BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008110
         (577 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
 pdb|1CT9|B Chain B, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
 pdb|1CT9|C Chain C, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
 pdb|1CT9|D Chain D, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
          Length = 553

 Score = 32.7 bits (73), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 376 VLMRVTFPAPSLRIKATERFEAIYPILKE--VALAGSPGSKAMKQVAQHILTI 426
           ++  +T    + R++  ER EA +P L    V L GSP  KA ++VA H+ T+
Sbjct: 241 IISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTV 293


>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
           Homolog Protein Deacetylase From Eschericia Coli
          Length = 235

 Score = 30.8 bits (68), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 9/76 (11%)

Query: 469 EASIVVLRKLSDEWKEHSVKD---PKG-DRLRETLSSFKQKNEKELKKAE---DATRIAL 521
           E+ I   R     W+EH V+D   P+G DR  E + +F     ++L++ E   +A  +AL
Sbjct: 15  ESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLAL 74

Query: 522 --LKDADKRRKLILRK 535
             L+DA   R L++ +
Sbjct: 75  AKLQDALGDRFLLVTQ 90


>pdb|2Q04|A Chain A, Crystal Structure Of Acetoin Utilization Protein
           (Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
           2.33 A Resolution
 pdb|2Q04|B Chain B, Crystal Structure Of Acetoin Utilization Protein
           (Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
           2.33 A Resolution
 pdb|2Q04|C Chain C, Crystal Structure Of Acetoin Utilization Protein
           (Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
           2.33 A Resolution
 pdb|2Q04|D Chain D, Crystal Structure Of Acetoin Utilization Protein
           (Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
           2.33 A Resolution
 pdb|2Q04|E Chain E, Crystal Structure Of Acetoin Utilization Protein
           (Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
           2.33 A Resolution
 pdb|2Q04|F Chain F, Crystal Structure Of Acetoin Utilization Protein
           (Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
           2.33 A Resolution
          Length = 211

 Score = 29.3 bits (64), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 411 PGSKAMKQVA-QHILTIAIKAAGEGIPDLSREASDIFIWALTQNPECYKQW 460
           PG  A +Q A QH   + I A  EG   ++R+ +DI  +     P+ Y+ W
Sbjct: 37  PGLTAFRQPAEQHEALVEIAALEEGRIIIARQGNDIIGYVTFLYPDPYETW 87


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,359,884
Number of Sequences: 62578
Number of extensions: 516351
Number of successful extensions: 1188
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1186
Number of HSP's gapped (non-prelim): 7
length of query: 577
length of database: 14,973,337
effective HSP length: 104
effective length of query: 473
effective length of database: 8,465,225
effective search space: 4004051425
effective search space used: 4004051425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)