 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=43.0
Q ss_pred EEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeeec
Q 008109 214 KLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARPY 293 (577)
Q Consensus 214 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 293 (577)
.+.+..|+.+||++-..... ++|.+ |.-.-....-||..-.+-++++++ |.|...|..+
T Consensus 131 ~l~iP~g~~v~~~ltS~DVi--Hsf~v----------------P~l~~k~daiPG~~~~~~~~~~~~---G~y~g~Cae~ 189 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSADTM--TSFWI----------------PQLGGQKYAMTGMTMNWYLQADQV---GTYRGRNANF 189 (217)
T ss_pred cEEEECCCEEEEEEECCchh--hhhhc----------------hhhCceeecCCCceEEEEEEeCCC---EEEEEEehhh
Confidence 47777888887777665532 22333 322334455589999999999998 9999999876
Q ss_pred ccC
Q 008109 294 VTG 296 (577)
Q Consensus 294 ~~~ 296 (577)
++.
T Consensus 190 CG~ 192 (217)
T TIGR01432 190 NGE 192 (217)
T ss_pred cCc
Confidence 543
No 107
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=36.94 E-value=2.8e+02 Score=26.54 Aligned_cols=76 Identities=9% Similarity=-0.008 Sum_probs=51.3
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEeccc-ccc-c
Q 008109 60 PRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHI-SWL-R 137 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~-~~~-~ 137 (577)
..|.+..|..|++.++-.. .| |...++.- ++.+..| ||..-...|++ +++|+|+=.|-- -|. -
T Consensus 130 n~l~iP~g~~v~~~ltS~D----Vi--Hsf~vP~l-------~~k~dai-PG~~~~~~~~~-~~~G~y~g~Cae~CG~~H 194 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSAD----TM--TSFWIPQL-------GGQKYAM-TGMTMNWYLQA-DQVGTYRGRNANFNGEGF 194 (217)
T ss_pred CcEEEECCCEEEEEEECCc----hh--hhhhchhh-------CceeecC-CCceEEEEEEe-CCCEEEEEEehhhcCccc
Confidence 5689999999999998774 23 34433321 1223333 89999999996 899999888763 232 2
Q ss_pred ccceEeEEEeCCC
Q 008109 138 STLYGPIIILPKR 150 (577)
Q Consensus 138 ~Gl~G~liV~~~~ 150 (577)
+-|..-+.|.+++
T Consensus 195 s~M~~~v~v~~~~ 207 (217)
T TIGR01432 195 ADQTFDVNAVSEK 207 (217)
T ss_pred cCCeEEEEEeCHH
Confidence 6677777776554
No 108
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=36.44 E-value=79 Score=32.56 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=11.1
Q ss_pred cccCCCCeEEEEEEE
Q 008109 106 CPIQTGQSYIYNFTI 120 (577)
Q Consensus 106 ~~i~PG~~~~Y~~~~ 120 (577)
.+|+|||+.+.+.++
T Consensus 319 ~pI~PGETrtl~V~a 333 (381)
T PF04744_consen 319 SPIAPGETRTLTVEA 333 (381)
T ss_dssp S-B-TT-EEEEEEEE
T ss_pred CCcCCCceEEEEEEe
Confidence 589999999999998
No 109
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=35.73 E-value=1.8e+02 Score=25.03 Aligned_cols=62 Identities=24% Similarity=0.346 Sum_probs=36.4
Q ss_pred CCeEEEecCCEEEEEEEeCC---CCceeeeEcc----eecc-CCCCCCCCCCccccccCCCCeEEEEEEEC
Q 008109 59 GPRIVAREGDRLLIKVVNHV---QHNISIHWHG----IRQL-RSGWADGPAYITQCPIQTGQSYIYNFTIV 121 (577)
Q Consensus 59 gP~i~v~~Gd~v~v~l~N~l---~~~~~iH~HG----~~~~-~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~ 121 (577)
+..=.+++|+.+.+.+.=.. ........|| +..+ +....||=-+ ..|||.+|++++|.+.++
T Consensus 19 ~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~-l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 19 GDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKY-VKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred CCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCccc-EeCCCcCCcEEEEEEeee
Confidence 44566788887776665222 2333444444 3333 2122455212 369999999999999873
No 110
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=35.70 E-value=1e+02 Score=27.46 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=26.4
Q ss_pred EECCCceEEEEE-EeCCCCCCceEEEEeeecccCC
Q 008109 264 VITPGQTTNVLL-ETKPHYPSATFFMTARPYVTGL 297 (577)
Q Consensus 264 ~l~pgeR~dv~v-~~~~~~~~g~y~l~~~~~~~~~ 297 (577)
.|.||+.+.|.+ ...+|..+|.|.+.+..+..+.
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p~G~ 132 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVTAFPPGD 132 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEEEECCCC
Confidence 467899999999 4556666799999998765553
No 111
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=35.49 E-value=12 Score=38.58 Aligned_cols=46 Identities=20% Similarity=0.173 Sum_probs=0.0
Q ss_pred ceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEec
Q 008109 81 NISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHA 131 (577)
Q Consensus 81 ~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~ 131 (577)
...+-|.|+..+.. +++...-.--.|+||++++-+|++ +.+|+...
T Consensus 77 g~~V~F~Gi~~~~~--~~~L~~d~F~~L~pG~sve~~fDi---A~~~dLs~ 122 (359)
T PF02102_consen 77 GKEVPFTGIRLRYD--TSGLTEDAFQTLAPGESVEVEFDI---AETHDLSS 122 (359)
T ss_dssp ---------------------------------------------------
T ss_pred CcccccccEEEEEe--cCCCCHHHceecCCCCeEEEEEcc---hheeecCC
Confidence 45577778876654 455332223579999999999987 77777744
No 112
>PRK11372 lysozyme inhibitor; Provisional
Probab=33.93 E-value=2e+02 Score=24.27 Aligned_cols=20 Identities=25% Similarity=0.183 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHhccccee
Q 008109 7 LMGFVLLTVLSLCLLPESVL 26 (577)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~ 26 (577)
.||.+|+++++++|.+|...
T Consensus 2 ~mk~ll~~~~~~lL~gCs~~ 21 (109)
T PRK11372 2 SMKKLLIICLPVLLTGCSAY 21 (109)
T ss_pred chHHHHHHHHHHHHHHhcCC
Confidence 36777767766666666653
No 113
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=32.97 E-value=1.3e+02 Score=31.37 Aligned_cols=63 Identities=21% Similarity=0.253 Sum_probs=43.0
Q ss_pred eeEEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEee
Q 008109 212 TFKLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTAR 291 (577)
Q Consensus 212 ~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~ 291 (577)
...+++++|+ ++|.+.|.+.... .| +++ +|+.+ ....=.|+||.+..+.+.+ ++ |+|.+.|.
T Consensus 43 p~~~tVpAG~-~~f~V~N~~~~~~-Ef-------e~~--~~~~v---v~e~EnIaPG~s~~l~~~L-~p---GtY~~~C~ 104 (375)
T PRK10378 43 PMTLTVNAGK-TQFIIQNHSQKAL-EW-------EIL--KGVMV---VEERENIAPGFSQKMTANL-QP---GEYDMTCG 104 (375)
T ss_pred cCceeeCCCC-EEEEEEeCCCCcc-eE-------Eee--ccccc---cccccccCCCCceEEEEec-CC---ceEEeecC
Confidence 3679999996 8999999985543 23 333 22211 0112389999988887777 45 99999995
Q ss_pred e
Q 008109 292 P 292 (577)
Q Consensus 292 ~ 292 (577)
.
T Consensus 105 ~ 105 (375)
T PRK10378 105 L 105 (375)
T ss_pred c
Confidence 3
No 114
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=31.84 E-value=3.4e+02 Score=24.12 Aligned_cols=64 Identities=20% Similarity=0.347 Sum_probs=44.7
Q ss_pred CEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceE-------EeEEEECCCceE-EEEEEeCCCCCCceEEEEee
Q 008109 221 KTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFE-------TETLVITPGQTT-NVLLETKPHYPSATFFMTAR 291 (577)
Q Consensus 221 ~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~-------~d~l~l~pgeR~-dv~v~~~~~~~~g~y~l~~~ 291 (577)
.+|-|.+-|.|... +.++...++|+ +||..+.|.. .++|.|.|||-- ++.+.-... |.-.+...
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~lS---Gyhri~V~ 141 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEALS---GYHRIVVS 141 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccCCC---cceEEEEE
Confidence 47889999999443 56788888887 8998886543 257889999987 554444333 55555544
No 115
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=31.16 E-value=2e+02 Score=24.31 Aligned_cols=50 Identities=20% Similarity=0.307 Sum_probs=28.9
Q ss_pred EEEEEEEecCCCC-cEEEEEcCce-eEEEEeCCcccCceEEeEEEECCCceEEEEEEeCCC
Q 008109 222 TYLLRLVNSALND-DLFFSIANHT-LTVVEVDAVYVKPFETETLVITPGQTTNVLLETKPH 280 (577)
Q Consensus 222 ~~rlRliN~~~~~-~~~~~i~gh~-~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~ 280 (577)
.|+++|+|-+... .+.+.+.|.. +++.. ..+.+.|.||+..++-|....+
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~---------~~~~i~v~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQG---------PENTITVPPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-E---------S--EEEE-TT-EEEEEEEEEE-
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEEC---------CCcceEECCCCEEEEEEEEEEC
Confidence 7899999999766 5667777642 33311 2478899999988876665543
No 116
>PRK13202 ureB urease subunit beta; Reviewed
Probab=31.06 E-value=1.1e+02 Score=25.48 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=39.7
Q ss_pred eEEEecC--CEEEEEEEeCCCCc--eeeeEcceeccCCCCCCC---------CCCccccccCCCCeEEEEEE
Q 008109 61 RIVAREG--DRLLIKVVNHVQHN--ISIHWHGIRQLRSGWADG---------PAYITQCPIQTGQSYIYNFT 119 (577)
Q Consensus 61 ~i~v~~G--d~v~v~l~N~l~~~--~~iH~HG~~~~~~~~~DG---------v~~~tq~~i~PG~~~~Y~~~ 119 (577)
.|.+++| ++++|+|+|.-+.+ ..-|+|=..+...--.|= .|.-|..-..||++.+-+.-
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 4899999 59999999999665 456888777655432332 23233345677777776664
No 117
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=30.80 E-value=69 Score=22.58 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=30.4
Q ss_pred CCCeeee-EEeCCCcEEEEEEEecCceeEEEeeechhhhhc
Q 008109 510 DPIERNT-VGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSW 549 (577)
Q Consensus 510 ~p~~rDT-v~vp~~~~v~irf~adnpG~w~~HCHil~H~d~ 549 (577)
.|..+-+ |..+.|+...++++-..-..+=+||..+.|.+.
T Consensus 5 kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 5 KPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 4444443 334678888889998889999999999999763
No 118
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=30.60 E-value=4e+02 Score=24.26 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=51.3
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEe
Q 008109 452 TKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLA 531 (577)
Q Consensus 452 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~a 531 (577)
.+.+.++.|..+++.+... +..|.|.+-.-. ...|. -||-...+.+.+
T Consensus 72 Dn~LvLP~g~~Vr~~lTS~----DVIHSF~VP~lg-------------------------vK~Da---vPGr~n~l~~~~ 119 (162)
T PTZ00047 72 DKRLTLPTRTHIRFLITAT----DVIHSWSVPSLG-------------------------IKADA---IPGRLHKINTFI 119 (162)
T ss_pred cCCEEEeCCCEEEEEEEeC----ccceeeeccccC-------------------------ceeec---cCCceEEEEEec
Confidence 3456789999999999864 355666554332 12343 367777888999
Q ss_pred cCceeEEEeeechhhh-hcccEEEEEEec
Q 008109 532 DNPGVWFMHCHLEVHT-SWGLKTAWLVLD 559 (577)
Q Consensus 532 dnpG~w~~HCHil~H~-d~GM~~~~~V~~ 559 (577)
+.+|.+...|.-+-=. +..|-..++|.+
T Consensus 120 ~~~G~y~gqCsElCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 120 LREGVFYGQCSEMCGTLHGFMPIVVEAVS 148 (162)
T ss_pred CCCeEEEEEcchhcCcCccCceEEEEEeC
Confidence 9999999999865422 234666666643
No 119
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=30.48 E-value=1.4e+02 Score=28.78 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=52.8
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEecC
Q 008109 454 LVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLADN 533 (577)
Q Consensus 454 ~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~adn 533 (577)
-+.++.|+.|++.+...+ ..|. |+|-+-+ ..+|.+ ||-...+.|++|.
T Consensus 140 el~lP~g~pV~~~ltS~D----ViHS-------F~VP~l~------------------~K~Dai---PG~~n~~~~~~~~ 187 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNS----VMNS-------FFIPQLG------------------SQIYAM---AGMQTKLHLIANE 187 (226)
T ss_pred eEEEECCCEEEEEEEECc----hhhh-------hhhhhcC------------------CeeecC---CCceEEEEEEeCC
Confidence 468899999999998743 4454 5554332 235654 7888889999999
Q ss_pred ceeEEEeeechhhh-hcccEEEEEEec
Q 008109 534 PGVWFMHCHLEVHT-SWGLKTAWLVLD 559 (577)
Q Consensus 534 pG~w~~HCHil~H~-d~GM~~~~~V~~ 559 (577)
||.|.-.|--.-=. +..|...+.|.+
T Consensus 188 ~G~y~g~CaE~CG~~Ha~M~~~V~v~~ 214 (226)
T TIGR01433 188 PGVYDGISANYSGPGFSGMKFKAIATD 214 (226)
T ss_pred CEEEEEEchhhcCcCccCCeEEEEEEC
Confidence 99999999754322 356777777764
No 120
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=30.36 E-value=83 Score=27.39 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=13.7
Q ss_pred CCCCCCccccccCCCCeEEEEE
Q 008109 97 ADGPAYITQCPIQTGQSYIYNF 118 (577)
Q Consensus 97 ~DGv~~~tq~~i~PG~~~~Y~~ 118 (577)
.+||-| .|..|.||++|+|.=
T Consensus 66 G~GVVG-~qP~L~PGe~F~Y~S 86 (127)
T PRK05461 66 GEGVVG-EQPVLAPGESFEYTS 86 (127)
T ss_pred CCceec-CCceECCCCCeEEeC
Confidence 344433 356789999877754
No 121
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=30.28 E-value=3.3e+02 Score=24.15 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=18.3
Q ss_pred CCCCeEEEecCCEE-EEEEEeCCCC
Q 008109 57 FPGPRIVAREGDRL-LIKVVNHVQH 80 (577)
Q Consensus 57 ~pgP~i~v~~Gd~v-~v~l~N~l~~ 80 (577)
.+|-.|++.+|+.. +|++.|.|+-
T Consensus 110 ~~gs~i~l~PG~Vg~ev~vn~~lSG 134 (154)
T COG3354 110 VNGSSIRLSPGQVGREVTVNEALSG 134 (154)
T ss_pred cCCCeeEecCCceeeEEEeccCCCc
Confidence 45678889999988 7777777663
No 122
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=30.17 E-value=1.1e+02 Score=31.19 Aligned_cols=62 Identities=11% Similarity=0.144 Sum_probs=45.4
Q ss_pred EEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeeec
Q 008109 214 KLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARPY 293 (577)
Q Consensus 214 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 293 (577)
.+.+..|+.+||++-...... +|.|. ...-.+...||..-.+.+.++++ |.|...|..+
T Consensus 152 eL~iP~g~pV~f~lTS~DViH--SF~IP----------------~Lg~K~damPG~~n~l~~~a~~~---G~Y~G~CaEy 210 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSVMN--SFFIP----------------RLGSQIYAMAGMQTRLHLIANEP---GTYDGISASY 210 (315)
T ss_pred cEEEecCCEEEEEEEEchhhh--hhhhh----------------hhCCeeecCCCceeEEEEEcCCC---EEEEEEChhh
Confidence 478889999999888777433 33333 23334556688888888999998 9999999877
Q ss_pred ccC
Q 008109 294 VTG 296 (577)
Q Consensus 294 ~~~ 296 (577)
++.
T Consensus 211 CG~ 213 (315)
T PRK10525 211 SGP 213 (315)
T ss_pred cCc
Confidence 653
No 123
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=29.74 E-value=3.4e+02 Score=23.26 Aligned_cols=62 Identities=19% Similarity=0.184 Sum_probs=38.0
Q ss_pred EEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCccc-CceEEeEEEECCCceEEEEEEeCCCC
Q 008109 215 LKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYV-KPFETETLVITPGQTTNVLLETKPHY 281 (577)
Q Consensus 215 l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v-~P~~~d~l~l~pgeR~dv~v~~~~~~ 281 (577)
|++.....|+|.+... ....+.|+|.. |+..++..- .+.....+.|..|++|.|.|+..+..
T Consensus 52 i~~~~~G~y~f~~~~~---~~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~ 114 (136)
T smart00758 52 LKPPEDGEYTFSITSD---DGARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAG 114 (136)
T ss_pred EECCCCccEEEEEEcC---CcEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCC
Confidence 5555555688888533 34467788763 444433321 23344568888888888888876653
No 124
>PF15240 Pro-rich: Proline-rich
Probab=29.27 E-value=30 Score=31.83 Aligned_cols=9 Identities=56% Similarity=0.630 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 008109 8 MGFVLLTVL 16 (577)
Q Consensus 8 ~~~~~~~~~ 16 (577)
|++|||+++
T Consensus 1 MLlVLLSvA 9 (179)
T PF15240_consen 1 MLLVLLSVA 9 (179)
T ss_pred ChhHHHHHH
Confidence 444444443
No 125
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=29.21 E-value=2.6e+02 Score=24.00 Aligned_cols=62 Identities=15% Similarity=0.242 Sum_probs=34.2
Q ss_pred CeEEEecCCEEEEEEEeCCC---C--ceeeeEc--ceeccCCC-CCCCCCCc-cccccCCCCeEEEEEEEC
Q 008109 60 PRIVAREGDRLLIKVVNHVQ---H--NISIHWH--GIRQLRSG-WADGPAYI-TQCPIQTGQSYIYNFTIV 121 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l~---~--~~~iH~H--G~~~~~~~-~~DGv~~~-tq~~i~PG~~~~Y~~~~~ 121 (577)
..=.+++|+.+.+.+.=... . .+.+|+. |+.++... ..|+=-.. ..|||.+|+.++|.+.++
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeee
Confidence 44556778877666553221 1 2223332 54444221 13441111 459999999999999873
No 126
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=28.66 E-value=63 Score=28.81 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=21.3
Q ss_pred eCCCcEEEEEEEe-cCc---eeEEEeeech
Q 008109 519 VPSGGWVAIRFLA-DNP---GVWFMHCHLE 544 (577)
Q Consensus 519 vp~~~~v~irf~a-dnp---G~w~~HCHil 544 (577)
|+||..+.|.++. .|| |.|.|+|-..
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 6899999999965 566 9999999653
No 127
>PRK13681 hypothetical protein; Provisional
Probab=28.57 E-value=1.6e+02 Score=19.11 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=23.2
Q ss_pred cchHHHHHHHHHHHHhcccceeeeeEEEEEEE
Q 008109 5 PALMGFVLLTVLSLCLLPESVLAITRHYKFNV 36 (577)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 36 (577)
+++.|..+++|+++|.+....-=...-|++-+
T Consensus 1 M~~~K~~~i~lfalmAiGgigGvmLaGy~~i~ 32 (35)
T PRK13681 1 MRIAKIGVIALFLLMAIGGIGGVMLAGYTFIL 32 (35)
T ss_pred CcHHHHHHHHHHHHHHhcCccceeeeeeEEEE
Confidence 35678888999999998877655555565544
No 128
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=28.40 E-value=2.5e+02 Score=25.49 Aligned_cols=62 Identities=8% Similarity=0.114 Sum_probs=42.3
Q ss_pred EEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeeec
Q 008109 214 KLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARPY 293 (577)
Q Consensus 214 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 293 (577)
.+.+..|+.+||++..+... +.|.+.....+ +..-||..-.+.+.+.++ |.|...|..+
T Consensus 74 ~LvLP~g~~Vr~~lTS~DVI--HSF~VP~lgvK----------------~DavPGr~n~l~~~~~~~---G~y~gqCsEl 132 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATDVI--HSWSVPSLGIK----------------ADAIPGRLHKINTFILRE---GVFYGQCSEM 132 (162)
T ss_pred CEEEeCCCEEEEEEEeCccc--eeeeccccCce----------------eeccCCceEEEEEecCCC---eEEEEEcchh
Confidence 47888999998887766533 45555544332 233367766777777777 9999999876
Q ss_pred ccC
Q 008109 294 VTG 296 (577)
Q Consensus 294 ~~~ 296 (577)
++.
T Consensus 133 CG~ 135 (162)
T PTZ00047 133 CGT 135 (162)
T ss_pred cCc
Confidence 543
No 129
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=26.99 E-value=15 Score=30.20 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=6.3
Q ss_pred HHHHhcccceeeee
Q 008109 16 LSLCLLPESVLAIT 29 (577)
Q Consensus 16 ~~~~~~~~~~~~~~ 29 (577)
+++|+++..++++.
T Consensus 14 A~lLlisSevaa~~ 27 (95)
T PF07172_consen 14 AALLLISSEVAARE 27 (95)
T ss_pred HHHHHHHhhhhhHH
Confidence 34444454444443
No 130
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=26.91 E-value=2.6e+02 Score=27.06 Aligned_cols=75 Identities=16% Similarity=0.074 Sum_probs=49.2
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCCCCccccccCCCCeEEEEEEECCCceeeEEeccc-cccc-
Q 008109 60 PRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYIYNFTIVGQRGTLWWHAHI-SWLR- 137 (577)
Q Consensus 60 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~wYH~H~-~~~~- 137 (577)
..+.+..|..|++.+++.. .| |+..++. -|+ . .-.-||..-...+.+ +++|+|+--|.- -|..
T Consensus 140 n~lvlP~~~~v~~~~tS~D----Vi--Hsf~vP~----~~~---k-~daiPG~~~~~~~~~-~~~G~~~g~Cse~CG~~H 204 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD----VI--HSWTVPS----LGV---K-VDAVPGRLNQIGFTI-TRPGVFYGQCSEICGANH 204 (228)
T ss_pred ceEEEecCCEEEEEEEeCC----cc--ccccccc----cCc---c-eecCCCceEEEEEEe-CCCEEEEEEChhhcCcCc
Confidence 4678889999999999864 22 4554442 222 1 223478888888886 899999888764 2322
Q ss_pred ccceEeEEEeCC
Q 008109 138 STLYGPIIILPK 149 (577)
Q Consensus 138 ~Gl~G~liV~~~ 149 (577)
+-|.+.+.|.++
T Consensus 205 s~M~~~v~vv~~ 216 (228)
T MTH00008 205 SFMPIVLEAVDT 216 (228)
T ss_pred cCceeEEEEECH
Confidence 556666665554
No 131
>PF14481 Fimbrial_PilY2: Type 4 fimbrial biogenesis protein PilY2; PDB: 3TDQ_A.
Probab=26.80 E-value=7.6 Score=31.96 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=13.8
Q ss_pred CCeE-EEecCCEEEEE--EEeCCCCceeeeEcc
Q 008109 59 GPRI-VAREGDRLLIK--VVNHVQHNISIHWHG 88 (577)
Q Consensus 59 gP~i-~v~~Gd~v~v~--l~N~l~~~~~iH~HG 88 (577)
||.| .+++|..|-.- +.-.++.-++|.+|-
T Consensus 64 ~p~ifqvrpGsvVS~sGsvss~~p~I~si~i~r 96 (118)
T PF14481_consen 64 GPVIFQVRPGSVVSFSGSVSSPLPTITSIYILR 96 (118)
T ss_dssp EEGGGT--TT-EEEEEEE--SSS-EEEEEEE-H
T ss_pred CceEEEEcCCcEEEEeeeecCCCcccceEEEEe
Confidence 5888 89999986543 223334445555553
No 132
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=26.27 E-value=3.2e+02 Score=21.43 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=11.2
Q ss_pred EecCCEEEEEEEecC
Q 008109 217 VKSGKTYLLRLVNSA 231 (577)
Q Consensus 217 v~~G~~~rlRliN~~ 231 (577)
.+.|++++|++-..-
T Consensus 3 ~~~Ge~v~~~~~~~~ 17 (83)
T PF14326_consen 3 YRVGERVRFRVTSNR 17 (83)
T ss_pred ccCCCEEEEEEEeCC
Confidence 567888888887744
No 133
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=26.08 E-value=3.5e+02 Score=21.82 Aligned_cols=64 Identities=20% Similarity=0.344 Sum_probs=35.9
Q ss_pred EEecCCEE--EEEEEecCCCCcEEEEEcCce--eEEEEeCCcccCceEEeEEEECCCceEEEEEEeCCCCCCceEEE
Q 008109 216 KVKSGKTY--LLRLVNSALNDDLFFSIANHT--LTVVEVDAVYVKPFETETLVITPGQTTNVLLETKPHYPSATFFM 288 (577)
Q Consensus 216 ~v~~G~~~--rlRliN~~~~~~~~~~i~gh~--~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l 288 (577)
.+..|++| .+.|.|.|... ..|++...+ -..+. ++| ..-.|+||+..++.|.+....+-|.|.-
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p-~~f~v~~~~~~~~~~~-----v~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~ 82 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIP-ARFRVRQPESLSSFFS-----VEP---PSGFLAPGESVELEVTFSPTKPLGDYEG 82 (102)
T ss_pred EEccCCEEEEEEEEEECCCCC-EEEEEEeCCcCCCCEE-----EEC---CCCEECCCCEEEEEEEEEeCCCCceEEE
Confidence 44556655 48999999654 345543111 01111 112 2346999999999999883221265543
No 134
>PRK10449 heat-inducible protein; Provisional
Probab=26.04 E-value=83 Score=27.84 Aligned_cols=42 Identities=26% Similarity=0.139 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcccceeeeeEEEEEEEEEEEeccCceeeEEEEECCCC
Q 008109 9 GFVLLTVLSLCLLPESVLAITRHYKFNVELKNVTRLCHTKTLVSVNGQF 57 (577)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~ 57 (577)
++++++++++++++|...+.. ......+.++...+..+||+-
T Consensus 3 ~~~~~~~~~~~l~~C~~~~~~-------~~~~~~L~~~~W~L~~i~G~~ 44 (140)
T PRK10449 3 KVVALVALSLLMAGCVSSGKI-------SVTPEQLQHHRFVLESVNGKP 44 (140)
T ss_pred hHHHHHHHHHHHHHhcCCCCC-------CcCHHHcCCceEEEEEECCEE
Confidence 444445555555566554321 011224456666666777753
No 135
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=26.00 E-value=2.3e+02 Score=27.43 Aligned_cols=61 Identities=5% Similarity=0.101 Sum_probs=44.2
Q ss_pred EEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeeec
Q 008109 214 KLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARPY 293 (577)
Q Consensus 214 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 293 (577)
.+.+..|+.+|+++.+... .|.|.+.+...+ +..-||..-.+.+.++++ |.|+..|..+
T Consensus 141 ~lvlP~~~~v~~~~tS~DV--iHsf~vP~~~~k----------------~daiPG~~~~~~~~~~~~---G~~~g~Cse~ 199 (228)
T MTH00008 141 RAVLPMQTEIRVLVTAADV--IHSWTVPSLGVK----------------VDAVPGRLNQIGFTITRP---GVFYGQCSEI 199 (228)
T ss_pred eEEEecCCEEEEEEEeCCc--cccccccccCcc----------------eecCCCceEEEEEEeCCC---EEEEEEChhh
Confidence 5889999999999988553 334444433322 334478888888888888 9999999876
Q ss_pred cc
Q 008109 294 VT 295 (577)
Q Consensus 294 ~~ 295 (577)
++
T Consensus 200 CG 201 (228)
T MTH00008 200 CG 201 (228)
T ss_pred cC
Confidence 54
No 136
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=25.16 E-value=3.9e+02 Score=25.83 Aligned_cols=76 Identities=14% Similarity=0.334 Sum_probs=52.4
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCceeecCCceEEEEeccCcCCCCCCCCCCCCCCCCeeeeEEeCCCcEEEEEEEe
Q 008109 452 TKLVVLPFNTSVELIMQDTSILGAENHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPIERNTVGVPSGGWVAIRFLA 531 (577)
Q Consensus 452 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~~~v~irf~a 531 (577)
.+.+.++.|+.+++.+...+ ..| .|+|-+-| ...|. -||....+.|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D----ViH-------sf~ip~lg------------------~k~da---iPG~~~~~~~~~ 186 (227)
T MTH00098 139 DNRVVLPMEMPIRMLISSED----VLH-------SWAVPSLG------------------LKTDA---IPGRLNQTTLMS 186 (227)
T ss_pred cceEEecCCCEEEEEEEECc----ccc-------cccccccc------------------cceec---CCCceEEEEEec
Confidence 45678899999999998743 444 45443332 12343 378888889999
Q ss_pred cCceeEEEeeechhhh-hcccEEEEEEec
Q 008109 532 DNPGVWFMHCHLEVHT-SWGLKTAWLVLD 559 (577)
Q Consensus 532 dnpG~w~~HCHil~H~-d~GM~~~~~V~~ 559 (577)
+.||.+..-|.-+-.. +.-|-..++|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 187 TRPGLYYGQCSEICGSNHSFMPIVLELVP 215 (227)
T ss_pred CCcEEEEEECccccCcCcCCceEEEEEeC
Confidence 9999999999875544 345666666554
No 137
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=24.60 E-value=3.4e+02 Score=26.08 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=62.8
Q ss_pred eccCceeeEEEEECCCCCCCeEEEecCCEEEEEEEeCCCCc-----eeeeEcceeccCCCCCCCCCCccccccCCCCeEE
Q 008109 41 VTRLCHTKTLVSVNGQFPGPRIVAREGDRLLIKVVNHVQHN-----ISIHWHGIRQLRSGWADGPAYITQCPIQTGQSYI 115 (577)
Q Consensus 41 ~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~-----~~iH~HG~~~~~~~~~DGv~~~tq~~i~PG~~~~ 115 (577)
.+++|..--.+++.|.+---.|.|..|..+|+++.=+.+-+ .+--+|+.. .++-+|...
T Consensus 78 ~a~~g~qeIsitv~gGy~p~~IvV~~~v~~rl~f~Rkdpspcle~i~~pdfgiaa----------------nlpl~q~ss 141 (272)
T COG4633 78 FAPNGIQEISITVDGGYIPSRIVVVDGVPVRLTFKRKDPSPCLESIMSPDFGIAA----------------NLPLNQVSS 141 (272)
T ss_pred cccCCceEEEEEEeCCccceeEEEecCcceEeeeccCCCCcchhhcccccccccc----------------cCCcCceeE
Confidence 33455444445666666557899999999999999887533 233333332 345588888
Q ss_pred EEEEECCCceeeEEecccccccccceEeEEEeCCCCC
Q 008109 116 YNFTIVGQRGTLWWHAHISWLRSTLYGPIIILPKRGI 152 (577)
Q Consensus 116 Y~~~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~ 152 (577)
.+|+ +.++|.|-+-|-. .=|.|.+.|+.....
T Consensus 142 Ie~T-~~s~ge~af~cgm----nm~~G~~~vet~~~~ 173 (272)
T COG4633 142 IEFT-PISKGEYAFLCGM----NMFRGNIQVETLTGK 173 (272)
T ss_pred EEec-cccccchhhhcch----hhccCeeEEEecCCc
Confidence 8998 5899999888764 346788999887653
No 138
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.92 E-value=2.2e+02 Score=27.53 Aligned_cols=61 Identities=7% Similarity=0.114 Sum_probs=43.6
Q ss_pred EEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeeec
Q 008109 214 KLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARPY 293 (577)
Q Consensus 214 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 293 (577)
.+.+..|+.+|+++..... .|.|.+.+... .+..-||.+-.+.+.++++ |.|+..|..+
T Consensus 141 ~lvlP~~~~v~~~~tS~DV--iHsf~ip~~~~----------------k~da~PG~~~~~~~~~~~~---G~~~g~C~e~ 199 (230)
T MTH00129 141 RMVVPVESPIRVLVSAEDV--LHSWAVPALGV----------------KMDAVPGRLNQTAFIASRP---GVFYGQCSEI 199 (230)
T ss_pred eEEEecCcEEEEEEEeCcc--ccceeccccCC----------------ccccCCCceEEEEEEeCCc---eEEEEEChhh
Confidence 5888999999998876653 33344443321 2344589999999999888 9999999876
Q ss_pred cc
Q 008109 294 VT 295 (577)
Q Consensus 294 ~~ 295 (577)
++
T Consensus 200 CG 201 (230)
T MTH00129 200 CG 201 (230)
T ss_pred cc
Confidence 54
No 139
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=23.90 E-value=2.5e+02 Score=27.10 Aligned_cols=61 Identities=7% Similarity=0.107 Sum_probs=43.1
Q ss_pred EEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeeec
Q 008109 214 KLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARPY 293 (577)
Q Consensus 214 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 293 (577)
.+.+..|+.+||++...... |.|.+..... .+..-||..-.+.+.++++ |.|+..|..+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi--Hsf~ip~lg~----------------k~daiPG~~~~~~~~~~~~---G~~~g~Cse~ 199 (227)
T MTH00098 141 RVVLPMEMPIRMLISSEDVL--HSWAVPSLGL----------------KTDAIPGRLNQTTLMSTRP---GLYYGQCSEI 199 (227)
T ss_pred eEEecCCCEEEEEEEECccc--cccccccccc----------------ceecCCCceEEEEEecCCc---EEEEEECccc
Confidence 57889999999988766633 3344443322 2334478888888888888 9999999876
Q ss_pred cc
Q 008109 294 VT 295 (577)
Q Consensus 294 ~~ 295 (577)
++
T Consensus 200 CG 201 (227)
T MTH00098 200 CG 201 (227)
T ss_pred cC
Confidence 54
No 140
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.95 E-value=3.2e+02 Score=26.37 Aligned_cols=62 Identities=8% Similarity=0.142 Sum_probs=44.3
Q ss_pred EEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeeec
Q 008109 214 KLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARPY 293 (577)
Q Consensus 214 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 293 (577)
.+.+..|+.+|+++..+.. .|.|.+.....+ +..-||..-.+.++++++ |.|..+|..+
T Consensus 141 ~l~lP~~~~v~~~~tS~DV--iHsf~vp~l~~k----------------~davPG~~~~~~~~~~~~---G~y~g~Cse~ 199 (227)
T MTH00154 141 RLVLPMNTQIRILITAADV--IHSWTVPSLGVK----------------VDAVPGRLNQLNFLINRP---GLFFGQCSEI 199 (227)
T ss_pred eEEEecCCEEEEEEEcCch--hhheeccccCCe----------------eecCCCceEEEEEEEcCc---eEEEEEeech
Confidence 5889999999988876653 444555443222 333478888888888888 9999999876
Q ss_pred ccC
Q 008109 294 VTG 296 (577)
Q Consensus 294 ~~~ 296 (577)
++.
T Consensus 200 CG~ 202 (227)
T MTH00154 200 CGA 202 (227)
T ss_pred hCc
Confidence 543
No 141
>PRK13791 lysozyme inhibitor; Provisional
Probab=22.93 E-value=3.9e+02 Score=22.75 Aligned_cols=19 Identities=11% Similarity=0.130 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHhcccce
Q 008109 7 LMGFVLLTVLSLCLLPESV 25 (577)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (577)
.||.++++++++++..+..
T Consensus 3 ~mk~~~~~~~~~~ls~~~~ 21 (113)
T PRK13791 3 KRKLIPFTLFLAALSASTT 21 (113)
T ss_pred hHHHHHHHHHHHHHhhhhh
Confidence 5677666665555555444
No 142
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=21.35 E-value=3e+02 Score=26.61 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=14.0
Q ss_pred CCeEEEecCCEEEEEEEe
Q 008109 59 GPRIVAREGDRLLIKVVN 76 (577)
Q Consensus 59 gP~i~v~~Gd~v~v~l~N 76 (577)
.|..|+.+|+.-.||+.-
T Consensus 74 PPlfrl~p~~~q~lRI~~ 91 (229)
T PRK15211 74 PPFFKVRPKEKQIIRIMK 91 (229)
T ss_pred CCeEEECCCCceEEEEEE
Confidence 388899999887777654
No 143
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=20.92 E-value=4e+02 Score=26.01 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=15.0
Q ss_pred CCeEEEecCCEEEEEEEeC
Q 008109 59 GPRIVAREGDRLLIKVVNH 77 (577)
Q Consensus 59 gP~i~v~~Gd~v~v~l~N~ 77 (577)
.|..|+.+|+.-.||+...
T Consensus 89 PPlfRl~p~~~~~lRI~~~ 107 (242)
T PRK15253 89 PPVARVAAESGQQIKIKKM 107 (242)
T ss_pred CCeEEECCCCceEEEEEEC
Confidence 3889999999888887643
No 144
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=20.84 E-value=1.4e+02 Score=28.93 Aligned_cols=14 Identities=36% Similarity=0.195 Sum_probs=12.9
Q ss_pred CeEEEecCCEEEEE
Q 008109 60 PRIVAREGDRLLIK 73 (577)
Q Consensus 60 P~i~v~~Gd~v~v~ 73 (577)
.+|.|+-||.|.|.
T Consensus 43 ~vI~v~igD~ldIi 56 (233)
T KOG3858|consen 43 YVIYVQIGDYLDII 56 (233)
T ss_pred ceEEeccCCEEEEE
Confidence 89999999998886
No 145
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=20.64 E-value=3e+02 Score=21.78 Aligned_cols=62 Identities=15% Similarity=0.243 Sum_probs=33.5
Q ss_pred EEEecCCEEEEEEEeCCCCceeeeEcc----eeccCCCC-CCCCCCccccccCCCCeEEEEEEECCCceee
Q 008109 62 IVAREGDRLLIKVVNHVQHNISIHWHG----IRQLRSGW-ADGPAYITQCPIQTGQSYIYNFTIVGQRGTL 127 (577)
Q Consensus 62 i~v~~Gd~v~v~l~N~l~~~~~iH~HG----~~~~~~~~-~DGv~~~tq~~i~PG~~~~Y~~~~~~~~Gt~ 127 (577)
|.++.||++.|.|.-+-.....=+... +......+ .+..+ ...+.-|....+.|++ ..+|+.
T Consensus 1 I~v~~g~~~~I~L~~npstGY~W~~~~~~~~l~l~~~~~~~~~~~---~~~vG~~g~~~f~f~a-~~~G~~ 67 (92)
T PF09394_consen 1 ITVKVGDTFEIELPENPSTGYSWSLSSDSDGLQLVSEEYIPDNSP---SGLVGAPGTRTFTFKA-LKPGTT 67 (92)
T ss_dssp -EEETTSEEEEEEEEBCCGTBEEEECTSTTTEEEEEEEEEESSTS---STSSTSSEEEEEEEEE-SSSEEE
T ss_pred CeecCCCEEEEEECCCCCCCeEEEEecCCCeEEEcCCcEEeCCCC---cCCCCCCcEEEEEEEE-ecCeeE
Confidence 678999999999998875444433333 11100000 00000 0034456677888887 667754
No 146
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.61 E-value=3.1e+02 Score=26.65 Aligned_cols=61 Identities=11% Similarity=0.159 Sum_probs=43.7
Q ss_pred EEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeeec
Q 008109 214 KLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARPY 293 (577)
Q Consensus 214 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 293 (577)
.+.+..|+.+|+++.++.. .|.|.+.+...+ +..-||..-.+.+.++.+ |.|...|..+
T Consensus 145 ~lvlP~~~~v~~~itS~DV--iHsf~vp~lg~k----------------~daiPG~~~~~~~~~~~~---G~y~g~Cse~ 203 (234)
T MTH00051 145 RLIVPIQTQVRVLVTAADV--LHSFAVPSLSVK----------------IDAVPGRLNQTSFFIKRP---GVFYGQCSEI 203 (234)
T ss_pred EEEEecCcEEEEEEEeCch--hccccccccCce----------------eEccCCceEeEEEEeCCC---EEEEEEChhh
Confidence 5889999999999988753 334444433222 334478888888888888 9999999876
Q ss_pred cc
Q 008109 294 VT 295 (577)
Q Consensus 294 ~~ 295 (577)
++
T Consensus 204 CG 205 (234)
T MTH00051 204 CG 205 (234)
T ss_pred cC
Confidence 54
No 147
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=20.53 E-value=2.3e+02 Score=23.49 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=39.4
Q ss_pred eEEEecC-CEEEEEEEeCCCCc--eeeeEcceeccCCCCCCC---------CCCccccccCCCCeEEEEEE
Q 008109 61 RIVAREG-DRLLIKVVNHVQHN--ISIHWHGIRQLRSGWADG---------PAYITQCPIQTGQSYIYNFT 119 (577)
Q Consensus 61 ~i~v~~G-d~v~v~l~N~l~~~--~~iH~HG~~~~~~~~~DG---------v~~~tq~~i~PG~~~~Y~~~ 119 (577)
.|++++| ++++|.|+|.-+.+ ..-|+|=..+...-..|= .|.-|..-..||++.+-+.-
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred CEEeCCCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 4888888 79999999999765 456888777655433332 23223345677777776664
No 148
>PRK04517 hypothetical protein; Provisional
Probab=20.50 E-value=3.3e+02 Score=26.10 Aligned_cols=27 Identities=22% Similarity=0.537 Sum_probs=14.1
Q ss_pred eEEEEECCCCC---C------CeEEEecCC-EEEEEE
Q 008109 48 KTLVSVNGQFP---G------PRIVAREGD-RLLIKV 74 (577)
Q Consensus 48 ~~~~~~ng~~p---g------P~i~v~~Gd-~v~v~l 74 (577)
..+..+||+-+ | -.|.+..|+ .|.+|+
T Consensus 31 i~lL~vnG~k~~~s~~l~~~~~~l~L~~G~nQIvfry 67 (216)
T PRK04517 31 VDLLVANGSKPKLSGGFFASTKTLELPDGENQIVFRY 67 (216)
T ss_pred eEEEEECCEecccccccccCCceeEeCCCceEEEEEE
Confidence 34555666642 1 347777775 344443
No 149
>PRK13203 ureB urease subunit beta; Reviewed
Probab=20.45 E-value=2.2e+02 Score=23.57 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=39.2
Q ss_pred eEEEecC-CEEEEEEEeCCCCc--eeeeEcceeccCCCCCCC---------CCCccccccCCCCeEEEEEE
Q 008109 61 RIVAREG-DRLLIKVVNHVQHN--ISIHWHGIRQLRSGWADG---------PAYITQCPIQTGQSYIYNFT 119 (577)
Q Consensus 61 ~i~v~~G-d~v~v~l~N~l~~~--~~iH~HG~~~~~~~~~DG---------v~~~tq~~i~PG~~~~Y~~~ 119 (577)
.|++++| ++++|+|+|.-+.+ ..-|+|=..+...-..|= .|.-|..-..||++.+-+.-
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 12 EIELNAGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CEEeCCCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 4888888 79999999999665 456888777655433332 23223345667777776664
No 150
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.43 E-value=3.5e+02 Score=26.14 Aligned_cols=62 Identities=5% Similarity=0.102 Sum_probs=43.4
Q ss_pred EEEEecCCEEEEEEEecCCCCcEEEEEcCceeEEEEeCCcccCceEEeEEEECCCceEEEEEEeCCCCCCceEEEEeeec
Q 008109 214 KLKVKSGKTYLLRLVNSALNDDLFFSIANHTLTVVEVDAVYVKPFETETLVITPGQTTNVLLETKPHYPSATFFMTARPY 293 (577)
Q Consensus 214 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~d~l~l~pgeR~dv~v~~~~~~~~g~y~l~~~~~ 293 (577)
.+.+..|+.+|+++..... .|.|.+.+... .+..-||..-.+.+.++++ |.|..+|..+
T Consensus 141 ~lvlP~~~~v~~~~tS~DV--iHsf~iP~lg~----------------k~daiPG~~~~~~~~~~~~---G~~~g~Cse~ 199 (230)
T MTH00185 141 RMVVPMESPIRVLITAEDV--LHSWTVPALGV----------------KMDAVPGRLNQATFIISRP---GLYYGQCSEI 199 (230)
T ss_pred eEEEecCCEEEEEEEcCcc--cccccccccCc----------------eeEecCCceEEEEEEeCCc---EEEEEEchhh
Confidence 5889999999988876653 33444443322 2334478888888888888 9999999876
Q ss_pred ccC
Q 008109 294 VTG 296 (577)
Q Consensus 294 ~~~ 296 (577)
++.
T Consensus 200 CG~ 202 (230)
T MTH00185 200 CGA 202 (230)
T ss_pred cCc
Confidence 543
No 151
>PRK03641 hypothetical protein; Provisional
Probab=20.39 E-value=1.7e+02 Score=28.03 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=11.7
Q ss_pred eEEEEECCCCCC-------CeEEEecCC
Q 008109 48 KTLVSVNGQFPG-------PRIVAREGD 68 (577)
Q Consensus 48 ~~~~~~ng~~pg-------P~i~v~~Gd 68 (577)
..+..+||+-+. -.|.+..|+
T Consensus 29 i~lL~vnG~kv~~sll~~~~~l~L~~G~ 56 (220)
T PRK03641 29 IDLLVLDGKKVSGSLLRGADSLELDNGP 56 (220)
T ss_pred eeEEEECCEEccccccCCCceEEeCCCc
Confidence 345566665431 357777776
No 152
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.35 E-value=97 Score=27.07 Aligned_cols=24 Identities=25% Similarity=0.123 Sum_probs=18.1
Q ss_pred cchHHHHHHHHHHHHhcccceeee
Q 008109 5 PALMGFVLLTVLSLCLLPESVLAI 28 (577)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (577)
++-|+.+|+.+++++++++++++.
T Consensus 1 m~~~r~ll~~fL~l~~~slaqa~~ 24 (155)
T COG3915 1 MRTMRVLLLTFLALISSSLAQAEP 24 (155)
T ss_pred CchHHHHHHHHHHHHhhHHhhcCc
Confidence 355788887888888887777766
No 153
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.13 E-value=1.1e+02 Score=27.33 Aligned_cols=69 Identities=10% Similarity=0.162 Sum_probs=38.0
Q ss_pred eeeEEEEEEEEEEEeccCceeeEEEEECCCC-CCCeEEEecCCEEEEEEEeCCCCceeeeEcceeccCCCCCCCC
Q 008109 27 AITRHYKFNVELKNVTRLCHTKTLVSVNGQF-PGPRIVAREGDRLLIKVVNHVQHNISIHWHGIRQLRSGWADGP 100 (577)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~-pgP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv 100 (577)
.....|-++.++...... ...+.+-+.|.+ +|. |+-..|..++++|+-. .....++..|.. +..+.+|.
T Consensus 31 ~~~~~yf~tpse~~~~~~-~~g~~vrvgG~V~~gS-i~~~~~~~~~F~ltD~-~~~i~V~Y~G~l--Pd~F~eg~ 100 (148)
T PRK13254 31 RQNIVFFYTPSEVAEGEA-PAGRRFRLGGLVEKGS-VQRGDGLTVRFVVTDG-NATVPVVYTGIL--PDLFREGQ 100 (148)
T ss_pred HhCCceeeCHHHHhcCCc-cCCCeEEEeEEEecCc-EEeCCCCEEEEEEEeC-CeEEEEEECCCC--CccccCCC
Confidence 444557777666543322 122233344444 343 3333778888888776 566778888863 33445654
No 154
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=20.02 E-value=3.5e+02 Score=23.09 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=18.6
Q ss_pred EEecCCEEEEEEEeCCCCceeeeE
Q 008109 63 VAREGDRLLIKVVNHVQHNISIHW 86 (577)
Q Consensus 63 ~v~~Gd~v~v~l~N~l~~~~~iH~ 86 (577)
.+++||+|+++|+......+.++.
T Consensus 88 ~lk~G~~V~F~~~~~~~~~~i~~i 111 (115)
T PRK09838 88 EIKTGDKVAFNFVQQGNLSLLQDI 111 (115)
T ss_pred cCCCCCEEEEEEEEcCCcEEEEEE
Confidence 479999999999988766655443
Done!