BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008110
(577 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0JMW6|T214A_XENLA Transmembrane protein 214-A OS=Xenopus laevis GN=tmem214-a PE=2
SV=1
Length = 681
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 125/302 (41%), Gaps = 32/302 (10%)
Query: 264 VVLAMVLRRKPDVLISLLPIKRENPKYQGQDKLPVTA--WIIAQTAQGDLAVGLYMWVRV 321
+ L VL KP + + LP E + Q + A W + Q DL+ GL +W+ +
Sbjct: 214 ICLQAVLLDKPKTVTNNLPKYLELLRSQVNRPMKCLAVMWAVGQAGFTDLSEGLKVWLGL 273
Query: 322 LLPMLSGKSSCNPQARDSILQLVERILSLPKARTILINGAVKKGERLVPPSALEVLMRVT 381
+ P+L G + P A IL L R +L + + KG ++ P L+
Sbjct: 274 MFPVL-GVKTLTPYA---ILYL---------DRLLLAHSNLTKGFGMIGPKDFFPLLDFA 320
Query: 382 F-PAPSLRIKATERFEAIYPILKEVALAGSPGSKAMKQVAQHILTIAIKAAGEGIPDLSR 440
F P SL E +YP LK +A +P S + + E +L
Sbjct: 321 FMPNNSLTSSQQENLRNLYPRLKVLAFGATPESTLHTYFPSFLSRVTPSCPAEMRKELIN 380
Query: 441 EASDIFIWALTQNPECYKQWDMLYLDNLEASIVVLRKLSDEWKEHSVKDPKGDRLRETLS 500
+D L ++P + W LY +L S +L+ L + W +S K +RET+
Sbjct: 381 SLTD----CLNKDPLSFSVWRQLYTKHLSQSSFLLQHLVETWDSNSKAMRKS--VRETVH 434
Query: 501 SFKQKNEKELKKAEDATRIALLKD---ADKRRKLILRKLSQGRGFMKHMVIVSAAVAVGA 557
SFK N E + + + LKD D + +L K+ +G GF +IV A V +
Sbjct: 435 SFKVTN------GEFSGKGSSLKDLEACDAACQALLHKM-KGSGFPWRRLIVIAFVFLFG 487
Query: 558 VV 559
V
Sbjct: 488 FV 489
>sp|A1L2I9|T214B_XENLA Transmembrane protein 214-B OS=Xenopus laevis GN=tmem214-b PE=2
SV=1
Length = 679
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 117/299 (39%), Gaps = 25/299 (8%)
Query: 264 VVLAMVLRRKPDVLISLLPIKRE--NPKYQGQDKLPVTAWIIAQTAQGDLAVGLYMWVRV 321
+ + VL KP + S LP E K W + Q D GL +W+ +
Sbjct: 212 ICIQAVLLDKPKTVTSNLPKYLELLRSHLNRPMKCLTVMWAVGQAGFTDFTEGLKVWLGL 271
Query: 322 LLPMLSGKSSCNPQARDSILQLVERILSLPKARTILINGAVKKGERLVPPSALEVLMRVT 381
+ P+L G + P A IL L R +L + + KG ++ P ++
Sbjct: 272 MFPVL-GVKNLTPYA---ILYL---------DRLLLAHSNLTKGFGMIGPKDFFPILDFA 318
Query: 382 F-PAPSLRIKATERFEAIYPILKEVALAGSPGSKAMKQVAQHILTIAIKAAGEGIPDLSR 440
F P SL E +YP LK +AL +P S + E +L
Sbjct: 319 FMPNNSLTPSQQENLRNLYPKLKVLALGATPESTLHTYFPSFLSRATPSCPAEMRKELIH 378
Query: 441 EASDIFIWALTQNPECYKQWDMLYLDNLEASIVVLRKLSDEWKEHSVKDPKGDRLRETLS 500
+D L ++ + W LY +L S ++L+ L + W +S K +RET+
Sbjct: 379 SLTD----CLNKDSLSFSVWRQLYTKHLSQSSLLLQHLVETWDSNSRAMRKS--VRETVH 432
Query: 501 SFKQKNEKELKKAEDATRIALLKDADKRRKLILRKLSQGRGFMKHMVIVSAAVAVGAVV 559
SFK N + K + L+ D + +L K+ G +++++ G+V+
Sbjct: 433 SFKVTNGEFSGKGSSSKD---LEACDAACQALLHKMKSGGFPWWRLIVIAFVFLFGSVL 488
>sp|A4FV45|TM214_BOVIN Transmembrane protein 214 OS=Bos taurus GN=TMEM214 PE=2 SV=1
Length = 687
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 111/264 (42%), Gaps = 30/264 (11%)
Query: 301 WIIAQTAQGDLAVGLYMWVRVLLPMLSGKSSCNPQARDSILQLVERILSLPKARTILING 360
W + Q +L GL +W+ ++LP+L G S +P A + ++R+L L++
Sbjct: 258 WALGQAGFTNLTEGLRVWLGIMLPVL-GIKSLSPFA----IAYLDRLL--------LMHP 304
Query: 361 AVKKGERLVPPSALEVLMRVTF-PAPSLRIKATERFEAIYPILKEVALAGSPGSKAMKQV 419
+ KG ++ P L L+ + P SL E+ +YP LK +A P S
Sbjct: 305 NLTKGFGMIGPKDLFPLLDFAYMPNNSLTPSLQEQLCQLYPRLKVLAFGAKPESTLHTYF 364
Query: 420 AQHILTIAIKAAGEGIP-DLSREASDIFIWALTQNPECYKQWDMLYLDNLEASIVVLRKL 478
+ A G P ++ +E L +P W LY +L S ++L L
Sbjct: 365 PSF-----LSRATPGCPLEMKKELLRSLTECLMVDPLSTSVWRQLYPKHLSQSSLLLEHL 419
Query: 479 SDEWKEHSVKDPKGDRLRETLSSFKQKNEKELKKAEDATRIALLKDADKRRKLILRKLSQ 538
W+ K K L+ET+ SFK N+ L+K + + + D+ + L Q
Sbjct: 420 LRSWERIPKKTQKS--LQETIQSFKLTNQDLLRKGGGSNQDVVTCDSACK-----SLLQQ 472
Query: 539 GRGFM---KHMVIVSAAVAVGAVV 559
RGF ++++ A+G +
Sbjct: 473 ARGFQLPWTRLLLLVLVFAIGFLC 496
>sp|Q8BM55|TM214_MOUSE Transmembrane protein 214 OS=Mus musculus GN=Tmem214 PE=2 SV=1
Length = 687
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 111/269 (41%), Gaps = 32/269 (11%)
Query: 264 VVLAMVLRRKPDVLIS-------LLPIKRENPKYQGQDKLPVTAWIIAQTAQGDLAVGLY 316
+ + VL+ KP ++ S LL + P K W + Q +L GL
Sbjct: 221 ICIQAVLQDKPKIVTSNLDKFLELLRSHQSRPA-----KCLTIMWALGQAGFTNLTEGLK 275
Query: 317 MWVRVLLPMLSGKSSCNPQARDSILQLVERILSLPKARTILINGAVKKGERLVPPSALEV 376
+W+ ++LP+L G + +P A + ++R+L L++ + KG ++ P
Sbjct: 276 VWLGIMLPVL-GIKALSPFA----IAYLDRLL--------LMHPNLTKGFGMIGPKDFFP 322
Query: 377 LMRVTF-PAPSLRIKATERFEAIYPILKEVALAGSPGSKAMKQVAQHILTIAIKAAGEGI 435
L+ + P SL E+ ++P LK +A P S + + + +A
Sbjct: 323 LLDFAYMPNNSLSPSLQEQLCQLFPRLKVLAFGAKPESS----LHTYFPSFLSRATPSCP 378
Query: 436 PDLSREASDIFIWALTQNPECYKQWDMLYLDNLEASIVVLRKLSDEWKEHSVKDPKGDRL 495
+ +E LT +P W LY +L S ++L L W EH K + L
Sbjct: 379 AAMKKELLASLTQCLTVDPLSTSVWRQLYPKHLSQSSLLLEHLLKSW-EHIPKKAR-KSL 436
Query: 496 RETLSSFKQKNEKELKKAEDATRIALLKD 524
+ET+ S K N++ LKK + L D
Sbjct: 437 QETIQSLKVTNQELLKKGSGGSEHVLTCD 465
>sp|A1L1L2|TM214_RAT Transmembrane protein 214 OS=Rattus norvegicus GN=Tmem214 PE=2 SV=1
Length = 685
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 101/244 (41%), Gaps = 29/244 (11%)
Query: 301 WIIAQTAQGDLAVGLYMWVRVLLPMLSGKSSCNPQARDSILQLVERILSLPKARTILING 360
W + Q +L GL +W+ ++LP+L G S +P A + ++R+L L+
Sbjct: 258 WALGQAGFTNLTEGLKVWLGIMLPVL-GIKSLSPFA----IAYLDRLL--------LMYP 304
Query: 361 AVKKGERLVPPSALEVLMRVTF-PAPSLRIKATERFEAIYPILKEVALAGSPGSKAMKQV 419
+ KG ++ P L+ + P SL E+ ++P LK +A P S +
Sbjct: 305 NLTKGFGMIGPKDFFPLLDFAYMPNNSLSPSLQEQLCQLFPRLKVLAFGAKPESS----L 360
Query: 420 AQHILTIAIKAAGEGIPDLSREASDIFIWALTQNPECYKQWDMLYLDNLEASIVVLRKLS 479
+ + +A + +E LT +P W LY +L S ++L L
Sbjct: 361 HTYFPSFLSRATPSCPAAMKKELLASLTQCLTVDPLSTSVWRQLYPKHLSQSSLLLEHLL 420
Query: 480 DEWKEHSVKDPKGDR--LRETLSSFKQKNEKELKKAEDATRIALLKDADKRRKLILRKLS 537
W++ PK R L+ET+ SF N++ LKK + + D + L
Sbjct: 421 TSWEQ----IPKKARKCLQETIQSFTLTNQELLKKGSGSNEHVVTCDTACK-----GLLQ 471
Query: 538 QGRG 541
Q RG
Sbjct: 472 QARG 475
>sp|Q6NUQ4|TM214_HUMAN Transmembrane protein 214 OS=Homo sapiens GN=TMEM214 PE=1 SV=2
Length = 689
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 20/214 (9%)
Query: 301 WIIAQTAQGDLAVGLYMWVRVLLPMLSGKSSCNPQARDSILQLVERILSLPKARTILING 360
W + Q +L GL +W+ ++LP+L G S +P A + ++R+L L++
Sbjct: 260 WALGQAGFANLTEGLKVWLGIMLPVL-GIKSLSPFA----ITYLDRLL--------LMHP 306
Query: 361 AVKKGERLVPPSALEVLMRVTF-PAPSLRIKATERFEAIYPILKEVALAGSPGSKAMKQV 419
+ KG ++ P L+ + P SL E+ +YP LK +A P S +
Sbjct: 307 NLTKGFGMIGPKDFFPLLDFAYMPNNSLTPSLQEQLCQLYPRLKVLAFGAKPDST----L 362
Query: 420 AQHILTIAIKAAGEGIPDLSREASDIFIWALTQNPECYKQWDMLYLDNLEASIVVLRKLS 479
+ + +A P++ +E LT +P W LY +L S ++L L
Sbjct: 363 HTYFPSFLSRATPSCPPEMKKELLSSLTECLTVDPLSASVWRQLYPKHLSQSSLLLEHLL 422
Query: 480 DEWKEHSVKDPKGDRLRETLSSFKQKNEKELKKA 513
W++ K K L+ET+ S K N++ L+K
Sbjct: 423 SSWEQIPKKVQKS--LQETIQSLKLTNQELLRKG 454
>sp|P48563|MON2_YEAST Protein MON2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=MON2 PE=1 SV=1
Length = 1636
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 66/155 (42%), Gaps = 9/155 (5%)
Query: 422 HILTIAIKAAGEGIPDLSREASDIFIWALTQNPECYKQWDMLYLDNLEASIVVLRKLSDE 481
++L I + ++ A F + + C+ WD+++L+ +E L+ E
Sbjct: 1029 YLLKNLINCTNDDRVEVKNGAVQTFFRIIDSHSVCFPPWDLIFLEVIEP------LLTKE 1082
Query: 482 WKEHSVKDPKGDRLRETLSSFKQKNEKELKKAEDATRIALLKDADKRRKLILRKLSQGRG 541
W +++ + D + TL + + K ++ T A K+ + R LS
Sbjct: 1083 WSTEELEN-ETDFINVTLQGLIKLYPEHFKDFKNNTTCA--KEWSMLLDFLKRLLSSTSN 1139
Query: 542 FMKHMVIVSAAVAVGAVVVSQNMQSWDIKKVLEIF 576
K+ VI++ + ++ +++ S +KK EIF
Sbjct: 1140 NTKNAVILNYQTLLKEIITIEDVPSDILKKCCEIF 1174
>sp|Q5N4B8|RNH2_SYNP6 Ribonuclease HII OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301
/ SAUG 1402/1) GN=rnhB PE=3 SV=1
Length = 215
Score = 33.5 bits (75), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 9/181 (4%)
Query: 360 GAVKKGERLVPPSALEVLMRVTFPAPSLRIKATERFEAIYPILKEVALAGSPGSKAMKQV 419
G V ++P +A+ L + S R+ +R + +YP++ EVALA G ++ ++
Sbjct: 34 GPVVTAAVILPETAIAPLQQAGV-TDSKRLSQRQR-QQLYPLICEVALATGWGLASVAEI 91
Query: 420 AQ-HILTIAIKAAGEGIPDLSREASDIFIWALTQNPE-CYKQWDMLYLDNLEASIVVLRK 477
+ +IL A I L R S I Q P+ Y Q ++ D +I
Sbjct: 92 ERWNILQATFLAMRRAIAKLDRPISRCLIDGNQQVPQLTYPQTTVIQGDRHCITIAAASI 151
Query: 478 LSDEWKEHSVKDPKGDRLRETLSSFKQKNEKELKKAEDATRIALLKDADKRRKLILRKLS 537
L+ W++ + +RL E + K A+ I L R LR L
Sbjct: 152 LAKVWRDRLI-----ERLDERYPGYALGRHKGYGTAQHRQAILQLGPTPLHRIRFLRSLR 206
Query: 538 Q 538
Q
Sbjct: 207 Q 207
>sp|Q31PW0|RNH2_SYNE7 Ribonuclease HII OS=Synechococcus elongatus (strain PCC 7942)
GN=rnhB PE=3 SV=1
Length = 215
Score = 33.5 bits (75), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 9/181 (4%)
Query: 360 GAVKKGERLVPPSALEVLMRVTFPAPSLRIKATERFEAIYPILKEVALAGSPGSKAMKQV 419
G V ++P +A+ L + S R+ +R + +YP++ EVALA G ++ ++
Sbjct: 34 GPVVTAAVILPETAIAPLQQAGV-TDSKRLSQRQR-QQLYPLICEVALATGWGLASVAEI 91
Query: 420 AQ-HILTIAIKAAGEGIPDLSREASDIFIWALTQNPE-CYKQWDMLYLDNLEASIVVLRK 477
+ +IL A I L R S I Q P+ Y Q ++ D +I
Sbjct: 92 ERWNILQATFLAMRRAIAKLDRPISRCLIDGNQQVPQLTYPQTTVIQGDRHCITIAAASI 151
Query: 478 LSDEWKEHSVKDPKGDRLRETLSSFKQKNEKELKKAEDATRIALLKDADKRRKLILRKLS 537
L+ W++ + +RL E + K A+ I L R LR L
Sbjct: 152 LAKVWRDRLI-----ERLDERYPGYALGRHKGYGTAQHRQAILQLGPTPLHRIRFLRSLR 206
Query: 538 Q 538
Q
Sbjct: 207 Q 207
>sp|Q4A6S2|SECA_MYCS5 Protein translocase subunit SecA OS=Mycoplasma synoviae (strain 53)
GN=secA PE=3 SV=2
Length = 1093
Score = 33.1 bits (74), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 14/62 (22%)
Query: 455 ECYKQW--------DMLYLDNLEASIVVLRKLSDEWKEHSVKDPKGDRLRE--TLSSFKQ 504
+ Y QW D Y+DN + V+L+ L D WK+H K D+LR L + Q
Sbjct: 692 DIYNQWLANAIEKTDQAYIDNFKKQ-VLLKTLDDNWKKHI---NKMDKLRSNVNLVQYSQ 747
Query: 505 KN 506
KN
Sbjct: 748 KN 749
>sp|Q12113|YO21B_YEAST Transposon Ty2-OR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-OR1 PE=3 SV=1
Length = 1770
Score = 32.7 bits (73), Expect = 9.1, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 48 DNSLPDRRPDDGATTSDVFRAIEE-HSEERRRRMSVPQVATPVTGEGSKRHSDEDDDSDA 106
D LPD TSDV + I HS + + + +T SK+ S ED++++
Sbjct: 1145 DLPLPDLTHQSPTDTSDVSKDIPHIHSRQTNSSLGGMDDSNVLTTTKSKKRSLEDNETEI 1204
Query: 107 EVSAAVVEVKKVKQKKPKKPKVTVSEAAA 135
EVS K ++ +P + K ++ AA
Sbjct: 1205 EVSRDTWNNKNMRSLEPPRSKKRINLIAA 1233
>sp|P25384|YC21B_YEAST Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-C PE=1 SV=2
Length = 1770
Score = 32.3 bits (72), Expect = 9.3, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 48 DNSLPDRRPDDGATTSDVFRAIEE-HSEERRRRMSVPQVATPVTGEGSKRHSDEDDDSDA 106
D LPD TSDV + I HS + + + +T SK+ S ED++++
Sbjct: 1145 DLPLPDLTHQSPTDTSDVSKDIPHIHSRQTNSSLGGMDDSNVLTTTKSKKRSLEDNETEI 1204
Query: 107 EVSAAVVEVKKVKQKKPKKPKVTVSEAAA 135
EVS K ++ +P + K ++ AA
Sbjct: 1205 EVSRDTWNNKNMRSLEPPRSKKRINLIAA 1233
>sp|Q07791|YD23B_YEAST Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-DR3 PE=3 SV=1
Length = 1770
Score = 32.3 bits (72), Expect = 9.8, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 48 DNSLPDRRPDDGATTSDVFRAIEE-HSEERRRRMSVPQVATPVTGEGSKRHSDEDDDSDA 106
D LPD TSDV + I HS + + + +T SK+ S ED++++
Sbjct: 1145 DLPLPDLTNKSPTDTSDVSKDIPHIHSRQTNSSLGGMDDSNVLTTTKSKKRSLEDNETEI 1204
Query: 107 EVSAAVVEVKKVKQKKPKKPKVTVSEAAA 135
EVS K ++ +P + K ++ AA
Sbjct: 1205 EVSRDTWNNKNMRSLEPPRSKKRINLIAA 1233
>sp|Q12472|YD21B_YEAST Transposon Ty2-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-DR1 PE=1 SV=3
Length = 1770
Score = 32.3 bits (72), Expect = 9.8, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 48 DNSLPDRRPDDGATTSDVFRAIEE-HSEERRRRMSVPQVATPVTGEGSKRHSDEDDDSDA 106
D LPD TSDV + I HS + + + +T SK+ S ED++++
Sbjct: 1145 DLPLPDLTNKSPTDTSDVSKDIPHIHSRQTNSSLGGMDDSNVLTTTKSKKRSLEDNETEI 1204
Query: 107 EVSAAVVEVKKVKQKKPKKPKVTVSEAAA 135
EVS K ++ +P + K ++ AA
Sbjct: 1205 EVSRDTWNNKNMRSLEPPRSKKRINLIAA 1233
>sp|Q12491|YB21B_YEAST Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-B PE=1 SV=1
Length = 1770
Score = 32.3 bits (72), Expect = 9.8, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 48 DNSLPDRRPDDGATTSDVFRAIEE-HSEERRRRMSVPQVATPVTGEGSKRHSDEDDDSDA 106
D LPD TSDV + I HS + + + +T SK+ S ED++++
Sbjct: 1145 DLPLPDLTNKSPTDTSDVSKDIPHIHSRQTNSSLGGMDDSNVLTTTKSKKRSLEDNETEI 1204
Query: 107 EVSAAVVEVKKVKQKKPKKPKVTVSEAAA 135
EVS K ++ +P + K ++ AA
Sbjct: 1205 EVSRDTWNNKNMRSLEPPRSKKRINLIAA 1233
>sp|P27206|SRFAA_BACSU Surfactin synthase subunit 1 OS=Bacillus subtilis (strain 168)
GN=srfAA PE=1 SV=4
Length = 3587
Score = 32.3 bits (72), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 432 GEGIPDLSREASDIFIWALTQNPECYKQWDMLYLDNLEASIVVLRKLSDEWKEHSVKDPK 491
GE +PDL + D +W Q E YK+ + + + VL+ LSD + V+ +
Sbjct: 1208 GEQLPDLRLQYKDYAVWQSRQAAEGYKKDQAYWKEVFAGELPVLQLLSD-YPRPPVQSFE 1266
Query: 492 GDR--------LRETLSSFKQKNEKELKKAEDATRIALLKDADKRRKLILRKLSQGR 540
GDR +++ L+ ++N L + LL + +I+ S GR
Sbjct: 1267 GDRVSIKLDAGVKDRLNRLAEQNGATLYMVMLSAYYTLLSKYTGQDDIIVGTPSAGR 1323
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,990,526
Number of Sequences: 539616
Number of extensions: 8339688
Number of successful extensions: 31227
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 31028
Number of HSP's gapped (non-prelim): 269
length of query: 577
length of database: 191,569,459
effective HSP length: 123
effective length of query: 454
effective length of database: 125,196,691
effective search space: 56839297714
effective search space used: 56839297714
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)