Query 008110
Match_columns 577
No_of_seqs 92 out of 94
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 19:35:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4467 Uncharacterized conser 100.0 1E-129 3E-134 997.6 31.8 516 1-576 1-551 (557)
2 PF10151 DUF2359: Uncharacteri 100.0 2.1E-81 4.6E-86 672.6 26.3 277 260-558 1-281 (469)
3 KOG4467 Uncharacterized conser 99.7 1.8E-17 4E-22 172.2 5.1 243 300-555 4-309 (557)
4 PF04147 Nop14: Nop14-like fam 84.7 94 0.002 37.6 20.6 173 131-349 432-618 (840)
5 PF07539 DRIM: Down-regulated 52.5 47 0.001 31.6 6.7 90 421-544 16-109 (141)
6 PF10521 DUF2454: Protein of u 39.4 4.6E+02 0.01 27.2 13.0 109 289-408 90-204 (282)
7 KOG2235 Uncharacterized conser 39.2 44 0.00096 39.1 5.0 59 100-173 452-513 (776)
8 KOG3988 Protein-tyrosine sulfo 34.7 23 0.00051 38.0 1.8 72 156-238 246-326 (378)
9 KOG0406 Glutathione S-transfer 29.5 52 0.0011 34.0 3.3 36 468-504 69-104 (231)
10 PF10835 DUF2573: Protein of u 27.3 1.5E+02 0.0034 26.1 5.2 44 432-478 21-69 (82)
11 PF15387 DUF4611: Domain of un 25.5 54 0.0012 29.7 2.3 12 98-109 68-79 (96)
12 PF08283 Gemini_AL1_M: Geminiv 25.5 1.1E+02 0.0024 28.1 4.4 45 131-175 7-51 (106)
13 cd08780 Death_TRADD Death Doma 25.3 79 0.0017 28.5 3.2 58 153-221 8-66 (90)
14 smart00386 HAT HAT (Half-A-TPR 25.1 1E+02 0.0022 19.9 3.2 26 139-164 3-28 (33)
15 KOG1248 Uncharacterized conser 23.3 1.2E+03 0.026 29.8 13.4 205 265-565 74-279 (1176)
16 cd03571 ENTH_epsin ENTH domain 23.0 1.8E+02 0.0038 27.2 5.3 79 411-507 17-96 (123)
17 PF11657 Activator-TraM: Trans 21.6 4.5E+02 0.0098 25.5 7.8 50 431-489 20-69 (144)
No 1
>KOG4467 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-129 Score=997.61 Aligned_cols=516 Identities=52% Similarity=0.760 Sum_probs=484.6
Q ss_pred CCchhHHHHHHhhhhhhhhccCCCCCCCCCCceeeeccccccCCCCCCCCCCC-------CCCCCCCCChhhHHHHHHhH
Q 008110 1 MDENSALIEQILREDELEYRGLSRSYNKDEEWQTVSYKKRHSKQPNSDNSLPD-------RRPDDGATTSDVFRAIEEHS 73 (577)
Q Consensus 1 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~hgw~kv~~~k~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 73 (577)
||++++.++++|++.+ +.+||||+||+||||+|||+++|++++. |||++||+ .|||++||++|
T Consensus 1 mdpiesveynGFet~n---------gn~dhgWkkvvyPkr~rkqk~adqa~a~gg~t~~~ngt~~ngg-~nvfrSLeeqA 70 (557)
T KOG4467|consen 1 MDPIESVEYNGFETLN---------GNDDHGWKKVVYPKRNRKQKPADQAAALGGVTLIPNGTLSNGG-GNVFRSLEEQA 70 (557)
T ss_pred CChHHhhhhccccccC---------CCcccceeeeecccccccccchhhhhhcCCceeccCccccCCC-cchhhcccHHH
Confidence 9999999999999887 5699999999999999999999998765 78886665 89999999999
Q ss_pred HHHhhcccCCcccC------CCcCCCC-CCC-CCCCCcchhh----hhhhHHhhhccCCCCCCCCcccHHHHHhcCChhH
Q 008110 74 EERRRRMSVPQVAT------PVTGEGS-KRH-SDEDDDSDAE----VSAAVVEVKKVKQKKPKKPKVTVSEAAARIDAGD 141 (577)
Q Consensus 74 ~~r~~~~~~~~~~~------~~~~~~~-~~~-~~~~~~~~~~----~~~~~~e~kK~k~kk~kkPK~sLeeAa~~Id~~d 141 (577)
|+||+||++++..+ +..|++| +++ +|+++|+||. --.|.+|.|||||||.|||||||.||+.+||+-.
T Consensus 71 e~r~~riLaak~~~~~~d~~~~~rsk~rsnGyGd~GyDFd~sd~eia~lk~eevkkpkpkk~kkPkvsL~Eaa~kidpln 150 (557)
T KOG4467|consen 71 ETRLDRILAAKPNSDTADVSDGGRSKWRSNGYGDIGYDFDDSDSEIAVLKLEEVKKPKPKKSKKPKVSLQEAACKIDPLN 150 (557)
T ss_pred HHHHHHHHhcCCCccccccccccchhhccccCCccccccCCccchhheeeHHHhcccCcccccCCcccHHHHHhccCHHH
Confidence 99999999999886 6778887 444 7888888776 3367899999999999999999999999999999
Q ss_pred HHHHHHHhhhccCcchHHHHHHHHHHHhhhcccCCCCCCcccccccccccccccccCCCCCCHHHHHHHHHHHhhcChhh
Q 008110 142 LGAFLVDITGSYEKQEDIQLMRFADYFGRAFASVSSSQFPWLKTFRESTVAKMVDIPLSHVPEDVYKMSVDWLNQRSFDA 221 (577)
Q Consensus 142 L~~~L~~v~~sfp~~p~i~L~~~AdYln~~ls~v~~~~~pw~~mf~e~~l~k~~dyPLs~ip~~v~k~~i~~l~~~~~~~ 221 (577)
|.+||++. +.||+|||+++|+++.+||+++|+++
T Consensus 151 l~AFlvea----------------------------------------------s~pL~Hipepvyktsadwin~rPiEa 184 (557)
T KOG4467|consen 151 LLAFLVEA----------------------------------------------SSPLSHIPEPVYKTSADWINQRPIEA 184 (557)
T ss_pred HHHHhcCC----------------------------------------------CCccccCCcchhhccCCccccCCHHH
Confidence 99998653 36899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCccchhcccccchhHHHHHHHHHHHhhChHHHHhhchhhhcCCcccCCCchhHHHH
Q 008110 222 LGSFVLWSLDSILADLASHQGTGKSSKKVVQQASSKSQVAIFVVLAMVLRRKPDVLISLLPIKRENPKYQGQDKLPVTAW 301 (577)
Q Consensus 222 L~~Fv~~~L~~mltdL~~~~g~~kg~~~~~q~~~~~s~vG~~V~LqmIlr~~P~il~~~L~~l~~~s~~q~~~k~lsilW 301 (577)
++.|+.|.+++|+.|+..+|||.||+|+|.||++|+|+|.+|+.|+|++|.+|+.+++.||+++++.+||+|+++|+++|
T Consensus 185 lgafvlw~~dCil~Dla~qqgg~kggkKg~qQs~Sksqvaifvalamvlr~kPdaltn~LptlrenpKyqgQdkLpvtvw 264 (557)
T KOG4467|consen 185 LGAFVLWLTDCILVDLASQQGGRKGGKKGLQQSSSKSQVAIFVALAMVLRQKPDALTNSLPTLRENPKYQGQDKLPVTVW 264 (557)
T ss_pred HHHHHHHHHHHHhccHHHHhhhhhhcccccccccchhHHHHHHHHHHHHHhccHHHHHhhHHHHhCccccCcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccchhhHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhcCccchhhhcccccccCCcCCCcchHHHHHHhc
Q 008110 302 IIAQTAQGDLAVGLYMWVRVLLPMLSGKSSCNPQARDSILQLVERILSLPKARTILINGAVKKGERLVPPSALEVLMRVT 381 (577)
Q Consensus 302 aigQAg~~DL~vGL~vW~~imLPvL~~Ks~~sp~s~dlVlqylErILs~~kar~il~n~~v~kg~~li~p~~f~iL~~~t 381 (577)
|++||+|||.+||+|.|.|+++||++.|+ |+|++||+|+|+||+||.+|+||+|++||++|+|+|||||.+|+||+|+|
T Consensus 265 mmaqasQgDi~vglyswahnLlpVvg~k~-cnPqsRdLiLqLVe~il~npkaRtilvngAvrkGeRLipppsFeil~rlt 343 (557)
T KOG4467|consen 265 MMAQASQGDIVVGLYSWAHNLLPVVGPKS-CNPQSRDLILQLVEAILLNPKARTILVNGAVRKGERLIPPPSFEILVRLT 343 (557)
T ss_pred HhhccccCCeeeeehhhhcccccccCCCC-CCchHHHHHHHHHHHHHcCchHhHHhhhhhhhcCccccCCCcchhhhhcc
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHhchhhhHhHhcCCCCChhHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhccCchHHHHHH
Q 008110 382 FPAPSLRIKATERFEAIYPILKEVALAGSPGSKAMKQVAQHILTIAIKAAGEGIPDLSREASDIFIWALTQNPECYKQWD 461 (577)
Q Consensus 382 fP~sS~r~kater~eaiYP~LKelalag~p~s~a~kqv~qqiF~~~Lk~a~~~~~~l~kE~~~~~I~CLt~d~dC~k~Wr 461 (577)
||++|+|+|++|||++|||.|||++++|.|||++||||+||||++.++.+++.||.|++|+..++||.+|+|.||+++|.
T Consensus 344 fPASsArvKaterfeaiYplLkEv~lagapGSkamkqVtqqiftfAlk~age~np~Lakeaaai~iW~~tqn~Dcckhw~ 423 (557)
T KOG4467|consen 344 FPASSARVKATERFEAIYPLLKEVSLAGAPGSKAMKQVTQQIFTFALKHAGETNPFLAKEAAAILIWFGTQNVDCCKHWS 423 (557)
T ss_pred cccHHHHHHHHHHHHhhhHHHHhhhccCCCchHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhccCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhhcccCCCCcch--HHHHHHHHHHhcHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhcCC
Q 008110 462 MLYLDNLEASIVVLRKLSDEWKEHSVKDPKGDR--LRETLSSFKQKNEKELKKAEDATRIALLKDADKRRKLILRKLSQG 539 (577)
Q Consensus 462 ~lY~knl~~S~~LL~~L~~~W~~~s~Kl~~~~~--L~eTv~sfr~~N~e~~~~~~~~~~~~~~k~adk~Ck~il~k~s~~ 539 (577)
++|+.||++|+++|++++.+|+|++.||.|.+. |+.||+|||++|+|++++| +.++++|++|||+||+|.|+++++
T Consensus 424 nly~~nL~aSVavLkkll~ewkE~svkL~p~~~ltlN~tmkslr~kneEalteg--g~~~slyk~adk~Ck~i~G~ls~g 501 (557)
T KOG4467|consen 424 NLYQINLPASVAVLKKLLGEWKELSVKLLPAETLTLNVTMKSLRHKNEEALTEG--GVSQSLYKHADKACKVIAGELSWG 501 (557)
T ss_pred HHHHhhchhHHHHHHHHHHHHHhcccccCchhhhHHhhhHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHhhcCccccc
Confidence 999999999999999999999999999987666 7999999999999999999 899999999999999999999998
Q ss_pred CCchHHHHHHHHHH----HHhHHHhcCC----------CCcchHHhHhhhh
Q 008110 540 RGFMKHMVIVSAAV----AVGAVVVSQN----------MQSWDIKKVLEIF 576 (577)
Q Consensus 540 ~~~~~~~~~~~~~~----a~ga~~~s~~----------~~~~~~~~~~~~~ 576 (577)
+|++..+..++-+ +++|+|+|.| +|++|.+|+++.+
T Consensus 502 -gCmKt~astav~laa~g~a~aavls~npea~a~lknlv~sl~ink~te~v 551 (557)
T KOG4467|consen 502 -GCMKTQASTAVHLAALGLADAAVLSLNPEALALLKNLVESLDINKFTETV 551 (557)
T ss_pred -chHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHhhhhhHHHHHH
Confidence 9999755443332 3355888888 6778888888875
No 2
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=100.00 E-value=2.1e-81 Score=672.59 Aligned_cols=277 Identities=41% Similarity=0.670 Sum_probs=262.8
Q ss_pred HHHHHHHHHHHhhChHHHHhhchhhhc--CCcccCCCchhHHHHHhhhccccchhhHHHHHHHHhhhcccCCCCCCchhH
Q 008110 260 VAIFVVLAMVLRRKPDVLISLLPIKRE--NPKYQGQDKLPVTAWIIAQTAQGDLAVGLYMWVRVLLPMLSGKSSCNPQAR 337 (577)
Q Consensus 260 vG~~V~LqmIlr~~P~il~~~L~~l~~--~s~~q~~~k~lsilWaigQAg~~DL~vGL~vW~~imLPvL~~Ks~~sp~s~ 337 (577)
+|||||||||+|++|+||++|||++++ |++||||++||+||||||||||+||+|||+||+|+|||+|++|+ |+||
T Consensus 1 ~Gyki~LQ~i~~~~P~i~~~nL~k~~~lr~s~qnr~~~~LsilWaigQag~~DL~vGLkvW~~~mLP~l~~K~-~s~~-- 77 (469)
T PF10151_consen 1 HGYKICLQAIAQSKPDICTNNLPKYAELRNSYQNRPNICLSILWAIGQAGQGDLSVGLKVWQHLMLPVLELKS-YSPY-- 77 (469)
T ss_pred CcHHHHHHHHHccCcHHHHHhHHHHHHHHHhhhcCCchhHHHHHHHhcccccchHHHHHHHHHhhhhhccCCC-cchH--
Confidence 599999999999999999999999744 78999999999999999999999999999999999999999999 9997
Q ss_pred HHHHHHHHHHhcCccchhhhcccccccCCcCCCcchHHHHHHhcCCCCcchhhH-HHHHHHhchhhhHhHhcCCCCChhH
Q 008110 338 DSILQLVERILSLPKARTILINGAVKKGERLVPPSALEVLMRVTFPAPSLRIKA-TERFEAIYPILKEVALAGSPGSKAM 416 (577)
Q Consensus 338 dlVlqylErILs~~kar~il~n~~v~kg~~li~p~~f~iL~~~tfP~sS~r~ka-ter~eaiYP~LKelalag~p~s~a~ 416 (577)
|+|||||||+ +|+++++|+|+|||+.|+++++++||.++.++++ +|||+++||+|||++|+|+|+|++
T Consensus 78 --vi~yleriL~--------~~~~~~~g~~li~p~~F~~ll~~~f~~~~~~~k~l~e~l~~~yp~LK~la~~~~p~s~~- 146 (469)
T PF10151_consen 78 --VIQYLERILS--------LHGNVTKGERLIPPQEFFPLLRLTFPPSNSLSKALQERLEAIYPRLKELAFAGKPGSTL- 146 (469)
T ss_pred --HHHHHHHHHh--------cCcccccCcCCCCHHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHhcCCchhHH-
Confidence 5699999995 9999999999999999999999999999998885 899999999999999999999976
Q ss_pred HHHHHHHHHHHHHHhc-CCChhhHHHHHHHHHHhhccCchHHHHHHHHHHhhHHHHHHHHHHHHhhhhhcccCCCCcchH
Q 008110 417 KQVAQHILTIAIKAAG-EGIPDLSREASDIFIWALTQNPECYKQWDMLYLDNLEASIVVLRKLSDEWKEHSVKDPKGDRL 495 (577)
Q Consensus 417 kqv~qqiF~~~Lk~a~-~~~~~l~kE~~~~~I~CLt~d~dC~k~Wr~lY~knl~~S~~LL~~L~~~W~~~s~Kl~~~~~L 495 (577)
++||++++..++ +++++|++|+++++||||++|++||++||++|+||++||++||+||+++|+++++|| .++|
T Consensus 147 ----~~~f~~~l~~~~~~~~~~~~~E~~~~li~CLt~d~~c~~~Wr~lY~knl~~S~llL~~l~~~W~~~s~KL--~k~l 220 (469)
T PF10151_consen 147 ----HTYFPSFLSKATPECPPELKKELISILIWCLTQDPDCFKVWRQLYKKNLKQSVLLLKHLDDEWKESSKKL--SKSL 220 (469)
T ss_pred ----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhhHHH--HHHH
Confidence 789999997776 788899999999999999999999999999999999999999999999999999999 4599
Q ss_pred HHHHHHHHHhcHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhHH
Q 008110 496 RETLSSFKQKNEKELKKAEDATRIALLKDADKRRKLILRKLSQGRGFMKHMVIVSAAVAVGAV 558 (577)
Q Consensus 496 ~eTv~sfr~~N~e~~~~~~~~~~~~~~k~adk~Ck~il~k~s~~~~~~~~~~~~~~~~a~ga~ 558 (577)
+|||+|||++|+|+++++ .++.+++++||++||+|++||+++++||+.+++++++|++|++
T Consensus 221 ~~Tl~sfr~~Nee~~~k~--~~~~~~lk~~dk~Ck~il~K~~~~~c~w~~l~llllvliaG~l 281 (469)
T PF10151_consen 221 KETLKSFRLKNEELLKKG--KAKDESLKECDKACKVILGKMSGSSCPWTRLLLLLLVLIAGFL 281 (469)
T ss_pred HHHHHHHHHhHHHHHhcc--ccchHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHH
Confidence 999999999999999998 6789999999999999999999999999999999998998864
No 3
>KOG4467 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.8e-17 Score=172.23 Aligned_cols=243 Identities=14% Similarity=0.022 Sum_probs=203.6
Q ss_pred HHHhhhccccchhhH-HHHHHHHhhh-------------ccc-----------------CCCCCCchhHHHHHHHHHHHh
Q 008110 300 AWIIAQTAQGDLAVG-LYMWVRVLLP-------------MLS-----------------GKSSCNPQARDSILQLVERIL 348 (577)
Q Consensus 300 lWaigQAg~~DL~vG-L~vW~~imLP-------------vL~-----------------~Ks~~sp~s~dlVlqylErIL 348 (577)
+|.++|+||.+++.| ..+|..+|+| +++ .++ +.||+. .|+.|||
T Consensus 4 iesveynGFet~ngn~dhgWkkvvyPkr~rkqk~adqa~a~gg~t~~~ngt~~ngg~nvfrS-LeeqAe----~r~~riL 78 (557)
T KOG4467|consen 4 IESVEYNGFETLNGNDDHGWKKVVYPKRNRKQKPADQAAALGGVTLIPNGTLSNGGGNVFRS-LEEQAE----TRLDRIL 78 (557)
T ss_pred HHhhhhccccccCCCcccceeeeecccccccccchhhhhhcCCceeccCccccCCCcchhhc-ccHHHH----HHHHHHH
Confidence 799999999999999 9999999999 777 456 778876 9999999
Q ss_pred cC-ccchhhhcccc-----cccCCcCCCcch---------HHHHHHhc-CCCCcchh--hHHHHHHHhchhhhHhHhcCC
Q 008110 349 SL-PKARTILINGA-----VKKGERLVPPSA---------LEVLMRVT-FPAPSLRI--KATERFEAIYPILKEVALAGS 410 (577)
Q Consensus 349 s~-~kar~il~n~~-----v~kg~~li~p~~---------f~iL~~~t-fP~sS~r~--kater~eaiYP~LKelalag~ 410 (577)
.. |.+-+.-+.+. ..+|.+.++-.| |.+..... .|+.+..+ +.+|...+||| |+-+||.-.
T Consensus 79 aak~~~~~~d~~~~~rsk~rsnGyGd~GyDFd~sd~eia~lk~eevkkpkpkk~kkPkvsL~Eaa~kidp-lnl~AFlve 157 (557)
T KOG4467|consen 79 AAKPNSDTADVSDGGRSKWRSNGYGDIGYDFDDSDSEIAVLKLEEVKKPKPKKSKKPKVSLQEAACKIDP-LNLLAFLVE 157 (557)
T ss_pred hcCCCccccccccccchhhccccCCccccccCCccchhheeeHHHhcccCcccccCCcccHHHHHhccCH-HHHHHHhcC
Confidence 42 22222222222 335677787556 66666664 88888765 89999999999 999999988
Q ss_pred CCChhHHHHHHHHHHHHHHHhc---CCChhhHHHHHHHHHHhhccCchHHHHHHHHHHhhHHHH-----HHHHHHHHhhh
Q 008110 411 PGSKAMKQVAQHILTIAIKAAG---EGIPDLSREASDIFIWALTQNPECYKQWDMLYLDNLEAS-----IVVLRKLSDEW 482 (577)
Q Consensus 411 p~s~a~kqv~qqiF~~~Lk~a~---~~~~~l~kE~~~~~I~CLt~d~dC~k~Wr~lY~knl~~S-----~~LL~~L~~~W 482 (577)
|.+.+ +|.+||++...+. .+++++.++++..+.+|++.|..+-..|++.|+|++.|| ++|+-++...|
T Consensus 158 as~pL----~Hipepvyktsadwin~rPiEalgafvlw~~dCil~Dla~qqgg~kggkKg~qQs~Sksqvaifvalamvl 233 (557)
T KOG4467|consen 158 ASSPL----SHIPEPVYKTSADWINQRPIEALGAFVLWLTDCILVDLASQQGGRKGGKKGLQQSSSKSQVAIFVALAMVL 233 (557)
T ss_pred CCCcc----ccCCcchhhccCCccccCCHHHHHHHHHHHHHHHhccHHHHhhhhhhcccccccccchhHHHHHHHHHHHH
Confidence 87764 7899999998776 488999999999999999999999999999999999998 49999999999
Q ss_pred hhcccCCCCcchHHHHHHHHHHhcHHHh----hhhhhhhhhhHHHHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHHH
Q 008110 483 KEHSVKDPKGDRLRETLSSFKQKNEKEL----KKAEDATRIALLKDADKRRKLILRKLSQGR--GFMKHMVIVSAAVAV 555 (577)
Q Consensus 483 ~~~s~Kl~~~~~L~eTv~sfr~~N~e~~----~~~~~~~~~~~~k~adk~Ck~il~k~s~~~--~~~~~~~~~~~~~a~ 555 (577)
...+.++ .++|.++.++-+.+|++.+ -.+ ..+++.++..|+-+|+..|.-.-+.+ .||++.+++.+|+++
T Consensus 234 r~kPdal--tn~LptlrenpKyqgQdkLpvtvwmm-aqasQgDi~vglyswahnLlpVvg~k~cnPqsRdLiLqLVe~i 309 (557)
T KOG4467|consen 234 RQKPDAL--TNSLPTLRENPKYQGQDKLPVTVWMM-AQASQGDIVVGLYSWAHNLLPVVGPKSCNPQSRDLILQLVEAI 309 (557)
T ss_pred HhccHHH--HHhhHHHHhCccccCcccchHHHHHh-hccccCCeeeeehhhhcccccccCCCCCCchHHHHHHHHHHHH
Confidence 9999999 7889999999999999987 333 14667799999999999999998887 679998999888874
No 4
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=84.69 E-value=94 Score=37.55 Aligned_cols=173 Identities=16% Similarity=0.155 Sum_probs=94.2
Q ss_pred HHHHhcCChhHHHHHHHHhhhcc-Cc----chHHHHHHHHHHHhhhcccCCCCCCcccccccccccccccccCCCCCCHH
Q 008110 131 SEAAARIDAGDLGAFLVDITGSY-EK----QEDIQLMRFADYFGRAFASVSSSQFPWLKTFRESTVAKMVDIPLSHVPED 205 (577)
Q Consensus 131 eeAa~~Id~~dL~~~L~~v~~sf-p~----~p~i~L~~~AdYln~~ls~v~~~~~pw~~mf~e~~l~k~~dyPLs~ip~~ 205 (577)
.+-+...++++...++.+|-..| |. | ---|..|..||-.+|..+. ..+ + ..+-.
T Consensus 432 ~~lL~~~~~~~~~~iI~RIrk~~hpsLa~~N-K~Kl~~f~~vLlq~i~~la----------~~~-------~---~~~~~ 490 (840)
T PF04147_consen 432 LELLDGYSPEDQPTIIQRIRKCYHPSLAEGN-KEKLQVFFGVLLQHILYLA----------SQD-------S---PPPFE 490 (840)
T ss_pred HHHHhcCCHHHHhHHHHHHHHhCCCCCCcch-HHHHHHHHHHHHHHHHHHh----------ccc-------C---CcCHH
Confidence 34555667889999999999887 42 2 2345566666665555321 110 0 23334
Q ss_pred HHHHHHHHHhhcCh---hhHHHHHHHHHHHHHHHhhccCCCCCCccchhcccccchhHHHHHHHHHHHhhChHHHHhhch
Q 008110 206 VYKMSVDWLNQRSF---DALGSFVLWSLDSILADLASHQGTGKSSKKVVQQASSKSQVAIFVVLAMVLRRKPDVLISLLP 282 (577)
Q Consensus 206 v~k~~i~~l~~~~~---~~L~~Fv~~~L~~mltdL~~~~g~~kg~~~~~q~~~~~s~vG~~V~LqmIlr~~P~il~~~L~ 282 (577)
+...++.+|-..+. ..++.+|.--|..|-..+.+..-..+ ..+-|.+|..|+|.+|..-+|--
T Consensus 491 ~ld~L~~~L~~Laq~~p~~~a~~~r~~L~~~~~~~~~~~l~~~--------~~~~P~l~~Lvllklv~~lFPTS------ 556 (840)
T PF04147_consen 491 VLDSLIPHLYDLAQKYPEEAAECFREVLKEMQKRFRKGALKPK--------ERSWPSLSDLVLLKLVGTLFPTS------ 556 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--------CCCCCChhHHHHHHHHHHhcCcc------
Confidence 44455555544333 35666666667777666655311000 01247889999999998877721
Q ss_pred hhhcCCcccCCCchhHHH---HHhhhc---cccchhhHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhc
Q 008110 283 IKRENPKYQGQDKLPVTA---WIIAQT---AQGDLAVGLYMWVRVLLPMLSGKSSCNPQARDSILQLVERILS 349 (577)
Q Consensus 283 ~l~~~s~~q~~~k~lsil---WaigQA---g~~DL~vGL~vW~~imLPvL~~Ks~~sp~s~dlVlqylErILs 349 (577)
=|.-|-..|+++ =.++|. +..|+..||++=. ++|=......-|.|.+ +-|+..+|.
T Consensus 557 ------D~~HpVVTPalllm~~~L~q~~v~s~~di~~GlfL~~-l~l~y~~~SKR~vPEv----inFL~~~L~ 618 (840)
T PF04147_consen 557 ------DFRHPVVTPALLLMSEYLSQCRVRSLRDIASGLFLCT-LLLEYQSLSKRFVPEV----INFLLGLLL 618 (840)
T ss_pred ------cccCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HHHHHHHHhcccChHH----HHHHHHHHH
Confidence 111111112211 123333 4567888988743 3333333333388884 477777773
No 5
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=52.54 E-value=47 Score=31.56 Aligned_cols=90 Identities=20% Similarity=0.400 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhhccCchHHHHHHH----HHHhhHHHHHHHHHHHHhhhhhcccCCCCcchHH
Q 008110 421 QHILTIAIKAAGEGIPDLSREASDIFIWALTQNPECYKQWDM----LYLDNLEASIVVLRKLSDEWKEHSVKDPKGDRLR 496 (577)
Q Consensus 421 qqiF~~~Lk~a~~~~~~l~kE~~~~~I~CLt~d~dC~k~Wr~----lY~knl~~S~~LL~~L~~~W~~~s~Kl~~~~~L~ 496 (577)
..++..++...+..++++.+-++ +|.-.|+. -|.+||+ .|. .-+.++
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL-----------~cll~~k~~~l~pY~d~L~-------~Ll-----------dd~~fr 66 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLAL-----------DCLLTWKDPYLTPYKDNLE-------NLL-----------DDKTFR 66 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-----------HHHHHhCcHHHHhHHHHHH-------HHc-----------CcchHH
Confidence 45666667777888888888877 34445665 7888762 221 235789
Q ss_pred HHHHHHHHhcHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCCchH
Q 008110 497 ETLSSFKQKNEKELKKAEDATRIALLKDADKRRKLILRKLSQGRGFMK 544 (577)
Q Consensus 497 eTv~sfr~~N~e~~~~~~~~~~~~~~k~adk~Ck~il~k~s~~~~~~~ 544 (577)
++|..|.+..+...=+. ......+ --.++.+.|||.++++.-.
T Consensus 67 deL~~f~~~~~~~~I~~--ehR~~l~---pvvlRILygk~~~~~~~~~ 109 (141)
T PF07539_consen 67 DELTTFNLSDESSVIEE--EHRPELM---PVVLRILYGKMQSRKGSGS 109 (141)
T ss_pred HHHHhhcccCCcCCCCH--HHHhHHH---HHHHHHHHHHHhhcCCCCC
Confidence 99999998876422111 1222222 2368899999998866553
No 6
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=39.38 E-value=4.6e+02 Score=27.24 Aligned_cols=109 Identities=18% Similarity=0.212 Sum_probs=74.4
Q ss_pred cccCCCchhHHHHHhh-hccccchhhHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhcCccchh---hhccccccc
Q 008110 289 KYQGQDKLPVTAWIIA-QTAQGDLAVGLYMWVRVLLPMLSGKSSCNPQARDSILQLVERILSLPKART---ILINGAVKK 364 (577)
Q Consensus 289 ~~q~~~k~lsilWaig-QAg~~DL~vGL~vW~~imLPvL~~Ks~~sp~s~dlVlqylErILs~~kar~---il~n~~v~k 364 (577)
++++.-+...+.|.+. |.....+. ..|--++-|+|..=..++|..+-.=++.+..+|....+.. +..
T Consensus 90 K~~~~~~~~~l~w~v~~~~~~~~i~---~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~------ 160 (282)
T PF10521_consen 90 KSNPGLASHVLSWIVLSQLDRPWIS---QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRR------ 160 (282)
T ss_pred ccCCcccHHHHHHHHHhcCCcchHH---HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH------
Confidence 4555566789999999 88888887 7888888888876666788877677788888886444443 221
Q ss_pred CCcCCCcchHHHHHHh--cCCCCcchhhHHHHHHHhchhhhHhHhc
Q 008110 365 GERLVPPSALEVLMRV--TFPAPSLRIKATERFEAIYPILKEVALA 408 (577)
Q Consensus 365 g~~li~p~~f~iL~~~--tfP~sS~r~kater~eaiYP~LKelala 408 (577)
+.+.+-+.+.+... ..|..-.-...-.=+...||.|-.++-.
T Consensus 161 --tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~ 204 (282)
T PF10521_consen 161 --TGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKT 204 (282)
T ss_pred --cChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHh
Confidence 23445567776553 2354333334555678899998888554
No 7
>KOG2235 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.16 E-value=44 Score=39.12 Aligned_cols=59 Identities=24% Similarity=0.300 Sum_probs=36.6
Q ss_pred CCCcchhh---hhhhHHhhhccCCCCCCCCcccHHHHHhcCChhHHHHHHHHhhhccCcchHHHHHHHHHHHhhhcc
Q 008110 100 EDDDSDAE---VSAAVVEVKKVKQKKPKKPKVTVSEAAARIDAGDLGAFLVDITGSYEKQEDIQLMRFADYFGRAFA 173 (577)
Q Consensus 100 ~~~~~~~~---~~~~~~e~kK~k~kk~kkPK~sLeeAa~~Id~~dL~~~L~~v~~sfp~~p~i~L~~~AdYln~~ls 173 (577)
|.||+|++ ++.+++|.||-= || +-=.++.+.+.-++..++ ++|+-.|+.+|+|++--|-
T Consensus 452 d~dDsda~sqss~~g~~~skk~i-----kP------~~~~k~~d~v~~~~~~~q----e~peeiLs~iae~l~~~ln 513 (776)
T KOG2235|consen 452 DKDDSDAPSQSSNLGAQESKKII-----KP------ANISKNSDIVEIWLRESQ----EVPEEILSVIAEKLNQELN 513 (776)
T ss_pred ccccccccccccccccccccccC-----CC------ceeeechhhHHHHHHhhh----hchHHHHHHHHHHHHHHHH
Confidence 55666666 677777766632 22 111334455555555554 5788899999999976654
No 8
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=34.68 E-value=23 Score=38.00 Aligned_cols=72 Identities=14% Similarity=0.239 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHHhhhcccCCCCCCcccccccccccc-cccccCCCCCCHHH--------HHHHHHHHhhcChhhHHHHH
Q 008110 156 QEDIQLMRFADYFGRAFASVSSSQFPWLKTFRESTVA-KMVDIPLSHVPEDV--------YKMSVDWLNQRSFDALGSFV 226 (577)
Q Consensus 156 ~p~i~L~~~AdYln~~ls~v~~~~~pw~~mf~e~~l~-k~~dyPLs~ip~~v--------~k~~i~~l~~~~~~~L~~Fv 226 (577)
-|..|+.++.+||.+.++ ++++....+. |+-+++||.+-.+- .+.+..|.++-|++.|...-
T Consensus 246 hPe~~mr~Il~FLdipw~---------d~vLhHedlIgk~~gVsLskvErSsdQVikpVNl~AlskWvg~ip~dvvrdma 316 (378)
T KOG3988|consen 246 HPEEWMRRILKFLDIPWS---------DAVLHHEDLIGKPGGVSLSKVERSSDQVIKPVNLEALSKWVGCIPEDVVRDMA 316 (378)
T ss_pred CHHHHHHHHHHHhCCCcH---------HHHHhHHHhcCCCCCCChhhhhccHhhhhccccHHHHHHHhccCCHHHHHHHH
Confidence 578899999999988777 5677755555 89999999874322 14566777777777766533
Q ss_pred HHHHHHHHHHhh
Q 008110 227 LWSLDSILADLA 238 (577)
Q Consensus 227 ~~~L~~mltdL~ 238 (577)
-+.-||..|.
T Consensus 317 --~iAPmL~~LG 326 (378)
T KOG3988|consen 317 --DIAPMLAILG 326 (378)
T ss_pred --HHHHHHHHhC
Confidence 3344555553
No 9
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.51 E-value=52 Score=34.03 Aligned_cols=36 Identities=11% Similarity=0.282 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhhhhcccCCCCcchHHHHHHHHHH
Q 008110 468 LEASIVVLRKLSDEWKEHSVKDPKGDRLRETLSSFKQ 504 (577)
Q Consensus 468 l~~S~~LL~~L~~~W~~~s~Kl~~~~~L~eTv~sfr~ 504 (577)
+-.|+.+++||++.|++ .+.+-|+++.+.++.-|=.
T Consensus 69 i~ESliiveYiDe~w~~-~~~iLP~DPy~Ra~arfwa 104 (231)
T KOG0406|consen 69 ICESLIIVEYIDETWPS-GPPILPSDPYERAQARFWA 104 (231)
T ss_pred ehhhHHHHHHHHhhccC-CCCCCCCCHHHHHHHHHHH
Confidence 55689999999999998 4444588998877776644
No 10
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=27.25 E-value=1.5e+02 Score=26.15 Aligned_cols=44 Identities=25% Similarity=0.547 Sum_probs=26.6
Q ss_pred cCCChhhHHHHHHHHHHhhccC-----chHHHHHHHHHHhhHHHHHHHHHHH
Q 008110 432 GEGIPDLSREASDIFIWALTQN-----PECYKQWDMLYLDNLEASIVVLRKL 478 (577)
Q Consensus 432 ~~~~~~l~kE~~~~~I~CLt~d-----~dC~k~Wr~lY~knl~~S~~LL~~L 478 (577)
|+.+|++..+ +=+|||-.- |--.++|...|++--.+...|...|
T Consensus 21 Ge~~~e~~Ek---Vk~W~lYshiaKsMPpL~kHWN~~~PeaK~~ik~li~~I 69 (82)
T PF10835_consen 21 GETSPEMKEK---VKQWALYSHIAKSMPPLAKHWNGTYPEAKEEIKELIEEI 69 (82)
T ss_pred cCCCHHHHHH---HHHHHHHHHHHHhCcHHHHhhcccCchHHHHHHHHHHHH
Confidence 4677777766 447887543 5566777777777544444443333
No 11
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=25.53 E-value=54 Score=29.72 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=6.8
Q ss_pred CCCCCcchhhhh
Q 008110 98 SDEDDDSDAEVS 109 (577)
Q Consensus 98 ~~~~~~~~~~~~ 109 (577)
+|||||++|+.|
T Consensus 68 g~deddaede~n 79 (96)
T PF15387_consen 68 GDDEDDAEDENN 79 (96)
T ss_pred CccccccccccC
Confidence 555556666544
No 12
>PF08283 Gemini_AL1_M: Geminivirus rep protein central domain; InterPro: IPR022692 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. This is the central region of the geminivirus rep proteins []. It is found C-terminal to PF00799 from PFAM and is thought to be responsible for oligomerisation.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters
Probab=25.49 E-value=1.1e+02 Score=28.11 Aligned_cols=45 Identities=24% Similarity=0.139 Sum_probs=38.4
Q ss_pred HHHHhcCChhHHHHHHHHhhhccCcchHHHHHHHHHHHhhhcccC
Q 008110 131 SEAAARIDAGDLGAFLVDITGSYEKQEDIQLMRFADYFGRAFASV 175 (577)
Q Consensus 131 eeAa~~Id~~dL~~~L~~v~~sfp~~p~i~L~~~AdYln~~ls~v 175 (577)
.+.+++|+..--.++|.-|++.+|..=.+++..|-..+++.|+.+
T Consensus 7 Da~a~aina~sk~EaL~iike~~P~d~~~q~hnl~~na~riF~~~ 51 (106)
T PF08283_consen 7 DAYARAINAGSKEEALSIIKELAPKDWVLQLHNLEYNADRIFPPP 51 (106)
T ss_pred HHHHHHHhcCCHHHHHHHHHhcCchHHHHHhHHHHHHHHHhCCCC
Confidence 345667788888999999999999988888889999999999854
No 13
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=25.28 E-value=79 Score=28.46 Aligned_cols=58 Identities=9% Similarity=0.176 Sum_probs=40.0
Q ss_pred cCcchHHHHHHHHHHHhhhcccCCCCCCcccccccccccc-cccccCCCCCCHHHHHHHHHHHhhcChhh
Q 008110 153 YEKQEDIQLMRFADYFGRAFASVSSSQFPWLKTFRESTVA-KMVDIPLSHVPEDVYKMSVDWLNQRSFDA 221 (577)
Q Consensus 153 fp~~p~i~L~~~AdYln~~ls~v~~~~~pw~~mf~e~~l~-k~~dyPLs~ip~~v~k~~i~~l~~~~~~~ 221 (577)
|.++....=++++-.|+..-.++ +++.+- =..+||=.-+-+-||+.+..|..+.+..+
T Consensus 8 ~~~nvGr~WK~laR~Lg~~cral-----------~d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~A 66 (90)
T cd08780 8 FAKSVGKKWKPVGRSLQKNCRAL-----------RDPAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKKA 66 (90)
T ss_pred HHHHHhHHHHHHHHHHccccccc-----------chhHHHHHHhhcccccHHHHHHHHHHHHHHhccccc
Confidence 33444556678888888543322 232222 23589999999999999999999888774
No 14
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=25.13 E-value=1e+02 Score=19.94 Aligned_cols=26 Identities=8% Similarity=-0.012 Sum_probs=20.8
Q ss_pred hhHHHHHHHHhhhccCcchHHHHHHH
Q 008110 139 AGDLGAFLVDITGSYEKQEDIQLMRF 164 (577)
Q Consensus 139 ~~dL~~~L~~v~~sfp~~p~i~L~~~ 164 (577)
.+.....+++.-..||..+++|+..+
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 45566778888889999999998764
No 15
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.32 E-value=1.2e+03 Score=29.79 Aligned_cols=205 Identities=15% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHhhChH-HHHhhchhhhcCCcccCCCchhHHHHHhhhccccchhhHHHHHHHHhhhcccCCCCCCchhHHHHHHH
Q 008110 265 VLAMVLRRKPD-VLISLLPIKRENPKYQGQDKLPVTAWIIAQTAQGDLAVGLYMWVRVLLPMLSGKSSCNPQARDSILQL 343 (577)
Q Consensus 265 ~LqmIlr~~P~-il~~~L~~l~~~s~~q~~~k~lsilWaigQAg~~DL~vGL~vW~~imLPvL~~Ks~~sp~s~dlVlqy 343 (577)
+|.||+++-|. ++.+.++.. ..+|.|.+...+ .|--.+..++.-
T Consensus 74 LL~li~~~VPs~vL~~kFs~~----------------------------------~~~l~~~~~~~s-tn~svlr~~isc 118 (1176)
T KOG1248|consen 74 LLVLILKYVPSPVLQAKFSDT----------------------------------LNILAPFLTAES-TNGSVLRLAISC 118 (1176)
T ss_pred HHHHHHhhCCHHHHHHHHHHH----------------------------------HHHHHHHHhhhc-ccchHHHHHHHH
Q ss_pred HHHHhcCccchhhhcccccccCCcCCCcchHHHHHHhcCCCCcchhhHHHHHHHhchhhhHhHhcCCCCChhHHHHHHHH
Q 008110 344 VERILSLPKARTILINGAVKKGERLVPPSALEVLMRVTFPAPSLRIKATERFEAIYPILKEVALAGSPGSKAMKQVAQHI 423 (577)
Q Consensus 344 lErILs~~kar~il~n~~v~kg~~li~p~~f~iL~~~tfP~sS~r~kater~eaiYP~LKelalag~p~s~a~kqv~qqi 423 (577)
++.||.+.++..=..++..+ .+|-+|.++..+..=-|.-|+.-..++.- |+|-..- ..
T Consensus 119 L~~lLraQd~~aW~~~~t~~--------~~~~il~~~~h~~pkvRk~a~~~i~~VL~--------~p~~~~~------~~ 176 (1176)
T KOG1248|consen 119 LEDLLRAQDASAWSYSSTKT--------ELFGILAFAAHKKPKVRKAAQRGIAAVLK--------GPPFAPD------AE 176 (1176)
T ss_pred HHHHHHHcchhhhccccHHH--------HHHHHHHHHhcCchHHHHHHHHHHHHHHc--------CCCCCcc------cc
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhhccCchHHHHHHHHHHhhHHHHHHHHHHHHhhhhhcccCCCCcchHHHHHHHHH
Q 008110 424 LTIAIKAAGEGIPDLSREASDIFIWALTQNPECYKQWDMLYLDNLEASIVVLRKLSDEWKEHSVKDPKGDRLRETLSSFK 503 (577)
Q Consensus 424 F~~~Lk~a~~~~~~l~kE~~~~~I~CLt~d~dC~k~Wr~lY~knl~~S~~LL~~L~~~W~~~s~Kl~~~~~L~eTv~sfr 503 (577)
-|-++..+..|...+...+. ..=.-++--++.||+-+...|+. +-.++|-|++-+..
T Consensus 177 HpA~~~vak~cl~~~e~~~~------------------~a~~t~v~~~L~Ll~~~~~~~p~-----~li~sl~e~lL~i~ 233 (1176)
T KOG1248|consen 177 HPASLSVAKFCLALIESKLG------------------SAENTTVLRSLMLLRDVLSTFPR-----PLIKSLCEVLLNIT 233 (1176)
T ss_pred chHHHHHHHHHHHHHHhhhc------------------hHHHHHHHHHHHHHHHhhccCCH-----HHHHHHHHHHHhhc
Q ss_pred HhcHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhHHHhcCCCC
Q 008110 504 QKNEKELKKAEDATRIALLKDADKRRKLILRKLSQGRGFMKHMVIVSAAVAVGAVVVSQNMQ 565 (577)
Q Consensus 504 ~~N~e~~~~~~~~~~~~~~k~adk~Ck~il~k~s~~~~~~~~~~~~~~~~a~ga~~~s~~~~ 565 (577)
-..+-...-. |=.++..|..++.|-..+.+.+-++.++.- ++|..+
T Consensus 234 ~~s~v~v~~~---------------~~q~l~~lf~~~~~~l~a~~~a~lL~al~~-l~ps~~ 279 (1176)
T KOG1248|consen 234 TESPVLVLLE---------------VLQCLHSLFKKHPTALAAELNARLLTALMT-LSPSEN 279 (1176)
T ss_pred ccchHHHHHH---------------HHHHHHHHHhcCCCcchHHHHHHHHHHHHH-hCCCcc
No 16
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=23.00 E-value=1.8e+02 Score=27.16 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=46.9
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhccCchHHHHHHHHHHhhHHHHHHHHHHHHhhhhhcccC-C
Q 008110 411 PGSKAMKQVAQHILTIAIKAAGEGIPDLSREASDIFIWALTQNPECYKQWDMLYLDNLEASIVVLRKLSDEWKEHSVK-D 489 (577)
Q Consensus 411 p~s~a~kqv~qqiF~~~Lk~a~~~~~~l~kE~~~~~I~CLt~d~dC~k~Wr~lY~knl~~S~~LL~~L~~~W~~~s~K-l 489 (577)
|-++.|.++++..|. .+--.|+.+.+--+|... =+.||..|+- +.||.||..+=.+.-.. +
T Consensus 17 p~~~~m~eIa~~t~~----------~~~~~~Im~~l~kRL~~~---~k~WR~vyKa-----L~lleyLl~nGse~vv~~~ 78 (123)
T cd03571 17 PSGTLMAEIARATYN----------YVEFQEIMSMLWKRLNDK---GKNWRHVYKA-----LTLLEYLLKNGSERVVDDA 78 (123)
T ss_pred CCHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHhc---cccHHHHHHH-----HHHHHHHHHhCCHHHHHHH
Confidence 335556666665442 223345666777777666 6788888875 88999998764331111 1
Q ss_pred CCcchHHHHHHHHHHhcH
Q 008110 490 PKGDRLRETLSSFKQKNE 507 (577)
Q Consensus 490 ~~~~~L~eTv~sfr~~N~ 507 (577)
-....+=+++++|+...+
T Consensus 79 r~~~~~i~~L~~F~~~d~ 96 (123)
T cd03571 79 RENLYIIRTLKDFQYIDE 96 (123)
T ss_pred HHhHHHHHhhccceeeCC
Confidence 001224567788877655
No 17
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=21.63 E-value=4.5e+02 Score=25.48 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=34.3
Q ss_pred hcCCChhhHHHHHHHHHHhhccCchHHHHHHHHHHhhHHHHHHHHHHHHhhhhhcccCC
Q 008110 431 AGEGIPDLSREASDIFIWALTQNPECYKQWDMLYLDNLEASIVVLRKLSDEWKEHSVKD 489 (577)
Q Consensus 431 a~~~~~~l~kE~~~~~I~CLt~d~dC~k~Wr~lY~knl~~S~~LL~~L~~~W~~~s~Kl 489 (577)
.++++|-|--. |.|.-|+..=...-.+.+.+...=|.-+..+|.+-+++-
T Consensus 20 L~~DDPILil~---------TiNe~ll~~~~~aq~~~l~~fk~elE~~~~~w~~dak~k 69 (144)
T PF11657_consen 20 LSRDDPILILQ---------TINERLLEDSAKAQQEQLDQFKEELEEIASRWGEDAKEK 69 (144)
T ss_pred cCCCCchHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566655433 345556666677777888888888888889998877654
Done!