Query 008110
Match_columns 577
No_of_seqs 92 out of 94
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 18:21:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008110.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008110hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vglb_ a.118.1.10 (B:) Adapti 26.4 23 0.0017 35.4 4.2 96 196-307 357-453 (579)
2 d1tx4a_ a.116.1.1 (A:) p50 Rho 23.8 1.1E+02 0.0083 25.7 8.0 102 366-485 92-195 (196)
3 d1zavu1 a.108.1.1 (U:1-30) Rib 16.4 47 0.0034 21.3 2.5 24 130-153 6-29 (30)
4 d2bl8a1 a.29.8.2 (A:4-103) Ent 13.1 57 0.0041 26.6 2.9 34 138-171 20-58 (100)
5 d1axda1 a.45.1.1 (A:81-210) Cl 12.3 78 0.0057 24.4 3.6 54 294-349 10-63 (129)
6 d1gnwa1 a.45.1.1 (A:86-211) Cl 11.1 1.1E+02 0.0081 24.2 4.2 47 300-348 16-69 (126)
7 d1x2ga1 d.224.1.3 (A:247-337) 11.0 1.8E+02 0.013 22.3 5.3 43 129-172 46-90 (91)
8 d1m15a1 a.83.1.1 (A:2-95) Argi 10.1 1.2E+02 0.0084 24.2 3.8 76 391-469 5-86 (94)
9 d1qgta_ a.62.1.1 (A:) Hepatiti 9.2 95 0.0069 26.0 3.0 34 315-348 59-93 (142)
10 d2vgla_ a.118.1.10 (A:) Adapti 8.7 2.1E+02 0.015 27.9 6.1 48 422-469 179-226 (584)
No 1
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.41 E-value=23 Score=35.44 Aligned_cols=96 Identities=19% Similarity=0.262 Sum_probs=60.7
Q ss_pred ccCCCCCCHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhhccCCCCCCccchhcccccchhHHHHHHHHHHHhhChH
Q 008110 196 DIPLSHVPEDVYKMSVDWLNQRSFDALGSFVLWSLDSILADLASHQGTGKSSKKVVQQASSKSQVAIFVVLAMVLRRKPD 275 (577)
Q Consensus 196 dyPLs~ip~~v~k~~i~~l~~~~~~~L~~Fv~~~L~~mltdL~~~~g~~kg~~~~~q~~~~~s~vG~~V~LqmIlr~~P~ 275 (577)
+| +...+.++++.+++-|.+... .......||++.++.-+... +. . .....+ +++.-|+|..|+
T Consensus 357 ~y-~~~~d~~~~~~ai~aI~~la~-~~~~~~~~~i~~Ll~ll~~~-~~-----~-------v~~e~i-~~i~~i~~~~p~ 420 (579)
T d2vglb_ 357 EY-ATEVDVDFVRKAVRAIGRCAI-KVEQSAERCVSTLLDLIQTK-VN-----Y-------VVQEAI-VVIRDIFRKYPN 420 (579)
T ss_dssp HH-TTSSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTC-CH-----H-------HHHHHH-HHHHHHHHHSCS
T ss_pred HH-hhcCCHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHhCC-ch-----h-------HHHHHH-HHHHHHHHhChH
Confidence 44 566777888888888877654 45667899999988777552 10 0 112223 345566789997
Q ss_pred HHHhhchhhhcC-CcccCCCchhHHHHHhhhcc
Q 008110 276 VLISLLPIKREN-PKYQGQDKLPVTAWIIAQTA 307 (577)
Q Consensus 276 il~~~L~~l~~~-s~~q~~~k~lsilWaigQAg 307 (577)
.-...++++... ..-..+...-.++|.+|+=|
T Consensus 421 ~~~~ii~~L~~~l~~~~~~~~~~~~iwilGEy~ 453 (579)
T d2vglb_ 421 KYESIIATLCENLDSLDEPDARAAMIWIVGEYA 453 (579)
T ss_dssp SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCcc
Confidence 655555554332 12344566777899999854
No 2
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.78 E-value=1.1e+02 Score=25.75 Aligned_cols=102 Identities=15% Similarity=0.086 Sum_probs=54.6
Q ss_pred CcCCCcchHHHHHHhcCCCCcchhhHHHHHHHhchhhhHhHhcCCCCChhHHHHHHHHHHHHHHHhcCCC-hhhHHHHHH
Q 008110 366 ERLVPPSALEVLMRVTFPAPSLRIKATERFEAIYPILKEVALAGSPGSKAMKQVAQHILTIAIKAAGEGI-PDLSREASD 444 (577)
Q Consensus 366 ~~li~p~~f~iL~~~tfP~sS~r~kater~eaiYP~LKelalag~p~s~a~kqv~qqiF~~~Lk~a~~~~-~~l~kE~~~ 444 (577)
+.|+|...++.+..+.--..+.+..+..++....|... ..+.+.++.++-+.+...+ -.|.-+.+.
T Consensus 92 ~pLi~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~~-------------~~~L~~l~~~l~~i~~~~~~nkM~~~nLa 158 (196)
T d1tx4a_ 92 EPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEEN-------------YQVLRFLTAFLVQISAHSDQNKMTNTNLA 158 (196)
T ss_dssp SCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHH-------------HHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred CCcchHHHHHHHHHHHhcChHHHHHHHHHHHHHCCHHH-------------HHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 46888888888887642222334444444443333211 2233455666555554222 123333333
Q ss_pred -HHHHhhccCchHHHHHHHHHHhhHHHHHHHHHHHHhhhhhc
Q 008110 445 -IFIWALTQNPECYKQWDMLYLDNLEASIVVLRKLSDEWKEH 485 (577)
Q Consensus 445 -~~I~CLt~d~dC~k~Wr~lY~knl~~S~~LL~~L~~~W~~~ 485 (577)
++-=||...++ ...-.+++.....++++|.++|+++
T Consensus 159 ~~f~P~l~~~~~-----~~~~~~~~~~~~~~~~~LI~~~~~i 195 (196)
T d1tx4a_ 159 VVFGPNLLWAKD-----AAITLKAINPINTFTKFLLDHQGEL 195 (196)
T ss_dssp HHHHHHHCCCSS-----HHHHHHTHHHHHHHHHHHHHTHHHH
T ss_pred HHHhhhhcCCCC-----cchhHHHHHHHHHHHHHHHHhHHhh
Confidence 33346666553 2223456667778999999998764
No 3
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=16.40 E-value=47 Score=21.35 Aligned_cols=24 Identities=13% Similarity=0.422 Sum_probs=20.2
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcc
Q 008110 130 VSEAAARIDAGDLGAFLVDITGSY 153 (577)
Q Consensus 130 LeeAa~~Id~~dL~~~L~~v~~sf 153 (577)
+-+|+.++++++|+.......+.|
T Consensus 6 iv~aiekltvaelaelvk~ledkf 29 (30)
T d1zavu1 6 IIEAIEKLTVSELAELVKKLEDKF 29 (30)
T ss_dssp HHHHHHHSBHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhc
Confidence 447889999999999988888776
No 4
>d2bl8a1 a.29.8.2 (A:4-103) Enterocine A immunity protein, EntA-Im {Enterococcus faecium [TaxId: 1352]}
Probab=13.11 E-value=57 Score=26.57 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=27.9
Q ss_pred ChhHHHHHHHHhhhccCc-----chHHHHHHHHHHHhhh
Q 008110 138 DAGDLGAFLVDITGSYEK-----QEDIQLMRFADYFGRA 171 (577)
Q Consensus 138 d~~dL~~~L~~v~~sfp~-----~p~i~L~~~AdYln~~ 171 (577)
+..|+.+.|.+|...|++ +|+-|..|++.|+..-
T Consensus 20 ~y~dI~dvL~~V~~K~d~~k~~~~p~al~nrLV~YI~~~ 58 (100)
T d2bl8a1 20 KYSDILEVLQKVYLKLEKQKYELDPSPLINRLVNYLYFT 58 (100)
T ss_dssp GGHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhhccccCChHHHHHHHHHHHHHH
Confidence 367999999999999987 8999999999999543
No 5
>d1axda1 a.45.1.1 (A:81-210) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}
Probab=12.31 E-value=78 Score=24.41 Aligned_cols=54 Identities=22% Similarity=0.428 Sum_probs=40.5
Q ss_pred CchhHHHHHhhhccccchhhHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhc
Q 008110 294 DKLPVTAWIIAQTAQGDLAVGLYMWVRVLLPMLSGKSSCNPQARDSILQLVERILS 349 (577)
Q Consensus 294 ~k~lsilWaigQAg~~DL~vGL~vW~~imLPvL~~Ks~~sp~s~dlVlqylErILs 349 (577)
.+..+-.|+--+.+.-...+|-.++..++.|..+.+. ++..++-.++-++++|.
T Consensus 10 erA~v~~Wl~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~l~ 63 (129)
T d1axda1 10 EAAMVDVWIEVEANQYTAALNPILFQVLISPMLGGTT--DQKVVDENLEKLKKVLE 63 (129)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHTHHHHHTCCC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHhhcccccCCC--CHHHHHHHHHHHHHHHH
Confidence 3456778998899889999999999999999887554 56666555555555553
No 6
>d1gnwa1 a.45.1.1 (A:86-211) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=11.13 E-value=1.1e+02 Score=24.18 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=34.7
Q ss_pred HHHhhhccccchhhHHHHHHHHhhhcccCCCCCCchhHH-------HHHHHHHHHh
Q 008110 300 AWIIAQTAQGDLAVGLYMWVRVLLPMLSGKSSCNPQARD-------SILQLVERIL 348 (577)
Q Consensus 300 lWaigQAg~~DL~vGL~vW~~imLPvL~~Ks~~sp~s~d-------lVlqylErIL 348 (577)
-||--++.+-|+.++=.+|...+-|+.+... ++...+ -+++++|..|
T Consensus 16 ~~m~~e~~~f~p~~~~l~~~~~~~p~~G~~~--d~~~v~~~~~~l~~~l~~le~~L 69 (126)
T d1gnwa1 16 IGMQVEDHQFDPVASKLAFEQIFKSIYGLTT--DEAVVAEEEAKLAKVLDVYEARL 69 (126)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHTHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHhcccccCCCC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999998889999999875443 565443 4455555555
No 7
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.02 E-value=1.8e+02 Score=22.31 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=33.8
Q ss_pred cHHHHHhcC--ChhHHHHHHHHhhhccCcchHHHHHHHHHHHhhhc
Q 008110 129 TVSEAAARI--DAGDLGAFLVDITGSYEKQEDIQLMRFADYFGRAF 172 (577)
Q Consensus 129 sLeeAa~~I--d~~dL~~~L~~v~~sfp~~p~i~L~~~AdYln~~l 172 (577)
-|++++.-+ +.+++.+.|.++...||.. ...|.+|.++|-..+
T Consensus 46 ~le~~L~G~~y~~~~i~~~l~~~~~~~~~~-~~~l~e~~~WL~~~i 90 (91)
T d1x2ga1 46 ALAGRLQGCLYRADMLQQECEALLVDFPEQ-EKELRELSAWMAGAV 90 (91)
T ss_dssp HHHHHHTTCBSSHHHHHHHHHHTGGGCGGG-HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhhCHhH-HHHHHHHHHHHHHHh
Confidence 456666655 6699999999999999855 678899999986654
No 8
>d1m15a1 a.83.1.1 (A:2-95) Arginine kinase, N-domain {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
Probab=10.10 E-value=1.2e+02 Score=24.22 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=45.9
Q ss_pred HHHHHHHhchhhhHhHhcCCCCChhHHHHHHHHHHHHHHHhcCCChhhHHHHHHH------HHHhhccCchHHHHHHHHH
Q 008110 391 ATERFEAIYPILKEVALAGSPGSKAMKQVAQHILTIAIKAAGEGIPDLSREASDI------FIWALTQNPECYKQWDMLY 464 (577)
Q Consensus 391 ater~eaiYP~LKelalag~p~s~a~kqv~qqiF~~~Lk~a~~~~~~l~kE~~~~------~I~CLt~d~dC~k~Wr~lY 464 (577)
+.+++++.|+.|+ -+..-.|-+-|..++.+|..+=..-+...-.+.+.+-.+ -+-|..-|++||.++..++
T Consensus 5 ~~~~~~~~~~~l~---~~~~~~SLl~K~LT~ev~~~lk~k~T~~G~tl~~~I~sGv~n~ds~vGiyAgD~esY~vF~~lF 81 (94)
T d1m15a1 5 TLDKLEAGFKKLQ---EASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLF 81 (94)
T ss_dssp HHHHHHHHHHHHH---HCTTCCCHHHHHCCHHHHHHHTTCBCTTCCBHHHHHHHHHHCTTCSSCCCCSSSTHHHHTHHHH
T ss_pred HHHHHHHhHHHHh---ccccchHHHHHhCCHHHHHHHhcCCCCCCCcHHHHHHhcccCCCCCCceeeCCHHHHHHHHHHH
Confidence 4567888888775 344344555566788888876433333333344443222 2334555899999999888
Q ss_pred HhhHH
Q 008110 465 LDNLE 469 (577)
Q Consensus 465 ~knl~ 469 (577)
-..++
T Consensus 82 dpvI~ 86 (94)
T d1m15a1 82 DPIID 86 (94)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 9
>d1qgta_ a.62.1.1 (A:) Hepatitis B viral capsid (hbcag) {Hepatitis B virus [TaxId: 10407]}
Probab=9.17 E-value=95 Score=26.01 Aligned_cols=34 Identities=21% Similarity=0.498 Sum_probs=21.9
Q ss_pred HHHHHHHh-hhcccCCCCCCchhHHHHHHHHHHHh
Q 008110 315 LYMWVRVL-LPMLSGKSSCNPQARDSILQLVERIL 348 (577)
Q Consensus 315 L~vW~~im-LPvL~~Ks~~sp~s~dlVlqylErIL 348 (577)
+.+|-++| |..-.+.+--.|.+||+|+.|++.-+
T Consensus 59 ilCWgelm~latWvg~nled~~sr~lvv~yvn~nm 93 (142)
T d1qgta_ 59 ILCWGELMTLATWVGNNLEDPASRDLVVNYVNTNM 93 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHccCcCCHHHhHHhhhhccccc
Confidence 55666655 22222233258999999999998765
No 10
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.72 E-value=2.1e+02 Score=27.95 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhhccCchHHHHHHHHHHhhHH
Q 008110 422 HILTIAIKAAGEGIPDLSREASDIFIWALTQNPECYKQWDMLYLDNLE 469 (577)
Q Consensus 422 qiF~~~Lk~a~~~~~~l~kE~~~~~I~CLt~d~dC~k~Wr~lY~knl~ 469 (577)
++++.+.....+.+|....-++..+.++...+++.|+.|-..+...+.
T Consensus 179 ~~~~~L~~lL~D~d~~V~~aAl~ll~eI~~~~p~~~~~~~~~~i~~L~ 226 (584)
T d2vgla_ 179 DWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLS 226 (584)
T ss_dssp SCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 366777777777888888888888888888888877777666555543
Done!