Query 008110
Match_columns 577
No_of_seqs 92 out of 94
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 18:21:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_B AP-2 complex subunit be 27.8 1.4E+02 0.0047 32.0 8.1 96 199-309 362-458 (591)
2 4ffb_C Protein STU2; tubulin f 26.3 4.2E+02 0.014 25.0 11.4 71 417-489 178-248 (278)
3 1inz_A EPS15-interacting porte 23.5 91 0.0031 28.6 4.9 55 411-483 39-93 (148)
4 1eyh_A Epsin; superhelix of he 19.9 1.1E+02 0.0039 27.8 4.8 53 411-481 21-73 (144)
5 1xgw_A Epsin 4; ENTH, enthopro 17.6 97 0.0033 29.4 3.8 57 411-484 50-106 (176)
6 3tj1_A RNA polymerase I-specif 14.0 7.1E+02 0.024 28.1 10.1 117 193-347 140-259 (649)
7 2k5e_A Uncharacterized protein 13.2 1.3E+02 0.0044 24.2 3.0 24 127-150 40-65 (73)
8 3vu7_H DNA repair protein REV1 11.4 1E+02 0.0035 27.6 2.0 59 109-170 11-69 (124)
9 3aa0_C 21MER peptide from leuc 11.3 65 0.0022 21.5 0.5 15 37-51 9-23 (26)
10 2a2f_X Exocyst complex compone 11.1 5.6E+02 0.019 26.1 7.7 94 139-236 2-119 (325)
No 1
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=27.75 E-value=1.4e+02 Score=32.01 Aligned_cols=96 Identities=19% Similarity=0.266 Sum_probs=56.7
Q ss_pred CCCCCHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhhccCCCCCCccchhcccccchhHHHHHHHHHHHhhChHHHH
Q 008110 199 LSHVPEDVYKMSVDWLNQRSFDALGSFVLWSLDSILADLASHQGTGKSSKKVVQQASSKSQVAIFVVLAMVLRRKPDVLI 278 (577)
Q Consensus 199 Ls~ip~~v~k~~i~~l~~~~~~~L~~Fv~~~L~~mltdL~~~~g~~kg~~~~~q~~~~~s~vG~~V~LqmIlr~~P~il~ 278 (577)
+...+.++++.++..|...... ......|+++.++.-|... |+ ... .- .-++|.-|++.+|+.-.
T Consensus 362 l~~~d~~~r~~~v~aI~~la~~-~~~~~~~~v~~Ll~ll~~~-~~-----~v~-------~e-~i~~l~~ii~~~p~~~~ 426 (591)
T 2vgl_B 362 ATEVDVDFVRKAVRAIGRCAIK-VEQSAERCVSTLLDLIQTK-VN-----YVV-------QE-AIVVIRDIFRKYPNKYE 426 (591)
T ss_dssp TTSSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTC-CH-----HHH-------HH-HHHHHHHHHHHSCSSCC
T ss_pred HhcCCHHHHHHHHHHHHHHHHh-ChhHHHHHHHHHHHHHccc-ch-----HHH-------HH-HHHHHHHHHHHCcchHH
Confidence 4556778888888888765543 3456789999988777542 21 111 11 12356667788887533
Q ss_pred hhchhhhcCC-cccCCCchhHHHHHhhhcccc
Q 008110 279 SLLPIKRENP-KYQGQDKLPVTAWIIAQTAQG 309 (577)
Q Consensus 279 ~~L~~l~~~s-~~q~~~k~lsilWaigQAg~~ 309 (577)
..++.+.+.- .-..+...-.++|++||=|..
T Consensus 427 ~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~ 458 (591)
T 2vgl_B 427 SIIATLCENLDSLDEPDARAAMIWIVGEYAER 458 (591)
T ss_dssp TTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHccccc
Confidence 3333332211 123344567889999996543
No 2
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=26.27 E-value=4.2e+02 Score=25.03 Aligned_cols=71 Identities=8% Similarity=0.174 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhccCchHHHHHHHHHHhhHHHHHHHHHHHHhhhhhcccCC
Q 008110 417 KQVAQHILTIAIKAAGEGIPDLSREASDIFIWALTQNPECYKQWDMLYLDNLEASIVVLRKLSDEWKEHSVKD 489 (577)
Q Consensus 417 kqv~qqiF~~~Lk~a~~~~~~l~kE~~~~~I~CLt~d~dC~k~Wr~lY~knl~~S~~LL~~L~~~W~~~s~Kl 489 (577)
|.....+++.+.+..++.|++.|.+++..++.+-..-......=...|.+++++ .+++.|..+|..+..+-
T Consensus 178 k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp--~~~k~le~~f~k~~~~~ 248 (278)
T 4ffb_C 178 QTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKP--IQVKDLHKLFAKVGDEP 248 (278)
T ss_dssp HHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCH--HHHHHHHHHHSCCCC--
T ss_pred hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCH--HHHHHHHHHHHhcCCCC
Confidence 444456777888888999999999999888776543322211112234555654 56788999998776553
No 3
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=23.55 E-value=91 Score=28.63 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=38.2
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhccCchHHHHHHHHHHhhHHHHHHHHHHHHhhhh
Q 008110 411 PGSKAMKQVAQHILTIAIKAAGEGIPDLSREASDIFIWALTQNPECYKQWDMLYLDNLEASIVVLRKLSDEWK 483 (577)
Q Consensus 411 p~s~a~kqv~qqiF~~~Lk~a~~~~~~l~kE~~~~~I~CLt~d~dC~k~Wr~lY~knl~~S~~LL~~L~~~W~ 483 (577)
|-++.|.++++..|. .+--.|+.+.+--+|..+. +.||..|+- +.||.||+.+=.
T Consensus 39 P~~~~m~eIa~~T~~----------~~~~~eIm~~l~kRL~d~~---k~WR~vyKa-----L~lleyLl~nGs 93 (148)
T 1inz_A 39 PSSSLMSEIADLTYN----------VVAFSEIMSMIWKRLNDHG---KNWRHVYKA-----MTLMEYLIKTGS 93 (148)
T ss_dssp CCSCHHHHHHHHHTS----------SHHHHHHHHHHHHGGGCCS---SCTHHHHHH-----HHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHhCC----------HhhHHHHHHHHHHHHccCC---cchhHhhHH-----HHHHHHHHHhCC
Confidence 446667777665442 2344567778888887544 679988885 889999988733
No 4
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=19.91 E-value=1.1e+02 Score=27.79 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=36.2
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhccCchHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 008110 411 PGSKAMKQVAQHILTIAIKAAGEGIPDLSREASDIFIWALTQNPECYKQWDMLYLDNLEASIVVLRKLSDE 481 (577)
Q Consensus 411 p~s~a~kqv~qqiF~~~Lk~a~~~~~~l~kE~~~~~I~CLt~d~dC~k~Wr~lY~knl~~S~~LL~~L~~~ 481 (577)
|-++.|.++++..|. .+--.|+.+++--+|..+. +.||..|+ |+.||.||+.+
T Consensus 21 P~~~~m~eIa~~T~~----------~~~~~~Im~~l~kRL~d~~---k~Wr~vyK-----aL~lleyLl~n 73 (144)
T 1eyh_A 21 PSSSLMSEIADLTYN----------VVAFSEIMSMIWKRLNDHG---KNWRHVYK-----AMTLMEYLIKT 73 (144)
T ss_dssp CCHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHSCCG---GGHHHHHH-----HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC----------HhhHHHHHHHHHHHHccCC---cchHHHhH-----HHHHHHHHHHh
Confidence 446666666554332 2334566777788887544 68999998 58899999877
No 5
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=17.58 E-value=97 Score=29.37 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=37.4
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhccCchHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q 008110 411 PGSKAMKQVAQHILTIAIKAAGEGIPDLSREASDIFIWALTQNPECYKQWDMLYLDNLEASIVVLRKLSDEWKE 484 (577)
Q Consensus 411 p~s~a~kqv~qqiF~~~Lk~a~~~~~~l~kE~~~~~I~CLt~d~dC~k~Wr~lY~knl~~S~~LL~~L~~~W~~ 484 (577)
|-++.|.++++..|. .+--.|+.+++..+|..+. -+.||..|+ |+.||.||+.+=.+
T Consensus 50 Ps~~~m~eIa~~T~~----------~~~~~~Im~~L~kRl~~~~--~k~WR~vyK-----aL~LLeYLl~nGse 106 (176)
T 1xgw_A 50 PSGQLMGEIAKATFM----------YEQFPELMNMLWSRMLKDN--KKNWRRVYK-----SLLLLAYLIRNGSE 106 (176)
T ss_dssp CCHHHHHHHHHHTTC----------TTTHHHHHHHHHHHHHSSC--TTCHHHHHH-----HHHHHHHHHHHSCH
T ss_pred CCHHHHHHHHHHhcC----------hhhHHHHHHHHHHHHhccC--CchhHHHHH-----HHHHHHHHHHhCCH
Confidence 445556666554432 2334677777778865543 268999998 58899999876543
No 6
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=13.98 E-value=7.1e+02 Score=28.07 Aligned_cols=117 Identities=11% Similarity=0.051 Sum_probs=80.6
Q ss_pred ccccc-CCCCCCHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhhccCCCCCCccchhcccccchhHHHHHHHHHHHh
Q 008110 193 KMVDI-PLSHVPEDVYKMSVDWLNQRSFDALGSFVLWSLDSILADLASHQGTGKSSKKVVQQASSKSQVAIFVVLAMVLR 271 (577)
Q Consensus 193 k~~dy-PLs~ip~~v~k~~i~~l~~~~~~~L~~Fv~~~L~~mltdL~~~~g~~kg~~~~~q~~~~~s~vG~~V~LqmIlr 271 (577)
....+ |.-..++.+.+.-+.||..... +...|..-|++.|.+.+..... ..+-+=-+|+-|++
T Consensus 140 aIL~~~~W~~r~~~~v~~Y~~FL~~LvS-a~~~yl~~vl~mLV~~F~~~~~---------------~~~~~H~~L~~Il~ 203 (649)
T 3tj1_A 140 SIINFEKWWELPPHTLSKYIYFIKILCS-SIPKWWQDVSMILVSCFILPIK---------------QTVCHHDMLKYFLR 203 (649)
T ss_dssp HHHTCTTGGGSCHHHHHHHHHHHHHHHH-HCGGGHHHHHHHHHHGGGSCHH---------------HHHHHHHHHHHHHH
T ss_pred HHhCCchhccCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhccCCCc---------------ccHHHHHHHHHHHH
Confidence 45667 7777888999999999988854 4567888899999999876311 12234568999999
Q ss_pred hChHHHHhhchhhhcCC-cccCCCchhHHHHHhhhccccchhhHHHHHHHHhhhcccCCCCCCchhHHHHHHHH-HHH
Q 008110 272 RKPDVLISLLPIKRENP-KYQGQDKLPVTAWIIAQTAQGDLAVGLYMWVRVLLPMLSGKSSCNPQARDSILQLV-ERI 347 (577)
Q Consensus 272 ~~P~il~~~L~~l~~~s-~~q~~~k~lsilWaigQAg~~DL~vGL~vW~~imLPvL~~Ks~~sp~s~dlVlqyl-ErI 347 (577)
.-|..-...++.+..+. +... ....+-.+.++||=+.+ |.|.-+.-|+++| ||+
T Consensus 204 lvP~s~~~L~~iL~~~FP~~~~------------------s~~~~~~Yv~NLLrl~~----Y~PeL~~~Il~LIierl 259 (649)
T 3tj1_A 204 MIPSSMGFIDTYLAKFFPNKND------------------TRRKLVNYTSNLLKLRG----YCSELGFQIWSLLIEKI 259 (649)
T ss_dssp HCGGGHHHHHHHHHHTCCCTTS------------------CHHHHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhCCCCCC------------------chhHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHH
Confidence 99976666666554432 2222 22345578889988885 8888876665543 444
No 7
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=13.20 E-value=1.3e+02 Score=24.23 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=19.8
Q ss_pred cccHHHHHhc--CChhHHHHHHHHhh
Q 008110 127 KVTVSEAAAR--IDAGDLGAFLVDIT 150 (577)
Q Consensus 127 K~sLeeAa~~--Id~~dL~~~L~~v~ 150 (577)
..||++|+.. ||+++|-+.|.+..
T Consensus 40 ~~tL~~Aa~~~gid~~~ll~~Ln~~~ 65 (73)
T 2k5e_A 40 NESLEQGANAHGLNVEDILRDLNALA 65 (73)
T ss_dssp GSBHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5699999987 89999888887654
No 8
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=11.39 E-value=1e+02 Score=27.62 Aligned_cols=59 Identities=8% Similarity=0.206 Sum_probs=0.0
Q ss_pred hhhHHhhhccCCCCCCCCcccHHHHHhcCChhHHHHHHHHhhhccCcchHHHHHHHHHHHhh
Q 008110 109 SAAVVEVKKVKQKKPKKPKVTVSEAAARIDAGDLGAFLVDITGSYEKQEDIQLMRFADYFGR 170 (577)
Q Consensus 109 ~~~~~e~kK~k~kk~kkPK~sLeeAa~~Id~~dL~~~L~~v~~sfp~~p~i~L~~~AdYln~ 170 (577)
...+...+-...+++++|+-++..| .+.+|++..|.+--+++.+--..-+-.|+.||..
T Consensus 11 ~~~~~~~~~~~~~~~~p~~P~f~g~---t~l~evK~lL~~Wv~s~~~P~~~DV~~l~~yL~~ 69 (124)
T 3vu7_H 11 GSGLSSLQSDPAGCVRPPAPNLAGA---VEFNDVKTLLREWITTISDPMEEDILQVVKYCTD 69 (124)
T ss_dssp -------------------CCCSSS---CSHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred CCCccccCcccCCCCCCCCCccCCC---cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
No 9
>3aa0_C 21MER peptide from leucine-rich repeat-containing 16A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Mus musculus}
Probab=11.29 E-value=65 Score=21.48 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=11.7
Q ss_pred ccccccCCCCCCCCC
Q 008110 37 YKKRHSKQPNSDNSL 51 (577)
Q Consensus 37 ~~k~~r~~~~~~~~~ 51 (577)
.|||.+||+|..+..
T Consensus 9 rpkr~kkqqps~~tv 23 (26)
T 3aa0_C 9 RPKRNKKQQPTQAXX 23 (26)
T ss_pred CcchhhccCCccccc
Confidence 589999999876543
No 10
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=11.14 E-value=5.6e+02 Score=26.11 Aligned_cols=94 Identities=17% Similarity=0.315 Sum_probs=58.0
Q ss_pred hhHHHHHHHHhhhccCcchHHHHHHHHHHHhhhcccCCC---------------CCCcccccccccccccccccCCCCCC
Q 008110 139 AGDLGAFLVDITGSYEKQEDIQLMRFADYFGRAFASVSS---------------SQFPWLKTFRESTVAKMVDIPLSHVP 203 (577)
Q Consensus 139 ~~dL~~~L~~v~~sfp~~p~i~L~~~AdYln~~ls~v~~---------------~~~pw~~mf~e~~l~k~~dyPLs~ip 203 (577)
++.|.++|.++.++|- .+++.+|..-|...++..+- ..|||.+-..+. ..-|.-.|.|.+=
T Consensus 2 V~~L~~~L~~l~d~Y~---elLl~~~~~~f~~il~~D~y~Pm~V~~~eey~~v~~~~~~~~~~~~~-~~fP~~lPFS~~v 77 (325)
T 2a2f_X 2 VNILWELLHNMRDHYN---EVLLQRWVHVFREILDKEQFLPMVVQNTEEYECIIERFPFHSEQLEN-APFPKKFPFSRMV 77 (325)
T ss_dssp -CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTTCBCCCCCHHHHHHHHTTSCCCCCCCC-----CCCSSSBTHH
T ss_pred chHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCeeeeCCHHHHHHHHhcCCCCCccccc-CCCCcccCccHHH
Confidence 4578999999999997 78999999999886664321 346776543221 1124555555554
Q ss_pred HHHHHHHHHHH-------hh--cChhhHHHHHHHHHHHHHHH
Q 008110 204 EDVYKMSVDWL-------NQ--RSFDALGSFVLWSLDSILAD 236 (577)
Q Consensus 204 ~~v~k~~i~~l-------~~--~~~~~L~~Fv~~~L~~mltd 236 (577)
..+|..+.+|| +. .....+...+.-++|.+|++
T Consensus 78 P~~c~~ir~fi~~~~~F~~~~~~~~~eidd~lrks~d~LL~~ 119 (325)
T 2a2f_X 78 PEVYHQAKEFMYACMKFAEELTLSPNEVAAMVRKAANLLLTR 119 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 44444444444 44 34456667777777777765
Done!