Query 008112
Match_columns 577
No_of_seqs 214 out of 1634
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 19:36:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02623 pyruvate kinase 100.0 5E-136 1E-140 1117.6 59.2 573 2-577 3-579 (581)
2 PLN02762 pyruvate kinase compl 100.0 3E-133 6E-138 1088.0 57.4 466 107-577 24-508 (509)
3 PTZ00066 pyruvate kinase; Prov 100.0 8E-133 2E-137 1084.2 56.4 473 103-577 33-512 (513)
4 PRK09206 pyruvate kinase; Prov 100.0 2E-130 4E-135 1060.7 57.0 465 107-577 1-470 (470)
5 PRK06247 pyruvate kinase; Prov 100.0 2E-130 4E-135 1060.5 55.4 466 106-577 3-470 (476)
6 COG0469 PykF Pyruvate kinase [ 100.0 2E-130 3E-135 1055.8 54.8 470 105-577 2-477 (477)
7 PLN02461 Probable pyruvate kin 100.0 1E-129 3E-134 1059.9 55.3 464 106-577 19-510 (511)
8 PRK06354 pyruvate kinase; Prov 100.0 3E-128 6E-133 1070.2 57.2 469 105-577 5-478 (590)
9 PLN02765 pyruvate kinase 100.0 3E-128 7E-133 1049.1 56.7 462 107-577 26-524 (526)
10 cd00288 Pyruvate_Kinase Pyruva 100.0 4E-127 9E-132 1040.2 56.4 467 107-577 1-480 (480)
11 PRK05826 pyruvate kinase; Prov 100.0 1E-125 2E-130 1026.0 56.3 452 106-559 2-458 (465)
12 PTZ00300 pyruvate kinase; Prov 100.0 1E-119 3E-124 972.8 53.0 440 134-577 1-453 (454)
13 TIGR01064 pyruv_kin pyruvate k 100.0 7E-119 2E-123 978.2 54.0 465 108-574 1-473 (473)
14 KOG2323 Pyruvate kinase [Carbo 100.0 4E-118 9E-123 954.3 41.4 486 82-577 2-501 (501)
15 PF00224 PK: Pyruvate kinase, 100.0 5E-105 1E-109 841.2 28.8 338 107-445 1-345 (348)
16 PRK06739 pyruvate kinase; Vali 100.0 2E-103 4E-108 824.2 39.0 331 109-444 2-334 (352)
17 PRK14725 pyruvate kinase; Prov 100.0 1.8E-94 4E-99 790.0 39.5 354 84-445 115-600 (608)
18 PRK08187 pyruvate kinase; Vali 100.0 9E-93 2E-97 771.2 37.8 352 85-444 110-482 (493)
19 PF02887 PK_C: Pyruvate kinase 100.0 8.4E-28 1.8E-32 216.6 15.5 115 460-576 1-117 (117)
20 TIGR03239 GarL 2-dehydro-3-deo 99.7 1.8E-16 3.8E-21 161.1 12.0 136 271-420 66-235 (249)
21 PRK10558 alpha-dehydro-beta-de 99.7 2.4E-16 5.3E-21 160.7 11.7 137 270-420 72-242 (256)
22 PRK10128 2-keto-3-deoxy-L-rham 99.6 1.5E-15 3.2E-20 155.6 11.4 135 271-419 72-241 (267)
23 COG3836 HpcH 2,4-dihydroxyhept 99.6 4.9E-15 1.1E-19 146.7 12.6 136 270-419 70-240 (255)
24 TIGR02311 HpaI 2,4-dihydroxyhe 99.6 1.2E-14 2.7E-19 147.6 10.6 134 272-419 67-235 (249)
25 PF03328 HpcH_HpaI: HpcH/HpaI 99.4 1.7E-13 3.7E-18 136.3 6.6 102 277-379 73-189 (221)
26 TIGR01418 PEP_synth phosphoeno 99.2 4E-11 8.6E-16 139.4 13.0 148 274-440 611-782 (782)
27 PRK06464 phosphoenolpyruvate s 99.2 6E-11 1.3E-15 138.0 12.8 150 274-442 618-791 (795)
28 TIGR01588 citE citrate lyase, 99.2 6.1E-11 1.3E-15 123.0 10.0 134 275-414 71-220 (288)
29 TIGR01417 PTS_I_fam phosphoeno 99.1 4.4E-10 9.4E-15 126.5 11.9 134 271-415 365-525 (565)
30 PRK11177 phosphoenolpyruvate-p 99.0 3.5E-09 7.6E-14 119.4 12.0 134 271-415 366-526 (575)
31 COG2301 CitE Citrate lyase bet 98.5 9.5E-08 2E-12 98.8 6.0 161 275-441 66-245 (283)
32 cd00727 malate_synt_A Malate s 98.4 5.1E-06 1.1E-10 92.2 16.0 140 280-435 174-357 (511)
33 cd00480 malate_synt Malate syn 98.4 1.3E-05 2.7E-10 89.5 18.2 138 291-436 186-358 (511)
34 PRK09255 malate synthase; Vali 98.3 1.6E-05 3.6E-10 88.5 16.0 132 287-434 204-377 (531)
35 TIGR01344 malate_syn_A malate 98.3 9.2E-06 2E-10 90.1 13.5 127 281-414 176-345 (511)
36 PF02896 PEP-utilizers_C: PEP- 98.2 1.3E-05 2.9E-10 83.7 13.1 133 272-415 119-278 (293)
37 PLN02626 malate synthase 97.9 0.00022 4.8E-09 79.5 15.5 123 291-415 213-372 (551)
38 TIGR01828 pyru_phos_dikin pyru 96.9 0.0048 1E-07 73.2 11.2 134 271-415 669-850 (856)
39 PRK11061 fused phosphoenolpyru 96.9 0.0037 8E-08 73.3 9.7 117 288-415 549-692 (748)
40 PRK08649 inosine 5-monophospha 96.8 0.013 2.9E-07 63.3 12.2 121 278-414 143-284 (368)
41 PF00478 IMPDH: IMP dehydrogen 96.6 0.024 5.2E-07 60.9 12.8 122 275-414 106-239 (352)
42 COG1080 PtsA Phosphoenolpyruva 96.3 0.019 4.2E-07 64.6 10.1 123 282-415 378-527 (574)
43 cd00381 IMPDH IMPDH: The catal 96.3 0.072 1.6E-06 56.7 13.8 123 276-414 93-225 (325)
44 TIGR02751 PEPCase_arch phospho 95.9 0.031 6.8E-07 62.4 9.0 92 289-380 122-248 (506)
45 PRK09279 pyruvate phosphate di 95.7 0.046 9.9E-07 65.2 10.2 135 270-415 674-856 (879)
46 TIGR01304 IMP_DH_rel_2 IMP deh 95.6 0.086 1.9E-06 57.1 10.9 121 279-415 145-284 (369)
47 PRK13655 phosphoenolpyruvate c 95.4 0.069 1.5E-06 59.6 9.3 93 288-380 120-240 (494)
48 PTZ00314 inosine-5'-monophosph 94.7 0.44 9.6E-06 53.6 13.5 123 276-415 240-373 (495)
49 PRK00009 phosphoenolpyruvate c 94.4 0.17 3.7E-06 60.7 9.9 150 289-438 486-665 (911)
50 COG3605 PtsP Signal transducti 94.4 0.24 5.2E-06 56.1 10.3 131 292-439 561-718 (756)
51 PLN02274 inosine-5'-monophosph 94.3 0.64 1.4E-05 52.5 13.6 125 275-415 246-380 (505)
52 PRK07807 inosine 5-monophospha 94.1 0.62 1.3E-05 52.3 12.9 129 273-415 223-359 (479)
53 TIGR03151 enACPred_II putative 93.7 1.1 2.3E-05 47.5 13.2 114 278-415 76-190 (307)
54 TIGR01302 IMP_dehydrog inosine 93.6 0.98 2.1E-05 50.2 13.2 126 275-415 222-356 (450)
55 PRK06843 inosine 5-monophospha 93.5 0.93 2E-05 49.8 12.6 125 275-415 151-285 (404)
56 PRK05096 guanosine 5'-monophos 93.4 1.3 2.9E-05 47.4 13.2 126 275-415 106-242 (346)
57 TIGR01305 GMP_reduct_1 guanosi 93.4 1.5 3.3E-05 47.0 13.5 126 275-415 105-241 (343)
58 PRK13125 trpA tryptophan synth 92.8 5.8 0.00012 40.4 16.5 116 280-415 92-214 (244)
59 cd00958 DhnA Class I fructose- 92.7 2.2 4.7E-05 42.8 13.1 74 275-353 141-221 (235)
60 cd03174 DRE_TIM_metallolyase D 92.3 8.8 0.00019 38.7 17.1 155 275-439 17-189 (265)
61 PTZ00398 phosphoenolpyruvate c 92.2 0.66 1.4E-05 56.2 10.0 147 291-437 547-721 (974)
62 PTZ00170 D-ribulose-5-phosphat 92.0 2.7 5.9E-05 42.5 12.8 150 269-437 68-223 (228)
63 cd04740 DHOD_1B_like Dihydroor 92.0 7.6 0.00016 40.3 16.5 121 282-417 108-262 (296)
64 PRK01130 N-acetylmannosamine-6 91.9 3.8 8.3E-05 40.7 13.6 135 278-434 77-218 (221)
65 cd04730 NPD_like 2-Nitropropan 91.7 3.5 7.5E-05 41.1 13.2 116 277-415 68-185 (236)
66 cd00429 RPE Ribulose-5-phospha 91.3 5.3 0.00012 38.7 13.7 134 280-431 71-210 (211)
67 PRK07107 inosine 5-monophospha 91.2 2.1 4.5E-05 48.4 12.1 123 279-415 244-381 (502)
68 COG0574 PpsA Phosphoenolpyruva 91.2 1.1 2.3E-05 53.1 10.1 112 292-415 597-723 (740)
69 PRK08883 ribulose-phosphate 3- 91.2 5.8 0.00012 40.1 14.1 145 273-437 65-217 (220)
70 cd04726 KGPDC_HPS 3-Keto-L-gul 91.2 8.3 0.00018 37.4 14.9 131 280-429 68-200 (202)
71 TIGR01306 GMP_reduct_2 guanosi 90.9 2.7 5.8E-05 45.0 11.8 126 274-415 91-227 (321)
72 PRK05458 guanosine 5'-monophos 90.4 4.4 9.6E-05 43.4 13.1 126 275-415 95-230 (326)
73 PRK08745 ribulose-phosphate 3- 89.9 11 0.00023 38.3 14.8 138 280-437 76-221 (223)
74 TIGR01949 AroFGH_arch predicte 89.9 6.2 0.00013 40.4 13.3 65 282-351 162-232 (258)
75 PF01959 DHQS: 3-dehydroquinat 89.8 4.6 0.0001 43.6 12.5 201 279-509 15-274 (354)
76 PRK09722 allulose-6-phosphate 89.6 18 0.00039 36.9 16.2 143 279-439 72-223 (229)
77 PRK02290 3-dehydroquinate synt 89.5 5.1 0.00011 43.1 12.5 204 276-509 13-264 (344)
78 cd04722 TIM_phosphate_binding 89.5 7.2 0.00016 36.4 12.5 116 282-415 77-199 (200)
79 TIGR01303 IMP_DH_rel_1 IMP deh 89.5 6 0.00013 44.5 13.7 124 274-415 222-357 (475)
80 cd02940 DHPD_FMN Dihydropyrimi 89.5 7.4 0.00016 40.8 13.8 124 277-415 113-281 (299)
81 PRK05567 inosine 5'-monophosph 89.0 6.8 0.00015 44.0 13.9 124 277-415 228-360 (486)
82 PRK00286 xseA exodeoxyribonucl 89.0 20 0.00042 39.7 17.3 207 151-395 10-251 (438)
83 PRK05581 ribulose-phosphate 3- 88.8 19 0.00042 35.3 15.6 139 280-434 75-217 (220)
84 PLN02334 ribulose-phosphate 3- 88.8 15 0.00032 37.0 14.8 152 269-438 68-225 (229)
85 PRK13813 orotidine 5'-phosphat 88.7 2.6 5.6E-05 41.7 9.3 132 283-437 74-214 (215)
86 cd02810 DHOD_DHPD_FMN Dihydroo 88.3 11 0.00023 39.0 13.9 123 280-415 115-272 (289)
87 cd04729 NanE N-acetylmannosami 88.2 6 0.00013 39.3 11.5 118 278-415 81-206 (219)
88 TIGR01163 rpe ribulose-phospha 88.1 17 0.00038 35.2 14.5 134 280-430 70-208 (210)
89 cd00945 Aldolase_Class_I Class 87.9 15 0.00032 34.8 13.7 119 280-415 17-149 (201)
90 PRK08318 dihydropyrimidine deh 87.8 11 0.00024 41.4 14.2 124 277-415 113-282 (420)
91 PRK00694 4-hydroxy-3-methylbut 87.7 21 0.00045 41.1 16.2 161 277-442 46-231 (606)
92 PF14010 PEPcase_2: Phosphoeno 87.6 0.84 1.8E-05 51.1 5.4 91 288-378 119-244 (491)
93 COG2352 Ppc Phosphoenolpyruvat 87.6 1.3 2.8E-05 52.2 7.1 121 256-378 447-600 (910)
94 CHL00200 trpA tryptophan synth 87.6 15 0.00033 38.1 14.4 121 280-415 110-231 (263)
95 PF00311 PEPcase: Phosphoenolp 87.4 1.1 2.5E-05 53.2 6.7 91 290-380 364-482 (794)
96 cd00331 IGPS Indole-3-glycerol 87.4 15 0.00032 36.4 13.7 127 280-429 85-215 (217)
97 cd07944 DRE_TIM_HOA_like 4-hyd 87.3 39 0.00084 35.0 17.8 149 274-439 17-181 (266)
98 PRK05718 keto-hydroxyglutarate 87.0 4.7 0.0001 40.5 9.9 108 292-414 17-134 (212)
99 TIGR02090 LEU1_arch isopropylm 86.8 33 0.00072 37.1 17.0 155 274-438 19-183 (363)
100 cd04732 HisA HisA. Phosphorib 86.7 16 0.00035 36.2 13.7 131 277-425 83-229 (234)
101 PRK02048 4-hydroxy-3-methylbut 86.7 17 0.00038 41.9 15.1 154 277-436 42-224 (611)
102 cd00452 KDPG_aldolase KDPG and 86.4 17 0.00036 35.5 13.3 104 279-415 19-124 (190)
103 PRK15452 putative protease; Pr 86.3 5.5 0.00012 44.4 11.0 117 276-418 10-144 (443)
104 PRK11858 aksA trans-homoaconit 86.3 46 0.00099 36.3 17.8 155 274-438 23-187 (378)
105 cd00640 Trp-synth-beta_II Tryp 86.1 36 0.00078 34.0 16.0 118 364-505 63-188 (244)
106 cd00958 DhnA Class I fructose- 86.1 21 0.00046 35.6 14.2 142 272-437 16-177 (235)
107 PLN02591 tryptophan synthase 85.9 22 0.00047 36.7 14.3 119 280-415 97-218 (250)
108 PRK07695 transcriptional regul 85.7 16 0.00036 35.7 12.9 129 282-436 66-198 (201)
109 PRK07565 dihydroorotate dehydr 85.7 13 0.00029 39.5 13.2 143 280-443 118-291 (334)
110 cd07939 DRE_TIM_NifV Streptomy 85.4 29 0.00063 35.5 15.0 154 274-438 17-181 (259)
111 PRK13307 bifunctional formalde 85.4 15 0.00033 40.4 13.5 132 282-435 243-378 (391)
112 cd04724 Tryptophan_synthase_al 85.2 16 0.00036 37.1 13.0 99 270-380 9-135 (242)
113 TIGR03128 RuMP_HxlA 3-hexulose 85.2 39 0.00085 32.9 16.3 136 281-434 68-205 (206)
114 cd07945 DRE_TIM_CMS Leptospira 84.0 21 0.00046 37.3 13.5 167 259-438 6-189 (280)
115 KOG2550 IMP dehydrogenase/GMP 83.8 6.7 0.00015 43.1 9.7 126 275-415 249-383 (503)
116 cd07948 DRE_TIM_HCS Saccharomy 83.7 55 0.0012 33.9 16.2 165 258-437 8-182 (262)
117 PRK00915 2-isopropylmalate syn 83.6 58 0.0013 37.0 17.7 155 274-438 23-191 (513)
118 COG0826 Collagenase and relate 83.4 17 0.00038 39.2 12.8 119 275-419 12-148 (347)
119 PF03102 NeuB: NeuB family; I 83.3 11 0.00025 38.6 10.8 99 300-425 54-154 (241)
120 PF04551 GcpE: GcpE protein; 83.1 6.8 0.00015 42.3 9.4 252 279-558 34-306 (359)
121 PRK05581 ribulose-phosphate 3- 83.1 33 0.00072 33.6 13.9 132 279-437 19-163 (220)
122 PRK09389 (R)-citramalate synth 82.9 42 0.0009 38.0 16.1 153 275-437 22-184 (488)
123 PRK13210 putative L-xylulose 5 82.9 57 0.0012 33.1 15.9 133 279-418 19-183 (284)
124 PRK06015 keto-hydroxyglutarate 82.4 7.2 0.00016 39.0 8.8 107 294-415 8-124 (201)
125 PRK15447 putative protease; Pr 82.3 11 0.00023 39.8 10.6 118 276-419 14-142 (301)
126 PRK07028 bifunctional hexulose 82.3 42 0.0009 37.0 15.6 137 281-436 73-211 (430)
127 PLN02746 hydroxymethylglutaryl 82.2 45 0.00098 36.1 15.3 166 258-438 54-239 (347)
128 PLN02925 4-hydroxy-3-methylbut 81.7 32 0.00069 40.5 14.6 159 277-440 111-294 (733)
129 PRK08385 nicotinate-nucleotide 81.4 6.7 0.00015 41.1 8.5 66 278-346 191-259 (278)
130 PRK06512 thiamine-phosphate py 81.3 28 0.00061 35.1 12.7 133 282-436 80-213 (221)
131 PRK08005 epimerase; Validated 81.0 50 0.0011 33.2 14.3 136 274-431 66-207 (210)
132 PRK00043 thiE thiamine-phospha 80.8 28 0.0006 33.8 12.3 131 281-438 73-211 (212)
133 TIGR00612 ispG_gcpE 1-hydroxy- 80.7 19 0.0004 38.9 11.5 242 282-557 40-296 (346)
134 PRK04180 pyridoxal biosynthesi 80.6 27 0.00059 36.9 12.5 116 295-442 57-174 (293)
135 TIGR00262 trpA tryptophan synt 80.6 34 0.00073 35.3 13.3 118 280-415 106-227 (256)
136 PRK07259 dihydroorotate dehydr 80.6 43 0.00093 34.9 14.3 139 283-442 111-284 (301)
137 PF03060 NMO: Nitronate monoox 80.5 24 0.00051 37.6 12.5 113 278-414 102-218 (330)
138 TIGR00237 xseA exodeoxyribonuc 80.3 46 0.001 37.0 15.0 160 195-380 36-225 (432)
139 PRK04302 triosephosphate isome 80.2 41 0.00089 33.6 13.5 133 282-431 78-218 (223)
140 PLN02826 dihydroorotate dehydr 80.2 75 0.0016 35.2 16.5 160 260-442 189-392 (409)
141 TIGR00007 phosphoribosylformim 80.1 24 0.00052 35.1 11.8 119 276-416 81-219 (230)
142 PRK08227 autoinducer 2 aldolas 79.9 20 0.00044 37.3 11.4 139 333-492 48-189 (264)
143 PF00478 IMPDH: IMP dehydrogen 79.4 4.2 9.1E-05 44.0 6.4 51 108-158 95-145 (352)
144 TIGR01037 pyrD_sub1_fam dihydr 79.1 66 0.0014 33.4 15.1 123 299-442 140-284 (300)
145 PRK08999 hypothetical protein; 78.7 38 0.00082 35.3 13.2 42 123-164 147-188 (312)
146 cd04727 pdxS PdxS is a subunit 78.7 75 0.0016 33.5 15.0 131 280-442 19-165 (283)
147 cd02803 OYE_like_FMN_family Ol 78.6 41 0.00088 35.3 13.5 132 272-415 129-311 (327)
148 PRK07226 fructose-bisphosphate 78.4 86 0.0019 32.3 16.8 97 272-379 34-144 (267)
149 TIGR01163 rpe ribulose-phospha 78.4 67 0.0015 31.1 15.4 137 279-439 14-160 (210)
150 PRK00278 trpC indole-3-glycero 78.4 66 0.0014 33.2 14.6 131 280-431 124-256 (260)
151 PRK08091 ribulose-phosphate 3- 78.2 81 0.0018 32.2 14.9 136 279-434 81-226 (228)
152 TIGR00977 LeuA_rel 2-isopropyl 77.9 44 0.00094 38.2 14.2 171 259-439 10-197 (526)
153 PF01791 DeoC: DeoC/LacD famil 77.8 15 0.00032 37.1 9.5 145 279-439 22-189 (236)
154 PRK06552 keto-hydroxyglutarate 77.6 20 0.00043 36.1 10.2 108 292-414 15-135 (213)
155 PRK05692 hydroxymethylglutaryl 77.6 52 0.0011 34.5 13.8 156 275-438 24-197 (287)
156 TIGR03586 PseI pseudaminic aci 77.5 38 0.00082 36.4 12.9 63 332-414 102-166 (327)
157 TIGR01182 eda Entner-Doudoroff 77.3 12 0.00025 37.6 8.4 100 284-415 28-128 (204)
158 cd02809 alpha_hydroxyacid_oxid 77.3 31 0.00067 36.1 12.1 113 280-416 133-257 (299)
159 PF00682 HMGL-like: HMGL-like 77.0 65 0.0014 32.1 13.8 194 274-485 11-216 (237)
160 TIGR02660 nifV_homocitr homoci 76.7 73 0.0016 34.5 15.0 154 274-438 20-184 (365)
161 cd04742 NPD_FabD 2-Nitropropan 76.3 52 0.0011 36.6 13.8 120 278-414 84-247 (418)
162 PRK07315 fructose-bisphosphate 76.2 26 0.00055 37.0 11.0 43 122-164 88-130 (293)
163 PRK05848 nicotinate-nucleotide 75.8 12 0.00026 39.1 8.4 65 278-347 191-258 (273)
164 PRK07315 fructose-bisphosphate 75.8 26 0.00057 36.9 11.0 123 310-438 70-200 (293)
165 PRK07428 nicotinate-nucleotide 75.6 13 0.00029 39.1 8.7 66 277-347 204-272 (288)
166 cd04726 KGPDC_HPS 3-Keto-L-gul 75.3 36 0.00077 32.9 11.2 116 275-415 11-133 (202)
167 PRK08227 autoinducer 2 aldolas 75.2 15 0.00031 38.4 8.7 143 280-437 98-248 (264)
168 TIGR01949 AroFGH_arch predicte 75.1 58 0.0013 33.3 13.1 147 272-437 31-190 (258)
169 cd04739 DHOD_like Dihydroorota 75.0 96 0.0021 33.0 15.1 144 278-443 113-289 (325)
170 PRK05286 dihydroorotate dehydr 74.7 43 0.00094 35.9 12.5 119 287-417 167-320 (344)
171 cd00381 IMPDH IMPDH: The catal 74.5 6 0.00013 42.2 5.9 48 111-158 84-131 (325)
172 cd00954 NAL N-Acetylneuraminic 74.3 23 0.0005 36.8 10.1 97 280-380 25-134 (288)
173 cd02811 IDI-2_FMN Isopentenyl- 74.2 66 0.0014 34.3 13.7 56 374-442 255-313 (326)
174 TIGR03569 NeuB_NnaB N-acetylne 74.2 51 0.0011 35.5 12.8 86 300-410 74-161 (329)
175 cd00405 PRAI Phosphoribosylant 74.1 35 0.00077 33.4 10.9 119 277-419 7-131 (203)
176 PLN02321 2-isopropylmalate syn 73.9 80 0.0017 37.0 15.1 155 274-438 105-282 (632)
177 PRK03620 5-dehydro-4-deoxygluc 73.7 25 0.00055 36.9 10.3 97 280-380 32-138 (303)
178 TIGR00736 nifR3_rel_arch TIM-b 73.7 66 0.0014 32.9 12.9 120 275-415 78-220 (231)
179 TIGR00973 leuA_bact 2-isopropy 73.6 98 0.0021 35.1 15.5 155 274-438 20-188 (494)
180 cd07940 DRE_TIM_IPMS 2-isoprop 73.6 1.1E+02 0.0025 31.3 15.8 154 274-438 17-185 (268)
181 TIGR00343 pyridoxal 5'-phospha 73.5 60 0.0013 34.3 12.7 114 296-441 51-166 (287)
182 cd04737 LOX_like_FMN L-Lactate 73.3 39 0.00085 36.6 11.8 114 300-442 209-335 (351)
183 COG1751 Uncharacterized conser 73.3 8.6 0.00019 37.0 5.9 47 460-506 12-60 (186)
184 PRK14057 epimerase; Provisiona 73.2 1.1E+02 0.0024 31.8 14.5 141 280-440 89-246 (254)
185 PRK01885 greB transcription el 72.8 26 0.00056 33.6 9.2 130 70-242 5-155 (157)
186 TIGR00674 dapA dihydrodipicoli 72.7 26 0.00056 36.3 10.0 97 280-380 23-130 (285)
187 TIGR01859 fruc_bis_ald_ fructo 72.7 98 0.0021 32.5 14.3 117 318-438 75-199 (282)
188 PRK13397 3-deoxy-7-phosphohept 72.4 68 0.0015 33.2 12.7 90 302-415 66-156 (250)
189 PF01729 QRPTase_C: Quinolinat 72.2 10 0.00022 36.9 6.3 63 279-346 90-155 (169)
190 PRK06852 aldolase; Validated 72.2 71 0.0015 34.1 13.1 106 373-482 91-210 (304)
191 PRK02615 thiamine-phosphate py 72.2 58 0.0013 35.3 12.7 53 112-164 149-201 (347)
192 cd04738 DHOD_2_like Dihydrooro 72.0 62 0.0014 34.4 12.9 117 288-416 159-310 (327)
193 cd02922 FCB2_FMN Flavocytochro 72.0 78 0.0017 34.2 13.6 94 299-415 200-300 (344)
194 cd07938 DRE_TIM_HMGL 3-hydroxy 71.9 74 0.0016 33.1 13.1 169 259-437 7-190 (274)
195 PRK07998 gatY putative fructos 71.9 82 0.0018 33.2 13.4 117 316-437 73-197 (283)
196 cd00947 TBP_aldolase_IIB Tagat 71.7 1.3E+02 0.0027 31.7 14.7 119 316-438 68-195 (276)
197 PRK13209 L-xylulose 5-phosphat 71.4 95 0.0021 31.6 13.7 41 279-319 24-74 (283)
198 cd07941 DRE_TIM_LeuA3 Desulfob 71.3 1.3E+02 0.0029 31.1 16.4 159 275-438 18-193 (273)
199 PRK00507 deoxyribose-phosphate 70.9 64 0.0014 32.6 12.0 147 272-435 17-176 (221)
200 cd01568 QPRTase_NadC Quinolina 70.6 18 0.00038 37.7 8.1 66 275-346 187-255 (269)
201 PRK07709 fructose-bisphosphate 70.4 53 0.0012 34.6 11.6 117 317-438 77-202 (285)
202 cd01573 modD_like ModD; Quinol 70.2 23 0.00049 37.0 8.8 65 277-346 191-258 (272)
203 KOG3111 D-ribulose-5-phosphate 70.2 1.3E+02 0.0027 30.4 14.3 140 280-439 78-221 (224)
204 PRK07226 fructose-bisphosphate 70.1 1.2E+02 0.0027 31.1 14.3 67 282-351 166-236 (267)
205 TIGR02814 pfaD_fam PfaD family 70.1 69 0.0015 35.9 13.0 123 278-414 89-252 (444)
206 PRK13398 3-deoxy-7-phosphohept 69.6 66 0.0014 33.5 12.1 106 301-430 77-185 (266)
207 PRK14024 phosphoribosyl isomer 69.3 92 0.002 31.6 12.9 135 277-428 85-235 (241)
208 cd01561 CBS_like CBS_like: Thi 69.2 1E+02 0.0022 31.9 13.5 123 365-507 67-197 (291)
209 cd01562 Thr-dehyd Threonine de 69.2 84 0.0018 32.5 12.9 118 364-506 78-201 (304)
210 PRK00043 thiE thiamine-phospha 69.1 87 0.0019 30.3 12.3 103 278-415 23-131 (212)
211 PLN02495 oxidoreductase, actin 69.0 1.7E+02 0.0037 32.2 15.6 147 275-442 125-321 (385)
212 TIGR03128 RuMP_HxlA 3-hexulose 69.0 76 0.0016 30.9 11.9 116 275-415 10-133 (206)
213 COG0036 Rpe Pentose-5-phosphat 68.9 46 0.00099 33.9 10.3 72 279-357 74-145 (220)
214 PRK07896 nicotinate-nucleotide 68.9 17 0.00036 38.4 7.5 65 277-346 207-274 (289)
215 cd00950 DHDPS Dihydrodipicolin 68.9 35 0.00077 35.2 10.0 97 280-380 25-132 (284)
216 cd00429 RPE Ribulose-5-phospha 68.9 1.1E+02 0.0025 29.4 16.0 133 280-439 16-161 (211)
217 PRK15447 putative protease; Pr 68.8 29 0.00063 36.5 9.4 77 330-415 17-95 (301)
218 cd04723 HisA_HisF Phosphoribos 68.7 89 0.0019 31.5 12.6 131 277-428 88-231 (233)
219 PRK12595 bifunctional 3-deoxy- 68.6 41 0.00088 36.6 10.7 90 302-415 169-259 (360)
220 TIGR00126 deoC deoxyribose-pho 68.5 89 0.0019 31.5 12.3 144 272-437 13-174 (211)
221 PF00290 Trp_syntA: Tryptophan 68.3 86 0.0019 32.6 12.5 118 281-415 107-226 (259)
222 PRK05892 nucleoside diphosphat 68.2 35 0.00076 32.8 9.0 129 70-243 6-156 (158)
223 PF00834 Ribul_P_3_epim: Ribul 68.2 17 0.00036 36.3 7.1 117 280-415 71-194 (201)
224 cd00945 Aldolase_Class_I Class 68.0 1.1E+02 0.0024 28.8 14.4 44 393-438 63-110 (201)
225 PRK07114 keto-hydroxyglutarate 68.0 30 0.00065 35.1 8.9 110 291-415 16-139 (222)
226 PF01274 Malate_synthase: Mala 67.8 9.4 0.0002 43.5 5.8 124 290-415 204-364 (526)
227 PRK00278 trpC indole-3-glycero 67.7 1.3E+02 0.0028 31.1 13.7 113 277-417 70-189 (260)
228 cd00564 TMP_TenI Thiamine mono 67.6 96 0.0021 29.2 12.1 125 282-431 65-194 (196)
229 TIGR01302 IMP_dehydrog inosine 67.1 9.6 0.00021 42.4 5.7 49 110-158 213-261 (450)
230 COG0826 Collagenase and relate 67.1 32 0.00069 37.3 9.4 81 328-415 14-99 (347)
231 PRK09250 fructose-bisphosphate 67.1 1.2E+02 0.0025 33.1 13.5 95 276-379 90-197 (348)
232 PRK09856 fructoselysine 3-epim 66.8 1.3E+02 0.0028 30.4 13.5 122 279-405 16-171 (275)
233 TIGR02708 L_lactate_ox L-lacta 66.4 37 0.00079 37.1 9.7 91 300-415 216-312 (367)
234 TIGR01462 greA transcription e 66.4 26 0.00056 33.2 7.7 91 147-241 49-150 (151)
235 PRK02615 thiamine-phosphate py 66.2 87 0.0019 34.0 12.5 131 282-437 210-344 (347)
236 PRK05742 nicotinate-nucleotide 66.0 27 0.00058 36.7 8.4 64 276-347 196-262 (277)
237 PF00899 ThiF: ThiF family; I 65.7 42 0.00091 30.5 8.8 68 303-381 57-124 (135)
238 PRK06801 hypothetical protein; 65.6 1.5E+02 0.0032 31.3 13.8 118 316-437 73-201 (286)
239 PRK07334 threonine dehydratase 65.4 1.2E+02 0.0025 33.3 13.6 118 365-507 85-208 (403)
240 PRK09250 fructose-bisphosphate 65.0 98 0.0021 33.7 12.4 174 293-484 38-241 (348)
241 PLN02417 dihydrodipicolinate s 65.0 43 0.00093 34.8 9.7 95 280-380 26-131 (280)
242 TIGR00693 thiE thiamine-phosph 65.0 84 0.0018 30.2 11.2 125 280-431 64-196 (196)
243 PRK00366 ispG 4-hydroxy-3-meth 64.9 87 0.0019 34.1 12.0 218 280-527 46-274 (360)
244 PF03437 BtpA: BtpA family; I 64.8 26 0.00057 36.3 7.9 83 275-364 156-250 (254)
245 cd02808 GltS_FMN Glutamate syn 64.8 1.1E+02 0.0023 33.6 13.1 117 286-415 180-314 (392)
246 TIGR01461 greB transcription e 64.7 41 0.00089 32.2 8.7 130 70-242 3-153 (156)
247 PRK09195 gatY tagatose-bisphos 64.7 1.8E+02 0.004 30.6 14.3 155 279-438 7-201 (284)
248 PRK07084 fructose-bisphosphate 64.4 81 0.0018 33.9 11.7 106 316-425 84-194 (321)
249 PRK15452 putative protease; Pr 64.4 25 0.00054 39.3 8.2 86 318-415 4-96 (443)
250 PRK12483 threonine dehydratase 64.4 1.1E+02 0.0024 35.0 13.4 155 318-508 52-224 (521)
251 TIGR03572 WbuZ glycosyl amidat 64.2 1.2E+02 0.0027 30.1 12.6 121 277-415 84-227 (232)
252 PRK12738 kbaY tagatose-bisphos 64.2 1.9E+02 0.004 30.7 14.2 118 316-437 73-200 (286)
253 PRK02083 imidazole glycerol ph 64.2 1.7E+02 0.0037 29.7 14.7 131 277-428 84-240 (253)
254 TIGR01361 DAHP_synth_Bsub phos 63.7 53 0.0011 34.0 10.0 91 301-415 75-166 (260)
255 PLN02970 serine racemase 63.7 1.3E+02 0.0028 32.0 13.2 118 365-507 89-212 (328)
256 PRK04147 N-acetylneuraminate l 63.4 79 0.0017 33.0 11.3 97 280-380 28-136 (293)
257 COG0167 PyrD Dihydroorotate de 63.2 1.4E+02 0.0029 32.1 13.0 149 275-440 107-294 (310)
258 PRK14720 transcript cleavage f 63.1 31 0.00068 41.9 9.1 134 65-243 745-902 (906)
259 TIGR02320 PEP_mutase phosphoen 62.9 70 0.0015 33.7 10.8 65 282-346 98-189 (285)
260 TIGR00343 pyridoxal 5'-phospha 62.9 1.7E+02 0.0036 31.1 13.3 39 399-437 212-250 (287)
261 PRK06096 molybdenum transport 62.7 19 0.00041 37.9 6.6 64 278-346 198-264 (284)
262 PF01645 Glu_synthase: Conserv 62.7 77 0.0017 34.7 11.3 138 260-415 150-303 (368)
263 TIGR01334 modD putative molybd 62.6 23 0.0005 37.2 7.1 64 278-346 197-263 (277)
264 PRK06815 hypothetical protein; 62.5 1E+02 0.0022 32.5 12.1 118 365-507 82-205 (317)
265 cd00951 KDGDH 5-dehydro-4-deox 62.3 57 0.0012 34.0 10.1 95 280-380 25-131 (289)
266 PRK05096 guanosine 5'-monophos 62.3 15 0.00033 39.6 5.7 48 111-158 98-147 (346)
267 PRK06843 inosine 5-monophospha 62.3 13 0.00028 41.1 5.4 50 109-158 141-190 (404)
268 cd02932 OYE_YqiM_FMN Old yello 62.1 1.4E+02 0.0031 31.7 13.2 126 273-415 143-320 (336)
269 PRK10737 FKBP-type peptidyl-pr 62.0 24 0.00053 35.2 6.8 60 189-248 51-119 (196)
270 cd04737 LOX_like_FMN L-Lactate 61.8 29 0.00064 37.6 8.0 95 278-376 231-341 (351)
271 cd00408 DHDPS-like Dihydrodipi 61.8 78 0.0017 32.4 10.9 98 279-380 21-129 (281)
272 cd00959 DeoC 2-deoxyribose-5-p 61.8 52 0.0011 32.4 9.2 148 272-436 12-172 (203)
273 PRK05458 guanosine 5'-monophos 61.2 14 0.0003 39.7 5.3 44 115-158 91-136 (326)
274 TIGR01305 GMP_reduct_1 guanosi 60.0 18 0.00039 39.0 5.9 48 111-158 97-146 (343)
275 PTZ00314 inosine-5'-monophosph 59.8 12 0.00027 42.2 4.9 45 114-158 234-278 (495)
276 PRK03170 dihydrodipicolinate s 59.6 58 0.0013 33.8 9.6 97 280-380 26-133 (292)
277 TIGR01127 ilvA_1Cterm threonin 59.5 1.5E+02 0.0032 32.1 12.9 120 364-508 61-186 (380)
278 TIGR02708 L_lactate_ox L-lacta 59.5 27 0.00059 38.1 7.2 96 278-377 238-349 (367)
279 cd01572 QPRTase Quinolinate ph 59.3 33 0.00071 35.7 7.6 65 275-347 188-255 (268)
280 PRK08195 4-hyroxy-2-oxovalerat 59.3 2.6E+02 0.0055 30.1 15.9 147 274-438 22-186 (337)
281 COG1465 Predicted alternative 58.9 1.4E+02 0.0031 31.8 11.9 197 280-509 19-296 (376)
282 COG1830 FbaB DhnA-type fructos 58.9 1.7E+02 0.0038 30.6 12.6 156 317-496 23-202 (265)
283 PF00677 Lum_binding: Lumazine 58.6 51 0.0011 28.2 7.4 55 208-264 20-82 (85)
284 PRK08610 fructose-bisphosphate 58.6 1.1E+02 0.0024 32.3 11.4 116 318-438 78-202 (286)
285 PRK12290 thiE thiamine-phospha 58.2 97 0.0021 34.7 11.2 130 282-437 270-414 (437)
286 cd02808 GltS_FMN Glutamate syn 57.9 29 0.00062 38.1 7.2 94 278-384 226-343 (392)
287 PRK14045 1-aminocyclopropane-1 57.8 2.6E+02 0.0056 29.7 14.9 127 364-507 85-221 (329)
288 PRK07695 transcriptional regul 57.7 27 0.00059 34.1 6.4 34 125-158 19-52 (201)
289 cd01485 E1-1_like Ubiquitin ac 57.5 69 0.0015 31.5 9.2 68 304-381 77-145 (198)
290 PRK04180 pyridoxal biosynthesi 57.4 1.5E+02 0.0031 31.6 11.8 140 279-439 86-258 (293)
291 TIGR00078 nadC nicotinate-nucl 56.9 25 0.00054 36.6 6.2 64 275-346 184-250 (265)
292 PRK06381 threonine synthase; V 56.8 2.2E+02 0.0047 29.9 13.4 120 365-507 77-209 (319)
293 cd00377 ICL_PEPM Members of th 56.7 79 0.0017 32.3 9.8 112 280-415 88-226 (243)
294 PRK08072 nicotinate-nucleotide 56.6 32 0.0007 36.1 7.0 65 275-347 194-261 (277)
295 PRK12857 fructose-1,6-bisphosp 56.5 2.6E+02 0.0057 29.4 13.8 155 279-438 7-201 (284)
296 cd04728 ThiG Thiazole synthase 56.4 2E+02 0.0043 29.9 12.4 76 351-442 156-231 (248)
297 PRK08195 4-hyroxy-2-oxovalerat 56.3 2.9E+02 0.0062 29.8 14.4 137 278-430 90-239 (337)
298 cd00331 IGPS Indole-3-glycerol 56.2 2.1E+02 0.0045 28.2 16.3 113 275-418 29-151 (217)
299 TIGR02356 adenyl_thiF thiazole 56.0 63 0.0014 31.9 8.6 68 303-381 76-143 (202)
300 cd04731 HisF The cyclase subun 56.0 2.2E+02 0.0049 28.5 13.3 131 278-428 82-236 (243)
301 COG0069 GltB Glutamate synthas 55.7 50 0.0011 37.4 8.6 117 286-414 269-402 (485)
302 cd04733 OYE_like_2_FMN Old yel 55.6 2E+02 0.0043 30.7 12.9 131 273-415 138-322 (338)
303 PF01116 F_bP_aldolase: Fructo 55.5 2.2E+02 0.0047 30.0 13.0 119 316-438 72-203 (287)
304 PF07521 RMMBL: RNA-metabolisi 55.4 7.4 0.00016 29.1 1.5 24 134-157 7-31 (43)
305 TIGR03249 KdgD 5-dehydro-4-deo 55.4 1.1E+02 0.0023 32.1 10.7 95 280-380 30-136 (296)
306 PRK05283 deoxyribose-phosphate 55.3 1.7E+02 0.0036 30.6 11.8 149 272-437 21-189 (257)
307 cd01492 Aos1_SUMO Ubiquitin ac 55.3 76 0.0017 31.3 9.1 66 304-381 77-142 (197)
308 PRK06382 threonine dehydratase 55.1 2.3E+02 0.005 31.0 13.7 118 366-508 88-211 (406)
309 PRK09427 bifunctional indole-3 55.0 32 0.0007 38.6 7.1 109 276-414 166-283 (454)
310 PLN02274 inosine-5'-monophosph 55.0 21 0.00047 40.5 5.8 50 109-158 236-285 (505)
311 PRK00208 thiG thiazole synthas 54.8 2.2E+02 0.0047 29.7 12.4 73 354-442 159-231 (250)
312 COG0352 ThiE Thiamine monophos 54.7 1.9E+02 0.0042 29.1 11.9 125 281-437 73-208 (211)
313 PRK04452 acetyl-CoA decarbonyl 54.0 3E+02 0.0065 29.6 13.8 151 276-438 136-312 (319)
314 TIGR00683 nanA N-acetylneurami 53.9 1.5E+02 0.0033 30.9 11.5 98 279-380 24-134 (290)
315 PRK06543 nicotinate-nucleotide 53.8 31 0.00068 36.3 6.3 63 277-347 201-266 (281)
316 cd04736 MDH_FMN Mandelate dehy 53.8 88 0.0019 34.2 9.9 94 300-415 224-318 (361)
317 TIGR01306 GMP_reduct_2 guanosi 53.7 25 0.00054 37.7 5.7 48 111-158 84-133 (321)
318 TIGR01139 cysK cysteine syntha 53.5 2.7E+02 0.0058 28.9 13.3 122 365-507 71-200 (298)
319 PRK08185 hypothetical protein; 53.5 3E+02 0.0064 29.1 14.4 119 316-438 67-197 (283)
320 TIGR00739 yajC preprotein tran 53.4 28 0.0006 30.0 4.9 43 214-257 31-73 (84)
321 COG0119 LeuA Isopropylmalate/h 53.3 2.7E+02 0.0059 30.9 13.8 157 274-439 21-189 (409)
322 TIGR02355 moeB molybdopterin s 53.1 77 0.0017 32.3 9.0 67 304-381 80-146 (240)
323 TIGR00167 cbbA ketose-bisphosp 53.1 1.6E+02 0.0034 31.1 11.5 120 315-438 75-205 (288)
324 PF05690 ThiG: Thiazole biosyn 52.9 70 0.0015 33.0 8.4 85 340-440 145-229 (247)
325 cd03332 LMO_FMN L-Lactate 2-mo 52.8 1E+02 0.0022 33.9 10.3 93 300-415 241-337 (383)
326 PF01136 Peptidase_U32: Peptid 52.8 26 0.00055 34.9 5.4 42 121-162 157-198 (233)
327 PRK13585 1-(5-phosphoribosyl)- 52.8 2.5E+02 0.0054 28.0 13.9 127 277-424 86-231 (241)
328 PRK11840 bifunctional sulfur c 52.7 3.3E+02 0.007 29.5 13.7 85 342-442 221-305 (326)
329 PRK09224 threonine dehydratase 52.5 2.4E+02 0.0052 32.1 13.6 119 364-507 81-206 (504)
330 PRK00311 panB 3-methyl-2-oxobu 52.3 3E+02 0.0064 28.8 13.2 146 272-439 18-196 (264)
331 PRK03512 thiamine-phosphate py 51.9 2.6E+02 0.0056 27.9 12.4 126 282-436 72-207 (211)
332 PRK12737 gatY tagatose-bisphos 51.7 3.2E+02 0.0068 28.9 14.1 155 279-438 7-201 (284)
333 TIGR01037 pyrD_sub1_fam dihydr 51.6 3E+02 0.0065 28.6 15.4 141 260-416 6-190 (300)
334 cd04740 DHOD_1B_like Dihydroor 51.4 3E+02 0.0064 28.5 14.1 89 316-416 88-187 (296)
335 PRK08638 threonine dehydratase 51.2 2.5E+02 0.0055 30.0 12.9 119 364-507 88-212 (333)
336 TIGR00735 hisF imidazoleglycer 51.2 68 0.0015 32.7 8.3 86 279-377 158-253 (254)
337 COG0434 SgcQ Predicted TIM-bar 50.9 92 0.002 32.3 8.8 89 399-499 38-143 (263)
338 PLN02535 glycolate oxidase 50.5 38 0.00083 36.9 6.6 66 278-350 233-311 (364)
339 PRK13396 3-deoxy-7-phosphohept 50.4 2.7E+02 0.0058 30.4 12.9 100 302-425 152-255 (352)
340 PF00701 DHDPS: Dihydrodipicol 50.4 1.4E+02 0.0031 30.8 10.6 170 332-523 27-203 (289)
341 TIGR01858 tag_bisphos_ald clas 50.0 3.3E+02 0.0073 28.7 13.6 153 279-438 5-199 (282)
342 cd02922 FCB2_FMN Flavocytochro 49.7 66 0.0014 34.8 8.2 95 278-376 223-336 (344)
343 PF01081 Aldolase: KDPG and KH 49.6 72 0.0016 31.8 7.8 40 362-415 89-128 (196)
344 cd07937 DRE_TIM_PC_TC_5S Pyruv 49.4 2.4E+02 0.0052 29.3 12.1 73 362-439 119-192 (275)
345 PRK06106 nicotinate-nucleotide 49.3 42 0.0009 35.4 6.4 62 278-347 203-267 (281)
346 TIGR00736 nifR3_rel_arch TIM-b 49.3 56 0.0012 33.4 7.2 72 280-355 152-229 (231)
347 cd02911 arch_FMN Archeal FMN-b 49.2 1.7E+02 0.0037 29.7 10.7 95 298-415 122-220 (233)
348 cd00405 PRAI Phosphoribosylant 49.0 2.6E+02 0.0057 27.2 12.3 116 282-422 66-190 (203)
349 PRK13111 trpA tryptophan synth 49.0 2.1E+02 0.0045 29.7 11.4 117 280-415 108-228 (258)
350 PRK10550 tRNA-dihydrouridine s 48.9 44 0.00096 35.5 6.7 64 280-352 152-230 (312)
351 cd00952 CHBPH_aldolase Trans-o 48.9 2.2E+02 0.0047 30.1 11.8 98 279-380 32-141 (309)
352 cd04735 OYE_like_4_FMN Old yel 48.8 1.5E+02 0.0032 31.9 10.8 131 272-415 132-313 (353)
353 PRK07476 eutB threonine dehydr 48.7 2.8E+02 0.0062 29.2 12.8 118 365-507 81-204 (322)
354 cd00408 DHDPS-like Dihydrodipi 48.5 1.5E+02 0.0032 30.4 10.3 155 340-515 32-193 (281)
355 PF04131 NanE: Putative N-acet 48.5 2.2E+02 0.0048 28.5 10.9 125 283-436 6-142 (192)
356 COG1570 XseA Exonuclease VII, 48.5 4E+02 0.0087 30.0 14.0 163 191-380 39-231 (440)
357 PLN02495 oxidoreductase, actin 48.5 2.7E+02 0.0057 30.8 12.7 50 358-417 165-216 (385)
358 cd02809 alpha_hydroxyacid_oxid 48.3 59 0.0013 34.1 7.5 65 279-350 183-260 (299)
359 PRK05437 isopentenyl pyrophosp 48.3 3.2E+02 0.007 29.5 13.2 131 267-415 125-290 (352)
360 PRK09140 2-dehydro-3-deoxy-6-p 47.9 1.6E+02 0.0036 29.3 10.2 101 283-414 29-130 (206)
361 TIGR00674 dapA dihydrodipicoli 47.8 1.3E+02 0.0029 31.1 9.9 97 333-440 25-125 (285)
362 COG2070 Dioxygenases related t 47.8 2.1E+02 0.0045 30.9 11.6 114 278-414 92-212 (336)
363 cd08556 GDPD Glycerophosphodie 47.8 1.6E+02 0.0034 27.6 9.7 94 290-414 92-187 (189)
364 TIGR01136 cysKM cysteine synth 47.6 3.4E+02 0.0075 28.1 13.8 121 365-507 72-200 (299)
365 TIGR00259 thylakoid_BtpA membr 47.5 1E+02 0.0022 32.1 8.8 88 274-364 154-250 (257)
366 TIGR00259 thylakoid_BtpA membr 47.3 1.9E+02 0.004 30.2 10.7 114 279-415 92-227 (257)
367 cd00953 KDG_aldolase KDG (2-ke 47.2 1.7E+02 0.0036 30.4 10.5 93 281-380 25-127 (279)
368 TIGR00742 yjbN tRNA dihydrouri 47.2 48 0.001 35.3 6.6 67 280-351 145-228 (318)
369 cd04743 NPD_PKS 2-Nitropropane 47.1 4E+02 0.0086 28.7 13.5 116 278-415 71-202 (320)
370 TIGR00875 fsa_talC_mipB fructo 47.1 63 0.0014 32.6 7.1 60 280-345 113-184 (213)
371 PRK08417 dihydroorotase; Provi 47.0 4.1E+02 0.0088 28.8 16.3 128 270-406 40-189 (386)
372 TIGR01137 cysta_beta cystathio 46.7 3.7E+02 0.0081 29.5 13.8 125 365-507 76-207 (454)
373 cd04727 pdxS PdxS is a subunit 46.4 3.7E+02 0.0081 28.5 12.7 139 279-437 77-247 (283)
374 PRK00748 1-(5-phosphoribosyl)- 46.4 3E+02 0.0066 27.1 13.0 119 277-415 84-220 (233)
375 cd01487 E1_ThiF_like E1_ThiF_l 46.4 1.1E+02 0.0025 29.4 8.5 67 304-381 54-121 (174)
376 PRK08644 thiamine biosynthesis 46.4 1.1E+02 0.0023 30.6 8.6 67 304-381 83-150 (212)
377 PRK06793 fliI flagellum-specif 46.2 1.1E+02 0.0024 34.2 9.4 245 168-441 29-295 (432)
378 cd00757 ThiF_MoeB_HesA_family 46.2 1E+02 0.0023 30.8 8.6 67 303-380 76-142 (228)
379 PRK07028 bifunctional hexulose 46.0 3.8E+02 0.0082 29.6 13.6 116 279-415 19-138 (430)
380 cd02801 DUS_like_FMN Dihydrour 45.9 3E+02 0.0065 27.0 13.9 116 283-415 74-213 (231)
381 PRK08198 threonine dehydratase 45.8 4.3E+02 0.0093 28.7 14.0 119 365-508 84-208 (404)
382 cd00954 NAL N-Acetylneuraminic 45.4 1.7E+02 0.0036 30.4 10.2 95 332-438 26-126 (288)
383 cd08567 GDPD_SpGDE_like Glycer 45.2 1.5E+02 0.0033 29.7 9.7 94 291-414 165-258 (263)
384 PLN03013 cysteine synthase 45.2 4.1E+02 0.0088 29.8 13.6 122 366-508 190-318 (429)
385 PRK05690 molybdopterin biosynt 45.1 1.1E+02 0.0023 31.3 8.6 67 303-380 87-153 (245)
386 TIGR02313 HpaI-NOT-DapA 2,4-di 45.0 2.6E+02 0.0057 29.2 11.7 97 280-380 25-133 (294)
387 PRK09016 quinolinate phosphori 44.7 55 0.0012 34.7 6.5 62 278-347 217-281 (296)
388 PLN02979 glycolate oxidase 44.5 1.6E+02 0.0034 32.3 10.0 91 300-415 211-307 (366)
389 TIGR01036 pyrD_sub2 dihydrooro 44.5 2.5E+02 0.0053 30.2 11.6 115 289-415 166-317 (335)
390 PRK13509 transcriptional repre 44.5 65 0.0014 33.0 6.9 62 460-524 80-141 (251)
391 COG4043 Preprotein translocase 44.4 29 0.00063 31.1 3.7 31 211-242 25-55 (111)
392 cd05565 PTS_IIB_lactose PTS_II 44.3 1.4E+02 0.0031 26.4 8.1 69 299-382 12-80 (99)
393 PRK07048 serine/threonine dehy 44.3 3.1E+02 0.0066 28.9 12.2 118 365-507 86-209 (321)
394 PLN02716 nicotinate-nucleotide 44.2 63 0.0014 34.5 6.8 62 278-346 212-290 (308)
395 PLN02898 HMP-P kinase/thiamin- 44.0 2.8E+02 0.0062 31.2 12.5 127 282-439 360-499 (502)
396 TIGR00735 hisF imidazoleglycer 44.0 3.7E+02 0.0079 27.4 14.0 128 277-426 84-240 (254)
397 PRK10411 DNA-binding transcrip 43.9 70 0.0015 32.6 7.0 64 459-525 79-142 (240)
398 PF01180 DHO_dh: Dihydroorotat 43.8 1.2E+02 0.0026 31.5 8.9 145 277-440 112-293 (295)
399 COG0800 Eda 2-keto-3-deoxy-6-p 43.6 2.5E+02 0.0055 28.4 10.6 105 292-414 15-132 (211)
400 cd00452 KDPG_aldolase KDPG and 43.3 2.4E+02 0.0053 27.3 10.5 106 277-418 64-174 (190)
401 PRK13308 ureC urease subunit a 43.2 6E+02 0.013 29.6 19.2 131 283-430 149-288 (569)
402 TIGR01138 cysM cysteine syntha 43.0 4.1E+02 0.0088 27.7 13.9 121 365-507 73-200 (290)
403 PRK08328 hypothetical protein; 42.8 1.4E+02 0.0031 30.1 9.0 63 307-380 87-149 (231)
404 PLN02565 cysteine synthase 42.8 4.1E+02 0.0089 28.2 12.8 121 366-507 82-209 (322)
405 PLN02550 threonine dehydratase 42.5 3.4E+02 0.0075 31.7 12.9 160 318-508 124-296 (591)
406 PF00701 DHDPS: Dihydrodipicol 42.4 2.1E+02 0.0046 29.5 10.4 98 280-381 26-134 (289)
407 PRK05567 inosine 5'-monophosph 42.3 55 0.0012 36.8 6.5 50 109-158 216-265 (486)
408 COG0710 AroD 3-dehydroquinate 42.2 3.4E+02 0.0074 27.9 11.5 141 275-436 76-229 (231)
409 TIGR02991 ectoine_eutB ectoine 42.1 4.4E+02 0.0096 27.8 13.2 117 365-506 81-203 (317)
410 PRK08329 threonine synthase; V 42.1 4.6E+02 0.01 28.0 16.7 118 365-507 118-247 (347)
411 PRK11750 gltB glutamate syntha 41.9 76 0.0016 40.6 8.0 117 286-414 962-1095(1485)
412 PRK08255 salicylyl-CoA 5-hydro 41.9 2.4E+02 0.0053 33.6 12.0 131 273-415 540-717 (765)
413 cd04732 HisA HisA. Phosphorib 41.8 3.5E+02 0.0077 26.6 12.7 149 277-438 29-189 (234)
414 PRK08639 threonine dehydratase 41.7 3.3E+02 0.0072 30.0 12.3 121 365-507 87-216 (420)
415 PRK12344 putative alpha-isopro 41.6 5.9E+02 0.013 29.2 18.6 159 274-438 24-200 (524)
416 PRK08526 threonine dehydratase 41.5 4E+02 0.0086 29.4 12.8 119 365-508 82-206 (403)
417 COG0329 DapA Dihydrodipicolina 41.5 2.4E+02 0.0051 29.8 10.7 97 280-380 29-136 (299)
418 PLN03228 methylthioalkylmalate 41.2 6E+02 0.013 29.1 14.6 168 259-438 93-281 (503)
419 cd02933 OYE_like_FMN Old yello 41.2 3.2E+02 0.0068 29.4 11.8 125 272-415 140-314 (338)
420 PRK06559 nicotinate-nucleotide 41.2 66 0.0014 34.1 6.4 63 277-347 205-270 (290)
421 smart00729 Elp3 Elongator prot 41.1 2.1E+02 0.0045 26.6 9.4 44 118-161 95-147 (216)
422 cd02940 DHPD_FMN Dihydropyrimi 41.0 2.8E+02 0.006 29.0 11.1 48 359-416 152-201 (299)
423 PF04055 Radical_SAM: Radical 41.0 1.8E+02 0.0039 25.8 8.6 53 109-161 76-138 (166)
424 TIGR00542 hxl6Piso_put hexulos 40.9 4.1E+02 0.0088 27.0 13.8 40 280-319 20-69 (279)
425 PRK10717 cysteine synthase A; 40.6 4.6E+02 0.01 27.6 13.0 127 365-507 78-213 (330)
426 PRK01033 imidazole glycerol ph 40.4 4.2E+02 0.0092 27.1 12.2 118 277-415 84-226 (258)
427 PRK09140 2-dehydro-3-deoxy-6-p 40.2 1.6E+02 0.0035 29.4 8.7 64 278-349 113-182 (206)
428 cd00950 DHDPS Dihydrodipicolin 40.2 1.8E+02 0.0039 29.9 9.5 98 333-440 27-127 (284)
429 PRK13111 trpA tryptophan synth 40.1 4.4E+02 0.0096 27.3 15.2 108 261-379 12-147 (258)
430 PRK11815 tRNA-dihydrouridine s 39.7 86 0.0019 33.5 7.2 65 282-351 157-238 (333)
431 cd02911 arch_FMN Archeal FMN-b 39.6 72 0.0016 32.4 6.3 62 280-348 156-222 (233)
432 cd03332 LMO_FMN L-Lactate 2-mo 39.5 84 0.0018 34.6 7.1 67 277-350 262-341 (383)
433 TIGR01303 IMP_DH_rel_1 IMP deh 39.3 45 0.00097 37.7 5.1 50 109-158 213-262 (475)
434 PRK05835 fructose-bisphosphate 39.2 4.2E+02 0.009 28.4 12.0 132 301-438 58-203 (307)
435 PRK06342 transcription elongat 39.1 1.7E+02 0.0036 28.3 8.3 122 66-241 25-159 (160)
436 PRK06110 hypothetical protein; 38.9 4.4E+02 0.0095 27.8 12.3 117 365-507 84-206 (322)
437 PF01207 Dus: Dihydrouridine s 38.8 59 0.0013 34.4 5.7 68 279-351 141-218 (309)
438 PLN02535 glycolate oxidase 38.8 2.5E+02 0.0053 30.8 10.5 95 299-417 210-309 (364)
439 PF00455 DeoRC: DeoR C termina 38.8 84 0.0018 29.9 6.3 62 460-524 6-68 (161)
440 PRK07591 threonine synthase; V 38.6 4.4E+02 0.0094 29.1 12.7 119 364-506 150-283 (421)
441 cd03174 DRE_TIM_metallolyase D 38.5 4E+02 0.0086 26.6 11.5 133 279-429 77-239 (265)
442 PRK00230 orotidine 5'-phosphat 38.3 81 0.0018 31.8 6.4 139 280-436 71-228 (230)
443 PF01261 AP_endonuc_2: Xylose 38.3 79 0.0017 29.8 6.1 120 282-406 1-155 (213)
444 KOG2550 IMP dehydrogenase/GMP 38.1 53 0.0012 36.4 5.2 46 114-159 244-289 (503)
445 cd00537 MTHFR Methylenetetrahy 38.0 69 0.0015 33.0 6.0 68 276-344 147-214 (274)
446 cd06557 KPHMT-like Ketopantoat 37.7 4.9E+02 0.011 27.0 12.4 146 272-439 15-193 (254)
447 cd07943 DRE_TIM_HOA 4-hydroxy- 37.6 4.6E+02 0.01 26.7 17.3 149 275-439 20-184 (263)
448 PRK13957 indole-3-glycerol-pho 37.5 1.1E+02 0.0023 31.8 7.1 76 270-352 151-236 (247)
449 PRK01130 N-acetylmannosamine-6 37.5 92 0.002 30.9 6.6 66 278-348 128-204 (221)
450 TIGR00046 RNA methyltransferas 37.3 1.6E+02 0.0034 30.0 8.3 107 220-331 31-154 (240)
451 TIGR00737 nifR3_yhdG putative 37.2 5.2E+02 0.011 27.2 13.8 117 283-415 82-222 (319)
452 KOG0538 Glycolate oxidase [Ene 37.2 1.1E+02 0.0024 32.8 7.2 71 280-354 235-316 (363)
453 PRK07535 methyltetrahydrofolat 37.0 63 0.0014 33.5 5.4 54 124-180 29-82 (261)
454 PRK00865 glutamate racemase; P 36.8 1.7E+02 0.0038 30.0 8.7 122 283-425 61-190 (261)
455 KOG2335 tRNA-dihydrouridine sy 36.7 1.1E+02 0.0023 33.5 7.1 91 279-376 158-269 (358)
456 PRK03170 dihydrodipicolinate s 36.6 2.5E+02 0.0054 29.1 9.9 96 334-440 29-128 (292)
457 PRK12656 fructose-6-phosphate 36.5 1.3E+02 0.0028 30.6 7.4 54 280-339 117-178 (222)
458 cd03316 MR_like Mandelate race 36.4 1.6E+02 0.0036 31.2 8.7 63 108-174 125-196 (357)
459 cd04501 SGNH_hydrolase_like_4 36.4 76 0.0016 29.7 5.6 40 342-381 64-103 (183)
460 PRK04147 N-acetylneuraminate l 36.3 2.8E+02 0.006 28.9 10.2 96 333-439 30-130 (293)
461 PLN02493 probable peroxisomal 36.2 2.5E+02 0.0054 30.8 10.0 91 300-415 212-308 (367)
462 PRK06552 keto-hydroxyglutarate 36.0 3.9E+02 0.0084 26.9 10.8 106 277-417 76-185 (213)
463 TIGR00187 ribE riboflavin synt 36.0 1.3E+02 0.0029 30.0 7.4 56 208-265 22-85 (200)
464 TIGR00853 pts-lac PTS system, 35.9 1.8E+02 0.0039 25.3 7.4 63 303-380 19-81 (95)
465 cd02929 TMADH_HD_FMN Trimethyl 35.8 5.4E+02 0.012 27.9 12.6 132 272-415 138-319 (370)
466 PRK05886 yajC preprotein trans 35.6 71 0.0015 29.0 4.9 44 214-258 32-75 (109)
467 PRK08223 hypothetical protein; 35.6 1.9E+02 0.0041 30.6 8.7 67 304-380 83-150 (287)
468 PLN02858 fructose-bisphosphate 35.5 3.9E+02 0.0084 34.4 12.9 119 316-438 1168-1297(1378)
469 TIGR02320 PEP_mutase phosphoen 35.5 2.3E+02 0.005 29.9 9.4 68 278-346 171-240 (285)
470 PRK13523 NADPH dehydrogenase N 35.5 2.1E+02 0.0046 30.7 9.3 129 272-415 130-305 (337)
471 PLN02741 riboflavin synthase 35.4 1.6E+02 0.0035 29.3 7.8 55 209-265 24-85 (194)
472 PRK06330 transcript cleavage f 35.4 1.7E+02 0.0036 34.9 9.0 132 65-242 562-713 (718)
473 cd00952 CHBPH_aldolase Trans-o 35.3 3.5E+02 0.0076 28.5 10.8 95 334-439 36-134 (309)
474 PF02599 CsrA: Global regulato 35.3 79 0.0017 25.2 4.5 30 221-251 6-35 (54)
475 TIGR03425 urea_degr_2 urea car 35.1 86 0.0019 32.2 5.9 54 187-240 14-81 (233)
476 PRK05597 molybdopterin biosynt 35.1 1.8E+02 0.0039 31.4 8.8 66 304-380 84-149 (355)
477 PLN02424 ketopantoate hydroxym 35.1 6.2E+02 0.013 27.5 14.2 134 270-415 36-202 (332)
478 PRK01362 putative translaldola 35.0 1.2E+02 0.0026 30.6 6.9 54 280-339 113-174 (214)
479 TIGR02660 nifV_homocitr homoci 34.7 5.5E+02 0.012 27.7 12.5 136 278-430 74-235 (365)
480 cd02930 DCR_FMN 2,4-dienoyl-Co 34.6 5E+02 0.011 27.8 12.1 131 273-415 126-306 (353)
481 PRK12346 transaldolase A; Prov 34.6 82 0.0018 33.8 6.0 22 281-303 162-183 (316)
482 PRK10886 DnaA initiator-associ 34.5 3E+02 0.0065 27.3 9.6 94 460-559 24-145 (196)
483 PRK09532 DNA polymerase III su 34.2 2.9E+02 0.0063 33.7 11.1 125 280-409 23-228 (874)
484 TIGR00695 uxuA mannonate dehyd 34.2 1E+02 0.0022 34.1 6.7 89 276-383 10-105 (394)
485 PF13473 Cupredoxin_1: Cupredo 34.2 84 0.0018 27.3 5.1 42 185-226 34-75 (104)
486 PRK05585 yajC preprotein trans 34.2 77 0.0017 28.6 4.8 42 215-257 47-88 (106)
487 cd00377 ICL_PEPM Members of th 34.0 3.9E+02 0.0085 27.2 10.6 63 278-346 162-226 (243)
488 PF02219 MTHFR: Methylenetetra 34.0 67 0.0014 33.5 5.1 69 276-345 159-227 (287)
489 PF09347 DUF1989: Domain of un 33.9 88 0.0019 30.3 5.6 56 187-242 11-80 (166)
490 cd01483 E1_enzyme_family Super 33.9 2.7E+02 0.0059 25.3 8.7 66 304-380 55-120 (143)
491 PRK14852 hypothetical protein; 33.9 1.5E+02 0.0033 36.6 8.6 70 304-382 388-457 (989)
492 PRK10558 alpha-dehydro-beta-de 33.8 2.8E+02 0.0061 28.6 9.6 87 307-415 10-98 (256)
493 PRK02083 imidazole glycerol ph 33.5 1.3E+02 0.0027 30.6 7.0 86 279-377 156-251 (253)
494 PRK06806 fructose-bisphosphate 33.5 1.2E+02 0.0025 31.9 6.8 45 120-164 84-128 (281)
495 PRK08762 molybdopterin biosynt 33.4 2.2E+02 0.0048 30.8 9.2 67 304-381 191-257 (376)
496 TIGR01304 IMP_DH_rel_2 IMP deh 33.4 5.8E+02 0.013 28.0 12.3 106 281-414 104-215 (369)
497 PF11213 DUF3006: Protein of u 33.0 83 0.0018 26.0 4.5 42 192-236 8-50 (71)
498 TIGR01036 pyrD_sub2 dihydrooro 32.9 5.5E+02 0.012 27.5 12.0 52 359-418 187-247 (335)
499 cd04729 NanE N-acetylmannosami 32.8 1.2E+02 0.0026 30.0 6.6 65 279-348 133-208 (219)
500 PRK14024 phosphoribosyl isomer 32.8 62 0.0014 32.8 4.6 74 280-359 150-235 (241)
No 1
>PLN02623 pyruvate kinase
Probab=100.00 E-value=5.4e-136 Score=1117.57 Aligned_cols=573 Identities=84% Similarity=1.213 Sum_probs=525.4
Q ss_pred hhhhhhhhhhccccccCCCchhhhhhhccCCCccccccccccccccccccccccccccc--cccCCCCceeecCCCCccc
Q 008112 2 AQVVATRSIQSSFMCPASGSAQERASEKLKPSSFASTVLSREEKKRVTLVRKSTKISAQ--KATRVEPEVVPVSPEDVPK 79 (577)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 79 (577)
+|+..++|+.++++++.+|+... +.+.|.+|+.+.+...++.+.+.+.+....... ..++++.+++|+||||+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (581)
T PLN02623 3 AQVVATRSIDSSILSSSSGSVSL---DLLSPLSFASKVLGSEARARRRVAVRRRAVTAASLRSKSQETEVIPVSPEDGGA 79 (581)
T ss_pred cccccccccccccccCCCCcccc---cccccccccccccCchhhhhccccccccchhhhhhhccccCcceeecccccccc
Confidence 45556678888888877776443 356888888887776666555544443333333 3778999999999999775
Q ss_pred --ccccccccccccccccccccccCCCCCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHH
Q 008112 80 --RDGEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVK 157 (577)
Q Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir 157 (577)
++++.+...+++.++.++.+||+.|..+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rkTKIV~TiGPas~s~e~l~~li~aGmnv~RlNfSHg~~e~h~~~i~~vr 159 (581)
T PLN02623 80 NFVEDNEEVLLEIQQLGETAVGMWSKPSVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVK 159 (581)
T ss_pred ccccccccccchhhHHHhhhhhhcCCCCCCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeeEEEeecCCCeeEEeecCCcEEEcCCCEEEEEEecCCCCceEEeccccccccccCCCCEEEEeCCeEEEE
Q 008112 158 EYNAQSKDNVIAIMLDTKGPEVRSGDLPQPITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLL 237 (577)
Q Consensus 158 ~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~~i~L~~G~~v~lt~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~ 237 (577)
+++++.++++++|++||||||||+|.+++++.|++||.|+|+.+...++++.+++||++|++++++||.||+|||+|.|+
T Consensus 160 ~~~~~~~~~~iaIl~Dl~GPkIRig~~~~~i~l~~G~~v~lt~~~~~g~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~ 239 (581)
T PLN02623 160 EYNAQSKDNVIAIMLDTKGPEVRSGDLPQPIMLEEGQEFTFTIKRGVSTEDCVSVNYDDFVNDVEVGDMLLVDGGMMSLA 239 (581)
T ss_pred HHHHHcCCCceEEEecCCCCceecccCCCCEEecCCCEEEEecCccCCCCCEEeechHHHHhhCCCCCEEEEeCCeEEEE
Confidence 99999755899999999999999999988999999999999987666788899999999999999999999999999999
Q ss_pred EEEEeCCeEEEEEeeCcEeccCceeeeCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCC
Q 008112 238 VKSKTEDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGAD 317 (577)
Q Consensus 238 V~~v~~~~v~~~v~~gG~l~s~Kginlp~~~~~lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~ 317 (577)
|++++++.++|+|++||.|+++||||+||+.+++|.|||||++||+|++++|+|||++|||++++||+++++|+...|.+
T Consensus 240 V~~~~~~~v~~~V~~gG~L~s~KgvNlpg~~~~lp~lTekD~~di~f~~~~~vD~ialSFVr~a~DV~~~r~~l~~~~~~ 319 (581)
T PLN02623 240 VKSKTSDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWEDIKFGVENKVDFYAVSFVKDAQVVHELKDYLKSCNAD 319 (581)
T ss_pred EEEEECCEEEEEEEeceEecCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHh
Q 008112 318 IHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAE 397 (577)
Q Consensus 318 i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAE 397 (577)
+.||+||||++||+|+|+|++.+|||||||||||+++|+++++.+|++|+++|+++|||+|+||||||||+.+|.|||||
T Consensus 320 ~~iiakIEt~eaVeNldeIl~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAE 399 (581)
T PLN02623 320 IHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAE 399 (581)
T ss_pred ceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccCCChhHHHHHHHHHHHhhcCce
Q 008112 398 VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTS 477 (577)
Q Consensus 398 v~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~aa 477 (577)
++|++|++.+|+|++|||+||+.|+||+|||++|++||.++|+.+++...+..+......+..+++|.+|+++|+.++++
T Consensus 400 v~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~sA~~~A~~l~a~ 479 (581)
T PLN02623 400 VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQAFKNHMSEMFAFHATMMANTLGTS 479 (581)
T ss_pred HHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcccchhhhhhccccCCChHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999987544322211111122356799999999999999999
Q ss_pred EEEEcCChHHHHHHHhhCCCCeEEEEcCcHHHhhhhcccCCeeEEEeccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Q 008112 478 IVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVALLQ 557 (577)
Q Consensus 478 IiV~T~sG~tA~~is~~RP~~PIIAvT~~~~taR~L~L~~GV~Pvl~~~~~d~d~~i~~al~~l~e~Gllk~GD~VVvv~ 557 (577)
||+||+||+||+++|||||.|||||+|++++++|+|+|+|||+|+++++..+.+++++.+++++++.|++++||.|++++
T Consensus 480 Ivv~T~sG~tA~~lSr~RP~~pI~avT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~a~~~~~~~g~v~~GD~vviv~ 559 (581)
T PLN02623 480 IIVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLALYQGVCPIYMQFSDDAEETFARALSLLLNKGMVKEGEEVALVQ 559 (581)
T ss_pred EEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccccEEEecCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred cCCCCCCCCCCcceEEEEEC
Q 008112 558 SGRQPIWRFQSTHNIQVRKV 577 (577)
Q Consensus 558 G~~~p~~~~G~tn~irv~~V 577 (577)
|+.+|.|..|.||+++|++|
T Consensus 560 g~~~p~~~~g~tn~i~V~~v 579 (581)
T PLN02623 560 SGRQPIWRSESTHHIQVRKV 579 (581)
T ss_pred ccCCCCCCCCCCeEEEEEEe
Confidence 75457788899999999875
No 2
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=2.9e-133 Score=1087.96 Aligned_cols=466 Identities=47% Similarity=0.733 Sum_probs=438.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHhcCCCeeEEEeecCCCeeEEeecCC
Q 008112 107 RRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ 186 (577)
Q Consensus 107 ~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~ 186 (577)
+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++ ++++||+||||||||+|.+++
T Consensus 24 ~rrTKIV~TiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~iR~~~~~~~-~~vaIl~Dl~GPkIR~g~~~~ 102 (509)
T PLN02762 24 TRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEKG-FAVAVMMDTEGSEIHMGDLGG 102 (509)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CceEEEecCCCCceEEEecCC
Confidence 7899999999999999999999999999999999999999999999999999999998 999999999999999999975
Q ss_pred --cEEEcCCCEEEEEEecCCC--CceEEeccccccccccCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeccCcee
Q 008112 187 --PITLTSGQEFTFTIQRGVG--SAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHL 262 (577)
Q Consensus 187 --~i~L~~G~~v~lt~~~~~~--~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~v~~~v~~gG~l~s~Kgi 262 (577)
++.|++||.|+|+.+...+ +++.+++||++|++.|++||.||+|||.|.|+|++++++.+.|+|.+||.|++||||
T Consensus 103 ~~~i~l~~G~~v~lt~~~~~g~~~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~v~~~G~l~~~Kgv 182 (509)
T PLN02762 103 ASSAKAEDGEEWTFTVRKFDGSRPEFTIQVNYDGFAEDVKVGDELVVDGGMVRFEVIEKIGPDVKCKCTDPGLLLPRANL 182 (509)
T ss_pred CccEEecCCCEEEEeCCccCCCCCCcEEeechHHHHHhcCCCCEEEEeCCEEEEEEEEEECCEEEEEEEeCcEEcCCCce
Confidence 6999999999999864334 457899999999999999999999999999999999999999999999999999999
Q ss_pred ee-------CCCCCCCCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCC--CceEEEeecChhhHhhH
Q 008112 263 NV-------RGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA--DIHVIVKIESADSIPNL 333 (577)
Q Consensus 263 nl-------p~~~~~lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~--~i~IiaKIEt~~gv~Nl 333 (577)
|+ ||+.+++|.|||||++||+||+++|+|||++|||++++||.++|+++.+.|. +++||||||+++|++||
T Consensus 183 Nl~~~g~~~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl 262 (509)
T PLN02762 183 TFWRDGSLVRERNAMLPTISSKDWLDIDFGISEGVDFIAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNL 262 (509)
T ss_pred eeccccCCCCCCccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHH
Confidence 99 9999999999999999999999999999999999999999999999998775 79999999999999999
Q ss_pred HHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEE
Q 008112 334 HSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVM 413 (577)
Q Consensus 334 deIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~im 413 (577)
|||++++|||||||||||+|+|+++||.+||+||++|+++|||||+||||||||++||+|||||++||||||+||+||+|
T Consensus 263 ~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavM 342 (509)
T PLN02762 263 EEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALM 342 (509)
T ss_pred HHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCCCCHHHHHHHHHHHHHHHhccccCCCCCC-----CCCcccCCChhHHHHHHHHHHHhhcCc-eEEEEcCChHH
Q 008112 414 LSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPP-----NLGQAFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFM 487 (577)
Q Consensus 414 Ls~ETa~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~-----~l~~~~~~~~~~~ia~~a~~~a~~~~a-aIiV~T~sG~t 487 (577)
||+|||+|+||+|||++|++||+++|++..+...+. ........+..+++|.+|+++|+.+++ +||+||+||+|
T Consensus 343 LSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~aia~sa~~~A~~l~a~aIv~~T~sG~t 422 (509)
T PLN02762 343 LSGESAMGLYPEKALSVLRSVSLRMELWSREEKRHEALELPQLSSSLSDRISEEICNSAAKMANNLGVDAIFVYTKHGHM 422 (509)
T ss_pred EcchhcCCCCHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhccccccccchHHHHHHHHHHHHhhcCCCEEEEECCCcHH
Confidence 999999999999999999999999998643211111 110011125679999999999999999 99999999999
Q ss_pred HHHHHhhCCCCeEEEEcCcHHHhhhhcccCCeeEEEeccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCC
Q 008112 488 AILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVALLQSGRQPIWRFQ 567 (577)
Q Consensus 488 A~~is~~RP~~PIIAvT~~~~taR~L~L~~GV~Pvl~~~~~d~d~~i~~al~~l~e~Gllk~GD~VVvv~G~~~p~~~~G 567 (577)
|+++|||||.+||||+|++++++|+|+|+|||+|++.++..+.+++++.+++++++.|++++||.||+++|. |. +|
T Consensus 423 A~~iSk~RP~~pIia~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~GD~VVv~~g~--~~--~g 498 (509)
T PLN02762 423 ASLLSRNRPDCPIFAFTDTTSVRRRLNLQWGLIPFRLDFSDDMESNLNKTFSLLKARGMIKSGDLVIAVSDL--TP--SS 498 (509)
T ss_pred HHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC--CC--CC
Confidence 999999999999999999999999999999999999988889999999999999999999999999999995 43 89
Q ss_pred CcceEEEEEC
Q 008112 568 STHNIQVRKV 577 (577)
Q Consensus 568 ~tn~irv~~V 577 (577)
.||+|+|++|
T Consensus 499 ~tn~i~v~~v 508 (509)
T PLN02762 499 MLQSIQVRNV 508 (509)
T ss_pred CceEEEEEEc
Confidence 9999999976
No 3
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=7.6e-133 Score=1084.21 Aligned_cols=473 Identities=37% Similarity=0.589 Sum_probs=444.0
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHhcCCCeeEEEeecCCCeeEEe
Q 008112 103 KPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSG 182 (577)
Q Consensus 103 ~~~~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~g 182 (577)
.+..+|||||||||||+|+++|+|++|+++|||+||||||||++|+|+++++++|+++++..+++++|++||||||||+|
T Consensus 33 ~~~~~rktKIi~TiGPas~~~e~l~~mi~aGm~v~RlN~SHg~~e~~~~~i~~vR~~~~~~~~~~iaIl~Dl~GPkiR~g 112 (513)
T PTZ00066 33 NDLRQKKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKKTLNNVREAAKARPNANLGILLDTKGPEIRTG 112 (513)
T ss_pred CcccCCCCeEEEeeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCceEEEeeCCCCceeec
Confidence 33458999999999999999999999999999999999999999999999999999999963399999999999999999
Q ss_pred ecCC--cEEEcCCCEEEEEEec-CCCCceEEeccccccccccCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeccC
Q 008112 183 DLPQ--PITLTSGQEFTFTIQR-GVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSR 259 (577)
Q Consensus 183 ~~~~--~i~L~~G~~v~lt~~~-~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~v~~~v~~gG~l~s~ 259 (577)
.+++ ++.|++|+.|+|+.+. ..++++.+++||++|++.+++||+||+|||+|.|+|++++++.+.|+|++||.|+++
T Consensus 113 ~~~~~~~i~l~~G~~~~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~v~~gG~l~~~ 192 (513)
T PTZ00066 113 FLKNHKPITLKEGQTLKITTDYTFLGDETCISCSYKKLPQSVKVGNIILIADGSLSCKVLEVHDDYIITKVLNNATIGER 192 (513)
T ss_pred ccCCCCeEEeCCCCEEEEecCCccCCCCcEEecchHHHHhhccCCCEEEEeCCEEEEEEEEEECCEEEEEEEeCcEEcCC
Confidence 9975 6999999999999873 356778999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeCCCCCCCCCCCccCHHHH-HHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHH
Q 008112 260 RHLNVRGKSATLPSITEKDWDDI-KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT 338 (577)
Q Consensus 260 Kginlp~~~~~lp~ltekD~~dI-~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~ 338 (577)
||||+||+.+++|.|||||++|| +|++++|+|||++|||++++||.++|+++++.|.+++|||||||++|++|||||++
T Consensus 193 Kgvnlpg~~~~lp~ltekD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl~ 272 (513)
T PTZ00066 193 KNMNLPGVKVELPVIGEKDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILA 272 (513)
T ss_pred cccccCCCccCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHHH
Confidence 99999999999999999999998 89999999999999999999999999999998889999999999999999999999
Q ss_pred hcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEecccc
Q 008112 339 ASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGET 418 (577)
Q Consensus 339 ~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ET 418 (577)
++|||||||||||+|+|+|+||.+||+||++|+++|||||+||||||||++||+|||||++||||||+||+||+|||+||
T Consensus 273 ~sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgET 352 (513)
T PTZ00066 273 ESDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGET 352 (513)
T ss_pred hcCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhccccCCCCCCCCC--cccCCChhHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhC
Q 008112 419 AHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLG--QAFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYR 495 (577)
Q Consensus 419 a~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~l~--~~~~~~~~~~ia~~a~~~a~~~~a-aIiV~T~sG~tA~~is~~R 495 (577)
|.|+||+|||++|++||+++|+.+++..++.... .....+..+++|.+|+++|+.+++ +||+||+||+||+++||||
T Consensus 353 A~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~A~~l~a~aIv~~T~SG~TAr~iSk~R 432 (513)
T PTZ00066 353 ANGKFPVEAVNIMAKICFEAETCIDYRVLYHAIHLAVPTPVSVQEAVARSAVETAEDINAKLIIALTETGNTARLISKYR 432 (513)
T ss_pred cCCcCHHHHHHHHHHHHHHHhhccchHHhhhhhhccccCCCchhhHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhC
Confidence 9999999999999999999998654432222111 001123578999999999999999 9999999999999999999
Q ss_pred CCCeEEEEcCcHHHhhhhcccCCeeEEEeccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCcceEEEE
Q 008112 496 PSGTIFAFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVALLQSGRQPIWRFQSTHNIQVR 575 (577)
Q Consensus 496 P~~PIIAvT~~~~taR~L~L~~GV~Pvl~~~~~d~d~~i~~al~~l~e~Gllk~GD~VVvv~G~~~p~~~~G~tn~irv~ 575 (577)
|.|||||+|++++++|+|+|+|||+|++++...+.+++++.|++++++.|++++||.||+++|. |....|.||++||.
T Consensus 433 P~~pIia~t~~~~~~R~L~L~wGV~p~~~~~~~~~~~~i~~a~~~~~~~g~~~~GD~vVv~~g~--~~~~~g~tn~irv~ 510 (513)
T PTZ00066 433 PSCTILALSASPSVVKSLSVARGVTTYVVNSFQGTDVVIRNAIALAKERGLVESGDSAIAVHGV--KEEVAGSSNLMKVV 510 (513)
T ss_pred CCCCEEEECCCHHHHHHhhcccCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC--CCCCCCCCeEEEEE
Confidence 9999999999999999999999999999988889999999999999999999999999999995 65667999999998
Q ss_pred EC
Q 008112 576 KV 577 (577)
Q Consensus 576 ~V 577 (577)
.|
T Consensus 511 ~v 512 (513)
T PTZ00066 511 KI 512 (513)
T ss_pred Ec
Confidence 76
No 4
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=2e-130 Score=1060.74 Aligned_cols=465 Identities=40% Similarity=0.642 Sum_probs=439.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHhcCCCeeEEEeecCCCeeEEeecCC
Q 008112 107 RRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ 186 (577)
Q Consensus 107 ~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~ 186 (577)
||||||||||||+|+++|+|++|+++|||+||||||||++++|.++|+++|+++++++ ++++|++||||||||+|.+++
T Consensus 1 mr~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~sHg~~~~~~~~i~~vr~~~~~~~-~~i~Il~Dl~GPkiR~g~~~~ 79 (470)
T PRK09206 1 MKKTKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKTG-KKAAILLDTKGPEIRTMKLEG 79 (470)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEeeCCCCceeccccCC
Confidence 6899999999999999999999999999999999999999999999999999999998 999999999999999999975
Q ss_pred --cEEEcCCCEEEEEEecC-CCCceEEeccccccccccCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeccCceee
Q 008112 187 --PITLTSGQEFTFTIQRG-VGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLN 263 (577)
Q Consensus 187 --~i~L~~G~~v~lt~~~~-~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~v~~~v~~gG~l~s~Kgin 263 (577)
++.|++|+.|+|+.+.. .++.+.++++|++|++.+++||.||+|||+|.|+|++++++.+.|+|++||.|++|||||
T Consensus 80 ~~~i~l~~G~~~~l~~~~~~~~~~~~i~~~~~~~~~~v~~G~~i~idDG~i~l~V~~~~~~~v~~~v~~~G~l~s~Kgvn 159 (470)
T PRK09206 80 GNDVSLKAGQTFTFTTDKSVVGNKERVAVTYEGFTADLSVGNTVLVDDGLIGMEVTAITGNEVICKVLNNGDLGENKGVN 159 (470)
T ss_pred CCeeeecCCCEEEEEecCccCCCCCEEEechHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEEEEEEEECCEecCCCcee
Confidence 59999999999998743 467789999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcC-CCceEEEeecChhhHhhHHHHHHhcCE
Q 008112 264 VRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCG-ADIHVIVKIESADSIPNLHSIITASDG 342 (577)
Q Consensus 264 lp~~~~~lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~-~~i~IiaKIEt~~gv~NldeIl~~sDG 342 (577)
+||+.+++|+|||||++||+|++++|+|||++||||+++||+++++++.+.| .++.||+||||++|++|+|+|++++||
T Consensus 160 ~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~~Dg 239 (470)
T PRK09206 160 LPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEASDG 239 (470)
T ss_pred ccCcccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhCCE
Confidence 9999999999999999999999999999999999999999999999999887 589999999999999999999999999
Q ss_pred EEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCC
Q 008112 343 AMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 422 (577)
Q Consensus 343 ImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~ 422 (577)
|||||||||+|+|++++|.+||+|+++|+++|||+|+||||||||++||.|||||++||||||+||+||+|||+|||+|+
T Consensus 240 ImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~ 319 (470)
T PRK09206 240 IMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGK 319 (470)
T ss_pred EEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccccCCCCCCCCCcccCCChhHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCCCCeEE
Q 008112 423 FPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRPSGTIF 501 (577)
Q Consensus 423 yP~eaV~~m~~I~~~aE~~~~~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~a-aIiV~T~sG~tA~~is~~RP~~PII 501 (577)
||+|||++|++||+++|+.+.+. +... ......+..+++|.+|+++|+++++ +||+||+||+||+++|||||.+|||
T Consensus 320 yPveaV~~m~~I~~~~E~~~~~~-~~~~-~~~~~~~~~~~ia~sa~~~A~~l~a~aIv~~T~sG~tA~~is~~RP~~pIi 397 (470)
T PRK09206 320 YPLEAVSIMATICERTDRVMNSR-LESN-NDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARSVRKYFPDATIL 397 (470)
T ss_pred CHHHHHHHHHHHHHHHHhhcchh-hhhh-ccccCCChHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCCCCEE
Confidence 99999999999999999865432 1110 0011135789999999999999999 9999999999999999999999999
Q ss_pred EEcCcHHHhhhhcccCCeeEEEeccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCcceEEEEEC
Q 008112 502 AFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVALLQSGRQPIWRFQSTHNIQVRKV 577 (577)
Q Consensus 502 AvT~~~~taR~L~L~~GV~Pvl~~~~~d~d~~i~~al~~l~e~Gllk~GD~VVvv~G~~~p~~~~G~tn~irv~~V 577 (577)
|+|++++++|+|+|+|||+|++++...+.++++..+++++++.|++++||.||+++|. + ...|+||++||+..
T Consensus 398 a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~Gd~vvv~~g~--~-~~~g~tn~i~v~~~ 470 (470)
T PRK09206 398 ALTTNEKTARQLVLSKGVVPQLVKEIASTDDFYRLGKELALQSGLAQKGDVVVMVSGA--L-VPSGTTNTASVHVL 470 (470)
T ss_pred EECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC--C-CCCCCCeEEEEEEC
Confidence 9999999999999999999999987788999999999999999999999999999995 4 56799999999863
No 5
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=1.6e-130 Score=1060.48 Aligned_cols=466 Identities=36% Similarity=0.584 Sum_probs=440.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHhcCCCeeEEEeecCCCeeEEeecC
Q 008112 106 VRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLP 185 (577)
Q Consensus 106 ~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~g~~~ 185 (577)
++|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++ ++++|++||||||||+|.++
T Consensus 3 ~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~~~~~i~~vr~~~~~~~-~~i~Il~Dl~GpkiR~g~~~ 81 (476)
T PRK06247 3 RNRRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDETG-RPIGILADLQGPKLRLGRFA 81 (476)
T ss_pred CCCCceEEEEECCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CCeeEEEeCCCCceeccccC
Confidence 47899999999999999999999999999999999999999999999999999999998 99999999999999999997
Q ss_pred C-cEEEcCCCEEEEEEecCCCCceEEeccccccccccCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeccCceeee
Q 008112 186 Q-PITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLNV 264 (577)
Q Consensus 186 ~-~i~L~~G~~v~lt~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~v~~~v~~gG~l~s~Kginl 264 (577)
+ +++|++||.|+|+.+...++++.+++||++|++++++||+||+|||+|.|+|++++++.+.|+|++||.|++|||||+
T Consensus 82 ~~~i~l~~G~~~~l~~~~~~~~~~~i~v~~~~l~~~v~~G~~I~idDG~i~l~V~~~~~~~i~~~v~~~G~l~~~Kgvn~ 161 (476)
T PRK06247 82 DGKVQLANGQTFRLDVDDAPGDHDRVSLPHPEIAAALKPGDRLLVDDGKVRLVVEACDGDDVVCRVVEGGPVSDRKGVSL 161 (476)
T ss_pred CCcEeccCCCEEEEEecccCCCCCEeecChhHhHhhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCCcccc
Confidence 5 699999999999988656788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEE
Q 008112 265 RGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAM 344 (577)
Q Consensus 265 p~~~~~lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGIm 344 (577)
||+.+++|.||+||++||+|++++|+|||++|||++++||.++|++++ .++.|||||||++|++|+|+|++++||||
T Consensus 162 p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~a~Di~~~r~~l~---~~~~iiaKIEt~eav~nldeI~~~~DgIm 238 (476)
T PRK06247 162 PGTVLSVSALTEKDRADLEFALELGVDWVALSFVQRPEDVEEVRKIIG---GRVPVMAKIEKPQAIDRLEAIVEASDAIM 238 (476)
T ss_pred CCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhh---hcCeEEEEECCHHHHHhHHHHHHHcCEEE
Confidence 999999999999999999999999999999999999999999999994 47899999999999999999999999999
Q ss_pred EcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCH
Q 008112 345 VARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 424 (577)
Q Consensus 345 IaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP 424 (577)
|||||||+++|+++|+.+||+|+++|+++|||+|+||||||||++||.|||||++||||||+||+||+|||+|||+|+||
T Consensus 239 VaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~G~yP 318 (476)
T PRK06247 239 VARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETASGKYP 318 (476)
T ss_pred EccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchhcCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCcccCCChhHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCCCCeEEEE
Q 008112 425 LKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRPSGTIFAF 503 (577)
Q Consensus 425 ~eaV~~m~~I~~~aE~~~~~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~a-aIiV~T~sG~tA~~is~~RP~~PIIAv 503 (577)
++||++|++||+++|+++++...+.........+..+++|++|+++|+.+++ +||+||+||+||+++|||||.|||||+
T Consensus 319 veaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~sa~~~A~~l~a~~Iv~~T~sG~ta~~isk~RP~~pI~a~ 398 (476)
T PRK06247 319 VEAVRTMARIIRQVERDPTYPPLIHAQRPQPEATKRDAISYAARDIAERLDLAALVAYTSSGDTALRAARERPPLPILAL 398 (476)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhhcccccCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCcHHHHHHHhhCCCCCEEEE
Confidence 9999999999999998654432221111111235678999999999999999 999999999999999999999999999
Q ss_pred cCcHHHhhhhcccCCeeEEEeccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCcceEEEEEC
Q 008112 504 TNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVALLQSGRQPIWRFQSTHNIQVRKV 577 (577)
Q Consensus 504 T~~~~taR~L~L~~GV~Pvl~~~~~d~d~~i~~al~~l~e~Gllk~GD~VVvv~G~~~p~~~~G~tn~irv~~V 577 (577)
|++++++|+|+|+|||+|++++...+.++++..+++++++.|++++||.||+++|. |.+..|.||+++|..|
T Consensus 399 t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~Gd~vvv~~g~--~~~~~g~tn~i~v~~v 470 (476)
T PRK06247 399 TPNPETARRLALTWGVHCVVVDDARDTDDMVRRADRIALAEGFYKRGDRVVIVAGV--PPGTPGSTNMLRIAYI 470 (476)
T ss_pred CCCHHHHHHhhcccCCeeEecCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC--CCCCCCCCeEEEEEEe
Confidence 99999999999999999999988889999999999999999999999999999985 6677899999999875
No 6
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-130 Score=1055.82 Aligned_cols=470 Identities=44% Similarity=0.691 Sum_probs=445.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHhcCCCeeEEEeecCCCeeEEeec
Q 008112 105 TVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDL 184 (577)
Q Consensus 105 ~~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~g~~ 184 (577)
..+|||||||||||+++++|+|++|+++||||||||||||++++|.+.++++|+++++++ +|++||+||||||||+|.+
T Consensus 2 ~~~~kTKIVaTiGPas~s~e~l~~li~aG~nV~RlNfSHG~~e~h~~~i~~vR~~~~~~~-~~vaIl~DlkGPkIR~g~~ 80 (477)
T COG0469 2 RMMRKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKKRIDNVREAAEKLG-RPVAILLDLKGPKIRTGKF 80 (477)
T ss_pred CCCccceEEEEECCCCCCHHHHHHHHHccCcEEEEecCCCChHHHHHHHHHHHHHHHHhC-CceEEEEcCCCCcceeEec
Confidence 358999999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CC-cEEEcCCCEEEEEEecC--CCCceEEeccccccccccCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeccCce
Q 008112 185 PQ-PITLTSGQEFTFTIQRG--VGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRH 261 (577)
Q Consensus 185 ~~-~i~L~~G~~v~lt~~~~--~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~v~~~v~~gG~l~s~Kg 261 (577)
.+ .++|++|++|+|+.+.. .++++.+|++|++|+++|++||+||+|||+++|+|.+++++.+.|+|.+||.|++|||
T Consensus 81 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~v~v~y~~l~~dV~~G~~iLlDDG~i~l~V~~v~~~~v~~~v~n~G~l~~~Kg 160 (477)
T COG0469 81 KGGAVELEKGEKFTLTTDDKVGEGDEERVSVDYKDLAKDVKPGDRILLDDGKIELRVVEVDGDAVITRVLNGGVLSSNKG 160 (477)
T ss_pred CCCcEEeecCCEEEEeccccccCCCCcEEeccHHHHHhhcCCCCEEEEeCCeeEEEEEEeeCCEEEEEEEeCCCccCCCc
Confidence 85 69999999999998865 3457899999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCC-ceEEEeecChhhHhhHHHHHHhc
Q 008112 262 LNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGAD-IHVIVKIESADSIPNLHSIITAS 340 (577)
Q Consensus 262 inlp~~~~~lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~-i~IiaKIEt~~gv~NldeIl~~s 340 (577)
||+||..+++|+|||||++||+|++++|+|||++|||++++|++++|+++.+.+.. ++||||||+++||+|||+|+++|
T Consensus 161 vN~pg~~l~~palteKD~~dl~f~~~~gvD~vA~SFVr~~~Dv~~~R~~l~~~~~~~~~iiaKIE~~eav~NldeIi~~S 240 (477)
T COG0469 161 VNLPGVDLSLPALTEKDKEDLKFGLEQGVDFVALSFVRNAEDVEEVREILAETGGRDVKIIAKIENQEAVDNLDEIIEAS 240 (477)
T ss_pred eecCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCCCceEEEeecCHHHHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999877655 99999999999999999999999
Q ss_pred CEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCC
Q 008112 341 DGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAH 420 (577)
Q Consensus 341 DGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~ 420 (577)
|||||||||||+|+|+++||.+||+||++|+.+|||||+||||||||++||+|||||++||||||.||+|++|||+|||.
T Consensus 241 DGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ETA~ 320 (477)
T COG0469 241 DGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAA 320 (477)
T ss_pred CceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCceeeechhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccCCChhHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCCCCe
Q 008112 421 GKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRPSGT 499 (577)
Q Consensus 421 G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~a-aIiV~T~sG~tA~~is~~RP~~P 499 (577)
|+||+|||++|++||.++|+.+.+.+++.........+..++++.+++.+|+.+++ +|+++|.||+||+++|||||.+|
T Consensus 321 G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~e~ia~aa~~~a~~l~~k~iv~~T~sG~ta~~isk~Rp~~p 400 (477)
T COG0469 321 GKYPVEAVATMARIAKEAEKELPDNQLLRFRVDPPDSSITEAIALAAVDIAEKLDAKAIVTLTESGRTARLLSKYRPEAP 400 (477)
T ss_pred CCCHHHHHHHHHHHHHHHhcccchhhhhhhccccccccHHHHHHHHHHHHHHhcCCcEEEEEcCCCHHHHHHhcCCCCCc
Confidence 99999999999999999999886332222111122345789999999999999998 99999999999999999999999
Q ss_pred EEEEcCcHHHhhhhcccCCeeEEEec-cCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCcceEEEEEC
Q 008112 500 IFAFTNEKRIQQRLSLYQGVCPIYME-FSDDAEETFDNALGLLQKQGMVKEGEEVALLQSGRQPIWRFQSTHNIQVRKV 577 (577)
Q Consensus 500 IIAvT~~~~taR~L~L~~GV~Pvl~~-~~~d~d~~i~~al~~l~e~Gllk~GD~VVvv~G~~~p~~~~G~tn~irv~~V 577 (577)
|||+|++++++|+|+|+|||+|++++ +..+.++++..+++.+.+.|+++.||.|++++|. |+...|.||++||+.|
T Consensus 401 Iia~t~~~~v~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gD~vvit~G~--~~~~~G~tn~ikv~~v 477 (477)
T COG0469 401 IIALTPNERVARRLALVWGVYPLLVEEKPTSTDEMVEEAVEKLLESGLVKKGDLVVITAGV--PMGTVGTTNTIKVLTV 477 (477)
T ss_pred EEEECCCHHHHhhhceeecceeEEecCCCCcHHHHHHHHHHHHHhcCcccCCCEEEEecCc--ccccCCCceeEEEEeC
Confidence 99999999999999999999999997 6889999999999999999999999999999995 8889999999999976
No 7
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=1.3e-129 Score=1059.91 Aligned_cols=464 Identities=39% Similarity=0.611 Sum_probs=435.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHhcCCCeeEEEeecCCCeeEEeecC
Q 008112 106 VRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLP 185 (577)
Q Consensus 106 ~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~g~~~ 185 (577)
++|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++.+ ++++|++||||||||+|.++
T Consensus 19 ~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~h~~~i~~vr~~~~~~g-~~i~Il~Dl~GPkIR~g~~~ 97 (511)
T PLN02461 19 RRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGSHEYHQETLDNLRQAMANTG-ILCAVMLDTKGPEIRTGFLK 97 (511)
T ss_pred cCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CCeEEEeeCCCCceeccccC
Confidence 48999999999999999999999999999999999999999999999999999999998 99999999999999999997
Q ss_pred C--cEEEcCCCEEEEEEec-CCCCceEEeccccccccccCCCCEEEEeCCeEEEEEEEEe--CCeEEEEEeeCcEeccCc
Q 008112 186 Q--PITLTSGQEFTFTIQR-GVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKT--EDSVKCEVVDGGELKSRR 260 (577)
Q Consensus 186 ~--~i~L~~G~~v~lt~~~-~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~--~~~v~~~v~~gG~l~s~K 260 (577)
+ ++.|++||.++|+.+. ..++++.+++||++|++.+++||.||+|||+|.|+|++++ ++.++|+|.+||.|+++|
T Consensus 98 ~~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~~~~~v~~Gd~IlidDG~i~l~V~~~~~~~~~i~~~v~~gG~l~s~K 177 (511)
T PLN02461 98 DGKPVQLKQGQEITITTDYSIKGDENMIAMSYKKLAVDVKPGSVILCADGTITLTVLSCDVEAGTVRCRCENSAMLGERK 177 (511)
T ss_pred CCCceecCCCCEEEEecCCccCCCCCEEEeccHHHHhhcCCCCEEEEeCCEEEEEEEEEecCCCEEEEEEecCcEecCCc
Confidence 5 5999999999999873 3467789999999999999999999999999999999987 689999999999999999
Q ss_pred eeeeCCCCCCCCCCCccCHHHH-HHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh
Q 008112 261 HLNVRGKSATLPSITEKDWDDI-KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA 339 (577)
Q Consensus 261 ginlp~~~~~lp~ltekD~~dI-~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~ 339 (577)
|||+||+.+++|.|||||++|| +|++++|+|||++||||+++||+++|+++.+.+.+++|||||||++|++||+||+++
T Consensus 178 gvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~l~~~~~~~~IiAKIE~~~av~nl~eIi~~ 257 (511)
T PLN02461 178 NVNLPGVVVDLPTLTEKDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKVLGEHAKSILLISKVENQEGLDNFDDILAE 257 (511)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCCCEEEEECCHHHHHHHHHHHHh
Confidence 9999999999999999999998 799999999999999999999999999999888899999999999999999999999
Q ss_pred cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccC
Q 008112 340 SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETA 419 (577)
Q Consensus 340 sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa 419 (577)
+|||||||||||+|+|+++||.+||+||+.|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|||
T Consensus 258 sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ETA 337 (511)
T PLN02461 258 SDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETA 337 (511)
T ss_pred cCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhccccCCCCCCCCC-cc-cCCChhHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCC
Q 008112 420 HGKFPLKAVKVMHTVSLRTEATITGGAMPPNLG-QA-FKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRP 496 (577)
Q Consensus 420 ~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~l~-~~-~~~~~~~~ia~~a~~~a~~~~a-aIiV~T~sG~tA~~is~~RP 496 (577)
+|+||+|||++|++||+++|+.+++..+|.... .. ...+..+++|.+|+++|+++++ +||+||+||+||+++|||||
T Consensus 338 ~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIiv~T~sG~tA~~iSk~RP 417 (511)
T PLN02461 338 AGAYPELAVKTMARICREAEASLDYGALFKEIMRSAPLPMSPLESLASSAVRTANKVKASLIVVLTRGGTTARLVAKYRP 417 (511)
T ss_pred CCCCHHHHHHHHHHHHHHHHhccchhhhhhhhcccccccCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCC
Confidence 999999999999999999998755433232211 00 1124679999999999999999 99999999999999999999
Q ss_pred CCeEEEEcCc-------------HHHhhhhcccCCeeEEEecc------CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Q 008112 497 SGTIFAFTNE-------------KRIQQRLSLYQGVCPIYMEF------SDDAEETFDNALGLLQKQGMVKEGEEVALLQ 557 (577)
Q Consensus 497 ~~PIIAvT~~-------------~~taR~L~L~~GV~Pvl~~~------~~d~d~~i~~al~~l~e~Gllk~GD~VVvv~ 557 (577)
.|||||+|++ ++++|+|+|+|||+|++++. ..+.+++++.|++++++.|++++||.||+++
T Consensus 418 ~~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~~GV~P~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~ 497 (511)
T PLN02461 418 AVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATDSESTEEILEAAIEHAKKKGLCKPGDSVVALH 497 (511)
T ss_pred CCCEEEEecCcccccccccccCCHHHhhhhheecceEEEEecccccccccCCHHHHHHHHHHHHHHcCCCCCcCEEEEEe
Confidence 9999999966 99999999999999998764 5688999999999999999999999999998
Q ss_pred cCCCCCCCCCCcceEEEEEC
Q 008112 558 SGRQPIWRFQSTHNIQVRKV 577 (577)
Q Consensus 558 G~~~p~~~~G~tn~irv~~V 577 (577)
| .|.||+++|..|
T Consensus 498 ~-------~g~tn~i~v~~v 510 (511)
T PLN02461 498 R-------IGGASVIKILTV 510 (511)
T ss_pred c-------CCCCcEEEEEEe
Confidence 7 378999999875
No 8
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=2.6e-128 Score=1070.19 Aligned_cols=469 Identities=38% Similarity=0.645 Sum_probs=444.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHhcCCCeeEEEeecCCCeeEEeec
Q 008112 105 TVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDL 184 (577)
Q Consensus 105 ~~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~g~~ 184 (577)
..+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++ ++++|++||||||||+|.+
T Consensus 5 ~~~r~tKIi~TiGPas~~~e~l~~li~aG~~v~RlN~sHg~~e~~~~~i~~ir~~~~~~~-~~i~i~~Dl~GpkiR~g~~ 83 (590)
T PRK06354 5 DLMRRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREASKKLG-KTVGILQDLQGPKIRLGRF 83 (590)
T ss_pred CCCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCEEEEeeCCCCceecccc
Confidence 448999999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CC-cEEEcCCCEEEEEEecCCCCceEEeccccccccccCCCCEEEEeCCeEEEEEEEEe--CCeEEEEEeeCcEeccCce
Q 008112 185 PQ-PITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKT--EDSVKCEVVDGGELKSRRH 261 (577)
Q Consensus 185 ~~-~i~L~~G~~v~lt~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~--~~~v~~~v~~gG~l~s~Kg 261 (577)
++ ++.|++||.|+|+.++..++++.+++||++|++.+++||.||+|||+|.|+|++++ ++.++|+|++||.|+++||
T Consensus 84 ~~~~i~l~~G~~~~l~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~~v~~~v~~~g~l~~~Kg 163 (590)
T PRK06354 84 EDGPIELKTGDEFILTSREVLGTQEKFSVTYDGLADEVPVGSRILLDDGLIELEVEEVDKADGELHCKVLVGGVLSNKKG 163 (590)
T ss_pred CCCcEEecCCCEEEEEecccCCCCCEEeechHHHHhhcCCCCEEEEeCCeEEEEEEEEEcCCCEEEEEEEeCeEECCCCc
Confidence 75 79999999999998865677889999999999999999999999999999999988 8999999999999999999
Q ss_pred eeeCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHh-cCCCceEEEeecChhhHhhHHHHHHhc
Q 008112 262 LNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKS-CGADIHVIVKIESADSIPNLHSIITAS 340 (577)
Q Consensus 262 inlp~~~~~lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~-~~~~i~IiaKIEt~~gv~NldeIl~~s 340 (577)
||+||+.+++|.|||||++||+|++++++|||++|||++++||.++++++.+ .+.++.||+||||++|++|+|+|++++
T Consensus 164 vn~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~~ 243 (590)
T PRK06354 164 VNFPGVSLSLPAITEKDREDLIFGLEQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILELC 243 (590)
T ss_pred ccccCCccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999954 578999999999999999999999999
Q ss_pred CEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCC
Q 008112 341 DGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAH 420 (577)
Q Consensus 341 DGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~ 420 (577)
|||||||||||+|+|.++|+.+||+|+++|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|||+
T Consensus 244 DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~ 323 (590)
T PRK06354 244 DGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAA 323 (590)
T ss_pred CEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccCCChhHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCCCCe
Q 008112 421 GKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRPSGT 499 (577)
Q Consensus 421 G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~a-aIiV~T~sG~tA~~is~~RP~~P 499 (577)
|+||++||++|++||+++|+.+++..++..... ...+..+++|.+++++|+++++ +|++||+||+||+++|||||.||
T Consensus 324 G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~-~~~~~~~~ia~aa~~~a~~~~a~~Iv~~T~sG~ta~~vsk~Rp~~p 402 (590)
T PRK06354 324 GDYPVEAVQTMATIAVRIEKDLPYRDILSKRPE-FTTTITNAISQAVSHIALQLDAAAIVTLTKSGATARNVSKYRPKTP 402 (590)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchhhhhhhccc-cCCCHHHHHHHHHHHHHhhcCCCEEEEECCChHHHHHHHhhCCCCC
Confidence 999999999999999999987654433222111 1235678999999999999999 99999999999999999999999
Q ss_pred EEEEcCcHHHhhhhcccCCeeEEEeccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCcceEEEEEC
Q 008112 500 IFAFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVALLQSGRQPIWRFQSTHNIQVRKV 577 (577)
Q Consensus 500 IIAvT~~~~taR~L~L~~GV~Pvl~~~~~d~d~~i~~al~~l~e~Gllk~GD~VVvv~G~~~p~~~~G~tn~irv~~V 577 (577)
|||+|++++++|||+|+|||+|++++...+.+++++.+++++++.|++++||.||+++|. |.+..|.||++||+.|
T Consensus 403 I~a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~gd~vv~~~g~--~~~~~g~tn~~~v~~v 478 (590)
T PRK06354 403 ILAVTPNESVARRLQLVWGVTPLLVLDAPSTDETFDAAINVAQESGLLKQGDLVVITAGT--LVGESGSTDLMKVHVV 478 (590)
T ss_pred EEEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC--CCCcCCCceeEEEEEe
Confidence 999999999999999999999999988888999999999999999999999999999985 6677899999999875
No 9
>PLN02765 pyruvate kinase
Probab=100.00 E-value=3.3e-128 Score=1049.14 Aligned_cols=462 Identities=29% Similarity=0.471 Sum_probs=429.4
Q ss_pred CC-CcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHhcCCCeeEEEeecCCCeeEEeecC
Q 008112 107 RR-KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLP 185 (577)
Q Consensus 107 ~r-~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~g~~~ 185 (577)
+| ||||||||||+|+++|+|++|+++||||||||||||++|+|+++++++|+++++.+ ++++||+||||||||+|.++
T Consensus 26 ~~~~tKIVaTiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~vR~~~~~~~-~~vaIl~Dl~GPkIR~g~~~ 104 (526)
T PLN02765 26 FPALTKIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQETLENLKIAVKNTK-KLCAVMLDTVGPELQVINKT 104 (526)
T ss_pred cCCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEecCCCCceeeeecC
Confidence 44 59999999999999999999999999999999999999999999999999999998 99999999999999999997
Q ss_pred C-cEEEcCCCEEEEEEecC-CCCceEEeccccccccccCCCCEEEEeCC--------eEEEEEEEEeCCeEEEEEeeCcE
Q 008112 186 Q-PITLTSGQEFTFTIQRG-VGSAECVSVNYDDFVNDVEVGDMLLVDGG--------MMSLLVKSKTEDSVKCEVVDGGE 255 (577)
Q Consensus 186 ~-~i~L~~G~~v~lt~~~~-~~~~~~i~v~~~~~~~~v~~Gd~I~idDG--------~i~l~V~~v~~~~v~~~v~~gG~ 255 (577)
+ ++.|++|++|+|+.+.. .++++.+++||++|++.+++||+||+||| +|.|+|++++++.++|+|++||.
T Consensus 105 ~~~i~l~~G~~~~l~~~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~~~g~~dg~i~l~V~~~~~~~v~~~v~~gG~ 184 (526)
T PLN02765 105 EKPISLKAGNTVTLTPDQSKEASSEVLPINFPGLAKAVKPGDTIFVGQYLFTGSETTSVWLEVDEVKGDDVVCTVKNSAT 184 (526)
T ss_pred CCcEecCCCCEEEEecccccCCCCCEEeechHHHHhhcCCCCEEEECCcccccccCceEEEEEEEEECCEEEEEEEeCcE
Confidence 4 69999999999998743 56778999999999999999999999988 89999999999999999999999
Q ss_pred eccC-ceeeeCCCCCCCCCCCccCHHHH-HHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCC-CceEEEeecChhhHhh
Q 008112 256 LKSR-RHLNVRGKSATLPSITEKDWDDI-KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA-DIHVIVKIESADSIPN 332 (577)
Q Consensus 256 l~s~-Kginlp~~~~~lp~ltekD~~dI-~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~-~i~IiaKIEt~~gv~N 332 (577)
|+++ ||||+||+.+++|+|||||++|| +|++++++|||++|||++++||.++|+++.+.|. +++|||||||++|++|
T Consensus 185 L~s~~kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~l~~~g~~~~~IiaKIE~~~av~n 264 (526)
T PLN02765 185 LAGSLFTLHVSQVRIDLPTLSEKDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREFLSSLGLSQTQIFAKIENVEGLTH 264 (526)
T ss_pred ECCCccceeCCCCcCCCCCCcHhHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCCCcEEEEECCHHHHHH
Confidence 9995 89999999999999999999999 6999999999999999999999999999988875 8999999999999999
Q ss_pred HHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceE
Q 008112 333 LHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAV 412 (577)
Q Consensus 333 ldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~i 412 (577)
|++|++++|||||||||||+|+|+++||.+||+||++|+++|||||+ |||||||++||+|||||++||||||+||+||+
T Consensus 265 l~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~-TQmLeSMi~np~PTRAEvsDVaNAV~DGaDav 343 (526)
T PLN02765 265 FDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGADAI 343 (526)
T ss_pred HHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEE-ehhhhHHhhCCCCChhhHHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred EeccccCCCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCc--ccCCChhHHHHHHHHHHHhhcCc-eEEEEcCChHHHH
Q 008112 413 MLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQ--AFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAI 489 (577)
Q Consensus 413 mLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~l~~--~~~~~~~~~ia~~a~~~a~~~~a-aIiV~T~sG~tA~ 489 (577)
|||+|||.|+||++||++|++||+++|+.+++...+..... ....+..+++|.+|+++|+.+++ +|||||+||+||+
T Consensus 344 MLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sav~~A~~l~a~aIvv~T~sG~tAr 423 (526)
T PLN02765 344 LLGAETLRGLYPVETISTVGRICAEAEKVFNQDLYFKKTVKYVGEPMSHLESIASSAVRAAIKVKASVIIVFTSSGRAAR 423 (526)
T ss_pred EecchhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhhhhhcccccCCCHHHHHHHHHHHHHhhCCCCEEEEECCCcHHHH
Confidence 99999999999999999999999999986544322221100 00113468999999999999999 9999999999999
Q ss_pred HHHhhCCCCeEEEEc-Cc------------HHHhhhhcccCCeeEEEeccCCC-------HHHHHHHHHHHHHHcCCCCC
Q 008112 490 LLSHYRPSGTIFAFT-NE------------KRIQQRLSLYQGVCPIYMEFSDD-------AEETFDNALGLLQKQGMVKE 549 (577)
Q Consensus 490 ~is~~RP~~PIIAvT-~~------------~~taR~L~L~~GV~Pvl~~~~~d-------~d~~i~~al~~l~e~Gllk~ 549 (577)
++|||||.|||||+| ++ ++++|||+|+|||+|++++...+ .+.++..+++++++.|++++
T Consensus 424 ~isk~RP~~pIla~t~~~~~~~~~~~~~~~~~~aR~L~L~~GV~P~~~~~~~~~e~~~~~~~~~~~~a~~~~~~~g~~~~ 503 (526)
T PLN02765 424 LIAKYRPTMPVLSVVIPRLKTNQLKWSFTGAFQARQCLIVRGLFPMLADPRHSAESTSATNESVLKVALDHGKAAGVIKS 503 (526)
T ss_pred HHHhhCCCCCEEEEecCcccccccccccCcHHHHHHhhcccCCEEEEeccccccccccccHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999 77 89999999999999999865444 57889999999999999999
Q ss_pred CCEEEEEecCCCCCCCCCCcceEEEEEC
Q 008112 550 GEEVALLQSGRQPIWRFQSTHNIQVRKV 577 (577)
Q Consensus 550 GD~VVvv~G~~~p~~~~G~tn~irv~~V 577 (577)
||.||++++ .|+||++||..|
T Consensus 504 GD~vvv~~~-------~g~tn~i~v~~v 524 (526)
T PLN02765 504 HDRVVVCQK-------VGDSSVVKIIEL 524 (526)
T ss_pred CCEEEEEec-------CCCCceEEEEEc
Confidence 999999975 489999999875
No 10
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=4e-127 Score=1040.19 Aligned_cols=467 Identities=43% Similarity=0.695 Sum_probs=440.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHhcCCCeeEEEeecCCCeeEEeecCC
Q 008112 107 RRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ 186 (577)
Q Consensus 107 ~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~ 186 (577)
||||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++ ++++||+||||||||+|.+++
T Consensus 1 ~~~tkIi~TiGp~s~~~e~l~~li~aG~~v~RiN~sHg~~~~~~~~i~~vr~~~~~~~-~~i~il~Dl~GpkiR~g~~~~ 79 (480)
T cd00288 1 LRRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKTG-GPVAIALDTKGPEIRTGLFKG 79 (480)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEecCCCceeecccCC
Confidence 5899999999999999999999999999999999999999999999999999999999 999999999999999999985
Q ss_pred --cEEEcCCCEEEEEEec--CCCCceEEeccccccccccCCCCEEEEeCCeEEEEEEEEeCC-eEEEEEeeCcEeccCce
Q 008112 187 --PITLTSGQEFTFTIQR--GVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTED-SVKCEVVDGGELKSRRH 261 (577)
Q Consensus 187 --~i~L~~G~~v~lt~~~--~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~-~v~~~v~~gG~l~s~Kg 261 (577)
++.|++||.|+|+.+. ..++.+.|++||++|++.+++||.||+|||+|.|+|++++++ .++|+|.+||.|+++||
T Consensus 80 ~~~i~l~~G~~~~lt~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~i~~~v~~~G~l~~~kg 159 (480)
T cd00288 80 GKDISLKAGDKFLVTTDPAAKKGTKEKIYVDYKNLTKDVSPGNTILVDDGLLSLKVLSKDDDKTLVCEVLNGGVLGSRKG 159 (480)
T ss_pred CCceecCCCCEEEEEecccccCCCCcEEeechHHhHhhcCCCCEEEEeCCEEEEEEEEEcCCceEEEEEEeCeEEcCCCc
Confidence 5999999999999875 357778999999999999999999999999999999999998 99999999999999999
Q ss_pred eeeCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcC
Q 008112 262 LNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASD 341 (577)
Q Consensus 262 inlp~~~~~lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sD 341 (577)
||+||+.+++|.||+||++||+|++++|+|||++|||++++||+++|+++...|.++.+|+||||++|++|+|+|++++|
T Consensus 160 in~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~~D 239 (480)
T cd00288 160 VNLPGTDVDLPALSEKDKADLRFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASD 239 (480)
T ss_pred eEeeCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred EEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCC
Q 008112 342 GAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 421 (577)
Q Consensus 342 GImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G 421 (577)
||||||||||+++|.++++.+|++|+++|+++|||+|+||||||||+++|.|||||++||||||+||+||+|||+|||+|
T Consensus 240 gImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G 319 (480)
T cd00288 240 GIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKG 319 (480)
T ss_pred EEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhccccCCCCCCCCCcc--cCCChhHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCCCC
Q 008112 422 KFPLKAVKVMHTVSLRTEATITGGAMPPNLGQA--FKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRPSG 498 (577)
Q Consensus 422 ~yP~eaV~~m~~I~~~aE~~~~~~~~~~~l~~~--~~~~~~~~ia~~a~~~a~~~~a-aIiV~T~sG~tA~~is~~RP~~ 498 (577)
+||++||++|++||+++|+.+++...+...... ...+..+++|.+|+++|+++++ +||+||+||+||+++|+|||.+
T Consensus 320 ~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sAv~~A~~l~akaIVv~T~SG~TA~~lS~~RP~~ 399 (480)
T cd00288 320 KYPVEAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTSTTEAVAMSAVRAAFELGAKAIVVLTTSGRTARLVSKYRPNA 399 (480)
T ss_pred CCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHhhCCCC
Confidence 999999999999999999865443222211111 1114679999999999999999 9999999999999999999999
Q ss_pred eEEEEcCcHHHhhhhcccCCeeEEEeccC-----CCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCcceEE
Q 008112 499 TIFAFTNEKRIQQRLSLYQGVCPIYMEFS-----DDAEETFDNALGLLQKQGMVKEGEEVALLQSGRQPIWRFQSTHNIQ 573 (577)
Q Consensus 499 PIIAvT~~~~taR~L~L~~GV~Pvl~~~~-----~d~d~~i~~al~~l~e~Gllk~GD~VVvv~G~~~p~~~~G~tn~ir 573 (577)
||||+|++++++|+|+|+|||+|++++.. .+.++++..+.+++++.|++++||.||+++|. |. ..|.||++|
T Consensus 400 pIiavT~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gd~vv~~~g~--~~-~~~~tn~i~ 476 (480)
T cd00288 400 PIIAVTRNEQTARQLHLYRGVYPVLFEEPKPGWQEDTDARLKAAVNVAKEKGLLKKGDLVVVVQGW--PV-GSGSTNTMR 476 (480)
T ss_pred CEEEEcCCHHHhhheeeccCcEEEEecccccccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC--CC-CCCCCeEEE
Confidence 99999999999999999999999988655 78999999999999999999999999999995 54 669999999
Q ss_pred EEEC
Q 008112 574 VRKV 577 (577)
Q Consensus 574 v~~V 577 (577)
|+.|
T Consensus 477 v~~~ 480 (480)
T cd00288 477 ILTV 480 (480)
T ss_pred EEEC
Confidence 9876
No 11
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=9.5e-126 Score=1026.00 Aligned_cols=452 Identities=44% Similarity=0.697 Sum_probs=430.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHhcCCCeeEEEeecCCCeeEEeecC
Q 008112 106 VRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLP 185 (577)
Q Consensus 106 ~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~g~~~ 185 (577)
.+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++ +|++|++||||||||+|.++
T Consensus 2 ~~~~tkIi~TiGp~s~~~e~l~~li~~G~~v~RiN~sHg~~~~~~~~i~~ir~~~~~~~-~~i~I~~Dl~GpkiR~g~~~ 80 (465)
T PRK05826 2 MLRRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRAALVREIAAKLG-RPVAILLDLKGPKIRVGKFK 80 (465)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCceeecccc
Confidence 47899999999999999999999999999999999999999999999999999999998 99999999999999999997
Q ss_pred C-cEEEcCCCEEEEEEec-CCCCceEEeccccccccccCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeccCceee
Q 008112 186 Q-PITLTSGQEFTFTIQR-GVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLN 263 (577)
Q Consensus 186 ~-~i~L~~G~~v~lt~~~-~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~v~~~v~~gG~l~s~Kgin 263 (577)
+ ++.|++|++|+|+.++ ..++++.|++||++|++++++||.||+|||+|.|+|++++++.++|+|++||.|+++||||
T Consensus 81 ~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~ilidDG~i~l~V~~~~~~~v~~~v~~~g~l~s~kgvn 160 (465)
T PRK05826 81 EGKITLKTGDKFTLDTDQKEEGDKERVGVDYKGLPKDVKPGDILLLDDGKLQLKVVEVDGDEVETEVKNGGPLSNNKGIN 160 (465)
T ss_pred CCcEEecCCCEEEEEeccccCCCCCEEEechHHhHhhcCCCCEEEEeCCeEEEEEEEEeCCEEEEEEEeCcEecCCceee
Confidence 5 6999999999999873 3577889999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCC-CceEEEeecChhhHhhHHHHHHhcCE
Q 008112 264 VRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA-DIHVIVKIESADSIPNLHSIITASDG 342 (577)
Q Consensus 264 lp~~~~~lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~-~i~IiaKIEt~~gv~NldeIl~~sDG 342 (577)
+||+.+++|.|||+|.++|+|++++|+|||++|||++++|++++++++.+.|. ++.||+||||++|++|+|+|++++||
T Consensus 161 lp~~~~~lp~lte~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~Dg 240 (465)
T PRK05826 161 IPGGGLSLPALTEKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDG 240 (465)
T ss_pred ccCcccCCCCCChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCE
Confidence 99999999999999999999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred EEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCC
Q 008112 343 AMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 422 (577)
Q Consensus 343 ImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~ 422 (577)
|||||||||+++|.++++.+|++|+++|+++|||+|+||||||||+++|.|||||++||+|||+||+||+|||+|||+|+
T Consensus 241 ImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~ 320 (465)
T PRK05826 241 IMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGK 320 (465)
T ss_pred EEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccccCCCCCCCCCcccCCChhHHHHHHHHHHHhhcC-c-eEEEEcCChHHHHHHHhhCCCCeE
Q 008112 423 FPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLG-T-SIVVFTRTGFMAILLSHYRPSGTI 500 (577)
Q Consensus 423 yP~eaV~~m~~I~~~aE~~~~~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~-a-aIiV~T~sG~tA~~is~~RP~~PI 500 (577)
||++||++|++||+++|+.+++...+..+.. ...+..+++|.+|+++|++++ + +|||||+||+||+++|||||.|||
T Consensus 321 yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~-~~~~~~~~ia~aa~~~a~~l~~a~~Ivv~T~sG~ta~~isk~RP~~pI 399 (465)
T PRK05826 321 YPVEAVEAMARICKGAEKEFSINLSKHRLDR-QFDRIDEAIAMSAMYAANHLKGVKAIVALTESGRTARLISRFRPGAPI 399 (465)
T ss_pred CHHHHHHHHHHHHHHHHhccchhhhhhhccc-cccchHHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCCCCE
Confidence 9999999999999999987654211111111 113578999999999999999 9 999999999999999999999999
Q ss_pred EEEcCcHHHhhhhcccCCeeEEEeccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecC
Q 008112 501 FAFTNEKRIQQRLSLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVALLQSG 559 (577)
Q Consensus 501 IAvT~~~~taR~L~L~~GV~Pvl~~~~~d~d~~i~~al~~l~e~Gllk~GD~VVvv~G~ 559 (577)
||+|++++++|||+|+|||+|++++...+.++++..|++++++.|++++||.||+++|.
T Consensus 400 ~~~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~gd~vvvv~g~ 458 (465)
T PRK05826 400 FAVTRDEKTQRRLALYRGVYPVLFDSAADTDDAAEEALRLLLEKGLVESGDLVVVTSGD 458 (465)
T ss_pred EEEcCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC
Confidence 99999999999999999999999987788999999999999999999999999999985
No 12
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=1.4e-119 Score=972.83 Aligned_cols=440 Identities=35% Similarity=0.554 Sum_probs=411.2
Q ss_pred CcEEEEeccCCChHHHHHHHHHHHHHHHhcCCCeeEEEeecCCCeeEEeecCC-cEEEcCCCEEEEEEec---CCCCceE
Q 008112 134 MNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ-PITLTSGQEFTFTIQR---GVGSAEC 209 (577)
Q Consensus 134 m~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~-~i~L~~G~~v~lt~~~---~~~~~~~ 209 (577)
||+||||||||++|+|+++++++|+++++.+ ++++||+||||||||+|.+++ ++.|++|++++|+.++ ..++++.
T Consensus 1 ~~v~RlN~sHg~~e~h~~~i~~vr~~~~~~~-~~i~il~Dl~GPkiR~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~~~ 79 (454)
T PTZ00300 1 MSVARMNFSHGSHEYHQTTINNVRQAAAELG-VNIAIALDTKGPEIRTGLFVGGEAVMERGATCYVTTDPAFADKGTKDK 79 (454)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEecCCCceeccccCCCcEEecCCCEEEEEeccccccCCCCCE
Confidence 7999999999999999999999999999998 999999999999999999975 6999999999999873 3467789
Q ss_pred EeccccccccccCCCCEEEEeCCeEEEEEEEEeC-CeEEEEEeeCcEeccCceeeeCCCCCCCCCCCccCHHHHHHHHhc
Q 008112 210 VSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTE-DSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDN 288 (577)
Q Consensus 210 i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~-~~v~~~v~~gG~l~s~Kginlp~~~~~lp~ltekD~~dI~~al~~ 288 (577)
+++||++|++.+++||.||+|||+|.|+|+++++ +.++|+|++||.|++|||||+||+.+++|.+|++|.+||+|++++
T Consensus 80 i~v~~~~l~~~v~~G~~ilidDG~i~l~V~~~~~~~~v~~~v~~gG~l~~~kgvnlp~~~~~l~~ltekD~~dI~~ald~ 159 (454)
T PTZ00300 80 FYIDYQNLSKVVRPGGYIYIDDGILILHVQSHEDEQTLKCTVTNAHTISDRRGVNLPGCDVDLPAVSAKDCADLQFGVEQ 159 (454)
T ss_pred EEecCcccccccCCCCEEEEeCCeEEEEEEEEcCCceEEEEEecCcEecCCCccccCCCccCCCCCChhhHHHHHHHHHC
Confidence 9999999999999999999999999999999986 699999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHH
Q 008112 289 KVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIR 368 (577)
Q Consensus 289 gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~ 368 (577)
|+|||++|||++++|+++++++++..|.++.|||||||++|++|||+|++.+|||||||||||+|+|.++|+.+||+|++
T Consensus 160 gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~ 239 (454)
T PTZ00300 160 GVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILIS 239 (454)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcChHHHHHHHHHHHH
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccCCCCC
Q 008112 369 TCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMP 448 (577)
Q Consensus 369 ~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~~~~~ 448 (577)
+|+++|||+|+||||||||++||+|||||++||||||+||+||+|||+|||+|+||++||++|++||+++|+.+++..++
T Consensus 240 ~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~ 319 (454)
T PTZ00300 240 KCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSAVNEYVFF 319 (454)
T ss_pred HHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhhchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999864332222
Q ss_pred CCCCc--ccCCChhHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCCCCeEEEEcCcHHHhhhhcccCCeeEEEec
Q 008112 449 PNLGQ--AFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYME 525 (577)
Q Consensus 449 ~~l~~--~~~~~~~~~ia~~a~~~a~~~~a-aIiV~T~sG~tA~~is~~RP~~PIIAvT~~~~taR~L~L~~GV~Pvl~~ 525 (577)
..+.. ....+..+++|.+|+++|+++++ +||+||+||+||+++|||||.|||||+|++++++|+|+|+|||+|++++
T Consensus 320 ~~~~~~~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~tA~~vs~~RP~~pIia~t~~~~~ar~l~l~~GV~p~~~~ 399 (454)
T PTZ00300 320 NSIKKLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFD 399 (454)
T ss_pred hhhhccccCCCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEec
Confidence 21111 11124578999999999999999 9999999999999999999999999999999999999999999999886
Q ss_pred c-----CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCcceEEEEEC
Q 008112 526 F-----SDDAEETFDNALGLLQKQGMVKEGEEVALLQSGRQPIWRFQSTHNIQVRKV 577 (577)
Q Consensus 526 ~-----~~d~d~~i~~al~~l~e~Gllk~GD~VVvv~G~~~p~~~~G~tn~irv~~V 577 (577)
. ..+.++++..+++++++.|++++||.|++++|. | +..|+||++||+.|
T Consensus 400 ~~~~~~~~~~~~~~~~a~~~~~~~g~~~~gd~vvi~~g~--~-~~~g~tn~i~v~~~ 453 (454)
T PTZ00300 400 AERLGHDEGKEQRVAMGVGFAKSKGYVQSGDLMVVVHAD--H-KVKGYANQTRIILV 453 (454)
T ss_pred cccccccCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC--C-CCCCCCCEEEEEEe
Confidence 4 457889999999999999999999999999985 5 46799999999876
No 13
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=7.3e-119 Score=978.21 Aligned_cols=465 Identities=46% Similarity=0.736 Sum_probs=436.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHhcCCCeeEEEeecCCCeeEEeecCC-
Q 008112 108 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ- 186 (577)
Q Consensus 108 r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~- 186 (577)
|||||||||||+|+++|+|++|+++|||+||||||||++++|+++|+++|+++++++ ++++|++||+|||||+|.+++
T Consensus 1 ~~tkii~Tigp~~~~~e~l~~l~~~G~~~~R~N~shg~~~~~~~~i~~ir~~~~~~~-~~~~i~~Dl~GpkiR~g~~~~~ 79 (473)
T TIGR01064 1 RRTKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEHGKRIENVREAAEKLG-RPVAILLDTKGPEIRTGEIKGG 79 (473)
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCceeccccCCC
Confidence 689999999999999999999999999999999999999999999999999999998 999999999999999999975
Q ss_pred cEEEcCCCEEEEEEec--CCCCceEEeccccccccccCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeccCceeee
Q 008112 187 PITLTSGQEFTFTIQR--GVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLNV 264 (577)
Q Consensus 187 ~i~L~~G~~v~lt~~~--~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~v~~~v~~gG~l~s~Kginl 264 (577)
++.|++||.|+|+.+. ..++++.|++||++|++.+++||.||+|||+|.|+|++++++.++|+|++||.|+++||||+
T Consensus 80 ~~~l~~g~~v~l~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~iddG~i~l~V~~~~~~~~~~~v~~~g~l~~~kgvn~ 159 (473)
T TIGR01064 80 PVKLKKGDKVIITTDDIKGEGDEEDVSVDYKGLTKDVSEGDKILVDDGKISLVVVSVEGDKVICEVLNGGTLKSKKGVNL 159 (473)
T ss_pred ceecCCCCEEEEecccccCCCCCCEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCceeec
Confidence 7999999999999874 34677899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcC-CCceEEEeecChhhHhhHHHHHHhcCEE
Q 008112 265 RGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCG-ADIHVIVKIESADSIPNLHSIITASDGA 343 (577)
Q Consensus 265 p~~~~~lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~-~~i~IiaKIEt~~gv~NldeIl~~sDGI 343 (577)
||+.+++|.|||||.+||+|+++.|+|+|++|||++++||+.+++++.+.+ .++.|++||||++|++|+++|++++||+
T Consensus 160 p~~~~~~~~ltekD~~Dl~~~~~~~~d~I~lskV~sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dgi 239 (473)
T TIGR01064 160 PGADVDLPALSEKDKKDLKFGVEQGVDMVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEASDGI 239 (473)
T ss_pred CCCccCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhhCCcE
Confidence 999999999999999999999999999999999999999999999998877 5899999999999999999999999999
Q ss_pred EEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCC
Q 008112 344 MVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 423 (577)
Q Consensus 344 mIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~y 423 (577)
|+|||||++++|.++++.+|++|+.+|+++|||+|+||||||||+.+|.|||||++|++|++.+|+|++|||+||+.|+|
T Consensus 240 ~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~y 319 (473)
T TIGR01064 240 MVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKY 319 (473)
T ss_pred EEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCCCCCC--cccCCChhHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCCCCeE
Q 008112 424 PLKAVKVMHTVSLRTEATITGGAMPPNLG--QAFKNHMSEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRPSGTI 500 (577)
Q Consensus 424 P~eaV~~m~~I~~~aE~~~~~~~~~~~l~--~~~~~~~~~~ia~~a~~~a~~~~a-aIiV~T~sG~tA~~is~~RP~~PI 500 (577)
|+|||++|++|++++|+++.+...+.... .....+..+++|.+|+++|+.+++ +||+||+||+||+++|||||.+||
T Consensus 320 P~~~v~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA~~vSr~rp~~PI 399 (473)
T TIGR01064 320 PVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITEAIALSAVEAAEKLDAKAIVVLTESGRTARLLSKYRPNAPI 399 (473)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCEEEEEcCChHHHHHHHhhCCCCCE
Confidence 99999999999999998654322111111 111235789999999999999999 999999999999999999999999
Q ss_pred EEEcCcHHHhhhhcccCCeeEEEecc-CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCcceEEE
Q 008112 501 FAFTNEKRIQQRLSLYQGVCPIYMEF-SDDAEETFDNALGLLQKQGMVKEGEEVALLQSGRQPIWRFQSTHNIQV 574 (577)
Q Consensus 501 IAvT~~~~taR~L~L~~GV~Pvl~~~-~~d~d~~i~~al~~l~e~Gllk~GD~VVvv~G~~~p~~~~G~tn~irv 574 (577)
||+|++++++|+|+|+|||+|++++. ..+.++++..+++++++.|++++||.||+++|. .|....|.||.++|
T Consensus 400 iAvT~~~~v~R~L~L~wGV~Pil~~~~~~~~~~~i~~a~~~l~~~gl~~~GD~VVvv~g~-~~~~~~~~~n~i~v 473 (473)
T TIGR01064 400 IAVTPNERVARQLALYWGVFPFLVDEEPSDTEARVNKALELLKEKGILKKGDLVVVIQGG-APIGGVGGTNTIRV 473 (473)
T ss_pred EEEcCCHHHHHHhhccCCcEEEEeCCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecC-CCCCCCCCCeEEeC
Confidence 99999999999999999999999875 568899999999999999999999999999983 25456789999875
No 14
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.1e-118 Score=954.32 Aligned_cols=486 Identities=45% Similarity=0.691 Sum_probs=457.9
Q ss_pred ccccccccccccccccccccCCCCCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHH
Q 008112 82 GEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNA 161 (577)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~ 161 (577)
+|++|++.|... ...|..+|+|||+||+||++++.|+|++|+++|||++|+|||||++++|++.++|+|++.+
T Consensus 2 s~~~~~~~L~~~-------~~~~~~~~~t~ivctigP~s~s~e~l~~m~~aGmniarlNfShGs~~~h~~tidn~~~a~~ 74 (501)
T KOG2323|consen 2 SFLKHECLLSGS-------NGAPKKRRKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQETIDNLRDAIS 74 (501)
T ss_pred chhhhhhhhccc-------ccccccccceeeEeccCCccchHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHHHHHh
Confidence 578888888751 1267778999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeeEEEeecCCCeeEEeecCC--cEEEcCCCEEEEEEecCCC--CceEEeccccccccccCCCCEEEEeCCeEEEE
Q 008112 162 QSKDNVIAIMLDTKGPEVRSGDLPQ--PITLTSGQEFTFTIQRGVG--SAECVSVNYDDFVNDVEVGDMLLVDGGMMSLL 237 (577)
Q Consensus 162 ~~~~~~i~I~~Dl~GpkiR~g~~~~--~i~L~~G~~v~lt~~~~~~--~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~ 237 (577)
.++..+++|++|++||++|+|.+++ +++|++|+.++||++.... ..+.+++||+++..+|++||.||+|||.+.+.
T Consensus 75 ~~~~~~~ai~LDtkGpEirtg~~~~~~~i~L~~G~~i~~t~d~~~~~~~~~~~~vdyk~~~~~V~~G~~i~vddgi~s~~ 154 (501)
T KOG2323|consen 75 NTGALPCAIMLDTKGPEIRTGDLKNGKPIKLKEGQEITITTDYSYEAKLSETISVDYKKLAKDVKPGDIIYVDDGLISLI 154 (501)
T ss_pred hcCCcchhhhhccCCCeEeecccCCCCceeecCCCEEEEEcChhhccccceEEEeehHHhhhccccCCEEEECCceeeeE
Confidence 9987779999999999999999986 8999999999999985432 46899999999999999999999999999999
Q ss_pred EEEEeCCeEEEEEeeCcEeccCce-eeeCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCC
Q 008112 238 VKSKTEDSVKCEVVDGGELKSRRH-LNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA 316 (577)
Q Consensus 238 V~~v~~~~v~~~v~~gG~l~s~Kg-inlp~~~~~lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~ 316 (577)
|+++..+.+.|+|+|+|.++|+|+ +|+||+..+||.|||+|++||+|++++++|+|++||||.++|+.++|++|++.++
T Consensus 155 V~~~~~~~~~c~v~n~g~l~s~k~~vnlpg~~vdlp~ltekd~~dl~fGven~vd~i~~SfIR~a~dv~~iR~~Lg~~g~ 234 (501)
T KOG2323|consen 155 VKSVSKDEVTCRVENGGMLGSRKGNVNLPGTHVDLPALTEKDEKDLKFGVENKVDMIFASFIRKASDVREVRKVLGESGK 234 (501)
T ss_pred EEEeecCceEEEEecCcccccccCcccCCCccccCCccChhhHHHHhcCCCCCCCEEEeeeeeehHHHHHHHHHhCccCC
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999998899
Q ss_pred CceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChH
Q 008112 317 DIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRA 396 (577)
Q Consensus 317 ~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrA 396 (577)
+++||+|||+++|+.|+|+|+.++||+||+|||||+|+|+|+++.+||.||.+|+.+|||||+||||||||+.+|+||||
T Consensus 235 ~ikiisKIEn~~g~~nfDeIl~~sDg~MvarGdlGieip~e~vflaQK~~I~kcn~~gKPVI~atqmleSm~~kprPtRa 314 (501)
T KOG2323|consen 235 NIKLISKIENQEGVSNFDEILIESDGIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVICATQMLESMIVKPRPTRA 314 (501)
T ss_pred cceEEEEechhhhhccHHHHHHhcCceEEEeCCCCcccCHHHHHHHHHHHHHHhcccCCCEEEehhhHHhhccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCc--ccCCChhHHHHHHHHHHHhhc
Q 008112 397 EVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQ--AFKNHMSEMFAYHATMMSNTL 474 (577)
Q Consensus 397 Ev~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~l~~--~~~~~~~~~ia~~a~~~a~~~ 474 (577)
|++||+|||+||+||+|||||||.|+||++||++|+.||.++|+.+++..+++++.. .+..+..+++|.+|+.+|.+.
T Consensus 315 E~SDVanAVLdg~D~vmLsgEta~G~yP~~av~~m~~i~~~aE~~~~~~~~~~~l~~~v~~~~~~ie~~a~~Av~~a~~~ 394 (501)
T KOG2323|consen 315 EASDVANAVLDGADCVMLSGETAKGKYPVEAVKTMARICKEAEAVIYYDSLFSELGTAVSFPMSTIESLAASAVRAATKC 394 (501)
T ss_pred chHHHHHHHhccCceEEeccchhcCcCcHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998777766542 233457899999999999998
Q ss_pred Cc-eEEEEcCChHHHHHHHhhCCCCeEEEEcCcHHHhhhhcccCCeeEEEe------ccCCCHHHHHHHHHHHHHHcCCC
Q 008112 475 GT-SIVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYM------EFSDDAEETFDNALGLLQKQGMV 547 (577)
Q Consensus 475 ~a-aIiV~T~sG~tA~~is~~RP~~PIIAvT~~~~taR~L~L~~GV~Pvl~------~~~~d~d~~i~~al~~l~e~Gll 547 (577)
.+ +|+|+|++|++|+++|+|||.||||++|...++|||++|||||+|+++ .|+++.|..++++++++++.|++
T Consensus 395 ~a~aIvv~T~sg~~a~lvskyrP~~PIi~vt~~~~~aR~~~l~Rgv~Pvl~~~~~~~~~~~~~e~~i~~g~~~~k~~g~~ 474 (501)
T KOG2323|consen 395 LASAIVVLTKSGYTAILVSKYRPSVPIISVTRPVLAARQSHLYRGIIPVLYARSPVEDWSEDVESRIKFGLDFGKKKGIL 474 (501)
T ss_pred cceEEEEEecCcccHHHHhccCCCCCEEEEeccHHHHHHHHhhccceeeeecccchhhhhhhHHHHHHHHHHHHHhcchh
Confidence 88 999999999999999999999999999999999999999999999995 57889999999999999999999
Q ss_pred CCCCEEEEEecCCCCCCCCCCcceEEEEEC
Q 008112 548 KEGEEVALLQSGRQPIWRFQSTHNIQVRKV 577 (577)
Q Consensus 548 k~GD~VVvv~G~~~p~~~~G~tn~irv~~V 577 (577)
+.||.+|++++.. ...|.+|++++.++
T Consensus 475 k~gd~~vvv~~~~---~~~~~~~~i~v~~~ 501 (501)
T KOG2323|consen 475 KKGDVVVVVNKGK---GGASVTNTIRVEKV 501 (501)
T ss_pred hcCCEEEEEeccc---CCccceeeEEEeeC
Confidence 9999888887753 36889999999875
No 15
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=4.9e-105 Score=841.24 Aligned_cols=338 Identities=50% Similarity=0.809 Sum_probs=308.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHhcCCCeeEEEeecCCCeeEEeecCC
Q 008112 107 RRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ 186 (577)
Q Consensus 107 ~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~ 186 (577)
||||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|++.++++ ++++|++||+|||||||.+.+
T Consensus 1 mRkTKIi~TiGPas~~~e~l~~li~aGm~v~RiN~SHg~~e~~~~~i~~iR~a~~~~~-~~i~IllDl~GPkIRtg~l~~ 79 (348)
T PF00224_consen 1 MRKTKIIATIGPASESVEVLRKLIEAGMNVARINFSHGTHEEHKEIIENIREAEKELG-KPIAILLDLKGPKIRTGRLKD 79 (348)
T ss_dssp -SSSEEEEEESTTTCSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHHTT-TS-EEEEEE-TS-EBB-BBTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccEEEEEeeecCCHHHHHHHHHHHHHHHhccC-CceEEEeccCCCcceeeeecc
Confidence 7999999999999999999999999999999999999999999999999999999998 999999999999999999986
Q ss_pred ---cEEEcCCCEEEEEEecC---CCCceEEeccccccccccCCCCEEEEeCCeEEEEEEEEeCCe-EEEEEeeCcEeccC
Q 008112 187 ---PITLTSGQEFTFTIQRG---VGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDS-VKCEVVDGGELKSR 259 (577)
Q Consensus 187 ---~i~L~~G~~v~lt~~~~---~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~-v~~~v~~gG~l~s~ 259 (577)
+++|++||+|+|+.++. .++++.|++||++|++.|++||+||+|||+|.|+|++++++. ++|+|.+||.|+++
T Consensus 80 g~~~i~L~~G~~v~lt~d~~~~~~g~~~~I~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~~i~~~v~~~G~L~~~ 159 (348)
T PF00224_consen 80 GKKEIELKKGDTVTLTTDDSYEESGDSNRIPVNYPELFEDVKPGDKILIDDGKIELEVTEVDGDSSIKCEVLNGGKLKSR 159 (348)
T ss_dssp SSSSEEE-TTSEEEEESSCTGTTCBBSSEEEBSSTTHHHHS-TTEEEEETTTTEEEEEEEEESTEEEEEEESS-EEEESS
T ss_pred ccccccccCCCEEEEEeccccccccCcccccCCchhhhhhcCCCCEEEEcCCCcEEEEEEEcCCcceeEEeCCCCCccCC
Confidence 69999999999998854 356789999999999999999999999999999999999999 99999999999999
Q ss_pred ceeeeCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh
Q 008112 260 RHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA 339 (577)
Q Consensus 260 Kginlp~~~~~lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~ 339 (577)
||||+||+.+++|.||++|++||+|++++|+|||++|||++++||.++|+++.+.|.+++|||||||++|++||++|+++
T Consensus 160 KgVnlp~~~~~lp~LtekD~~di~fa~~~~vD~IalSFVrsa~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~~~ 239 (348)
T PF00224_consen 160 KGVNLPGVDLDLPALTEKDKEDIKFAVENGVDFIALSFVRSAEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEILEA 239 (348)
T ss_dssp EBEEETTS---S-SS-HHHHHHHHHHHHTT-SEEEETTE-SHHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHHHH
T ss_pred ccceecccccccccCCHHHHHHHHHHHHcCCCEEEecCCCchHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccC
Q 008112 340 SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETA 419 (577)
Q Consensus 340 sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa 419 (577)
||||||||||||+|+|+++||.+||+|++.|+++|||||+||||||||+++|.|||||++||||||.||+||+|||+|||
T Consensus 240 sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa 319 (348)
T PF00224_consen 240 SDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETA 319 (348)
T ss_dssp SSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHH
T ss_pred cCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhccccCC
Q 008112 420 HGKFPLKAVKVMHTVSLRTEATITGG 445 (577)
Q Consensus 420 ~G~yP~eaV~~m~~I~~~aE~~~~~~ 445 (577)
+|+||++||++|++|++++|+.+++.
T Consensus 320 ~G~~p~~~v~~~~~i~~~~E~~~~~~ 345 (348)
T PF00224_consen 320 IGKYPVEAVKTMARIIREAEKYLDYR 345 (348)
T ss_dssp TSSSHHHHHHHHHHHHHHHHHTS-HH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999987653
No 16
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=1.8e-103 Score=824.25 Aligned_cols=331 Identities=40% Similarity=0.689 Sum_probs=320.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHhcCCCeeEEEeecCCCeeEEeecCC-c
Q 008112 109 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ-P 187 (577)
Q Consensus 109 ~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~-~ 187 (577)
++||||||||+|+++|+|++|+++|||+||||||||++|+|.++++++|++++ +++||+||||||||+|.+++ +
T Consensus 2 ~~~~V~TiGPas~~~e~l~~Li~aGm~v~RlNfSHGs~e~h~~~i~~vR~~~~-----~vaIl~Dl~GPkIR~G~~~~~~ 76 (352)
T PRK06739 2 TIDRICTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKDIIRLVKSLDD-----SIKILGDVQGPKIRLGEIKGEQ 76 (352)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHhhh-----hcceeecCCCCcceecccCCCc
Confidence 68999999999999999999999999999999999999999999999999763 58999999999999999985 6
Q ss_pred EEEcCCCEEEEEEecCCCCceEEeccccccccccCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEeccCceeeeCCC
Q 008112 188 ITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLNVRGK 267 (577)
Q Consensus 188 i~L~~G~~v~lt~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~v~~~v~~gG~l~s~Kginlp~~ 267 (577)
+.|++|+.|+|+.+...++.+.+++||++|++.+++||.||+|||+|.|+|++++++.+.|+|++||.|+++||||+||+
T Consensus 77 i~l~~G~~v~lt~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~v~~~v~~gG~L~s~Kgvn~pg~ 156 (352)
T PRK06739 77 ITLQAGDSFILHTQPVTGSSTEASVDYEGIANDVKVGSRILMNDGEVELIVEKVSTDKIETKVKTGGNISSHKGVNLPGA 156 (352)
T ss_pred EEecCCCEEEEecCccCCCCCEEecchHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEEEEEEeeCcEEcCCCCeecccc
Confidence 99999999999987656777899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcC-CCceEEEeecChhhHhhHHHHHHhcCEEEEc
Q 008112 268 SATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCG-ADIHVIVKIESADSIPNLHSIITASDGAMVA 346 (577)
Q Consensus 268 ~~~lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~-~~i~IiaKIEt~~gv~NldeIl~~sDGImIa 346 (577)
.+++|.||+||++||+|++++|+|||++|||++++||.++|+++.+.| .+++|||||||++|++||++|++++||||||
T Consensus 157 ~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDgimVA 236 (352)
T PRK06739 157 IVRLPAITEKDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIA 236 (352)
T ss_pred cCCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999999875 4799999999999999999999999999999
Q ss_pred CCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHH
Q 008112 347 RGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLK 426 (577)
Q Consensus 347 RGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~e 426 (577)
|||||+|+|+++||.+||+|++.|+++|||||+||||||||+++|.|||||++||||||+||+||+|||+|||+|+||++
T Consensus 237 RGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~yPve 316 (352)
T PRK06739 237 RGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGEHPIE 316 (352)
T ss_pred CcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccC
Q 008112 427 AVKVMHTVSLRTEATITG 444 (577)
Q Consensus 427 aV~~m~~I~~~aE~~~~~ 444 (577)
||++|++|++++|+....
T Consensus 317 aV~~m~~I~~~aE~~~~~ 334 (352)
T PRK06739 317 SVSTLRLVSEFAEHVKKD 334 (352)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 999999999999976543
No 17
>PRK14725 pyruvate kinase; Provisional
Probab=100.00 E-value=1.8e-94 Score=790.00 Aligned_cols=354 Identities=29% Similarity=0.480 Sum_probs=334.8
Q ss_pred ccccccccccccccccccCCCCCCCCcEEEEecC-CCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHh
Q 008112 84 FQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIG-PSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQ 162 (577)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~r~tKIi~TiG-Ps~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~ 162 (577)
.+...+.+.+..|+..++++++.+|+|||||||| |+++++++|++|+++||||||||||||++++|+++|+++|+++++
T Consensus 115 ~~~~~g~~lL~~~~~~l~G~~~~~R~tkImvTlg~~Aa~d~e~i~~Li~aGmdvaRINcAHg~~e~w~~mi~~vR~a~~~ 194 (608)
T PRK14725 115 VTFEEGDELLDEHAEALLGPPPSGRPTRIMVTLPTEAADDPDLVRRLLAAGMDIARINCAHDDPEAWRAMIANVRTAEEE 194 (608)
T ss_pred hhhhhHHHHHHHHHHHhcCCCCCCCCceEEEeCCCcccCCHHHHHHHHHcCCCEeeeECCCCCHHHHHHHHHHHHHHHHH
Confidence 4555666677788889999999999999999999 699999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEEeecCCCeeEEeecCC--------------------------------------------------------
Q 008112 163 SKDNVIAIMLDTKGPEVRSGDLPQ-------------------------------------------------------- 186 (577)
Q Consensus 163 ~~~~~i~I~~Dl~GpkiR~g~~~~-------------------------------------------------------- 186 (577)
.| ++|+|++||+|||||||.+..
T Consensus 195 ~g-r~~~I~mDL~GPKiRtG~l~~g~~v~~~~p~rd~~G~v~~pa~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~l~~Gd 273 (608)
T PRK14725 195 LG-RRCRIAMDLAGPKLRTGPIAPGPRVIKLRPTRDALGRVLTPARLWLTASESPPPSPPPGPVGLPVDPEWLARLEPGD 273 (608)
T ss_pred cC-CCEEEEEeCCCCcceEEecCCCccccccccccccccccccchhheeecccCCCCCCCccccccccChhhhhhcCCCc
Confidence 98 999999999999999999863
Q ss_pred ----------------------------------------------------------cEEEcCCCEEEEEEecCCC---
Q 008112 187 ----------------------------------------------------------PITLTSGQEFTFTIQRGVG--- 205 (577)
Q Consensus 187 ----------------------------------------------------------~i~L~~G~~v~lt~~~~~~--- 205 (577)
++.|++||.++|+.+...+
T Consensus 274 ~i~~~DaRg~~R~l~V~~~~~~~~~~~~~~~~Y~~~G~~l~~~~~~~~~v~~~p~~~~~i~L~~Gd~l~lt~~~~~~~~~ 353 (608)
T PRK14725 274 ELRFTDARGKKRKLTVTEVDDEGVLAEGSQTAYLANGTLLRLGRHDSTRVGGLPPVEQKLRLKVGDRLVLTRDDAPGDPA 353 (608)
T ss_pred eeeeeeccccceeeeEEeecCceeEEeecceeeeccCceeeeccccccccccccccCcceEecCCCEEEEecCCcCCccc
Confidence 4799999999999874322
Q ss_pred --Cce--EEeccccccccccCCCCEEEEeCCeEEEEEEEEeCCeEEEEEee----CcEeccCceeeeCCCCCCCCCCCcc
Q 008112 206 --SAE--CVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVD----GGELKSRRHLNVRGKSATLPSITEK 277 (577)
Q Consensus 206 --~~~--~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~v~~~v~~----gG~l~s~Kginlp~~~~~lp~ltek 277 (577)
+.+ .|+|+|+++++.+++||.||+|||+|.++|++++++.+.|+|++ ||.|+++|||||||+.+++|.||+|
T Consensus 354 ~~~~~~~~i~~t~p~l~~~v~~G~~VlidDG~I~l~V~~~~~~~v~~~V~~a~~~gg~L~s~KGiNlP~~~l~lp~LTek 433 (608)
T PRK14725 354 QGDAPPARISCTLPEAFRAARVGERVWFDDGKIGAVVVKVEADEVELRITHARPGGSKLKAGKGINLPDSHLPLPALTDK 433 (608)
T ss_pred cCCCCccEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEEecCCCCEecCCCceecCCCCCCCCCCCHH
Confidence 345 89999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCC-CceEEEeecChhhHhhHHHHHHhc-----CEEEEcCCCcc
Q 008112 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA-DIHVIVKIESADSIPNLHSIITAS-----DGAMVARGDLG 351 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~-~i~IiaKIEt~~gv~NldeIl~~s-----DGImIaRGDLg 351 (577)
|++||+|++++ +|||++|||++++||.++++++.+.|. ++.||+||||++|++||++|+.++ |||||||||||
T Consensus 434 D~~dl~f~~~~-vD~ValSFVrs~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLg 512 (608)
T PRK14725 434 DLEDLAFVAKH-ADIVALSFVRSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLA 512 (608)
T ss_pred HHHHHHHHHHh-CCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCccc
Confidence 99999999999 999999999999999999999988764 799999999999999999999986 99999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHH
Q 008112 352 AELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 431 (577)
Q Consensus 352 ~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m 431 (577)
+|+|+++||.+||+||+.|+++|||||+||||||||+++|.|||||++|||||+ |+||+||| +|+||+|||++|
T Consensus 513 vEi~~e~lp~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv--gaD~VMLS----~G~yPveAV~~l 586 (608)
T PRK14725 513 VEVGFERLAEVQEEILWLCEAAHVPVIWATQVLESLAKKGLPSRAEITDAAMAL--RAECVMLN----KGPHIVEAVRVL 586 (608)
T ss_pred cccCHHHHHHHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCCchhHHHHHhhh--cCCEEeec----CCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 99999999 999999999999
Q ss_pred HHHHHHHhccccCC
Q 008112 432 HTVSLRTEATITGG 445 (577)
Q Consensus 432 ~~I~~~aE~~~~~~ 445 (577)
++|++++|.+...+
T Consensus 587 ~~I~~r~e~~~~Kk 600 (608)
T PRK14725 587 DDILRRMEEHQRKK 600 (608)
T ss_pred HHHHHHHHHhhhcc
Confidence 99999999886543
No 18
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=9e-93 Score=771.19 Aligned_cols=352 Identities=28% Similarity=0.468 Sum_probs=333.0
Q ss_pred cccccccccccccccccCCCCCCCCcEEEEec-CCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHhc
Q 008112 85 QHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTI-GPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQS 163 (577)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~r~tKIi~Ti-GPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~ 163 (577)
+.+.+.+.+..++..++++++.+|+||||||| ||+++++|+|++|+++||||||||||||++++|+++|+++|++++++
T Consensus 110 ~~~~g~~~l~~~~~~l~g~~~~~r~tkIv~Tlg~pa~~~~e~i~~Li~aGmdvaRiN~SHg~~e~~~~~i~~vR~a~~~~ 189 (493)
T PRK08187 110 QFFAGERLLAAHTEELFGPRPAARRTRIMVTLPSEAADDPDFVLRLAERGMDCARINCAHDDPAAWQAMIGHLRQAERAT 189 (493)
T ss_pred hhhhHHHHHHHHHHHHcCCCcCCCCceEEEECCCCccCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 44556666777888999999999999999999 59999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEeecCCCeeEEeecCC---cEEEcCCCEEEEEEecCC----CCceEEeccccccccccCCCCEEEEeCCeEEE
Q 008112 164 KDNVIAIMLDTKGPEVRSGDLPQ---PITLTSGQEFTFTIQRGV----GSAECVSVNYDDFVNDVEVGDMLLVDGGMMSL 236 (577)
Q Consensus 164 ~~~~i~I~~Dl~GpkiR~g~~~~---~i~L~~G~~v~lt~~~~~----~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l 236 (577)
+ ++|+|++||+|||||||.+.+ ++.|++||.|+|+.+... ++...|+|+|++|++.+++||.||+|||+|.+
T Consensus 190 g-~~i~Il~DL~GPKIRtG~l~~~~~~~~l~~Gd~i~l~~~~~~~~~~~~~~~i~~~~~~l~~~v~~Gd~IlidDG~I~l 268 (493)
T PRK08187 190 G-RRCKILMDLAGPKIRTGAVAGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVTCTLPEILARLAVGARVWIDDGKLGA 268 (493)
T ss_pred C-CCeEEEEeCCCCceeecccCCCCccEEecCCCEEEEeccccccCCCCCccEEEechHHHHHhcCCCCEEEEeCCeEEE
Confidence 9 999999999999999999974 489999999999987432 24578999999999999999999999999999
Q ss_pred EEEEEeCCeEEEEEe----eCcEeccCceeeeCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHH
Q 008112 237 LVKSKTEDSVKCEVV----DGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLK 312 (577)
Q Consensus 237 ~V~~v~~~~v~~~v~----~gG~l~s~Kginlp~~~~~lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~ 312 (577)
+|++++++.+.|+|+ +||+|+++|||||||+.+++|.+|++|.+||+|+++ ++|+|++|||++++||..+++++.
T Consensus 269 ~V~~v~~~~v~~~V~~~~~~gg~L~~~KgiNlP~~~vrin~LtekD~~DL~f~~~-~vD~I~lSfV~saeDV~~l~~~L~ 347 (493)
T PRK08187 269 RVERVGPGGALLEVTHARPKGLKLKPEKGLNFPDTALDLPALTEKDRADLDFVAR-HADLVGYSFVQSPGDVEALQAALA 347 (493)
T ss_pred EEEEEeCCEEEEEEEEecCCCeEecCCCcccccCceecCCCCCHhHHHHHHHHHh-cCCEEEECCCCCHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999998 699999999999999999999998
Q ss_pred hcC----CCceEEEeecChhhHhhHHHHHHhcC-----EEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehh
Q 008112 313 SCG----ADIHVIVKIESADSIPNLHSIITASD-----GAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNM 383 (577)
Q Consensus 313 ~~~----~~i~IiaKIEt~~gv~NldeIl~~sD-----GImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~ 383 (577)
+.+ .++.||+||||++|++|+++|+.++| ||||||||||+|+|++++|.+|++|+.+|+++|||+|+||||
T Consensus 348 ~~~~~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpvI~ATQm 427 (493)
T PRK08187 348 ARRPDDWRKLGLVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVIWATQV 427 (493)
T ss_pred HhCCCCCCCCeEEEEECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCeEEEchh
Confidence 765 47999999999999999999998888 999999999999999999999999999999999999999999
Q ss_pred hHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccC
Q 008112 384 LESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (577)
Q Consensus 384 LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~ 444 (577)
||||+++|.|||||++||||+ ||+||+||| +|+||++||++|++|+.++|++...
T Consensus 428 LESM~~~p~PTRAEvtDvAna--dgaDavMLs----~G~ypveaV~~l~~I~~~~e~~~~k 482 (493)
T PRK08187 428 LEGLVKKGLPSRAEMTDAAMA--ARAECVMLN----KGPYLVEAVTFLDDLLARMDGHQHK 482 (493)
T ss_pred hHhhccCCCCchHHHHHHHhh--cCCCEEeec----CCCCHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999998 999999999 9999999999999999999988543
No 19
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=99.95 E-value=8.4e-28 Score=216.56 Aligned_cols=115 Identities=36% Similarity=0.546 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCCCCeEEEEcCcHHHhhhhcccCCeeEEEeccCC-CHHHHHHHH
Q 008112 460 SEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYMEFSD-DAEETFDNA 537 (577)
Q Consensus 460 ~~~ia~~a~~~a~~~~a-aIiV~T~sG~tA~~is~~RP~~PIIAvT~~~~taR~L~L~~GV~Pvl~~~~~-d~d~~i~~a 537 (577)
+|++|.+++++|+++++ +|||+|+||+||+++|||||.|||||+|++++++|||+|+|||+|++++... +.+++++.+
T Consensus 1 Teaia~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~RP~~pIiavt~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a 80 (117)
T PF02887_consen 1 TEAIARAAVELAEDLNAKAIVVFTESGRTARLISKYRPKVPIIAVTPNESVARQLSLYWGVYPVLIEEFDKDTEELIAEA 80 (117)
T ss_dssp HHHHHHHHHHHHHHHTESEEEEE-SSSHHHHHHHHT-TSSEEEEEESSHHHHHHGGGSTTEEEEECSSHSHSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCeEEEEcCcHHHHhhhhcccceEEEEeccccccHHHHHHHH
Confidence 48999999999999999 9999999999999999999999999999999999999999999999998777 899999999
Q ss_pred HHHHHHcCCCCCCCEEEEEecCCCCCCCCCCcceEEEEE
Q 008112 538 LGLLQKQGMVKEGEEVALLQSGRQPIWRFQSTHNIQVRK 576 (577)
Q Consensus 538 l~~l~e~Gllk~GD~VVvv~G~~~p~~~~G~tn~irv~~ 576 (577)
+++++++|++++||.||+++|. |.+..|+||+++|++
T Consensus 81 ~~~~~~~g~~~~gd~vVv~~g~--~~~~~g~tn~~~v~~ 117 (117)
T PF02887_consen 81 LEYAKERGLLKPGDKVVVVAGM--PFGTPGGTNTIRVVR 117 (117)
T ss_dssp HHHHHHTTSS-TTSEEEEEEES--STTTTSSEEEEEEEE
T ss_pred HHHHHHcCCCCCCCEEEEEeCC--CCCCCCCCEEEEEEC
Confidence 9999999999999999999995 667899999999975
No 20
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.68 E-value=1.8e-16 Score=161.06 Aligned_cols=136 Identities=23% Similarity=0.260 Sum_probs=117.5
Q ss_pred CCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHH--------------------------HHHhcCCCceEEEee
Q 008112 271 LPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKN--------------------------YLKSCGADIHVIVKI 324 (577)
Q Consensus 271 lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~--------------------------~l~~~~~~i~IiaKI 324 (577)
+-.++..|...|++++|.|+++|++|+|+|++|++++.+ |++..|.++.++++|
T Consensus 66 ~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~I 145 (249)
T TIGR03239 66 VVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQI 145 (249)
T ss_pred EEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEE
Confidence 445567899999999999999999999999999999963 555667889999999
Q ss_pred cChhhHhhHHHHHHh--cCEEEEcCCCccCCCCCC------cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChH
Q 008112 325 ESADSIPNLHSIITA--SDGAMVARGDLGAELPIE------EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRA 396 (577)
Q Consensus 325 Et~~gv~NldeIl~~--sDGImIaRGDLg~elg~e------~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrA 396 (577)
||++|++|+++|+++ +|+++||++||+.+++.. ++..+..+++.+|+++|||+++.+ ++.
T Consensus 146 Et~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~~-----------~~~- 213 (249)
T TIGR03239 146 ESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGILA-----------PVE- 213 (249)
T ss_pred CCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEcC-----------CCH-
Confidence 999999999999988 999999999999999863 577788899999999999998632 222
Q ss_pred hHHHHHHHHHhccceEEeccccCC
Q 008112 397 EVSDIAIAVREGADAVMLSGETAH 420 (577)
Q Consensus 397 Ev~Dv~nav~~G~D~imLs~ETa~ 420 (577)
.++..++..|++.++++.|+..
T Consensus 214 --~~~~~~~~~G~~~~~~~~D~~~ 235 (249)
T TIGR03239 214 --ADARRYLEWGATFVAVGSDLGV 235 (249)
T ss_pred --HHHHHHHHcCCCEEEEhHHHHH
Confidence 3567889999999999988763
No 21
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.67 E-value=2.4e-16 Score=160.66 Aligned_cols=137 Identities=23% Similarity=0.294 Sum_probs=117.6
Q ss_pred CCCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHH--------------------------HHHhcCCCceEEEe
Q 008112 270 TLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKN--------------------------YLKSCGADIHVIVK 323 (577)
Q Consensus 270 ~lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~--------------------------~l~~~~~~i~IiaK 323 (577)
.+-.+++.|...|++++|.|+++|++|+|+|++|++++.+ |++..|.++.++++
T Consensus 72 ~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~ 151 (256)
T PRK10558 72 PVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQ 151 (256)
T ss_pred cEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEE
Confidence 3456677899999999999999999999999999999854 55666788999999
Q ss_pred ecChhhHhhHHHHHHh--cCEEEEcCCCccCCCCCC------cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCCh
Q 008112 324 IESADSIPNLHSIITA--SDGAMVARGDLGAELPIE------EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTR 395 (577)
Q Consensus 324 IEt~~gv~NldeIl~~--sDGImIaRGDLg~elg~e------~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~Ptr 395 (577)
|||++|++|+++|+++ +|++++|++||+.++|.. ++..+..+++.+|+++|||+++. .++.
T Consensus 152 IEt~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~-----------~~~~ 220 (256)
T PRK10558 152 IESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGIL-----------APVE 220 (256)
T ss_pred ECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEc-----------CCCH
Confidence 9999999999999987 999999999999999864 57888889999999999999863 1232
Q ss_pred HhHHHHHHHHHhccceEEeccccCC
Q 008112 396 AEVSDIAIAVREGADAVMLSGETAH 420 (577)
Q Consensus 396 AEv~Dv~nav~~G~D~imLs~ETa~ 420 (577)
.+...++..|++.++++.|+..
T Consensus 221 ---~~~~~~~~~G~~~v~~~~D~~~ 242 (256)
T PRK10558 221 ---ADARRYLEWGATFVAVGSDLGV 242 (256)
T ss_pred ---HHHHHHHHcCCCEEEEchHHHH
Confidence 3366788999999999988663
No 22
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.62 E-value=1.5e-15 Score=155.64 Aligned_cols=135 Identities=23% Similarity=0.252 Sum_probs=115.0
Q ss_pred CCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHH---------------------------HhcCCCceEEEe
Q 008112 271 LPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYL---------------------------KSCGADIHVIVK 323 (577)
Q Consensus 271 lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l---------------------------~~~~~~i~IiaK 323 (577)
+-.+...|...|+.++|.|+++|++|+|+|+++++++.+.. ...|.++.+|++
T Consensus 72 lVRvp~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~q 151 (267)
T PRK10128 72 VIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQ 151 (267)
T ss_pred EEECCCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEE
Confidence 34455678899999999999999999999999999997654 334567999999
Q ss_pred ecChhhHhhHHHHHHh--cCEEEEcCCCccCCCCCC------cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCCh
Q 008112 324 IESADSIPNLHSIITA--SDGAMVARGDLGAELPIE------EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTR 395 (577)
Q Consensus 324 IEt~~gv~NldeIl~~--sDGImIaRGDLg~elg~e------~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~Ptr 395 (577)
|||++|++|+++|+++ .|++++|++||+.++++. ++..+.++++++|+++|||+++.. ++.
T Consensus 152 iEt~~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~~-----------~~~ 220 (267)
T PRK10128 152 VESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLA-----------VDP 220 (267)
T ss_pred ECCHHHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEcC-----------CCH
Confidence 9999999999999998 999999999999999864 677788999999999999998632 222
Q ss_pred HhHHHHHHHHHhccceEEeccccC
Q 008112 396 AEVSDIAIAVREGADAVMLSGETA 419 (577)
Q Consensus 396 AEv~Dv~nav~~G~D~imLs~ETa 419 (577)
.++..++..|++.+.++.|+.
T Consensus 221 ---~~a~~~~~~G~~~v~~g~D~~ 241 (267)
T PRK10128 221 ---DMAQKCLAWGANFVAVGVDTM 241 (267)
T ss_pred ---HHHHHHHHcCCcEEEEChHHH
Confidence 346688899999999998875
No 23
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=4.9e-15 Score=146.70 Aligned_cols=136 Identities=26% Similarity=0.295 Sum_probs=118.0
Q ss_pred CCCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHH---------------------------HHHhcCCCceEEE
Q 008112 270 TLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKN---------------------------YLKSCGADIHVIV 322 (577)
Q Consensus 270 ~lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~---------------------------~l~~~~~~i~Iia 322 (577)
++-.++..|...|+..+|.|+..+.+|+|+|+|+.+++.+ |+..+|.++.+++
T Consensus 70 pvVR~p~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lv 149 (255)
T COG3836 70 PVVRPPVGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLV 149 (255)
T ss_pred CeeeCCCCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEE
Confidence 4456678899999999999999999999999999999964 5567889999999
Q ss_pred eecChhhHhhHHHHHHh--cCEEEEcCCCccCCCCCC------cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCC
Q 008112 323 KIESADSIPNLHSIITA--SDGAMVARGDLGAELPIE------EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPT 394 (577)
Q Consensus 323 KIEt~~gv~NldeIl~~--sDGImIaRGDLg~elg~e------~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~Pt 394 (577)
||||++|++|||+|+++ +||||||++||+.++|.. +|..+.+.++.+.+++||..++-+ +
T Consensus 150 qiEtr~gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagil~-----------~- 217 (255)
T COG3836 150 QIETRAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGILA-----------A- 217 (255)
T ss_pred EEccHHHHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCcccccc-----------C-
Confidence 99999999999999998 999999999999999976 566666788999999999987522 1
Q ss_pred hHhHHHHHHHHHhccceEEeccccC
Q 008112 395 RAEVSDIAIAVREGADAVMLSGETA 419 (577)
Q Consensus 395 rAEv~Dv~nav~~G~D~imLs~ETa 419 (577)
+=.++..++..|+..+.+..||.
T Consensus 218 --~p~~a~~yl~lGa~fvavG~D~~ 240 (255)
T COG3836 218 --DPADARRYLALGATFVAVGSDTG 240 (255)
T ss_pred --CHHHHHHHHHhCCeEEEEeccHH
Confidence 22457789999999999998875
No 24
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=99.56 E-value=1.2e-14 Score=147.62 Aligned_cols=134 Identities=21% Similarity=0.211 Sum_probs=112.1
Q ss_pred CCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHh---------------------------cCCCceEEEee
Q 008112 272 PSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKS---------------------------CGADIHVIVKI 324 (577)
Q Consensus 272 p~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~---------------------------~~~~i~IiaKI 324 (577)
..++..|..+|+.++|.|+|+|++|+|+|++|++++.++++. .|.++.++++|
T Consensus 67 VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~I 146 (249)
T TIGR02311 67 VRPAIGDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQV 146 (249)
T ss_pred EECCCCCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEe
Confidence 344556777999999999999999999999999999887742 12257899999
Q ss_pred cChhhHhhHHHHHHh--cCEEEEcCCCccCCCCCC------cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChH
Q 008112 325 ESADSIPNLHSIITA--SDGAMVARGDLGAELPIE------EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRA 396 (577)
Q Consensus 325 Et~~gv~NldeIl~~--sDGImIaRGDLg~elg~e------~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrA 396 (577)
||++|++|+++|+++ .|++|+|++||+.++|.. ++..+.+++..+|+.+||+.++.. ++.
T Consensus 147 Et~~av~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi~~-----------~~~- 214 (249)
T TIGR02311 147 ETREALDNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGILT-----------ADP- 214 (249)
T ss_pred cCHHHHHHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceeecC-----------CCH-
Confidence 999999999999987 899999999999999963 455677888999999999998632 122
Q ss_pred hHHHHHHHHHhccceEEeccccC
Q 008112 397 EVSDIAIAVREGADAVMLSGETA 419 (577)
Q Consensus 397 Ev~Dv~nav~~G~D~imLs~ETa 419 (577)
.+...++..|++.++++.|+.
T Consensus 215 --~~~~~~~~~G~~~~~~~~D~~ 235 (249)
T TIGR02311 215 --KLARQYLKLGALFVAVGVDTT 235 (249)
T ss_pred --HHHHHHHHcCCCEEEEchHHH
Confidence 346678899999999998865
No 25
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=99.42 E-value=1.7e-13 Score=136.28 Aligned_cols=102 Identities=25% Similarity=0.314 Sum_probs=86.4
Q ss_pred cCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhc-------CCCceEEEeecChhhHhhHHHHHHh--cCEEEEcC
Q 008112 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSC-------GADIHVIVKIESADSIPNLHSIITA--SDGAMVAR 347 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~-------~~~i~IiaKIEt~~gv~NldeIl~~--sDGImIaR 347 (577)
.-.+||+ +++.|+|+|++|+|++++|++++.+++... +.++.++++|||++||+|+++|++. .|++++|+
T Consensus 73 ~~~~Dl~-~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~ 151 (221)
T PF03328_consen 73 HIERDLE-ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGP 151 (221)
T ss_dssp HHHHHHH-HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-H
T ss_pred hhhhhhh-hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCc
Confidence 3355677 999999999999999999999999998654 3468899999999999999999965 78999999
Q ss_pred CCccCCCCCC------cHHHHHHHHHHHHHHcCCceEE
Q 008112 348 GDLGAELPIE------EVPLLQEEIIRTCRSMGKAVIV 379 (577)
Q Consensus 348 GDLg~elg~e------~v~~~qk~Ii~~c~~aGKPvi~ 379 (577)
+||+.+||.. ++..+.++++.+|+++||+++.
T Consensus 152 ~Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~i~ 189 (221)
T PF03328_consen 152 ADLSASLGIPGQPDHPEVLEARSKVVLAARAAGKPAID 189 (221)
T ss_dssp HHHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCeEE
Confidence 9999999876 5888999999999999997654
No 26
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=99.24 E-value=4e-11 Score=139.39 Aligned_cols=148 Identities=19% Similarity=0.176 Sum_probs=116.5
Q ss_pred CCccCHHHHHHHH-hcCCCE--EEEcCCCCHHHHHHHHHHHHhcC-----CCceEEEeecChhhHhhHHHHHHhcCEEEE
Q 008112 274 ITEKDWDDIKFGV-DNKVDF--YAVSFVKDAQVVHELKNYLKSCG-----ADIHVIVKIESADSIPNLHSIITASDGAMV 345 (577)
Q Consensus 274 ltekD~~dI~~al-~~gvD~--I~~SfV~sa~dv~~lr~~l~~~~-----~~i~IiaKIEt~~gv~NldeIl~~sDGImI 345 (577)
+-....+.|..++ +.|+.. |++|||+++++++++++.+...+ .++.++++||++.|+.|+|+|++++|+++|
T Consensus 611 lf~~qlraI~ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfisI 690 (782)
T TIGR01418 611 AFRLECRAIKRVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDGFSI 690 (782)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCEEEE
Confidence 3344556677888 889988 99999999999999999886543 348999999999999999999999999999
Q ss_pred cCCCccC-CCCC---------------CcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhcc
Q 008112 346 ARGDLGA-ELPI---------------EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGA 409 (577)
Q Consensus 346 aRGDLg~-elg~---------------e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~ 409 (577)
|+.||+. .++. +.|..+.++++++|+++|||+.++.++... .-..+.-.+..|+
T Consensus 691 GtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~~----------~p~~~~~l~~~G~ 760 (782)
T TIGR01418 691 GSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPSD----------YPEVVEFLVEEGI 760 (782)
T ss_pred CchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCCC----------CHHHHHHHHHcCC
Confidence 9999986 4443 257788899999999999999987653310 1123557888999
Q ss_pred ceEEeccccCCCCCHHHHHHHHHHHHHHHhc
Q 008112 410 DAVMLSGETAHGKFPLKAVKVMHTVSLRTEA 440 (577)
Q Consensus 410 D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~ 440 (577)
+.+.++.+ .+-.++..+.++|+
T Consensus 761 ~~ls~~~d---------~~~~~k~~i~~~e~ 782 (782)
T TIGR01418 761 DSISLNPD---------AVLRTRLQVAEVEK 782 (782)
T ss_pred CEEEECcc---------hHHHHHHHHHHhcC
Confidence 99999855 34445556666663
No 27
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=99.22 E-value=6e-11 Score=137.99 Aligned_cols=150 Identities=20% Similarity=0.219 Sum_probs=118.6
Q ss_pred CCccCHHHHHHHHh-cCCCE--EEEcCCCCHHHHHHHHHHHHhcC-----CCceEEEeecChhhHhhHHHHHHhcCEEEE
Q 008112 274 ITEKDWDDIKFGVD-NKVDF--YAVSFVKDAQVVHELKNYLKSCG-----ADIHVIVKIESADSIPNLHSIITASDGAMV 345 (577)
Q Consensus 274 ltekD~~dI~~al~-~gvD~--I~~SfV~sa~dv~~lr~~l~~~~-----~~i~IiaKIEt~~gv~NldeIl~~sDGImI 345 (577)
+-+...+.|+.+++ .|++. |++|||+++++++++++.++..| .++.++++||++.|+.|+|+|++++|+++|
T Consensus 618 lf~~qlraI~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi~I 697 (795)
T PRK06464 618 AFALECEAIKRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGFSI 697 (795)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEEEE
Confidence 34456677888999 79988 99999999999999999886542 368999999999999999999999999999
Q ss_pred cCCCccC-CCCC---------------CcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhcc
Q 008112 346 ARGDLGA-ELPI---------------EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGA 409 (577)
Q Consensus 346 aRGDLg~-elg~---------------e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~ 409 (577)
|+.||+. .++. +.|..+.++++++|+++|||++++.++... .| ..+...+..|+
T Consensus 698 GtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~~-----~p-----~~~~~l~~~G~ 767 (795)
T PRK06464 698 GSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPSD-----HP-----DFAEWLVEEGI 767 (795)
T ss_pred CchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCCC-----cH-----HHHHHHHHCCC
Confidence 9999986 3442 257778899999999999999987654410 02 22446788999
Q ss_pred ceEEeccccCCCCCHHHHHHHHHHHHHHHhccc
Q 008112 410 DAVMLSGETAHGKFPLKAVKVMHTVSLRTEATI 442 (577)
Q Consensus 410 D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~ 442 (577)
+.+.++.+ ++-.++..+.++|+.+
T Consensus 768 ~~ls~~~d---------~~~~~k~~i~~~~~~~ 791 (795)
T PRK06464 768 DSISLNPD---------AVVDTWLAVAEVEKKI 791 (795)
T ss_pred CEEEEcch---------hHHHHHHHHHHhHHHh
Confidence 99999744 4445566666777543
No 28
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=99.19 E-value=6.1e-11 Score=123.05 Aligned_cols=134 Identities=21% Similarity=0.225 Sum_probs=105.5
Q ss_pred CccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhc-------CCCceEEEeecChhhHhhHHHHHHh---cCEEE
Q 008112 275 TEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSC-------GADIHVIVKIESADSIPNLHSIITA---SDGAM 344 (577)
Q Consensus 275 tekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~-------~~~i~IiaKIEt~~gv~NldeIl~~---sDGIm 344 (577)
|+....||+..++.|+++|++|+|++++|++.+.+++... +.++.+++.|||++|+.|+++|+.. .|+++
T Consensus 71 ~~~~~~di~~~l~~g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~ 150 (288)
T TIGR01588 71 TPFGLADIKAVVKAGVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGIA 150 (288)
T ss_pred ChhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEE
Confidence 4456789999999999999999999999999999887542 2358899999999999999999954 67999
Q ss_pred EcCCCccCCCCCC------cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEe
Q 008112 345 VARGDLGAELPIE------EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (577)
Q Consensus 345 IaRGDLg~elg~e------~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imL 414 (577)
+|+.||+.++|.. ++..++.+++.+|+++|+++|.. ...+ .++ ...-..+...+-..|+++=+.
T Consensus 151 ~G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~id~-v~~~--~~d---~~~l~~~~~~~~~~Gf~Gk~~ 220 (288)
T TIGR01588 151 LGAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAAFDT-VYSD--VNN---EEGFLAEAQLIKQLGFDGKSL 220 (288)
T ss_pred eCHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCcccC-CccC--cCC---HHHHHHHHHHHHHcCCCceec
Confidence 9999999999864 48888899999999999998642 1111 000 011224456678889887664
No 29
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=99.09 E-value=4.4e-10 Score=126.53 Aligned_cols=134 Identities=16% Similarity=0.120 Sum_probs=109.8
Q ss_pred CCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHh-----------cCCCceEEEeecChhhHhhHHHHHHh
Q 008112 271 LPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKS-----------CGADIHVIVKIESADSIPNLHSIITA 339 (577)
Q Consensus 271 lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~-----------~~~~i~IiaKIEt~~gv~NldeIl~~ 339 (577)
-|.+-....+.|..+++.|...|++|||+++++++++++.+.. .+.++.+.++|||+.|+.|+|+|++.
T Consensus 365 ~~~lf~~QlrAI~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~ 444 (565)
T TIGR01417 365 REEILRTQLRAILRASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKE 444 (565)
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhh
Confidence 3444455566778899999999999999999999999988753 34578999999999999999999999
Q ss_pred cCEEEEcCCCccC-----C-----CCC------CcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHH
Q 008112 340 SDGAMVARGDLGA-----E-----LPI------EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI 403 (577)
Q Consensus 340 sDGImIaRGDLg~-----e-----lg~------e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~n 403 (577)
+|+++||+.||+. + ++. +.|..+.++++++|+++|||+.++..+-- .| ..+..
T Consensus 445 vDf~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a~------~p-----~~~~~ 513 (565)
T TIGR01417 445 VDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMAG------DE-----RAIPL 513 (565)
T ss_pred CCEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcCC------CH-----HHHHH
Confidence 9999999999987 3 442 25778889999999999999998655431 11 34667
Q ss_pred HHHhccceEEec
Q 008112 404 AVREGADAVMLS 415 (577)
Q Consensus 404 av~~G~D~imLs 415 (577)
.+..|++.+.++
T Consensus 514 l~~~G~~~lsv~ 525 (565)
T TIGR01417 514 LLGLGLRELSMS 525 (565)
T ss_pred HHHCCCCEEEEC
Confidence 889999998876
No 30
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=98.96 E-value=3.5e-09 Score=119.36 Aligned_cols=134 Identities=15% Similarity=0.091 Sum_probs=109.8
Q ss_pred CCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHh-----------cCCCceEEEeecChhhHhhHHHHHHh
Q 008112 271 LPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKS-----------CGADIHVIVKIESADSIPNLHSIITA 339 (577)
Q Consensus 271 lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~-----------~~~~i~IiaKIEt~~gv~NldeIl~~ 339 (577)
-|.+-....+.|..+.+.|...|++|||.++++++++++.+.. .+.++.+.++||++.|+.|+|+|++.
T Consensus 366 ~~~~f~~QlrAilra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~~~ 445 (575)
T PRK11177 366 RKEILHDQLRAILRASAFGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAKE 445 (575)
T ss_pred CHHHHHHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHHhh
Confidence 3444455566778889999999999999999999999987753 24678999999999999999999999
Q ss_pred cCEEEEcCCCccCCC-----C-----------CCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHH
Q 008112 340 SDGAMVARGDLGAEL-----P-----------IEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI 403 (577)
Q Consensus 340 sDGImIaRGDLg~el-----g-----------~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~n 403 (577)
+|+++||+.||+.-+ + .+.|..+.++++++|+++|||+.++.+|-. -|.. +.-
T Consensus 446 vDf~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~vCGe~A~------dp~~-----~~l 514 (575)
T PRK11177 446 VDFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGELAG------DERA-----TLL 514 (575)
T ss_pred CCEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCC------CHHH-----HHH
Confidence 999999999998822 2 115777889999999999999999988652 2322 446
Q ss_pred HHHhccceEEec
Q 008112 404 AVREGADAVMLS 415 (577)
Q Consensus 404 av~~G~D~imLs 415 (577)
.+..|.|-+-++
T Consensus 515 LlglGi~~lSm~ 526 (575)
T PRK11177 515 LLGMGLDEFSMS 526 (575)
T ss_pred HHHCCCCeEEEC
Confidence 788999998886
No 31
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=98.54 E-value=9.5e-08 Score=98.77 Aligned_cols=161 Identities=25% Similarity=0.190 Sum_probs=120.7
Q ss_pred CccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCce---EEEeecChhhHhhHHHHHHhc---CEEEEcCC
Q 008112 275 TEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIH---VIVKIESADSIPNLHSIITAS---DGAMVARG 348 (577)
Q Consensus 275 tekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~---IiaKIEt~~gv~NldeIl~~s---DGImIaRG 348 (577)
|++-.+||.-.+..++|+|.+|+|+++.|+.++...+.+...... +++.|||++|+.|..+|...+ .|+.+|-.
T Consensus 66 t~~g~~Dl~av~~~~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a~~~l~~l~~Ga~ 145 (283)
T COG2301 66 TPWGADDLAAVVRSAVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAASGRLVGLAFGAN 145 (283)
T ss_pred ChhhHHHHHHHHhcCCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcCccceeeeEecHH
Confidence 667889999999999999999999999999999998876554444 999999999999999999985 79999999
Q ss_pred CccCCCCCC-------cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccc----
Q 008112 349 DLGAELPIE-------EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGE---- 417 (577)
Q Consensus 349 DLg~elg~e-------~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~E---- 417 (577)
||..+++.. .+..+..+|+.+|+.+|++.+.. .-+=++++.--+ .+..++...|+|+-++=.=
T Consensus 146 Dl~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a~D~---V~~d~~d~~g~~---~e~~~a~~~Gf~GK~~IHP~QI~ 219 (283)
T COG2301 146 DLAADLGARRSPDGTDPLRYARAMIVLAARAAGLAAIDG---VYTDINDPEGFA---REAAQAAALGFDGKTCIHPSQIE 219 (283)
T ss_pred HHHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCcccc---cccccCCHHHHH---HHHHHHHHcCCCcccccChhHHH
Confidence 998888754 46678899999999999998652 111122222222 4577888999988776200
Q ss_pred --cCCCCCHHHHHHHHHHHHHHHhcc
Q 008112 418 --TAHGKFPLKAVKVMHTVSLRTEAT 441 (577)
Q Consensus 418 --Ta~G~yP~eaV~~m~~I~~~aE~~ 441 (577)
-.....+-+-|.+-++|...++..
T Consensus 220 ~vn~af~Ps~~ev~~Ar~Il~a~~~a 245 (283)
T COG2301 220 VVNRAFSPSEEEVAWARRVLEAAAAA 245 (283)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhhhh
Confidence 012233445566667777666653
No 32
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.42 E-value=5.1e-06 Score=92.18 Aligned_cols=140 Identities=17% Similarity=0.183 Sum_probs=99.7
Q ss_pred HHHHHHHhc--CCCEEEEcCCCCHHHHHHHHHHHHhc----C---CCceEEEeecChhhHhhHHHHHHh----cCEEEEc
Q 008112 280 DDIKFGVDN--KVDFYAVSFVKDAQVVHELKNYLKSC----G---ADIHVIVKIESADSIPNLHSIITA----SDGAMVA 346 (577)
Q Consensus 280 ~dI~~al~~--gvD~I~~SfV~sa~dv~~lr~~l~~~----~---~~i~IiaKIEt~~gv~NldeIl~~----sDGImIa 346 (577)
.|++..++. |+ +|.+|++++++|++.+.+.+... | ..+++++.|||+.|+-|++||+.. +.|+..|
T Consensus 174 hd~~~l~~~g~gp-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~alr~Rl~gLn~G 252 (511)
T cd00727 174 HNAKALLARGSGP-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCG 252 (511)
T ss_pred hhHHHHHhcCCCc-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcC
Confidence 444444454 47 99999999999999999888532 2 358899999999999999999976 4599999
Q ss_pred CCCccCCCC----C-------C--------cHHH-HHHHHHHHHHHcCCceEEEehhhHhhhcCCCCCh-Hh--------
Q 008112 347 RGDLGAELP----I-------E--------EVPL-LQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTR-AE-------- 397 (577)
Q Consensus 347 RGDLg~elg----~-------e--------~v~~-~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~Ptr-AE-------- 397 (577)
|.|+..+++ . + .+.. .++.++.+|+++|+..|.. |.. -.|.+ .+
T Consensus 253 ~~Dy~~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~AIdG------m~a-~ip~kdd~~~n~~~l~ 325 (511)
T cd00727 253 RWDYIFSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAHAMGG------MAA-QIPIKDDPAANEAALA 325 (511)
T ss_pred hHHHHHHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCCcccc------hhh-cCCcccchhhHHHHHH
Confidence 999988872 1 1 2333 3667999999999998752 211 12322 11
Q ss_pred --HHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHH
Q 008112 398 --VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVS 435 (577)
Q Consensus 398 --v~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~ 435 (577)
..|......+|+||-++ -||-++ ...+++-
T Consensus 326 ~~r~dk~~~~~lGfDGkwv-------iHP~qV-~ianevF 357 (511)
T cd00727 326 KVRADKLREATAGHDGTWV-------AHPGLV-PVAMEVF 357 (511)
T ss_pred HHHHHHHHHHhCCCCcccc-------cCHHHH-HHHHHHH
Confidence 35666788999999887 477443 3344443
No 33
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.38 E-value=1.3e-05 Score=89.54 Aligned_cols=138 Identities=13% Similarity=0.139 Sum_probs=95.9
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHhcC-------CCceEEEeecChhhHhhHHHHHHh----cCEEEEcCCCccCCCCCC--
Q 008112 291 DFYAVSFVKDAQVVHELKNYLKSCG-------ADIHVIVKIESADSIPNLHSIITA----SDGAMVARGDLGAELPIE-- 357 (577)
Q Consensus 291 D~I~~SfV~sa~dv~~lr~~l~~~~-------~~i~IiaKIEt~~gv~NldeIl~~----sDGImIaRGDLg~elg~e-- 357 (577)
-+|.+|++++++|+..+.+.+.... ..+++++.|||+.|+-|+++|+.. +.|+..|+.|+..+++..
T Consensus 186 pyi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sli~~~~ 265 (511)
T cd00480 186 PYFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIKTFR 265 (511)
T ss_pred cEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHhccccc
Confidence 3789999999999999998875432 358899999999999999999976 449999999999988421
Q ss_pred -----------------c-HHHHHHHHHHHHHHcCCceEE--Eehhh-HhhhcCCCCC-hHhHHHHHHHHHhccceEEec
Q 008112 358 -----------------E-VPLLQEEIIRTCRSMGKAVIV--ATNML-ESMIVHPTPT-RAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 358 -----------------~-v~~~qk~Ii~~c~~aGKPvi~--ATq~L-eSM~~~~~Pt-rAEv~Dv~nav~~G~D~imLs 415 (577)
. +..+++.++.+|+++|.+.|. ++++- ..|-..+... ..=..|...+...|+|+-+.-
T Consensus 266 ~~~~~~~pd~~~~~m~~~~l~ay~~~lv~aa~a~G~~AIdg~~a~i~~k~d~~~~~~d~~gl~~dk~~~~~~GfdGkwvi 345 (511)
T cd00480 266 NHPDFVLPDRAKVTMTSPFMRAYEKLLVKTCHRRGAHAMGGMAAQIPIKGDPAANEAAMAKVRADKLREAKAGHDGTWVA 345 (511)
T ss_pred cCccccCCcccccccccHHHHHHHHHHHHHHHHcCCCccccchhhccccCCcccchhHHHHHHHHHHHHHhCCCCccccc
Confidence 2 555677899999999998753 22211 0000000001 111255667889999997773
Q ss_pred cccCCCCCHHHHHHHHHHHHH
Q 008112 416 GETAHGKFPLKAVKVMHTVSL 436 (577)
Q Consensus 416 ~ETa~G~yP~eaV~~m~~I~~ 436 (577)
||- -|...+.+-.
T Consensus 346 -------HP~-qV~~~n~vF~ 358 (511)
T cd00480 346 -------HPG-LAPLAALVFH 358 (511)
T ss_pred -------CHH-HHHHHHHHHh
Confidence 674 3444444443
No 34
>PRK09255 malate synthase; Validated
Probab=98.28 E-value=1.6e-05 Score=88.55 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=95.3
Q ss_pred hcCCCEEEEcCCCCHHHHHHHHHHHHhc----C---CCceEEEeecChhhHhhHHHHHHh----cCEEEEcCCCccCC--
Q 008112 287 DNKVDFYAVSFVKDAQVVHELKNYLKSC----G---ADIHVIVKIESADSIPNLHSIITA----SDGAMVARGDLGAE-- 353 (577)
Q Consensus 287 ~~gvD~I~~SfV~sa~dv~~lr~~l~~~----~---~~i~IiaKIEt~~gv~NldeIl~~----sDGImIaRGDLg~e-- 353 (577)
..|+ +|.+|++++++|++.+.+.+... | ..+++++.|||+.|+-|++||+.. +.|+..||.|+..+
T Consensus 204 g~gp-~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~a~r~Rl~gLn~G~~Dy~~S~i 282 (531)
T PRK09255 204 GSGP-YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPAAFEMDEILYELREHIAGLNCGRWDYIFSYI 282 (531)
T ss_pred CCCc-EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcChHHhhhhHH
Confidence 3566 99999999999999999888532 2 358899999999999999999976 45999999999865
Q ss_pred --CCC----------------CcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCCh-----------HhHHHHHHH
Q 008112 354 --LPI----------------EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTR-----------AEVSDIAIA 404 (577)
Q Consensus 354 --lg~----------------e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~Ptr-----------AEv~Dv~na 404 (577)
++. +-+...++.++.+|+++|+..|.. |. ...|.+ .=..|....
T Consensus 283 k~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~AIdG--m~-----a~ip~k~D~~~n~~a~~g~r~dk~r~ 355 (531)
T PRK09255 283 KTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAHAMGG--MA-----AFIPIKNDPEANEAALAKVRADKERE 355 (531)
T ss_pred HHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCCccCc--hh-----hcCCcccChhhhHHHHHHHHHHHHHH
Confidence 221 123334777889999999998752 21 112322 112456678
Q ss_pred HHhccceEEeccccCCCCCHHHHHHHHHHH
Q 008112 405 VREGADAVMLSGETAHGKFPLKAVKVMHTV 434 (577)
Q Consensus 405 v~~G~D~imLs~ETa~G~yP~eaV~~m~~I 434 (577)
..+|+||-++ -||-+ |...+.+
T Consensus 356 ~~lGfDGkwv-------iHP~q-V~ianev 377 (531)
T PRK09255 356 ANDGHDGTWV-------AHPGL-VPTAMEV 377 (531)
T ss_pred HhCCCCccee-------cCHHH-HHHHHHH
Confidence 8999999887 47844 3443333
No 35
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=98.27 E-value=9.2e-06 Score=90.08 Aligned_cols=127 Identities=16% Similarity=0.190 Sum_probs=91.3
Q ss_pred HHHHHHhcC-CCEEEEcCCCCHHHHHHHHHHHHhc----C---CCceEEEeecChhhHhhHHHHHHh----cCEEEEcCC
Q 008112 281 DIKFGVDNK-VDFYAVSFVKDAQVVHELKNYLKSC----G---ADIHVIVKIESADSIPNLHSIITA----SDGAMVARG 348 (577)
Q Consensus 281 dI~~al~~g-vD~I~~SfV~sa~dv~~lr~~l~~~----~---~~i~IiaKIEt~~gv~NldeIl~~----sDGImIaRG 348 (577)
|++..++.| --+|.+|+|++++|++.+.+.+... | ..+++.+.|||+.|+-|++||+.. +.|+..||.
T Consensus 176 d~~~l~~~g~Gp~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~~A~~nm~EIa~alr~Rl~gLn~G~~ 255 (511)
T TIGR01344 176 NARALLKKGKGPYFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKATVLIETLPAAFEMDEILYELREHISGLNCGRW 255 (511)
T ss_pred hHHHHHhCCCCCEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCHHHHHhHHHHHHhccCceeEEEcChH
Confidence 333334543 2499999999999999998887532 2 348899999999999999999975 559999999
Q ss_pred CccCCCC----C----------------CcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCCh--------Hh---
Q 008112 349 DLGAELP----I----------------EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTR--------AE--- 397 (577)
Q Consensus 349 DLg~elg----~----------------e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~Ptr--------AE--- 397 (577)
|+..++. . +-+...++.++.+|+++|+.+|.- | .. -.|.+ |-
T Consensus 256 Dy~~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~AIdG--m----~a-~ip~k~D~~~n~~al~~v 328 (511)
T TIGR01344 256 DYIFSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAHAMGG--M----AA-FIPIKGDPAANEAAMNKV 328 (511)
T ss_pred HhhhhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCCccCc--h----hc-cCCcccChhhHHHHHHHH
Confidence 9984333 1 123344778889999999998851 1 11 01222 11
Q ss_pred HHHHHHHHHhccceEEe
Q 008112 398 VSDIAIAVREGADAVML 414 (577)
Q Consensus 398 v~Dv~nav~~G~D~imL 414 (577)
..|......+|+||-++
T Consensus 329 r~dk~re~~lGfDGkwv 345 (511)
T TIGR01344 329 RADKIREAKNGHDGTWV 345 (511)
T ss_pred HHHHHHHHhCCCCcccc
Confidence 35566788999999887
No 36
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=98.23 E-value=1.3e-05 Score=83.65 Aligned_cols=133 Identities=20% Similarity=0.203 Sum_probs=98.5
Q ss_pred CCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhc-----------CCCceEEEeecChhhHhhHHHHHHhc
Q 008112 272 PSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSC-----------GADIHVIVKIESADSIPNLHSIITAS 340 (577)
Q Consensus 272 p~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~-----------~~~i~IiaKIEt~~gv~NldeIl~~s 340 (577)
|.+-....+.|..+...|==.|++|||++.+++.++++++.+. +.++++-++||++.++--+|++++.+
T Consensus 119 p~~f~~QlrAilra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPsaal~~~~~~~~~ 198 (293)
T PF02896_consen 119 PELFRTQLRAILRAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPSAALMADEFAKEV 198 (293)
T ss_dssp HHHHHHHHHHHHHHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHHHHHTHHHHHTTS
T ss_pred hhhHHHHHHHHHHHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhHHHHHHHHHHHHC
Confidence 4444455666677777775569999999999999999988654 35689999999999999999999999
Q ss_pred CEEEEcCCCc-----cCCCCC-----------CcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHH
Q 008112 341 DGAMVARGDL-----GAELPI-----------EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIA 404 (577)
Q Consensus 341 DGImIaRGDL-----g~elg~-----------e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~na 404 (577)
|.+-||--|| +++=.- .-+..+.++++++|+++||||.++.+|-. +-.-+--.
T Consensus 199 DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vsvCGe~a~-----------~p~~~~~L 267 (293)
T PF02896_consen 199 DFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVSVCGEMAS-----------DPEAIPLL 267 (293)
T ss_dssp SEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEEEESGGGG-----------SHHHHHHH
T ss_pred CEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEEEecCCCC-----------CHHHHHHH
Confidence 9999997776 222111 14677778999999999999999999762 22335578
Q ss_pred HHhccceEEec
Q 008112 405 VREGADAVMLS 415 (577)
Q Consensus 405 v~~G~D~imLs 415 (577)
+..|+|.+..+
T Consensus 268 l~lGi~~lSv~ 278 (293)
T PF02896_consen 268 LGLGIRSLSVS 278 (293)
T ss_dssp HHHT-SEEEE-
T ss_pred HHcCCCEEEEC
Confidence 89999999987
No 37
>PLN02626 malate synthase
Probab=97.92 E-value=0.00022 Score=79.47 Aligned_cols=123 Identities=19% Similarity=0.318 Sum_probs=88.6
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHhc----C---CCceEEEeecChhhHhhHHHHHHh----cCEEEEcCCCc----cCCCC
Q 008112 291 DFYAVSFVKDAQVVHELKNYLKSC----G---ADIHVIVKIESADSIPNLHSIITA----SDGAMVARGDL----GAELP 355 (577)
Q Consensus 291 D~I~~SfV~sa~dv~~lr~~l~~~----~---~~i~IiaKIEt~~gv~NldeIl~~----sDGImIaRGDL----g~elg 355 (577)
-||.+|++++++|++.+.+.+... | ..+++.+.|||..|+-|++||+.. +-|+..||-|+ ...++
T Consensus 213 pYfyLPKles~~Ear~w~dvf~~~E~~lGlp~GTIK~~vLIET~~A~f~meEIl~elr~r~agLn~GrwDyifS~ik~l~ 292 (551)
T PLN02626 213 PFFYLPKMEHSREARLWNDVFEAAEKMAGIPRGSIRATVLIETLPAVFQMEEILYELRDHSAGLNCGRWDYIFSFVKTFR 292 (551)
T ss_pred ceEeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeccHHHHHHHHHHHHHhhhheeeeecChHHHHhHHHHHhc
Confidence 589999999999999998877532 2 458899999999999999999976 45999999999 32222
Q ss_pred C-------C--c----HHHHHH---HHHHHHHHcCCceEEEehhhHhh--hcCCCCChHhH----HHHHHHHHhccceEE
Q 008112 356 I-------E--E----VPLLQE---EIIRTCRSMGKAVIVATNMLESM--IVHPTPTRAEV----SDIAIAVREGADAVM 413 (577)
Q Consensus 356 ~-------e--~----v~~~qk---~Ii~~c~~aGKPvi~ATq~LeSM--~~~~~PtrAEv----~Dv~nav~~G~D~im 413 (577)
. + . ++.++. .++.+|+++|...|. .|.--+ .+.|.+..+.+ .|......+|+|+-+
T Consensus 293 ~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach~rG~~AIg--GM~a~iP~kdd~~~n~~al~~vr~dk~re~~~GfDG~w 370 (551)
T PLN02626 293 AHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCHKRGVHAMG--GMAAQIPIKDDPAANEAALALVRKDKLREVRAGHDGTW 370 (551)
T ss_pred cCCCCCCCCccccchhhHHHHHHHHHHHHHHHhcCCcccc--cccccccCCCChhhhHHHHHHHHHHHHHHHhcCCCcee
Confidence 1 1 2 555555 999999999999764 222211 11233322222 456668999999988
Q ss_pred ec
Q 008112 414 LS 415 (577)
Q Consensus 414 Ls 415 (577)
+-
T Consensus 371 Vi 372 (551)
T PLN02626 371 AA 372 (551)
T ss_pred ec
Confidence 83
No 38
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=96.92 E-value=0.0048 Score=73.25 Aligned_cols=134 Identities=21% Similarity=0.199 Sum_probs=98.1
Q ss_pred CCCCCccCHHHHHHHHhc----CCC---EEEEcCCCCHHHHHHHHHHHHhc--------C--CCceEEEeecChhhHhhH
Q 008112 271 LPSITEKDWDDIKFGVDN----KVD---FYAVSFVKDAQVVHELKNYLKSC--------G--ADIHVIVKIESADSIPNL 333 (577)
Q Consensus 271 lp~ltekD~~dI~~al~~----gvD---~I~~SfV~sa~dv~~lr~~l~~~--------~--~~i~IiaKIEt~~gv~Nl 333 (577)
.|.+.+-..+.|-.|... |.. -|++|||.+.++++++|+.+.+. | .++.|=++||++.|.-.+
T Consensus 669 ~pei~~~QlrAil~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~k~~i~~~~~~l~~~~g~~~~~~iG~MiE~P~aal~a 748 (856)
T TIGR01828 669 YPEIYEMQVRAIMEAAVEVKKEGIDVHPEIMIPLVGEKNELKILKDVLEEVAAEVFKEYGVTVPYEIGTMIEIPRAALTA 748 (856)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccCCeEEEEEehHHHHHHH
Confidence 344444455555444333 632 69999999999999999877532 2 247899999999999999
Q ss_pred HHHHHhcCEEEEcCCCc------------cCCC------------CC-----CcHHHHHHHHHHHHHH--cCCceEEEeh
Q 008112 334 HSIITASDGAMVARGDL------------GAEL------------PI-----EEVPLLQEEIIRTCRS--MGKAVIVATN 382 (577)
Q Consensus 334 deIl~~sDGImIaRGDL------------g~el------------g~-----e~v~~~qk~Ii~~c~~--aGKPvi~ATq 382 (577)
|+|++.+|.+-||--|| +..+ |+ +-|..+.++++++|++ +|+||.++-+
T Consensus 749 d~la~~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i~~a~~~~~~~~vgvCGE 828 (856)
T TIGR01828 749 DKIAEEADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGICGE 828 (856)
T ss_pred HHHHHhCCEEEECccHHHHHHhccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHHHHHhhcCCCCEEEeCCC
Confidence 99999999999995554 2111 22 2467777899999998 8999999877
Q ss_pred hhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 383 MLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 383 ~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
+- ..|.- +.-.+..|.|-+..|
T Consensus 829 ~a------~dp~~-----i~~l~~~Gi~~~S~s 850 (856)
T TIGR01828 829 HG------GDPSS-----IEFCHKIGLNYVSCS 850 (856)
T ss_pred Cc------CCHHH-----HHHHHHCCCCEEEEC
Confidence 54 22333 456788999998887
No 39
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=96.88 E-value=0.0037 Score=73.34 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=92.1
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHHHh--------cC---CCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCcc-----
Q 008112 288 NKVDFYAVSFVKDAQVVHELKNYLKS--------CG---ADIHVIVKIESADSIPNLHSIITASDGAMVARGDLG----- 351 (577)
Q Consensus 288 ~gvD~I~~SfV~sa~dv~~lr~~l~~--------~~---~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg----- 351 (577)
.|-=.|++|||.+.+++.++++.+.+ .| .++++=++||+|.++--+|++++.+|.+-||--||.
T Consensus 549 ~g~l~im~Pmv~~~~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~MiE~Paa~~~~~~~a~~~DF~SIGtNDL~Qy~la 628 (748)
T PRK11061 549 TGNLSILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLASRVDFISVGTNDLTQYLLA 628 (748)
T ss_pred CCCeEEEhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEehHHHHHHHHHHHHhCCEEEECccHHHHHHHH
Confidence 45456999999999999999988763 12 236799999999999999999999999999988863
Q ss_pred CCCCCC-----------cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 352 AELPIE-----------EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 352 ~elg~e-----------~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
++=.-+ -|..+.++++.+|+++||||.++.+|-. -|.. +--.+..|.|.+-++
T Consensus 629 ~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vCGe~a~------dp~~-----~~~L~glGi~~lS~~ 692 (748)
T PRK11061 629 VDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEMAG------DPMG-----ALLLIGLGYRHLSMN 692 (748)
T ss_pred hcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEcCCccc------CHHH-----HHHHHHCCCcEEccC
Confidence 222211 4667778999999999999999988652 2333 446788999987765
No 40
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.77 E-value=0.013 Score=63.27 Aligned_cols=121 Identities=26% Similarity=0.278 Sum_probs=76.0
Q ss_pred CHHHHHHHHhcCCCEEEEcC-------CCCHHHHHHHHHHHHhcCCCceEEE-eecChhhHhhHHHHHHhcCEEEEcCCC
Q 008112 278 DWDDIKFGVDNKVDFYAVSF-------VKDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVARGD 349 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~Sf-------V~sa~dv~~lr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDGImIaRGD 349 (577)
..+.++..++.|+|+|.+.. ..++.+...+.+++++. +++||+ .|-|.+....+-+ .=+|+||+|+|-
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIaG~V~t~e~A~~l~~--aGAD~V~VG~G~ 218 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIVGGCVTYTTALHLMR--TGAAGVLVGIGP 218 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCC
Confidence 44566677899999999853 22222455566666553 578888 8888776665554 349999999886
Q ss_pred ccCCCCCC----cHHHHH--HHHHHHHHHc-------CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEe
Q 008112 350 LGAELPIE----EVPLLQ--EEIIRTCRSM-------GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (577)
Q Consensus 350 Lg~elg~e----~v~~~q--k~Ii~~c~~a-------GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imL 414 (577)
=+...... .+|.+. .+...+++++ +.|+|.+-.+-. -.|++.|+..|+|++|+
T Consensus 219 Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~------------~~diakAlalGAd~Vm~ 284 (368)
T PRK08649 219 GAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGT------------SGDIAKAIACGADAVML 284 (368)
T ss_pred CcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCC------------HHHHHHHHHcCCCeecc
Confidence 21221110 133221 1222222322 689988766543 27899999999999997
No 41
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.64 E-value=0.024 Score=60.94 Aligned_cols=122 Identities=25% Similarity=0.354 Sum_probs=84.2
Q ss_pred CccCHHHHHHHHhcCCCEEEE--cCCCCHHHHHHHHHHHHhcCCCceEEE-eecChhhHhhHHHHHHhcCEEEEcCCC--
Q 008112 275 TEKDWDDIKFGVDNKVDFYAV--SFVKDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVARGD-- 349 (577)
Q Consensus 275 tekD~~dI~~al~~gvD~I~~--SfV~sa~dv~~lr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDGImIaRGD-- 349 (577)
.+.|.+.++..++.|+|+|.+ +...+...+..+++ +++...++.||+ -+-|.++.++|-+ .-+|+|.||=|-
T Consensus 106 ~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~-ik~~~~~~~viaGNV~T~e~a~~L~~--aGad~vkVGiGpGs 182 (352)
T PF00478_consen 106 RDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKK-IKKKFPDVPVIAGNVVTYEGAKDLID--AGADAVKVGIGPGS 182 (352)
T ss_dssp STCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHH-HHHHSTTSEEEEEEE-SHHHHHHHHH--TT-SEEEESSSSST
T ss_pred CHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHH-HHHhCCCceEEecccCCHHHHHHHHH--cCCCEEEEeccCCc
Confidence 345677777788899999887 67777777776665 445555788777 8999999887533 239999999442
Q ss_pred -------ccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEe
Q 008112 350 -------LGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (577)
Q Consensus 350 -------Lg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imL 414 (577)
+|+-.| -..+--+..++|+.+++|+|---.+= --.|++.|+..|+|++||
T Consensus 183 iCtTr~v~GvG~P---Q~tAv~~~a~~a~~~~v~iIADGGi~------------~sGDi~KAla~GAd~VMl 239 (352)
T PF00478_consen 183 ICTTREVTGVGVP---QLTAVYECAEAARDYGVPIIADGGIR------------TSGDIVKALAAGADAVML 239 (352)
T ss_dssp TBHHHHHHSBSCT---HHHHHHHHHHHHHCTTSEEEEESS-S------------SHHHHHHHHHTT-SEEEE
T ss_pred ccccccccccCCc---HHHHHHHHHHHhhhccCceeecCCcC------------cccceeeeeeecccceee
Confidence 223333 34455667788888999998543322 247899999999999998
No 42
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=96.32 E-value=0.019 Score=64.57 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=95.7
Q ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHh-------c----CCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCc
Q 008112 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKS-------C----GADIHVIVKIESADSIPNLHSIITASDGAMVARGDL 350 (577)
Q Consensus 282 I~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~-------~----~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDL 350 (577)
|-+|-.+|-=.|++|+|-+.++++++|+.+.+ . +.++.+=.+||+|.+.-.+|.+++.+|-+=||--||
T Consensus 378 ilRAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsAa~~a~~lakevDFfSIGTNDL 457 (574)
T COG1080 378 ILRASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSAALIADQLAKEVDFFSIGTNDL 457 (574)
T ss_pred HHHhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhHHHHHHHHHHHhCCEeeecccHH
Confidence 34555677778999999999999999988742 1 236888999999999999999999999999998886
Q ss_pred c-----CCCCCC-----------cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEe
Q 008112 351 G-----AELPIE-----------EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (577)
Q Consensus 351 g-----~elg~e-----------~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imL 414 (577)
. ++=+-+ -|..+.++++..++++||||+++..|- -. |.- +--.+..|.|-+-+
T Consensus 458 tQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgmCGElA----gD--~~a-----~plLlGlGldElSm 526 (574)
T COG1080 458 TQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGMCGELA----GD--PAA-----TPLLLGLGLDELSM 526 (574)
T ss_pred HHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeeeechhhc----cC--hhh-----HHHHHhcCcchhcc
Confidence 3 332222 477778999999999999999987754 22 222 33577788888776
Q ss_pred c
Q 008112 415 S 415 (577)
Q Consensus 415 s 415 (577)
|
T Consensus 527 s 527 (574)
T COG1080 527 S 527 (574)
T ss_pred C
Confidence 6
No 43
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.28 E-value=0.072 Score=56.67 Aligned_cols=123 Identities=26% Similarity=0.367 Sum_probs=77.9
Q ss_pred ccCHHHHHHHHhcCCCEEEEcCCC-CHHHHHHHHHHHHhcCCCceEEE-eecChhhHhhHHHHHHh-cCEEEEc--CCCc
Q 008112 276 EKDWDDIKFGVDNKVDFYAVSFVK-DAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITA-SDGAMVA--RGDL 350 (577)
Q Consensus 276 ekD~~dI~~al~~gvD~I~~SfV~-sa~dv~~lr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~-sDGImIa--RGDL 350 (577)
+.+.+.++..++.|+|+|.+++-. +.+.+.++.+.+++...++.|++ .+.|.+... ..++. +|+|.++ +|--
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~---~l~~aGaD~I~vg~g~G~~ 169 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAAR---DLIDAGADGVKVGIGPGSI 169 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHH---HHHhcCCCEEEECCCCCcC
Confidence 556778888899999999886532 23445555555655555678876 666655544 44445 9999984 3221
Q ss_pred c--CC---CCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEe
Q 008112 351 G--AE---LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (577)
Q Consensus 351 g--~e---lg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imL 414 (577)
. -. .+.. ...+-..+.+.++..++|+|-+-.+- + -.|++.++..|+|++|+
T Consensus 170 ~~t~~~~g~g~p-~~~~i~~v~~~~~~~~vpVIA~GGI~---------~---~~di~kAla~GA~~Vmi 225 (325)
T cd00381 170 CTTRIVTGVGVP-QATAVADVAAAARDYGVPVIADGGIR---------T---SGDIVKALAAGADAVML 225 (325)
T ss_pred cccceeCCCCCC-HHHHHHHHHHHHhhcCCcEEecCCCC---------C---HHHHHHHHHcCCCEEEe
Confidence 1 00 1111 12233556677777899998543332 2 36799999999999998
No 44
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=95.88 E-value=0.031 Score=62.40 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=78.3
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhcCC-----------------------CceEEEeecChhhHhhHHHHHHh----cC
Q 008112 289 KVDFYAVSFVKDAQVVHELKNYLKSCGA-----------------------DIHVIVKIESADSIPNLHSIITA----SD 341 (577)
Q Consensus 289 gvD~I~~SfV~sa~dv~~lr~~l~~~~~-----------------------~i~IiaKIEt~~gv~NldeIl~~----sD 341 (577)
.+-.|++||.++++|+.++..+..+.+- .+.||..+||.+++.|.++|+.. .+
T Consensus 122 pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~l~~~~ 201 (506)
T TIGR02751 122 PIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEYAEAHE 201 (506)
T ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHHHHhcC
Confidence 4557999999999999999888876541 35799999999999999999986 21
Q ss_pred ----EEEEcCCCccCCCCCC----cHHHHHHHHHHHHHHcCCceEEE
Q 008112 342 ----GAMVARGDLGAELPIE----EVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 342 ----GImIaRGDLg~elg~e----~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
-||+||.|=+.+.|+- .+..+|.++.+.|+++|.++..-
T Consensus 202 ~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~pf 248 (506)
T TIGR02751 202 PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYPI 248 (506)
T ss_pred cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 7899999999998865 57889999999999999998653
No 45
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=95.73 E-value=0.046 Score=65.18 Aligned_cols=135 Identities=21% Similarity=0.175 Sum_probs=99.0
Q ss_pred CCCCCCccCHHHHHHHHh----cCCC---EEEEcCCCCHHHHHHHHHHHH--------hcCC--CceEEEeecChhhHhh
Q 008112 270 TLPSITEKDWDDIKFGVD----NKVD---FYAVSFVKDAQVVHELKNYLK--------SCGA--DIHVIVKIESADSIPN 332 (577)
Q Consensus 270 ~lp~ltekD~~dI~~al~----~gvD---~I~~SfV~sa~dv~~lr~~l~--------~~~~--~i~IiaKIEt~~gv~N 332 (577)
..|.+.+-..+.|..|.. .|.+ -|++|+|.+.++++.+++.+. +.|. +.++=.+||++.|.--
T Consensus 674 ~~pei~~~QlrAI~~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~r~~i~~~~~~~~~e~g~~~~~~vG~MIEvP~Aal~ 753 (879)
T PRK09279 674 TYPEIYEMQARAIFEAAVELKKEGIDVVPEIMIPLVGTVKELKLVKAIIDAVAEEVFAEKGVKLDYKVGTMIELPRAALT 753 (879)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEehHHHHHh
Confidence 345555555556654432 3643 499999999999999998662 2232 4789999999999999
Q ss_pred HHHHHHhcCEEEEcCCCccC------------CC------------CCC-----cHHHHHHHHHHHHHH--cCCceEEEe
Q 008112 333 LHSIITASDGAMVARGDLGA------------EL------------PIE-----EVPLLQEEIIRTCRS--MGKAVIVAT 381 (577)
Q Consensus 333 ldeIl~~sDGImIaRGDLg~------------el------------g~e-----~v~~~qk~Ii~~c~~--aGKPvi~AT 381 (577)
+|+|++.+|.+-||--||.- -+ |+. -|-.+.+..+.+|++ .|+|+.++-
T Consensus 754 ad~iA~~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~~~~vgICG 833 (879)
T PRK09279 754 ADEIAEEAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAVERGRATRPDLKLGICG 833 (879)
T ss_pred HHHHHHhCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 99999999999999655421 11 222 366777888999998 799999987
Q ss_pred hhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 382 NMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 382 q~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
++- .-|.- +.-++..|.|-+..|
T Consensus 834 E~g------gdp~~-----i~~l~~lGld~vS~s 856 (879)
T PRK09279 834 EHG------GDPAS-----IEFCHKVGLDYVSCS 856 (879)
T ss_pred CCc------cCHHH-----HHHHHHCCCCEEEEC
Confidence 643 23333 557888999999887
No 46
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=95.60 E-value=0.086 Score=57.13 Aligned_cols=121 Identities=24% Similarity=0.325 Sum_probs=70.0
Q ss_pred HHHHHHHHhcCCCEEEEc-------CCCCHHHHHHHHHHHHhcCCCceEEE-eecChhhHhhHHHHHHhcCEEEEcCCCc
Q 008112 279 WDDIKFGVDNKVDFYAVS-------FVKDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVARGDL 350 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~S-------fV~sa~dv~~lr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDGImIaRGDL 350 (577)
.+..+.+++.|+|+|++. |+....+-..+.+++++. +++||+ .+-|.+....+-+ .=+|+||+|||--
T Consensus 145 ~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~G~V~t~e~A~~~~~--aGaDgV~~G~gg~ 220 (369)
T TIGR01304 145 REIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIAGGVNDYTTALHLMR--TGAAGVIVGPGGA 220 (369)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCC
Confidence 455567789999999875 222222334455555443 578887 6666555443333 2499999998642
Q ss_pred cCCCCCC--cHH--HHHHHHHHHHH----HcC---CceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 351 GAELPIE--EVP--LLQEEIIRTCR----SMG---KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 351 g~elg~e--~v~--~~qk~Ii~~c~----~aG---KPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
...-... .+| .+-..+..+++ +.| +|+|.+..+-.+ .|++.|+..|+|++|+.
T Consensus 221 ~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg------------~di~kAlAlGAdaV~iG 284 (369)
T TIGR01304 221 NTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETS------------GDLVKAIACGADAVVLG 284 (369)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCH------------HHHHHHHHcCCCEeeeH
Confidence 1111000 122 11122222222 223 899877665432 68999999999999984
No 47
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=95.35 E-value=0.069 Score=59.63 Aligned_cols=93 Identities=17% Similarity=0.195 Sum_probs=79.5
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHHHhcC--------------CCceEEEeecChhhHhhHHHHHHh----------cCEE
Q 008112 288 NKVDFYAVSFVKDAQVVHELKNYLKSCG--------------ADIHVIVKIESADSIPNLHSIITA----------SDGA 343 (577)
Q Consensus 288 ~gvD~I~~SfV~sa~dv~~lr~~l~~~~--------------~~i~IiaKIEt~~gv~NldeIl~~----------sDGI 343 (577)
..+..+++||.++++|+.++..++++.+ ..+.|+..+||.+.+.|.++|+.. .--|
T Consensus 120 ~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~~~qeV 199 (494)
T PRK13655 120 QPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHGKYLRV 199 (494)
T ss_pred hhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcCCeeEE
Confidence 4566789999999999999988876554 147899999999999999999975 1389
Q ss_pred EEcCCCccCCCCCC----cHHHHHHHHHHHHHHcCCceEEE
Q 008112 344 MVARGDLGAELPIE----EVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 344 mIaRGDLg~elg~e----~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
|+|+.|=+.+-|+- .+..+|.++.+.|+++|+++..-
T Consensus 200 mlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~f 240 (494)
T PRK13655 200 FLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYPI 240 (494)
T ss_pred EEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEEe
Confidence 99999999888865 68889999999999999998653
No 48
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=94.70 E-value=0.44 Score=53.65 Aligned_cols=123 Identities=24% Similarity=0.318 Sum_probs=78.0
Q ss_pred ccCHHHHHHHHhcCCCEEEEcCC--CCHHHHHHHHHHHHhcCCCceEEE-eecChhhHhhHHHHHHh-cCEEEEc--CCC
Q 008112 276 EKDWDDIKFGVDNKVDFYAVSFV--KDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITA-SDGAMVA--RGD 349 (577)
Q Consensus 276 ekD~~dI~~al~~gvD~I~~SfV--~sa~dv~~lr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~-sDGImIa--RGD 349 (577)
+.+.+.++..++.|+|.|.+..- .+...++.+++ +++.-.++.|++ -+-|.+... ..+++ +|+|.+| +|-
T Consensus 240 ~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~-ik~~~~~~~v~aG~V~t~~~a~---~~~~aGad~I~vg~g~Gs 315 (495)
T PTZ00314 240 PEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKK-LKSNYPHVDIIAGNVVTADQAK---NLIDAGADGLRIGMGSGS 315 (495)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHH-HHhhCCCceEEECCcCCHHHHH---HHHHcCCCEEEECCcCCc
Confidence 34577777888999999997754 34433333333 333334688888 455555444 44455 9999875 552
Q ss_pred cc-----CCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 350 LG-----AELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 350 Lg-----~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
-. ...+... ..+-..+.+.|++.|.|+|....+. +. .|++.|+..|+|++|+.
T Consensus 316 ~~~t~~~~~~g~p~-~~ai~~~~~~~~~~~v~vIadGGi~---------~~---~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 316 ICITQEVCAVGRPQ-ASAVYHVARYARERGVPCIADGGIK---------NS---GDICKALALGADCVMLG 373 (495)
T ss_pred ccccchhccCCCCh-HHHHHHHHHHHhhcCCeEEecCCCC---------CH---HHHHHHHHcCCCEEEEC
Confidence 11 1122222 2344567778899999988654433 22 67999999999999985
No 49
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=94.45 E-value=0.17 Score=60.69 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=101.8
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhcC--------CCceEEEeecChhhHhhHHHHHHh--c--------------CEEE
Q 008112 289 KVDFYAVSFVKDAQVVHELKNYLKSCG--------ADIHVIVKIESADSIPNLHSIITA--S--------------DGAM 344 (577)
Q Consensus 289 gvD~I~~SfV~sa~dv~~lr~~l~~~~--------~~i~IiaKIEt~~gv~NldeIl~~--s--------------DGIm 344 (577)
.+..+++|+.++++|+.++..++++.| ..+.|+...||.+.++|.++|++. . --||
T Consensus 486 ~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~~~~~qeVM 565 (911)
T PRK00009 486 AIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGNLQEVM 565 (911)
T ss_pred hhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhcCCCeEEEE
Confidence 556789999999999999998888765 257899999999999999999985 1 1699
Q ss_pred EcCCCccCCCCCC----cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCC
Q 008112 345 VARGDLGAELPIE----EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAH 420 (577)
Q Consensus 345 IaRGDLg~elg~e----~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~ 420 (577)
+|.-|=+.+-|+- .+..+|+++.+.|+++|+++.+.=..=-|.-....|+..-+..-..-...|-==+---||+-.
T Consensus 566 lGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~FhGrGGsv~RGGgp~~~ai~~qp~g~~~g~iR~TeQGEvI~ 645 (911)
T PRK00009 566 LGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTLFHGRGGTVGRGGGPAYAAILSQPPGSVKGRIRVTEQGEVIR 645 (911)
T ss_pred eecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCChHHHHHHhCCCccccCceEEEeechhHH
Confidence 9999988888865 688999999999999999987654433333344444442221111111111000222344323
Q ss_pred C--CCHHHHHHHHHHHHHHH
Q 008112 421 G--KFPLKAVKVMHTVSLRT 438 (577)
Q Consensus 421 G--~yP~eaV~~m~~I~~~a 438 (577)
- .+|..|++.|.......
T Consensus 646 ~kY~~~~~a~~nLE~~~~a~ 665 (911)
T PRK00009 646 SKYGLPEVARRNLELLTAAT 665 (911)
T ss_pred HhcCChHHHHHHHHHHHHHH
Confidence 2 34777777665555444
No 50
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=94.43 E-value=0.24 Score=56.08 Aligned_cols=131 Identities=16% Similarity=0.190 Sum_probs=100.6
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhc-------C----CCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCc-----cCCCC
Q 008112 292 FYAVSFVKDAQVVHELKNYLKSC-------G----ADIHVIVKIESADSIPNLHSIITASDGAMVARGDL-----GAELP 355 (577)
Q Consensus 292 ~I~~SfV~sa~dv~~lr~~l~~~-------~----~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDL-----g~elg 355 (577)
-|.+|+|.+.+++++.++++... + ...+|=+++|-+.-+..+|+++..+|-|-||-.|| +++=+
T Consensus 561 ~imLPMVt~v~E~~~Ar~li~ra~~~v~~~~~~~~~~~~iG~MlEvPsll~~L~~L~~~vDFvSVGtNDL~QyllAvDR~ 640 (756)
T COG3605 561 RILLPMVTEVDEVDEARRLIERAVREVSEMGGYLPPKPRIGAMLEVPSLLFQLDELAKRVDFVSVGTNDLTQYLLAVDRN 640 (756)
T ss_pred eeeeecccchHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcceeeehhHHHHhHHHHHhhCCEEEecchHHHHHHHHHhcC
Confidence 58999999999999999988532 2 24668899999999999999999999999999886 34433
Q ss_pred CC-----------cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCH
Q 008112 356 IE-----------EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 424 (577)
Q Consensus 356 ~e-----------~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP 424 (577)
-. -+..+-|+|..+|..+|+||-++.+|- ..|-- ..-.+..|++.+-+| -|++|+
T Consensus 641 N~RVad~yD~L~pa~LraLk~I~~a~~~~~~pVtlCGEMA------g~Pl~-----A~~LigLGfrslSMn-~~~v~~-- 706 (756)
T COG3605 641 NTRVADRYDSLHPAFLRALKQIVRAAERHGTPVTLCGEMA------GDPLS-----AMALIGLGFRSLSMN-PRSVGP-- 706 (756)
T ss_pred CchhhhhhcccCHHHHHHHHHHHHHHHhcCCCeeehhhhc------CChHH-----HHHHHhcCcCccccC-cccccc--
Confidence 32 355677999999999999999988765 23433 345678999998886 466665
Q ss_pred HHHHHHHHHHHHHHh
Q 008112 425 LKAVKVMHTVSLRTE 439 (577)
Q Consensus 425 ~eaV~~m~~I~~~aE 439 (577)
||+|-+=+..++
T Consensus 707 ---VK~ml~~ld~~~ 718 (756)
T COG3605 707 ---VKYLLRHLDLAE 718 (756)
T ss_pred ---HHHHHHhccHHH
Confidence 666655444444
No 51
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=94.28 E-value=0.64 Score=52.50 Aligned_cols=125 Identities=20% Similarity=0.249 Sum_probs=78.9
Q ss_pred CccCHHHHHHHHhcCCCEEEEcCC--CCHHHHHHHHHHHHhcCCCceEEEe-ecChhhHhhHHHHHHhcCEEEEc--CCC
Q 008112 275 TEKDWDDIKFGVDNKVDFYAVSFV--KDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITASDGAMVA--RGD 349 (577)
Q Consensus 275 tekD~~dI~~al~~gvD~I~~SfV--~sa~dv~~lr~~l~~~~~~i~IiaK-IEt~~gv~NldeIl~~sDGImIa--RGD 349 (577)
.+.+.+-++..++.|+|+|++--- .+...+ +..+.++..-.+..||++ |-|.+.-.++.+ .=+|+|.++ +|=
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~-~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g~G~ 322 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQL-EMIKYIKKTYPELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMGSGS 322 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHH-HHHHHHHHhCCCCcEEEecCCCHHHHHHHHH--cCcCEEEECCCCCc
Confidence 356677888889999999987543 222212 222334333356788775 999887666554 349999886 442
Q ss_pred ccCC-----CCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 350 LGAE-----LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 350 Lg~e-----lg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
-+.. .+...+ ..-..+.+.+++.++|+|....+-. -.|+..|+..|+|++|+.
T Consensus 323 ~~~t~~~~~~g~~~~-~~i~~~~~~~~~~~vpVIadGGI~~------------~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 323 ICTTQEVCAVGRGQA-TAVYKVASIAAQHGVPVIADGGISN------------SGHIVKALTLGASTVMMG 380 (505)
T ss_pred cccCccccccCCCcc-cHHHHHHHHHHhcCCeEEEeCCCCC------------HHHHHHHHHcCCCEEEEc
Confidence 1111 111111 2233355667778999998665442 267999999999999984
No 52
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.08 E-value=0.62 Score=52.27 Aligned_cols=129 Identities=16% Similarity=0.204 Sum_probs=85.1
Q ss_pred CCCccCHHHHHHHHhcCCCEEEEcCCC-CHHHHHHHHHHHHhcCCCceEEE-eecChhhHhhHHHHHHhcCEEEEc--CC
Q 008112 273 SITEKDWDDIKFGVDNKVDFYAVSFVK-DAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVA--RG 348 (577)
Q Consensus 273 ~ltekD~~dI~~al~~gvD~I~~SfV~-sa~dv~~lr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDGImIa--RG 348 (577)
.+++.+.+.+...++.|+|.|++---. ....+.++.+.++....++.||+ -+-|.++..++.+ +=+|+|-|| +|
T Consensus 223 ~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~--aGad~v~vgig~g 300 (479)
T PRK07807 223 GINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVE--AGADIVKVGVGPG 300 (479)
T ss_pred ccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHH--cCCCEEEECccCC
Confidence 345666777777888999998864221 12444555555666566899999 9999999888766 349998866 32
Q ss_pred CccCCCCCC--c--HHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 349 DLGAELPIE--E--VPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 349 DLg~elg~e--~--v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
-...--+.. . -..+-.++.+.|++.|+|||-.-.+ .+. .|++.++..|+|++|+.
T Consensus 301 sictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi---------~~~---~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 301 AMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGV---------RHP---RDVALALAAGASNVMIG 359 (479)
T ss_pred cccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCC---------CCH---HHHHHHHHcCCCeeecc
Confidence 221111111 1 2233355666677789999965443 333 67999999999999984
No 53
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=93.70 E-value=1.1 Score=47.46 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=71.3
Q ss_pred CHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCC
Q 008112 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPI 356 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~ 356 (577)
..+.++..++.++++|.++|-...+.+.+++ .. .+.+++.+=|.+ ......+. +|+|.+---+-|-..+.
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk----~~--g~~v~~~v~s~~---~a~~a~~~GaD~Ivv~g~eagGh~g~ 146 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGNPGKYIPRLK----EN--GVKVIPVVASVA---LAKRMEKAGADAVIAEGMESGGHIGE 146 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcHHHHHHHH----Hc--CCEEEEEcCCHH---HHHHHHHcCCCEEEEECcccCCCCCC
Confidence 3466777889999999998865544444443 33 477888885543 34444444 99998732233333332
Q ss_pred CcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 357 EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 357 e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
..-....+++. +..++|+|.+-.+- .-.|++.++..|+|++++.
T Consensus 147 ~~~~~ll~~v~---~~~~iPviaaGGI~------------~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 147 LTTMALVPQVV---DAVSIPVIAAGGIA------------DGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred CcHHHHHHHHH---HHhCCCEEEECCCC------------CHHHHHHHHHcCCCEeecc
Confidence 22223333333 34479999876654 2356888888999999985
No 54
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=93.57 E-value=0.98 Score=50.20 Aligned_cols=126 Identities=22% Similarity=0.257 Sum_probs=79.9
Q ss_pred CccCHHHHHHHHhcCCCEEEEcCCC-CHHHHHHHHHHHHhcCCCceEEE-eecChhhHhhHHHHHHhcCEEEEc--CCCc
Q 008112 275 TEKDWDDIKFGVDNKVDFYAVSFVK-DAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVA--RGDL 350 (577)
Q Consensus 275 tekD~~dI~~al~~gvD~I~~SfV~-sa~dv~~lr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDGImIa--RGDL 350 (577)
.+.+.+..+..++.|+|+|.+-..+ +-..+.+..+.+.+.-.++.|++ -+-|+++..++-+ .=+|+|-+| +|--
T Consensus 222 ~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~--aGad~i~vg~g~G~~ 299 (450)
T TIGR01302 222 REFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALID--AGADGLRVGIGPGSI 299 (450)
T ss_pred chhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHH--hCCCEEEECCCCCcC
Confidence 4566777778889999999876532 11233333333443334677777 6777776665544 238999866 5522
Q ss_pred cCC-----CCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 351 GAE-----LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 351 g~e-----lg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
... .+.. -..+..++.+.|++.++|+|....+- + -.|++.|+..|+|++|+.
T Consensus 300 ~~t~~~~~~g~p-~~~~i~~~~~~~~~~~vpviadGGi~---------~---~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 300 CTTRIVAGVGVP-QITAVYDVAEYAAQSGIPVIADGGIR---------Y---SGDIVKALAAGADAVMLG 356 (450)
T ss_pred CccceecCCCcc-HHHHHHHHHHHHhhcCCeEEEeCCCC---------C---HHHHHHHHHcCCCEEEEC
Confidence 111 1211 12344567777888999988654433 2 267999999999999984
No 55
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.49 E-value=0.93 Score=49.82 Aligned_cols=125 Identities=18% Similarity=0.265 Sum_probs=78.3
Q ss_pred CccCHHHHHHHHhcCCCEEE--EcCCCCHHHHHHHHHHHHhcCCCceEEE-eecChhhHhhHHHHHHhcCEEEEcCCCcc
Q 008112 275 TEKDWDDIKFGVDNKVDFYA--VSFVKDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVARGDLG 351 (577)
Q Consensus 275 tekD~~dI~~al~~gvD~I~--~SfV~sa~dv~~lr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDGImIaRGDLg 351 (577)
++.+.+.++..++.|+|+|+ .+.=. .+.+.++.+.+++.-.+..+|+ -|-|.++..++.+. =+|+|.+|-|-=+
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a~g~-~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a--GaD~I~vG~g~Gs 227 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSAHGH-STRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV--GADCLKVGIGPGS 227 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCC-ChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc--CCCEEEECCCCCc
Confidence 34466788888999999998 44322 3445455555555445666655 78888877666552 3999998743211
Q ss_pred C-------CCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 352 A-------ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 352 ~-------elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
. ..+...+ .+-..+.+.+++.+.|+|..-.+- + -.|++.|+..|+|++|+.
T Consensus 228 ~c~tr~~~g~g~p~l-tai~~v~~~~~~~~vpVIAdGGI~---------~---~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 228 ICTTRIVAGVGVPQI-TAICDVYEVCKNTNICIIADGGIR---------F---SGDVVKAIAAGADSVMIG 285 (404)
T ss_pred CCcceeecCCCCChH-HHHHHHHHHHhhcCCeEEEeCCCC---------C---HHHHHHHHHcCCCEEEEc
Confidence 1 1121111 122334455667799998754433 2 367999999999999983
No 56
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.42 E-value=1.3 Score=47.43 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=79.0
Q ss_pred CccCHHHHHHHHh--cCCCEEEEc--CCCCHHHHHHHHHHHHhcCCCceEEE-eecChhhHhhHHHHHHhcCEEEEcCCC
Q 008112 275 TEKDWDDIKFGVD--NKVDFYAVS--FVKDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVARGD 349 (577)
Q Consensus 275 tekD~~dI~~al~--~gvD~I~~S--fV~sa~dv~~lr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDGImIaRGD 349 (577)
.+.|.+-++..++ .|+|+|.+- .=.|...++.+ +.+++.-.++.||+ -+-|+++.++|-+ +=+|++-||=|-
T Consensus 106 ~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~i-k~ik~~~P~~~vIaGNV~T~e~a~~Li~--aGAD~vKVGIGp 182 (346)
T PRK05096 106 SDADFEKTKQILALSPALNFICIDVANGYSEHFVQFV-AKAREAWPDKTICAGNVVTGEMVEELIL--SGADIVKVGIGP 182 (346)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHH-HHHHHhCCCCcEEEecccCHHHHHHHHH--cCCCEEEEcccC
Confidence 4566777776676 499998753 33344444444 34554445667777 7999998877533 349999877332
Q ss_pred ccCCCCCC----cHH--HHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 350 LGAELPIE----EVP--LLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 350 Lg~elg~e----~v~--~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
=++-..-. -+| .+-.+..+.|++.|+|+|---. .. --.|++.|+..|+|++||.
T Consensus 183 GSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGG---------i~---~sGDI~KAlaaGAd~VMlG 242 (346)
T PRK05096 183 GSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGG---------CT---VPGDVAKAFGGGADFVMLG 242 (346)
T ss_pred CccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCC---------cc---cccHHHHHHHcCCCEEEeC
Confidence 11111111 123 2334566777888999884322 11 2378999999999999984
No 57
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=93.39 E-value=1.5 Score=47.03 Aligned_cols=126 Identities=15% Similarity=0.162 Sum_probs=78.4
Q ss_pred CccCHHHHHHHHhc--CCCEEEEc--CCCCHHHHHHHHHHHHhcCCCceEEEe-ecChhhHhhHHHHHHhcCEEEEcCCC
Q 008112 275 TEKDWDDIKFGVDN--KVDFYAVS--FVKDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITASDGAMVARGD 349 (577)
Q Consensus 275 tekD~~dI~~al~~--gvD~I~~S--fV~sa~dv~~lr~~l~~~~~~i~IiaK-IEt~~gv~NldeIl~~sDGImIaRGD 349 (577)
.+.|.+-++..++. ++|+|.+- .=.|...++.+ +++++.-.+..||+- |-|+++.+++-+ .=+|+|.|+=|-
T Consensus 105 ~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~i-k~ir~~~p~~~viaGNV~T~e~a~~Li~--aGAD~ikVgiGp 181 (343)
T TIGR01305 105 SDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFV-KLVREAFPEHTIMAGNVVTGEMVEELIL--SGADIVKVGIGP 181 (343)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHH-HHHHhhCCCCeEEEecccCHHHHHHHHH--cCCCEEEEcccC
Confidence 55677777777777 49998763 33333333333 334444456788887 999998775543 349999987222
Q ss_pred ccCCCCCC--cHH----HHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 350 LGAELPIE--EVP----LLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 350 Lg~elg~e--~v~----~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
=++..+-. .+. .+-.++.++++..++|+|.-..+= .-.||+.|+..|+|++|+.
T Consensus 182 GSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr------------~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 182 GSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCT------------CPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred CCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcC------------chhHHHHHHHcCCCEEEEC
Confidence 12222211 222 233445555566688888643322 2378999999999999995
No 58
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.81 E-value=5.8 Score=40.40 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=79.2
Q ss_pred HHHHHHHhcCCCEEEEcC--CCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEE---cCCCccCCC
Q 008112 280 DDIKFGVDNKVDFYAVSF--VKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMV---ARGDLGAEL 354 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~Sf--V~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImI---aRGDLg~el 354 (577)
+.++.+.+.|+|+|.++- ++..++..++.+.+++.|-+..+...=+|+ .+.+..+++.+|++++ -+|..+ .
T Consensus 92 ~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~--~e~l~~~~~~~~~~l~msv~~~~g~-~- 167 (244)
T PRK13125 92 NFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP--DLLIHRLSKLSPLFIYYGLRPATGV-P- 167 (244)
T ss_pred HHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC--HHHHHHHHHhCCCEEEEEeCCCCCC-C-
Confidence 347778899999999985 566788999999999888887777776664 6788999999998863 334422 2
Q ss_pred CCCcHHHHHHHHHHHHHHc--CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 355 PIEEVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 355 g~e~v~~~qk~Ii~~c~~a--GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
++.-....++..++. .+|+.+-- ..=+. .++..+...|+|++...
T Consensus 168 ----~~~~~~~~i~~lr~~~~~~~i~v~g---------GI~~~---e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 168 ----LPVSVERNIKRVRNLVGNKYLVVGF---------GLDSP---EDARDALSAGADGVVVG 214 (244)
T ss_pred ----chHHHHHHHHHHHHhcCCCCEEEeC---------CcCCH---HHHHHHHHcCCCEEEEC
Confidence 333334444444544 36765422 22233 35667778999998874
No 59
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=92.70 E-value=2.2 Score=42.80 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=47.9
Q ss_pred CccCHHH-HHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEE----eecChh-hHhhHHHHHHh-cCEEEEcC
Q 008112 275 TEKDWDD-IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIV----KIESAD-SIPNLHSIITA-SDGAMVAR 347 (577)
Q Consensus 275 tekD~~d-I~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~Iia----KIEt~~-gv~NldeIl~~-sDGImIaR 347 (577)
++++.+. .+.+.+.|+|||.++|..+.+.++++.+.+ .+++++ ++.|.+ .++|+.+.++. ++|+.+||
T Consensus 141 ~~~~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~~-----~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~ 215 (235)
T cd00958 141 DPDLIAYAARIGAELGADIVKTKYTGDAESFKEVVEGC-----PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGR 215 (235)
T ss_pred CHHHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHhcC-----CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEech
Confidence 4444444 455889999999999877555555554322 344433 223322 56888998888 99999998
Q ss_pred CCccCC
Q 008112 348 GDLGAE 353 (577)
Q Consensus 348 GDLg~e 353 (577)
.=+..+
T Consensus 216 ~i~~~~ 221 (235)
T cd00958 216 NIFQRP 221 (235)
T ss_pred hhhcCC
Confidence 766444
No 60
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=92.29 E-value=8.8 Score=38.69 Aligned_cols=155 Identities=15% Similarity=0.083 Sum_probs=101.1
Q ss_pred CccC-HHHHHHHHhcCCCEEEEcCCCCH------HHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEc
Q 008112 275 TEKD-WDDIKFGVDNKVDFYAVSFVKDA------QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVA 346 (577)
Q Consensus 275 tekD-~~dI~~al~~gvD~I~~SfV~sa------~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIa 346 (577)
+..+ .+.++...+.|+|.|-+.+-... ++..++-+.+.+.+.+..+.+..=+ +.+.++...+. .|.|.+.
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~--~~~~i~~a~~~g~~~i~i~ 94 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN--REKGIERALEAGVDEVRIF 94 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccC--chhhHHHHHhCCcCEEEEE
Confidence 4444 44455666789999998888877 6777766667666656666565533 24445555554 5666654
Q ss_pred CCCccCC---------CCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHH-HHHhccceEEecc
Q 008112 347 RGDLGAE---------LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSG 416 (577)
Q Consensus 347 RGDLg~e---------lg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~n-av~~G~D~imLs~ 416 (577)
+..+ .+.+.....-...++.++++|.++.+.+... ..+.-+..++.+++. +...|+|.+.|.
T Consensus 95 ---~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~----~~~~~~~~~l~~~~~~~~~~g~~~i~l~- 166 (265)
T cd03174 95 ---DSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDA----FGCKTDPEYVLEVAKALEEAGADEISLK- 166 (265)
T ss_pred ---EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee----cCCCCCHHHHHHHHHHHHHcCCCEEEec-
Confidence 1111 2222344555677888999999988765322 111245666766666 667899999985
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHh
Q 008112 417 ETAHGKFPLKAVKVMHTVSLRTE 439 (577)
Q Consensus 417 ETa~G~yP~eaV~~m~~I~~~aE 439 (577)
+|.=.-+|.+.-++++.+.+...
T Consensus 167 Dt~G~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 167 DTVGLATPEEVAELVKALREALP 189 (265)
T ss_pred hhcCCcCHHHHHHHHHHHHHhCC
Confidence 77777889988888888876655
No 61
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=92.22 E-value=0.66 Score=56.20 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=103.9
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHhcC-----CCceEEEeecChhhHhhHHHHHHh--c---------------CEEEEcCC
Q 008112 291 DFYAVSFVKDAQVVHELKNYLKSCG-----ADIHVIVKIESADSIPNLHSIITA--S---------------DGAMVARG 348 (577)
Q Consensus 291 D~I~~SfV~sa~dv~~lr~~l~~~~-----~~i~IiaKIEt~~gv~NldeIl~~--s---------------DGImIaRG 348 (577)
..+++|+.++++||.++..+.++.| ..+.|+...||.+.++|.++|++. . --||+|+-
T Consensus 547 g~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGYS 626 (974)
T PTZ00398 547 GAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGYS 626 (974)
T ss_pred ceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEecc
Confidence 3478999999999999998887744 247899999999999999999975 1 17999999
Q ss_pred CccCCCCCC----cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCH
Q 008112 349 DLGAELPIE----EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 424 (577)
Q Consensus 349 DLg~elg~e----~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP 424 (577)
|=+.+-|+- .+..+|.++.+.|+++|+.+.+.=..=.|+-....|+..-+..--.....|.=-+-.-||+-.-+|+
T Consensus 627 DS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~FhGrGGsvgRGGgp~~~aIlsqp~~~~~g~ir~TeQGE~i~~ky~ 706 (974)
T PTZ00398 627 DSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFFHGRGGSVSRGGGPQHLAILSQPPNTIKSYLRITIQGETITQNFG 706 (974)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCCChHHHHhcCCCccccCeeEEeeechhhHHhcC
Confidence 988888865 6889999999999999999987655556666666776632211111112233223345555555665
Q ss_pred HH--HHHHHHHHHHH
Q 008112 425 LK--AVKVMHTVSLR 437 (577)
Q Consensus 425 ~e--aV~~m~~I~~~ 437 (577)
.. |.+.+......
T Consensus 707 ~~~~a~~~le~~~aA 721 (974)
T PTZ00398 707 LKGICLRTWELYMSA 721 (974)
T ss_pred ChHHHHHHHHHHHHH
Confidence 43 45555554333
No 62
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=91.99 E-value=2.7 Score=42.47 Aligned_cols=150 Identities=11% Similarity=0.124 Sum_probs=91.3
Q ss_pred CCCCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHH--HhcCEEEEc
Q 008112 269 ATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSII--TASDGAMVA 346 (577)
Q Consensus 269 ~~lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl--~~sDGImIa 346 (577)
+++--++..=...++...+.|+|+|.+-+--+...+.+..+.+++.|..+.+-..-+| .++.+.+++ ...|.|++
T Consensus 68 lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t--~~e~l~~~l~~~~vD~Vl~- 144 (228)
T PTZ00170 68 LDCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKT--PVEVLFPLIDTDLVDMVLV- 144 (228)
T ss_pred EEEEECCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHccchhhhHHh-
Confidence 3333333333445567788999999886544433378888888888876665555554 688999998 67898876
Q ss_pred CCCccCCCCCCcHHH---HHHHHHHHHHHcC-CceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCC
Q 008112 347 RGDLGAELPIEEVPL---LQEEIIRTCRSMG-KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 422 (577)
Q Consensus 347 RGDLg~elg~e~v~~---~qk~Ii~~c~~aG-KPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~ 422 (577)
++++-|...... .-.++-+.....+ ..+.++ .-+ +. ..+..++..|+|.+.+.+--....
T Consensus 145 ---m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~Vd-GGI---------~~---~ti~~~~~aGad~iVvGsaI~~a~ 208 (228)
T PTZ00170 145 ---MTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVD-GGI---------NL---ETIDIAADAGANVIVAGSSIFKAK 208 (228)
T ss_pred ---hhcccCCCCcEecHHHHHHHHHHHHhcccCeEEEC-CCC---------CH---HHHHHHHHcCCCEEEEchHHhCCC
Confidence 777766653222 2233322222222 222222 111 11 246678889999999854333345
Q ss_pred CHHHHHHHHHHHHHH
Q 008112 423 FPLKAVKVMHTVSLR 437 (577)
Q Consensus 423 yP~eaV~~m~~I~~~ 437 (577)
.|.++++.+.+..++
T Consensus 209 d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 209 DRKQAIELLRESVQK 223 (228)
T ss_pred CHHHHHHHHHHHHHH
Confidence 699998888876554
No 63
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.98 E-value=7.6 Score=40.34 Aligned_cols=121 Identities=20% Similarity=0.260 Sum_probs=70.6
Q ss_pred HHHHHhcCCCEEEEc------------CCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-----cCEEE
Q 008112 282 IKFGVDNKVDFYAVS------------FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGAM 344 (577)
Q Consensus 282 I~~al~~gvD~I~~S------------fV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-----sDGIm 344 (577)
.+.+.+.|+|+|=+. +-.+++.+.++.+.+.+. .+++|++|| ++ ..++..+|++. +|+|.
T Consensus 108 a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vKl-~~-~~~~~~~~a~~~~~~G~d~i~ 184 (296)
T cd04740 108 AEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TDVPVIVKL-TP-NVTDIVEIARAAEEAGADGLT 184 (296)
T ss_pred HHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cCCCEEEEe-CC-CchhHHHHHHHHHHcCCCEEE
Confidence 345556789998663 346677777776666543 268899998 32 23345555542 78876
Q ss_pred Ec-----CC-CccC-----------CCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHh
Q 008112 345 VA-----RG-DLGA-----------ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVRE 407 (577)
Q Consensus 345 Ia-----RG-DLg~-----------elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~ 407 (577)
+- +. |+.. --|....+...+.+-...+..++|+|....+- + ..|+..++..
T Consensus 185 ~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~---------~---~~da~~~l~~ 252 (296)
T cd04740 185 LINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIA---------S---GEDALEFLMA 252 (296)
T ss_pred EECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCC---------C---HHHHHHHHHc
Confidence 52 11 2210 01111223333444444445689988755433 2 3568889999
Q ss_pred ccceEEeccc
Q 008112 408 GADAVMLSGE 417 (577)
Q Consensus 408 G~D~imLs~E 417 (577)
|+|+|++..-
T Consensus 253 GAd~V~igra 262 (296)
T cd04740 253 GASAVQVGTA 262 (296)
T ss_pred CCCEEEEchh
Confidence 9999999633
No 64
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=91.85 E-value=3.8 Score=40.73 Aligned_cols=135 Identities=18% Similarity=0.182 Sum_probs=75.3
Q ss_pred CHHHHHHHHhcCCCEEEEc--CCCCH--HHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccC
Q 008112 278 DWDDIKFGVDNKVDFYAVS--FVKDA--QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGA 352 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~S--fV~sa--~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~ 352 (577)
+.+.++.+.+.|+|+|.+- ...++ +++.++.+.+++. ..+.+++-.-|.+ .+...... +|.+.+..+++..
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~t~e---e~~~a~~~G~d~i~~~~~g~t~ 152 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCSTLE---EGLAAQKLGFDFIGTTLSGYTE 152 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCCCHH---HHHHHHHcCCCEEEcCCceeec
Confidence 4567888999999977653 33233 6677777777654 5677776544332 22222222 7888775544422
Q ss_pred CC--CCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHH
Q 008112 353 EL--PIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 430 (577)
Q Consensus 353 el--g~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~ 430 (577)
.- ....-...-+++.. ..++|++.+..+ -|. .|+..+...|+|++++.. ++-+ |.+..+.
T Consensus 153 ~~~~~~~~~~~~i~~i~~---~~~iPvia~GGI---------~t~---~~~~~~l~~GadgV~iGs--ai~~-~~~~~~~ 214 (221)
T PRK01130 153 ETKKPEEPDFALLKELLK---AVGCPVIAEGRI---------NTP---EQAKKALELGAHAVVVGG--AITR-PEEITKW 214 (221)
T ss_pred CCCCCCCcCHHHHHHHHH---hCCCCEEEECCC---------CCH---HHHHHHHHCCCCEEEEch--HhcC-CHHHHHH
Confidence 11 11111222222222 237999875432 222 456678889999999973 3333 4455555
Q ss_pred HHHH
Q 008112 431 MHTV 434 (577)
Q Consensus 431 m~~I 434 (577)
+.+.
T Consensus 215 ~~~~ 218 (221)
T PRK01130 215 FVDA 218 (221)
T ss_pred HHHH
Confidence 5443
No 65
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=91.72 E-value=3.5 Score=41.06 Aligned_cols=116 Identities=23% Similarity=0.252 Sum_probs=69.7
Q ss_pred cCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCC
Q 008112 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELP 355 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg 355 (577)
...+.++.+.+.|+|+|.++.-.+.+.++++++ .++.++.++.+. +.+..+.+. +|+|.+....-+-...
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~~~~~~~~~~~~------~~i~~i~~v~~~---~~~~~~~~~gad~i~~~~~~~~G~~~ 138 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFGPPAEVVERLKA------AGIKVIPTVTSV---EEARKAEAAGADALVAQGAEAGGHRG 138 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHH------cCCEEEEeCCCH---HHHHHHHHcCCCEEEEeCcCCCCCCC
Confidence 455777888899999999998766554444443 257788888765 344444444 7888763222111111
Q ss_pred CCcHHHHHHHHHHHHHH-cCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 356 IEEVPLLQEEIIRTCRS-MGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 356 ~e~v~~~qk~Ii~~c~~-aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
... ......+..+++ .++|++.+-.+= + ..|+..++..|+|+|+++
T Consensus 139 ~~~--~~~~~~i~~i~~~~~~Pvi~~GGI~---------~---~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 139 TFD--IGTFALVPEVRDAVDIPVIAAGGIA---------D---GRGIAAALALGADGVQMG 185 (236)
T ss_pred ccc--cCHHHHHHHHHHHhCCCEEEECCCC---------C---HHHHHHHHHcCCcEEEEc
Confidence 111 112233444443 378988754421 2 356778888999999995
No 66
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=91.27 E-value=5.3 Score=38.74 Aligned_cols=134 Identities=16% Similarity=0.135 Sum_probs=78.1
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcH
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEV 359 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v 359 (577)
+.++.+.+.|+|+|.++--.+. +..+..+.+...+ +.+..-+......+.+.++...+|.+.++.-+-|..= +..
T Consensus 71 ~~~~~~~~~g~dgv~vh~~~~~-~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg--~~~ 145 (211)
T cd00429 71 RYIEAFAKAGADIITFHAEATD-HLHRTIQLIKELG--MKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGG--QKF 145 (211)
T ss_pred HHHHHHHHcCCCEEEECccchh-hHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCC--ccc
Confidence 4577778999999988876663 3344444444443 4444444332346667777777898887643322211 111
Q ss_pred HHHHHHHHHHHH------HcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHH
Q 008112 360 PLLQEEIIRTCR------SMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 431 (577)
Q Consensus 360 ~~~qk~Ii~~c~------~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m 431 (577)
+....+.+...+ ....|++++-.+ + . .++..++..|+|++...+.-..-..|.++++.+
T Consensus 146 ~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI----------~--~-env~~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 146 IPEVLEKIRKLRELIPENNLNLLIEVDGGI----------N--L-ETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEEEECCC----------C--H-HHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 111112222222 224788765431 1 1 457788889999999987766667788777754
No 67
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.23 E-value=2.1 Score=48.43 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCHH--HHHHHHHHHHhcCCCceEEE-eecChhhHhhHHHHHHhcCEEEEcCCCccCCCC
Q 008112 279 WDDIKFGVDNKVDFYAVSFVKDAQ--VVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVARGDLGAELP 355 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~sa~--dv~~lr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDGImIaRGDLg~elg 355 (577)
.+-++..++.|+|+|.+.-..-.. .++.++.+-...+.++.|++ -|.|+++.+.+-+ +=+|+|.||.|-=++-..
T Consensus 244 ~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~--aGAd~I~vg~g~Gs~c~t 321 (502)
T PRK07107 244 AERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAE--AGADFVKVGIGGGSICIT 321 (502)
T ss_pred HHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHH--cCCCEEEECCCCCcCccc
Confidence 456666788999999887221111 13333332222333466666 6888887665543 238999996442211111
Q ss_pred CC--cHHHHH----HHHHHHHH----HcC--CceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 356 IE--EVPLLQ----EEIIRTCR----SMG--KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 356 ~e--~v~~~q----k~Ii~~c~----~aG--KPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
-. .+...| .++.++++ +.| +|+|.-.. .- --.|++.|+..|+|++|+.
T Consensus 322 r~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgG---------ir---~~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 322 REQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGG---------IV---YDYHMTLALAMGADFIMLG 381 (502)
T ss_pred ccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCC---------CC---chhHHHHHHHcCCCeeeeC
Confidence 10 111112 23333333 247 78775322 21 2378999999999999984
No 68
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=91.20 E-value=1.1 Score=53.10 Aligned_cols=112 Identities=22% Similarity=0.183 Sum_probs=88.3
Q ss_pred EEEEcCCCCHHHHHHHHHHHH---hcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccC-CCC-----------C
Q 008112 292 FYAVSFVKDAQVVHELKNYLK---SCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGA-ELP-----------I 356 (577)
Q Consensus 292 ~I~~SfV~sa~dv~~lr~~l~---~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~-elg-----------~ 356 (577)
.+++||+++..+...+. ... ..+++.++..+||.+.++-..++|++..|++=+|-.||.- .++ .
T Consensus 597 ~~mip~~~~~~e~~~~~-~~~~~~~~~~~~~~~~m~e~P~~~~~~~e~~~~~d~~S~gtndltq~tlg~~rd~~~~~~~~ 675 (740)
T COG0574 597 EIMIPFVRTEEEREKVI-ILEEGLKRGKNYKVGQMIELPSAALLADEIAEYFDGFSIGSNDLTQLTLGLDRDSELFDERD 675 (740)
T ss_pred EEEccccccHHHHHHHH-HHhhhhcccceEEEEEEeecchHHhhhHhHHhhcccceecccccccceeeeecccccccccc
Confidence 58899999999998888 443 1123388999999999999999999999999999999742 222 2
Q ss_pred CcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 357 EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 357 e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
+.+-.+-+..+..|+..++.++++.|.-+- |.- +.-++..|.|+|+++
T Consensus 676 ~~v~~li~~a~~~~~~~~~~~~icG~~~~~------p~~-----a~~~~e~Gi~~Vs~n 723 (740)
T COG0574 676 PAVLKLIIIAIKAADSGGLLVGICGQAPSD------PHG-----AIFLVELGIDSVSLN 723 (740)
T ss_pred ccHHHHHHHHHhcccccCcEEEEeccCCCC------cHH-----HHHHHHcCCCeEecC
Confidence 367788889999999999999998884421 333 335889999999976
No 69
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=91.16 E-value=5.8 Score=40.06 Aligned_cols=145 Identities=11% Similarity=0.091 Sum_probs=95.3
Q ss_pred CCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccC
Q 008112 273 SITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGA 352 (577)
Q Consensus 273 ~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~ 352 (577)
-+.+.=...+..-.+.|+|+|.+- ++...++.++-+++++.|.+..+..+=+| -++.+..++..+|.|++ +++
T Consensus 65 LMv~~p~~~i~~~~~~gad~i~~H-~Ea~~~~~~~l~~ik~~g~k~GlalnP~T--p~~~i~~~l~~~D~vlv----MtV 137 (220)
T PRK08883 65 LMVKPVDRIIPDFAKAGASMITFH-VEASEHVDRTLQLIKEHGCQAGVVLNPAT--PLHHLEYIMDKVDLILL----MSV 137 (220)
T ss_pred eccCCHHHHHHHHHHhCCCEEEEc-ccCcccHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHhCCeEEE----EEe
Confidence 344333445666678999988754 57667888888889999999999888888 57899999999999988 455
Q ss_pred CCCCC---cHHHHHHHHHHH---HHHcC--CceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCH
Q 008112 353 ELPIE---EVPLLQEEIIRT---CRSMG--KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 424 (577)
Q Consensus 353 elg~e---~v~~~qk~Ii~~---c~~aG--KPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP 424 (577)
+-|.. -++...++|-+. ..++| .|+.+.-.+ +. ..+...+..|+|++.+.+--...+-|
T Consensus 138 ~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI----------~~---eni~~l~~aGAd~vVvGSaIf~~~d~ 204 (220)
T PRK08883 138 NPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGV----------KV---DNIREIAEAGADMFVAGSAIFGQPDY 204 (220)
T ss_pred cCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCC----------CH---HHHHHHHHcCCCEEEEeHHHhCCCCH
Confidence 55443 233333333322 22233 565443221 22 24667788999999886432223468
Q ss_pred HHHHHHHHHHHHH
Q 008112 425 LKAVKVMHTVSLR 437 (577)
Q Consensus 425 ~eaV~~m~~I~~~ 437 (577)
.++++.++....+
T Consensus 205 ~~~i~~l~~~~~~ 217 (220)
T PRK08883 205 KAVIDEMRAELAK 217 (220)
T ss_pred HHHHHHHHHHHHh
Confidence 8999888876543
No 70
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=91.15 E-value=8.3 Score=37.36 Aligned_cols=131 Identities=15% Similarity=0.163 Sum_probs=74.5
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceE-EEeecChhhHhhHHHHHH-hcCEEEEcCCCccCCCCCC
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHV-IVKIESADSIPNLHSIIT-ASDGAMVARGDLGAELPIE 357 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~I-iaKIEt~~gv~NldeIl~-~sDGImIaRGDLg~elg~e 357 (577)
..++.+.+.|+|+|.++.-...+.+.++.+++++.|..+.+ +..-.|++-+. .+.. -+|.+.+.++--+-..+..
T Consensus 68 ~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~---~~~~~~~d~v~~~~~~~~~~~~~~ 144 (202)
T cd04726 68 LEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRA---KLLKLGVDIVILHRGIDAQAAGGW 144 (202)
T ss_pred HHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHH---HHHHCCCCEEEEcCcccccccCCC
Confidence 35577889999999998876666778888888765543322 23445544332 2444 4899888654222222111
Q ss_pred cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHH
Q 008112 358 EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVK 429 (577)
Q Consensus 358 ~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~ 429 (577)
.....-+++. +....|+.+. .-. + ..++..+...|+|++.+.+--..-.-|.++++
T Consensus 145 ~~~~~i~~~~---~~~~~~i~~~-GGI---------~---~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 145 WPEDDLKKVK---KLLGVKVAVA-GGI---------T---PDTLPEFKKAGADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred CCHHHHHHHH---hhcCCCEEEE-CCc---------C---HHHHHHHHhcCCCEEEEeehhcCCCCHHHHHh
Confidence 2122222222 2256776653 222 2 13577888999999998643322334655554
No 71
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=90.87 E-value=2.7 Score=44.97 Aligned_cols=126 Identities=17% Similarity=0.282 Sum_probs=75.5
Q ss_pred CCccCHHHHHHHHhcC--CCEEEEcC--CCCHHHHHHHHHHHHhcCCCceEEEe-ecChhhHhhHHHHHHhcCEEEEcC-
Q 008112 274 ITEKDWDDIKFGVDNK--VDFYAVSF--VKDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITASDGAMVAR- 347 (577)
Q Consensus 274 ltekD~~dI~~al~~g--vD~I~~Sf--V~sa~dv~~lr~~l~~~~~~i~IiaK-IEt~~gv~NldeIl~~sDGImIaR- 347 (577)
.+++|.+.+..-++.| +|+|.+-- =.|...++.++. +.+.-+.+.+|++ +-|.+....+.+ .=+|+|.|+=
T Consensus 91 ~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~-i~~~~p~~~vi~GnV~t~e~a~~l~~--aGad~I~V~~G 167 (321)
T TIGR01306 91 VKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKH-IKTHLPDSFVIAGNVGTPEAVRELEN--AGADATKVGIG 167 (321)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHH-HHHhCCCCEEEEecCCCHHHHHHHHH--cCcCEEEECCC
Confidence 3678888888888888 69887643 223433334433 3333355778888 988777665543 2389999883
Q ss_pred -CCc---cCCCCCCcHHHHH-HHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 348 -GDL---GAELPIEEVPLLQ-EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 348 -GDL---g~elg~e~v~~~q-k~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
|=- ..+.+.. ++..| ..|.+.+.+..+|+|.-..+- --.|++.|+..|+|++|+.
T Consensus 168 ~G~~~~tr~~~g~g-~~~~~l~ai~ev~~a~~~pVIadGGIr------------~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 168 PGKVCITKIKTGFG-TGGWQLAALRWCAKAARKPIIADGGIR------------THGDIAKSIRFGASMVMIG 227 (321)
T ss_pred CCccccceeeeccC-CCchHHHHHHHHHHhcCCeEEEECCcC------------cHHHHHHHHHcCCCEEeec
Confidence 221 0111111 11112 234444445578877543322 2378999999999999985
No 72
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=90.41 E-value=4.4 Score=43.38 Aligned_cols=126 Identities=18% Similarity=0.293 Sum_probs=74.6
Q ss_pred CccCHHHHHHHHhcCC--CEEEEcCC-CCHHHHHHHHHHHHhcCCCceEEEe-ecChhhHhhHHHHHHhcCEEEEcCCCc
Q 008112 275 TEKDWDDIKFGVDNKV--DFYAVSFV-KDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITASDGAMVARGDL 350 (577)
Q Consensus 275 tekD~~dI~~al~~gv--D~I~~SfV-~sa~dv~~lr~~l~~~~~~i~IiaK-IEt~~gv~NldeIl~~sDGImIaRGDL 350 (577)
++++.+-+...++.|+ |+|++--. -.-+.+.++.+.+.+.-.+..||++ +-|.+...++.+ .=+|++.+|=|.=
T Consensus 95 ~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg~~~G 172 (326)
T PRK05458 95 KDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN--AGADATKVGIGPG 172 (326)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH--cCcCEEEECCCCC
Confidence 4566677777788855 99988211 1223344444445554466889997 998887766654 2389999872211
Q ss_pred cC--C---CCCCcHHHHHHHHHHHH-HHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 351 GA--E---LPIEEVPLLQEEIIRTC-RSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 351 g~--e---lg~e~v~~~qk~Ii~~c-~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
.. + .+. ..+.+|-..+..| +...+|+|-...+- +. .|++.|+..|+|++|+.
T Consensus 173 ~~~~t~~~~g~-~~~~w~l~ai~~~~~~~~ipVIAdGGI~---------~~---~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 173 KVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIADGGIR---------TH---GDIAKSIRFGATMVMIG 230 (326)
T ss_pred cccccccccCC-CCCccHHHHHHHHHHHcCCCEEEeCCCC---------CH---HHHHHHHHhCCCEEEec
Confidence 11 1 111 1222232223333 33578877544333 33 67999999999999985
No 73
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=89.92 E-value=11 Score=38.30 Aligned_cols=138 Identities=12% Similarity=0.148 Sum_probs=91.2
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCC--
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIE-- 357 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e-- 357 (577)
..+..-.+.|+|.|.+-+ ++..++.++-+++++.|.+..+..+-+| -++.+..++..+|.|++ ++++-|+.
T Consensus 76 ~~i~~~~~~gad~I~~H~-Ea~~~~~~~l~~Ir~~g~k~GlalnP~T--~~~~i~~~l~~vD~Vlv----MtV~PGf~GQ 148 (223)
T PRK08745 76 RIVPDFADAGATTISFHP-EASRHVHRTIQLIKSHGCQAGLVLNPAT--PVDILDWVLPELDLVLV----MSVNPGFGGQ 148 (223)
T ss_pred HHHHHHHHhCCCEEEEcc-cCcccHHHHHHHHHHCCCceeEEeCCCC--CHHHHHHHHhhcCEEEE----EEECCCCCCc
Confidence 445556778999887654 6556788888889999999999999988 57899999999999998 66666654
Q ss_pred -cHHHHHHHHHH---HHHHcCCce--EEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHH
Q 008112 358 -EVPLLQEEIIR---TCRSMGKAV--IVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 431 (577)
Q Consensus 358 -~v~~~qk~Ii~---~c~~aGKPv--i~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m 431 (577)
-.+..-++|-+ ...+++..+ -+... =+. ..+......|+|.+++.+--....-|.++++.|
T Consensus 149 ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGG----------I~~---eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~l 215 (223)
T PRK08745 149 AFIPSALDKLRAIRKKIDALGKPIRLEIDGG----------VKA---DNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQM 215 (223)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCeeEEEECC----------CCH---HHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHH
Confidence 23333333322 223345443 22221 111 235567789999998853211123589999998
Q ss_pred HHHHHH
Q 008112 432 HTVSLR 437 (577)
Q Consensus 432 ~~I~~~ 437 (577)
++...+
T Consensus 216 r~~~~~ 221 (223)
T PRK08745 216 RAAVAA 221 (223)
T ss_pred HHHHHh
Confidence 877544
No 74
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=89.89 E-value=6.2 Score=40.44 Aligned_cols=65 Identities=17% Similarity=0.355 Sum_probs=43.9
Q ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEE--eec--C-hhhHhhHHHHHHh-cCEEEEcCCCcc
Q 008112 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIV--KIE--S-ADSIPNLHSIITA-SDGAMVARGDLG 351 (577)
Q Consensus 282 I~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~Iia--KIE--t-~~gv~NldeIl~~-sDGImIaRGDLg 351 (577)
.+.+.+.|+|||..||.. +++.+++..... .++|++ -|= | .++++|++++++. ++|+-++|.=+.
T Consensus 162 ~~~a~~~GADyikt~~~~---~~~~l~~~~~~~--~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 162 ARLGAELGADIVKTPYTG---DIDSFRDVVKGC--PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred HHHHHHHCCCEEeccCCC---CHHHHHHHHHhC--CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 366778999999999875 445555544332 344444 343 2 3457899999988 899999876553
No 75
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=89.79 E-value=4.6 Score=43.60 Aligned_cols=201 Identities=19% Similarity=0.281 Sum_probs=121.5
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHHHHHHH----------------------HHHhcCCCceEEEeecChhhHhhHHHH
Q 008112 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKN----------------------YLKSCGADIHVIVKIESADSIPNLHSI 336 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~----------------------~l~~~~~~i~IiaKIEt~~gv~NldeI 336 (577)
++.+..|++.|+|+|.++- .+++.++++-+ .+...+.++.....|.+.+-.+.+-+.
T Consensus 15 k~~vt~AlEsGvd~vv~~~-~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~i~~~~~~~~a~~~ 93 (354)
T PF01959_consen 15 KEVVTAALESGVDGVVVDD-EDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVEITDKEDEEEACEL 93 (354)
T ss_pred HHHHHHHHHcCCCEEEECH-hHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEEECCHHHHHHHHHH
Confidence 7788899999999998874 22333332211 112234556688999999999999999
Q ss_pred HHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEecc
Q 008112 337 ITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG 416 (577)
Q Consensus 337 l~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ 416 (577)
....|.+++--.|-. -+|+|. +|++....+.-++.. .-+-.|..-...++..|+|+|+|..
T Consensus 94 ~~~~~~~iv~~~Dw~-iIPlEn-------liA~~~~~~~~i~a~-----------v~~~~eA~~~~~~LE~G~dGVll~~ 154 (354)
T PF01959_consen 94 AKRADYVIVEFRDWT-IIPLEN-------LIAALQGSSTKIIAV-----------VADAEEARVALEVLEKGVDGVLLDP 154 (354)
T ss_pred hccCCeEEEEcCCCc-EecHHH-------HHHHhcCCCceEEEE-----------eCCHHHHHHHHHHHhcCCCeEEECC
Confidence 888888888655543 245544 344443344444432 3466777778899999999999986
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhc-cccCC----------------------CCCCC---C-Ccc----c----CCChhH
Q 008112 417 ETAHGKFPLKAVKVMHTVSLRTEA-TITGG----------------------AMPPN---L-GQA----F----KNHMSE 461 (577)
Q Consensus 417 ETa~G~yP~eaV~~m~~I~~~aE~-~~~~~----------------------~~~~~---l-~~~----~----~~~~~~ 461 (577)
+. | ..++.+...+.+.+. .+... .+.+. | ++. + ......
T Consensus 155 ~d-----~-~ei~~~~~~~~~~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~p 228 (354)
T PF01959_consen 155 DD-----P-AEIKALVALLKERSQEKLELVPATVTRVEPVGMGDRVCVDTCSLLRPGEGMLVGSSSSGLFLVHSETHESP 228 (354)
T ss_pred CC-----H-HHHHHHHHHHhhccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCCeEEEcccCceEEEEEeccccCC
Confidence 63 3 455555555555322 11100 00000 0 000 0 000000
Q ss_pred HHHHHHHHHHhhcCc-eEEEEcCC-hHHHHHHHhhCCCCeEEEEcCcHHH
Q 008112 462 MFAYHATMMSNTLGT-SIVVFTRT-GFMAILLSHYRPSGTIFAFTNEKRI 509 (577)
Q Consensus 462 ~ia~~a~~~a~~~~a-aIiV~T~s-G~tA~~is~~RP~~PIIAvT~~~~t 509 (577)
.. ..--++.|| ++=.|+.. |...++||-.+..-.|+++-.+-++
T Consensus 229 Yv----a~RPFRVNAGaVHaYv~~pg~kT~YLSEL~sG~~VlvVd~~G~t 274 (354)
T PF01959_consen 229 YV----ASRPFRVNAGAVHAYVLMPGGKTRYLSELRSGDEVLVVDADGRT 274 (354)
T ss_pred CC----CCCCceEecCcceeEEEcCCCceeehhhhcCCCEEEEEeCCCCE
Confidence 00 001246788 77667766 7788999999999999999987553
No 76
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=89.61 E-value=18 Score=36.86 Aligned_cols=143 Identities=13% Similarity=0.159 Sum_probs=93.7
Q ss_pred HHHHHHHHhcCCCEEEEcCCCC-HHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCC
Q 008112 279 WDDIKFGVDNKVDFYAVSFVKD-AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIE 357 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~s-a~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e 357 (577)
...|..-.+.|+|+|.+-+ +. ..++.++-+++++.|.+..+..+-.|+ ++.++.++..+|.|+| ++++-|+.
T Consensus 72 ~~~i~~~~~aGad~it~H~-Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~--~~~l~~~l~~vD~VLv----MsV~PGf~ 144 (229)
T PRK09722 72 QDYIDQLADAGADFITLHP-ETINGQAFRLIDEIRRAGMKVGLVLNPETP--VESIKYYIHLLDKITV----MTVDPGFA 144 (229)
T ss_pred HHHHHHHHHcCCCEEEECc-cCCcchHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHHhcCEEEE----EEEcCCCc
Confidence 4556666788999987654 53 357777888899999999999999984 6899999999999998 66666654
Q ss_pred ---cHHHHHHHHHHH---HHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCC--CCHHHHHH
Q 008112 358 ---EVPLLQEEIIRT---CRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHG--KFPLKAVK 429 (577)
Q Consensus 358 ---~v~~~qk~Ii~~---c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G--~yP~eaV~ 429 (577)
-.+..-++|-+. ..++|..+.+. +... =+. .-+......|+|.+.+.+---.| +-|.++++
T Consensus 145 GQ~fi~~~l~KI~~lr~~~~~~~~~~~Ie-------VDGG-I~~---~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~ 213 (229)
T PRK09722 145 GQPFIPEMLDKIAELKALRERNGLEYLIE-------VDGS-CNQ---KTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWD 213 (229)
T ss_pred chhccHHHHHHHHHHHHHHHhcCCCeEEE-------EECC-CCH---HHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHH
Confidence 233333333322 23445443221 1111 111 12456778999999885321223 34889999
Q ss_pred HHHHHHHHHh
Q 008112 430 VMHTVSLRTE 439 (577)
Q Consensus 430 ~m~~I~~~aE 439 (577)
.|+....++.
T Consensus 214 ~l~~~~~~~~ 223 (229)
T PRK09722 214 IMTAQIEAAT 223 (229)
T ss_pred HHHHHHHHhh
Confidence 9988766553
No 77
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=89.51 E-value=5.1 Score=43.07 Aligned_cols=204 Identities=15% Similarity=0.202 Sum_probs=123.3
Q ss_pred ccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHH----------------HhcCCCceEEEeecChhhHhhHHHHHHh
Q 008112 276 EKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYL----------------KSCGADIHVIVKIESADSIPNLHSIITA 339 (577)
Q Consensus 276 ekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l----------------~~~~~~i~IiaKIEt~~gv~NldeIl~~ 339 (577)
+.+++.+..|++.|+|+|.++- +|+..++++- ...+.....+.+|.+.+-.+.+.+....
T Consensus 13 ~~~k~~vt~AlEsGv~~vvv~~----~~~~~v~~lg~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~e~~a~~~~~~ 88 (344)
T PRK02290 13 EERKEVVTTALESGVDGVVVDE----EDVERVRELGRIKVAADDPDADAVVISGSAGEDGAYVEIRDKEDEEFAAELAKE 88 (344)
T ss_pred hhHHHHHHHHHHcCCCEEEECH----HHhHHHHhhCCeeEEEEcCCcchhhhcccCCceEEEEEECCHHHHHHHHHhhcc
Confidence 6788899999999999998763 5655555431 1223456788899999999999999988
Q ss_pred cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccC
Q 008112 340 SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETA 419 (577)
Q Consensus 340 sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa 419 (577)
.|.++|--.|. --+|+|. +|++..+.++ ++.. .-+..|..-....+..|+|+|+|..+.
T Consensus 89 ~~~viv~~~dW-~iIPlEn-------lIA~~~~~~~-l~a~-----------v~~~~eA~~a~~~LE~G~dGVvl~~~d- 147 (344)
T PRK02290 89 VDYVIVEGRDW-TIIPLEN-------LIADLGQSGK-IIAG-----------VADAEEAKLALEILEKGVDGVLLDPDD- 147 (344)
T ss_pred CCEEEEECCCC-cEecHHH-------HHhhhcCCce-EEEE-----------eCCHHHHHHHHHHhccCCCeEEECCCC-
Confidence 89888854443 2245444 4444423333 3332 235577777888999999999998653
Q ss_pred CCCCHHHHHHHHHHHHHHHhccccCC----------------------CCCCCCCccc-CCChhHHHHHHHH-------H
Q 008112 420 HGKFPLKAVKVMHTVSLRTEATITGG----------------------AMPPNLGQAF-KNHMSEMFAYHAT-------M 469 (577)
Q Consensus 420 ~G~yP~eaV~~m~~I~~~aE~~~~~~----------------------~~~~~l~~~~-~~~~~~~ia~~a~-------~ 469 (577)
| ..++-+...+.+.-..+... .+.+.-+-.. ..+..-++..+-+ .
T Consensus 148 ----~-~ei~~~~~~~~~~~~~l~L~~a~Vt~V~~vG~GdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~ 222 (344)
T PRK02290 148 ----P-NEIKAIVALIEEAREKLELVPATVTRVEPVGMGDRVCVDTCSLMEEGEGMLVGSSSRGMFLVHAETEENPYVAS 222 (344)
T ss_pred ----H-HHHHHHHHHHhccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCceEEEcccCCcEEEEecccccCCCccC
Confidence 3 44555555554411111000 0000000000 0000000000000 1
Q ss_pred HHhhcCc-eEEEEcCC-hHHHHHHHhhCCCCeEEEEcCcHHH
Q 008112 470 MSNTLGT-SIVVFTRT-GFMAILLSHYRPSGTIFAFTNEKRI 509 (577)
Q Consensus 470 ~a~~~~a-aIiV~T~s-G~tA~~is~~RP~~PIIAvT~~~~t 509 (577)
--++.|| ++=.|+.. |..+++||-.+..-.|+++-.+-++
T Consensus 223 RPFRVNAGaVhaYv~~pgg~T~YLsEL~sG~eVlvVd~~G~t 264 (344)
T PRK02290 223 RPFRVNAGAVHAYVRVPGDKTRYLSELRSGDEVLVVDADGNT 264 (344)
T ss_pred CCeeEecCcceeEEEcCCCcchhhHhhcCCCEEEEEeCCCCE
Confidence 2246788 77777776 7788999999999999999987554
No 78
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=89.46 E-value=7.2 Score=36.39 Aligned_cols=116 Identities=21% Similarity=0.221 Sum_probs=69.3
Q ss_pred HHHHHhcCCCEEEEcCCCC------HHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCC
Q 008112 282 IKFGVDNKVDFYAVSFVKD------AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAEL 354 (577)
Q Consensus 282 I~~al~~gvD~I~~SfV~s------a~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~el 354 (577)
.+++.+.|+|+|.++.-.- .+.++++++.+ .+..++.++......+... +.+. +|.+.+..+.-+-..
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~~ 151 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAV----PDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGGG 151 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc----CCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCCC
Confidence 4678889999999987763 33444444433 4678899987655433211 2222 799999876554322
Q ss_pred CCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 355 PIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 355 g~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
.. ..+.....+....+..++|++.+..+- +. .++..++..|+|++++.
T Consensus 152 ~~-~~~~~~~~~~~~~~~~~~pi~~~GGi~---------~~---~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 152 RD-AVPIADLLLILAKRGSKVPVIAGGGIN---------DP---EDAAEALALGADGVIVG 199 (200)
T ss_pred cc-CchhHHHHHHHHHhcCCCCEEEECCCC---------CH---HHHHHHHHhCCCEEEec
Confidence 21 111111222233456789998866532 22 45667777899999975
No 79
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=89.46 E-value=6 Score=44.51 Aligned_cols=124 Identities=19% Similarity=0.195 Sum_probs=79.7
Q ss_pred CCccCHHHHHHHHhcCCCEEEE--cCCCCHHHHHHHHHHHHhcCCCceEEEe-ecChhhHhhHHHHHHhcCEEEEcCC--
Q 008112 274 ITEKDWDDIKFGVDNKVDFYAV--SFVKDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITASDGAMVARG-- 348 (577)
Q Consensus 274 ltekD~~dI~~al~~gvD~I~~--SfV~sa~dv~~lr~~l~~~~~~i~IiaK-IEt~~gv~NldeIl~~sDGImIaRG-- 348 (577)
+.+.+.+-++.-++.|+|.|++ +.-++ +.+.++.+.++....++.||+= +-|.++..++.+. =+|+|-||=|
T Consensus 222 ~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~-~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~--G~d~i~vg~g~G 298 (475)
T TIGR01303 222 INGDVGGKAKALLDAGVDVLVIDTAHGHQ-VKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEA--GANIIKVGVGPG 298 (475)
T ss_pred eCccHHHHHHHHHHhCCCEEEEeCCCCCc-HHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHh--CCCEEEECCcCC
Confidence 3556667777778899999875 44333 4555555566665567889986 7777776666542 3898876622
Q ss_pred -------CccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 349 -------DLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 349 -------DLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
-.++-.| -...--+..+.++++|+|+|--- ...+. .|++.|+..|+|++|+.
T Consensus 299 s~~ttr~~~~~g~~---~~~a~~~~~~~~~~~~~~viadG---------gi~~~---~di~kala~GA~~vm~g 357 (475)
T TIGR01303 299 AMCTTRMMTGVGRP---QFSAVLECAAEARKLGGHVWADG---------GVRHP---RDVALALAAGASNVMVG 357 (475)
T ss_pred ccccCccccCCCCc---hHHHHHHHHHHHHHcCCcEEEeC---------CCCCH---HHHHHHHHcCCCEEeec
Confidence 1111111 12223355566688899987532 22233 78999999999999995
No 80
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=89.45 E-value=7.4 Score=40.77 Aligned_cols=124 Identities=19% Similarity=0.291 Sum_probs=75.3
Q ss_pred cCHHHH-HHHHhcCCCEEEE----cCC-----------CCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-
Q 008112 277 KDWDDI-KFGVDNKVDFYAV----SFV-----------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA- 339 (577)
Q Consensus 277 kD~~dI-~~al~~gvD~I~~----SfV-----------~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~- 339 (577)
.|+.+. +.+.+.|+|+|-+ |.. ++++.+.++.+.+.+. .++++++||- + .+.++.++++.
T Consensus 113 ~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~Pv~vKl~-~-~~~~~~~~a~~~ 189 (299)
T cd02940 113 EDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA-VKIPVIAKLT-P-NITDIREIARAA 189 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh-cCCCeEEECC-C-CchhHHHHHHHH
Confidence 343433 3333458888755 333 5566777776666543 3688999994 2 44566666663
Q ss_pred ----cCEEEEc-----CCCcc---------C--------CCCCCcHHHHHHHHHHHHHHc--CCceEEEehhhHhhhcCC
Q 008112 340 ----SDGAMVA-----RGDLG---------A--------ELPIEEVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHP 391 (577)
Q Consensus 340 ----sDGImIa-----RGDLg---------~--------elg~e~v~~~qk~Ii~~c~~a--GKPvi~ATq~LeSM~~~~ 391 (577)
+|||.+. |-++- + =-|....+...+.+-+..+.. ..|+|-...+.
T Consensus 190 ~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~------- 262 (299)
T cd02940 190 KEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIE------- 262 (299)
T ss_pred HHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCC-------
Confidence 7888742 11110 0 011113455666666666666 68887655443
Q ss_pred CCChHhHHHHHHHHHhccceEEec
Q 008112 392 TPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 392 ~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
...|+..++..|+|+||+.
T Consensus 263 -----~~~da~~~l~aGA~~V~i~ 281 (299)
T cd02940 263 -----SWEDAAEFLLLGASVVQVC 281 (299)
T ss_pred -----CHHHHHHHHHcCCChheEc
Confidence 2467899999999999996
No 81
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=89.03 E-value=6.8 Score=44.04 Aligned_cols=124 Identities=21% Similarity=0.187 Sum_probs=75.5
Q ss_pred cCHHHHHHHHhcCCCEEEEc--CCCCHHHHHHHHHHHHhcCCCceEE-EeecChhhHhhHHHHHHhcCEEEEcCCCccCC
Q 008112 277 KDWDDIKFGVDNKVDFYAVS--FVKDAQVVHELKNYLKSCGADIHVI-VKIESADSIPNLHSIITASDGAMVARGDLGAE 353 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~S--fV~sa~dv~~lr~~l~~~~~~i~Ii-aKIEt~~gv~NldeIl~~sDGImIaRGDLg~e 353 (577)
.+.+.++..++.|+|.+.+- .-++ +.+....+.+.....+..|+ .-+-|.+...++-+. =+|+|-+|=|--+.+
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~g~~-~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a--Gad~i~vg~g~gs~~ 304 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAHGHS-EGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA--GADAVKVGIGPGSIC 304 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCCCcc-hhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc--CCCEEEECCCCCccc
Confidence 34677777889999988653 2222 34444445555444455644 568887776666542 389998763322221
Q ss_pred CCCC--c----HHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 354 LPIE--E----VPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 354 lg~e--~----v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
.... . -..+-.++.+.|++.++|+|.-.. .-+. .|++.|+..|+|++|+.
T Consensus 305 ~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGG---------i~~~---~di~kAla~GA~~v~~G 360 (486)
T PRK05567 305 TTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGG---------IRYS---GDIAKALAAGASAVMLG 360 (486)
T ss_pred cceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCC---------CCCH---HHHHHHHHhCCCEEEEC
Confidence 1111 1 123334556667778999886333 2333 67999999999999984
No 82
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=88.97 E-value=20 Score=39.67 Aligned_cols=207 Identities=19% Similarity=0.211 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhcCCCeeEEEeecCCCeeEEeecCCcEEEcCCCEEEEEEecCCCCceEEec--cccccccccCCCCEEE
Q 008112 151 KVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPITLTSGQEFTFTIQRGVGSAECVSV--NYDDFVNDVEVGDMLL 228 (577)
Q Consensus 151 ~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~~i~L~~G~~v~lt~~~~~~~~~~i~v--~~~~~~~~v~~Gd~I~ 228 (577)
++...|+.+-+..- .++-|-.++.+-+.+ ..-.++|+..+....-.++.. ++..+-..++.|+.|+
T Consensus 10 el~~~ik~~le~~~-~~v~v~gEis~~~~~-----------~sGH~Yf~Lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~ 77 (438)
T PRK00286 10 ELNRYVKSLLERDL-GQVWVRGEISNFTRH-----------SSGHWYFTLKDEIAQIRCVMFKGSARRLKFKPEEGMKVL 77 (438)
T ss_pred HHHHHHHHHHHhhC-CcEEEEEEeCCCeeC-----------CCCeEEEEEEcCCcEEEEEEEcChhhcCCCCCCCCCEEE
Confidence 44444555443321 355665555544433 222456666544333333332 2344555678999887
Q ss_pred Ee--------CCeEEEEEEEEeCCeEEEEEeeCcEec----------cCceeeeCCCCCCCCCCCccCHHHHHHHHhcCC
Q 008112 229 VD--------GGMMSLLVKSKTEDSVKCEVVDGGELK----------SRRHLNVRGKSATLPSITEKDWDDIKFGVDNKV 290 (577)
Q Consensus 229 id--------DG~i~l~V~~v~~~~v~~~v~~gG~l~----------s~Kginlp~~~~~lp~ltekD~~dI~~al~~gv 290 (577)
+. .|.++|.|.++++..+ |.|. ..+|+-=|....++|.++.+
T Consensus 78 v~g~~~~y~~~g~~ql~v~~i~~~g~-------G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~------------- 137 (438)
T PRK00286 78 VRGKVSLYEPRGDYQLIVEEIEPAGI-------GALAAAFEQLKEKLAAEGLFDPERKKPLPFFPKR------------- 137 (438)
T ss_pred EEEEEEEECCCCCEEEEEEEeeeCCc-------cHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCCE-------------
Confidence 64 7778888887776542 2221 23455444555566665432
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh--------cCEEEEcCCCccCCCCCCc-HHH
Q 008112 291 DFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--------SDGAMVARGDLGAELPIEE-VPL 361 (577)
Q Consensus 291 D~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~--------sDGImIaRGDLg~elg~e~-v~~ 361 (577)
|++=--.+++-+..+.+.+........+..-==+.+|-....+|++. .|.|+|+||-=+ .|+ ++.
T Consensus 138 --I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS----~eDL~~F 211 (438)
T PRK00286 138 --IGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS----LEDLWAF 211 (438)
T ss_pred --EEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC----HHHhhcc
Confidence 33322356666666666666554433333322233444444555443 399999999321 111 122
Q ss_pred HHHHHHHHHHHcCCceEEE------ehhhHhhhcCCCCCh
Q 008112 362 LQEEIIRTCRSMGKAVIVA------TNMLESMIVHPTPTR 395 (577)
Q Consensus 362 ~qk~Ii~~c~~aGKPvi~A------Tq~LeSM~~~~~Ptr 395 (577)
=...++++..+...|||.| +-++|-....-.||.
T Consensus 212 n~e~v~~ai~~~~~Pvis~IGHE~D~tl~D~vAd~ra~TP 251 (438)
T PRK00286 212 NDEAVARAIAASRIPVISAVGHETDFTIADFVADLRAPTP 251 (438)
T ss_pred CcHHHHHHHHcCCCCEEEeccCCCCccHHHHhhhccCCCh
Confidence 2356777788889999987 335555444333333
No 83
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=88.85 E-value=19 Score=35.28 Aligned_cols=139 Identities=15% Similarity=0.135 Sum_probs=76.7
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCC-C-C
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELP-I-E 357 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg-~-e 357 (577)
+.+..+.+.|+|+|.++.-.+. +..+..+.+...+. .+..-+......+.+.++...+|.+.+..-+-|..-. + .
T Consensus 75 ~~i~~~~~~g~d~v~vh~~~~~-~~~~~~~~~~~~~~--~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~ 151 (220)
T PRK05581 75 RYVPDFAKAGADIITFHVEASE-HIHRLLQLIKSAGI--KAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIP 151 (220)
T ss_pred HHHHHHHHcCCCEEEEeeccch-hHHHHHHHHHHcCC--EEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccH
Confidence 3556667899999988887663 44444444544443 4444443233467778888789988776433222211 1 0
Q ss_pred cHHHHHHHHHHHHHHcCC-ceE-EEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHH
Q 008112 358 EVPLLQEEIIRTCRSMGK-AVI-VATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 434 (577)
Q Consensus 358 ~v~~~qk~Ii~~c~~aGK-Pvi-~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I 434 (577)
......+++-..+..++. |.+ ++- -+ +. .++..+...|+|++.+.+.-..-.-|.++++.+.++
T Consensus 152 ~~~~~i~~~~~~~~~~~~~~~i~v~G-GI---------~~---~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~ 217 (220)
T PRK05581 152 EVLEKIRELRKLIDERGLDILIEVDG-GI---------NA---DNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAE 217 (220)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEC-CC---------CH---HHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence 111122223233333333 333 332 22 22 246666668999999875544445688888877665
No 84
>PLN02334 ribulose-phosphate 3-epimerase
Probab=88.76 E-value=15 Score=36.95 Aligned_cols=152 Identities=13% Similarity=0.154 Sum_probs=84.7
Q ss_pred CCCCCCCccCHHHHHHHHhcCCCEEEEcCCC-CHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh--cCEEEE
Q 008112 269 ATLPSITEKDWDDIKFGVDNKVDFYAVSFVK-DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--SDGAMV 345 (577)
Q Consensus 269 ~~lp~ltekD~~dI~~al~~gvD~I~~SfV~-sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~--sDGImI 345 (577)
++.+.+...=...+..+.+.|+|+|.+..-+ ..+...+..+.+...|..+.+...=.| -++.+.+++.. +|.|.+
T Consensus 68 ~~vhlmv~~p~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t--~~~~~~~~~~~~~~Dyi~~ 145 (229)
T PLN02334 68 LDCHLMVTNPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGT--PVEAVEPVVEKGLVDMVLV 145 (229)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHhccCCCEEEE
Confidence 3444444322234566688999999776653 223443444444445554544443223 45667788888 999988
Q ss_pred cCCCccCCCCCCcH-HHHHHHHHHHHHHc--CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCC
Q 008112 346 ARGDLGAELPIEEV-PLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 422 (577)
Q Consensus 346 aRGDLg~elg~e~v-~~~qk~Ii~~c~~a--GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~ 422 (577)
+.-.=|..- +.. +....++ +..++. ++|+.+...+ +. ..+......|+|++.+.+--.--+
T Consensus 146 ~~v~pg~~~--~~~~~~~~~~i-~~~~~~~~~~~I~a~GGI----------~~---e~i~~l~~aGad~vvvgsai~~~~ 209 (229)
T PLN02334 146 MSVEPGFGG--QSFIPSMMDKV-RALRKKYPELDIEVDGGV----------GP---STIDKAAEAGANVIVAGSAVFGAP 209 (229)
T ss_pred EEEecCCCc--cccCHHHHHHH-HHHHHhCCCCcEEEeCCC----------CH---HHHHHHHHcCCCEEEEChHHhCCC
Confidence 533221111 111 2222222 233332 4665443222 22 246678889999999875543345
Q ss_pred CHHHHHHHHHHHHHHH
Q 008112 423 FPLKAVKVMHTVSLRT 438 (577)
Q Consensus 423 yP~eaV~~m~~I~~~a 438 (577)
.|.++++.+.+..+++
T Consensus 210 d~~~~~~~l~~~~~~~ 225 (229)
T PLN02334 210 DYAEVISGLRASVEKA 225 (229)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 7999999888776654
No 85
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=88.70 E-value=2.6 Score=41.69 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=76.2
Q ss_pred HHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhh----HHHHHHh-----cCEEEEcCCCccCC
Q 008112 283 KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPN----LHSIITA-----SDGAMVARGDLGAE 353 (577)
Q Consensus 283 ~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~N----ldeIl~~-----sDGImIaRGDLg~e 353 (577)
+.+.+.|+|+|.+..--..+.+.++.+.+++.|..+.+..+.++..+++. ++.++.. .||..+.+.
T Consensus 74 ~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~~----- 148 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAPAT----- 148 (215)
T ss_pred HHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEECCC-----
Confidence 55678999999999875566688888888877777777777777666664 3333321 344443211
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHH
Q 008112 354 LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 433 (577)
Q Consensus 354 lg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~ 433 (577)
..+++..+. +..+.++.+.+.-+ +++-.++..++..|+|.+.+..--....-|.++++.|++
T Consensus 149 -~~~~i~~l~-------~~~~~~~~ivdgGI----------~~~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~~ 210 (215)
T PRK13813 149 -RPERVRYIR-------SRLGDELKIISPGI----------GAQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAINE 210 (215)
T ss_pred -cchhHHHHH-------HhcCCCcEEEeCCc----------CCCCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHHH
Confidence 112222221 12222321122211 111112567778899999886433233459999999887
Q ss_pred HHHH
Q 008112 434 VSLR 437 (577)
Q Consensus 434 I~~~ 437 (577)
.+++
T Consensus 211 ~~~~ 214 (215)
T PRK13813 211 EIRG 214 (215)
T ss_pred HHhc
Confidence 6654
No 86
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=88.28 E-value=11 Score=39.00 Aligned_cols=123 Identities=18% Similarity=0.210 Sum_probs=72.1
Q ss_pred HHHHHHHhcCCCEEEEcC----C-------CCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-----cCEE
Q 008112 280 DDIKFGVDNKVDFYAVSF----V-------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGA 343 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~Sf----V-------~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-----sDGI 343 (577)
+..+.+.+.|+|+|-+.+ + ++++.+.++.+.+++. .++.+++|+-.....++..++++. +|+|
T Consensus 115 ~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i 193 (289)
T cd02810 115 ELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA-VDIPLLVKLSPYFDLEDIVELAKAAERAGADGL 193 (289)
T ss_pred HHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc-cCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 444566677999987653 1 3456666666666543 267899998765544455555543 7888
Q ss_pred EEcCCCccC--C------------CCCC---cHHHHHHHHHHHHHHc--CCceEEEehhhHhhhcCCCCChHhHHHHHHH
Q 008112 344 MVARGDLGA--E------------LPIE---EVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIA 404 (577)
Q Consensus 344 mIaRGDLg~--e------------lg~e---~v~~~qk~Ii~~c~~a--GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~na 404 (577)
.+.-+-.+. . -++. -.+...+.+-..++.. ++|+|....+- + ..|+..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~---------~---~~da~~~ 261 (289)
T cd02810 194 TAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGID---------S---GEDVLEM 261 (289)
T ss_pred EEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCC---------C---HHHHHHH
Confidence 875221110 0 0111 1122333344444445 68888655433 2 2568888
Q ss_pred HHhccceEEec
Q 008112 405 VREGADAVMLS 415 (577)
Q Consensus 405 v~~G~D~imLs 415 (577)
+..|+|++|+.
T Consensus 262 l~~GAd~V~vg 272 (289)
T cd02810 262 LMAGASAVQVA 272 (289)
T ss_pred HHcCccHheEc
Confidence 89999999986
No 87
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=88.15 E-value=6 Score=39.34 Aligned_cols=118 Identities=15% Similarity=0.141 Sum_probs=68.4
Q ss_pred CHHHHHHHHhcCCCEEEEc--CCCCH--HHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccC
Q 008112 278 DWDDIKFGVDNKVDFYAVS--FVKDA--QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGA 352 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~S--fV~sa--~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~ 352 (577)
+.+.++.+.+.|+|+|.+- ..+.+ +.+.++.+.+.+.+ ++.+++.+.|.+-. ....+. .|.+.+...++.-
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea---~~a~~~G~d~i~~~~~g~t~ 156 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEA---LNAAKLGFDIIGTTLSGYTE 156 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHH---HHHHHcCCCEEEccCccccc
Confidence 4568888999999987662 22223 26667776676666 77888877665432 222222 7888664322211
Q ss_pred ---CCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 353 ---ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 353 ---elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
......+ ..-+++ ....++|++..-.+- + ..|+..++..|+|++++.
T Consensus 157 ~~~~~~~~~~-~~l~~i---~~~~~ipvia~GGI~---------~---~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 157 ETAKTEDPDF-ELLKEL---RKALGIPVIAEGRIN---------S---PEQAAKALELGADAVVVG 206 (219)
T ss_pred cccCCCCCCH-HHHHHH---HHhcCCCEEEeCCCC---------C---HHHHHHHHHCCCCEEEEc
Confidence 1111111 222222 223379988754432 2 256778888999999985
No 88
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=88.08 E-value=17 Score=35.24 Aligned_cols=134 Identities=13% Similarity=0.135 Sum_probs=77.3
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccC---CCCC
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGA---ELPI 356 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~---elg~ 356 (577)
+.++.+.+.|+|+|.++--.+ ++.....+.++..+.+..+. ++.....+.+.++...+|++.+..-+-|. ..+.
T Consensus 70 ~~~~~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g~~~~~~--~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~ 146 (210)
T TIGR01163 70 RYIEDFAEAGADIITVHPEAS-EHIHRLLQLIKDLGAKAGIV--LNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIP 146 (210)
T ss_pred HHHHHHHHcCCCEEEEccCCc-hhHHHHHHHHHHcCCcEEEE--ECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccH
Confidence 446777799999998876443 44555556666666554443 45444577888888778998875433221 1111
Q ss_pred CcHHHHHHHHHHHHHHc--CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHH
Q 008112 357 EEVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 430 (577)
Q Consensus 357 e~v~~~qk~Ii~~c~~a--GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~ 430 (577)
..+ ..-+++-+..++. ++|+.++..+ +. .++..++..|+|++.+.+.-..-.-|.++++.
T Consensus 147 ~~~-~~i~~i~~~~~~~~~~~~i~v~GGI----------~~---env~~l~~~gad~iivgsai~~~~d~~~~~~~ 208 (210)
T TIGR01163 147 DTL-EKIREVRKMIDENGLSILIEVDGGV----------ND---DNARELAEAGADILVAGSAIFGADDYKEVIRS 208 (210)
T ss_pred HHH-HHHHHHHHHHHhcCCCceEEEECCc----------CH---HHHHHHHHcCCCEEEEChHHhCCCCHHHHHHH
Confidence 111 1112233333333 3577655421 21 44777889999999987554333446666653
No 89
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=87.91 E-value=15 Score=34.80 Aligned_cols=119 Identities=20% Similarity=0.180 Sum_probs=69.5
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCC-CceEEEeecChh-------hHhhHHHHHHh-cCEEEEcCCCc
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA-DIHVIVKIESAD-------SIPNLHSIITA-SDGAMVARGDL 350 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~-~i~IiaKIEt~~-------gv~NldeIl~~-sDGImIaRGDL 350 (577)
+.+++.++.|+|+|.+.- +-++.+++.. +. ++.+++++=... .++..+.-.+. +|++++..- .
T Consensus 17 ~~~~~~~~~gv~gi~~~g----~~i~~~~~~~---~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~-~ 88 (201)
T cd00945 17 KLCDEAIEYGFAAVCVNP----GYVRLAADAL---AGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVIN-I 88 (201)
T ss_pred HHHHHHHHhCCcEEEECH----HHHHHHHHHh---CCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEecc-H
Confidence 344677889999998885 4444444443 34 688999986644 55566665555 899998521 1
Q ss_pred cCCCC--CCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCC--CChHhHHHHHH-HHHhccceEEec
Q 008112 351 GAELP--IEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPT--PTRAEVSDIAI-AVREGADAVMLS 415 (577)
Q Consensus 351 g~elg--~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~--PtrAEv~Dv~n-av~~G~D~imLs 415 (577)
..... .+.+...-+++.+.| ..+.|+++-.. |. .+..++...+. +...|+|++=.+
T Consensus 89 ~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~--------p~~~~~~~~~~~~~~~~~~~g~~~iK~~ 149 (201)
T cd00945 89 GSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVILE--------TRGLKTADEIAKAARIAAEAGADFIKTS 149 (201)
T ss_pred HHHhCCCHHHHHHHHHHHHHHh-cCCceEEEEEE--------CCCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 11111 233444445555555 46899886321 11 13334444433 345799998765
No 90
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=87.77 E-value=11 Score=41.42 Aligned_cols=124 Identities=16% Similarity=0.228 Sum_probs=75.1
Q ss_pred cCHHHHHH-HHhcCCCEEEEc----C-C----------CCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-
Q 008112 277 KDWDDIKF-GVDNKVDFYAVS----F-V----------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA- 339 (577)
Q Consensus 277 kD~~dI~~-al~~gvD~I~~S----f-V----------~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~- 339 (577)
.++.+... ..+.|+|+|-+. . + ++++.+.++.+.+.+. .+++|++||= + .+.++.+|++.
T Consensus 113 ~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~-~~~Pv~vKl~-p-~~~~~~~~a~~~ 189 (420)
T PRK08318 113 EEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG-SRLPVIVKLT-P-NITDIREPARAA 189 (420)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc-cCCcEEEEcC-C-CcccHHHHHHHH
Confidence 34444433 345678887653 1 2 4566666666666543 3689999993 3 45567777663
Q ss_pred ----cCEEEE-----cCCC-----------ccCC------CCCCcHHHHHHHHHHHHHHc---CCceEEEehhhHhhhcC
Q 008112 340 ----SDGAMV-----ARGD-----------LGAE------LPIEEVPLLQEEIIRTCRSM---GKAVIVATNMLESMIVH 390 (577)
Q Consensus 340 ----sDGImI-----aRGD-----------Lg~e------lg~e~v~~~qk~Ii~~c~~a---GKPvi~ATq~LeSM~~~ 390 (577)
+|||.+ +|-+ |... -|....+...+.|-...++. ..|+|-...+.
T Consensus 190 ~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~------ 263 (420)
T PRK08318 190 KRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIE------ 263 (420)
T ss_pred HHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcC------
Confidence 888883 2211 1000 12223555666666666654 57887655443
Q ss_pred CCCChHhHHHHHHHHHhccceEEec
Q 008112 391 PTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 391 ~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
...|+..+++.|+|+||+.
T Consensus 264 ------s~~da~e~i~aGA~~Vqi~ 282 (420)
T PRK08318 264 ------TWRDAAEFILLGAGTVQVC 282 (420)
T ss_pred ------CHHHHHHHHHhCCChheee
Confidence 3467899999999999997
No 91
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=87.68 E-value=21 Score=41.08 Aligned_cols=161 Identities=17% Similarity=0.183 Sum_probs=102.3
Q ss_pred cCHHHHHHHHhcCCCEE--EEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCC-
Q 008112 277 KDWDDIKFGVDNKVDFY--AVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAE- 353 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I--~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~e- 353 (577)
...+.|....+.|+|.| ++|-.+.|+.+.++++.|...|.+++++|-|=-- ---.+. -++.+|.|=|.||.++-.
T Consensus 46 atv~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~-~~~A~~-a~~~vdkiRINPGNi~~~~ 123 (606)
T PRK00694 46 GTVRQICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHFF-PQAAMH-VADFVDKVRINPGNYVDKR 123 (606)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCC-hHHHHH-HHHhcCceEECCcccCCcc
Confidence 33445566678899986 5555666666777777777788999999988431 111112 223389999999999761
Q ss_pred --------------CCCCcHHHHHHHHHHHHHHcCCceEEEeh--hhHh-hhcCCCCChHhH-----HHHHHHHHhccce
Q 008112 354 --------------LPIEEVPLLQEEIIRTCRSMGKAVIVATN--MLES-MIVHPTPTRAEV-----SDIAIAVREGADA 411 (577)
Q Consensus 354 --------------lg~e~v~~~qk~Ii~~c~~aGKPvi~ATq--~LeS-M~~~~~PtrAEv-----~Dv~nav~~G~D~ 411 (577)
-.++++..--+.++++|+++|+|+=+-++ -|+. +...--+|..-+ .-+.-+-..|++=
T Consensus 124 k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~yG~tpegmVeSAle~~~i~e~~~f~d 203 (606)
T PRK00694 124 NMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRYGDTIEGMVYSALEYIEVCEKLDYRD 203 (606)
T ss_pred ccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCCc
Confidence 12335666667899999999999855443 1111 111111233222 2233366789999
Q ss_pred EEeccccCCCCCHHHHHHHHHHHHHHHhccc
Q 008112 412 VMLSGETAHGKFPLKAVKVMHTVSLRTEATI 442 (577)
Q Consensus 412 imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~ 442 (577)
+.+|- .-..|...|+.-+.++++.++.-
T Consensus 204 iviS~---KsSnv~~mi~AyrlLa~~~d~eg 231 (606)
T PRK00694 204 VVFSM---KSSNPKVMVAAYRQLAKDLDARG 231 (606)
T ss_pred EEEEE---EcCCHHHHHHHHHHHHHHhhccC
Confidence 99984 44567788888888888877543
No 92
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=87.63 E-value=0.84 Score=51.09 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=64.2
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHHH----------------hcC-----CCceEEEeecChhhHhhHHHHHHh----c--
Q 008112 288 NKVDFYAVSFVKDAQVVHELKNYLK----------------SCG-----ADIHVIVKIESADSIPNLHSIITA----S-- 340 (577)
Q Consensus 288 ~gvD~I~~SfV~sa~dv~~lr~~l~----------------~~~-----~~i~IiaKIEt~~gv~NldeIl~~----s-- 340 (577)
..+-.|++||++|++++..+.+++. +.+ ..+.||..||+.+++-|+++|+.. .
T Consensus 119 ~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~~~~g~ 198 (491)
T PF14010_consen 119 QPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYLKDKGR 198 (491)
T ss_dssp -S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHHHHTT-
T ss_pred cchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHHHHhcC
Confidence 4567899999999999999976552 111 358899999999999999999985 2
Q ss_pred C----EEEEcCCCccCCCCCCc----HHHHHHHHHHHHHHcCCceE
Q 008112 341 D----GAMVARGDLGAELPIEE----VPLLQEEIIRTCRSMGKAVI 378 (577)
Q Consensus 341 D----GImIaRGDLg~elg~e~----v~~~qk~Ii~~c~~aGKPvi 378 (577)
+ -+|+||.|=++..|+-. +..+..++-+...+.|.|+.
T Consensus 199 ~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~Iy 244 (491)
T PF14010_consen 199 DPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIY 244 (491)
T ss_dssp --SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEE
T ss_pred CchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 2 79999999999988542 33344556666678899874
No 93
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=87.59 E-value=1.3 Score=52.16 Aligned_cols=121 Identities=19% Similarity=0.216 Sum_probs=86.8
Q ss_pred eccCceeeeCCCCCCCCCCCccCHHHHHHHHh----cCCC---EEEEcCCCCHHHHHHHHHHHHhcCCC------ceEEE
Q 008112 256 LKSRRHLNVRGKSATLPSITEKDWDDIKFGVD----NKVD---FYAVSFVKDAQVVHELKNYLKSCGAD------IHVIV 322 (577)
Q Consensus 256 l~s~Kginlp~~~~~lp~ltekD~~dI~~al~----~gvD---~I~~SfV~sa~dv~~lr~~l~~~~~~------i~Iia 322 (577)
|.+++..--|+.. ....|.+..+-.+-+.+ .|.| -.++|+.+++.||.++-=++++.|-- +.|+.
T Consensus 447 L~s~RPL~p~~~~--~Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvP 524 (910)
T COG2352 447 LSSRRPLLPPFWQ--PSEETREELATFRVAAEAKDEFGEDAIGAYIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVP 524 (910)
T ss_pred hcCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCHHHHHHHHHHHHHhCCCCccCCcccccc
Confidence 4455554444422 33445555555544332 3333 25689999999999999999988744 88999
Q ss_pred eecChhhHhhHHHHHHh-----------c-----CEEEEcCCCccCCCCCC----cHHHHHHHHHHHHHHcCCceE
Q 008112 323 KIESADSIPNLHSIITA-----------S-----DGAMVARGDLGAELPIE----EVPLLQEEIIRTCRSMGKAVI 378 (577)
Q Consensus 323 KIEt~~gv~NldeIl~~-----------s-----DGImIaRGDLg~elg~e----~v~~~qk~Ii~~c~~aGKPvi 378 (577)
.-||.+-++|...|+.. . --||+|-.|=.-+=|+- .+..+|+.+++.|+++|+-.=
T Consensus 525 LFETieDL~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lr 600 (910)
T COG2352 525 LFETIEDLDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELR 600 (910)
T ss_pred ccccHHHHhccHHHHHHHHcChHHHHHHcCCCCceEEEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceEE
Confidence 99999999999999973 1 15888877665555544 588899999999999998653
No 94
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=87.57 E-value=15 Score=38.09 Aligned_cols=121 Identities=15% Similarity=0.115 Sum_probs=78.7
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcH
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEV 359 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v 359 (577)
+-++.+.+.|+|++.+|-.- .++..++.+.+++.|-+.-.+..=.| -.+.+..|++.++|.+--=.-.|+.=.-..+
T Consensus 110 ~F~~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~gi~~I~lv~PtT--~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~ 186 (263)
T CHL00200 110 KFIKKISQAGVKGLIIPDLP-YEESDYLISVCNLYNIELILLIAPTS--SKSRIQKIARAAPGCIYLVSTTGVTGLKTEL 186 (263)
T ss_pred HHHHHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHhCCCcEEEEcCCCCCCCCccc
Confidence 45777889999999999874 57888888888887766444444444 4679999999999554421111111111245
Q ss_pred HHHHHHHHHHHHHc-CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 360 PLLQEEIIRTCRSM-GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 360 ~~~qk~Ii~~c~~a-GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
+.-.++.++..+++ ++|+.+-- ..=++ .++......|+|++...
T Consensus 187 ~~~~~~~i~~ir~~t~~Pi~vGF---------GI~~~---e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 187 DKKLKKLIETIKKMTNKPIILGF---------GISTS---EQIKQIKGWNINGIVIG 231 (263)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEC---------CcCCH---HHHHHHHhcCCCEEEEC
Confidence 55556666666654 78877632 22233 35667778899999874
No 95
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=87.40 E-value=1.1 Score=53.17 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=68.8
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHHhcCC--------CceEEEeecChhhHhhHHHHHHh------------c----CEEEE
Q 008112 290 VDFYAVSFVKDAQVVHELKNYLKSCGA--------DIHVIVKIESADSIPNLHSIITA------------S----DGAMV 345 (577)
Q Consensus 290 vD~I~~SfV~sa~dv~~lr~~l~~~~~--------~i~IiaKIEt~~gv~NldeIl~~------------s----DGImI 345 (577)
+.-+++|+.+++.||.++--+.++.|- .+.|+...||.+.++|..+|++. . --||+
T Consensus 364 ~~~yIISmt~~~sdvL~v~~L~k~~gl~~~~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVMl 443 (794)
T PF00311_consen 364 IGRYIISMTESASDVLEVLLLAKEAGLADGGDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVML 443 (794)
T ss_dssp EEEEEECT--SCHHHHHHHHHHHCTT---SS---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEEE
T ss_pred HHHheeeCCCChHHHHHHHHHHHHhCCCcccccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEEe
Confidence 335689999999999999888877653 37899999999999999999984 1 27999
Q ss_pred cCCCccCCCCCC----cHHHHHHHHHHHHHHcCCceEEE
Q 008112 346 ARGDLGAELPIE----EVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 346 aRGDLg~elg~e----~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
|--|=+-+-|+- .+..+|+++.+.|+++|+.+.+.
T Consensus 444 GYSDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~F 482 (794)
T PF00311_consen 444 GYSDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRFF 482 (794)
T ss_dssp ECCCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEEE
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 987766666643 68899999999999999998764
No 96
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=87.40 E-value=15 Score=36.37 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=73.4
Q ss_pred HHHHHHHhcCCCEEEEcCC-CCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCC
Q 008112 280 DDIKFGVDNKVDFYAVSFV-KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIE 357 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV-~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e 357 (577)
..++.+.+.|+|+|.+.-. ...++++++.+.....| +.+++-+- +.+.+..+.+. .|.+.+..-|.... + .
T Consensus 85 ~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g--~~~~v~v~---~~~e~~~~~~~g~~~i~~t~~~~~~~-~-~ 157 (217)
T cd00331 85 YQIYEARAAGADAVLLIVAALDDEQLKELYELARELG--MEVLVEVH---DEEELERALALGAKIIGINNRDLKTF-E-V 157 (217)
T ss_pred HHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcC--CeEEEEEC---CHHHHHHHHHcCCCEEEEeCCCcccc-C-c
Confidence 4688889999999985322 12255566555554443 33444443 33345555544 88888885554322 2 1
Q ss_pred cHHHHHHHHHHHHHH--cCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHH
Q 008112 358 EVPLLQEEIIRTCRS--MGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVK 429 (577)
Q Consensus 358 ~v~~~qk~Ii~~c~~--aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~ 429 (577)
.+ +.+.+.++. .++|++....+- +. .|+..+...|+|++++..--.....|.++++
T Consensus 158 ~~----~~~~~l~~~~~~~~pvia~gGI~---------s~---edi~~~~~~Ga~gvivGsai~~~~~p~~~~~ 215 (217)
T cd00331 158 DL----NTTERLAPLIPKDVILVSESGIS---------TP---EDVKRLAEAGADAVLIGESLMRAPDPGAALR 215 (217)
T ss_pred CH----HHHHHHHHhCCCCCEEEEEcCCC---------CH---HHHHHHHHcCCCEEEECHHHcCCCCHHHHHH
Confidence 22 222223333 467887654432 33 4566777789999998766555556777665
No 97
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=87.34 E-value=39 Score=34.97 Aligned_cols=149 Identities=11% Similarity=0.163 Sum_probs=96.1
Q ss_pred CCccCHHHHHHHH-hcCCCEEEEcCCCCHH-H---------HHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh---
Q 008112 274 ITEKDWDDIKFGV-DNKVDFYAVSFVKDAQ-V---------VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--- 339 (577)
Q Consensus 274 ltekD~~dI~~al-~~gvD~I~~SfV~sa~-d---------v~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~--- 339 (577)
+|..++..|...+ +.|+|+|=+.|....+ + .+.++.+......+.++.+..-.... ++++|...
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~l~~a~~~ 94 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGND--DIDLLEPASGS 94 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCC--CHHHHHHHhcC
Confidence 3566767776555 5899999888765532 1 34455544332236777777766532 33444432
Q ss_pred -cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHH-HHHhccceEEeccc
Q 008112 340 -SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSGE 417 (577)
Q Consensus 340 -sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~n-av~~G~D~imLs~E 417 (577)
.|.|-++ .+...+ ...+++++.++++|..|.+.- . ....-+..++.+++. +...|+|.+.+. +
T Consensus 95 gv~~iri~-------~~~~~~-~~~~~~i~~ak~~G~~v~~~~--~----~a~~~~~~~~~~~~~~~~~~g~~~i~l~-D 159 (266)
T cd07944 95 VVDMIRVA-------FHKHEF-DEALPLIKAIKEKGYEVFFNL--M----AISGYSDEELLELLELVNEIKPDVFYIV-D 159 (266)
T ss_pred CcCEEEEe-------cccccH-HHHHHHHHHHHHCCCeEEEEE--E----eecCCCHHHHHHHHHHHHhCCCCEEEEe-c
Confidence 5676664 343444 344667888999998776532 2 222346777777775 455799999995 9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh
Q 008112 418 TAHGKFPLKAVKVMHTVSLRTE 439 (577)
Q Consensus 418 Ta~G~yP~eaV~~m~~I~~~aE 439 (577)
|.=.-+|.+.-+++..+.....
T Consensus 160 T~G~~~P~~v~~lv~~l~~~~~ 181 (266)
T cd07944 160 SFGSMYPEDIKRIISLLRSNLD 181 (266)
T ss_pred CCCCCCHHHHHHHHHHHHHhcC
Confidence 9889999998888888876543
No 98
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.00 E-value=4.7 Score=40.54 Aligned_cols=108 Identities=13% Similarity=0.203 Sum_probs=69.2
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCC--------CccCCCCCC--cHHH
Q 008112 292 FYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARG--------DLGAELPIE--EVPL 361 (577)
Q Consensus 292 ~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRG--------DLg~elg~e--~v~~ 361 (577)
.|.+=...++++..++.+.+.+.|-++.=|. .-++++++.+.++.+..+.++||-| +.+.+.|.+ -.|.
T Consensus 17 ~iaV~r~~~~~~a~~i~~al~~~Gi~~iEit-l~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~ 95 (212)
T PRK05718 17 VVPVIVINKLEDAVPLAKALVAGGLPVLEVT-LRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG 95 (212)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHcCCCEEEEe-cCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC
Confidence 3444556777887777777766655433222 6677788888887766555666644 112222221 2334
Q ss_pred HHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEe
Q 008112 362 LQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (577)
Q Consensus 362 ~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imL 414 (577)
.-..+++.|++++.|.+=- .-|..| +..+...|+|.+=|
T Consensus 96 ~~~~vi~~a~~~~i~~iPG-----------~~TptE---i~~a~~~Ga~~vKl 134 (212)
T PRK05718 96 LTPPLLKAAQEGPIPLIPG-----------VSTPSE---LMLGMELGLRTFKF 134 (212)
T ss_pred CCHHHHHHHHHcCCCEeCC-----------CCCHHH---HHHHHHCCCCEEEE
Confidence 4468999999999998710 123444 77899999999988
No 99
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=86.77 E-value=33 Score=37.10 Aligned_cols=155 Identities=14% Similarity=0.093 Sum_probs=97.7
Q ss_pred CCccCHHHHHH-HHhcCCCEEEEc-CCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEE--cCC
Q 008112 274 ITEKDWDDIKF-GVDNKVDFYAVS-FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMV--ARG 348 (577)
Q Consensus 274 ltekD~~dI~~-al~~gvD~I~~S-fV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImI--aRG 348 (577)
+|..++..|.. -.+.|+|.|=+. ++.+.++.+.++... +.+.+..+.+-+-. -.+.++..++. .|.|.+ +-.
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~-~~~~~~~v~~~~r~--~~~di~~a~~~g~~~i~i~~~~S 95 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKIS-QEGLNAEICSLARA--LKKDIDKAIDCGVDSIHTFIATS 95 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHH-hcCCCcEEEEEccc--CHHHHHHHHHcCcCEEEEEEcCC
Confidence 45556555544 456899998764 466777776666554 34566777766532 12344444444 565444 323
Q ss_pred CccC----CCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHH-HHHhccceEEeccccCCCCC
Q 008112 349 DLGA----ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSGETAHGKF 423 (577)
Q Consensus 349 DLg~----elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~n-av~~G~D~imLs~ETa~G~y 423 (577)
|+-. ....++......+.++.|+++|..+.+... ....-+...+.+++. +...|+|.|.|. +|.=.-+
T Consensus 96 d~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e------da~r~~~~~l~~~~~~~~~~g~~~i~l~-DT~G~~~ 168 (363)
T TIGR02090 96 PIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE------DATRTDIDFLIKVFKRAEEAGADRINIA-DTVGVLT 168 (363)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe------ecCCCCHHHHHHHHHHHHhCCCCEEEEe-CCCCccC
Confidence 3211 123334455566788899999998876432 223445666666665 466799999996 8888889
Q ss_pred HHHHHHHHHHHHHHH
Q 008112 424 PLKAVKVMHTVSLRT 438 (577)
Q Consensus 424 P~eaV~~m~~I~~~a 438 (577)
|.+.-+.+..+....
T Consensus 169 P~~v~~li~~l~~~~ 183 (363)
T TIGR02090 169 PQKMEELIKKLKENV 183 (363)
T ss_pred HHHHHHHHHHHhccc
Confidence 999888888876544
No 100
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=86.75 E-value=16 Score=36.23 Aligned_cols=131 Identities=17% Similarity=0.117 Sum_probs=69.4
Q ss_pred cCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEE---ee----------c-ChhhHhhHHHHHHh-cC
Q 008112 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIV---KI----------E-SADSIPNLHSIITA-SD 341 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~Iia---KI----------E-t~~gv~NldeIl~~-sD 341 (577)
.+.++++..++.|+|.|++..- ..++...+++..+..+.+..+++ +. . ..+.++-+..+.+. +|
T Consensus 83 ~~~e~~~~~~~~Gad~vvigs~-~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~ 161 (234)
T cd04732 83 RSLEDIERLLDLGVSRVIIGTA-AVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVK 161 (234)
T ss_pred CCHHHHHHHHHcCCCEEEECch-HHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCC
Confidence 4578888888999999887643 23444455555555554222222 10 0 11122223333333 78
Q ss_pred EEEEc-CCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCC
Q 008112 342 GAMVA-RGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAH 420 (577)
Q Consensus 342 GImIa-RGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~ 420 (577)
++.+- +.--+..-+ .. .+.+-+.++....|++.+..+- +. .|+..+...|+|++|+..---.
T Consensus 162 ~iii~~~~~~g~~~g-~~----~~~i~~i~~~~~ipvi~~GGi~---------~~---~di~~~~~~Ga~gv~vg~~~~~ 224 (234)
T cd04732 162 AIIYTDISRDGTLSG-PN----FELYKELAAATGIPVIASGGVS---------SL---DDIKALKELGVAGVIVGKALYE 224 (234)
T ss_pred EEEEEeecCCCccCC-CC----HHHHHHHHHhcCCCEEEecCCC---------CH---HHHHHHHHCCCCEEEEeHHHHc
Confidence 88774 221222222 12 1223333455689999865533 44 3455556669999999755555
Q ss_pred CCCHH
Q 008112 421 GKFPL 425 (577)
Q Consensus 421 G~yP~ 425 (577)
|+++.
T Consensus 225 ~~~~~ 229 (234)
T cd04732 225 GKITL 229 (234)
T ss_pred CCCCH
Confidence 55543
No 101
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=86.69 E-value=17 Score=41.86 Aligned_cols=154 Identities=13% Similarity=0.147 Sum_probs=99.7
Q ss_pred cCHHHHHHHHhcCCCEE--EEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCC
Q 008112 277 KDWDDIKFGVDNKVDFY--AVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAEL 354 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I--~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~el 354 (577)
.-.+.|....+.|+|.| ++|-.+.|+.+.++++.+...|.+++++|-|=----+ .+. -++.+|.|=|-||.++-.-
T Consensus 42 atv~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~-A~~-a~~~v~kiRINPGN~~~~~ 119 (611)
T PRK02048 42 ACVAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKV-ADV-AAQYAEKVRINPGNYVDPG 119 (611)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHH-HHH-HHHhhCCEEECCCcCCCcc
Confidence 33445566678999986 4555566666667777777788899999987432222 122 2234999999999997641
Q ss_pred ---------------CCCcHHHHHHHHHHHHHHcCCceEEEeh-------hhHhhhcCCCCChHhH-----HHHHHHHHh
Q 008112 355 ---------------PIEEVPLLQEEIIRTCRSMGKAVIVATN-------MLESMIVHPTPTRAEV-----SDIAIAVRE 407 (577)
Q Consensus 355 ---------------g~e~v~~~qk~Ii~~c~~aGKPvi~ATq-------~LeSM~~~~~PtrAEv-----~Dv~nav~~ 407 (577)
.++++.+--+.++++|+++|+|+=+-++ +++.. -+|..-+ .-+--+-..
T Consensus 120 k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~y----g~tpe~mVeSAle~~~i~e~~ 195 (611)
T PRK02048 120 RTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRY----GDTPEGMVESCMEFLRICVEE 195 (611)
T ss_pred ccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh----CCChHHHHHHHHHHHHHHHHC
Confidence 1234556667899999999999855443 23221 1233222 222336678
Q ss_pred ccceEEeccccCCCCCHHHHHHHHHHHHH
Q 008112 408 GADAVMLSGETAHGKFPLKAVKVMHTVSL 436 (577)
Q Consensus 408 G~D~imLs~ETa~G~yP~eaV~~m~~I~~ 436 (577)
|++=+.+|--++.-...+.+.+.+..-..
T Consensus 196 ~f~diviS~KsS~~~~~V~AyRlLa~~l~ 224 (611)
T PRK02048 196 HFTDVVISIKASNTVVMVRTVRLLVAVME 224 (611)
T ss_pred CCCcEEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 99999999877777666666666655543
No 102
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=86.39 E-value=17 Score=35.47 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEE-eecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCC
Q 008112 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITA-SDGAMVARGDLGAELPI 356 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~ 356 (577)
.+.++.+++.|++.|-+.+ ++......++.+.+..+ +..|-+ -|=| -+++++.+.. +|+++.+-.|
T Consensus 19 ~~~~~~l~~~G~~~vev~~-~~~~~~~~i~~l~~~~~-~~~iGag~v~~---~~~~~~a~~~Ga~~i~~p~~~------- 86 (190)
T cd00452 19 LALAEALIEGGIRAIEITL-RTPGALEAIRALRKEFP-EALIGAGTVLT---PEQADAAIAAGAQFIVSPGLD------- 86 (190)
T ss_pred HHHHHHHHHCCCCEEEEeC-CChhHHHHHHHHHHHCC-CCEEEEEeCCC---HHHHHHHHHcCCCEEEcCCCC-------
Confidence 3445667789999999986 67777777766655443 343333 2222 3456666666 8899754222
Q ss_pred CcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 357 EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 357 e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
..++..|+..|.|++.- .-|. +++..|...|+|.+.+.
T Consensus 87 -------~~~~~~~~~~~~~~i~g-----------v~t~---~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 87 -------PEVVKAANRAGIPLLPG-----------VATP---TEIMQALELGADIVKLF 124 (190)
T ss_pred -------HHHHHHHHHcCCcEECC-----------cCCH---HHHHHHHHCCCCEEEEc
Confidence 36888999999987641 1133 44778889999999984
No 103
>PRK15452 putative protease; Provisional
Probab=86.35 E-value=5.5 Score=44.40 Aligned_cols=117 Identities=13% Similarity=0.125 Sum_probs=71.2
Q ss_pred ccCHHHHHHHHhcCCCEEEEcCC----------CCHHHHHHHHHHHHhcCCCceEEEe-ecChhhHhhHHHHHH----h-
Q 008112 276 EKDWDDIKFGVDNKVDFYAVSFV----------KDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIIT----A- 339 (577)
Q Consensus 276 ekD~~dI~~al~~gvD~I~~SfV----------~sa~dv~~lr~~l~~~~~~i~IiaK-IEt~~gv~NldeIl~----~- 339 (577)
-.+.+.++.|++.|||.|.+.+- =+.+|+.++.++.++.|.++.+..- |=..+-++.+.+.++ .
T Consensus 10 ag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~g 89 (443)
T PRK15452 10 AGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMK 89 (443)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCC
Confidence 46889999999999999998321 1458899999999887766544321 222233444444443 3
Q ss_pred cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHc--CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccc
Q 008112 340 SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGE 417 (577)
Q Consensus 340 sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~a--GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~E 417 (577)
.|||+|+ |+|+ +..+++. +.|+...||+-- +-.+ .+--+-..|++.+.||-|
T Consensus 90 vDgvIV~--d~G~--------------l~~~ke~~p~l~ih~stqlni--------~N~~--a~~f~~~lG~~rvvLSrE 143 (443)
T PRK15452 90 PDALIMS--DPGL--------------IMMVREHFPEMPIHLSVQANA--------VNWA--TVKFWQQMGLTRVILSRE 143 (443)
T ss_pred CCEEEEc--CHHH--------------HHHHHHhCCCCeEEEEecccC--------CCHH--HHHHHHHCCCcEEEECCc
Confidence 8999996 3331 2233332 778999888631 1111 122234457777777765
Q ss_pred c
Q 008112 418 T 418 (577)
Q Consensus 418 T 418 (577)
-
T Consensus 144 L 144 (443)
T PRK15452 144 L 144 (443)
T ss_pred C
Confidence 4
No 104
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=86.26 E-value=46 Score=36.25 Aligned_cols=155 Identities=16% Similarity=0.122 Sum_probs=95.5
Q ss_pred CCccCHHHHHH-HHhcCCCEEEEcCCC-CHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEE--cCC
Q 008112 274 ITEKDWDDIKF-GVDNKVDFYAVSFVK-DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMV--ARG 348 (577)
Q Consensus 274 ltekD~~dI~~-al~~gvD~I~~SfV~-sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImI--aRG 348 (577)
+|..++..|.. -.+.|+|.|=+.|-. +.++.+.++.+ ...+.+..+++-.-. -.+.++..++. .|.|-+ .-.
T Consensus 23 ~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i-~~~~~~~~i~~~~r~--~~~di~~a~~~g~~~i~i~~~~S 99 (378)
T PRK11858 23 FTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAI-AKLGLNASILALNRA--VKSDIDASIDCGVDAVHIFIATS 99 (378)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHH-HhcCCCeEEEEEccc--CHHHHHHHHhCCcCEEEEEEcCC
Confidence 34455555544 456899998775543 33444444444 344556666655322 13345555544 564433 333
Q ss_pred Cc----cCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHH-HHhccceEEeccccCCCCC
Q 008112 349 DL----GAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIA-VREGADAVMLSGETAHGKF 423 (577)
Q Consensus 349 DL----g~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~na-v~~G~D~imLs~ETa~G~y 423 (577)
|+ -.....++.....++.++.+++.|..+.+.. .....-+...+.+++.+ ...|+|.|.|. +|.=.-+
T Consensus 100 d~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~-DT~G~~~ 172 (378)
T PRK11858 100 DIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA------EDASRTDLDFLIEFAKAAEEAGADRVRFC-DTVGILD 172 (378)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe------ccCCCCCHHHHHHHHHHHHhCCCCEEEEe-ccCCCCC
Confidence 32 1112233455566778889999999887642 23445566677777764 55799999996 8998899
Q ss_pred HHHHHHHHHHHHHHH
Q 008112 424 PLKAVKVMHTVSLRT 438 (577)
Q Consensus 424 P~eaV~~m~~I~~~a 438 (577)
|.+.-+++..+.+..
T Consensus 173 P~~v~~lv~~l~~~~ 187 (378)
T PRK11858 173 PFTMYELVKELVEAV 187 (378)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999988887665
No 105
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=86.15 E-value=36 Score=34.05 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=72.2
Q ss_pred HHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhcccc
Q 008112 364 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATIT 443 (577)
Q Consensus 364 k~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~ 443 (577)
.-+...|+..|.|+++- .|....-......-..|++.+...+. | -++.+...+++.+-...++
T Consensus 63 ~alA~~a~~~g~~~~v~-----------~p~~~~~~~~~~~~~~Ga~v~~~~~~-----~-~~~~~~a~~~~~~~~~~~~ 125 (244)
T cd00640 63 IALAAAAARLGLKCTIV-----------MPEGASPEKVAQMRALGAEVVLVPGD-----F-DDAIALAKELAEEDPGAYY 125 (244)
T ss_pred HHHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEECCC-----H-HHHHHHHHHHHHhCCCCEe
Confidence 35667889999999874 23333445566777889998777533 3 4666666666554222222
Q ss_pred CCCCCCCCCcccCCChhHHHHHHHHHHHhhcC---c-eEEEEcCChHHHHHHH----hhCCCCeEEEEcC
Q 008112 444 GGAMPPNLGQAFKNHMSEMFAYHATMMSNTLG---T-SIVVFTRTGFMAILLS----HYRPSGTIFAFTN 505 (577)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~---a-aIiV~T~sG~tA~~is----~~RP~~PIIAvT~ 505 (577)
..+. .+ ....+....-+.++.++++ . .|++.+-+|.++--++ .+.|...|+++-+
T Consensus 126 ~~~~-~n------~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 126 VNQF-DN------PANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred cCCC-CC------HHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 1111 11 1122333344456666654 3 7999999998877555 4568899999876
No 106
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=86.12 E-value=21 Score=35.65 Aligned_cols=142 Identities=16% Similarity=0.159 Sum_probs=82.8
Q ss_pred CCCCccCHHHH-HHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeec-----------ChhhHhhHHHHHHh
Q 008112 272 PSITEKDWDDI-KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIE-----------SADSIPNLHSIITA 339 (577)
Q Consensus 272 p~ltekD~~dI-~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIE-----------t~~gv~NldeIl~~ 339 (577)
|..+..|.+.+ +.+.+.|+|.++++ +-.+...+..+. ....++.++- +..=+..+++.++.
T Consensus 16 p~~~~~d~~~~~~~~~~~g~~av~v~----~~~~~~~~~~~~---~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~ 88 (235)
T cd00958 16 PNPGLEDPEETVKLAAEGGADAVALT----KGIARAYGREYA---GDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRL 88 (235)
T ss_pred CCccccCHHHHHHHHHhcCCCEEEeC----hHHHHhcccccC---CCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHC
Confidence 55577786654 67788899999987 334444444331 1233443331 11122345666655
Q ss_pred -cCEE--EEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCC----CCChHhHHH-HHHHHHhccce
Q 008112 340 -SDGA--MVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHP----TPTRAEVSD-IAIAVREGADA 411 (577)
Q Consensus 340 -sDGI--mIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~----~PtrAEv~D-v~nav~~G~D~ 411 (577)
+|++ ++-.|++. ..++...-+++.+.|+++|.|+|+=+.. ... .-+..++.. ...+...|+|.
T Consensus 89 Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~iie~~~-----~g~~~~~~~~~~~i~~~~~~a~~~GaD~ 159 (235)
T cd00958 89 GADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPLIAWMYP-----RGPAVKNEKDPDLIAYAARIGAELGADI 159 (235)
T ss_pred CCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCEEEEEec-----cCCcccCccCHHHHHHHHHHHHHHCCCE
Confidence 7877 55445442 3456667788999999999999873221 000 012345554 45578899999
Q ss_pred EEeccccCCCCCHHHHHHHHHHHHHH
Q 008112 412 VMLSGETAHGKFPLKAVKVMHTVSLR 437 (577)
Q Consensus 412 imLs~ETa~G~yP~eaV~~m~~I~~~ 437 (577)
|-.+..+ -++.+.++++.
T Consensus 160 Ik~~~~~--------~~~~~~~i~~~ 177 (235)
T cd00958 160 VKTKYTG--------DAESFKEVVEG 177 (235)
T ss_pred EEecCCC--------CHHHHHHHHhc
Confidence 9996322 24555666543
No 107
>PLN02591 tryptophan synthase
Probab=85.89 E-value=22 Score=36.75 Aligned_cols=119 Identities=17% Similarity=0.163 Sum_probs=77.1
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEE--EcCCCccCCCCCC
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAM--VARGDLGAELPIE 357 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGIm--IaRGDLg~elg~e 357 (577)
+-++.+.+.|+|++++|=.- .++..++++.+++.| +..|.-+=--..-+.+..|++.++|.+ |++ .|+.=.-.
T Consensus 97 ~F~~~~~~aGv~GviipDLP-~ee~~~~~~~~~~~g--l~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~--~GvTG~~~ 171 (250)
T PLN02591 97 KFMATIKEAGVHGLVVPDLP-LEETEALRAEAAKNG--IELVLLTTPTTPTERMKAIAEASEGFVYLVSS--TGVTGARA 171 (250)
T ss_pred HHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcC--CeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeC--CCCcCCCc
Confidence 45677789999999999763 577888888877654 444554411122457899999887655 233 22221112
Q ss_pred cHHHHHHHHHHHHHH-cCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 358 EVPLLQEEIIRTCRS-MGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 358 ~v~~~qk~Ii~~c~~-aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
.++.-.+..++.+++ .++|+++-.. .-++ .|+..+...|+|++...
T Consensus 172 ~~~~~~~~~i~~vk~~~~~Pv~vGFG---------I~~~---e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 172 SVSGRVESLLQELKEVTDKPVAVGFG---------ISKP---EHAKQIAGWGADGVIVG 218 (250)
T ss_pred CCchhHHHHHHHHHhcCCCceEEeCC---------CCCH---HHHHHHHhcCCCEEEEC
Confidence 445566777777776 4899887543 2234 35777888899999975
No 108
>PRK07695 transcriptional regulator TenI; Provisional
Probab=85.69 E-value=16 Score=35.69 Aligned_cols=129 Identities=12% Similarity=0.113 Sum_probs=76.7
Q ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCC---CCC
Q 008112 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAEL---PIE 357 (577)
Q Consensus 282 I~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~el---g~e 357 (577)
...+++.|+|++-++.- ...+..+++.+ .+..|-+.+.|.+ .+.+..+. +|.+++++-.-+..- +..
T Consensus 66 ~~la~~~~~~gvHl~~~--~~~~~~~r~~~----~~~~ig~s~~s~e---~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~ 136 (201)
T PRK07695 66 VDIALLLNIHRVQLGYR--SFSVRSVREKF----PYLHVGYSVHSLE---EAIQAEKNGADYVVYGHVFPTDCKKGVPAR 136 (201)
T ss_pred HHHHHHcCCCEEEeCcc--cCCHHHHHHhC----CCCEEEEeCCCHH---HHHHHHHcCCCEEEECCCCCCCCCCCCCCC
Confidence 44677889999988863 22345555543 2445555554433 23333333 899998864333211 111
Q ss_pred cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHH
Q 008112 358 EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSL 436 (577)
Q Consensus 358 ~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~ 436 (577)
.+ +.+-+.+....+|++....+ +. .++..+...|+|++.+.+.-.....|.++++.+.++.+
T Consensus 137 g~----~~l~~~~~~~~ipvia~GGI----------~~---~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~ 198 (201)
T PRK07695 137 GL----EELSDIARALSIPVIAIGGI----------TP---ENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIK 198 (201)
T ss_pred CH----HHHHHHHHhCCCCEEEEcCC----------CH---HHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHh
Confidence 11 22222234457998865432 22 34666778999999987776666789999998887654
No 109
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=85.67 E-value=13 Score=39.50 Aligned_cols=143 Identities=20% Similarity=0.231 Sum_probs=77.4
Q ss_pred HHHHHHHhcCCCEEEEcCC----CC---H----HHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-----cCEE
Q 008112 280 DDIKFGVDNKVDFYAVSFV----KD---A----QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGA 343 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV----~s---a----~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-----sDGI 343 (577)
+..+.+.+.|+|+|-+.+- .. . +.+.++.+.+.+ ..+++|++|+ ++ .+.++.+++.. +|||
T Consensus 118 ~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~-~~~iPV~vKl-~p-~~~~~~~~a~~l~~~G~dgI 194 (334)
T PRK07565 118 DYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKS-AVSIPVAVKL-SP-YFSNLANMAKRLDAAGADGL 194 (334)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHh-ccCCcEEEEe-CC-CchhHHHHHHHHHHcCCCeE
Confidence 3334445678999877331 10 1 112222233322 2368999997 33 33445555543 7887
Q ss_pred EEc-CCCccCCCCC--------------CcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhc
Q 008112 344 MVA-RGDLGAELPI--------------EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREG 408 (577)
Q Consensus 344 mIa-RGDLg~elg~--------------e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G 408 (577)
.+. |. .+..+.+ .-.+...+.+-...+..+.|+|-...+. -..|+..++..|
T Consensus 195 ~~~n~~-~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~------------s~~Da~e~l~aG 261 (334)
T PRK07565 195 VLFNRF-YQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVH------------DAEDVIKMLLAG 261 (334)
T ss_pred EEECCc-CCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCC------------CHHHHHHHHHcC
Confidence 663 32 1221111 1234455555444555578877544433 246788999999
Q ss_pred cceEEeccccCCCCCHHHHHHHHHHHHHHHhcccc
Q 008112 409 ADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATIT 443 (577)
Q Consensus 409 ~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~ 443 (577)
+|+|++..---. +-| +++.+|+++.+..+.
T Consensus 262 A~~V~v~t~~~~-~g~----~~~~~i~~~L~~~l~ 291 (334)
T PRK07565 262 ADVVMIASALLR-HGP----DYIGTILRGLEDWME 291 (334)
T ss_pred CCceeeehHHhh-hCc----HHHHHHHHHHHHHHH
Confidence 999999733222 113 466667777766544
No 110
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=85.43 E-value=29 Score=35.51 Aligned_cols=154 Identities=12% Similarity=0.094 Sum_probs=91.0
Q ss_pred CCccCHHHH-HHHHhcCCCEEEEcCCCCH-HHHHHHHHHHHhcCCCceEEEee-cChhhHhhHHHHHHh-cCEEEEc--C
Q 008112 274 ITEKDWDDI-KFGVDNKVDFYAVSFVKDA-QVVHELKNYLKSCGADIHVIVKI-ESADSIPNLHSIITA-SDGAMVA--R 347 (577)
Q Consensus 274 ltekD~~dI-~~al~~gvD~I~~SfV~sa-~dv~~lr~~l~~~~~~i~IiaKI-Et~~gv~NldeIl~~-sDGImIa--R 347 (577)
+|..++..| +.-.+.|+|.|=+.|-... .+.+.++.+ ...+.+..+.+-. -+.++ ++...+. .|.|-+. -
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l-~~~~~~~~~~~~~r~~~~~---v~~a~~~g~~~i~i~~~~ 92 (259)
T cd07939 17 FSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAI-VALGLPARLIVWCRAVKED---IEAALRCGVTAVHISIPV 92 (259)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHH-HhcCCCCEEEEeccCCHHH---HHHHHhCCcCEEEEEEec
Confidence 444554444 4555789999877554333 333444444 3334455555543 23333 3333333 5654442 1
Q ss_pred CCc----cCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHH-HHhccceEEeccccCCCC
Q 008112 348 GDL----GAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIA-VREGADAVMLSGETAHGK 422 (577)
Q Consensus 348 GDL----g~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~na-v~~G~D~imLs~ETa~G~ 422 (577)
.|. -.....++.....+.+++.|+++|..+.+.. .....-+..++.+++.. ...|+|.+.|. +|.=.-
T Consensus 93 s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT~G~~ 165 (259)
T cd07939 93 SDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA------EDASRADPDFLIEFAEVAQEAGADRLRFA-DTVGIL 165 (259)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee------ccCCCCCHHHHHHHHHHHHHCCCCEEEeC-CCCCCC
Confidence 111 0011222334455678899999999876533 13344567777777764 46799999995 898899
Q ss_pred CHHHHHHHHHHHHHHH
Q 008112 423 FPLKAVKVMHTVSLRT 438 (577)
Q Consensus 423 yP~eaV~~m~~I~~~a 438 (577)
+|.+.-+.+..+.+..
T Consensus 166 ~P~~v~~lv~~l~~~~ 181 (259)
T cd07939 166 DPFTTYELIRRLRAAT 181 (259)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999888888777554
No 111
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=85.38 E-value=15 Score=40.36 Aligned_cols=132 Identities=17% Similarity=0.153 Sum_probs=83.4
Q ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcC-CCcc-CCCCCCcH
Q 008112 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVAR-GDLG-AELPIEEV 359 (577)
Q Consensus 282 I~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaR-GDLg-~elg~e~v 359 (577)
++.+.+.|+|++.+..--..+.+.++.+.+++.|..+.+ -.+.....++.++++....|.|.+.+ -|=+ ..-++
T Consensus 243 v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgV-D~lnp~tp~e~i~~l~~~vD~Vllht~vdp~~~~~~~--- 318 (391)
T PRK13307 243 ARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSIL-DMLNVEDPVKLLESLKVKPDVVELHRGIDEEGTEHAW--- 318 (391)
T ss_pred HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEE-EEcCCCCHHHHHHHhhCCCCEEEEccccCCCcccchH---
Confidence 556779999999999877777888888888877754433 03433345667777766689888876 2322 11111
Q ss_pred HHHHHHHHHHHHH--cCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHH
Q 008112 360 PLLQEEIIRTCRS--MGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVS 435 (577)
Q Consensus 360 ~~~qk~Ii~~c~~--aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~ 435 (577)
++ ++..++ .+.++.++-.+ + ..++..++..|+|.+.+.+--..-+-|.++++.+.+.+
T Consensus 319 ----~k-I~~ikk~~~~~~I~VdGGI----------~---~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i 378 (391)
T PRK13307 319 ----GN-IKEIKKAGGKILVAVAGGV----------R---VENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKL 378 (391)
T ss_pred ----HH-HHHHHHhCCCCcEEEECCc----------C---HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence 22 222333 24566664321 1 23467788899999887543223356999988887665
No 112
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=85.24 E-value=16 Score=37.10 Aligned_cols=99 Identities=21% Similarity=0.301 Sum_probs=57.6
Q ss_pred CCCCCCccCHHHHHHHHhcCCCEEEE--cC---CCCHHHHHHH-----------------HHHHHhcCCCceEEEeec-C
Q 008112 270 TLPSITEKDWDDIKFGVDNKVDFYAV--SF---VKDAQVVHEL-----------------KNYLKSCGADIHVIVKIE-S 326 (577)
Q Consensus 270 ~lp~ltekD~~dI~~al~~gvD~I~~--Sf---V~sa~dv~~l-----------------r~~l~~~~~~i~IiaKIE-t 326 (577)
..|.+ +...+.++...+.|+|++=+ || +-+...|..+ .+.+++. .+++++.+.. +
T Consensus 9 G~P~~-~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~-~~~pv~lm~y~n 86 (242)
T cd04724 9 GDPDL-ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKK-NTIPIVLMGYYN 86 (242)
T ss_pred CCCCH-HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-CCCCEEEEEecC
Confidence 44543 34456667777789998644 45 4444444432 1222221 2456666555 4
Q ss_pred h---hhHhhHHHHH-Hh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 327 A---DSIPNLHSII-TA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 327 ~---~gv~NldeIl-~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
+ .|++++=+-+ +. +||+++. || |+| -.++++..|+++|...+++
T Consensus 87 ~~~~~G~~~fi~~~~~aG~~giiip--Dl----~~e----e~~~~~~~~~~~g~~~i~~ 135 (242)
T cd04724 87 PILQYGLERFLRDAKEAGVDGLIIP--DL----PPE----EAEEFREAAKEYGLDLIFL 135 (242)
T ss_pred HHHHhCHHHHHHHHHHCCCcEEEEC--CC----CHH----HHHHHHHHHHHcCCcEEEE
Confidence 2 2445554433 33 8999996 55 332 4578999999999877653
No 113
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=85.15 E-value=39 Score=32.92 Aligned_cols=136 Identities=15% Similarity=0.153 Sum_probs=78.0
Q ss_pred HHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecCh-hhHhhHHHHHH-hcCEEEEcCCCccCCCCCCc
Q 008112 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESA-DSIPNLHSIIT-ASDGAMVARGDLGAELPIEE 358 (577)
Q Consensus 281 dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~-~gv~NldeIl~-~sDGImIaRGDLg~elg~e~ 358 (577)
.++.+.+.|+|+|.+++......+.++.+++++.| +++++-+-++ +-.+.+....+ -+|.+-+.+|-=+-..+...
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g--~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~ 145 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHG--KEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKGQNP 145 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC--CEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCCCC
Confidence 67778899999999888776667788888877654 5555543232 22334444455 48988887652222222222
Q ss_pred HHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHH
Q 008112 359 VPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 434 (577)
Q Consensus 359 v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I 434 (577)
+. .+-+..+....+.+.++.- -+. ..+..+...|+|++.+.+.-..-+-|.++++.++++
T Consensus 146 ~~----~i~~l~~~~~~~~i~v~GG---------I~~---~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 146 FE----DLQTILKLVKEARVAVAGG---------INL---DTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred HH----HHHHHHHhcCCCcEEEECC---------cCH---HHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 21 2222222222344432321 133 235567789999999854433334588888877654
No 114
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=84.05 E-value=21 Score=37.29 Aligned_cols=167 Identities=16% Similarity=0.059 Sum_probs=102.4
Q ss_pred CceeeeCCCCCCCCCCCccCHHHHHHHH-hc-CCCEEEEc-CCCCHHHHHHHHHHHHhc---C--CCceEEEeecChhhH
Q 008112 259 RRHLNVRGKSATLPSITEKDWDDIKFGV-DN-KVDFYAVS-FVKDAQVVHELKNYLKSC---G--ADIHVIVKIESADSI 330 (577)
Q Consensus 259 ~Kginlp~~~~~lp~ltekD~~dI~~al-~~-gvD~I~~S-fV~sa~dv~~lr~~l~~~---~--~~i~IiaKIEt~~gv 330 (577)
|-|..-|+.. +|.+++..|...+ +. |+|.|=+. |.-+++|.+.+++..... + .+..+++.+.+..+
T Consensus 6 RDG~Q~~~~~-----~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~- 79 (280)
T cd07945 6 RDGEQTSGVS-----FSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKS- 79 (280)
T ss_pred CCcCcCCCCc-----cCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHH-
Confidence 4455555544 3556666666664 55 99999774 558997777777665422 1 14566666655443
Q ss_pred hhHHHHHHh-cCEEEEc--CCCccC----CCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCC-CCChHhHHHHH
Q 008112 331 PNLHSIITA-SDGAMVA--RGDLGA----ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHP-TPTRAEVSDIA 402 (577)
Q Consensus 331 ~NldeIl~~-sDGImIa--RGDLg~----elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~-~PtrAEv~Dv~ 402 (577)
++..++. .|.|-+. -.|.-. ....++.....+++++.|+.+|..+.+.-.. ..+| +-+...+.+++
T Consensus 80 --~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d----~~~~~r~~~~~~~~~~ 153 (280)
T cd07945 80 --VDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED----WSNGMRDSPDYVFQLV 153 (280)
T ss_pred --HHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe----CCCCCcCCHHHHHHHH
Confidence 4444433 5655443 122111 1223455566678899999999887664332 1222 22345566666
Q ss_pred H-HHHhccceEEeccccCCCCCHHHHHHHHHHHHHHH
Q 008112 403 I-AVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRT 438 (577)
Q Consensus 403 n-av~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~a 438 (577)
. +...|+|.|.|. +|.=.-.|.+.-++++.+.+..
T Consensus 154 ~~~~~~G~~~i~l~-DT~G~~~P~~v~~l~~~l~~~~ 189 (280)
T cd07945 154 DFLSDLPIKRIMLP-DTLGILSPFETYTYISDMVKRY 189 (280)
T ss_pred HHHHHcCCCEEEec-CCCCCCCHHHHHHHHHHHHhhC
Confidence 5 556799999995 8888889999988888886543
No 115
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=83.82 E-value=6.7 Score=43.14 Aligned_cols=126 Identities=18% Similarity=0.266 Sum_probs=82.1
Q ss_pred CccCHHHHHHHHhcCCCEEEEc--CCCCHHHHHHHHHHHHhcCCCceEEE-eecChhhHhhHHHHHHhcCEEEEcCCCcc
Q 008112 275 TEKDWDDIKFGVDNKVDFYAVS--FVKDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVARGDLG 351 (577)
Q Consensus 275 tekD~~dI~~al~~gvD~I~~S--fV~sa~dv~~lr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDGImIaRGDLg 351 (577)
-+.|+..+..-.+.|+|+|++- -=+|--+++.+ +|+++.-.+..||+ -.=|.+=.+|| |.+-+||+-||=|-=+
T Consensus 249 re~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemi-k~iK~~yP~l~ViaGNVVT~~qa~nL--I~aGaDgLrVGMGsGS 325 (503)
T KOG2550|consen 249 RDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMI-KYIKETYPDLQIIAGNVVTKEQAANL--IAAGADGLRVGMGSGS 325 (503)
T ss_pred ccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHH-HHHHhhCCCceeeccceeeHHHHHHH--HHccCceeEeccccCc
Confidence 3567788888889999999873 33344444444 57777778888887 45554444443 4445999999855433
Q ss_pred CCCCCC--cHH----HHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 352 AELPIE--EVP----LLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 352 ~elg~e--~v~----~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
+-+--+ -+- .+--++.+.|+..|.|||--.. -.-+.+++.|+..|++.+|+.
T Consensus 326 iCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGG------------iq~~Ghi~KAl~lGAstVMmG 383 (503)
T KOG2550|consen 326 ICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGG------------IQNVGHVVKALGLGASTVMMG 383 (503)
T ss_pred eeeeceeeeccCCcccchhhHHHHHHhcCCceeecCC------------cCccchhHhhhhcCchhheec
Confidence 333222 111 1223577888999999984221 224567899999999999973
No 116
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=83.69 E-value=55 Score=33.89 Aligned_cols=165 Identities=16% Similarity=0.131 Sum_probs=94.0
Q ss_pred cCceeeeCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCceEEEe-ecChhhHhhHHH
Q 008112 258 SRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSF-VKDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHS 335 (577)
Q Consensus 258 s~Kginlp~~~~~lp~ltekD~~dI~~al~~gvD~I~~Sf-V~sa~dv~~lr~~l~~~~~~i~IiaK-IEt~~gv~Nlde 335 (577)
-|-|...|+..++ ++.-.+.++.-.+.|+|.|=+.+ -.++++...++. +...+....+.+- .-+.+++ +.
T Consensus 8 LRDG~Q~~~~~~s----~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~-l~~~~~~~~v~~~~r~~~~di---~~ 79 (262)
T cd07948 8 LREGEQFANAFFD----TEDKIEIAKALDAFGVDYIELTSPAASPQSRADCEA-IAKLGLKAKILTHIRCHMDDA---RI 79 (262)
T ss_pred CCCcCcCCCCCCC----HHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH-HHhCCCCCcEEEEecCCHHHH---HH
Confidence 4556666665443 33334555566679999987633 334555444444 3334444444433 2223332 33
Q ss_pred HHHh-cCEEEEc--CCCcc----CCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHh-
Q 008112 336 IITA-SDGAMVA--RGDLG----AELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVRE- 407 (577)
Q Consensus 336 Il~~-sDGImIa--RGDLg----~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~- 407 (577)
.++. .|.|.+- -.|.- .....++.....+++++.++++|..+.+.-. +. ..-+...+.+++..+.+
T Consensus 80 a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e--da----~r~~~~~l~~~~~~~~~~ 153 (262)
T cd07948 80 AVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE--DS----FRSDLVDLLRVYRAVDKL 153 (262)
T ss_pred HHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE--ee----CCCCHHHHHHHHHHHHHc
Confidence 3333 5654442 11110 1122345566667889999999988766432 11 11125556666665444
Q ss_pred ccceEEeccccCCCCCHHHHHHHHHHHHHH
Q 008112 408 GADAVMLSGETAHGKFPLKAVKVMHTVSLR 437 (577)
Q Consensus 408 G~D~imLs~ETa~G~yP~eaV~~m~~I~~~ 437 (577)
|+|.+.|. +|.=.-+|.+.-+++..+-+.
T Consensus 154 g~~~i~l~-Dt~G~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 154 GVNRVGIA-DTVGIATPRQVYELVRTLRGV 182 (262)
T ss_pred CCCEEEEC-CcCCCCCHHHHHHHHHHHHHh
Confidence 99999985 888889999988888877543
No 117
>PRK00915 2-isopropylmalate synthase; Validated
Probab=83.61 E-value=58 Score=37.02 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=100.6
Q ss_pred CCccCHHHHHHH-HhcCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-----cC--EEE
Q 008112 274 ITEKDWDDIKFG-VDNKVDFYAVSF-VKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SD--GAM 344 (577)
Q Consensus 274 ltekD~~dI~~a-l~~gvD~I~~Sf-V~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-----sD--GIm 344 (577)
+|..++..|... .+.|+|.|=+.| .-++.|.+.++.+.. ...+..+.+-.-.. .++++..++. .+ .++
T Consensus 23 ~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~-~~~~~~i~a~~r~~--~~did~a~~a~~~~~~~~v~i~ 99 (513)
T PRK00915 23 LTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIAR-TVKNSTVCGLARAV--KKDIDAAAEALKPAEAPRIHTF 99 (513)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHh-hCCCCEEEEEccCC--HHHHHHHHHHhhcCCCCEEEEE
Confidence 455666555444 568999998766 568888888876554 34566666655332 2345544432 22 355
Q ss_pred EcCCCccC----CCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHH-HHhccceEEeccccC
Q 008112 345 VARGDLGA----ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIA-VREGADAVMLSGETA 419 (577)
Q Consensus 345 IaRGDLg~----elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~na-v~~G~D~imLs~ETa 419 (577)
++-.|+-. ....+++.....+.++.|+++|.-|.+... ...+-+...+.+++.+ ...|+|.+.|. +|.
T Consensus 100 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~e------d~~r~d~~~l~~~~~~~~~~Ga~~i~l~-DTv 172 (513)
T PRK00915 100 IATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAE------DATRTDLDFLCRVVEAAIDAGATTINIP-DTV 172 (513)
T ss_pred ECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeC------CCCCCCHHHHHHHHHHHHHcCCCEEEEc-cCC
Confidence 55555422 233445666667889999999998876433 2223334445666664 45699999995 999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 008112 420 HGKFPLKAVKVMHTVSLRT 438 (577)
Q Consensus 420 ~G~yP~eaV~~m~~I~~~a 438 (577)
=+-.|.+.-+++..+.+..
T Consensus 173 G~~~P~~~~~~i~~l~~~~ 191 (513)
T PRK00915 173 GYTTPEEFGELIKTLRERV 191 (513)
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 9999999999988887654
No 118
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=83.44 E-value=17 Score=39.24 Aligned_cols=119 Identities=23% Similarity=0.263 Sum_probs=83.4
Q ss_pred CccCHHHHHHHHhcCCCEEEEcCC----------CCHHHHHHHHHHHHhcCCCceEEEee----cChhh-HhhHHHHHHh
Q 008112 275 TEKDWDDIKFGVDNKVDFYAVSFV----------KDAQVVHELKNYLKSCGADIHVIVKI----ESADS-IPNLHSIITA 339 (577)
Q Consensus 275 tekD~~dI~~al~~gvD~I~~SfV----------~sa~dv~~lr~~l~~~~~~i~IiaKI----Et~~g-v~NldeIl~~ 339 (577)
+..++++++.+++.|+|.|-+.+- -+-+|+.+..+++++.|++..+..-+ +..+. .+-++...+.
T Consensus 12 pag~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~ 91 (347)
T COG0826 12 PAGNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVEL 91 (347)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHc
Confidence 446889999999999999988843 56788999999999999875544321 11111 3344555544
Q ss_pred -cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcC--CceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEecc
Q 008112 340 -SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMG--KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG 416 (577)
Q Consensus 340 -sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aG--KPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ 416 (577)
.|+|+++ |+| ++..+++.+ .|+.+.||+-= |-++ .+--+-..|+.-++|+-
T Consensus 92 GvDaviv~--Dpg--------------~i~l~~e~~p~l~ih~S~q~~v--------~N~~--~~~f~~~~G~~rvVl~r 145 (347)
T COG0826 92 GVDAVIVA--DPG--------------LIMLARERGPDLPIHVSTQANV--------TNAE--TAKFWKELGAKRVVLPR 145 (347)
T ss_pred CCCEEEEc--CHH--------------HHHHHHHhCCCCcEEEeeeEec--------CCHH--HHHHHHHcCCEEEEeCc
Confidence 9999996 553 467788888 99999999651 1222 12335566999999998
Q ss_pred ccC
Q 008112 417 ETA 419 (577)
Q Consensus 417 ETa 419 (577)
|-+
T Consensus 146 Els 148 (347)
T COG0826 146 ELS 148 (347)
T ss_pred cCC
Confidence 865
No 119
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=83.30 E-value=11 Score=38.61 Aligned_cols=99 Identities=21% Similarity=0.285 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceE
Q 008112 300 DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVI 378 (577)
Q Consensus 300 sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi 378 (577)
+.++..++.+++++. .+..++-.=..++ +|.+.+. .+.+=||-+||. .+ .+++.+.+.|||+|
T Consensus 54 ~~e~~~~L~~~~~~~--gi~f~stpfd~~s---~d~l~~~~~~~~KIaS~dl~------n~-----~lL~~~A~tgkPvI 117 (241)
T PF03102_consen 54 SEEQHKELFEYCKEL--GIDFFSTPFDEES---VDFLEELGVPAYKIASGDLT------NL-----PLLEYIAKTGKPVI 117 (241)
T ss_dssp -HHHHHHHHHHHHHT--T-EEEEEE-SHHH---HHHHHHHT-SEEEE-GGGTT-------H-----HHHHHHHTT-S-EE
T ss_pred CHHHHHHHHHHHHHc--CCEEEECCCCHHH---HHHHHHcCCCEEEecccccc------CH-----HHHHHHHHhCCcEE
Confidence 455666677777654 3445554434444 4444443 889999988885 22 36677888999999
Q ss_pred EEehhhHhhhcCCCCChHhHHHHHHHH-HhccceEEeccccCCCCCHH
Q 008112 379 VATNMLESMIVHPTPTRAEVSDIAIAV-REGADAVMLSGETAHGKFPL 425 (577)
Q Consensus 379 ~ATq~LeSM~~~~~PtrAEv~Dv~nav-~~G~D~imLs~ETa~G~yP~ 425 (577)
+.|.|- |-+|+.++.+.+ ..|.+-+.|-.= +..||.
T Consensus 118 lSTG~s---------tl~EI~~Av~~~~~~~~~~l~llHC--~s~YP~ 154 (241)
T PF03102_consen 118 LSTGMS---------TLEEIERAVEVLREAGNEDLVLLHC--VSSYPT 154 (241)
T ss_dssp EE-TT-----------HHHHHHHHHHHHHHCT--EEEEEE---SSSS-
T ss_pred EECCCC---------CHHHHHHHHHHHHhcCCCCEEEEec--CCCCCC
Confidence 999876 779999999988 666655554222 346774
No 120
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=83.12 E-value=6.8 Score=42.35 Aligned_cols=252 Identities=16% Similarity=0.215 Sum_probs=122.5
Q ss_pred HHHHHHHHhcCCCEE--EEcCCCCHHHHHHHHHHHHhcCCCceEEEeec--ChhhHhhHHHHHHhcCEEEEcCCCccCCC
Q 008112 279 WDDIKFGVDNKVDFY--AVSFVKDAQVVHELKNYLKSCGADIHVIVKIE--SADSIPNLHSIITASDGAMVARGDLGAEL 354 (577)
Q Consensus 279 ~~dI~~al~~gvD~I--~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIE--t~~gv~NldeIl~~sDGImIaRGDLg~el 354 (577)
.+.|+.-.+.|+|.| ++|-.+.++.+.++++.|...|.+++++|-|= -.-|++ .+-. +|.|=|.||.++-+.
T Consensus 34 v~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~---a~~~-v~kiRINPGNi~~~~ 109 (359)
T PF04551_consen 34 VAQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALE---AIEA-VDKIRINPGNIVDEF 109 (359)
T ss_dssp HHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHH---HHHC--SEEEE-TTTSS---
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHH---HHHH-hCeEEECCCcccccc
Confidence 344555567899985 55666666677777777778899999999873 333333 3333 899999999996322
Q ss_pred --CCCcHHHHHHHHHHHHHHcCCceEEEe--hhhHh-hhcCCCCChHhH-----HHHHHHHHhccceEEeccccCCCCCH
Q 008112 355 --PIEEVPLLQEEIIRTCRSMGKAVIVAT--NMLES-MIVHPTPTRAEV-----SDIAIAVREGADAVMLSGETAHGKFP 424 (577)
Q Consensus 355 --g~e~v~~~qk~Ii~~c~~aGKPvi~AT--q~LeS-M~~~~~PtrAEv-----~Dv~nav~~G~D~imLs~ETa~G~yP 424 (577)
+...+.+--+.++++|+++|+|+=+-. .-|+. |...-.||..-+ ..+.-+-..|+|=+.+|-=+ ..+
T Consensus 110 ~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~iviSlKs---Sdv 186 (359)
T PF04551_consen 110 QEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELGFDDIVISLKS---SDV 186 (359)
T ss_dssp -SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEEEB---SSH
T ss_pred cccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcEEEEEEe---CCh
Confidence 223567888999999999999973322 22221 111002222211 22333556788888887444 345
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCcccCCChhHHHHHHHHHHH----hhcCceEEE-EcCChHHHHHHHhhCCCCe
Q 008112 425 LKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMS----NTLGTSIVV-FTRTGFMAILLSHYRPSGT 499 (577)
Q Consensus 425 ~eaV~~m~~I~~~aE~~~~~~~~~~~l~~~~~~~~~~~ia~~a~~~a----~~~~aaIiV-~T~sG~tA~~is~~RP~~P 499 (577)
..+++.-+.+.++...-+ .|+-..-.+..+.+..+++.+. +-++-.|-| +|.+.-.-..++
T Consensus 187 ~~~i~ayr~la~~~dyPL-------HLGvTEAG~~~~g~IkSsigiG~LL~~GIGDTIRVSLt~~p~~EV~va------- 252 (359)
T PF04551_consen 187 PETIEAYRLLAERMDYPL-------HLGVTEAGTGEDGTIKSSIGIGALLLDGIGDTIRVSLTGDPVEEVKVA------- 252 (359)
T ss_dssp HHHHHHHHHHHHH--S-E-------EEEBSSEESCHHHHHHHHHHHHHHHHTT--SEEEE-ECSSCCCHHHHH-------
T ss_pred HHHHHHHHHHHHhcCCCe-------EEeecCCCCcccchhHHHHHHHHHHHcCCCCEEEEECCCCchHHHHHH-------
Confidence 566666555655554111 1111111123344555555443 334434544 664432222221
Q ss_pred EEEEcCcHHHhhhhcccC-CeeEEEeccCCCH-HHHHHHHHHHHHHcCCCCCCCEEEEEec
Q 008112 500 IFAFTNEKRIQQRLSLYQ-GVCPIYMEFSDDA-EETFDNALGLLQKQGMVKEGEEVALLQS 558 (577)
Q Consensus 500 IIAvT~~~~taR~L~L~~-GV~Pvl~~~~~d~-d~~i~~al~~l~e~Gllk~GD~VVvv~G 558 (577)
..+.+.|.|.+ |+.=+-+|...-. -+..+.+-++-....-++.|=.|.|...
T Consensus 253 -------~~IL~al~lR~~g~~~ISCPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGC 306 (359)
T PF04551_consen 253 -------FEILQALGLRKRGPEIISCPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGC 306 (359)
T ss_dssp -------HHHHHHTTSS-SS-EEEE----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESS
T ss_pred -------HHHHHHhCcCcCCceeeeCCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEee
Confidence 23455666655 6665666644211 1233333333333445666667776644
No 121
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=83.09 E-value=33 Score=33.60 Aligned_cols=132 Identities=19% Similarity=0.185 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCCCEEEE-----cCCCC----HHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCC
Q 008112 279 WDDIKFGVDNKVDFYAV-----SFVKD----AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARG 348 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~-----SfV~s----a~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRG 348 (577)
.+.++.+.+.|+|+|-+ +|+.+ .+.++++++.+. ....+-.++-. ..+.++.+.+. +||+.+--+
T Consensus 19 ~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~---~~~~v~l~v~d--~~~~i~~~~~~g~d~v~vh~~ 93 (220)
T PRK05581 19 GEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTK---LPLDVHLMVEN--PDRYVPDFAKAGADIITFHVE 93 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCC---CcEEEEeeeCC--HHHHHHHHHHcCCCEEEEeec
Confidence 34567888899999999 98854 555555554331 12223344443 33355666555 799776311
Q ss_pred CccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEecc--ccCCC-CCHH
Q 008112 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG--ETAHG-KFPL 425 (577)
Q Consensus 349 DLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~--ETa~G-~yP~ 425 (577)
.. ......++.+++.|..+++++. |. |..| ....+..++|.+.+.+ .+..| .++.
T Consensus 94 -------~~---~~~~~~~~~~~~~~~~~g~~~~--------~~-t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~~~ 151 (220)
T PRK05581 94 -------AS---EHIHRLLQLIKSAGIKAGLVLN--------PA-TPLE---PLEDVLDLLDLVLLMSVNPGFGGQKFIP 151 (220)
T ss_pred -------cc---hhHHHHHHHHHHcCCEEEEEEC--------CC-CCHH---HHHHHHhhCCEEEEEEECCCCCcccccH
Confidence 11 2234568889999998887542 11 2222 2344556688766532 22233 4455
Q ss_pred HHHHHHHHHHHH
Q 008112 426 KAVKVMHTVSLR 437 (577)
Q Consensus 426 eaV~~m~~I~~~ 437 (577)
..++.++.+...
T Consensus 152 ~~~~~i~~~~~~ 163 (220)
T PRK05581 152 EVLEKIRELRKL 163 (220)
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
No 122
>PRK09389 (R)-citramalate synthase; Provisional
Probab=82.93 E-value=42 Score=37.99 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=98.3
Q ss_pred CccCHHHH-HHHHhcCCCEEEEc-CCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCE--EEEcCCC
Q 008112 275 TEKDWDDI-KFGVDNKVDFYAVS-FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDG--AMVARGD 349 (577)
Q Consensus 275 tekD~~dI-~~al~~gvD~I~~S-fV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDG--ImIaRGD 349 (577)
|..++..| +.-.+.|+|.|=+. ++.+..|.+.++.... .+.+..|.+..-.. .+.++..++. .|. ++++--|
T Consensus 22 s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~-~~~~~~i~a~~r~~--~~di~~a~~~g~~~v~i~~~~Sd 98 (488)
T PRK09389 22 TPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTD-EGLNAEICSFARAV--KVDIDAALECDVDSVHLVVPTSD 98 (488)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHh-cCCCcEEEeecccC--HHHHHHHHhCCcCEEEEEEccCH
Confidence 44554444 44557999998664 5678888888876554 45567777766553 3345555554 554 3343334
Q ss_pred ccC----CCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHH-HHhccceEEeccccCCCCCH
Q 008112 350 LGA----ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIA-VREGADAVMLSGETAHGKFP 424 (577)
Q Consensus 350 Lg~----elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~na-v~~G~D~imLs~ETa~G~yP 424 (577)
+-. ....+++...-.+.++.|+++|..+.+... ...+-+..-+.+++.+ ...|+|.+.|. +|.=.-.|
T Consensus 99 ~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~e------d~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DTvG~~~P 171 (488)
T PRK09389 99 LHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGE------DASRADLDFLKELYKAGIEAGADRICFC-DTVGILTP 171 (488)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe------eCCCCCHHHHHHHHHHHHhCCCCEEEEe-cCCCCcCH
Confidence 311 122334555556777889999988776432 3444555566666664 45699999995 89989999
Q ss_pred HHHHHHHHHHHHH
Q 008112 425 LKAVKVMHTVSLR 437 (577)
Q Consensus 425 ~eaV~~m~~I~~~ 437 (577)
.+.-++++.+.+.
T Consensus 172 ~~~~~lv~~l~~~ 184 (488)
T PRK09389 172 EKTYELFKRLSEL 184 (488)
T ss_pred HHHHHHHHHHHhh
Confidence 9998888777654
No 123
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=82.89 E-value=57 Score=33.10 Aligned_cols=133 Identities=11% Similarity=0.024 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCCCEEEEcCCC----------CHHHHHHHHHHHHhcCCCceEEEe-------e---c---ChhhHhhHHH
Q 008112 279 WDDIKFGVDNKVDFYAVSFVK----------DAQVVHELKNYLKSCGADIHVIVK-------I---E---SADSIPNLHS 335 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~----------sa~dv~~lr~~l~~~~~~i~IiaK-------I---E---t~~gv~Nlde 335 (577)
.+.++++.++|.|+|=+++.. +.+++.++++.+.+.|-.+.-+.- + + ..++++.+..
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~ 98 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKK 98 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHH
Confidence 366788889999999887543 467899999999888765443310 1 1 1235666666
Q ss_pred HHHh-----cCEEEEcCCCccCCC----CCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHH
Q 008112 336 IITA-----SDGAMVARGDLGAEL----PIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVR 406 (577)
Q Consensus 336 Il~~-----sDGImIaRGDLg~el----g~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~ 406 (577)
.++. ++.|.+..++...+- .++.+....+++...+.++|..+.+ |.|-..-.++.++..++...+
T Consensus 99 ~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l-----E~~~~~~~~~~~~~~~l~~~v- 172 (284)
T PRK13210 99 AIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV-----EIMDTPFMNSISKWKKWDKEI- 172 (284)
T ss_pred HHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE-----EecCccccCCHHHHHHHHHHc-
Confidence 6654 567766533321111 1123344456677778888876553 444333456677777776665
Q ss_pred hccceEEecccc
Q 008112 407 EGADAVMLSGET 418 (577)
Q Consensus 407 ~G~D~imLs~ET 418 (577)
+.+.+-+.-++
T Consensus 173 -~~~~~~~~~D~ 183 (284)
T PRK13210 173 -DSPWLTVYPDV 183 (284)
T ss_pred -CCCceeEEecC
Confidence 34555555454
No 124
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.38 E-value=7.2 Score=39.01 Aligned_cols=107 Identities=15% Similarity=0.247 Sum_probs=66.3
Q ss_pred EEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCC--------ccCCCCCC--cHHHHH
Q 008112 294 AVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGD--------LGAELPIE--EVPLLQ 363 (577)
Q Consensus 294 ~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGD--------Lg~elg~e--~v~~~q 363 (577)
.+=...++++..++.+.+-+.|-+. +=.-.-|+.+++.+.++.+..+.++||-|= ..++.|.+ --|...
T Consensus 8 ~Vir~~~~~~a~~ia~al~~gGi~~-iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~ 86 (201)
T PRK06015 8 PVLLIDDVEHAVPLARALAAGGLPA-IEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTT 86 (201)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCCE-EEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCC
Confidence 3334456677777766666554431 222345777777777776665667776541 11222211 123456
Q ss_pred HHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 364 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 364 k~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
.++++.|+++|+|++ |--.-.+++..|...|+|.+=+=
T Consensus 87 ~~vi~~a~~~~i~~i--------------PG~~TptEi~~A~~~Ga~~vK~F 124 (201)
T PRK06015 87 QELLAAANDSDVPLL--------------PGAATPSEVMALREEGYTVLKFF 124 (201)
T ss_pred HHHHHHHHHcCCCEe--------------CCCCCHHHHHHHHHCCCCEEEEC
Confidence 789999999999987 22223345889999999998884
No 125
>PRK15447 putative protease; Provisional
Probab=82.31 E-value=11 Score=39.79 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=78.0
Q ss_pred ccCHHHHHHHH-hcCCCEEEEcCCC-------CHHHHHHHHHHHHhcCCCceE-EEee-cChhhHhhHHHHHHh-cCEEE
Q 008112 276 EKDWDDIKFGV-DNKVDFYAVSFVK-------DAQVVHELKNYLKSCGADIHV-IVKI-ESADSIPNLHSIITA-SDGAM 344 (577)
Q Consensus 276 ekD~~dI~~al-~~gvD~I~~SfV~-------sa~dv~~lr~~l~~~~~~i~I-iaKI-Et~~gv~NldeIl~~-sDGIm 344 (577)
....++.-.++ +.|||.|-+.... +.+++.++.+++++.|+++.+ +..| -..+-++.+.++++. .|+|+
T Consensus 14 ~~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~ 93 (301)
T PRK15447 14 KETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVE 93 (301)
T ss_pred CCCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEE
Confidence 35677777777 5699999987332 679999999999998887665 3354 445566777777765 56777
Q ss_pred EcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccC
Q 008112 345 VARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETA 419 (577)
Q Consensus 345 IaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa 419 (577)
++ |+| .+..+ ++.|.|++..||+= + +-.+- +.-+-..|++.+.||-|-+
T Consensus 94 v~--d~g------~l~~~--------~e~~~~l~~d~~ln---i-----~N~~a--~~~l~~~G~~rv~ls~ELs 142 (301)
T PRK15447 94 AN--DLG------AVRLL--------AERGLPFVAGPALN---C-----YNAAT--LALLARLGATRWCMPVELS 142 (301)
T ss_pred Ee--CHH------HHHHH--------HhcCCCEEEecccc---c-----CCHHH--HHHHHHcCCcEEEECCcCC
Confidence 74 332 12222 23499999988863 0 11121 2234557999999997755
No 126
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=82.30 E-value=42 Score=37.04 Aligned_cols=137 Identities=16% Similarity=0.174 Sum_probs=81.3
Q ss_pred HHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEE-eecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCc
Q 008112 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEE 358 (577)
Q Consensus 281 dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~ 358 (577)
+++.+.+.|+|+|.++.-.+...+.++.+++.+.|.. ++. .+-....++.+....+. +|.|.+++|--+-..+...
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~--~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~~ 150 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVR--LMADLINVPDPVKRAVELEELGVDYINVHVGIDQQMLGKDP 150 (430)
T ss_pred HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCE--EEEEecCCCCHHHHHHHHHhcCCCEEEEEeccchhhcCCCh
Confidence 7888999999999876433444566677777665443 333 12222335556666665 8999888764322222211
Q ss_pred HHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHH
Q 008112 359 VPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSL 436 (577)
Q Consensus 359 v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~ 436 (577)
....+++. ...+.|+.+...+ +. ..+..++..|+|++.+.+--..-.-|.++++.+.+.++
T Consensus 151 -~~~l~~l~---~~~~iPI~a~GGI----------~~---~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~ 211 (430)
T PRK07028 151 -LELLKEVS---EEVSIPIAVAGGL----------DA---ETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAID 211 (430)
T ss_pred -HHHHHHHH---hhCCCcEEEECCC----------CH---HHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHh
Confidence 12222322 2346887664322 22 33667888999999986554444568888887776654
No 127
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=82.15 E-value=45 Score=36.12 Aligned_cols=166 Identities=16% Similarity=0.113 Sum_probs=93.9
Q ss_pred cCceeeeCCCCCCCCCCCccCHHHHHHHHhcCCCEEEE-cCCCCH------HHHHHHHHHHHhcCCCceEEEeecChhhH
Q 008112 258 SRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAV-SFVKDA------QVVHELKNYLKSCGADIHVIVKIESADSI 330 (577)
Q Consensus 258 s~Kginlp~~~~~lp~ltekD~~dI~~al~~gvD~I~~-SfV~sa------~dv~~lr~~l~~~~~~i~IiaKIEt~~gv 330 (577)
-|-|..-|+..++ ++.-.+.++.-.+.|++.|=+ ||| ++ .|-.++.+.+... ....+.+-+=+.+++
T Consensus 54 lRDG~Q~~g~~~s----~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i~~~-~~~~~~~l~~n~~di 127 (347)
T PLN02746 54 PRDGLQNEKNIVP----TSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAVRNL-EGARFPVLTPNLKGF 127 (347)
T ss_pred CCccCcCCCCCCC----HHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHHHhc-cCCceeEEcCCHHHH
Confidence 3445555655433 343344455556799999854 666 43 2434444444332 122222222244444
Q ss_pred hhHHHHHHh-cCEEEEc--CCCcc----CCCCCCcHHHHHHHHHHHHHHcCCceE--EEehhhHhhhcCCCCChH---hH
Q 008112 331 PNLHSIITA-SDGAMVA--RGDLG----AELPIEEVPLLQEEIIRTCRSMGKAVI--VATNMLESMIVHPTPTRA---EV 398 (577)
Q Consensus 331 ~NldeIl~~-sDGImIa--RGDLg----~elg~e~v~~~qk~Ii~~c~~aGKPvi--~ATq~LeSM~~~~~PtrA---Ev 398 (577)
+. .++. .|.|.+. -.|+= .....++.....+++++.|+++|..+. +++. ..+|.-+|. .+
T Consensus 128 e~---A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~-----fg~p~~~r~~~~~l 199 (347)
T PLN02746 128 EA---AIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCV-----VGCPIEGPVPPSKV 199 (347)
T ss_pred HH---HHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEee-----ecCCccCCCCHHHH
Confidence 43 3333 5654432 22221 123345666667799999999999884 2211 123333443 34
Q ss_pred HHHHH-HHHhccceEEeccccCCCCCHHHHHHHHHHHHHHH
Q 008112 399 SDIAI-AVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRT 438 (577)
Q Consensus 399 ~Dv~n-av~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~a 438 (577)
.+++. +...|+|.|.|. +|.=--.|.+..+++..+..+.
T Consensus 200 ~~~~~~~~~~Gad~I~l~-DT~G~a~P~~v~~lv~~l~~~~ 239 (347)
T PLN02746 200 AYVAKELYDMGCYEISLG-DTIGVGTPGTVVPMLEAVMAVV 239 (347)
T ss_pred HHHHHHHHHcCCCEEEec-CCcCCcCHHHHHHHHHHHHHhC
Confidence 44444 778899999995 8888888999999988886543
No 128
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=81.66 E-value=32 Score=40.48 Aligned_cols=159 Identities=18% Similarity=0.211 Sum_probs=96.9
Q ss_pred cCHHHHHHHHhcCCCEE--EEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCC
Q 008112 277 KDWDDIKFGVDNKVDFY--AVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAEL 354 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I--~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~el 354 (577)
.-.+.|+...+.|+|.| +++-.+.|+.+..+++.|...|.+++++|-|=--- .-..+-++.+|.|=|.||.++-.-
T Consensus 111 atv~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~--~~Al~a~~~vdkiRINPGN~~~~~ 188 (733)
T PLN02925 111 ATVDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAP--SVALRVAECFDKIRVNPGNFADRR 188 (733)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCH--HHHHHHHHhcCCeEECCcccCCcc
Confidence 33445566678999986 45555666666677777777888999999874321 111223334999999999998762
Q ss_pred C---------------CCcHHHHHHHHHHHHHHcCCceEEEeh--hhHh-hhcCCCCChH-----hHHHHHHHHHhccce
Q 008112 355 P---------------IEEVPLLQEEIIRTCRSMGKAVIVATN--MLES-MIVHPTPTRA-----EVSDIAIAVREGADA 411 (577)
Q Consensus 355 g---------------~e~v~~~qk~Ii~~c~~aGKPvi~ATq--~LeS-M~~~~~PtrA-----Ev~Dv~nav~~G~D~ 411 (577)
- ++++.+--..++++|+++|+|+=+-++ -|+. +...--+|.. -+.-+.-+-..|++=
T Consensus 189 k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f~d 268 (733)
T PLN02925 189 AQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHN 268 (733)
T ss_pred ccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCc
Confidence 1 113333345799999999999855443 1110 0000011211 112233366789999
Q ss_pred EEeccccCCCCCHHHHHHHHHHHHHHHhc
Q 008112 412 VMLSGETAHGKFPLKAVKVMHTVSLRTEA 440 (577)
Q Consensus 412 imLs~ETa~G~yP~eaV~~m~~I~~~aE~ 440 (577)
+.+|-- -..|...|...+.++.+.+.
T Consensus 269 iviS~K---sSn~~~~V~AyR~La~~L~~ 294 (733)
T PLN02925 269 FVFSMK---ASNPVVMVQAYRLLVAEMYV 294 (733)
T ss_pred EEEEEE---cCChHHHHHHHHHHHHHHHh
Confidence 999854 44566777777777766543
No 129
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.39 E-value=6.7 Score=41.12 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=51.6
Q ss_pred CHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhH--hhHHHHHHh-cCEEEEc
Q 008112 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVA 346 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-sDGImIa 346 (577)
..+++..+++.|+|.|.+=.. ++++++++.+++.+.+.+.. .+||---|+ +|+.++++. +|+|.+|
T Consensus 191 ~leea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~--~~leaSGGI~~~ni~~yA~tGvD~Is~g 259 (278)
T PRK08385 191 SLEDALKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRER--VKIEVSGGITPENIEEYAKLDVDVISLG 259 (278)
T ss_pred CHHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCC--EEEEEECCCCHHHHHHHHHcCCCEEEeC
Confidence 678888999999999999887 89999999999877662222 245554454 588888887 8999987
No 130
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=81.35 E-value=28 Score=35.13 Aligned_cols=133 Identities=12% Similarity=0.002 Sum_probs=78.2
Q ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHH-hcCEEEEcCCCccCCCCCCcHH
Q 008112 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT-ASDGAMVARGDLGAELPIEEVP 360 (577)
Q Consensus 282 I~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~-~sDGImIaRGDLg~elg~e~v~ 360 (577)
+..|++.|+|+|-++ ++-.++.++|+.+. .+. +|.- =+....++..+-.+ -+|++.+|+- +. ......-+
T Consensus 80 ~dlA~~~~adGVHLg--~~d~~~~~~r~~~~---~~~-iiG~-s~~~s~~~a~~A~~~gaDYv~~Gpv-~t-~tK~~~~p 150 (221)
T PRK06512 80 SRIAGRVKADGLHIE--GNLAALAEAIEKHA---PKM-IVGF-GNLRDRHGAMEIGELRPDYLFFGKL-GA-DNKPEAHP 150 (221)
T ss_pred HHHHHHhCCCEEEEC--ccccCHHHHHHhcC---CCC-EEEe-cCCCCHHHHHHhhhcCCCEEEECCC-CC-CCCCCCCC
Confidence 556778899999888 33345777776652 222 3322 11111222222222 2899999986 32 11111111
Q ss_pred HHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHH
Q 008112 361 LLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSL 436 (577)
Q Consensus 361 ~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~ 436 (577)
.-...+-+.|+...+||+---.+ + ..++......|+|++.+.+.-..-..|.++++-+..++.
T Consensus 151 ~gl~~l~~~~~~~~iPvvAIGGI----------~---~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~ 213 (221)
T PRK06512 151 RNLSLAEWWAEMIEIPCIVQAGS----------D---LASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLD 213 (221)
T ss_pred CChHHHHHHHHhCCCCEEEEeCC----------C---HHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHh
Confidence 11111223566678998754332 1 234667788999999998877777889999998887765
No 131
>PRK08005 epimerase; Validated
Probab=80.97 E-value=50 Score=33.23 Aligned_cols=136 Identities=9% Similarity=0.045 Sum_probs=88.3
Q ss_pred CCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCC
Q 008112 274 ITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAE 353 (577)
Q Consensus 274 ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~e 353 (577)
+.+.=...|+.-.+.|+|.|.+- ++...+..++-+++++.|.+..+..+-+| -++.+..++...|.|+| ++++
T Consensus 66 Mv~~P~~~i~~~~~~gad~It~H-~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~T--p~~~i~~~l~~vD~Vlv----MsV~ 138 (210)
T PRK08005 66 MVSSPQRWLPWLAAIRPGWIFIH-AESVQNPSEILADIRAIGAKAGLALNPAT--PLLPYRYLALQLDALMI----MTSE 138 (210)
T ss_pred ccCCHHHHHHHHHHhCCCEEEEc-ccCccCHHHHHHHHHHcCCcEEEEECCCC--CHHHHHHHHHhcCEEEE----EEec
Confidence 33333345666678999988765 46667788888889999999999999998 57889999999999998 6666
Q ss_pred CCCC---cHHHHHHHHHHHHHHcCC-ceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCC--CCHHHH
Q 008112 354 LPIE---EVPLLQEEIIRTCRSMGK-AVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHG--KFPLKA 427 (577)
Q Consensus 354 lg~e---~v~~~qk~Ii~~c~~aGK-Pvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G--~yP~ea 427 (577)
-|+. -++..-++|-+..+.... .+-+ ... =+. .-+...+..|+|.+.+. |++- +-|.+.
T Consensus 139 PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~V---------DGG-I~~---~~i~~l~~aGad~~V~G--saiF~~~d~~~~ 203 (210)
T PRK08005 139 PDGRGQQFIAAMCEKVSQSREHFPAAECWA---------DGG-ITL---RAARLLAAAGAQHLVIG--RALFTTANYDVT 203 (210)
T ss_pred CCCccceecHHHHHHHHHHHHhcccCCEEE---------ECC-CCH---HHHHHHHHCCCCEEEEC--hHhhCCCCHHHH
Confidence 6655 355555555544332221 2222 111 111 22446778999988875 3442 336666
Q ss_pred HHHH
Q 008112 428 VKVM 431 (577)
Q Consensus 428 V~~m 431 (577)
++.|
T Consensus 204 ~~~~ 207 (210)
T PRK08005 204 LSQF 207 (210)
T ss_pred HHHH
Confidence 6554
No 132
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=80.82 E-value=28 Score=33.83 Aligned_cols=131 Identities=14% Similarity=0.092 Sum_probs=71.8
Q ss_pred HHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHH----hcCEEEEcCCCccCCCC-
Q 008112 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT----ASDGAMVARGDLGAELP- 355 (577)
Q Consensus 281 dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~----~sDGImIaRGDLg~elg- 355 (577)
+++.+.+.|+|+|.++.-. .....++... +....+-+-. . +.+++.+ -+|.|.+++-.=+..=+
T Consensus 73 ~~~~a~~~gad~vh~~~~~--~~~~~~~~~~---~~~~~~g~~~--~----t~~e~~~a~~~gaD~v~~~~~~~~~~~~~ 141 (212)
T PRK00043 73 RVDLALAVGADGVHLGQDD--LPVADARALL---GPDAIIGLST--H----TLEEAAAALAAGADYVGVGPIFPTPTKKD 141 (212)
T ss_pred hHHHHHHcCCCEEecCccc--CCHHHHHHHc---CCCCEEEEeC--C----CHHHHHHHhHcCCCEEEECCccCCCCCCC
Confidence 4677889999999886532 2233343322 2333333322 2 3334333 38999987432222111
Q ss_pred CC-cH-HHHHHHHHHHHHHcC-CceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHH
Q 008112 356 IE-EV-PLLQEEIIRTCRSMG-KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 432 (577)
Q Consensus 356 ~e-~v-~~~qk~Ii~~c~~aG-KPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~ 432 (577)
.. .. ....+++. .... .|++....+ +. .++..+...|+|++.+.+.-..-.-|.++++.+.
T Consensus 142 ~~~~~g~~~~~~~~---~~~~~~~v~a~GGI----------~~---~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~ 205 (212)
T PRK00043 142 AKAPQGLEGLREIR---AAVGDIPIVAIGGI----------TP---ENAPEVLEAGADGVAVVSAITGAEDPEAAARALL 205 (212)
T ss_pred CCCCCCHHHHHHHH---HhcCCCCEEEECCc----------CH---HHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHH
Confidence 00 00 12222222 2223 788765432 22 4577888899999998655444466999999887
Q ss_pred HHHHHH
Q 008112 433 TVSLRT 438 (577)
Q Consensus 433 ~I~~~a 438 (577)
...+++
T Consensus 206 ~~~~~~ 211 (212)
T PRK00043 206 AAFRAA 211 (212)
T ss_pred HHHhhc
Confidence 776553
No 133
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=80.68 E-value=19 Score=38.86 Aligned_cols=242 Identities=18% Similarity=0.201 Sum_probs=140.8
Q ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHH
Q 008112 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPL 361 (577)
Q Consensus 282 I~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~ 361 (577)
|+...+.|+|.|-+. |.+.++.+.+++..+ +.+++++|-|-- +--..+.++.+-+|.+=|.||.+|- .+
T Consensus 40 I~~L~~aGceiVRva-vp~~~~A~al~~I~~--~~~iPlVADIHF-d~~lAl~a~~~g~dkiRINPGNig~-------~e 108 (346)
T TIGR00612 40 IRALEEAGCDIVRVT-VPDRESAAAFEAIKE--GTNVPLVADIHF-DYRLAALAMAKGVAKVRINPGNIGF-------RE 108 (346)
T ss_pred HHHHHHcCCCEEEEc-CCCHHHHHhHHHHHh--CCCCCEEEeeCC-CcHHHHHHHHhccCeEEECCCCCCC-------HH
Confidence 445567899998776 578888888877654 567999998843 2333456666679999999999976 45
Q ss_pred HHHHHHHHHHHcCCceEEEe--hhhHh--hhcCCCCChHhH-----HHHHHHHHhccceEEeccccCCCCCHHHHHHHHH
Q 008112 362 LQEEIIRTCRSMGKAVIVAT--NMLES--MIVHPTPTRAEV-----SDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 432 (577)
Q Consensus 362 ~qk~Ii~~c~~aGKPvi~AT--q~LeS--M~~~~~PtrAEv-----~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~ 432 (577)
--+.++++|+++|+|+=+-. .-|+. |.+...||..-+ ..+.-+-..|++=+.+|-- ...+...++.-+
T Consensus 109 ~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~K---sSdv~~~i~ayr 185 (346)
T TIGR00612 109 RVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMK---ASDVAETVAAYR 185 (346)
T ss_pred HHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE---cCCHHHHHHHHH
Confidence 66789999999999974322 22221 223334655333 2233356678988888744 345666666666
Q ss_pred HHHHHHhccccCCCCCCCCCcccCCChhHHHHHHHHHHHhhcCceEEE-EcCChHHHHHHHhhCCCCeEEEEcCcHHHhh
Q 008112 433 TVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTSIVV-FTRTGFMAILLSHYRPSGTIFAFTNEKRIQQ 511 (577)
Q Consensus 433 ~I~~~aE~~~~~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~aaIiV-~T~sG~tA~~is~~RP~~PIIAvT~~~~taR 511 (577)
.+.++.+.-+ |...- +.+......+..+++.+.. +++-++--|=| +|..----..++ .++.+
T Consensus 186 ~la~~~dyPL-HlGVT-EAG~~~~G~IKSaigig~L-L~~GIGDTIRVSLT~dP~~EV~va--------------~~IL~ 248 (346)
T TIGR00612 186 LLAERSDYPL-HLGVT-EAGMGVKGIVKSSAGIGIL-LARGIGDTIRVSLTDDPTHEVPVA--------------FEILQ 248 (346)
T ss_pred HHHhhCCCCc-eeccc-cCCCCCCchhHHHHHHHHH-HhhCCCCeEEEECCCCcHHHHHHH--------------HHHHH
Confidence 6655544111 11000 0111122234445554443 44444444444 665543333333 35677
Q ss_pred hhccc-CCeeEEEeccC----CCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Q 008112 512 RLSLY-QGVCPIYMEFS----DDAEETFDNALGLLQKQGMVKEGEEVALLQ 557 (577)
Q Consensus 512 ~L~L~-~GV~Pvl~~~~----~d~d~~i~~al~~l~e~Gllk~GD~VVvv~ 557 (577)
.|.|. +|+.=+-+|.. -|.....++..+.+.. ++..=.|.|..
T Consensus 249 slglr~~g~~iiSCPtCGR~~~dl~~~~~~ve~~l~~---~~~~l~VAVMG 296 (346)
T TIGR00612 249 SLGLRARGVEIVACPSCGRTGFDVEKVVRRVQEALFH---LKTPLKVAVMG 296 (346)
T ss_pred HcCCCcCCCeEEECCCCCCcCCCHHHHHHHHHHHHhc---CCCCCEEEEEC
Confidence 78775 66766666643 3555555555555543 34444555543
No 134
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=80.59 E-value=27 Score=36.92 Aligned_cols=116 Identities=16% Similarity=0.240 Sum_probs=79.0
Q ss_pred EcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHH-H
Q 008112 295 VSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCR-S 372 (577)
Q Consensus 295 ~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~-~ 372 (577)
+.-..++++|.++++.. +++||+|+--- =+...+.+.+. +|.| | ..+..-. -...+...+ +
T Consensus 57 ~~Rm~~p~~I~aIk~~V-----~iPVigk~Rig-h~~Ea~~L~~~GvDiI-----D-~Te~lrp-----ad~~~~~~K~~ 119 (293)
T PRK04180 57 VARMADPKMIEEIMDAV-----SIPVMAKARIG-HFVEAQILEALGVDYI-----D-ESEVLTP-----ADEEYHIDKWD 119 (293)
T ss_pred eeecCCHHHHHHHHHhC-----CCCeEEeehhh-HHHHHHHHHHcCCCEE-----e-ccCCCCc-----hHHHHHHHHHH
Confidence 34557999999888765 68888876432 16666666665 8887 4 2222111 112333333 3
Q ss_pred cCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccc
Q 008112 373 MGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATI 442 (577)
Q Consensus 373 aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~ 442 (577)
.+.|+..- -+.+.+.-+++..|+|.|--+||.-.|+ -+|||+-|+.|-.+.-...
T Consensus 120 f~~~fmad--------------~~~l~EAlrai~~GadmI~Ttge~gtg~-v~~av~h~r~~~~~i~~L~ 174 (293)
T PRK04180 120 FTVPFVCG--------------ARNLGEALRRIAEGAAMIRTKGEAGTGN-VVEAVRHMRQINGEIRRLT 174 (293)
T ss_pred cCCCEEcc--------------CCCHHHHHHHHHCCCCeeeccCCCCCcc-HHHHHHHHHHHHHHHHHHh
Confidence 47786642 2344557789999999999999999998 7899999999998887543
No 135
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=80.59 E-value=34 Score=35.30 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=73.9
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcC-EEEE-cCCCc-cCCCCC
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASD-GAMV-ARGDL-GAELPI 356 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sD-GImI-aRGDL-g~elg~ 356 (577)
+.++.+.+.|+|++.++.. ..++..++.+.+++.|-+...+..=.| ..+.+..|++.+| .|++ ++-.. |..-
T Consensus 106 ~f~~~~~~aGvdgviipDl-p~ee~~~~~~~~~~~gl~~i~lv~P~T--~~eri~~i~~~~~gfiy~vs~~G~TG~~~-- 180 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVADL-PLEESGDLVEAAKKHGVKPIFLVAPNA--DDERLKQIAEKSQGFVYLVSRAGVTGARN-- 180 (256)
T ss_pred HHHHHHHHcCCCEEEECCC-ChHHHHHHHHHHHHCCCcEEEEECCCC--CHHHHHHHHHhCCCCEEEEECCCCCCCcc--
Confidence 4577778999999999976 457888888888887766444443334 4678899999988 4443 33222 1110
Q ss_pred CcHHHHHHHHHHHHHH-cCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 357 EEVPLLQEEIIRTCRS-MGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 357 e~v~~~qk~Ii~~c~~-aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
....-....++..++ .++|+++-.. .=|. .++..+...|+|++...
T Consensus 181 -~~~~~~~~~i~~lr~~~~~pi~vgfG---------I~~~---e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 181 -RAASALNELVKRLKAYSAKPVLVGFG---------ISKP---EQVKQAIDAGADGVIVG 227 (256)
T ss_pred -cCChhHHHHHHHHHhhcCCCEEEeCC---------CCCH---HHHHHHHHcCCCEEEEC
Confidence 111223344444444 4678776432 2233 35777888999999874
No 136
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=80.56 E-value=43 Score=34.92 Aligned_cols=139 Identities=18% Similarity=0.207 Sum_probs=75.2
Q ss_pred HHHHhcC-CCEEEE------------cCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-----cCEEE
Q 008112 283 KFGVDNK-VDFYAV------------SFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGAM 344 (577)
Q Consensus 283 ~~al~~g-vD~I~~------------SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-----sDGIm 344 (577)
+.+.+.| +|+|=+ .+-++++.+.++.+.+.+.- ++.|++||=- .++++.++++. +|+|.
T Consensus 111 ~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~--~~~~~~~~a~~l~~~G~d~i~ 187 (301)
T PRK07259 111 EKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP--NVTDIVEIAKAAEEAGADGLS 187 (301)
T ss_pred HHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC--CchhHHHHHHHHHHcCCCEEE
Confidence 4445677 898854 23344566666666665433 6889999851 23444455442 68876
Q ss_pred E-----cCC-CccC-------CC----CCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHh
Q 008112 345 V-----ARG-DLGA-------EL----PIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVRE 407 (577)
Q Consensus 345 I-----aRG-DLg~-------el----g~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~ 407 (577)
+ ++. |+-. .. |....+...+.+-+..+..++|+|....+. + ..|+..++..
T Consensus 188 ~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~---------~---~~da~~~l~a 255 (301)
T PRK07259 188 LINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGIS---------S---AEDAIEFIMA 255 (301)
T ss_pred EEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCC---------C---HHHHHHHHHc
Confidence 5 211 2210 11 111122233333334444589988755433 3 3567788889
Q ss_pred ccceEEeccccCCCCCHHHHHHHHHHHHHHHhccc
Q 008112 408 GADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATI 442 (577)
Q Consensus 408 G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~ 442 (577)
|+|+|++..---. -| .+..++.+..+..+
T Consensus 256 GAd~V~igr~ll~--~P----~~~~~i~~~l~~~~ 284 (301)
T PRK07259 256 GASAVQVGTANFY--DP----YAFPKIIEGLEAYL 284 (301)
T ss_pred CCCceeEcHHHhc--Cc----HHHHHHHHHHHHHH
Confidence 9999998633222 34 34445555555444
No 137
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=80.52 E-value=24 Score=37.64 Aligned_cols=113 Identities=21% Similarity=0.258 Sum_probs=68.1
Q ss_pred CHHHHHHHHhcCCCEEEEcCCCC-HHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCC
Q 008112 278 DWDDIKFGVDNKVDFYAVSFVKD-AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELP 355 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~SfV~s-a~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg 355 (577)
..+.+...++.++++|.++|=.- .+.++++++ ..+.++.++-|.+. +...++. +|+|++--.+=|-+.+
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~------~gi~v~~~v~s~~~---A~~a~~~G~D~iv~qG~eAGGH~g 172 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPPEVIERLHA------AGIKVIPQVTSVRE---ARKAAKAGADAIVAQGPEAGGHRG 172 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-HHHHHHHHH------TT-EEEEEESSHHH---HHHHHHTT-SEEEEE-TTSSEE--
T ss_pred cccccccccccceEEEEeecccchHHHHHHHHH------cCCccccccCCHHH---HHHhhhcCCCEEEEeccccCCCCC
Confidence 55667888999999999998776 444544443 35889998876654 4444444 9998876445455555
Q ss_pred C-C-cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEe
Q 008112 356 I-E-EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (577)
Q Consensus 356 ~-e-~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imL 414 (577)
. . ....+..++... ..+|||.|--+. .-.+++.++..|+|++++
T Consensus 173 ~~~~~~~~L~~~v~~~---~~iPViaAGGI~------------dg~~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 173 FEVGSTFSLLPQVRDA---VDIPVIAAGGIA------------DGRGIAAALALGADGVQM 218 (330)
T ss_dssp -SSG-HHHHHHHHHHH----SS-EEEESS--------------SHHHHHHHHHCT-SEEEE
T ss_pred ccccceeeHHHHHhhh---cCCcEEEecCcC------------CHHHHHHHHHcCCCEeec
Confidence 1 1 244444555443 349999988765 345688999999999997
No 138
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=80.25 E-value=46 Score=36.98 Aligned_cols=160 Identities=18% Similarity=0.226 Sum_probs=81.6
Q ss_pred EEEEEEecCCCCceEEecc--ccccccccCCCCEEEEe--------CCeEEEEEEEEeCCeE----------EEEEeeCc
Q 008112 195 EFTFTIQRGVGSAECVSVN--YDDFVNDVEVGDMLLVD--------GGMMSLLVKSKTEDSV----------KCEVVDGG 254 (577)
Q Consensus 195 ~v~lt~~~~~~~~~~i~v~--~~~~~~~v~~Gd~I~id--------DG~i~l~V~~v~~~~v----------~~~v~~gG 254 (577)
.++|+..+....-.++... +..+--.++-|+.|++- .|..+|.|.++++..+ +-+....
T Consensus 36 H~YFtLkD~~a~i~~vmf~~~~~~l~f~~~~G~~V~v~g~v~~y~~~G~~ql~v~~i~~~G~G~l~~~~~~lk~~L~~e- 114 (432)
T TIGR00237 36 HWYFTLKDENAQVRCVMFRGNNNRLKFRPQNGQQVLVRGGISVYEPRGDYQIICFEMQPAGEGLLQLAYEQLKEKLAAE- 114 (432)
T ss_pred eEEEEEEcCCcEEEEEEEcChhhCCCCCCCCCCEEEEEEEEEEECCCCcEEEEEEEeccCChHHHHHHHHHHHHHHHHC-
Confidence 5677765443332333322 22333457889987764 7788888888776542 1111223
Q ss_pred EeccCceeeeCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHH
Q 008112 255 ELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLH 334 (577)
Q Consensus 255 ~l~s~Kginlp~~~~~lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~Nld 334 (577)
|+-=|....++|.++.+ + +|+-| .+++-+..+...+........++.-==..+|-....
T Consensus 115 ------Glfd~~~k~~lP~~p~~------------i-~vits--~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~ 173 (432)
T TIGR00237 115 ------GLFDQEYKKPLPHFPKR------------V-GVITS--QTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQ 173 (432)
T ss_pred ------CCCCchhcCCCCCCCCE------------E-EEEeC--CccHHHHHHHHHHHhhCCCceEEEecccccCccHHH
Confidence 33334444555655432 1 12223 455555555555554443323222111222333333
Q ss_pred HHHHh---------cCEEEEcCCCccCCCCCCc-HHHHHHHHHHHHHHcCCceEEE
Q 008112 335 SIITA---------SDGAMVARGDLGAELPIEE-VPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 335 eIl~~---------sDGImIaRGDLg~elg~e~-v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
+|++. .|.|+|+||-=+. |+ ++.=...++++..+...|||.|
T Consensus 174 ~i~~al~~~~~~~~~dviii~RGGGs~----eDL~~Fn~e~~~rai~~~~~Pvis~ 225 (432)
T TIGR00237 174 SIVESIELANTKNECDVLIVGRGGGSL----EDLWSFNDEKVARAIFLSKIPIISA 225 (432)
T ss_pred HHHHHHHHhhcCCCCCEEEEecCCCCH----HHhhhcCcHHHHHHHHcCCCCEEEe
Confidence 33321 5999999993211 11 2222355677778889999987
No 139
>PRK04302 triosephosphate isomerase; Provisional
Probab=80.18 E-value=41 Score=33.63 Aligned_cols=133 Identities=16% Similarity=0.195 Sum_probs=76.9
Q ss_pred HHHHHhcCCCEEEEcCC---CCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCC-CccCCCCC
Q 008112 282 IKFGVDNKVDFYAVSFV---KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARG-DLGAELPI 356 (577)
Q Consensus 282 I~~al~~gvD~I~~SfV---~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRG-DLg~elg~ 356 (577)
++...+.|+|+|.++.- ...+++.+..+...+. .+..|.-+-+ .+.+..+.+. .|.|-+.+- -.|...+.
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~--Gl~~I~~v~~---~~~~~~~~~~~~~~I~~~p~~~igt~~~~ 152 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKL--GLESVVCVNN---PETSAAAAALGPDYVAVEPPELIGTGIPV 152 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHC--CCeEEEEcCC---HHHHHHHhcCCCCEEEEeCccccccCCCC
Confidence 56667899999999986 3334455554444443 4455543333 3445554444 455554443 33443332
Q ss_pred C-cHHHHHHHHHHHHHHc--CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHH
Q 008112 357 E-EVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 431 (577)
Q Consensus 357 e-~v~~~qk~Ii~~c~~a--GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m 431 (577)
. ..+..-+++++..++. +.|++..-. .=+. .++..+...|+|+++..+-...-.-|.+.++-+
T Consensus 153 ~~~~~~~i~~~~~~ir~~~~~~pvi~Ggg---------I~~~---e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~ 218 (223)
T PRK04302 153 SKAKPEVVEDAVEAVKKVNPDVKVLCGAG---------ISTG---EDVKAALELGADGVLLASGVVKAKDPEAALRDL 218 (223)
T ss_pred CcCCHHHHHHHHHHHHhccCCCEEEEECC---------CCCH---HHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHH
Confidence 2 2344455666667763 578775321 2222 456677789999999977666666676666544
No 140
>PLN02826 dihydroorotate dehydrogenase
Probab=80.15 E-value=75 Score=35.22 Aligned_cols=160 Identities=19% Similarity=0.221 Sum_probs=83.6
Q ss_pred ceeeeCCCCCCCCCCCccCHHHHH---HHHhcCCCEEEEc----C------CCCHHHHHHHHHHHHhc--------CCCc
Q 008112 260 RHLNVRGKSATLPSITEKDWDDIK---FGVDNKVDFYAVS----F------VKDAQVVHELKNYLKSC--------GADI 318 (577)
Q Consensus 260 Kginlp~~~~~lp~ltekD~~dI~---~al~~gvD~I~~S----f------V~sa~dv~~lr~~l~~~--------~~~i 318 (577)
-|||+ |+.-+ + +...+|.. ..+...+|++-+. . -+..+.+.++-+.+.+. +.++
T Consensus 189 lgvnI-g~nk~-~---~~~~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~ 263 (409)
T PLN02826 189 LGVNL-GKNKT-S---EDAAADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPP 263 (409)
T ss_pred EEEEe-ccCCC-C---cccHHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCC
Confidence 46677 44321 2 34344443 2233458987653 2 23344555554444321 2358
Q ss_pred eEEEeecChhhHhhHHHHHHh-----cCEEEEc-----C-CCcc-----CCC-CCC---cHHHHHHHHHHHHHHc--CCc
Q 008112 319 HVIVKIESADSIPNLHSIITA-----SDGAMVA-----R-GDLG-----AEL-PIE---EVPLLQEEIIRTCRSM--GKA 376 (577)
Q Consensus 319 ~IiaKIEt~~gv~NldeIl~~-----sDGImIa-----R-GDLg-----~el-g~e---~v~~~qk~Ii~~c~~a--GKP 376 (577)
+|++||=--..-+++++|+.. +|||++. | +|+- .+. |+. -.+...+.+-...++. ..|
T Consensus 264 Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ip 343 (409)
T PLN02826 264 PLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIP 343 (409)
T ss_pred ceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCc
Confidence 999999322222345555542 8999775 3 3331 011 111 1233444444444444 467
Q ss_pred eEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCC-HHHHHHHHHHHHHHHhccc
Q 008112 377 VIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF-PLKAVKVMHTVSLRTEATI 442 (577)
Q Consensus 377 vi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~y-P~eaV~~m~~I~~~aE~~~ 442 (577)
+|-...+. ...|++.++..||+++.+-. +.=.+ | ..+.+|.++.++.+
T Consensus 344 IIgvGGI~------------sg~Da~e~i~AGAs~VQv~T--a~~~~Gp----~~i~~I~~eL~~~l 392 (409)
T PLN02826 344 LVGCGGVS------------SGEDAYKKIRAGASLVQLYT--AFAYEGP----ALIPRIKAELAACL 392 (409)
T ss_pred EEEECCCC------------CHHHHHHHHHhCCCeeeecH--HHHhcCH----HHHHHHHHHHHHHH
Confidence 77766554 34689999999999999852 22121 4 34555666665444
No 141
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=80.09 E-value=24 Score=35.07 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=63.1
Q ss_pred ccCHHHHHHHHhcCCCEEEEcC--CCCHHHHHHHHHHHHhcCCC-ceEEEe-----ecChh----hHhhHHHHH----Hh
Q 008112 276 EKDWDDIKFGVDNKVDFYAVSF--VKDAQVVHELKNYLKSCGAD-IHVIVK-----IESAD----SIPNLHSII----TA 339 (577)
Q Consensus 276 ekD~~dI~~al~~gvD~I~~Sf--V~sa~dv~~lr~~l~~~~~~-i~IiaK-----IEt~~----gv~NldeIl----~~ 339 (577)
-.+.++++.+++.|+|.|.++- .++++.+. ++....+.+ +.+-.. +++.. .-.+..+++ +.
T Consensus 81 I~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~---~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~ 157 (230)
T TIGR00007 81 IRSLEDVEKLLDLGVDRVIIGTAAVENPDLVK---ELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEEL 157 (230)
T ss_pred cCCHHHHHHHHHcCCCEEEEChHHhhCHHHHH---HHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhC
Confidence 3678999999999999887762 34454444 444444422 221111 11110 001222332 23
Q ss_pred -cCEEEEcCCCccC---CCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 340 -SDGAMVARGDLGA---ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 340 -sDGImIaRGDLg~---elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
+|++++. |+.. .-+. ++ +.+-+.++....|++.+..+- +. .|+..+...|+|++|+.
T Consensus 158 g~~~ii~~--~~~~~g~~~g~-~~----~~i~~i~~~~~ipvia~GGi~---------~~---~di~~~~~~Gadgv~ig 218 (230)
T TIGR00007 158 GLEGIIYT--DISRDGTLSGP-NF----ELTKELVKAVNVPVIASGGVS---------SI---DDLIALKKLGVYGVIVG 218 (230)
T ss_pred CCCEEEEE--eecCCCCcCCC-CH----HHHHHHHHhCCCCEEEeCCCC---------CH---HHHHHHHHCCCCEEEEe
Confidence 7877754 2222 2232 22 122223344679998765533 44 45556667899999986
Q ss_pred c
Q 008112 416 G 416 (577)
Q Consensus 416 ~ 416 (577)
.
T Consensus 219 ~ 219 (230)
T TIGR00007 219 K 219 (230)
T ss_pred H
Confidence 3
No 142
>PRK08227 autoinducer 2 aldolase; Validated
Probab=79.93 E-value=20 Score=37.32 Aligned_cols=139 Identities=18% Similarity=0.168 Sum_probs=76.8
Q ss_pred HHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceE
Q 008112 333 LHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAV 412 (577)
Q Consensus 333 ldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~i 412 (577)
+..++.-+|+++.-+|=+....+ ...++|.|+-..-=.++. .+.+...-+++|-.|++.|+|+|
T Consensus 48 ~~~i~~~~da~~~~~G~~~~~~~---------------~~~~~~lil~ls~~t~~~-~~~~~~~l~~sVeeAvrlGAdAV 111 (264)
T PRK08227 48 IAPLFPYADVLMCTRGILRSVVP---------------PATNKPVVLRASGGNSIL-KELSNEAVAVDMEDAVRLNACAV 111 (264)
T ss_pred HHHHhhcCCEEEeChhHHHhccc---------------ccCCCcEEEEEcCCCCCC-CCCCcccceecHHHHHHCCCCEE
Confidence 34444448888876553322111 224577776433212222 12345566788999999999999
Q ss_pred EeccccCCC-CCHHHHHHHHHHHHHHHhccc-cCCCCCCCCCcccCCChhHHHHHHHHHHHhhcCceEEEEcCCh-HHHH
Q 008112 413 MLSGETAHG-KFPLKAVKVMHTVSLRTEATI-TGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTSIVVFTRTG-FMAI 489 (577)
Q Consensus 413 mLs~ETa~G-~yP~eaV~~m~~I~~~aE~~~-~~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~aaIiV~T~sG-~tA~ 489 (577)
..+- ..| .+=.+.++.+.+++++++++- +.-..++ .+.... +..+ +..+|+++|-+++|-||=..-+| ..++
T Consensus 112 ~~~v--~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~p-rG~~~~-~~~~-~ia~aaRiaaELGADiVK~~y~~~~f~~ 186 (264)
T PRK08227 112 AAQV--FIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTA-VGKDMV-RDAR-YFSLATRIAAEMGAQIIKTYYVEEGFER 186 (264)
T ss_pred EEEE--ecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEec-CCCCcC-chHH-HHHHHHHHHHHHcCCEEecCCCHHHHHH
Confidence 8752 233 334567777888888888651 1111111 111112 2344 55578889999999444433345 4445
Q ss_pred HHH
Q 008112 490 LLS 492 (577)
Q Consensus 490 ~is 492 (577)
.++
T Consensus 187 vv~ 189 (264)
T PRK08227 187 ITA 189 (264)
T ss_pred HHH
Confidence 554
No 143
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=79.38 E-value=4.2 Score=44.00 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=42.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHH
Q 008112 108 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (577)
Q Consensus 108 r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 158 (577)
.+-.+-+.+||.-++.|..+.|+++|+|++=|..+||..+...++++.||+
T Consensus 95 ~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~ 145 (352)
T PF00478_consen 95 GRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKK 145 (352)
T ss_dssp SCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHH
Confidence 456778889999889999999999999999999999999888777777765
No 144
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=79.08 E-value=66 Score=33.45 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-----cCEEEEc-----CC-Ccc-------CCC----CC
Q 008112 299 KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGAMVA-----RG-DLG-------AEL----PI 356 (577)
Q Consensus 299 ~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-----sDGImIa-----RG-DLg-------~el----g~ 356 (577)
.+++.+.++.+.+.+. .+++|.+||- ..+++..++++. +|+|.+. +. |+. ... |.
T Consensus 140 ~~~~~~~eiv~~vr~~-~~~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~ 216 (300)
T TIGR01037 140 QDPELSADVVKAVKDK-TDVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGP 216 (300)
T ss_pred cCHHHHHHHHHHHHHh-cCCCEEEECC--CChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccch
Confidence 5666666666666543 2578999994 133444444432 7999873 21 211 111 11
Q ss_pred CcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHH
Q 008112 357 EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSL 436 (577)
Q Consensus 357 e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~ 436 (577)
...+...+.+-+..+..++|+|....+. + ..|+..++..|+|++|+..- .=..| .+.+++.+
T Consensus 217 ~~~~~~l~~v~~i~~~~~ipvi~~GGI~---------s---~~da~~~l~~GAd~V~igr~--~l~~p----~~~~~i~~ 278 (300)
T TIGR01037 217 AIKPIALRMVYDVYKMVDIPIIGVGGIT---------S---FEDALEFLMAGASAVQVGTA--VYYRG----FAFKKIIE 278 (300)
T ss_pred hhhHHHHHHHHHHHhcCCCCEEEECCCC---------C---HHHHHHHHHcCCCceeecHH--HhcCc----hHHHHHHH
Confidence 1223334444444555689988755433 2 35677888899999999632 22345 34444555
Q ss_pred HHhccc
Q 008112 437 RTEATI 442 (577)
Q Consensus 437 ~aE~~~ 442 (577)
+.++.+
T Consensus 279 ~l~~~~ 284 (300)
T TIGR01037 279 GLIAFL 284 (300)
T ss_pred HHHHHH
Confidence 555444
No 145
>PRK08999 hypothetical protein; Provisional
Probab=78.72 E-value=38 Score=35.34 Aligned_cols=42 Identities=10% Similarity=0.053 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHhcC
Q 008112 123 REMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSK 164 (577)
Q Consensus 123 ~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~ 164 (577)
.+.+++++..|++.+-+-..|.+.++..+.++.+++..++++
T Consensus 147 ~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~~~~ 188 (312)
T PRK08999 147 LARLERALAAGIRLIQLRAPQLPPAAYRALARAALGLCRRAG 188 (312)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 367889999999999999999999988999988888877665
No 146
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=78.71 E-value=75 Score=33.53 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=87.0
Q ss_pred HHHHHHHhcCCCEEEE-----c---------CCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEE
Q 008112 280 DDIKFGVDNKVDFYAV-----S---------FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAM 344 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~-----S---------fV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGIm 344 (577)
+.-+-|-+.|+-.|++ + -.++++||+++++.. +++||+++---- +...+++.++ +|.|
T Consensus 19 ~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V-----~iPVIGi~K~~~-~~Ea~~L~eaGvDiI- 91 (283)
T cd04727 19 EQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAV-----SIPVMAKVRIGH-FVEAQILEALGVDMI- 91 (283)
T ss_pred HHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhC-----CCCeEEeeehhH-HHHHHHHHHcCCCEE-
Confidence 3344455666666665 2 345777888887755 789999775322 7777888777 8887
Q ss_pred EcCCCccCCCCCCcHHHHHHHHHHHHHH-cCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCC
Q 008112 345 VARGDLGAELPIEEVPLLQEEIIRTCRS-MGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 423 (577)
Q Consensus 345 IaRGDLg~elg~e~v~~~qk~Ii~~c~~-aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~y 423 (577)
| ..+-+-. + ..++...+. ++.|++. .-+.+.+.-+++..|+|.|--+.|--.| +
T Consensus 92 ----D-aT~r~rP-~----~~~~~~iK~~~~~l~MA--------------D~stleEal~a~~~Gad~I~TTl~gyT~-~ 146 (283)
T cd04727 92 ----D-ESEVLTP-A----DEEHHIDKHKFKVPFVC--------------GARNLGEALRRISEGAAMIRTKGEAGTG-N 146 (283)
T ss_pred ----e-ccCCCCc-H----HHHHHHHHHHcCCcEEc--------------cCCCHHHHHHHHHCCCCEEEecCCCCCC-c
Confidence 4 2222211 1 444444444 4777664 2234455778999999999988776666 6
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 008112 424 PLKAVKVMHTVSLRTEATI 442 (577)
Q Consensus 424 P~eaV~~m~~I~~~aE~~~ 442 (577)
-.|+|+-+++|-.++....
T Consensus 147 ~~~~~~~~~~i~~~i~~~~ 165 (283)
T cd04727 147 VVEAVRHMRAVNGEIRKLQ 165 (283)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7899999999988888543
No 147
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=78.62 E-value=41 Score=35.30 Aligned_cols=132 Identities=18% Similarity=0.186 Sum_probs=71.0
Q ss_pred CCCCccCHHHH--------HHHHhcCCCEEEEcCC-------------CCHHH------------HHHHHHHHH-hcCCC
Q 008112 272 PSITEKDWDDI--------KFGVDNKVDFYAVSFV-------------KDAQV------------VHELKNYLK-SCGAD 317 (577)
Q Consensus 272 p~ltekD~~dI--------~~al~~gvD~I~~SfV-------------~sa~d------------v~~lr~~l~-~~~~~ 317 (577)
..+|..|++.+ +.+.+.|+|+|=+-.- +...| +.++.+.+. ..+.+
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d 208 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPD 208 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 46788887776 4567789999866432 22111 222222222 23678
Q ss_pred ceEEEeecChh----------hHhhHHHHHHh-cCEEEEcCCCccCCCCC----CcHHHHHHHHHHH-HHHcCCceEEEe
Q 008112 318 IHVIVKIESAD----------SIPNLHSIITA-SDGAMVARGDLGAELPI----EEVPLLQEEIIRT-CRSMGKAVIVAT 381 (577)
Q Consensus 318 i~IiaKIEt~~----------gv~NldeIl~~-sDGImIaRGDLg~elg~----e~v~~~qk~Ii~~-c~~aGKPvi~AT 381 (577)
..|..||--.+ +++-+..+.+. .|.|-+..|+..-.... ..-.......++. .+..++|++...
T Consensus 209 ~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G 288 (327)
T cd02803 209 FPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVG 288 (327)
T ss_pred ceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeC
Confidence 88999986432 22222333333 79998887764321110 0001112222222 233478988754
Q ss_pred hhhHhhhcCCCCChHhHHHHHHHHHh-ccceEEec
Q 008112 382 NMLESMIVHPTPTRAEVSDIAIAVRE-GADAVMLS 415 (577)
Q Consensus 382 q~LeSM~~~~~PtrAEv~Dv~nav~~-G~D~imLs 415 (577)
.+- |. .++..++.. |+|.|++.
T Consensus 289 gi~---------t~---~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 289 GIR---------DP---EVAEEILAEGKADLVALG 311 (327)
T ss_pred CCC---------CH---HHHHHHHHCCCCCeeeec
Confidence 432 33 345577777 79999985
No 148
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=78.42 E-value=86 Score=32.31 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=60.6
Q ss_pred CCCCccCHH-HHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhH----------hhHHHHHHh-
Q 008112 272 PSITEKDWD-DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI----------PNLHSIITA- 339 (577)
Q Consensus 272 p~ltekD~~-dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv----------~NldeIl~~- 339 (577)
|.-+..|.+ .+..+++.|+|.|+++. --+...++.+ +.++.++.+|++..++ ...++.++.
T Consensus 34 p~~~~~d~~~~~~~a~~~~~~av~v~~----~~~~~~~~~~---~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~G 106 (267)
T PRK07226 34 PIDGLVDIRDTVNKVAEGGADAVLMHK----GLARHGHRGY---GRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLG 106 (267)
T ss_pred CCcCcCCHHHHHHHHHhcCCCEEEeCH----hHHhhhcccc---CCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcC
Confidence 445777755 45678899999999873 3333333333 3457789998853333 124555554
Q ss_pred cCEEEEc--CCCccCCCCCCcHHHHHHHHHHHHHHcCCceEE
Q 008112 340 SDGAMVA--RGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIV 379 (577)
Q Consensus 340 sDGImIa--RGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ 379 (577)
+|.+.+- -|++ ....+...-+++.+.|++.|.|+++
T Consensus 107 ad~v~~~~~~g~~----~~~~~~~~~~~v~~~~~~~g~pl~v 144 (267)
T PRK07226 107 ADAVSVHVNVGSE----TEAEMLEDLGEVAEECEEWGMPLLA 144 (267)
T ss_pred CCEEEEEEecCCh----hHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 6654432 1211 1235666667888999999999887
No 149
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=78.40 E-value=67 Score=31.07 Aligned_cols=137 Identities=20% Similarity=0.206 Sum_probs=77.0
Q ss_pred HHHHHHHHhcCCCEEEE-----cCCCC-HHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCcc
Q 008112 279 WDDIKFGVDNKVDFYAV-----SFVKD-AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLG 351 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~-----SfV~s-a~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg 351 (577)
.++++.+.+.|+|.|-+ +|+.+ .-....++++-...+..+.+..+....+ +-++.+.+. +||+.+--
T Consensus 14 ~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~--~~~~~~~~~gadgv~vh~---- 87 (210)
T TIGR01163 14 GEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPD--RYIEDFAEAGADIITVHP---- 87 (210)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHH--HHHHHHHHcCCCEEEEcc----
Confidence 35667778899999988 36654 3223333333222222333446666542 445666655 89988831
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEecc--ccCCC-CCHHHHH
Q 008112 352 AELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG--ETAHG-KFPLKAV 428 (577)
Q Consensus 352 ~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~--ETa~G-~yP~eaV 428 (577)
... ....+.++.++++|...++... + -|..| ....+..++|.+.+.+ .+..| .++...+
T Consensus 88 ---~~~---~~~~~~~~~~~~~g~~~~~~~~--------~-~t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~ 149 (210)
T TIGR01163 88 ---EAS---EHIHRLLQLIKDLGAKAGIVLN--------P-ATPLE---FLEYVLPDVDLVLLMSVNPGFGGQKFIPDTL 149 (210)
T ss_pred ---CCc---hhHHHHHHHHHHcCCcEEEEEC--------C-CCCHH---HHHHHHhhCCEEEEEEEcCCCCcccccHHHH
Confidence 111 2235667888999988776431 1 12222 3455567889887622 12233 5667777
Q ss_pred HHHHHHHHHHh
Q 008112 429 KVMHTVSLRTE 439 (577)
Q Consensus 429 ~~m~~I~~~aE 439 (577)
+.++++.+...
T Consensus 150 ~~i~~i~~~~~ 160 (210)
T TIGR01163 150 EKIREVRKMID 160 (210)
T ss_pred HHHHHHHHHHH
Confidence 77777765544
No 150
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=78.39 E-value=66 Score=33.20 Aligned_cols=131 Identities=17% Similarity=0.217 Sum_probs=78.1
Q ss_pred HHHHHHHhcCCCEEEEcCCC-CHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCC
Q 008112 280 DDIKFGVDNKVDFYAVSFVK-DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIE 357 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~-sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e 357 (577)
..+..+.+.|+|+|.+---- +.+++.++.++....| ..+++-+-|.+-+ +...+. +|.|.+..-||... ..
T Consensus 124 ~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG--l~~lvevh~~~E~---~~A~~~gadiIgin~rdl~~~-~~- 196 (260)
T PRK00278 124 YQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLG--LDVLVEVHDEEEL---ERALKLGAPLIGINNRNLKTF-EV- 196 (260)
T ss_pred HHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC--CeEEEEeCCHHHH---HHHHHcCCCEEEECCCCcccc-cC-
Confidence 35788899999998765333 6678888888887654 4455544454433 333333 88888887677433 11
Q ss_pred cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHH
Q 008112 358 EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 431 (577)
Q Consensus 358 ~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m 431 (577)
+ ...-.+++.... ...|+|.-.. .=|. .|+..+...|+|++++...-..-..|.++++-+
T Consensus 197 d-~~~~~~l~~~~p-~~~~vIaegG---------I~t~---ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l 256 (260)
T PRK00278 197 D-LETTERLAPLIP-SDRLVVSESG---------IFTP---EDLKRLAKAGADAVLVGESLMRADDPGAALREL 256 (260)
T ss_pred C-HHHHHHHHHhCC-CCCEEEEEeC---------CCCH---HHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHH
Confidence 1 122233333221 1246554333 2233 346677778999999865555567788887754
No 151
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=78.23 E-value=81 Score=32.21 Aligned_cols=136 Identities=13% Similarity=0.055 Sum_probs=85.7
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCC--CceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCC
Q 008112 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA--DIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPI 356 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~--~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~ 356 (577)
.+.+..-.+.|+|.|.+- +++..++.+.-+.+++.|. +..+..+=+| -++.++.++...|.|+| ++++=|+
T Consensus 81 ~~~i~~~~~aGad~It~H-~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~T--p~~~i~~~l~~vD~VLi----MtV~PGf 153 (228)
T PRK08091 81 FEVAKACVAAGADIVTLQ-VEQTHDLALTIEWLAKQKTTVLIGLCLCPET--PISLLEPYLDQIDLIQI----LTLDPRT 153 (228)
T ss_pred HHHHHHHHHhCCCEEEEc-ccCcccHHHHHHHHHHCCCCceEEEEECCCC--CHHHHHHHHhhcCEEEE----EEECCCC
Confidence 345666678999988765 4766778888888899888 7788888888 57899999999999988 5555554
Q ss_pred C---cHHHHHHHHHHH---HHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCC--CCHHHHH
Q 008112 357 E---EVPLLQEEIIRT---CRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHG--KFPLKAV 428 (577)
Q Consensus 357 e---~v~~~qk~Ii~~---c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G--~yP~eaV 428 (577)
. -.+..-++|-+. -.++|.-+.+.. .. .=+. .-+..+...|+|.+.+. |++- .-|.+.+
T Consensus 154 gGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV-------DG-GI~~---~ti~~l~~aGaD~~V~G--SalF~~~d~~~~i 220 (228)
T PRK08091 154 GTKAPSDLILDRVIQVENRLGNRRVEKLISI-------DG-SMTL---ELASYLKQHQIDWVVSG--SALFSQGELKTTL 220 (228)
T ss_pred CCccccHHHHHHHHHHHHHHHhcCCCceEEE-------EC-CCCH---HHHHHHHHCCCCEEEEC--hhhhCCCCHHHHH
Confidence 4 233333333322 123342221110 11 1111 12446778999988875 3442 2367777
Q ss_pred HHHHHH
Q 008112 429 KVMHTV 434 (577)
Q Consensus 429 ~~m~~I 434 (577)
+.++..
T Consensus 221 ~~l~~~ 226 (228)
T PRK08091 221 KEWKSS 226 (228)
T ss_pred HHHHHh
Confidence 776653
No 152
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=77.88 E-value=44 Score=38.23 Aligned_cols=171 Identities=15% Similarity=0.119 Sum_probs=104.5
Q ss_pred CceeeeCCCCCCCCCCCccCHHHHHH-HHhcCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCceEEEeec-ChhhH-----
Q 008112 259 RRHLNVRGKSATLPSITEKDWDDIKF-GVDNKVDFYAVSF-VKDAQVVHELKNYLKSCGADIHVIVKIE-SADSI----- 330 (577)
Q Consensus 259 ~Kginlp~~~~~lp~ltekD~~dI~~-al~~gvD~I~~Sf-V~sa~dv~~lr~~l~~~~~~i~IiaKIE-t~~gv----- 330 (577)
|-|-.-||.. +|..++-.|.. -.+.|+|.|=+.| .-|+.|...++.+....-++..|.+-.= ....+
T Consensus 10 RDG~Q~~g~~-----~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d 84 (526)
T TIGR00977 10 RDGAQREGVS-----FSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEED 84 (526)
T ss_pred CCCCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchH
Confidence 3344445543 35556555544 4568999996643 3478899888877643223456666552 22222
Q ss_pred hhHHHHHHh-cCEEE--EcCCCccCC----CCCCcHHHHHHHHHHHHHHcCCceE-EEehhhHhhhcCCCCChHhHHHHH
Q 008112 331 PNLHSIITA-SDGAM--VARGDLGAE----LPIEEVPLLQEEIIRTCRSMGKAVI-VATNMLESMIVHPTPTRAEVSDIA 402 (577)
Q Consensus 331 ~NldeIl~~-sDGIm--IaRGDLg~e----lg~e~v~~~qk~Ii~~c~~aGKPvi-~ATq~LeSM~~~~~PtrAEv~Dv~ 402 (577)
..++..+.. .+.|. +.--|+-.+ ...+++...-.+.++.++.+|..|. .++...+.. +-+...+.+++
T Consensus 85 ~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~----r~~~~~l~~~~ 160 (526)
T TIGR00977 85 KMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGY----KANPEYALATL 160 (526)
T ss_pred HHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecc----cCCHHHHHHHH
Confidence 234444444 44333 333333221 2334666666788899999999874 354443321 12345556666
Q ss_pred HH-HHhccceEEeccccCCCCCHHHHHHHHHHHHHHHh
Q 008112 403 IA-VREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTE 439 (577)
Q Consensus 403 na-v~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE 439 (577)
.+ ...|+|.+.|. +|.=+..|.+.-+.+..+.+...
T Consensus 161 ~~a~~aGad~i~i~-DTvG~~~P~~v~~li~~l~~~~~ 197 (526)
T TIGR00977 161 ATAQQAGADWLVLC-DTNGGTLPHEISEITTKVKRSLK 197 (526)
T ss_pred HHHHhCCCCeEEEe-cCCCCcCHHHHHHHHHHHHHhCC
Confidence 64 55699999997 99999999999999999987654
No 153
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=77.78 E-value=15 Score=37.06 Aligned_cols=145 Identities=20% Similarity=0.220 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhh----------HhhHHHHHHh-cCEEEEc-
Q 008112 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS----------IPNLHSIITA-SDGAMVA- 346 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~g----------v~NldeIl~~-sDGImIa- 346 (577)
.+.++.+++.+++.|+++. .-+...++.+...+..+.++.....-.. +...++.++. +|+|-+-
T Consensus 22 ~~~~~~a~~~~~~av~v~p----~~~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi 97 (236)
T PF01791_consen 22 KKLCREAIEYGFDAVCVTP----GYVKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVI 97 (236)
T ss_dssp HHHHHHHHHHTSSEEEEEG----GGHHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHHHhCCCEEEECH----HHHHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeec
Confidence 4556788899999998873 4566666666443446777777764321 3455555554 6654432
Q ss_pred -CCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHh---------HHHHHH-HHHhccceEEec
Q 008112 347 -RGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAE---------VSDIAI-AVREGADAVMLS 415 (577)
Q Consensus 347 -RGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAE---------v~Dv~n-av~~G~D~imLs 415 (577)
.|-++-+- ...+.+--+++.+.|+.+|.|+|+= +.|+..| +...+. +...|+|.+=.+
T Consensus 98 ~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIlE----------~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~ 166 (236)
T PF01791_consen 98 NYGALGSGN-EDEVIEEIAAVVEECHKYGLKVILE----------PYLRGEEVADEKKPDLIARAARIAAELGADFVKTS 166 (236)
T ss_dssp EHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEEE----------ECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE
T ss_pred ccccccccc-HHHHHHHHHHHHHHHhcCCcEEEEE----------EecCchhhcccccHHHHHHHHHHHHHhCCCEEEec
Confidence 21121111 2355666678999999999999873 3455555 333333 678999999876
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHh
Q 008112 416 GETAHGKFPLKAVKVMHTVSLRTE 439 (577)
Q Consensus 416 ~ETa~G~yP~eaV~~m~~I~~~aE 439 (577)
.=.. ...-.+.++.|++++..+.
T Consensus 167 tg~~-~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 167 TGKP-VGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp -SSS-SCSHHHHHHHHHHHHHTHS
T ss_pred CCcc-ccccHHHHHHHHHHHHhcC
Confidence 3333 4556788999988888665
No 154
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=77.63 E-value=20 Score=36.10 Aligned_cols=108 Identities=15% Similarity=0.173 Sum_probs=71.7
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhc-C--EEEEcCCC--------ccCCCCCC--c
Q 008112 292 FYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITAS-D--GAMVARGD--------LGAELPIE--E 358 (577)
Q Consensus 292 ~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~s-D--GImIaRGD--------Lg~elg~e--~ 358 (577)
.+.+=...++++...+.+.+.+.|-... =.-.-|+.+++.+.++.+.. | .++||-|= ...+.|.+ -
T Consensus 15 vi~vir~~~~~~a~~~~~al~~~Gi~~i-Eit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 15 VVAVVRGESKEEALKISLAVIKGGIKAI-EVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV 93 (213)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEE-EEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE
Confidence 3455556788888888888877665422 22334888888888888764 2 48888651 12222211 1
Q ss_pred HHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEe
Q 008112 359 VPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (577)
Q Consensus 359 v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imL 414 (577)
-|....++++.|+++|.|++= .-.-.+++..+...|+|.+-+
T Consensus 94 sP~~~~~v~~~~~~~~i~~iP--------------G~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 94 SPSFNRETAKICNLYQIPYLP--------------GCMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred CCCCCHHHHHHHHHcCCCEEC--------------CcCCHHHHHHHHHcCCCEEEE
Confidence 334557899999999999883 222234577888999999998
No 155
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=77.55 E-value=52 Score=34.51 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=85.8
Q ss_pred CccCHHHH-HHHHhcCCCEEEE-cCCCC-----HHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEE-
Q 008112 275 TEKDWDDI-KFGVDNKVDFYAV-SFVKD-----AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMV- 345 (577)
Q Consensus 275 tekD~~dI-~~al~~gvD~I~~-SfV~s-----a~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImI- 345 (577)
+..++..| +.-.+.|++.|=+ ||+.. ..|-.++.+.+... .+..+.+..-+.++++. -++. .|.|.+
T Consensus 24 s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~-~~~~~~~l~~~~~~ie~---A~~~g~~~v~i~ 99 (287)
T PRK05692 24 PTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRR-PGVTYAALTPNLKGLEA---ALAAGADEVAVF 99 (287)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhcc-CCCeEEEEecCHHHHHH---HHHcCCCEEEEE
Confidence 44454444 4455789999865 45432 12223433334322 23444444434444433 2332 554433
Q ss_pred -cCCCc----cCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCC---CCChHhHHHHHH-HHHhccceEEecc
Q 008112 346 -ARGDL----GAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHP---TPTRAEVSDIAI-AVREGADAVMLSG 416 (577)
Q Consensus 346 -aRGDL----g~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~---~PtrAEv~Dv~n-av~~G~D~imLs~ 416 (577)
.-.|+ -.....++.....+.+++.++++|..+...-.+- ...| .-+.+.+.+++. +...|+|.|.|.
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~- 175 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCV---LGCPYEGEVPPEAVADVAERLFALGCYEISLG- 175 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEE---ecCCCCCCCCHHHHHHHHHHHHHcCCcEEEec-
Confidence 22222 1112233455556789999999999874211100 0111 123445555554 667899999995
Q ss_pred ccCCCCCHHHHHHHHHHHHHHH
Q 008112 417 ETAHGKFPLKAVKVMHTVSLRT 438 (577)
Q Consensus 417 ETa~G~yP~eaV~~m~~I~~~a 438 (577)
+|.=--.|.+.-+++..+.++.
T Consensus 176 DT~G~~~P~~v~~lv~~l~~~~ 197 (287)
T PRK05692 176 DTIGVGTPGQVRAVLEAVLAEF 197 (287)
T ss_pred cccCccCHHHHHHHHHHHHHhC
Confidence 8888889999999988887653
No 156
>TIGR03586 PseI pseudaminic acid synthase.
Probab=77.52 E-value=38 Score=36.39 Aligned_cols=63 Identities=21% Similarity=0.341 Sum_probs=44.0
Q ss_pred hHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHH-hcc
Q 008112 332 NLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVR-EGA 409 (577)
Q Consensus 332 NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~-~G~ 409 (577)
.+|.+... +|.+=||-+|+. .+ .+++.+.+.||||++.|.|- |-+|+...+..+. .|.
T Consensus 102 svd~l~~~~v~~~KI~S~~~~------n~-----~LL~~va~~gkPvilstG~~---------t~~Ei~~Av~~i~~~g~ 161 (327)
T TIGR03586 102 AVDFLESLDVPAYKIASFEIT------DL-----PLIRYVAKTGKPIIMSTGIA---------TLEEIQEAVEACREAGC 161 (327)
T ss_pred HHHHHHHcCCCEEEECCcccc------CH-----HHHHHHHhcCCcEEEECCCC---------CHHHHHHHHHHHHHCCC
Confidence 33444445 788889988873 22 24556777899999998863 7899999998886 566
Q ss_pred ceEEe
Q 008112 410 DAVML 414 (577)
Q Consensus 410 D~imL 414 (577)
+-++|
T Consensus 162 ~~i~L 166 (327)
T TIGR03586 162 KDLVL 166 (327)
T ss_pred CcEEE
Confidence 43444
No 157
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=77.31 E-value=12 Score=37.57 Aligned_cols=100 Identities=18% Similarity=0.242 Sum_probs=56.5
Q ss_pred HHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHH
Q 008112 284 FGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLL 362 (577)
Q Consensus 284 ~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~ 362 (577)
..++.|++.+=++| +++.-.+.+++..++. .++.|-| =|..-.+.++..++. ++.| |.++ .
T Consensus 28 al~~~Gi~~iEit~-~t~~a~~~i~~l~~~~-~~~~vGA--GTVl~~~~a~~a~~aGA~Fi-vsP~-------------~ 89 (204)
T TIGR01182 28 ALIEGGLRVLEVTL-RTPVALDAIRLLRKEV-PDALIGA--GTVLNPEQLRQAVDAGAQFI-VSPG-------------L 89 (204)
T ss_pred HHHHcCCCEEEEeC-CCccHHHHHHHHHHHC-CCCEEEE--EeCCCHHHHHHHHHcCCCEE-ECCC-------------C
Confidence 34456666666666 5555555444443332 2333222 222233334444443 4433 2322 2
Q ss_pred HHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 363 QEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 363 qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
...+++.|+++|.|++- ..-|. +++..|...|+|.+=+=
T Consensus 90 ~~~v~~~~~~~~i~~iP-----------G~~Tp---tEi~~A~~~Ga~~vKlF 128 (204)
T TIGR01182 90 TPELAKHAQDHGIPIIP-----------GVATP---SEIMLALELGITALKLF 128 (204)
T ss_pred CHHHHHHHHHcCCcEEC-----------CCCCH---HHHHHHHHCCCCEEEEC
Confidence 45899999999999872 12233 44889999999998884
No 158
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=77.31 E-value=31 Score=36.14 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCCEEEEcCCCC--------HHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEc-CCC
Q 008112 280 DDIKFGVDNKVDFYAVSFVKD--------AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVA-RGD 349 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~s--------a~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIa-RGD 349 (577)
+.++.+.+.|+|.|.+.+ .. .+.++++++.+ +.++++|.- ...+......+. +|+|.+. +|
T Consensus 133 ~~i~~~~~~g~~~i~l~~-~~p~~~~~~~~~~i~~l~~~~-----~~pvivK~v--~s~~~a~~a~~~G~d~I~v~~~g- 203 (299)
T cd02809 133 DLLRRAEAAGYKALVLTV-DTPVLGRRLTWDDLAWLRSQW-----KGPLILKGI--LTPEDALRAVDAGADGIVVSNHG- 203 (299)
T ss_pred HHHHHHHHcCCCEEEEec-CCCCCCCCCCHHHHHHHHHhc-----CCCEEEeec--CCHHHHHHHHHCCCCEEEEcCCC-
Confidence 446666778999887643 22 25666666543 367888841 233444444444 8998884 22
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHc--CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEecc
Q 008112 350 LGAELPIEEVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG 416 (577)
Q Consensus 350 Lg~elg~e~v~~~qk~Ii~~c~~a--GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ 416 (577)
|..+.. ..+ ....+.+.++.. ..|+|.+..+- ...|+..++..|+|++|+..
T Consensus 204 -G~~~~~-g~~-~~~~l~~i~~~~~~~ipvia~GGI~------------~~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 204 -GRQLDG-APA-TIDALPEIVAAVGGRIEVLLDGGIR------------RGTDVLKALALGADAVLIGR 257 (299)
T ss_pred -CCCCCC-CcC-HHHHHHHHHHHhcCCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEcH
Confidence 222210 111 111222222223 48888765433 23679999999999999853
No 159
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=76.95 E-value=65 Score=32.12 Aligned_cols=194 Identities=17% Similarity=0.173 Sum_probs=106.8
Q ss_pred CCccCHHHH-HHHHhcCCCEEEEc-CCCCHHHHHHHHHHHHhcCCCceEEEeecC-hhhHhh-HHHHHHh-cCEEEE--c
Q 008112 274 ITEKDWDDI-KFGVDNKVDFYAVS-FVKDAQVVHELKNYLKSCGADIHVIVKIES-ADSIPN-LHSIITA-SDGAMV--A 346 (577)
Q Consensus 274 ltekD~~dI-~~al~~gvD~I~~S-fV~sa~dv~~lr~~l~~~~~~i~IiaKIEt-~~gv~N-ldeIl~~-sDGImI--a 346 (577)
++..++..| +...+.|+|.|=+. ..-+.++.+.++.+.+.... ..+.+..-. .+.++. ++.+... .|.+.+ .
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~ 89 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN-ARLQALCRANEEDIERAVEAAKEAGIDIIRIFIS 89 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS-SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc-cccceeeeehHHHHHHHHHhhHhccCCEEEecCc
Confidence 344555544 44457899998887 45677777777766544322 343333322 122232 2222223 665554 3
Q ss_pred CCCccCC----CCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHH-hccceEEeccccCCC
Q 008112 347 RGDLGAE----LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVR-EGADAVMLSGETAHG 421 (577)
Q Consensus 347 RGDLg~e----lg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~-~G~D~imLs~ETa~G 421 (577)
-.|+-.. ...++......+++..+++.|..+.+... .....+.+++.+++..+. .|+|.+.|. +|.=.
T Consensus 90 ~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~i~l~-Dt~G~ 162 (237)
T PF00682_consen 90 VSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE------DASRTDPEELLELAEALAEAGADIIYLA-DTVGI 162 (237)
T ss_dssp TSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET------TTGGSSHHHHHHHHHHHHHHT-SEEEEE-ETTS-
T ss_pred ccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc------ccccccHHHHHHHHHHHHHcCCeEEEee-CccCC
Confidence 3331110 11223455567789999999999976543 233567788888888665 499999995 88888
Q ss_pred CCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccCCChhHHHHHHHHHHHhhcCceEEEEcCCh
Q 008112 422 KFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTSIVVFTRTG 485 (577)
Q Consensus 422 ~yP~eaV~~m~~I~~~aE~~~~~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~aaIiV~T~sG 485 (577)
-.|.+.-+.++.+-++.-. .. ++-...++. .+|.+....|-+.++-+|=.|-.|
T Consensus 163 ~~P~~v~~lv~~~~~~~~~-~~-------l~~H~Hnd~--Gla~An~laA~~aGa~~id~t~~G 216 (237)
T PF00682_consen 163 MTPEDVAELVRALREALPD-IP-------LGFHAHNDL--GLAVANALAALEAGADRIDGTLGG 216 (237)
T ss_dssp S-HHHHHHHHHHHHHHSTT-SE-------EEEEEBBTT--S-HHHHHHHHHHTT-SEEEEBGGG
T ss_pred cCHHHHHHHHHHHHHhccC-Ce-------EEEEecCCc--cchhHHHHHHHHcCCCEEEccCcc
Confidence 8899888887777666553 11 111122233 234444666666777444444333
No 160
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=76.74 E-value=73 Score=34.49 Aligned_cols=154 Identities=14% Similarity=0.092 Sum_probs=92.1
Q ss_pred CCccCHHHHH-HHHhcCCCEEEEcCCC-CHHHHHHHHHHHHhcCCCceEEEee-cChhhHhhHHHHHHh-cCEEEE--cC
Q 008112 274 ITEKDWDDIK-FGVDNKVDFYAVSFVK-DAQVVHELKNYLKSCGADIHVIVKI-ESADSIPNLHSIITA-SDGAMV--AR 347 (577)
Q Consensus 274 ltekD~~dI~-~al~~gvD~I~~SfV~-sa~dv~~lr~~l~~~~~~i~IiaKI-Et~~gv~NldeIl~~-sDGImI--aR 347 (577)
+|..++..|. .-.+.|+|.|=+.|-. +..+.+.++.+ .+.+.+..+.+-. -+. +.++..++. .|.|.+ +-
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i-~~~~~~~~i~~~~r~~~---~di~~a~~~g~~~i~i~~~~ 95 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAI-VALGLPARLMAWCRARD---ADIEAAARCGVDAVHISIPV 95 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH-HHcCCCcEEEEEcCCCH---HHHHHHHcCCcCEEEEEEcc
Confidence 4555555554 4456899999775544 33444444443 3444455566544 222 334444443 564443 32
Q ss_pred CCccCC----CCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHH-HHHhccceEEeccccCCCC
Q 008112 348 GDLGAE----LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSGETAHGK 422 (577)
Q Consensus 348 GDLg~e----lg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~n-av~~G~D~imLs~ETa~G~ 422 (577)
.|+-.+ ...++.....++.++.++++|..+-+.. ...+.-+...+.+++. +...|+|.|.|. +|.=.-
T Consensus 96 Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DT~G~~ 168 (365)
T TIGR02660 96 SDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGG------EDASRADPDFLVELAEVAAEAGADRFRFA-DTVGIL 168 (365)
T ss_pred CHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEee------cCCCCCCHHHHHHHHHHHHHcCcCEEEEc-ccCCCC
Confidence 332111 1223444445678899999998876542 2344455666666665 455799999995 898899
Q ss_pred CHHHHHHHHHHHHHHH
Q 008112 423 FPLKAVKVMHTVSLRT 438 (577)
Q Consensus 423 yP~eaV~~m~~I~~~a 438 (577)
.|.+.-+.+..+....
T Consensus 169 ~P~~v~~lv~~l~~~~ 184 (365)
T TIGR02660 169 DPFSTYELVRALRQAV 184 (365)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999988887665
No 161
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=76.26 E-value=52 Score=36.60 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=71.7
Q ss_pred CHHHHHHHHhcCCCEEEEcC-CCCHHHHHHHHHHHHhcCC----------CceEEEeecChhhHh---------------
Q 008112 278 DWDDIKFGVDNKVDFYAVSF-VKDAQVVHELKNYLKSCGA----------DIHVIVKIESADSIP--------------- 331 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~Sf-V~sa~dv~~lr~~l~~~~~----------~i~IiaKIEt~~gv~--------------- 331 (577)
+.+.++..++.|+..|..|. ..-...+...+ ..|- ...|++|+-+++-..
T Consensus 84 e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r----~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~ 159 (418)
T cd04742 84 EEGLVDLFLRHGVRVVEASAFMQLTPALVRYR----AKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLL 159 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcchhhHH----hcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHH
Confidence 44567888999999988874 22222222222 2221 145899987654431
Q ss_pred -----hHHHHHHh-----cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHc--------CCceEEEehhhHhhhcCCCC
Q 008112 332 -----NLHSIITA-----SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSM--------GKAVIVATNMLESMIVHPTP 393 (577)
Q Consensus 332 -----NldeIl~~-----sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~a--------GKPvi~ATq~LeSM~~~~~P 393 (577)
+.++-..+ +|.|.+. .|=|-+.+-.....+--.|.+.+.+. .+|||.|-.+-
T Consensus 160 ~~G~it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~--------- 229 (418)
T cd04742 160 AEGKITEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIG--------- 229 (418)
T ss_pred HcCCCCHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCC---------
Confidence 22222211 6888888 78777766443333333344433322 58999887654
Q ss_pred ChHhHHHHHHHHHhccceEEe
Q 008112 394 TRAEVSDIAIAVREGADAVML 414 (577)
Q Consensus 394 trAEv~Dv~nav~~G~D~imL 414 (577)
| -.+++-|...|+|++++
T Consensus 230 t---g~~vaAA~alGAd~V~~ 247 (418)
T cd04742 230 T---PEAAAAAFALGADFIVT 247 (418)
T ss_pred C---HHHHHHHHHcCCcEEee
Confidence 2 35688999999999986
No 162
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=76.16 E-value=26 Score=37.03 Aligned_cols=43 Identities=19% Similarity=0.060 Sum_probs=38.8
Q ss_pred CHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHhcC
Q 008112 122 TREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSK 164 (577)
Q Consensus 122 ~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~ 164 (577)
+.+.+++.++.|.+..-|..||.+.++..+.-+.+++....++
T Consensus 88 ~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~g 130 (293)
T PRK07315 88 HYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKG 130 (293)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 6889999999999999999999999988888888888877766
No 163
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.84 E-value=12 Score=39.12 Aligned_cols=65 Identities=9% Similarity=0.181 Sum_probs=48.0
Q ss_pred CHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhh--HhhHHHHHHh-cCEEEEcC
Q 008112 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS--IPNLHSIITA-SDGAMVAR 347 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~g--v~NldeIl~~-sDGImIaR 347 (577)
..+..+.+++.|+|+|.+-.. ++++++++.+.+.....++.+.| --| .+|+.++++. +|+|.+|.
T Consensus 191 tleea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~ieA----sGgIt~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 191 SLEEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVLLEA----SGNITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeEEEE----ECCCCHHHHHHHHHcCCCEEEeCh
Confidence 577888899999999999875 88888888887654344554444 223 3577777777 99999983
No 164
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=75.79 E-value=26 Score=36.95 Aligned_cols=123 Identities=19% Similarity=0.290 Sum_probs=80.5
Q ss_pred HHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhh---H
Q 008112 310 YLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNML---E 385 (577)
Q Consensus 310 ~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~L---e 385 (577)
+.++.+..+++...+... .++.+.+.+.. .+-||+.- -++|+++....-+++.+.|+.+|.++=..-.-+ |
T Consensus 70 ~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~----S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~e 144 (293)
T PRK07315 70 LVESMGITVPVAIHLDHG-HYEDALECIEVGYTSIMFDG----SHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEE 144 (293)
T ss_pred HHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCEEEEcC----CCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcC
Confidence 333333367899999887 56666655555 78999963 346778888889999999999999983322222 2
Q ss_pred hhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHH----HHHHHHHHHHHHH
Q 008112 386 SMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPL----KAVKVMHTVSLRT 438 (577)
Q Consensus 386 SM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~----eaV~~m~~I~~~a 438 (577)
.++..... .....++..++..|+|++-++-=|..|.||- --.+.|.+|.+..
T Consensus 145 d~~~g~s~-~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~ 200 (293)
T PRK07315 145 DGIIGKGE-LAPIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAV 200 (293)
T ss_pred ccccCccC-CCCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhc
Confidence 22111111 1234456677789999999998899999974 2344555554444
No 165
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.57 E-value=13 Score=39.12 Aligned_cols=66 Identities=3% Similarity=0.159 Sum_probs=51.3
Q ss_pred cCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhh--HhhHHHHHHh-cCEEEEcC
Q 008112 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS--IPNLHSIITA-SDGAMVAR 347 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~g--v~NldeIl~~-sDGImIaR 347 (577)
.+.+++..+++.|+|+|.+-. -++++++++.+.+++.+.++.+.| --| .+|+.++++. +|+|-++.
T Consensus 204 ~tleea~eA~~~GaD~I~LDn-~~~e~l~~av~~~~~~~~~i~leA----sGGIt~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 204 ETLEQVQEALEYGADIIMLDN-MPVDLMQQAVQLIRQQNPRVKIEA----SGNITLETIRAVAETGVDYISSSA 272 (288)
T ss_pred CCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHhcCCCeEEEE----ECCCCHHHHHHHHHcCCCEEEEch
Confidence 568888899999999999996 477899998888766556655444 222 4588888887 99999984
No 166
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=75.28 E-value=36 Score=32.93 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=67.4
Q ss_pred CccCHHHHHHHHhcCCCEEEE--cCCCC--HHHHHHHHHHHHhcCCCceEEE--eecChhhHhhHHHHHHh-cCEEEEcC
Q 008112 275 TEKDWDDIKFGVDNKVDFYAV--SFVKD--AQVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITA-SDGAMVAR 347 (577)
Q Consensus 275 tekD~~dI~~al~~gvD~I~~--SfV~s--a~dv~~lr~~l~~~~~~i~Iia--KIEt~~gv~NldeIl~~-sDGImIaR 347 (577)
+..+...+-.++..++++|=+ ||+.. .+.++.+++. ..+..+++ |+.+.. -.-+++..+. +|++.+-
T Consensus 11 ~~~~~~~~~~~l~~~i~~ieig~~~~~~~g~~~i~~i~~~----~~~~~i~~~~~v~~~~-~~~~~~~~~aGad~i~~h- 84 (202)
T cd04726 11 DLEEALELAKKVPDGVDIIEAGTPLIKSEGMEAVRALREA----FPDKIIVADLKTADAG-ALEAEMAFKAGADIVTVL- 84 (202)
T ss_pred CHHHHHHHHHHhhhcCCEEEcCCHHHHHhCHHHHHHHHHH----CCCCEEEEEEEecccc-HHHHHHHHhcCCCEEEEE-
Confidence 444555555555555898776 66432 3444444443 23556666 666552 1224555555 8888873
Q ss_pred CCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 348 GDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 348 GDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
.+..+..-+++++.|+++|++++++.. ..-|..| ...+...|+|.+.+.
T Consensus 85 --------~~~~~~~~~~~i~~~~~~g~~~~v~~~--------~~~t~~e---~~~~~~~~~d~v~~~ 133 (202)
T cd04726 85 --------GAAPLSTIKKAVKAAKKYGKEVQVDLI--------GVEDPEK---RAKLLKLGVDIVILH 133 (202)
T ss_pred --------eeCCHHHHHHHHHHHHHcCCeEEEEEe--------CCCCHHH---HHHHHHCCCCEEEEc
Confidence 111224457789999999999986411 0113333 445777899998883
No 167
>PRK08227 autoinducer 2 aldolase; Validated
Probab=75.24 E-value=15 Score=38.39 Aligned_cols=143 Identities=17% Similarity=0.225 Sum_probs=83.5
Q ss_pred HHHHHHHhcCCCEEEEc-CCCCHHHHHHHH---HHHHhc-CCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCC
Q 008112 280 DDIKFGVDNKVDFYAVS-FVKDAQVVHELK---NYLKSC-GADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAEL 354 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~S-fV~sa~dv~~lr---~~l~~~-~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~el 354 (577)
-+++.|+..|+|.|.+. |+-+..+-+.++ +...++ ...+++++-...-+.+.|=.++++.+-.+ | .+||+++
T Consensus 98 ~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRi--a-aELGADi 174 (264)
T PRK08227 98 VDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRI--A-AEMGAQI 174 (264)
T ss_pred ecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHH--H-HHHcCCE
Confidence 34677999999988763 333444433333 333332 23467777333333344433444432110 0 1233222
Q ss_pred ---CCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHH
Q 008112 355 ---PIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 431 (577)
Q Consensus 355 ---g~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m 431 (577)
++.. ...+++++.| ..||++|-. ...+++.-...++.++..|+-++...=-...=..|...++.+
T Consensus 175 VK~~y~~--~~f~~vv~a~---~vPVviaGG-------~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al 242 (264)
T PRK08227 175 IKTYYVE--EGFERITAGC---PVPIVIAGG-------KKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAV 242 (264)
T ss_pred EecCCCH--HHHHHHHHcC---CCcEEEeCC-------CCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHH
Confidence 1212 3455666654 589998754 112445566888999999999999865556667899999999
Q ss_pred HHHHHH
Q 008112 432 HTVSLR 437 (577)
Q Consensus 432 ~~I~~~ 437 (577)
+.|+++
T Consensus 243 ~~IVh~ 248 (264)
T PRK08227 243 HAVVHE 248 (264)
T ss_pred HHHHhC
Confidence 988764
No 168
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=75.07 E-value=58 Score=33.30 Aligned_cols=147 Identities=14% Similarity=0.134 Sum_probs=82.3
Q ss_pred CCCCccCHH-HHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecC--hhh--------HhhHHHHHHh-
Q 008112 272 PSITEKDWD-DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIES--ADS--------IPNLHSIITA- 339 (577)
Q Consensus 272 p~ltekD~~-dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt--~~g--------v~NldeIl~~- 339 (577)
|.-+..|.+ .+..+.+.|+|.|+++- --++..++. .+.++.++..+++ +.+ +..+++.++.
T Consensus 31 p~~~~~~~~~~~~~a~~~~~~~v~~~p----~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~G 103 (258)
T TIGR01949 31 PIKGLVDIRKTVNEVAEGGADAVLLHK----GIVRRGHRG---YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMG 103 (258)
T ss_pred CCCCcCCHHHHHHHHHhcCCCEEEeCc----chhhhcccc---cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCC
Confidence 455777765 45678899999999873 233333222 2456778889843 221 1335666665
Q ss_pred cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHH-HHHHHHhccceEEecccc
Q 008112 340 SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSD-IAIAVREGADAVMLSGET 418 (577)
Q Consensus 340 sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~D-v~nav~~G~D~imLs~ET 418 (577)
+|+|-+- -..+- .+..+....-+++.+.|+++|.|+++-.. ..- .+.+..+..++.. +..+...|+|.+-.+
T Consensus 104 a~~v~~~-~~~g~-~~~~~~~~~~~~i~~~~~~~g~~liv~~~-~~G-vh~~~~~~~~~~~~~~~a~~~GADyikt~--- 176 (258)
T TIGR01949 104 ADAVSIH-VNVGS-DTEWEQIRDLGMIAEICDDWGVPLLAMMY-PRG-PHIDDRDPELVAHAARLGAELGADIVKTP--- 176 (258)
T ss_pred CCEEEEE-EecCC-chHHHHHHHHHHHHHHHHHcCCCEEEEEe-ccC-cccccccHHHHHHHHHHHHHHCCCEEecc---
Confidence 6765542 11111 12123446677899999999999987211 000 0011122334445 345678999999975
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 008112 419 AHGKFPLKAVKVMHTVSLR 437 (577)
Q Consensus 419 a~G~yP~eaV~~m~~I~~~ 437 (577)
|+ --++.|++++..
T Consensus 177 ----~~-~~~~~l~~~~~~ 190 (258)
T TIGR01949 177 ----YT-GDIDSFRDVVKG 190 (258)
T ss_pred ----CC-CCHHHHHHHHHh
Confidence 22 134555555543
No 169
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=74.97 E-value=96 Score=33.02 Aligned_cols=144 Identities=20% Similarity=0.232 Sum_probs=77.9
Q ss_pred CHHHH-HHHHhcCCCEEEEcC--CC-CH--------HHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-----c
Q 008112 278 DWDDI-KFGVDNKVDFYAVSF--VK-DA--------QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----S 340 (577)
Q Consensus 278 D~~dI-~~al~~gvD~I~~Sf--V~-sa--------~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-----s 340 (577)
++.++ +.+.+.|+|+|-+.+ +. +. +.+.++.+.+.+. .+++|++|+- + .+.++.++++. +
T Consensus 113 ~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~-~~iPv~vKl~-p-~~~~~~~~a~~l~~~Ga 189 (325)
T cd04739 113 GWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA-VTIPVAVKLS-P-FFSALAHMAKQLDAAGA 189 (325)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc-cCCCEEEEcC-C-CccCHHHHHHHHHHcCC
Confidence 33444 344567899886544 11 11 1223333333322 3589999984 3 24466666653 7
Q ss_pred CEEEEc-CCCccCCCC--------------CCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHH
Q 008112 341 DGAMVA-RGDLGAELP--------------IEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAV 405 (577)
Q Consensus 341 DGImIa-RGDLg~elg--------------~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav 405 (577)
|||.+. |. .+..+. ....+...+.+-..++....|+|-...+. ...|+..++
T Consensus 190 dgi~~~nt~-~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~------------s~~Da~e~l 256 (325)
T cd04739 190 DGLVLFNRF-YQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVH------------DAEDVVKYL 256 (325)
T ss_pred CeEEEEcCc-CCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCC------------CHHHHHHHH
Confidence 887663 32 111111 11233444544455555678877655443 246788999
Q ss_pred HhccceEEeccccCCCCC-HHHHHHHHHHHHHHHhcccc
Q 008112 406 REGADAVMLSGETAHGKF-PLKAVKVMHTVSLRTEATIT 443 (577)
Q Consensus 406 ~~G~D~imLs~ETa~G~y-P~eaV~~m~~I~~~aE~~~~ 443 (577)
..|+|+|++. |+.=.+ |- .+.+|+++.+..+.
T Consensus 257 ~aGA~~Vqv~--ta~~~~gp~----~~~~i~~~L~~~l~ 289 (325)
T cd04739 257 LAGADVVMTT--SALLRHGPD----YIGTLLAGLEAWME 289 (325)
T ss_pred HcCCCeeEEe--hhhhhcCch----HHHHHHHHHHHHHH
Confidence 9999999997 333222 43 45556666655443
No 170
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=74.70 E-value=43 Score=35.93 Aligned_cols=119 Identities=22% Similarity=0.252 Sum_probs=66.7
Q ss_pred hcCCCEEEEcC----------CCCHHHHHHHHHHHHhcCC----CceEEEeecChhhHhhHHHHHHh-----cCEEEEcC
Q 008112 287 DNKVDFYAVSF----------VKDAQVVHELKNYLKSCGA----DIHVIVKIESADSIPNLHSIITA-----SDGAMVAR 347 (577)
Q Consensus 287 ~~gvD~I~~Sf----------V~sa~dv~~lr~~l~~~~~----~i~IiaKIEt~~gv~NldeIl~~-----sDGImIaR 347 (577)
..++|++-+.| -++.+.+.++.+.+.+.-. +++|++||----..+++.++++. +|||.+-=
T Consensus 167 ~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 167 YPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred HhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 34689887665 2344555555555543222 48999999733222345555543 78887752
Q ss_pred C-----CccC-----CC-CCC---cHHHHHHHHHHHHHHc--CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccce
Q 008112 348 G-----DLGA-----EL-PIE---EVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADA 411 (577)
Q Consensus 348 G-----DLg~-----el-g~e---~v~~~qk~Ii~~c~~a--GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~ 411 (577)
+ |+.. .. ++. .-+...+.+-...++. +.|+|-...+. ...|+..++..|+|+
T Consensus 247 t~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~------------s~eda~e~l~aGAd~ 314 (344)
T PRK05286 247 TTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGID------------SAEDAYEKIRAGASL 314 (344)
T ss_pred CccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCC------------CHHHHHHHHHcCCCH
Confidence 2 1110 00 111 1233444444444444 57888665544 246788888899999
Q ss_pred EEeccc
Q 008112 412 VMLSGE 417 (577)
Q Consensus 412 imLs~E 417 (577)
|++..-
T Consensus 315 V~v~~~ 320 (344)
T PRK05286 315 VQIYSG 320 (344)
T ss_pred HHHHHH
Confidence 999733
No 171
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=74.48 E-value=6 Score=42.20 Aligned_cols=48 Identities=23% Similarity=0.413 Sum_probs=39.7
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHH
Q 008112 111 KIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (577)
Q Consensus 111 KIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 158 (577)
-+.+.+|+.....+.++.++++|++++=+|++||..+.+.++++.+|+
T Consensus 84 ~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~ 131 (325)
T cd00381 84 LVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKK 131 (325)
T ss_pred eEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHH
Confidence 344556665567889999999999999999999999888888888875
No 172
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=74.33 E-value=23 Score=36.84 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=57.1
Q ss_pred HHHHHHHhc-CCCEEEEc-------CCCCHHHHHHHHHHHHhcCCCceEEEeec---ChhhHhhHHHHHHh-cCEEEEcC
Q 008112 280 DDIKFGVDN-KVDFYAVS-------FVKDAQVVHELKNYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVAR 347 (577)
Q Consensus 280 ~dI~~al~~-gvD~I~~S-------fV~sa~dv~~lr~~l~~~~~~i~IiaKIE---t~~gv~NldeIl~~-sDGImIaR 347 (577)
+.+++.++. |+++|++. .-...|-.+-++...+..+.++.||+-+- +.++++......+. +|++|+.+
T Consensus 25 ~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 25 AIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAIT 104 (288)
T ss_pred HHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 446788899 99998653 22223333333334445556789999885 44555555555554 89999865
Q ss_pred CCccCCCCCCcHHHHHHHHHHHHHHc-CCceEEE
Q 008112 348 GDLGAELPIEEVPLLQEEIIRTCRSM-GKAVIVA 380 (577)
Q Consensus 348 GDLg~elg~e~v~~~qk~Ii~~c~~a-GKPvi~A 380 (577)
-...- ...+++...-+.| |.+. +.|+++.
T Consensus 105 P~y~~-~~~~~i~~~~~~v---~~a~~~lpi~iY 134 (288)
T cd00954 105 PFYYK-FSFEEIKDYYREI---IAAAASLPMIIY 134 (288)
T ss_pred CCCCC-CCHHHHHHHHHHH---HHhcCCCCEEEE
Confidence 44321 2223444444444 5556 7899874
No 173
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=74.22 E-value=66 Score=34.28 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=36.8
Q ss_pred CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEecc---ccCCCCCHHHHHHHHHHHHHHHhccc
Q 008112 374 GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG---ETAHGKFPLKAVKVMHTVSLRTEATI 442 (577)
Q Consensus 374 GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~---ETa~G~yP~eaV~~m~~I~~~aE~~~ 442 (577)
..|+|.+..+- ...|+..++..|+|+++++. ..... -+...++++..+..+....+
T Consensus 255 ~ipIiasGGIr------------~~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~~~m 313 (326)
T cd02811 255 DLPLIASGGIR------------NGLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELRTAM 313 (326)
T ss_pred CCcEEEECCCC------------CHHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHHHHH
Confidence 68888765543 24789999999999999974 11111 24445567777766666543
No 174
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=74.17 E-value=51 Score=35.48 Aligned_cols=86 Identities=21% Similarity=0.314 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceE
Q 008112 300 DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVI 378 (577)
Q Consensus 300 sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi 378 (577)
+.++..++.++.++.| +..++- +=..+.+|.+.+. +|.+=||-+|+.- + .+++.+.+.|||+|
T Consensus 74 ~~e~~~~L~~~~~~~G--i~~~st---pfd~~svd~l~~~~v~~~KIaS~~~~n------~-----pLL~~~A~~gkPvi 137 (329)
T TIGR03569 74 SEEDHRELKEYCESKG--IEFLST---PFDLESADFLEDLGVPRFKIPSGEITN------A-----PLLKKIARFGKPVI 137 (329)
T ss_pred CHHHHHHHHHHHHHhC--CcEEEE---eCCHHHHHHHHhcCCCEEEECcccccC------H-----HHHHHHHhcCCcEE
Confidence 3445555555555432 334442 2333344445555 7889999887732 2 35667788899999
Q ss_pred EEehhhHhhhcCCCCChHhHHHHHHHHH-hccc
Q 008112 379 VATNMLESMIVHPTPTRAEVSDIAIAVR-EGAD 410 (577)
Q Consensus 379 ~ATq~LeSM~~~~~PtrAEv~Dv~nav~-~G~D 410 (577)
+.|.|- |-+|+...+.++. .|.+
T Consensus 138 lStGma---------tl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 138 LSTGMA---------TLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred EECCCC---------CHHHHHHHHHHHHHcCCC
Confidence 999863 7799999998887 4654
No 175
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=74.08 E-value=35 Score=33.39 Aligned_cols=119 Identities=15% Similarity=0.182 Sum_probs=64.9
Q ss_pred cCHHHHHHHHhcCCCEEEEcCCC-CHHHH-HHH-HHHHHhcCCCceEEEeecChhhHhhHHHHHHh--cCEEEEcCCCcc
Q 008112 277 KDWDDIKFGVDNKVDFYAVSFVK-DAQVV-HEL-KNYLKSCGADIHVIVKIESADSIPNLHSIITA--SDGAMVARGDLG 351 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~SfV~-sa~dv-~~l-r~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~--sDGImIaRGDLg 351 (577)
++.+|++.+.+.|+|+|.+=|.. |+..+ .+. +++.......+.-+.-+-+. -++++.+++.. .|+|-++-.|
T Consensus 7 ~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~-~~~~i~~ia~~~~~d~Vqlhg~e-- 83 (203)
T cd00405 7 TTLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNE-DLEEILEIAEELGLDVVQLHGDE-- 83 (203)
T ss_pred CCHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCC-CHHHHHHHHHhcCCCEEEECCCC--
Confidence 46789999999999999988854 45544 222 22222222323333334343 35566677755 6899987433
Q ss_pred CCCCCCcHHHHHHHHHHHHHH-cCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccC
Q 008112 352 AELPIEEVPLLQEEIIRTCRS-MGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETA 419 (577)
Q Consensus 352 ~elg~e~v~~~qk~Ii~~c~~-aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa 419 (577)
+.+. ++..++ .|++++-+-.+ .+..+ .+...+...|+|.+++-..|.
T Consensus 84 ---~~~~--------~~~l~~~~~~~~i~~i~~---------~~~~~-~~~~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 84 ---SPEY--------CAQLRARLGLPVIKAIRV---------KDEED-LEKAAAYAGEVDAILLDSKSG 131 (203)
T ss_pred ---CHHH--------HHHHHhhcCCcEEEEEec---------CChhh-HHHhhhccccCCEEEEcCCCC
Confidence 1111 122222 37777643221 11111 223456668999999854443
No 176
>PLN02321 2-isopropylmalate synthase
Probab=73.90 E-value=80 Score=37.02 Aligned_cols=155 Identities=17% Similarity=0.223 Sum_probs=94.9
Q ss_pred CCccCHHHH-HHHHhcCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCc---eEEEeec-----ChhhHhhHHHHHHh---c
Q 008112 274 ITEKDWDDI-KFGVDNKVDFYAVSF-VKDAQVVHELKNYLKSCGADI---HVIVKIE-----SADSIPNLHSIITA---S 340 (577)
Q Consensus 274 ltekD~~dI-~~al~~gvD~I~~Sf-V~sa~dv~~lr~~l~~~~~~i---~IiaKIE-----t~~gv~NldeIl~~---s 340 (577)
+|..++-.| +.-.+.|+|.|=+.| .-|+.|.+.++.+.......+ ..+++|= +.++++ ..++. +
T Consensus 105 ~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId---~A~~al~~a 181 (632)
T PLN02321 105 LTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDID---AAWEAVKHA 181 (632)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHH---HHHHHhcCC
Confidence 445555555 444578999998766 677788888777654321111 1112221 233333 23322 1
Q ss_pred ----CEEEEcCCCcc----CCCCCCcHHHHHHHHHHHHHHcCCc-eEEEehhhHhhhcCCCCChHhHHHHHH-HHHhccc
Q 008112 341 ----DGAMVARGDLG----AELPIEEVPLLQEEIIRTCRSMGKA-VIVATNMLESMIVHPTPTRAEVSDIAI-AVREGAD 410 (577)
Q Consensus 341 ----DGImIaRGDLg----~elg~e~v~~~qk~Ii~~c~~aGKP-vi~ATq~LeSM~~~~~PtrAEv~Dv~n-av~~G~D 410 (577)
=.++++-.|+- ..+..+++...-+++++.|+.+|.. +.+..+ ...+-.+..+.+++. ++..|+|
T Consensus 182 ~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~E------Da~rtd~d~l~~~~~~a~~aGa~ 255 (632)
T PLN02321 182 KRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPE------DAGRSDPEFLYRILGEVIKAGAT 255 (632)
T ss_pred CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecc------cCCCCCHHHHHHHHHHHHHcCCC
Confidence 13555545542 2234557777778899999999985 554322 222333445555555 5667999
Q ss_pred eEEeccccCCCCCHHHHHHHHHHHHHHH
Q 008112 411 AVMLSGETAHGKFPLKAVKVMHTVSLRT 438 (577)
Q Consensus 411 ~imLs~ETa~G~yP~eaV~~m~~I~~~a 438 (577)
.|.|. +|.=.-.|.+.-+++..+.+..
T Consensus 256 ~I~L~-DTvG~~~P~~v~~li~~l~~~~ 282 (632)
T PLN02321 256 TLNIP-DTVGYTLPSEFGQLIADIKANT 282 (632)
T ss_pred EEEec-ccccCCCHHHHHHHHHHHHHhc
Confidence 99995 9999999999999988887654
No 177
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=73.74 E-value=25 Score=36.89 Aligned_cols=97 Identities=19% Similarity=0.260 Sum_probs=56.2
Q ss_pred HHHHHHHhcCCCEEEEc------CCCCHHHHHHH-HHHHHhcCCCceEEEeec--ChhhHhhHHHHHHh-cCEEEEcCCC
Q 008112 280 DDIKFGVDNKVDFYAVS------FVKDAQVVHEL-KNYLKSCGADIHVIVKIE--SADSIPNLHSIITA-SDGAMVARGD 349 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~S------fV~sa~dv~~l-r~~l~~~~~~i~IiaKIE--t~~gv~NldeIl~~-sDGImIaRGD 349 (577)
+.+++.++.|+|+|++. +--|.++=.++ +...+..+.++.+|+-+- +.++++......+. +|++|+.+-.
T Consensus 32 ~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~pP~ 111 (303)
T PRK03620 32 EHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLPPY 111 (303)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 34578889999999763 22344443443 444555567788888773 22333333333333 8999998765
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 350 LGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 350 Lg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
+. ....+.+....+.+ |.+.+.|+++.
T Consensus 112 y~-~~~~~~i~~~f~~v---a~~~~lpi~lY 138 (303)
T PRK03620 112 LT-EAPQEGLAAHVEAV---CKSTDLGVIVY 138 (303)
T ss_pred CC-CCCHHHHHHHHHHH---HHhCCCCEEEE
Confidence 43 12223344444444 55568999875
No 178
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=73.66 E-value=66 Score=32.87 Aligned_cols=120 Identities=15% Similarity=0.167 Sum_probs=69.3
Q ss_pred CccCHHHHHHHHhcCCCEEEEc----------------CCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHH
Q 008112 275 TEKDWDDIKFGVDNKVDFYAVS----------------FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT 338 (577)
Q Consensus 275 tekD~~dI~~al~~gvD~I~~S----------------fV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~ 338 (577)
+..+...+..-++.++|+|=+. ..++++-+.++.+.+.. .+++|.+||=--.--.+..+++.
T Consensus 78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~--~~~PVsvKiR~~~~~~~~~~~a~ 155 (231)
T TIGR00736 78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE--LNKPIFVKIRGNCIPLDELIDAL 155 (231)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc--CCCcEEEEeCCCCCcchHHHHHH
Confidence 3345555544455678877664 34577777777777763 36889999853111112224433
Q ss_pred ----h-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHc-C-CceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccce
Q 008112 339 ----A-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSM-G-KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADA 411 (577)
Q Consensus 339 ----~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~a-G-KPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~ 411 (577)
. +|+|-|.-+.- .-+.+.-+.++..+++ + +|+|- ++..-+. .|+..++..|+|+
T Consensus 156 ~l~~aGad~i~Vd~~~~-------g~~~a~~~~I~~i~~~~~~ipIIg---------NGgI~s~---eda~e~l~~GAd~ 216 (231)
T TIGR00736 156 NLVDDGFDGIHVDAMYP-------GKPYADMDLLKILSEEFNDKIIIG---------NNSIDDI---ESAKEMLKAGADF 216 (231)
T ss_pred HHHHcCCCEEEEeeCCC-------CCchhhHHHHHHHHHhcCCCcEEE---------ECCcCCH---HHHHHHHHhCCCe
Confidence 2 89998842211 1122333444444444 3 88775 3344455 4566666679999
Q ss_pred EEec
Q 008112 412 VMLS 415 (577)
Q Consensus 412 imLs 415 (577)
||+.
T Consensus 217 Vmvg 220 (231)
T TIGR00736 217 VSVA 220 (231)
T ss_pred EEEc
Confidence 9985
No 179
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=73.65 E-value=98 Score=35.09 Aligned_cols=155 Identities=12% Similarity=0.122 Sum_probs=96.8
Q ss_pred CCccCHHHHHHH-HhcCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-----cCE--EE
Q 008112 274 ITEKDWDDIKFG-VDNKVDFYAVSF-VKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDG--AM 344 (577)
Q Consensus 274 ltekD~~dI~~a-l~~gvD~I~~Sf-V~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-----sDG--Im 344 (577)
+|..|+..|... .+.|+|.|=+.| +.+..|.+.++.+.. ...+..+.+-.-. --+.+|.-++. .+. ++
T Consensus 20 ~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~-~~~~~~i~al~r~--~~~did~a~~al~~~~~~~v~i~ 96 (494)
T TIGR00973 20 LTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIAR-TVKNPRVCGLARC--VEKDIDAAAEALKPAEKFRIHTF 96 (494)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHH-hCCCCEEEEEcCC--CHHhHHHHHHhccccCCCEEEEE
Confidence 455666666554 468999997655 667888888866653 3445566665432 12233433332 232 33
Q ss_pred EcCCCccCC----CCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHH-HHHhccceEEeccccC
Q 008112 345 VARGDLGAE----LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSGETA 419 (577)
Q Consensus 345 IaRGDLg~e----lg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~n-av~~G~D~imLs~ETa 419 (577)
+.-.|+-.+ ...+++.....+.++.|+++|..+.+..+ ...+-....+.+++. +...|+|.+.|. +|.
T Consensus 97 ~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~E------d~~r~d~~~l~~~~~~~~~~Ga~~i~l~-DTv 169 (494)
T TIGR00973 97 IATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCE------DAGRTEIPFLARIVEAAINAGATTINIP-DTV 169 (494)
T ss_pred EccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcC------CCCCCCHHHHHHHHHHHHHcCCCEEEeC-CCC
Confidence 333343221 22345666667889999999998776533 111223444555555 456799999995 999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 008112 420 HGKFPLKAVKVMHTVSLRT 438 (577)
Q Consensus 420 ~G~yP~eaV~~m~~I~~~a 438 (577)
=.-.|.+.-+.+..+.+..
T Consensus 170 G~~~P~~~~~~i~~l~~~~ 188 (494)
T TIGR00973 170 GYALPAEYGNLIKGLRENV 188 (494)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999988888887665
No 180
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=73.56 E-value=1.1e+02 Score=31.32 Aligned_cols=154 Identities=13% Similarity=0.056 Sum_probs=93.2
Q ss_pred CCccCHHHH-HHHHhcCCCEEEE-cCCCCHHHHHHHHHHHHhcCCCceEEEeec-ChhhHhhHHHHHHh-----cCEEEE
Q 008112 274 ITEKDWDDI-KFGVDNKVDFYAV-SFVKDAQVVHELKNYLKSCGADIHVIVKIE-SADSIPNLHSIITA-----SDGAMV 345 (577)
Q Consensus 274 ltekD~~dI-~~al~~gvD~I~~-SfV~sa~dv~~lr~~l~~~~~~i~IiaKIE-t~~gv~NldeIl~~-----sDGImI 345 (577)
++..++..| +.-.+.|++.|=+ +|+.+++|.+.++.+ .....+..+.+.+- +.++ ++..++. .|.|-+
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l-~~~~~~~~~~~l~r~~~~~---v~~a~~~~~~~~~~~i~i 92 (268)
T cd07940 17 LTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRI-AREVLNAEICGLARAVKKD---IDAAAEALKPAKVDRIHT 92 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH-HHhCCCCEEEEEccCCHhh---HHHHHHhCCCCCCCEEEE
Confidence 344454444 4556789999866 455588887666554 34345566666652 3333 3443433 464444
Q ss_pred c--CCCcc----CCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHH-HHhccceEEecccc
Q 008112 346 A--RGDLG----AELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIA-VREGADAVMLSGET 418 (577)
Q Consensus 346 a--RGDLg----~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~na-v~~G~D~imLs~ET 418 (577)
. -.|.- .....++....-+..++.|+++|..+.+.. ...+.-+.+.+.+++.. ...|+|.|.|. +|
T Consensus 93 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT 165 (268)
T cd07940 93 FIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA------EDATRTDLDFLIEVVEAAIEAGATTINIP-DT 165 (268)
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee------ecCCCCCHHHHHHHHHHHHHcCCCEEEEC-CC
Confidence 2 11111 112222334455678889999998766421 12334466676666664 55799999995 88
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 008112 419 AHGKFPLKAVKVMHTVSLRT 438 (577)
Q Consensus 419 a~G~yP~eaV~~m~~I~~~a 438 (577)
.=--+|.+.-+.++.+-+..
T Consensus 166 ~G~~~P~~v~~lv~~l~~~~ 185 (268)
T cd07940 166 VGYLTPEEFGELIKKLKENV 185 (268)
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 88889999999888887654
No 181
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=73.46 E-value=60 Score=34.29 Aligned_cols=114 Identities=15% Similarity=0.242 Sum_probs=77.3
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHH-c
Q 008112 296 SFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRS-M 373 (577)
Q Consensus 296 SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~-a 373 (577)
.-.+++++|+++++.+ +++||+|+--- =+...+.+.+. +|.| | ..+..-. -.+.+...+. .
T Consensus 51 ~R~~~p~~I~~I~~~V-----~iPVig~~kig-h~~Ea~~L~~~GvDiI-----D-eTe~lrP-----ade~~~~~K~~f 113 (287)
T TIGR00343 51 ARMSDPKMIKEIMDAV-----SIPVMAKVRIG-HFVEAQILEALGVDYI-----D-ESEVLTP-----ADWTFHIDKKKF 113 (287)
T ss_pred eecCCHHHHHHHHHhC-----CCCEEEEeecc-HHHHHHHHHHcCCCEE-----E-ccCCCCc-----HHHHHHHHHHHc
Confidence 4456888888888765 78999987432 16666666666 8887 4 2222211 1333333333 4
Q ss_pred CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhcc
Q 008112 374 GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEAT 441 (577)
Q Consensus 374 GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~ 441 (577)
+.|+..-. ..+.+.-+++..|+|.|--++|--.| +-+|||+-|+.+-.+....
T Consensus 114 ~vpfmad~--------------~~l~EAlrai~~GadmI~Tt~e~gTg-~v~~av~hlr~~~~~~~~~ 166 (287)
T TIGR00343 114 KVPFVCGA--------------RDLGEALRRINEGAAMIRTKGEAGTG-NIVEAVRHMRKINEEIRQI 166 (287)
T ss_pred CCCEEccC--------------CCHHHHHHHHHCCCCEEeccccCCCc-cHHHHHHHHHHHHHHHHHH
Confidence 78866422 33455778999999999999997777 6889999999998888754
No 182
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=73.34 E-value=39 Score=36.62 Aligned_cols=114 Identities=20% Similarity=0.258 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEc-CCCccCCCCCCcHHHHHHHHHHHHHHc--CC
Q 008112 300 DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVA-RGDLGAELPIEEVPLLQEEIIRTCRSM--GK 375 (577)
Q Consensus 300 sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIa-RGDLg~elg~e~v~~~qk~Ii~~c~~a--GK 375 (577)
+.+++.++++.. +.+|++|.. ...+......+. +|+|.+. -| |..+. ..+.....+.+.+++. ..
T Consensus 209 ~~~~l~~lr~~~-----~~PvivKgv--~~~~dA~~a~~~G~d~I~vsnhG--Gr~ld--~~~~~~~~l~~i~~a~~~~i 277 (351)
T cd04737 209 SPADIEFIAKIS-----GLPVIVKGI--QSPEDADVAINAGADGIWVSNHG--GRQLD--GGPASFDSLPEIAEAVNHRV 277 (351)
T ss_pred CHHHHHHHHHHh-----CCcEEEecC--CCHHHHHHHHHcCCCEEEEeCCC--CccCC--CCchHHHHHHHHHHHhCCCC
Confidence 778888888765 468999932 122333333334 8999984 12 22211 1111122222233333 47
Q ss_pred ceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHH---------HHHHHHHHHHhccc
Q 008112 376 AVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAV---------KVMHTVSLRTEATI 442 (577)
Q Consensus 376 Pvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV---------~~m~~I~~~aE~~~ 442 (577)
|+|....+- ...|+..++..|+|++|+. ...+.++ +++..+..+.+..+
T Consensus 278 ~vi~dGGIr------------~g~Di~kaLalGA~~V~iG------r~~l~~la~~G~~gv~~~l~~l~~El~~~m 335 (351)
T cd04737 278 PIIFDSGVR------------RGEHVFKALASGADAVAVG------RPVLYGLALGGAQGVASVLEHLNKELKIVM 335 (351)
T ss_pred eEEEECCCC------------CHHHHHHHHHcCCCEEEEC------HHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence 888765433 3578999999999999984 3333343 55555655555443
No 183
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=73.28 E-value=8.6 Score=37.00 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHhhcCc-eEEEEcCChHHHHHHHhhCCC-CeEEEEcCc
Q 008112 460 SEMFAYHATMMSNTLGT-SIVVFTRTGFMAILLSHYRPS-GTIFAFTNE 506 (577)
Q Consensus 460 ~~~ia~~a~~~a~~~~a-aIiV~T~sG~tA~~is~~RP~-~PIIAvT~~ 506 (577)
++..-..|++-|.+++. .|+|.+.||.||++++-+-+. ..|+.+|++
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh 60 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHH 60 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEee
Confidence 45566678889999999 899999999999999999997 899999975
No 184
>PRK14057 epimerase; Provisional
Probab=73.21 E-value=1.1e+02 Score=31.76 Aligned_cols=141 Identities=10% Similarity=0.081 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCC---------CceEEEeecChhhHhhHHHHHHhcCEEEEcCCCc
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA---------DIHVIVKIESADSIPNLHSIITASDGAMVARGDL 350 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~---------~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDL 350 (577)
..++.-.+.|+|+|.+- ++...++.+.-+++++.|. ...+..+-+| -++.++.++...|.|+| +
T Consensus 89 ~~i~~~~~aGad~It~H-~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~T--p~e~i~~~l~~vD~VLv----M 161 (254)
T PRK14057 89 TAAQACVKAGAHCITLQ-AEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT--PLDVIIPILSDVEVIQL----L 161 (254)
T ss_pred HHHHHHHHhCCCEEEEe-eccccCHHHHHHHHHHcCCCcccccccceeEEEECCCC--CHHHHHHHHHhCCEEEE----E
Confidence 45556678899988754 5766777777788888775 3677778888 58899999999999998 6
Q ss_pred cCCCCCC---cHHHHHHHHHHHH---HHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCC--CC
Q 008112 351 GAELPIE---EVPLLQEEIIRTC---RSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAH--GK 422 (577)
Q Consensus 351 g~elg~e---~v~~~qk~Ii~~c---~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~--G~ 422 (577)
+++-|+. -.+..-++|-+.. .++|..+.+. +... =+. .-+...+..|+|.+.+. |++ ..
T Consensus 162 tV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~Ie-------VDGG-I~~---~ti~~l~~aGad~~V~G--SalF~~~ 228 (254)
T PRK14057 162 AVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIV-------IDGS-LTQ---DQLPSLIAQGIDRVVSG--SALFRDD 228 (254)
T ss_pred EECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEE-------EECC-CCH---HHHHHHHHCCCCEEEEC--hHhhCCC
Confidence 6666655 2444444444322 2334332211 1111 111 12556778999988875 444 23
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 008112 423 FPLKAVKVMHTVSLRTEA 440 (577)
Q Consensus 423 yP~eaV~~m~~I~~~aE~ 440 (577)
-+.++++.++.+...+..
T Consensus 229 d~~~~i~~l~~~~~~~~~ 246 (254)
T PRK14057 229 RLVENTRSWRAMFKVAGD 246 (254)
T ss_pred CHHHHHHHHHHHHhhcCC
Confidence 578888888877665553
No 185
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=72.78 E-value=26 Score=33.60 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=78.8
Q ss_pred eecCCCCcccccccccccccccccccccccccCCCCCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCCh---
Q 008112 70 VPVSPEDVPKRDGEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDH--- 146 (577)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~--- 146 (577)
.+++|+.-..|.+.|++|..... ++..+.+-++ -+||+.
T Consensus 5 ~~lT~~g~~~L~~EL~~L~~~~r------------------------------~e~~~~i~~A--------r~~GDl~EN 46 (157)
T PRK01885 5 NYITREGYARLKQELDYLWREER------------------------------PEVTQKVSWA--------ASLGDRSEN 46 (157)
T ss_pred cccCHHHHHHHHHHHHHHHhhhh------------------------------HHHHHHHHHH--------HHcCCcchh
Confidence 56888888888888888765433 3445555554 244533
Q ss_pred -------HHHHHHHHHHHHHHHhcCCCeeEEE--eecCCCeeEEeecCCcEEE--cCCCEEEEEEe---cCCCCceEEec
Q 008112 147 -------ASHQKVIDLVKEYNAQSKDNVIAIM--LDTKGPEVRSGDLPQPITL--TSGQEFTFTIQ---RGVGSAECVSV 212 (577)
Q Consensus 147 -------e~~~~~i~~ir~~~~~~~~~~i~I~--~Dl~GpkiR~g~~~~~i~L--~~G~~v~lt~~---~~~~~~~~i~v 212 (577)
+....+-..|+++...+. ..-|+ -+++..+++.|.. +.| ..|+..+|++- ......+.|++
T Consensus 47 aeY~aAk~~~~~~e~rI~~L~~~L~--~A~iid~~~~~~~~V~~Gs~---V~l~d~~~~~~~~~iVgp~e~d~~~~~IS~ 121 (157)
T PRK01885 47 ADYIYGKKRLREIDRRVRFLTKRLE--NLKVVDYSPQQEGKVFFGAW---VEIENEDGEEKRFRIVGPDEIDGRKGYISI 121 (157)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHc--cCEEECCCCCCCCEEEeCCE---EEEEECCCCEEEEEEEChHHhCcCCCeEec
Confidence 233344445777777664 22233 2335568888866 444 56666666542 12233457777
Q ss_pred ccc--ccccccCCCCEEEEe--CCeEEEEEEEEe
Q 008112 213 NYD--DFVNDVEVGDMLLVD--GGMMSLLVKSKT 242 (577)
Q Consensus 213 ~~~--~~~~~v~~Gd~I~id--DG~i~l~V~~v~ 242 (577)
..| .-+-.-++||.|-+. +|...++|.++.
T Consensus 122 ~SPlG~ALlGk~vGd~v~v~~p~g~~~~eI~~I~ 155 (157)
T PRK01885 122 DSPMARALLKKEVGDEVTVNTPAGEAEWYVNEIE 155 (157)
T ss_pred cCHHHHHHhCCCCCCEEEEEcCCCcEEEEEEEEE
Confidence 655 122245899999985 888999998874
No 186
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=72.67 E-value=26 Score=36.34 Aligned_cols=97 Identities=15% Similarity=0.128 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCCEEEEc------CCCCHHHHHHH-HHHHHhcCCCceEEEeecC---hhhHhhHHHHHHh-cCEEEEcCC
Q 008112 280 DDIKFGVDNKVDFYAVS------FVKDAQVVHEL-KNYLKSCGADIHVIVKIES---ADSIPNLHSIITA-SDGAMVARG 348 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~S------fV~sa~dv~~l-r~~l~~~~~~i~IiaKIEt---~~gv~NldeIl~~-sDGImIaRG 348 (577)
+.+++.++.|+|+|++. +--|.++=.++ +...+..+.++.|++-+=. .++++......+. +|++|+.+-
T Consensus 23 ~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP 102 (285)
T TIGR00674 23 KLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTP 102 (285)
T ss_pred HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 34577889999999874 33344444444 3444555667889998743 3344433333333 899999865
Q ss_pred CccCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 349 DLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
... ..+.+.+...-+.|. .+.+.|+++.
T Consensus 103 ~y~-~~~~~~i~~~~~~i~---~~~~~pi~lY 130 (285)
T TIGR00674 103 YYN-KPTQEGLYQHFKAIA---EEVDLPIILY 130 (285)
T ss_pred cCC-CCCHHHHHHHHHHHH---hcCCCCEEEE
Confidence 442 122234444445554 4458998875
No 187
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=72.66 E-value=98 Score=32.46 Aligned_cols=117 Identities=21% Similarity=0.282 Sum_probs=75.8
Q ss_pred ceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhh---HhhhcCCCC
Q 008112 318 IHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNML---ESMIVHPTP 393 (577)
Q Consensus 318 i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~L---eSM~~~~~P 393 (577)
+++...+....-++.+..-+.. .+.||+..-+| |+++....-+++.+.|+..|.++-.....+ |.++....-
T Consensus 75 vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l----~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~ 150 (282)
T TIGR01859 75 VPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHL----PFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEA 150 (282)
T ss_pred CeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccccccccc
Confidence 7899998876655555555554 77899975554 777888888999999999998765333221 111111000
Q ss_pred ChHhHHHHHHHHH-hccceEEeccccCCCCC---HHHHHHHHHHHHHHH
Q 008112 394 TRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVSLRT 438 (577)
Q Consensus 394 trAEv~Dv~nav~-~G~D~imLs~ETa~G~y---P~eaV~~m~~I~~~a 438 (577)
+.-...++..++. .|+|.+-.|-=|..|.| |.--++.+..|++..
T Consensus 151 ~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~ 199 (282)
T TIGR01859 151 ELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELT 199 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHh
Confidence 0113344567775 89999998877777777 444466666666654
No 188
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=72.38 E-value=68 Score=33.24 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 008112 302 QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (577)
Q Consensus 302 ~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~AT 381 (577)
+.++.++++.++. .+.+++-+-+.+.++-+ .+.+|.+.||-+++.- ..+++++.+.||||++.|
T Consensus 66 ~gl~~L~~~~~~~--Gl~~~Tev~d~~~v~~~---~e~vdilqIgs~~~~n-----------~~LL~~va~tgkPVilk~ 129 (250)
T PRK13397 66 QGIRYLHEVCQEF--GLLSVSEIMSERQLEEA---YDYLDVIQVGARNMQN-----------FEFLKTLSHIDKPILFKR 129 (250)
T ss_pred HHHHHHHHHHHHc--CCCEEEeeCCHHHHHHH---HhcCCEEEECcccccC-----------HHHHHHHHccCCeEEEeC
Confidence 3466666666553 56788877776665555 4469999999776532 567788888999999976
Q ss_pred hhhHhhhcCCCCChHhHHHHHHHHH-hccceEEec
Q 008112 382 NMLESMIVHPTPTRAEVSDIAIAVR-EGADAVMLS 415 (577)
Q Consensus 382 q~LeSM~~~~~PtrAEv~Dv~nav~-~G~D~imLs 415 (577)
.+ .+|-.|+..++..+. .|..-++|.
T Consensus 130 G~--------~~t~~e~~~A~e~i~~~Gn~~i~L~ 156 (250)
T PRK13397 130 GL--------MATIEEYLGALSYLQDTGKSNIILC 156 (250)
T ss_pred CC--------CCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 63 367889988888776 577667775
No 189
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=72.24 E-value=10 Score=36.88 Aligned_cols=63 Identities=14% Similarity=0.221 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhH--hhHHHHHHh-cCEEEEc
Q 008112 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVA 346 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-sDGImIa 346 (577)
.+.+..+++.|+|.|.+=.. ++++++++.+.+...+.++. ||---|+ +|+.++.+. +|+|.+|
T Consensus 90 ~ee~~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~~~v~----ie~SGGI~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 90 LEEAEEALEAGADIIMLDNM-SPEDLKEAVEELRELNPRVK----IEASGGITLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHHHHHHHHTT-SEEEEES--CHHHHHHHHHHHHHHTTTSE----EEEESSSSTTTHHHHHHTT-SEEEEC
T ss_pred HHHHHHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcCCcEE----EEEECCCCHHHHHHHHhcCCCEEEcC
Confidence 56778899999999999876 78999999999988777744 4444444 588899887 7999987
No 190
>PRK06852 aldolase; Validated
Probab=72.17 E-value=71 Score=34.08 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=58.8
Q ss_pred cCCceEEEehhhHhhhcC--CCCChHhHHHHHHHHHhc------cceEEeccccCCC-CCHHHHHHHHHHHHHHHhccc-
Q 008112 373 MGKAVIVATNMLESMIVH--PTPTRAEVSDIAIAVREG------ADAVMLSGETAHG-KFPLKAVKVMHTVSLRTEATI- 442 (577)
Q Consensus 373 aGKPvi~ATq~LeSM~~~--~~PtrAEv~Dv~nav~~G------~D~imLs~ETa~G-~yP~eaV~~m~~I~~~aE~~~- 442 (577)
..+|.|+-..-=.++... +.|...-+++|-.|++.| +|+|..+- -.| .|=-+.++.+.+|+.+++++-
T Consensus 91 ~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v--~~Gs~~E~~ml~~l~~v~~ea~~~Gl 168 (304)
T PRK06852 91 PDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTI--YLGSEYESEMLSEAAQIIYEAHKHGL 168 (304)
T ss_pred CCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEE--ecCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 357777643311111110 135445668899999999 88888642 233 344677888888888888651
Q ss_pred cCC-CCCCCCCcccC-CChhHHHHHHHHHHHhhcCc-eEEE-Ec
Q 008112 443 TGG-AMPPNLGQAFK-NHMSEMFAYHATMMSNTLGT-SIVV-FT 482 (577)
Q Consensus 443 ~~~-~~~~~l~~~~~-~~~~~~ia~~a~~~a~~~~a-aIiV-~T 482 (577)
+.- ..|+. +...+ ....+.++ .|+++|-+++| -|=+ +|
T Consensus 169 Pll~~~ypr-G~~i~~~~~~~~ia-~aaRiaaELGADIVKv~y~ 210 (304)
T PRK06852 169 IAVLWIYPR-GKAVKDEKDPHLIA-GAAGVAACLGADFVKVNYP 210 (304)
T ss_pred cEEEEeecc-CcccCCCccHHHHH-HHHHHHHHHcCCEEEecCC
Confidence 100 01110 11111 12345555 56699999999 4444 55
No 191
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=72.15 E-value=58 Score=35.29 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=41.5
Q ss_pred EEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHhcC
Q 008112 112 IVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSK 164 (577)
Q Consensus 112 Ii~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~ 164 (577)
+..-..|...-.+.+++++++|+..+-+..-+.+..+..+..+.+++..+.++
T Consensus 149 LylIT~~~~~ll~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~~~~ 201 (347)
T PRK02615 149 LYLITSPSENLLEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRYG 201 (347)
T ss_pred EEEEECCchhHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 44444453223567999999999999999999999888888888888877765
No 192
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=72.04 E-value=62 Score=34.40 Aligned_cols=117 Identities=21% Similarity=0.213 Sum_probs=64.4
Q ss_pred cCCCEEEEcC----C------CCHHHHHHHHHHHHh----cCCCceEEEeecChhhHhhHHHHHHh-----cCEEEE-cC
Q 008112 288 NKVDFYAVSF----V------KDAQVVHELKNYLKS----CGADIHVIVKIESADSIPNLHSIITA-----SDGAMV-AR 347 (577)
Q Consensus 288 ~gvD~I~~Sf----V------~sa~dv~~lr~~l~~----~~~~i~IiaKIEt~~gv~NldeIl~~-----sDGImI-aR 347 (577)
..+|+|-+.| + ++++.+.++.+.+.+ .+.+++|++||---...+++.++++. +|+|-+ +|
T Consensus 159 ~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~ 238 (327)
T cd04738 159 PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNT 238 (327)
T ss_pred hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECC
Confidence 3488877655 1 234555555444432 23468999999432222345555443 788874 32
Q ss_pred C----C-----ccCCC----CCCcHHHHHHHHHHHHHHc--CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceE
Q 008112 348 G----D-----LGAEL----PIEEVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAV 412 (577)
Q Consensus 348 G----D-----Lg~el----g~e~v~~~qk~Ii~~c~~a--GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~i 412 (577)
- + +.... |....+...+.+-...+.. ..|+|....+. | ..|+..++..|+|++
T Consensus 239 ~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~---------t---~~da~e~l~aGAd~V 306 (327)
T cd04738 239 TISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGIS---------S---GEDAYEKIRAGASLV 306 (327)
T ss_pred cccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCC---------C---HHHHHHHHHcCCCHH
Confidence 1 0 00000 1112334445554445555 57887655433 2 356888888999999
Q ss_pred Eecc
Q 008112 413 MLSG 416 (577)
Q Consensus 413 mLs~ 416 (577)
|+..
T Consensus 307 ~vg~ 310 (327)
T cd04738 307 QLYT 310 (327)
T ss_pred hccH
Confidence 9963
No 193
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=71.95 E-value=78 Score=34.22 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEEEEcCCCccCCCCC-CcHHHHHHHHHHHHHHc
Q 008112 299 KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARGDLGAELPI-EEVPLLQEEIIRTCRSM 373 (577)
Q Consensus 299 ~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGImIaRGDLg~elg~-e~v~~~qk~Ii~~c~~a 373 (577)
.+.+++.++++.. +.+|+.| ++.+.++...+ +|+|.|. +--|..+.. ..-..+..++....++.
T Consensus 200 ~~~~~i~~l~~~~-----~~PvivK-----gv~~~~dA~~a~~~G~d~I~vs-nhgG~~~d~~~~~~~~L~~i~~~~~~~ 268 (344)
T cd02922 200 LTWDDIKWLRKHT-----KLPIVLK-----GVQTVEDAVLAAEYGVDGIVLS-NHGGRQLDTAPAPIEVLLEIRKHCPEV 268 (344)
T ss_pred CCHHHHHHHHHhc-----CCcEEEE-----cCCCHHHHHHHHHcCCCEEEEE-CCCcccCCCCCCHHHHHHHHHHHHHHh
Confidence 5677787777644 5688998 33344444433 8998886 222433321 12223344444444333
Q ss_pred --CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 374 --GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 374 --GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
..|+|.+..+- --.|++.++..|+|++.+.
T Consensus 269 ~~~~~vi~~GGIr------------~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 269 FDKIEVYVDGGVR------------RGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred CCCceEEEeCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 37887755433 3579999999999999974
No 194
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=71.93 E-value=74 Score=33.09 Aligned_cols=169 Identities=15% Similarity=0.106 Sum_probs=93.2
Q ss_pred CceeeeCCCCCCCCCCCccCHHHH-HHHHhcCCCEEEEc-CCCCH-----HHHHHHHHHHHhcCCCceEEEeecChhhHh
Q 008112 259 RRHLNVRGKSATLPSITEKDWDDI-KFGVDNKVDFYAVS-FVKDA-----QVVHELKNYLKSCGADIHVIVKIESADSIP 331 (577)
Q Consensus 259 ~Kginlp~~~~~lp~ltekD~~dI-~~al~~gvD~I~~S-fV~sa-----~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~ 331 (577)
|-|..-|+..+ |.+++..| +.-.+.|+|.|=+. |+... .|-.++.+.+... .+..+.+-.-+.++
T Consensus 7 RDG~Q~~~~~~-----s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~-~~~~~~~~~~~~~d-- 78 (274)
T cd07938 7 RDGLQNEKTFI-----PTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRR-PGVRYSALVPNLRG-- 78 (274)
T ss_pred CCCCcCCCCCc-----CHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccC-CCCEEEEECCCHHH--
Confidence 33445555443 43444444 45567899998664 43322 3444555555432 24555555534443
Q ss_pred hHHHHHHh-cCE--EEEcCCCc----cCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHH-
Q 008112 332 NLHSIITA-SDG--AMVARGDL----GAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI- 403 (577)
Q Consensus 332 NldeIl~~-sDG--ImIaRGDL----g~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~n- 403 (577)
++..++. .|. +++.-.|+ -.....++....-++.++.++++|+-+.+.-.+--+.-....-+...+.+++.
T Consensus 79 -v~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~ 157 (274)
T cd07938 79 -AERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAER 157 (274)
T ss_pred -HHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHH
Confidence 3333333 454 33333332 11122234555556788999999998753211110000111224455666665
Q ss_pred HHHhccceEEeccccCCCCCHHHHHHHHHHHHHH
Q 008112 404 AVREGADAVMLSGETAHGKFPLKAVKVMHTVSLR 437 (577)
Q Consensus 404 av~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~ 437 (577)
+...|+|.|-|. +|.=.-.|.+.-+.+..+.++
T Consensus 158 ~~~~Ga~~i~l~-DT~G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 158 LLDLGCDEISLG-DTIGVATPAQVRRLLEAVLER 190 (274)
T ss_pred HHHcCCCEEEEC-CCCCccCHHHHHHHHHHHHHH
Confidence 567899999995 888888899988888887654
No 195
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=71.91 E-value=82 Score=33.22 Aligned_cols=117 Identities=20% Similarity=0.328 Sum_probs=71.6
Q ss_pred CCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCce-EEEehhh---HhhhcC
Q 008112 316 ADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAV-IVATNML---ESMIVH 390 (577)
Q Consensus 316 ~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPv-i~ATq~L---eSM~~~ 390 (577)
.++++...+....-++.+.+-++. .+.||+. |-.+|+++=...-+++++.|+++|.+| .=-..+- +.....
T Consensus 73 ~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~ 148 (283)
T PRK07998 73 MDVPVSLHLDHGKTFEDVKQAVRAGFTSVMID----GAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSE 148 (283)
T ss_pred CCCCEEEECcCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcccccccc
Confidence 356777777766544444443433 6799994 345788776677899999999999998 1111110 000000
Q ss_pred CCCChHhHHHHHHHHH-hccceEEeccccCCCCC--HHHHHHHHHHHHHH
Q 008112 391 PTPTRAEVSDIAIAVR-EGADAVMLSGETAHGKF--PLKAVKVMHTVSLR 437 (577)
Q Consensus 391 ~~PtrAEv~Dv~nav~-~G~D~imLs~ETa~G~y--P~eaV~~m~~I~~~ 437 (577)
.-...+..++..++. -|+|++-.+--|+.|.| |---...+.+|...
T Consensus 149 -~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~ 197 (283)
T PRK07998 149 -ADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEV 197 (283)
T ss_pred -ccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhh
Confidence 000112334556663 69999999999999999 43334555555443
No 196
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=71.68 E-value=1.3e+02 Score=31.71 Aligned_cols=119 Identities=21% Similarity=0.304 Sum_probs=77.2
Q ss_pred CCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEE-ehh--hHhhhcCC
Q 008112 316 ADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA-TNM--LESMIVHP 391 (577)
Q Consensus 316 ~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A-Tq~--LeSM~~~~ 391 (577)
..++|...+....-.+.+..-+.. .+-|||. +-.+|+++=...-+++++.|++.|..|=.= -.+ -|.-....
T Consensus 68 ~~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD----~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~ 143 (276)
T cd00947 68 ASVPVALHLDHGSSFELIKRAIRAGFSSVMID----GSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGD 143 (276)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCEEEeC----CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccc
Confidence 468899999888655555444444 6799997 345688887788899999999999887210 001 11000000
Q ss_pred CCChHhHHHHHHHHHh-ccceEEeccccCCCCCHH----HHHHHHHHHHHHH
Q 008112 392 TPTRAEVSDIAIAVRE-GADAVMLSGETAHGKFPL----KAVKVMHTVSLRT 438 (577)
Q Consensus 392 ~PtrAEv~Dv~nav~~-G~D~imLs~ETa~G~yP~----eaV~~m~~I~~~a 438 (577)
.-......++..++.. |+|++..|--|+.|.|+- -=.+.|.+|.+.+
T Consensus 144 ~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~ 195 (276)
T cd00947 144 EGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV 195 (276)
T ss_pred cccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh
Confidence 0011223456667764 999999999999999964 4455566666655
No 197
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=71.39 E-value=95 Score=31.59 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCEEEEcCCC----------CHHHHHHHHHHHHhcCCCce
Q 008112 279 WDDIKFGVDNKVDFYAVSFVK----------DAQVVHELKNYLKSCGADIH 319 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~----------sa~dv~~lr~~l~~~~~~i~ 319 (577)
.+.++.+.++|.|+|=++.-. +.+++.++++.+++.|-.+.
T Consensus 24 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVN 74 (283)
T ss_pred HHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCcee
Confidence 356777889999999887422 67889999999987766544
No 198
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=71.32 E-value=1.3e+02 Score=31.09 Aligned_cols=159 Identities=16% Similarity=0.155 Sum_probs=89.7
Q ss_pred CccCHHHH-HHHHhcCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCceEEEeecC-hhhHh-----hHHHHHHh-cCEEEE
Q 008112 275 TEKDWDDI-KFGVDNKVDFYAVSF-VKDAQVVHELKNYLKSCGADIHVIVKIES-ADSIP-----NLHSIITA-SDGAMV 345 (577)
Q Consensus 275 tekD~~dI-~~al~~gvD~I~~Sf-V~sa~dv~~lr~~l~~~~~~i~IiaKIEt-~~gv~-----NldeIl~~-sDGImI 345 (577)
+..++..| +...+.|+|.|=+.| --++.++..++...+..-++..+.+..-. ..++. .++..++. .|.|.+
T Consensus 18 s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g~~~i~i 97 (273)
T cd07941 18 SVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLEAGTPVVTI 97 (273)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHhCCCCEEEE
Confidence 44444444 455679999997744 34688877776544332124444443211 11221 23334443 565544
Q ss_pred c--CCCcc----CCCCCCcHHHHHHHHHHHHHHcCCceEEE-ehhhHhhhcCCCCChHhHHHHHH-HHHhccceEEeccc
Q 008112 346 A--RGDLG----AELPIEEVPLLQEEIIRTCRSMGKAVIVA-TNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSGE 417 (577)
Q Consensus 346 a--RGDLg----~elg~e~v~~~qk~Ii~~c~~aGKPvi~A-Tq~LeSM~~~~~PtrAEv~Dv~n-av~~G~D~imLs~E 417 (577)
- -.|+- .....++.....++.++.++++|..+.+. +.+.+ ...-+...+.+++. +...|+|.+.|. +
T Consensus 98 ~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d----~~~~~~~~~~~~~~~~~~~g~~~i~l~-D 172 (273)
T cd07941 98 FGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFD----GYKANPEYALATLKAAAEAGADWLVLC-D 172 (273)
T ss_pred EEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccc----cCCCCHHHHHHHHHHHHhCCCCEEEEe-c
Confidence 2 22221 11223355556678999999999987662 22212 11223444555554 355699999884 8
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 008112 418 TAHGKFPLKAVKVMHTVSLRT 438 (577)
Q Consensus 418 Ta~G~yP~eaV~~m~~I~~~a 438 (577)
|.=.-.|.+.-+.++.+.+..
T Consensus 173 T~G~~~P~~v~~lv~~l~~~~ 193 (273)
T cd07941 173 TNGGTLPHEIAEIVKEVRERL 193 (273)
T ss_pred CCCCCCHHHHHHHHHHHHHhC
Confidence 888899999888877776543
No 199
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=70.89 E-value=64 Score=32.64 Aligned_cols=147 Identities=22% Similarity=0.188 Sum_probs=86.8
Q ss_pred CCCCccCHHHH-HHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-----cCEEEE
Q 008112 272 PSITEKDWDDI-KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGAMV 345 (577)
Q Consensus 272 p~ltekD~~dI-~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-----sDGImI 345 (577)
|..|+.|.+.+ +.|.+.|+..|+++ +..+..+++.+. |..+++.+=|=-|.|....+.-+.. .||.--
T Consensus 17 p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~E 90 (221)
T PRK00507 17 PEATEEDIDKLCDEAKEYGFASVCVN----PSYVKLAAELLK--GSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGADE 90 (221)
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHHHHHHHhC--CCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCce
Confidence 56677775554 67888999999887 778888888883 5568888887777776655444331 222100
Q ss_pred cCCCccCCCCC---CcHHHHHHHHHHHHHH-cCCc--eEEEehhhHhhhcCCCCChHhHHHHHH-HHHhccceEEecccc
Q 008112 346 ARGDLGAELPI---EEVPLLQEEIIRTCRS-MGKA--VIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSGET 418 (577)
Q Consensus 346 aRGDLg~elg~---e~v~~~qk~Ii~~c~~-aGKP--vi~ATq~LeSM~~~~~PtrAEv~Dv~n-av~~G~D~imLs~ET 418 (577)
=|+-+.++. .++..+.++|...... .+++ +|+ +.+.-+..|+.++.. ++..|+|.|--|.=-
T Consensus 91 --iD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIl---------Et~~L~~e~i~~a~~~~~~agadfIKTsTG~ 159 (221)
T PRK00507 91 --IDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVII---------ETCLLTDEEKVKACEIAKEAGADFVKTSTGF 159 (221)
T ss_pred --EeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEe---------ecCcCCHHHHHHHHHHHHHhCCCEEEcCCCC
Confidence 012222221 1455555555444443 3433 233 345557788888887 777899966554111
Q ss_pred CCCCCHHHHHHHHHHHH
Q 008112 419 AHGKFPLKAVKVMHTVS 435 (577)
Q Consensus 419 a~G~yP~eaV~~m~~I~ 435 (577)
..|.--.+.|+.|++.+
T Consensus 160 ~~~gat~~~v~~m~~~~ 176 (221)
T PRK00507 160 STGGATVEDVKLMRETV 176 (221)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 11223367888877654
No 200
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=70.57 E-value=18 Score=37.66 Aligned_cols=66 Identities=12% Similarity=0.202 Sum_probs=48.6
Q ss_pred CccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhH--hhHHHHHHh-cCEEEEc
Q 008112 275 TEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVA 346 (577)
Q Consensus 275 tekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-sDGImIa 346 (577)
+-...+++..+++.|+|+|.+-.+ ++++++++.+++... .+++ ||=--|| +|+.++++. +|+|-++
T Consensus 187 ev~t~eea~~A~~~gaD~I~ld~~-~~e~l~~~v~~i~~~-~~i~----i~asGGIt~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 187 EVETLEEAEEALEAGADIIMLDNM-SPEELKEAVKLLKGL-PRVL----LEASGGITLENIRAYAETGVDVISTG 255 (269)
T ss_pred ecCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhccC-CCeE----EEEECCCCHHHHHHHHHcCCCEEEEc
Confidence 345678888889999999999776 668888888777543 3443 3333344 689999988 9999885
No 201
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=70.35 E-value=53 Score=34.61 Aligned_cols=117 Identities=17% Similarity=0.214 Sum_probs=76.4
Q ss_pred CceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceE---EEehhh-HhhhcCC
Q 008112 317 DIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVI---VATNML-ESMIVHP 391 (577)
Q Consensus 317 ~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi---~ATq~L-eSM~~~~ 391 (577)
.++|...+....-++.+..-+.. .+-||+. |-.+|+++=-..-+++++.|+++|.+|= -...-- +.....
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~GftSVM~D----gS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~- 151 (285)
T PRK07709 77 TVPVAIHLDHGSSFEKCKEAIDAGFTSVMID----ASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAE- 151 (285)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccc-
Confidence 36888888887755555555544 6689996 4568888877888999999999999871 100000 110000
Q ss_pred CCChHhHHHHHHHHH-hccceEEeccccCCCCC---HHHHHHHHHHHHHHH
Q 008112 392 TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVSLRT 438 (577)
Q Consensus 392 ~PtrAEv~Dv~nav~-~G~D~imLs~ETa~G~y---P~eaV~~m~~I~~~a 438 (577)
.-......++..++. -|+|++..|--|+.|.| |.--.+.|.+|..+.
T Consensus 152 ~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~ 202 (285)
T PRK07709 152 GVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT 202 (285)
T ss_pred cccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHH
Confidence 000122344556664 59999999999999999 555566666665544
No 202
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=70.19 E-value=23 Score=36.98 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=47.3
Q ss_pred cCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhH--hhHHHHHHh-cCEEEEc
Q 008112 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVA 346 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-sDGImIa 346 (577)
...+++..+++.|+|+|.+..+ ++++++++.+.+.....+++++| --|| +|+.++++. +|+|.++
T Consensus 191 ~t~eea~~A~~~gaD~I~ld~~-~p~~l~~~~~~~~~~~~~i~i~A----sGGI~~~ni~~~~~~Gvd~I~vs 258 (272)
T cd01573 191 DSLEEALAAAEAGADILQLDKF-SPEELAELVPKLRSLAPPVLLAA----AGGINIENAAAYAAAGADILVTS 258 (272)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhccCCCceEEE----ECCCCHHHHHHHHHcCCcEEEEC
Confidence 4567788888999999999765 55778877776654334555554 2334 788899888 9999776
No 203
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=70.16 E-value=1.3e+02 Score=30.41 Aligned_cols=140 Identities=12% Similarity=0.157 Sum_probs=98.6
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCc-
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEE- 358 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~- 358 (577)
+.+..-.+.|++.+.+- ++-.++..++.+++++.|-...+-.|=+| -|+.++..++..|-++| .++|=|+..
T Consensus 78 q~V~~~a~agas~~tfH-~E~~q~~~~lv~~ir~~Gmk~G~alkPgT--~Ve~~~~~~~~~D~vLv----MtVePGFGGQ 150 (224)
T KOG3111|consen 78 QWVDQMAKAGASLFTFH-YEATQKPAELVEKIREKGMKVGLALKPGT--PVEDLEPLAEHVDMVLV----MTVEPGFGGQ 150 (224)
T ss_pred HHHHHHHhcCcceEEEE-EeeccCHHHHHHHHHHcCCeeeEEeCCCC--cHHHHHHhhccccEEEE----EEecCCCchh
Confidence 34444457899977543 45557789999999999988888888888 48888888888998887 566666552
Q ss_pred --HHHHHHHHHHHHHHcCCceE-EEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHH
Q 008112 359 --VPLLQEEIIRTCRSMGKAVI-VATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVS 435 (577)
Q Consensus 359 --v~~~qk~Ii~~c~~aGKPvi-~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~ 435 (577)
++....++-..-.++..+.| +-.. -.|.- +..+...|++++....-.---.-|-++++.|++.+
T Consensus 151 kFme~mm~KV~~lR~kyp~l~ievDGG--------v~~~t-----i~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v 217 (224)
T KOG3111|consen 151 KFMEDMMPKVEWLREKYPNLDIEVDGG--------VGPST-----IDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSV 217 (224)
T ss_pred hhHHHHHHHHHHHHHhCCCceEEecCC--------cCcch-----HHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHH
Confidence 33344444444457888888 3211 13333 66788889999987544444567999999999988
Q ss_pred HHHh
Q 008112 436 LRTE 439 (577)
Q Consensus 436 ~~aE 439 (577)
+.+-
T Consensus 218 ~~a~ 221 (224)
T KOG3111|consen 218 EKAA 221 (224)
T ss_pred hhhh
Confidence 7653
No 204
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=70.07 E-value=1.2e+02 Score=31.12 Aligned_cols=67 Identities=9% Similarity=0.215 Sum_probs=42.5
Q ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeec--C-hhhHhhHHHHHHh-cCEEEEcCCCcc
Q 008112 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIE--S-ADSIPNLHSIITA-SDGAMVARGDLG 351 (577)
Q Consensus 282 I~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIE--t-~~gv~NldeIl~~-sDGImIaRGDLg 351 (577)
.+.+.+.|+|||=.+|.. ++..+++......-.+..+.-|= | .++++++.+.++. ++|+.++|.=+.
T Consensus 166 ~~~a~e~GAD~vKt~~~~---~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 166 ARVAAELGADIVKTNYTG---DPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred HHHHHHHCCCEEeeCCCC---CHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 356778999999999875 44555555542222233333343 4 3566677777776 889998876553
No 205
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=70.06 E-value=69 Score=35.91 Aligned_cols=123 Identities=20% Similarity=0.246 Sum_probs=71.0
Q ss_pred CHHHHHHHHhcCCCEEEEcCC-C-CHHHHHHHHHH-H--HhcC---CCceEEEeecChhhHhhH---------HHHHHh-
Q 008112 278 DWDDIKFGVDNKVDFYAVSFV-K-DAQVVHELKNY-L--KSCG---ADIHVIVKIESADSIPNL---------HSIITA- 339 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~SfV-~-sa~dv~~lr~~-l--~~~~---~~i~IiaKIEt~~gv~Nl---------deIl~~- 339 (577)
+.+.++..++.|+..|..|.- . ++..+ ..+.. + ...+ ....|++|+-+++-...+ +.+.+.
T Consensus 89 e~~~v~l~l~~~V~~veasa~~~~~p~~v-~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G 167 (444)
T TIGR02814 89 EWGLVDLLLRHGVRIVEASAFMQLTPALV-RYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEG 167 (444)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcchh-hhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcC
Confidence 456677888999998877622 2 23222 22210 0 0000 124799998777655431 222211
Q ss_pred ---------------cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHH------c--CCceEEEehhhHhhhcCCCCChH
Q 008112 340 ---------------SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRS------M--GKAVIVATNMLESMIVHPTPTRA 396 (577)
Q Consensus 340 ---------------sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~------a--GKPvi~ATq~LeSM~~~~~PtrA 396 (577)
+|.|.+. .|=|-+.+-.....+-..|++...+ + .+|||.|-.+. |
T Consensus 168 ~it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~---------t-- 235 (444)
T TIGR02814 168 RITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIG---------T-- 235 (444)
T ss_pred CCCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCC---------C--
Confidence 6888887 7777776644333344444433222 2 45788887655 2
Q ss_pred hHHHHHHHHHhccceEEe
Q 008112 397 EVSDIAIAVREGADAVML 414 (577)
Q Consensus 397 Ev~Dv~nav~~G~D~imL 414 (577)
-.+++.+...|+|+|.+
T Consensus 236 -~~~vaAAlaLGAdgV~~ 252 (444)
T TIGR02814 236 -PEAAAAAFMLGADFIVT 252 (444)
T ss_pred -HHHHHHHHHcCCcEEEe
Confidence 25688999999999986
No 206
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=69.63 E-value=66 Score=33.48 Aligned_cols=106 Identities=14% Similarity=0.223 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 301 AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 301 a~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
.+.++.++++..+. .+.+++-+-....++-+.+ .+|.+-||-+++.- ..+++.+.+.||||++.
T Consensus 77 ~~gl~~l~~~~~~~--Gl~~~te~~d~~~~~~l~~---~vd~~kIga~~~~n-----------~~LL~~~a~~gkPV~lk 140 (266)
T PRK13398 77 EEGLKILKEVGDKY--NLPVVTEVMDTRDVEEVAD---YADMLQIGSRNMQN-----------FELLKEVGKTKKPILLK 140 (266)
T ss_pred HHHHHHHHHHHHHc--CCCEEEeeCChhhHHHHHH---hCCEEEECcccccC-----------HHHHHHHhcCCCcEEEe
Confidence 56788888888654 5778888877776665554 47999999666532 44667777899999997
Q ss_pred ehhhHhhhcCCCCChHhHHHHHHHHH-hccceEEe--ccccCCCCCHHHHHHH
Q 008112 381 TNMLESMIVHPTPTRAEVSDIAIAVR-EGADAVML--SGETAHGKFPLKAVKV 430 (577)
Q Consensus 381 Tq~LeSM~~~~~PtrAEv~Dv~nav~-~G~D~imL--s~ETa~G~yP~eaV~~ 430 (577)
|.|. .+-.|+..++..+. .|-.-++| .|=....+||.+.+.+
T Consensus 141 ~G~~--------~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl 185 (266)
T PRK13398 141 RGMS--------ATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDL 185 (266)
T ss_pred CCCC--------CCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHH
Confidence 7654 35678877777665 56654444 3322345888665554
No 207
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=69.34 E-value=92 Score=31.59 Aligned_cols=135 Identities=13% Similarity=0.192 Sum_probs=74.0
Q ss_pred cCHHHHHHHHhcCCCEEEEcC--CCCHHHHHHHHHHHHhcCCCceE-------EEeecCh-hhHhhHHHHHH----h-cC
Q 008112 277 KDWDDIKFGVDNKVDFYAVSF--VKDAQVVHELKNYLKSCGADIHV-------IVKIESA-DSIPNLHSIIT----A-SD 341 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~Sf--V~sa~dv~~lr~~l~~~~~~i~I-------iaKIEt~-~gv~NldeIl~----~-sD 341 (577)
.+.+|++..++.|++.+.+.- .++++-+.++.+.+ +.++.+ ..|+.-. +.-.+..++++ . ++
T Consensus 85 rs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~---~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~ 161 (241)
T PRK14024 85 RDDESLEAALATGCARVNIGTAALENPEWCARVIAEH---GDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCS 161 (241)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHh---hhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCC
Confidence 567999999999999876653 46666666665544 333221 1111000 01112333333 2 56
Q ss_pred EEEEc-CCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCC
Q 008112 342 GAMVA-RGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAH 420 (577)
Q Consensus 342 GImIa-RGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~ 420 (577)
.+++- |.==|..-|+ ++..+ ++ .++....|+|.+..+. +..++.++.+....|+|++|+..---.
T Consensus 162 ~iiv~~~~~~g~~~G~-d~~~i-~~---i~~~~~ipviasGGi~---------s~~D~~~l~~~~~~GvdgV~igra~~~ 227 (241)
T PRK14024 162 RYVVTDVTKDGTLTGP-NLELL-RE---VCARTDAPVVASGGVS---------SLDDLRALAELVPLGVEGAIVGKALYA 227 (241)
T ss_pred EEEEEeecCCCCccCC-CHHHH-HH---HHhhCCCCEEEeCCCC---------CHHHHHHHhhhccCCccEEEEeHHHHc
Confidence 66654 2222222333 33222 33 3445689999866543 555544444333469999999866667
Q ss_pred CCCHHHHH
Q 008112 421 GKFPLKAV 428 (577)
Q Consensus 421 G~yP~eaV 428 (577)
|.++++-.
T Consensus 228 g~~~~~~~ 235 (241)
T PRK14024 228 GAFTLPEA 235 (241)
T ss_pred CCCCHHHH
Confidence 88887654
No 208
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=69.22 E-value=1e+02 Score=31.88 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccC
Q 008112 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (577)
Q Consensus 365 ~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~ 444 (577)
-+...|++.|.|+.+. .|..+...-+...-..|++.+...+... + ...++++...++.++-+..++.
T Consensus 67 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~Ga~v~~~~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~ 133 (291)
T cd01561 67 GLAMVAAAKGYRFIIV-----------MPETMSEEKRKLLRALGAEVILTPEAEA-D-GMKGAIAKARELAAETPNAFWL 133 (291)
T ss_pred HHHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCCCc-C-CHHHHHHHHHHHHhhCCCcEEe
Confidence 4566899999998774 2333334456667778999887753211 1 1356777766665442111111
Q ss_pred CCCCCCCCcccCCChhHHHH-HHHHHHHhhcC--c-eEEEEcCChHHHHH----HHhhCCCCeEEEEcCcH
Q 008112 445 GAMPPNLGQAFKNHMSEMFA-YHATMMSNTLG--T-SIVVFTRTGFMAIL----LSHYRPSGTIFAFTNEK 507 (577)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~ia-~~a~~~a~~~~--a-aIiV~T~sG~tA~~----is~~RP~~PIIAvT~~~ 507 (577)
.. +.+ ....+.-. .-+.++.++++ . .||+.+-+|.++-- +..+.|...|+++-+..
T Consensus 134 ~~-~~~------p~~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~ 197 (291)
T cd01561 134 NQ-FEN------PANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVG 197 (291)
T ss_pred cC-CCC------chHHHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 11 111 01112222 33567777776 3 89999999987644 44567999999999874
No 209
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=69.15 E-value=84 Score=32.49 Aligned_cols=118 Identities=9% Similarity=0.066 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhcccc
Q 008112 364 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATIT 443 (577)
Q Consensus 364 k~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~ 443 (577)
..+...|+..|.++++-. |....-.-+...-..|++.+...+ . ..++++...+++.+-. .++
T Consensus 78 ~alA~~a~~~G~~~~ivv-----------p~~~~~~k~~~l~~~Ga~vi~~~~-----~-~~~~~~~a~~la~~~~-~~~ 139 (304)
T cd01562 78 QGVAYAAKLLGIPATIVM-----------PETAPAAKVDATRAYGAEVVLYGE-----D-FDEAEAKARELAEEEG-LTF 139 (304)
T ss_pred HHHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCC-----C-HHHHHHHHHHHHHhcC-CEE
Confidence 356678999999998743 222222335567789999877753 2 3466666666655422 222
Q ss_pred CCCCCCCCCcccCCChhHHHHHHHHHHHhhcC-c-eEEEEcCChHHHHHHHhh----CCCCeEEEEcCc
Q 008112 444 GGAMPPNLGQAFKNHMSEMFAYHATMMSNTLG-T-SIVVFTRTGFMAILLSHY----RPSGTIFAFTNE 506 (577)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~-a-aIiV~T~sG~tA~~is~~----RP~~PIIAvT~~ 506 (577)
..+ +.+ + ........-+.++..+++ . .||+.+-||.|..-++++ .|...|+++.+.
T Consensus 140 ~~~-~~n---~---~~~~g~~~~~~Ei~~q~~~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~ 201 (304)
T cd01562 140 IHP-FDD---P---DVIAGQGTIGLEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPE 201 (304)
T ss_pred eCC-CCC---c---chhccHHHHHHHHHHhcCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 111 111 1 111222334567777765 4 889999999987766655 788999999985
No 210
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=69.05 E-value=87 Score=30.33 Aligned_cols=103 Identities=19% Similarity=0.229 Sum_probs=58.6
Q ss_pred CHHHHHHHHhcCCCEEEEcCCC-C-HH---HHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCcc
Q 008112 278 DWDDIKFGVDNKVDFYAVSFVK-D-AQ---VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLG 351 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~SfV~-s-a~---dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg 351 (577)
-.+.++.+++.|+++|-+-.-. + .+ .++++++.... .++.++.. +.++...+. +||+.+.-.|+
T Consensus 23 ~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~-------~~~~~a~~~gad~vh~~~~~~- 92 (212)
T PRK00043 23 LLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRR--YGVPLIVN-------DRVDLALAVGADGVHLGQDDL- 92 (212)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHH--hCCeEEEe-------ChHHHHHHcCCCEEecCcccC-
Confidence 3456788899999999774321 1 12 23333333322 34545442 345555554 88887753321
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 352 AELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 352 ~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
. ...++..+..++.+++++ +|..| +..+...|+|.+.++
T Consensus 93 ------~-----~~~~~~~~~~~~~~g~~~-----------~t~~e---~~~a~~~gaD~v~~~ 131 (212)
T PRK00043 93 ------P-----VADARALLGPDAIIGLST-----------HTLEE---AAAALAAGADYVGVG 131 (212)
T ss_pred ------C-----HHHHHHHcCCCCEEEEeC-----------CCHHH---HHHHhHcCCCEEEEC
Confidence 1 112234445677777654 35545 567778999999985
No 211
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=69.03 E-value=1.7e+02 Score=32.18 Aligned_cols=147 Identities=15% Similarity=0.237 Sum_probs=82.7
Q ss_pred CccCHHHHH-HHHhcCCCEEEEcC----C-----------CCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHH
Q 008112 275 TEKDWDDIK-FGVDNKVDFYAVSF----V-----------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT 338 (577)
Q Consensus 275 tekD~~dI~-~al~~gvD~I~~Sf----V-----------~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~ 338 (577)
++.|+.++. ..-+.|+|+|-+.| . ++++-+.++-+.+... .++++++||= + -+.++.++++
T Consensus 125 s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~-~~iPv~vKLs-P-n~t~i~~ia~ 201 (385)
T PLN02495 125 NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK-ATVPVWAKMT-P-NITDITQPAR 201 (385)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh-hcCceEEEeC-C-ChhhHHHHHH
Confidence 556666554 44467899987655 2 4566676665555443 3589999995 3 3445666665
Q ss_pred h-----cCEEEEc-----CCCccCCC----C----------CC---cHHHHHHHHHHHHHHc------CCceEEEehhhH
Q 008112 339 A-----SDGAMVA-----RGDLGAEL----P----------IE---EVPLLQEEIIRTCRSM------GKAVIVATNMLE 385 (577)
Q Consensus 339 ~-----sDGImIa-----RGDLg~el----g----------~e---~v~~~qk~Ii~~c~~a------GKPvi~ATq~Le 385 (577)
+ +|||..- +-++-++. + +. --|.+...+-+.+++. +.|+|-...+.
T Consensus 202 aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~- 280 (385)
T PLN02495 202 VALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVE- 280 (385)
T ss_pred HHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCC-
Confidence 3 7877653 11110010 0 11 1233333332233332 47776555433
Q ss_pred hhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCC-HHHHHHHHHHHHHHHhccc
Q 008112 386 SMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF-PLKAVKVMHTVSLRTEATI 442 (577)
Q Consensus 386 SM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~y-P~eaV~~m~~I~~~aE~~~ 442 (577)
--.|++.+++.|||+|++. |+.-.+ |-- +.+|+++.++.+
T Consensus 281 -----------s~~Da~e~i~aGAs~VQv~--Ta~~~~Gp~v----i~~i~~~L~~~m 321 (385)
T PLN02495 281 -----------TGGDAAEFILLGADTVQVC--TGVMMHGYPL----VKNLCAELQDFM 321 (385)
T ss_pred -----------CHHHHHHHHHhCCCceeEe--eeeeecCcHH----HHHHHHHHHHHH
Confidence 3468999999999999997 455455 533 444455554443
No 212
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=69.02 E-value=76 Score=30.88 Aligned_cols=116 Identities=18% Similarity=0.162 Sum_probs=65.2
Q ss_pred CccCHHHHHHHHhcCCCEEEEc--CCCC---HHHHHHHHHHHHhcCCCceEEE--eecChhhHhhHHHHHHh-cCEEEEc
Q 008112 275 TEKDWDDIKFGVDNKVDFYAVS--FVKD---AQVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITA-SDGAMVA 346 (577)
Q Consensus 275 tekD~~dI~~al~~gvD~I~~S--fV~s---a~dv~~lr~~l~~~~~~i~Iia--KIEt~~gv~NldeIl~~-sDGImIa 346 (577)
+.++...+-.+++.|+|+|=+. + .+ .+.++++++. . .+..+++ |+-++... .+++..+. +|.|.+-
T Consensus 10 ~~~~a~~~~~~l~~~v~~iev~~~l-~~~~g~~~i~~l~~~---~-~~~~i~~d~k~~d~~~~-~~~~~~~~Gad~i~vh 83 (206)
T TIGR03128 10 DIEEALELAEKVADYVDIIEIGTPL-IKNEGIEAVKEMKEA---F-PDRKVLADLKTMDAGEY-EAEQAFAAGADIVTVL 83 (206)
T ss_pred CHHHHHHHHHHcccCeeEEEeCCHH-HHHhCHHHHHHHHHH---C-CCCEEEEEEeeccchHH-HHHHHHHcCCCEEEEe
Confidence 4455555656668899988773 3 22 3334444432 1 1233443 44444321 45665555 8877764
Q ss_pred CCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 347 RGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 347 RGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
- +.+ ...-+++++.|+++|++++.+-. .|.. -..++..+...|+|.+.+.
T Consensus 84 ~-----~~~----~~~~~~~i~~~~~~g~~~~~~~~---------~~~t-~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 84 G-----VAD----DATIKGAVKAAKKHGKEVQVDLI---------NVKD-KVKRAKELKELGADYIGVH 133 (206)
T ss_pred c-----cCC----HHHHHHHHHHHHHcCCEEEEEec---------CCCC-hHHHHHHHHHcCCCEEEEc
Confidence 1 112 12347789999999999997410 1211 1234556667799988774
No 213
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=68.92 E-value=46 Score=33.89 Aligned_cols=72 Identities=10% Similarity=0.167 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCC
Q 008112 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIE 357 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e 357 (577)
...+..-.+.|+|+|.+- ++...++.++-+++++.|.+..+.-+=+|+ ++.++.++..+|.|++ ++++=|+.
T Consensus 74 ~~~i~~fa~agad~It~H-~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp--~~~i~~~l~~vD~Vll----MsVnPGfg 145 (220)
T COG0036 74 DRYIEAFAKAGADIITFH-AEATEHIHRTIQLIKELGVKAGLVLNPATP--LEALEPVLDDVDLVLL----MSVNPGFG 145 (220)
T ss_pred HHHHHHHHHhCCCEEEEE-eccCcCHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhhCCEEEE----EeECCCCc
Confidence 455666678999999764 578889999999999999999999999996 7899999999999998 66666654
No 214
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.92 E-value=17 Score=38.45 Aligned_cols=65 Identities=8% Similarity=0.058 Sum_probs=51.0
Q ss_pred cCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhH--hhHHHHHHh-cCEEEEc
Q 008112 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVA 346 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-sDGImIa 346 (577)
...++...+++.|+|.|.+=... +++++++.+.++..+.++ +||---|+ +|+.++++. +|+|.+|
T Consensus 207 ~tl~ea~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~~~v----~ieaSGGI~~~ni~~yA~tGvD~Is~g 274 (289)
T PRK07896 207 DSLEQLDEVLAEGAELVLLDNFP-VWQTQEAVQRRDARAPTV----LLESSGGLTLDTAAAYAETGVDYLAVG 274 (289)
T ss_pred CCHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccCCCE----EEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 35667888899999999999875 899999988776655554 45555454 588888888 9999987
No 215
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=68.91 E-value=35 Score=35.15 Aligned_cols=97 Identities=19% Similarity=0.139 Sum_probs=58.9
Q ss_pred HHHHHHHhcCCCEEEEcC------CCCHHHHHHHHHH-HHhcCCCceEEEeecC---hhhHhhHHHHHHh-cCEEEEcCC
Q 008112 280 DDIKFGVDNKVDFYAVSF------VKDAQVVHELKNY-LKSCGADIHVIVKIES---ADSIPNLHSIITA-SDGAMVARG 348 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~Sf------V~sa~dv~~lr~~-l~~~~~~i~IiaKIEt---~~gv~NldeIl~~-sDGImIaRG 348 (577)
+.+++.++.|+++|++.= --|.++=+++.+. .+..+.++.|++-+-. .++++......+. +|+||+.+-
T Consensus 25 ~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P 104 (284)
T cd00950 25 RLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTP 104 (284)
T ss_pred HHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccc
Confidence 456788999999997651 2244444444443 3444557888888854 3444444444444 899999865
Q ss_pred CccCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 349 DLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
...- .+-+.+...-+.|.+ +.+.|+++.
T Consensus 105 ~~~~-~~~~~l~~~~~~ia~---~~~~pi~lY 132 (284)
T cd00950 105 YYNK-PSQEGLYAHFKAIAE---ATDLPVILY 132 (284)
T ss_pred ccCC-CCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 5421 222345555555555 468999975
No 216
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=68.86 E-value=1.1e+02 Score=29.38 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=76.2
Q ss_pred HHHHHHHhcCCCEEEE-----cCCCCH----HHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCC
Q 008112 280 DDIKFGVDNKVDFYAV-----SFVKDA----QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGD 349 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~-----SfV~sa----~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGD 349 (577)
+.++.+.+.|+|+|-+ +|+.+. +.++++++.. +....+..++.++ .+.++.+.+. +||+.|-=
T Consensus 16 ~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~~~~~v~l~~~d~--~~~~~~~~~~g~dgv~vh~-- 88 (211)
T cd00429 16 EELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT---DLPLDVHLMVENP--ERYIEAFAKAGADIITFHA-- 88 (211)
T ss_pred HHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC---CCcEEEEeeeCCH--HHHHHHHHHcCCCEEEECc--
Confidence 3467788899999998 776444 4555555433 2223344666554 3346666655 89987731
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEecc--ccCCC-CCHHH
Q 008112 350 LGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG--ETAHG-KFPLK 426 (577)
Q Consensus 350 Lg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~--ETa~G-~yP~e 426 (577)
... ....+.++.+++.|..+++.+.. .|..| ....+..++|.+++.+ .|..| .++..
T Consensus 89 -----~~~---~~~~~~~~~~~~~~~~~g~~~~~---------~~~~~---~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 148 (211)
T cd00429 89 -----EAT---DHLHRTIQLIKELGMKAGVALNP---------GTPVE---VLEPYLDEVDLVLVMSVNPGFGGQKFIPE 148 (211)
T ss_pred -----cch---hhHHHHHHHHHHCCCeEEEEecC---------CCCHH---HHHHHHhhCCEEEEEEECCCCCCcccCHH
Confidence 111 12245588889999988875421 01111 2233345578876532 13233 56767
Q ss_pred HHHHHHHHHHHHh
Q 008112 427 AVKVMHTVSLRTE 439 (577)
Q Consensus 427 aV~~m~~I~~~aE 439 (577)
..+.++++.+...
T Consensus 149 ~~~~i~~~~~~~~ 161 (211)
T cd00429 149 VLEKIRKLRELIP 161 (211)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776655553
No 217
>PRK15447 putative protease; Provisional
Probab=68.81 E-value=29 Score=36.55 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=54.9
Q ss_pred HhhHHHHH-H-hcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHh
Q 008112 330 IPNLHSII-T-ASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVRE 407 (577)
Q Consensus 330 v~NldeIl-~-~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~ 407 (577)
++++-.-+ + -+|+|.+|-..++.-.++ -..-.+++++.|+++||.++++|+-+ .....|...+...+..
T Consensus 17 ~~~~~~~~~~~gaDaVY~g~~~~~~R~~f--~~~~l~e~v~~~~~~gkkvyva~p~i-------~~~~~e~~~l~~~l~~ 87 (301)
T PRK15447 17 VRDFYQRAADSPVDIVYLGETVCSKRREL--KVGDWLELAERLAAAGKEVVLSTLAL-------VEAPSELKELRRLVEN 87 (301)
T ss_pred HHHHHHHHHcCCCCEEEECCccCCCccCC--CHHHHHHHHHHHHHcCCEEEEEeccc-------ccCHHHHHHHHHHHhc
Confidence 34444444 3 299999997777766544 33556788899999999999988543 1124588888888888
Q ss_pred ccceEEec
Q 008112 408 GADAVMLS 415 (577)
Q Consensus 408 G~D~imLs 415 (577)
|.|+|+.+
T Consensus 88 ~~~~v~v~ 95 (301)
T PRK15447 88 GEFLVEAN 95 (301)
T ss_pred CCCEEEEe
Confidence 99988864
No 218
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=68.75 E-value=89 Score=31.55 Aligned_cols=131 Identities=12% Similarity=0.188 Sum_probs=76.4
Q ss_pred cCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhh-------HhhHHHHHH----hcCEEEE
Q 008112 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS-------IPNLHSIIT----ASDGAMV 345 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~g-------v~NldeIl~----~sDGImI 345 (577)
.+.+|++..++.|++-|.+.-. ...+ ..+++.+...+.+ .+++-|....+ ..++.+.++ .++.+++
T Consensus 88 r~~edv~~~l~~Ga~~viigt~-~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 164 (233)
T cd04723 88 RSLENAQEWLKRGASRVIVGTE-TLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELIV 164 (233)
T ss_pred CCHHHHHHHHHcCCCeEEEcce-eccc-hHHHHHHHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeEEE
Confidence 4588999999999998877643 3444 5566666555542 35555555443 223444433 3566776
Q ss_pred cCCCccCCCCCC--cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCC
Q 008112 346 ARGDLGAELPIE--EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 423 (577)
Q Consensus 346 aRGDLg~elg~e--~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~y 423 (577)
. |+..+-... .+ ..-+++ ++....|++.+..+- +. .|+..+...|+|++++..==-.|++
T Consensus 165 ~--di~~~G~~~g~~~-~~~~~i---~~~~~ipvi~~GGi~---------s~---edi~~l~~~G~~~vivGsal~~g~~ 226 (233)
T cd04723 165 L--DIDRVGSGQGPDL-ELLERL---AARADIPVIAAGGVR---------SV---EDLELLKKLGASGALVASALHDGGL 226 (233)
T ss_pred E--EcCccccCCCcCH-HHHHHH---HHhcCCCEEEeCCCC---------CH---HHHHHHHHcCCCEEEEehHHHcCCC
Confidence 4 443322111 22 222333 445689999876533 33 4566666779999998755555666
Q ss_pred HHHHH
Q 008112 424 PLKAV 428 (577)
Q Consensus 424 P~eaV 428 (577)
+.+.+
T Consensus 227 ~~~~~ 231 (233)
T cd04723 227 TLEDV 231 (233)
T ss_pred CHHHH
Confidence 65543
No 219
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=68.62 E-value=41 Score=36.59 Aligned_cols=90 Identities=16% Similarity=0.218 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 008112 302 QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (577)
Q Consensus 302 ~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~AT 381 (577)
+....++++.++. .+.+++-+-....++-+ .+.+|.+.||-+++.- -.++..+.+.||||++.|
T Consensus 169 e~l~~L~~~~~~~--Gl~~~t~v~d~~~~~~l---~~~vd~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk~ 232 (360)
T PRK12595 169 EGLKILKQVADEY--GLAVISEIVNPADVEVA---LDYVDVIQIGARNMQN-----------FELLKAAGRVNKPVLLKR 232 (360)
T ss_pred HHHHHHHHHHHHc--CCCEEEeeCCHHHHHHH---HHhCCeEEECcccccC-----------HHHHHHHHccCCcEEEeC
Confidence 5677778877654 46788877776655544 4459999999777633 357777888999999987
Q ss_pred hhhHhhhcCCCCChHhHHHHHHHHH-hccceEEec
Q 008112 382 NMLESMIVHPTPTRAEVSDIAIAVR-EGADAVMLS 415 (577)
Q Consensus 382 q~LeSM~~~~~PtrAEv~Dv~nav~-~G~D~imLs 415 (577)
.|. .|-.|+...++.+. .|.+-++|.
T Consensus 233 G~~--------~t~~e~~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 233 GLS--------ATIEEFIYAAEYIMSQGNGQIILC 259 (360)
T ss_pred CCC--------CCHHHHHHHHHHHHHCCCCCEEEE
Confidence 764 57788888888776 577556665
No 220
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=68.46 E-value=89 Score=31.46 Aligned_cols=144 Identities=17% Similarity=0.184 Sum_probs=88.9
Q ss_pred CCCCccCHHHH-HHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh--------cCE
Q 008112 272 PSITEKDWDDI-KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--------SDG 342 (577)
Q Consensus 272 p~ltekD~~dI-~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~--------sDG 342 (577)
|..|+.|.+.+ +.+.++|+..|++ ++..+..+++.|. +.++++.+=|=-|.|-...+.-+.. +|.
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv----~p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdE 86 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCV----NPSYVPLAKELLK--GTEVRICTVVGFPLGASTTDVKLYETKEAIKYGADE 86 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEe----CHHHHHHHHHHcC--CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 56677775554 6788889988887 4778999998884 5578888888888777665444432 332
Q ss_pred EEEcCCCccCCCCC---CcHHHHHHHHHHHHHH-cCCceEEEehhhHhhhcCCCCChHhHHHHHH-HHHhccceEEeccc
Q 008112 343 AMVARGDLGAELPI---EEVPLLQEEIIRTCRS-MGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSGE 417 (577)
Q Consensus 343 ImIaRGDLg~elg~---e~v~~~qk~Ii~~c~~-aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~n-av~~G~D~imLs~E 417 (577)
|= +-+.++. .+...+.++|-+.+.. .|+|+-+ ++|. +.-+..|+..... ++..|+|.|=-|
T Consensus 87 iD-----vv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKv---IlE~----~~L~~~ei~~a~~ia~eaGADfvKTs-- 152 (211)
T TIGR00126 87 VD-----MVINIGALKDGNEEVVYDDIRAVVEACAGVLLKV---IIET----GLLTDEEIRKACEICIDAGADFVKTS-- 152 (211)
T ss_pred EE-----eecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEE---EEec----CCCCHHHHHHHHHHHHHhCCCEEEeC--
Confidence 21 1222321 2344444443333332 2788655 3432 3345567665555 788899998765
Q ss_pred cCCCCC----HHHHHHHHHHHHHH
Q 008112 418 TAHGKF----PLKAVKVMHTVSLR 437 (577)
Q Consensus 418 Ta~G~y----P~eaV~~m~~I~~~ 437 (577)
.|.. -.+.|+.|++++..
T Consensus 153 --TGf~~~gat~~dv~~m~~~v~~ 174 (211)
T TIGR00126 153 --TGFGAGGATVEDVRLMRNTVGD 174 (211)
T ss_pred --CCCCCCCCCHHHHHHHHHHhcc
Confidence 4533 35788888877653
No 221
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=68.27 E-value=86 Score=32.63 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=73.6
Q ss_pred HHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCC-CcH
Q 008112 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPI-EEV 359 (577)
Q Consensus 281 dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~-e~v 359 (577)
-++.+.+.|+|++++|=.- .++-.++++.+.+.| +..|.-|=-...-+.+..|.+.++|.+=.-.=.|+ .|. ..+
T Consensus 107 F~~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~g--l~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~Gv-TG~~~~~ 182 (259)
T PF00290_consen 107 FFKEAKEAGVDGLIIPDLP-PEESEELREAAKKHG--LDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGV-TGSRTEL 182 (259)
T ss_dssp HHHHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT---EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSS-SSTTSSC
T ss_pred HHHHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcC--CeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCC-CCCcccc
Confidence 4566778999999999764 356677778777654 45555554445667899999988766543222333 222 245
Q ss_pred HHHHHHHHHHHHHcC-CceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 360 PLLQEEIIRTCRSMG-KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 360 ~~~qk~Ii~~c~~aG-KPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
+.-.+..++..+++. +|+.+-- ..-+++. +.... .|+|++...
T Consensus 183 ~~~l~~~i~~ik~~~~~Pv~vGF---------GI~~~e~---~~~~~-~~aDGvIVG 226 (259)
T PF00290_consen 183 PDELKEFIKRIKKHTDLPVAVGF---------GISTPEQ---AKKLA-AGADGVIVG 226 (259)
T ss_dssp HHHHHHHHHHHHHTTSS-EEEES---------SS-SHHH---HHHHH-TTSSEEEES
T ss_pred hHHHHHHHHHHHhhcCcceEEec---------CCCCHHH---HHHHH-ccCCEEEEC
Confidence 666677777777765 8887632 2334444 44444 999999984
No 222
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=68.18 E-value=35 Score=32.77 Aligned_cols=129 Identities=13% Similarity=0.180 Sum_probs=77.1
Q ss_pred eecCCCCcccccccccccccccccccccccccCCCCCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCCh---
Q 008112 70 VPVSPEDVPKRDGEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDH--- 146 (577)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~--- 146 (577)
+|++||.-..|+++|++|.. .. ++..+.+-+| -+||+.
T Consensus 6 ~~lT~eg~~~L~~EL~~L~~-~r------------------------------~~i~~~i~~A--------r~~GDlsEN 46 (158)
T PRK05892 6 KGLAPAARDHLEAELARLRA-RR------------------------------DRLAVEVNDR--------GMIGDHGDQ 46 (158)
T ss_pred CccCHHHHHHHHHHHHHHHH-Hh------------------------------HHHHHHHHHH--------HhCCCcchh
Confidence 57889988899999988865 22 2233333333 345543
Q ss_pred -------HHHHHHHHHHHHHHHhcCCCeeEEEeecCCCeeEEeecCCcEEE--cCCCEEEEEEec---CCC---CceEEe
Q 008112 147 -------ASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPITL--TSGQEFTFTIQR---GVG---SAECVS 211 (577)
Q Consensus 147 -------e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~~i~L--~~G~~v~lt~~~---~~~---~~~~i~ 211 (577)
+....+-..||++...+. . .-|. +....+++.|.. +.| ..|+..+|+.-. ... ..+.|+
T Consensus 47 aey~aak~~q~~~e~RI~~L~~~L~-~-A~ii-~~~~~~V~~Gs~---Vtl~~~~g~~~~~~IVg~~e~d~~~~~~~~IS 120 (158)
T PRK05892 47 AEAIQRADELARLDDRINELDRRLR-T-GPTP-WSGSETLPGGTE---VTLRFPDGEVETMHVISVVEETPVGREAETLT 120 (158)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-h-CEEe-cCCCCEEEcCcE---EEEEECCCCEEEEEEeCchhcCcccccCCEEc
Confidence 223333444666665554 2 2222 666678888865 434 457777666531 111 245677
Q ss_pred cccc--ccccccCCCCEEEEe--CCeEEEEEEEEeC
Q 008112 212 VNYD--DFVNDVEVGDMLLVD--GGMMSLLVKSKTE 243 (577)
Q Consensus 212 v~~~--~~~~~v~~Gd~I~id--DG~i~l~V~~v~~ 243 (577)
+..| .-+=.-++||.|.+. +|...++|.++..
T Consensus 121 ~~SPlG~ALlGk~vGD~v~v~~p~g~~~~eI~~I~~ 156 (158)
T PRK05892 121 ADSPLGQALAGHQAGDTVTYSTPQGPAQVELLAVKL 156 (158)
T ss_pred cCCHHHHHHhCCCCCCEEEEEcCCCcEEEEEEEEEc
Confidence 6655 122245899999985 7889999988753
No 223
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=68.18 E-value=17 Score=36.28 Aligned_cols=117 Identities=16% Similarity=0.221 Sum_probs=73.8
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCC--
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIE-- 357 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e-- 357 (577)
..++.-.+.|+|+|.+. +++.+++.++-+++++.|.+..|..+-+| .++.++.++...|.|++ ++++-|..
T Consensus 71 ~~i~~~~~~g~~~i~~H-~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~~~~~~~l~~vD~Vlv----MsV~PG~~Gq 143 (201)
T PF00834_consen 71 RYIEEFAEAGADYITFH-AEATEDPKETIKYIKEAGIKAGIALNPET--PVEELEPYLDQVDMVLV----MSVEPGFGGQ 143 (201)
T ss_dssp GHHHHHHHHT-SEEEEE-GGGTTTHHHHHHHHHHTTSEEEEEE-TTS---GGGGTTTGCCSSEEEE----ESS-TTTSSB
T ss_pred HHHHHHHhcCCCEEEEc-ccchhCHHHHHHHHHHhCCCEEEEEECCC--CchHHHHHhhhcCEEEE----EEecCCCCcc
Confidence 45666778999988765 46778899999999999998888888888 57889999999999998 66776654
Q ss_pred -cHHHHH---HHHHHHHHHcCCceEEEehhhHhhhcCC-CCChHhHHHHHHHHHhccceEEec
Q 008112 358 -EVPLLQ---EEIIRTCRSMGKAVIVATNMLESMIVHP-TPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 358 -~v~~~q---k~Ii~~c~~aGKPvi~ATq~LeSM~~~~-~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
-.+..- +++-+...++|..+.+. +... .+.. +......|+|.+.+.
T Consensus 144 ~f~~~~~~KI~~l~~~~~~~~~~~~I~-------vDGGI~~~~-----~~~~~~aGad~~V~G 194 (201)
T PF00834_consen 144 KFIPEVLEKIRELRKLIPENGLDFEIE-------VDGGINEEN-----IKQLVEAGADIFVAG 194 (201)
T ss_dssp --HGGHHHHHHHHHHHHHHHTCGSEEE-------EESSESTTT-----HHHHHHHT--EEEES
T ss_pred cccHHHHHHHHHHHHHHHhcCCceEEE-------EECCCCHHH-----HHHHHHcCCCEEEEC
Confidence 122222 33333344444443321 1111 1222 446777899988764
No 224
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=68.03 E-value=1.1e+02 Score=28.83 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=30.4
Q ss_pred CChHhHHHHHHHHHhccceEEeccccCCCCC----HHHHHHHHHHHHHHH
Q 008112 393 PTRAEVSDIAIAVREGADAVMLSGETAHGKF----PLKAVKVMHTVSLRT 438 (577)
Q Consensus 393 PtrAEv~Dv~nav~~G~D~imLs~ETa~G~y----P~eaV~~m~~I~~~a 438 (577)
+++.-+..+..+...|+|++++..- .+.. +.+.++....++.++
T Consensus 63 ~~~~~~~~a~~a~~~Gad~i~v~~~--~~~~~~~~~~~~~~~~~~i~~~~ 110 (201)
T cd00945 63 TTEVKVAEVEEAIDLGADEIDVVIN--IGSLKEGDWEEVLEEIAAVVEAA 110 (201)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecc--HHHHhCCCHHHHHHHHHHHHHHh
Confidence 3566667778899999999998521 1111 456678888888876
No 225
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.99 E-value=30 Score=35.13 Aligned_cols=110 Identities=18% Similarity=0.228 Sum_probs=72.5
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEEEEcCC--------CccCCCCCC-
Q 008112 291 DFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARG--------DLGAELPIE- 357 (577)
Q Consensus 291 D~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGImIaRG--------DLg~elg~e- 357 (577)
-.|.+=...++++..++.+.+-+.|-. .+=.-.-|+.+++.+.++.+. .+.++||-| +..++.|.+
T Consensus 16 ~vi~Vvr~~~~~~a~~~~~al~~gGi~-~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~F 94 (222)
T PRK07114 16 GMVPVFYHADVEVAKKVIKACYDGGAR-VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANF 94 (222)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCC-EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCE
Confidence 345555567888888888887766544 233345677888888877633 345788865 222222222
Q ss_pred -cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 358 -EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 358 -~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
--|..-..+++.|+++|.|++ |--.--+++..|...|+|.+=|=
T Consensus 95 iVsP~~~~~v~~~~~~~~i~~i--------------PG~~TpsEi~~A~~~Ga~~vKlF 139 (222)
T PRK07114 95 IVTPLFNPDIAKVCNRRKVPYS--------------PGCGSLSEIGYAEELGCEIVKLF 139 (222)
T ss_pred EECCCCCHHHHHHHHHcCCCEe--------------CCCCCHHHHHHHHHCCCCEEEEC
Confidence 223455789999999999987 22223345889999999999884
No 226
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=67.82 E-value=9.4 Score=43.49 Aligned_cols=124 Identities=15% Similarity=0.204 Sum_probs=74.8
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHHh-------cCCCceEEEeecChhhHhhHHHHHHh----cCEEEEc------------
Q 008112 290 VDFYAVSFVKDAQVVHELKNYLKS-------CGADIHVIVKIESADSIPNLHSIITA----SDGAMVA------------ 346 (577)
Q Consensus 290 vD~I~~SfV~sa~dv~~lr~~l~~-------~~~~i~IiaKIEt~~gv~NldeIl~~----sDGImIa------------ 346 (577)
-=|+.+|+.+++++++--.+.+.. ...-+++.+.|||..|.=|++||+-. +-|+=.|
T Consensus 204 gpYfylPKme~~~EA~lwn~vF~~~E~~Lglp~gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~Ik~~ 283 (526)
T PF01274_consen 204 GPYFYLPKMESHEEARLWNDVFSFAEDLLGLPRGTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSEIKTF 283 (526)
T ss_dssp SEEEEE-S-SSHHHHHHHHHHHHHHHHHHTSSTTSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHHHHHT
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHHHHHh
Confidence 346779999999999887765532 12348899999999999999999975 2244444
Q ss_pred ----------CCCccCCCCCCcHHHHHHHHHHHHHHcCCceE--EEehhhH--hhhcCCCCChHhHHHHHHHHHhccceE
Q 008112 347 ----------RGDLGAELPIEEVPLLQEEIIRTCRSMGKAVI--VATNMLE--SMIVHPTPTRAEVSDIAIAVREGADAV 412 (577)
Q Consensus 347 ----------RGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi--~ATq~Le--SM~~~~~PtrAEv~Dv~nav~~G~D~i 412 (577)
|..++++.| -+..+.+..+..|++.|...+ ++.++.- -|..++.--..=..|=..-+.+|+||-
T Consensus 284 ~~~~~~vlPdR~~v~m~~p--fm~aY~~llv~tch~Rga~a~gGmaa~ip~~~d~~~~~~a~~~v~~dK~rE~~~G~dg~ 361 (526)
T PF01274_consen 284 RNRPDFVLPDRKQVTMTQP--FMRAYEDLLVRTCHRRGAHAMGGMAAFIPIGKDPWANPDAMAKVRADKEREAKAGFDGA 361 (526)
T ss_dssp CCGCCBB---GGGGGCGSH--HHHHHHHHHHHHHHHTT-HHHTTCTTTSEEEEEEHHBTTCHHHHHHHTHHHHHTT-SEE
T ss_pred hhCCCccccccccccccCH--HHHHHHHHHHHHHhhcCCccccCCccccCCCCChhhhHHHHHHHHHHHHHHHhcCCCcc
Confidence 344444444 377788899999999886642 2222210 011112111111233344788999999
Q ss_pred Eec
Q 008112 413 MLS 415 (577)
Q Consensus 413 mLs 415 (577)
+.-
T Consensus 362 WVa 364 (526)
T PF01274_consen 362 WVA 364 (526)
T ss_dssp EES
T ss_pred ccc
Confidence 983
No 227
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=67.66 E-value=1.3e+02 Score=31.06 Aligned_cols=113 Identities=17% Similarity=0.169 Sum_probs=75.6
Q ss_pred cCHHHHHH-HHhcCCCEEEE-----cCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCC
Q 008112 277 KDWDDIKF-GVDNKVDFYAV-----SFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGD 349 (577)
Q Consensus 277 kD~~dI~~-al~~gvD~I~~-----SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGD 349 (577)
.|..++.. ..+.|++.|.+ -|=.+.+|+..+++.. +++|+.|==-..-. .+++.... +|+|.+.-.+
T Consensus 70 ~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v-----~iPvl~kdfi~~~~-qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 70 FDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV-----SLPVLRKDFIIDPY-QIYEARAAGADAILLIVAA 143 (260)
T ss_pred CCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc-----CCCEEeeeecCCHH-HHHHHHHcCCCEEEEEecc
Confidence 35555544 45679999977 5678999999999864 57777641000111 34444444 8999886555
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccc
Q 008112 350 LGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGE 417 (577)
Q Consensus 350 Lg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~E 417 (577)
|. +.--++++..|+..|.-+++-++ +.+| +..+...|+|.+.+++.
T Consensus 144 l~--------~~~l~~li~~a~~lGl~~lvevh-----------~~~E---~~~A~~~gadiIgin~r 189 (260)
T PRK00278 144 LD--------DEQLKELLDYAHSLGLDVLVEVH-----------DEEE---LERALKLGAPLIGINNR 189 (260)
T ss_pred CC--------HHHHHHHHHHHHHcCCeEEEEeC-----------CHHH---HHHHHHcCCCEEEECCC
Confidence 42 24667899999999999887544 4444 45577789999988643
No 228
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=67.60 E-value=96 Score=29.20 Aligned_cols=125 Identities=18% Similarity=0.126 Sum_probs=65.5
Q ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCC---ccCCC-CC
Q 008112 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGD---LGAEL-PI 356 (577)
Q Consensus 282 I~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGD---Lg~el-g~ 356 (577)
++.+.+.|+|++-++.-.. ....++... +....+-+-+.|. +.+.+.... +|.|++++.. -.... +.
T Consensus 65 ~~~a~~~g~~~vh~~~~~~--~~~~~~~~~---~~~~~~g~~~~t~---~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~ 136 (196)
T cd00564 65 VDLALAVGADGVHLGQDDL--PVAEARALL---GPDLIIGVSTHSL---EEALRAEELGADYVGFGPVFPTPTKPGAGPP 136 (196)
T ss_pred HHHHHHcCCCEEecCcccC--CHHHHHHHc---CCCCEEEeeCCCH---HHHHHHhhcCCCEEEECCccCCCCCCCCCCC
Confidence 4567889999998875322 233333332 2234444444443 233333333 8999987542 11111 11
Q ss_pred CcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHH
Q 008112 357 EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 431 (577)
Q Consensus 357 e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m 431 (577)
..+..+ ++ .+.....|++.+..+ +. .++..+...|+|++.+.+--..-.-|.++++.+
T Consensus 137 ~~~~~~-~~---~~~~~~~pv~a~GGi----------~~---~~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 137 LGLELL-RE---IAELVEIPVVAIGGI----------TP---ENAAEVLAAGADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CCHHHH-HH---HHHhCCCCEEEECCC----------CH---HHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHH
Confidence 112222 22 222357898876442 32 246667778999999865433334477766654
No 229
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=67.13 E-value=9.6 Score=42.44 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=40.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHH
Q 008112 110 TKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (577)
Q Consensus 110 tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 158 (577)
-.+=+.+|..-.+.+..+.|+++|++++-++.+||..+.+.+.|+.+|+
T Consensus 213 l~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~ 261 (450)
T TIGR01302 213 LIVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKK 261 (450)
T ss_pred EEEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHH
Confidence 3445577877778899999999999999999999988877777777764
No 230
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=67.12 E-value=32 Score=37.26 Aligned_cols=81 Identities=26% Similarity=0.318 Sum_probs=57.2
Q ss_pred hhHhhHHHHHHh-cCEEEEcCCCccCCCCCC--cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHh--HHHHH
Q 008112 328 DSIPNLHSIITA-SDGAMVARGDLGAELPIE--EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAE--VSDIA 402 (577)
Q Consensus 328 ~gv~NldeIl~~-sDGImIaRGDLg~elg~e--~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAE--v~Dv~ 402 (577)
..++.+...++. +|.|.+|=-+++.-.... .... .+++++.|+++||-++++.+++= .+..-| ...+.
T Consensus 14 g~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~-l~e~i~~ah~~gkk~~V~~N~~~------~~~~~~~~~~~l~ 86 (347)
T COG0826 14 GNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVED-LAEAVELAHSAGKKVYVAVNTLL------HNDELETLERYLD 86 (347)
T ss_pred CCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHH-HHHHHHHHHHcCCeEEEEecccc------ccchhhHHHHHHH
Confidence 445566666555 899999955777666552 2333 67889999999999999887661 222222 34566
Q ss_pred HHHHhccceEEec
Q 008112 403 IAVREGADAVMLS 415 (577)
Q Consensus 403 nav~~G~D~imLs 415 (577)
.++..|+|++.++
T Consensus 87 ~l~e~GvDaviv~ 99 (347)
T COG0826 87 RLVELGVDAVIVA 99 (347)
T ss_pred HHHHcCCCEEEEc
Confidence 7889999999996
No 231
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=67.08 E-value=1.2e+02 Score=33.08 Aligned_cols=95 Identities=13% Similarity=0.154 Sum_probs=58.4
Q ss_pred ccCHH-HHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhH-----------hhHHHHHHh-cCE
Q 008112 276 EKDWD-DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI-----------PNLHSIITA-SDG 342 (577)
Q Consensus 276 ekD~~-dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv-----------~NldeIl~~-sDG 342 (577)
-.|.+ .++.+.+.|+|.++++ .-.++.+......++.+|.|+-....+ -..++-+.. +|+
T Consensus 90 l~dp~~~i~~a~~~g~dAv~~~-------~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdA 162 (348)
T PRK09250 90 YFDPENIVKLAIEAGCNAVAST-------LGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVA 162 (348)
T ss_pred ccCHHHHHHHHHhcCCCEEEeC-------HHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCE
Confidence 34555 5567788899999998 344444333334568899998875544 135555555 775
Q ss_pred EEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEE
Q 008112 343 AMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIV 379 (577)
Q Consensus 343 ImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ 379 (577)
|-+- -.+|-+.- .+...--.++...|++.|.|++.
T Consensus 163 V~~t-vy~Gs~~E-~~ml~~l~~i~~ea~~~GlPlv~ 197 (348)
T PRK09250 163 VGAT-IYFGSEES-RRQIEEISEAFEEAHELGLATVL 197 (348)
T ss_pred EEEE-EecCCHHH-HHHHHHHHHHHHHHHHhCCCEEE
Confidence 5542 01111111 13444456888999999999875
No 232
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=66.82 E-value=1.3e+02 Score=30.41 Aligned_cols=122 Identities=11% Similarity=0.071 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCCEEEEcC------C--CCHHHHHHHHHHHHhcCCCceEEEe--------e------cChhhHhhHHHH
Q 008112 279 WDDIKFGVDNKVDFYAVSF------V--KDAQVVHELKNYLKSCGADIHVIVK--------I------ESADSIPNLHSI 336 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~Sf------V--~sa~dv~~lr~~l~~~~~~i~IiaK--------I------Et~~gv~NldeI 336 (577)
.+.++.+.+.|+++|=+.+ . -+..+++++++.+++.|-.+..+.- + +..++++.+...
T Consensus 16 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 95 (275)
T PRK09856 16 EHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLA 95 (275)
T ss_pred HHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHH
Confidence 3567788899999988742 1 2346789999998877654332211 0 112234444444
Q ss_pred HHh-----cCEEEEcCCCccCCCCC----CcHHHHHHHHHHHHHHcCCceEEEehhhHhhh---cCCCCChHhHHHHHHH
Q 008112 337 ITA-----SDGAMVARGDLGAELPI----EEVPLLQEEIIRTCRSMGKAVIVATNMLESMI---VHPTPTRAEVSDIAIA 404 (577)
Q Consensus 337 l~~-----sDGImIaRGDLg~elg~----e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~---~~~~PtrAEv~Dv~na 404 (577)
++. ++.|.+..|..+..-.. +.+....+++...|.++|..+.+ |.|- .+..+|.+++.++.+.
T Consensus 96 i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~i-----E~~~~~~~~~~~t~~~~~~l~~~ 170 (275)
T PRK09856 96 MDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLIL-----EPLTPYESNVVCNANDVLHALAL 170 (275)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE-----ecCCCCcccccCCHHHHHHHHHH
Confidence 443 66777776654432221 13444556777778888876654 3321 2335566776666665
Q ss_pred H
Q 008112 405 V 405 (577)
Q Consensus 405 v 405 (577)
+
T Consensus 171 ~ 171 (275)
T PRK09856 171 V 171 (275)
T ss_pred c
Confidence 4
No 233
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=66.43 E-value=37 Score=37.13 Aligned_cols=91 Identities=19% Similarity=0.279 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHH---HHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHc--
Q 008112 300 DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLH---SIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSM-- 373 (577)
Q Consensus 300 sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~Nld---eIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~a-- 373 (577)
+-++++++++.. +.+|++| |+.+.+ ...+. +|+|.|+--- |-.+. ..+.....+.+...+.
T Consensus 216 ~w~~i~~l~~~~-----~~PvivK-----Gv~~~eda~~a~~~Gvd~I~VS~HG-Grq~~--~~~a~~~~L~ei~~av~~ 282 (367)
T TIGR02708 216 SPRDIEEIAGYS-----GLPVYVK-----GPQCPEDADRALKAGASGIWVTNHG-GRQLD--GGPAAFDSLQEVAEAVDK 282 (367)
T ss_pred CHHHHHHHHHhc-----CCCEEEe-----CCCCHHHHHHHHHcCcCEEEECCcC-ccCCC--CCCcHHHHHHHHHHHhCC
Confidence 447888887754 4788998 344433 33333 8999887211 22221 1111112222222333
Q ss_pred CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 374 GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 374 GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
.+|+|....+- .-.|+..++..|+|++|+.
T Consensus 283 ~i~vi~dGGIr------------~g~Dv~KaLalGAd~V~ig 312 (367)
T TIGR02708 283 RVPIVFDSGVR------------RGQHVFKALASGADLVALG 312 (367)
T ss_pred CCcEEeeCCcC------------CHHHHHHHHHcCCCEEEEc
Confidence 37888754433 3478999999999999985
No 234
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=66.41 E-value=26 Score=33.21 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEEEeecCCCeeEEeecCCcEEEc---CCCEEEEEE--ec-CCCCceEEecccc---cc
Q 008112 147 ASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPITLT---SGQEFTFTI--QR-GVGSAECVSVNYD---DF 217 (577)
Q Consensus 147 e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~~i~L~---~G~~v~lt~--~~-~~~~~~~i~v~~~---~~ 217 (577)
+....+-..|+++.+++....+--.-+.++.+++.|.. +.|+ .|+..++++ .. .....+.|++..| .+
T Consensus 49 ~~~~~~e~ri~~L~~~L~~a~iv~~~~~~~~~V~~Gs~---V~l~~~~~g~~~~~~lVgp~e~d~~~~~IS~~SPlG~AL 125 (151)
T TIGR01462 49 EEQGFNEGRIAELEDLLANAQVIDDSKLSTDVVGFGST---VTIKDLDTGEEETYTIVGSWEADPKEGKISIDSPLGKAL 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCcccCCCCEEeeCCE---EEEEECCCCCEEEEEEECchhcCccCCeecCCCHHHHHH
Confidence 33444444555555555411111112334458888866 4443 466555443 21 2223346666555 23
Q ss_pred ccccCCCCEEEEe--CCeEEEEEEEE
Q 008112 218 VNDVEVGDMLLVD--GGMMSLLVKSK 241 (577)
Q Consensus 218 ~~~v~~Gd~I~id--DG~i~l~V~~v 241 (577)
+ .-++||.+.+. +|...++|.++
T Consensus 126 l-G~~~Gd~v~v~~p~g~~~~~I~~I 150 (151)
T TIGR01462 126 I-GKKVGDVVEVQTPKGEKEYEILKI 150 (151)
T ss_pred c-CCCCCCEEEEEeCCCcEEEEEEEE
Confidence 2 45899999875 88889998876
No 235
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=66.24 E-value=87 Score=33.98 Aligned_cols=131 Identities=14% Similarity=0.074 Sum_probs=74.4
Q ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEEEEcCCCccCCCCCC
Q 008112 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARGDLGAELPIE 357 (577)
Q Consensus 282 I~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGImIaRGDLg~elg~e 357 (577)
+..|+..|+|+|-++.= --.+.++|..+ |.+..|-+- ..|++++..+ +|.|.+|+---+..=+..
T Consensus 210 vdlAl~~~aDGVHLgq~--dl~~~~aR~ll---g~~~iIG~S------~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~ 278 (347)
T PRK02615 210 VDIALAVDADGVHLGQE--DLPLAVARQLL---GPEKIIGRS------TTNPEEMAKAIAEGADYIGVGPVFPTPTKPGK 278 (347)
T ss_pred HHHHHHcCCCEEEeChh--hcCHHHHHHhc---CCCCEEEEe------cCCHHHHHHHHHcCCCEEEECCCcCCCCCCCC
Confidence 34567789999998742 11245556554 344333333 3345555443 899999864332111110
Q ss_pred cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHH
Q 008112 358 EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLR 437 (577)
Q Consensus 358 ~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~ 437 (577)
. +.-.+.+-..+.....|++--.. + +. .++......|+|+|.+.+.-....-|.++++.+.....+
T Consensus 279 ~-~~Gle~l~~~~~~~~iPv~AiGG-I---------~~---~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~~ 344 (347)
T PRK02615 279 A-PAGLEYLKYAAKEAPIPWFAIGG-I---------DK---SNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQLSR 344 (347)
T ss_pred C-CCCHHHHHHHHHhCCCCEEEECC-C---------CH---HHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHHhc
Confidence 0 11112222334455788764322 1 22 235566678999999987776667899999888776554
No 236
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=66.01 E-value=27 Score=36.66 Aligned_cols=64 Identities=11% Similarity=0.103 Sum_probs=48.7
Q ss_pred ccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEe--ecChhhHhhHHHHHHh-cCEEEEcC
Q 008112 276 EKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA-SDGAMVAR 347 (577)
Q Consensus 276 ekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaK--IEt~~gv~NldeIl~~-sDGImIaR 347 (577)
-++.+++..+++.|+|+|.+.. -+.++++++.+.+. .++++.|- | -.+|+.++++. +|+|-+|.
T Consensus 196 v~tleea~eA~~~gaD~I~LD~-~~~e~l~~~v~~~~---~~i~leAsGGI----t~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 196 VESLDELRQALAAGADIVMLDE-LSLDDMREAVRLTA---GRAKLEASGGI----NESTLRVIAETGVDYISIGA 262 (277)
T ss_pred eCCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHhC---CCCcEEEECCC----CHHHHHHHHHcCCCEEEECh
Confidence 3568888999999999999976 48888888887652 34554442 3 24688999988 99999983
No 237
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=65.68 E-value=42 Score=30.52 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 008112 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (577)
Q Consensus 303 dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~AT 381 (577)
-++.+++.+.+.+....+.+.-+.. .-++++++++-+|.|+.+-.+ ...+..+-+.|+++++|+|.+.
T Consensus 57 Ka~~~~~~l~~~np~~~v~~~~~~~-~~~~~~~~~~~~d~vi~~~d~----------~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 57 KAEAAKERLQEINPDVEVEAIPEKI-DEENIEELLKDYDIVIDCVDS----------LAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEESHC-SHHHHHHHHHTSSEEEEESSS----------HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHhcCceeeeeeeccc-ccccccccccCCCEEEEecCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 4677778888888888877754444 457888999889988876332 4567778889999999998764
No 238
>PRK06801 hypothetical protein; Provisional
Probab=65.61 E-value=1.5e+02 Score=31.32 Aligned_cols=118 Identities=17% Similarity=0.201 Sum_probs=76.0
Q ss_pred CCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCC--C
Q 008112 316 ADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHP--T 392 (577)
Q Consensus 316 ~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~--~ 392 (577)
..+++...+....-++.+++-+.. .+.||+.- -.+|+++-...-+++.+.|+.+|.+|=..-..+-.....+ .
T Consensus 73 ~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~----S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~ 148 (286)
T PRK06801 73 HDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDG----STLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYG 148 (286)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcC----CCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccC
Confidence 467888888887766666666655 78999942 3457777777788999999999998732222221110000 0
Q ss_pred C----ChHhHHHHHHHH-HhccceEEeccccCCCCCHH---HHHHHHHHHHHH
Q 008112 393 P----TRAEVSDIAIAV-REGADAVMLSGETAHGKFPL---KAVKVMHTVSLR 437 (577)
Q Consensus 393 P----trAEv~Dv~nav-~~G~D~imLs~ETa~G~yP~---eaV~~m~~I~~~ 437 (577)
+ ......++..++ ..|+|++-++-=|+.|+|+- .-...+..|...
T Consensus 149 ~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~ 201 (286)
T PRK06801 149 EADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQ 201 (286)
T ss_pred CcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHh
Confidence 0 011224455666 68999999999999999964 235555555443
No 239
>PRK07334 threonine dehydratase; Provisional
Probab=65.43 E-value=1.2e+02 Score=33.32 Aligned_cols=118 Identities=12% Similarity=0.042 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccC
Q 008112 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (577)
Q Consensus 365 ~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~ 444 (577)
-+...|+..|.|+++-. |..+.-..+...-..|++.++.. ...-++++...+++++-. .++.
T Consensus 85 alA~~a~~~G~~~~iv~-----------p~~~~~~k~~~~~~~GA~v~~~~------~~~~~~~~~a~~l~~~~~-~~~~ 146 (403)
T PRK07334 85 GVAYHAQRLGIPATIVM-----------PRFTPTVKVERTRGFGAEVVLHG------ETLDEARAHARELAEEEG-LTFV 146 (403)
T ss_pred HHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHhcC-CEec
Confidence 45668999999998742 32222334566777999998652 345567777776655432 2221
Q ss_pred CCCCCCCCcccCCChhHHHHHHHHHHHhhcCc--eEEEEcCChHHHHHHHh----hCCCCeEEEEcCcH
Q 008112 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT--SIVVFTRTGFMAILLSH----YRPSGTIFAFTNEK 507 (577)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~a--aIiV~T~sG~tA~~is~----~RP~~PIIAvT~~~ 507 (577)
.+ |.+ ....+....-+.++.++++. .+|+..-+|.|+--+++ ++|...|+++-+..
T Consensus 147 ~~-~~~------~~~~~g~~t~~~Ei~~q~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~ 208 (403)
T PRK07334 147 HP-YDD------PAVIAGQGTVALEMLEDAPDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTEL 208 (403)
T ss_pred CC-CCC------HHHHHhHHHHHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 11 111 01223334455667777753 88888888887666554 48999999999964
No 240
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=65.03 E-value=98 Score=33.67 Aligned_cols=174 Identities=14% Similarity=0.081 Sum_probs=93.3
Q ss_pred EEEcCCCCHHHHHHHHHHHHh----cCCCceEEEe---ecC--hh------hHhhHHHHHHh-----cCEEEEcCCCccC
Q 008112 293 YAVSFVKDAQVVHELKNYLKS----CGADIHVIVK---IES--AD------SIPNLHSIITA-----SDGAMVARGDLGA 352 (577)
Q Consensus 293 I~~SfV~sa~dv~~lr~~l~~----~~~~i~IiaK---IEt--~~------gv~NldeIl~~-----sDGImIaRGDLg~ 352 (577)
++.+--+++.-...+.+++.. ...+..|++- +|. .. |++|.+.+++. +|+++.-+|=|..
T Consensus 38 ~~~~~~~~~~~~~rL~Rl~~~g~l~~tGr~vilpvDHG~ehGp~~~f~~n~gl~dp~~~i~~a~~~g~dAv~~~~G~l~~ 117 (348)
T PRK09250 38 VMIYSDRNPGVLRNLQRLLNHGRLAGTGYLSILPVDQGFEHSAGASFAPNPLYFDPENIVKLAIEAGCNAVASTLGVLEA 117 (348)
T ss_pred ccCcccCCHhHHHHHHHHhcccccCCCCCEEEEEcccccccCCccccccCCcccCHHHHHHHHHhcCCCEEEeCHHHHHh
Confidence 445555666666677776643 1223444442 221 11 77777766653 7888876443311
Q ss_pred -CCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCC-CCHHHHHHH
Q 008112 353 -ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHG-KFPLKAVKV 430 (577)
Q Consensus 353 -elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G-~yP~eaV~~ 430 (577)
..+ ....+|.|+--.-=.++.....+...-+.+|-.|+..|+|+|..+- -.| .+=-+.++.
T Consensus 118 ~~~~---------------~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tv--y~Gs~~E~~ml~~ 180 (348)
T PRK09250 118 VARK---------------YAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATI--YFGSEESRRQIEE 180 (348)
T ss_pred cccc---------------ccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEE--ecCCHHHHHHHHH
Confidence 111 1235777775432222212223456666889999999999998752 233 333567777
Q ss_pred HHHHHHHHhccc-cCC-CCCC---CCCcccC-CChhHHHHHHHHHHHhhcCc-eEEE-EcCC
Q 008112 431 MHTVSLRTEATI-TGG-AMPP---NLGQAFK-NHMSEMFAYHATMMSNTLGT-SIVV-FTRT 484 (577)
Q Consensus 431 m~~I~~~aE~~~-~~~-~~~~---~l~~~~~-~~~~~~ia~~a~~~a~~~~a-aIiV-~T~s 484 (577)
+.+++.+++.+- +.- +.|+ .+..... .+..+.+| .|+++|-+++| -|=+ +|.+
T Consensus 181 l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia-~AaRiaaELGADIVKv~yp~~ 241 (348)
T PRK09250 181 ISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTG-QANHLAATIGADIIKQKLPTN 241 (348)
T ss_pred HHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHH-HHHHHHHHHcCCEEEecCCCC
Confidence 888888888651 100 0111 1111010 11245555 57788999999 4444 5543
No 241
>PLN02417 dihydrodipicolinate synthase
Probab=65.03 E-value=43 Score=34.78 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=58.1
Q ss_pred HHHHHHHhcCCCEEEEc------CCCCHHHHHHHH-HHHHhcCCCceEEEeec---ChhhHhhHHHHHHh-cCEEEEcCC
Q 008112 280 DDIKFGVDNKVDFYAVS------FVKDAQVVHELK-NYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVARG 348 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~S------fV~sa~dv~~lr-~~l~~~~~~i~IiaKIE---t~~gv~NldeIl~~-sDGImIaRG 348 (577)
+.+++.++.|+|+|++. +--|.++-.++. ...+..+.+++|++-+= |.++++....--+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 26 SLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred HHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 44678889999999763 222344444443 34455566788999875 45555555555444 899999877
Q ss_pred CccCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 349 DLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
...- .+.+.+...-+.+.++ . |+++.
T Consensus 106 ~y~~-~~~~~i~~~f~~va~~----~-pi~lY 131 (280)
T PLN02417 106 YYGK-TSQEGLIKHFETVLDM----G-PTIIY 131 (280)
T ss_pred ccCC-CCHHHHHHHHHHHHhh----C-CEEEE
Confidence 6532 2334455555555442 3 98864
No 242
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=65.01 E-value=84 Score=30.25 Aligned_cols=125 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCC-------Ccc
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARG-------DLG 351 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRG-------DLg 351 (577)
.+++.+.+.|+|+|-++ ...-+...++..+ +.+..+-+-+-|. +.+.+..+. +|.+++++- +..
T Consensus 64 ~~~~la~~~g~~GvHl~--~~~~~~~~~r~~~---~~~~~ig~s~h~~---~e~~~a~~~g~dyi~~~~v~~t~~k~~~~ 135 (196)
T TIGR00693 64 DRVDLALALGADGVHLG--QDDLPASEARALL---GPDKIIGVSTHNL---EELAEAEAEGADYIGFGPIFPTPTKKDPA 135 (196)
T ss_pred CHHHHHHHcCCCEEecC--cccCCHHHHHHhc---CCCCEEEEeCCCH---HHHHHHhHcCCCEEEECCccCCCCCCCCC
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHH
Q 008112 352 AELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 431 (577)
Q Consensus 352 ~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m 431 (577)
..++++.+..+.+.. .++|++..-.+=. .++..+...|+|++.+.+.-..-+.|.++++.|
T Consensus 136 ~~~g~~~l~~~~~~~------~~~pv~a~GGI~~-------------~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~l 196 (196)
T TIGR00693 136 PPAGVELLREIAATS------IDIPIVAIGGITL-------------ENAAEVLAAGADGVAVVSAIMQAADPKAAAKQL 196 (196)
T ss_pred CCCCHHHHHHHHHhc------CCCCEEEECCcCH-------------HHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHhC
No 243
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=64.89 E-value=87 Score=34.12 Aligned_cols=218 Identities=17% Similarity=0.204 Sum_probs=124.3
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcH
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEV 359 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v 359 (577)
+.|+...+.|+|.|-+. |.+.++.+.++.+.+.. +++++|-|-- +---.+..+-.-+|.+=|.||.+ ...
T Consensus 46 ~Qi~~L~~aGceiVRva-v~~~~~a~al~~I~~~~--~iPlvADIHF-d~~lAl~a~~~G~~~iRINPGNi------g~~ 115 (360)
T PRK00366 46 AQIKRLARAGCEIVRVA-VPDMEAAAALPEIKKQL--PVPLVADIHF-DYRLALAAAEAGADALRINPGNI------GKR 115 (360)
T ss_pred HHHHHHHHcCCCEEEEc-cCCHHHHHhHHHHHHcC--CCCEEEecCC-CHHHHHHHHHhCCCEEEECCCCC------Cch
Confidence 33455567899998776 56777777777765543 6999998732 22223334434489999999998 345
Q ss_pred HHHHHHHHHHHHHcCCceEE--EehhhHhhhc--CCCCChHhH-----HHHHHHHHhccceEEeccccCCCCCHHHHHHH
Q 008112 360 PLLQEEIIRTCRSMGKAVIV--ATNMLESMIV--HPTPTRAEV-----SDIAIAVREGADAVMLSGETAHGKFPLKAVKV 430 (577)
Q Consensus 360 ~~~qk~Ii~~c~~aGKPvi~--ATq~LeSM~~--~~~PtrAEv-----~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~ 430 (577)
.+--+.++++|+++|+|+=+ =..-|+.-.. ...||..-+ ..+.-+-..|++=+.+|--+ ..|..+|+.
T Consensus 116 ~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~Ks---S~v~~~i~a 192 (360)
T PRK00366 116 DERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVKA---SDVQDLIAA 192 (360)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEc---CCHHHHHHH
Confidence 66778999999999999733 2223332222 223443222 22333566899999988443 456666666
Q ss_pred HHHHHHHHhccccCCCCCCCCCcccCCChhHHHHHHHHHHHhhcCceEEE-EcCChHHHHHHHhhCCCCeEEEEcCcHHH
Q 008112 431 MHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTSIVV-FTRTGFMAILLSHYRPSGTIFAFTNEKRI 509 (577)
Q Consensus 431 m~~I~~~aE~~~~~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~aaIiV-~T~sG~tA~~is~~RP~~PIIAvT~~~~t 509 (577)
-+.++++.+.-+ |...- +.+......+..+++.+.. +++-++--|=| +|..---=..+++ ++
T Consensus 193 yrlla~~~dyPL-HlGvT-EAG~~~~G~iKSa~gig~L-L~~GIGDTiRVSLt~~P~~EV~va~--------------~I 255 (360)
T PRK00366 193 YRLLAKRCDYPL-HLGVT-EAGMGFKGTVKSAAGLGAL-LQEGIGDTIRVSLTADPVEEVKVGQ--------------EI 255 (360)
T ss_pred HHHHHhcCCCCc-eeccc-CCCCCCCceehhHHHHHHH-HHhcCCCeEEEeCCCCCHHHHHHHH--------------HH
Confidence 666655443111 11000 0111122334455555443 44445544444 6655432223332 35
Q ss_pred hhhhccc-CCeeEEEeccC
Q 008112 510 QQRLSLY-QGVCPIYMEFS 527 (577)
Q Consensus 510 aR~L~L~-~GV~Pvl~~~~ 527 (577)
.+.|.|. +|+.-+.+|..
T Consensus 256 L~slglr~~g~~IisCPgC 274 (360)
T PRK00366 256 LQSLGLRSRGPEVISCPTC 274 (360)
T ss_pred HHHcCCccCCCeEEECCCC
Confidence 7777775 67777777654
No 244
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=64.84 E-value=26 Score=36.32 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=54.5
Q ss_pred CccCHHHH-HHH-HhcCCCEEEEcCCCC-----HHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcC
Q 008112 275 TEKDWDDI-KFG-VDNKVDFYAVSFVKD-----AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVAR 347 (577)
Q Consensus 275 tekD~~dI-~~a-l~~gvD~I~~SfV~s-----a~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaR 347 (577)
.+.+.++. +.+ ...++|+|++|=-.+ .+++.++|+.+ + ++++ +=|---.+|+.++++.+||++||-
T Consensus 156 ~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~---~--~PVl--vGSGvt~~Ni~~~l~~ADG~IVGS 228 (254)
T PF03437_consen 156 ATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAV---P--VPVL--VGSGVTPENIAEYLSYADGAIVGS 228 (254)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcC---C--CCEE--EecCCCHHHHHHHHHhCCEEEEee
Confidence 34444444 334 356899999998764 55555555544 2 5555 445445679999999999999993
Q ss_pred -----CCccCCCCCCcHHHHHH
Q 008112 348 -----GDLGAELPIEEVPLLQE 364 (577)
Q Consensus 348 -----GDLg~elg~e~v~~~qk 364 (577)
|+..-.+..+++....+
T Consensus 229 ~~K~~G~~~n~VD~~Rv~~fm~ 250 (254)
T PF03437_consen 229 YFKKDGKWENPVDPERVRRFME 250 (254)
T ss_pred eeeeCCEeCCcCCHHHHHHHHH
Confidence 66666666666654443
No 245
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=64.78 E-value=1.1e+02 Score=33.61 Aligned_cols=117 Identities=16% Similarity=0.152 Sum_probs=73.8
Q ss_pred HhcCCCEEEE---cCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh--cCEEEEcCCCccCC-------
Q 008112 286 VDNKVDFYAV---SFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--SDGAMVARGDLGAE------- 353 (577)
Q Consensus 286 l~~gvD~I~~---SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~--sDGImIaRGDLg~e------- 353 (577)
+..|.|.+.- +...+++|+.++.+.+.+...+.+|+.|+=..-..+.+...++. +|+|.|.=++=|..
T Consensus 180 ~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~ 259 (392)
T cd02808 180 IPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFI 259 (392)
T ss_pred CCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCccccc
Confidence 4456665542 34678888888888888776668899998543234455555543 79999975542221
Q ss_pred --CCCCcHHHHHHHHHHHHHHc----CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 354 --LPIEEVPLLQEEIIRTCRSM----GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 354 --lg~e~v~~~qk~Ii~~c~~a----GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
.++. ......++...+++. ..|+|.+..+- --.|++.++..|+|++.+.
T Consensus 260 ~~~g~p-t~~~L~~v~~~~~~~~~~~~i~viasGGI~------------~g~Dv~kalaLGAd~V~ig 314 (392)
T cd02808 260 DHVGLP-TELGLARAHQALVKNGLRDRVSLIASGGLR------------TGADVAKALALGADAVGIG 314 (392)
T ss_pred ccCCcc-HHHHHHHHHHHHHHcCCCCCCeEEEECCCC------------CHHHHHHHHHcCCCeeeec
Confidence 1221 223444555555544 46777655433 2468999999999999874
No 246
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=64.69 E-value=41 Score=32.20 Aligned_cols=130 Identities=21% Similarity=0.238 Sum_probs=76.7
Q ss_pred eecCCCCcccccccccccccccccccccccccCCCCCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCCh---
Q 008112 70 VPVSPEDVPKRDGEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDH--- 146 (577)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~--- 146 (577)
.+++|+.-..|+++|+||..... ++..+++-++ -+||+.
T Consensus 3 ~~lT~~G~~~L~~El~~L~~~~r------------------------------~~~~~~i~~A--------r~~GDlsEN 44 (156)
T TIGR01461 3 PLITPEGYEKLKQELNYLWREER------------------------------PEVTQKVTWA--------ASLGDRSEN 44 (156)
T ss_pred cccCHHHHHHHHHHHHHHHhccc------------------------------HHHHHHHHHH--------HHcCCcchh
Confidence 45788888888888888765443 3445555454 245553
Q ss_pred -------HHHHHHHHHHHHHHHhcCCCeeEEE--eecCCCeeEEeecCCcEEE--cCCCEEEEEEe---cCCCCceEEec
Q 008112 147 -------ASHQKVIDLVKEYNAQSKDNVIAIM--LDTKGPEVRSGDLPQPITL--TSGQEFTFTIQ---RGVGSAECVSV 212 (577)
Q Consensus 147 -------e~~~~~i~~ir~~~~~~~~~~i~I~--~Dl~GpkiR~g~~~~~i~L--~~G~~v~lt~~---~~~~~~~~i~v 212 (577)
+....+-..|+++...+. ..-|. -++++.+++.|.. +.| ..|+..++++- ......+.|+.
T Consensus 45 aeY~aak~~~~~le~rI~~L~~~L~--~A~iid~~~~~~~~V~~Gs~---V~l~d~~~~~~~~~iVgp~ead~~~~~IS~ 119 (156)
T TIGR01461 45 ADYQYGKKRLREIDRRVRFLTKRLE--NLKVVDYSPQQEGKVFFGAW---VELENDDGVTHRFRIVGYDEIDGRKNYISI 119 (156)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh--cCEEeCCCCCCCCEEecCeE---EEEEECCCCEEEEEEEChHHhCcCCCeECC
Confidence 233344445666666664 22332 1234557777765 444 45676666542 12223456765
Q ss_pred ccc--ccccccCCCCEEEEe--CCeEEEEEEEEe
Q 008112 213 NYD--DFVNDVEVGDMLLVD--GGMMSLLVKSKT 242 (577)
Q Consensus 213 ~~~--~~~~~v~~Gd~I~id--DG~i~l~V~~v~ 242 (577)
..| .-+-.-++||.|-+. +|...++|.++.
T Consensus 120 ~SPlG~ALlGk~~GD~v~v~~p~g~~~~eI~~I~ 153 (156)
T TIGR01461 120 DSPLARALLKKEVGDEVVVNTPAGEASWYVNAIE 153 (156)
T ss_pred CCHHHHHHcCCCCCCEEEEEcCCCcEEEEEEEEE
Confidence 544 122245899999886 888999998875
No 247
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=64.68 E-value=1.8e+02 Score=30.61 Aligned_cols=155 Identities=11% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcC------------------------------CCceEEEeecChh
Q 008112 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCG------------------------------ADIHVIVKIESAD 328 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~------------------------------~~i~IiaKIEt~~ 328 (577)
.+.|+.|.+.+. .|..-.|.+.+.++.+.+...+.+ ..++|...+....
T Consensus 7 k~il~~A~~~~y-aV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg~ 85 (284)
T PRK09195 7 KQMLNNAQRGGY-AVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHHE 85 (284)
T ss_pred HHHHHHHHHcCc-eEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_pred hHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCce---EEEehhhHhhhcCCCCC--hHhHHHHH
Q 008112 329 SIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAV---IVATNMLESMIVHPTPT--RAEVSDIA 402 (577)
Q Consensus 329 gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPv---i~ATq~LeSM~~~~~Pt--rAEv~Dv~ 402 (577)
-++.+..-+.. .+-||+. |-.+|+++=...-+++++.|+..|..| +-.-.--|.-+....-. .....++.
T Consensus 86 ~~e~i~~Ai~~GftSVM~D----gS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~ 161 (284)
T PRK09195 86 KFDDIAQKVRSGVRSVMID----GSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAR 161 (284)
T ss_pred CHHHHHHHHHcCCCEEEeC----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHH
Q ss_pred HHHHh-ccceEEeccccCCCCC---HHHHHHHHHHHHHHH
Q 008112 403 IAVRE-GADAVMLSGETAHGKF---PLKAVKVMHTVSLRT 438 (577)
Q Consensus 403 nav~~-G~D~imLs~ETa~G~y---P~eaV~~m~~I~~~a 438 (577)
.++.. |+|++..|-=|+.|.| |---...|.+|.+..
T Consensus 162 ~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~ 201 (284)
T PRK09195 162 EFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWV 201 (284)
T ss_pred HHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHh
No 248
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=64.44 E-value=81 Score=33.90 Aligned_cols=106 Identities=20% Similarity=0.335 Sum_probs=67.5
Q ss_pred CCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEE-Eehh--hHhhhcCC
Q 008112 316 ADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIV-ATNM--LESMIVHP 391 (577)
Q Consensus 316 ~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~-ATq~--LeSM~~~~ 391 (577)
..+++...+....-++.+.+-++. .+-||+. |-.+|+++=...-+++++.|+.+|..|=- -..+ .|--....
T Consensus 84 ~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD----~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~ 159 (321)
T PRK07084 84 CPIPIVLHLDHGDSFELCKDCIDSGFSSVMID----GSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAE 159 (321)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHcCCCEEEee----CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCc
Confidence 357788888887655555444444 6689997 34568888778889999999999988610 0000 01000000
Q ss_pred CCChHhHHHHHHHHH-hccceEEeccccCCCCCHH
Q 008112 392 TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKFPL 425 (577)
Q Consensus 392 ~PtrAEv~Dv~nav~-~G~D~imLs~ETa~G~yP~ 425 (577)
.-......++..++. -|+|++..+--|+.|.|+-
T Consensus 160 ~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~ 194 (321)
T PRK07084 160 HHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKF 194 (321)
T ss_pred ccccCCHHHHHHHHHHhCCCEEeeccccccccccC
Confidence 000112344556665 4999999999999999963
No 249
>PRK15452 putative protease; Provisional
Probab=64.42 E-value=25 Score=39.29 Aligned_cols=86 Identities=13% Similarity=0.165 Sum_probs=56.6
Q ss_pred ceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCC--cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCC
Q 008112 318 IHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIE--EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPT 394 (577)
Q Consensus 318 i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e--~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~Pt 394 (577)
+.+.+...+.++++ .-+.. +|.|.+|-..++.-.... .. .-.++.++.|+++|+.++++++.+ |.
T Consensus 4 peLlapag~~e~l~---aAi~~GADaVY~G~~~~~~R~~~~~f~~-edl~eav~~ah~~g~kvyvt~n~i--------~~ 71 (443)
T PRK15452 4 PELLSPAGTLKNMR---YAFAYGADAVYAGQPRYSLRVRNNEFNH-ENLALGINEAHALGKKFYVVVNIA--------PH 71 (443)
T ss_pred cEEEEECCCHHHHH---HHHHCCCCEEEECCCccchhhhccCCCH-HHHHHHHHHHHHcCCEEEEEecCc--------CC
Confidence 34666665555443 33333 999999977777643211 11 235667899999999999988755 44
Q ss_pred hHhHHHHHH----HHHhccceEEec
Q 008112 395 RAEVSDIAI----AVREGADAVMLS 415 (577)
Q Consensus 395 rAEv~Dv~n----av~~G~D~imLs 415 (577)
..|..++.. ....|+|+++.+
T Consensus 72 e~el~~~~~~l~~l~~~gvDgvIV~ 96 (443)
T PRK15452 72 NAKLKTFIRDLEPVIAMKPDALIMS 96 (443)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 556655444 345699999986
No 250
>PRK12483 threonine dehydratase; Reviewed
Probab=64.38 E-value=1.1e+02 Score=35.04 Aligned_cols=155 Identities=11% Similarity=0.084 Sum_probs=93.4
Q ss_pred ceEEEeecChhhHhhHHH------HHHh-----cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHh
Q 008112 318 IHVIVKIESADSIPNLHS------IITA-----SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLES 386 (577)
Q Consensus 318 i~IiaKIEt~~gv~Nlde------Il~~-----sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeS 386 (577)
..|+.|.|+.+-.-.+.. |... ..||+-+ +-| . .=.-+...|+..|.|+.+.
T Consensus 52 ~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV~a------SaG--N---ha~gvA~aA~~lGi~~~Iv------ 114 (521)
T PRK12483 52 NQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITA------SAG--N---HAQGVALAAARLGVKAVIV------ 114 (521)
T ss_pred CEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEEEE------CCC--H---HHHHHHHHHHHhCCCEEEE------
Confidence 369999999876643322 1111 3354433 222 2 2234667899999998764
Q ss_pred hhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccCCChhHHHHHH
Q 008112 387 MIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYH 466 (577)
Q Consensus 387 M~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~l~~~~~~~~~~~ia~~ 466 (577)
.|..+....+...-..|++.++. |...-++++...+++++-. ..+.. .|++ ......-..-
T Consensus 115 -----mP~~tp~~Kv~~~r~~GAeVil~------g~~~d~a~~~A~~la~e~g-~~~v~-pfdd------~~viaGqgTi 175 (521)
T PRK12483 115 -----MPRTTPQLKVDGVRAHGGEVVLH------GESFPDALAHALKLAEEEG-LTFVP-PFDD------PDVIAGQGTV 175 (521)
T ss_pred -----ECCCCCHHHHHHHHHCCCEEEEE------CCCHHHHHHHHHHHHHhcC-CeeeC-CCCC------hHHHHHHHHH
Confidence 24444445577777899987654 3445678777777655422 21111 1111 1122222334
Q ss_pred HHHHHhhcC--c-eEEEEcCChHHHHHHHh----hCCCCeEEEEcCcHH
Q 008112 467 ATMMSNTLG--T-SIVVFTRTGFMAILLSH----YRPSGTIFAFTNEKR 508 (577)
Q Consensus 467 a~~~a~~~~--a-aIiV~T~sG~tA~~is~----~RP~~PIIAvT~~~~ 508 (577)
+.++.++++ . .||+..-+|.++--+++ ++|.+.||++-+...
T Consensus 176 g~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a 224 (521)
T PRK12483 176 AMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDS 224 (521)
T ss_pred HHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 667777775 4 89999999987766664 489999999998543
No 251
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=64.23 E-value=1.2e+02 Score=30.11 Aligned_cols=121 Identities=14% Similarity=0.138 Sum_probs=61.4
Q ss_pred cCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChh---------------------hHhhHHH
Q 008112 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESAD---------------------SIPNLHS 335 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~---------------------gv~Nlde 335 (577)
.+.++++..++.|+|+|.+.- ..-++...++++.+..+.+. |+.-+.... .++-+..
T Consensus 84 ~~~~d~~~~~~~G~~~vilg~-~~l~~~~~~~~~~~~~~~~~-i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 161 (232)
T TIGR03572 84 RSLEDAKKLLSLGADKVSINT-AALENPDLIEEAARRFGSQC-VVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWARE 161 (232)
T ss_pred CCHHHHHHHHHcCCCEEEECh-hHhcCHHHHHHHHHHcCCce-EEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHH
Confidence 456777777888999987762 22233344445444444332 333333222 1222222
Q ss_pred HHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHH-HHHhccceEE
Q 008112 336 IITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVM 413 (577)
Q Consensus 336 Il~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~n-av~~G~D~im 413 (577)
..+. +|.+.+. |...+-..+.. -.+.+-+.++..++|++.+..+- +. .|+.. .-..|+|+++
T Consensus 162 ~~~~G~d~i~i~--~i~~~g~~~g~--~~~~~~~i~~~~~ipvia~GGi~---------s~---~di~~~l~~~gadgV~ 225 (232)
T TIGR03572 162 AEQLGAGEILLN--SIDRDGTMKGY--DLELIKTVSDAVSIPVIALGGAG---------SL---DDLVEVALEAGASAVA 225 (232)
T ss_pred HHHcCCCEEEEe--CCCccCCcCCC--CHHHHHHHHhhCCCCEEEECCCC---------CH---HHHHHHHHHcCCCEEE
Confidence 2222 7877775 22221111111 02223333445689999876542 34 44555 4457999999
Q ss_pred ec
Q 008112 414 LS 415 (577)
Q Consensus 414 Ls 415 (577)
++
T Consensus 226 vg 227 (232)
T TIGR03572 226 AA 227 (232)
T ss_pred Ee
Confidence 86
No 252
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=64.20 E-value=1.9e+02 Score=30.65 Aligned_cols=118 Identities=18% Similarity=0.311 Sum_probs=73.7
Q ss_pred CCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEE-ehh--hHh-hhcC
Q 008112 316 ADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA-TNM--LES-MIVH 390 (577)
Q Consensus 316 ~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A-Tq~--LeS-M~~~ 390 (577)
..++|...+.....++.+..-+.. .+-||+. |-.+|+++=...-+++++.|+++|..|=-= -++ -|. ....
T Consensus 73 ~~VPValHLDHg~~~e~i~~ai~~GFtSVM~D----gS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~ 148 (286)
T PRK12738 73 YNMPLALHLDHHESLDDIRRKVHAGVRSAMID----GSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVD 148 (286)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCeEeec----CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccc
Confidence 457888888887765555554444 6689997 446788887788899999999999987110 000 010 0000
Q ss_pred CCC-ChHhHHHHHHHHH-hccceEEeccccCCCCCHH---HHHHHHHHHHHH
Q 008112 391 PTP-TRAEVSDIAIAVR-EGADAVMLSGETAHGKFPL---KAVKVMHTVSLR 437 (577)
Q Consensus 391 ~~P-trAEv~Dv~nav~-~G~D~imLs~ETa~G~yP~---eaV~~m~~I~~~ 437 (577)
... ......++..++. -|+|++-.+-=|+.|.|+- --...|.+|...
T Consensus 149 ~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~ 200 (286)
T PRK12738 149 AESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREV 200 (286)
T ss_pred cchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHH
Confidence 000 0112344556665 4999999999999999962 334445555443
No 253
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=64.19 E-value=1.7e+02 Score=29.68 Aligned_cols=131 Identities=15% Similarity=0.224 Sum_probs=72.0
Q ss_pred cCHHHHHHHHhcCCCEEEEcC--CCCHHHHHHHHHHHHhcCCCceEEEeec---------------------ChhhHhhH
Q 008112 277 KDWDDIKFGVDNKVDFYAVSF--VKDAQVVHELKNYLKSCGADIHVIVKIE---------------------SADSIPNL 333 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~Sf--V~sa~dv~~lr~~l~~~~~~i~IiaKIE---------------------t~~gv~Nl 333 (577)
.+.+|++..++.|+|.|++.- .++++.+.++.+.+ +.+ .+++-+. ....++-+
T Consensus 84 ~s~~~~~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~---g~~-~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 159 (253)
T PRK02083 84 RSVEDARRLLRAGADKVSINSAAVANPELISEAADRF---GSQ-CIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWA 159 (253)
T ss_pred CCHHHHHHHHHcCCCEEEEChhHhhCcHHHHHHHHHc---CCC-CEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHH
Confidence 467888888889999987763 45666666665544 322 1222221 11112222
Q ss_pred HHHHHh-cCEEEEcCCC-ccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHH-hccc
Q 008112 334 HSIITA-SDGAMVARGD-LGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVR-EGAD 410 (577)
Q Consensus 334 deIl~~-sDGImIaRGD-Lg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~-~G~D 410 (577)
.++.+. +|.+++-.-+ =|..-++ ++ +.+-+.++..+.|+|.+..+. ...|+..+.. .|+|
T Consensus 160 ~~~~~~g~~~ii~~~i~~~g~~~g~-d~----~~i~~~~~~~~ipvia~GGv~------------s~~d~~~~~~~~G~~ 222 (253)
T PRK02083 160 KEVEELGAGEILLTSMDRDGTKNGY-DL----ELTRAVSDAVNVPVIASGGAG------------NLEHFVEAFTEGGAD 222 (253)
T ss_pred HHHHHcCCCEEEEcCCcCCCCCCCc-CH----HHHHHHHhhCCCCEEEECCCC------------CHHHHHHHHHhCCcc
Confidence 333333 6777663211 1222232 22 223334455689999876644 3355666665 5999
Q ss_pred eEEeccccCCCCCHHHHH
Q 008112 411 AVMLSGETAHGKFPLKAV 428 (577)
Q Consensus 411 ~imLs~ETa~G~yP~eaV 428 (577)
++|.+.==-.|.++.+.+
T Consensus 223 gvivg~al~~~~~~~~~~ 240 (253)
T PRK02083 223 AALAASIFHFGEITIGEL 240 (253)
T ss_pred EEeEhHHHHcCCCCHHHH
Confidence 999863333677776654
No 254
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=63.73 E-value=53 Score=34.02 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 301 AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 301 a~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
.+.++.++++.++. .+.+++-+-+...++-+. +.+|.+.||-+++. +..+++++.+.||||++.
T Consensus 75 ~~gl~~l~~~~~~~--Gl~~~t~~~d~~~~~~l~---~~~d~lkI~s~~~~-----------n~~LL~~~a~~gkPVilk 138 (260)
T TIGR01361 75 EEGLKLLRRAADEH--GLPVVTEVMDPRDVEIVA---EYADILQIGARNMQ-----------NFELLKEVGKQGKPVLLK 138 (260)
T ss_pred HHHHHHHHHHHHHh--CCCEEEeeCChhhHHHHH---hhCCEEEECccccc-----------CHHHHHHHhcCCCcEEEe
Confidence 56788888887654 567888887777666555 45799999977652 234788888999999998
Q ss_pred ehhhHhhhcCCCCChHhHHHHHHHHH-hccceEEec
Q 008112 381 TNMLESMIVHPTPTRAEVSDIAIAVR-EGADAVMLS 415 (577)
Q Consensus 381 Tq~LeSM~~~~~PtrAEv~Dv~nav~-~G~D~imLs 415 (577)
|.|. +|-.|+...+..+. .|.+-++|.
T Consensus 139 ~G~~--------~t~~e~~~Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 139 RGMG--------NTIEEWLYAAEYILSSGNGNVILC 166 (260)
T ss_pred CCCC--------CCHHHHHHHHHHHHHcCCCcEEEE
Confidence 7765 46788888888775 577666664
No 255
>PLN02970 serine racemase
Probab=63.66 E-value=1.3e+02 Score=31.96 Aligned_cols=118 Identities=13% Similarity=0.027 Sum_probs=71.9
Q ss_pred HHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccC
Q 008112 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (577)
Q Consensus 365 ~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~ 444 (577)
-+...|+..|.|+.+.. |..+.-..+.+.-..|++.+...+ ...++.++..+++++ ...++.
T Consensus 89 alA~~a~~~G~~~~ivv-----------p~~~~~~k~~~~~~~GA~Vi~~~~------~~~~~~~~a~~la~~-~g~~~~ 150 (328)
T PLN02970 89 ALALAAKLRGIPAYIVV-----------PKNAPACKVDAVIRYGGIITWCEP------TVESREAVAARVQQE-TGAVLI 150 (328)
T ss_pred HHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHhcCCEEEEeCC------CHHHHHHHHHHHHHh-cCCEEe
Confidence 45568999999998743 222223335566778999887642 234566666666543 222221
Q ss_pred CCCCCCCCcccCCChhHHHHHHHHHHHhhcC-c-eEEEEcCChHHHHHHHhh----CCCCeEEEEcCcH
Q 008112 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLG-T-SIVVFTRTGFMAILLSHY----RPSGTIFAFTNEK 507 (577)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~-a-aIiV~T~sG~tA~~is~~----RP~~PIIAvT~~~ 507 (577)
. .|.+. ...+....-+.++.++++ . .||+..-+|.+..-++++ .|...||++-+..
T Consensus 151 ~-~~~n~------~~~~g~~t~g~Ei~~ql~~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~ 212 (328)
T PLN02970 151 H-PYNDG------RVISGQGTIALEFLEQVPELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKG 212 (328)
T ss_pred C-CCCCc------chhhehHHHHHHHHHhccCCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECC
Confidence 1 12111 112222233556667765 4 889999999988777766 8999999998854
No 256
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=63.40 E-value=79 Score=32.95 Aligned_cols=97 Identities=12% Similarity=0.143 Sum_probs=58.7
Q ss_pred HHHHHHHh-cCCCEEEEc------CCCCHHHHHHHH-HHHHhcCCCceEEEeec---ChhhHhhHHHHHHh-cCEEEEcC
Q 008112 280 DDIKFGVD-NKVDFYAVS------FVKDAQVVHELK-NYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVAR 347 (577)
Q Consensus 280 ~dI~~al~-~gvD~I~~S------fV~sa~dv~~lr-~~l~~~~~~i~IiaKIE---t~~gv~NldeIl~~-sDGImIaR 347 (577)
+.+++.++ .|+++|++. +.=|.++-.++. ..++..+.++.||+.+- |.++++.....-+. +|++|+-+
T Consensus 28 ~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 28 RLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVT 107 (293)
T ss_pred HHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 45678889 999998764 223444444443 34455566789999984 45555555555544 89999986
Q ss_pred CCccCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 348 GDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 348 GDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
..+-- ...+.+ .+..-..|.+.+.|+++.
T Consensus 108 P~y~~-~~~~~l---~~~f~~va~a~~lPv~iY 136 (293)
T PRK04147 108 PFYYP-FSFEEI---CDYYREIIDSADNPMIVY 136 (293)
T ss_pred CcCCC-CCHHHH---HHHHHHHHHhCCCCEEEE
Confidence 55411 111233 333334455668899875
No 257
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=63.22 E-value=1.4e+02 Score=32.06 Aligned_cols=149 Identities=20% Similarity=0.279 Sum_probs=90.2
Q ss_pred CccCHHHHHHHHh-cC-CCEEEE----cCCC-------CHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh--
Q 008112 275 TEKDWDDIKFGVD-NK-VDFYAV----SFVK-------DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-- 339 (577)
Q Consensus 275 tekD~~dI~~al~-~g-vD~I~~----SfV~-------sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-- 339 (577)
++.++.|....++ .+ +|++-+ |.+. +++.+.++.+.++.. .+.++++||= + -+.++++|++.
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~-~~~Pv~vKl~-P-~~~di~~iA~~~~ 183 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAA-TKVPVFVKLA-P-NITDIDEIAKAAE 183 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhc-ccCceEEEeC-C-CHHHHHHHHHHHH
Confidence 4667777766554 34 687643 2222 555555555555443 3589999994 4 56677777765
Q ss_pred ---cCEEEEc-------CCCccCCC--------CCC---cHHHHHHHHHHHHHHcC--CceEEEehhhHhhhcCCCCChH
Q 008112 340 ---SDGAMVA-------RGDLGAEL--------PIE---EVPLLQEEIIRTCRSMG--KAVIVATNMLESMIVHPTPTRA 396 (577)
Q Consensus 340 ---sDGImIa-------RGDLg~el--------g~e---~v~~~qk~Ii~~c~~aG--KPvi~ATq~LeSM~~~~~PtrA 396 (577)
.||+..- +.|+.... |+. -.+..-+.+-+.++..+ .|+|- +.-.+
T Consensus 184 ~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIG-vGGI~----------- 251 (310)
T COG0167 184 EAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIG-VGGIE----------- 251 (310)
T ss_pred HcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEE-ecCcC-----------
Confidence 6888754 13444411 111 34555566666777777 88765 33332
Q ss_pred hHHHHHHHHHhccceEEeccccCCCCC-HHHHHHHHHHHHHHHhc
Q 008112 397 EVSDIAIAVREGADAVMLSGETAHGKF-PLKAVKVMHTVSLRTEA 440 (577)
Q Consensus 397 Ev~Dv~nav~~G~D~imLs~ETa~G~y-P~eaV~~m~~I~~~aE~ 440 (577)
-..|++..++.||+++.+- |+.=.+ |--+=++...+.+..|+
T Consensus 252 s~~DA~E~i~aGA~~vQv~--Tal~~~Gp~i~~~I~~~l~~~l~~ 294 (310)
T COG0167 252 TGEDALEFILAGASAVQVG--TALIYKGPGIVKEIIKGLARWLEE 294 (310)
T ss_pred cHHHHHHHHHcCCchheee--eeeeeeCchHHHHHHHHHHHHHHH
Confidence 3578999999999999985 566566 54444444444444443
No 258
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=63.14 E-value=31 Score=41.88 Aligned_cols=134 Identities=21% Similarity=0.237 Sum_probs=84.9
Q ss_pred CCCceeecCCCCcccccccccccccccccccccccccCCCCCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCC
Q 008112 65 VEPEVVPVSPEDVPKRDGEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHG 144 (577)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg 144 (577)
...+.+++++|.-+.|.++|+||..... ++..+++-+| -+||
T Consensus 745 ~~~~~~~lT~eg~~kL~~EL~~L~~v~R------------------------------pei~~~I~~A--------r~~G 786 (906)
T PRK14720 745 VPEIGFLVTRRALNKKKKELEHLKDVEM------------------------------PENSKDIGEA--------QELG 786 (906)
T ss_pred CCCCCceeCHHHHHHHHHHHHHHHHhhH------------------------------HHHHHHHHHH--------HhCC
Confidence 3344569999999999999999987655 3455555544 4566
Q ss_pred Ch----------HHHHHHHHHHHHHHHhcCCCeeEEEee---cCCCeeEEeecCCcEEE---cCCCEEEEEE--e-cCCC
Q 008112 145 DH----------ASHQKVIDLVKEYNAQSKDNVIAIMLD---TKGPEVRSGDLPQPITL---TSGQEFTFTI--Q-RGVG 205 (577)
Q Consensus 145 ~~----------e~~~~~i~~ir~~~~~~~~~~i~I~~D---l~GpkiR~g~~~~~i~L---~~G~~v~lt~--~-~~~~ 205 (577)
+. ++...+-..|++..+.+. ..-| +| .+..+|+.|.. |.| ..|++.++++ . ....
T Consensus 787 DLsENaEY~aAKe~q~~le~RI~eLe~~L~--~A~I-Id~~~~~~d~V~~GS~---Vtl~d~d~~ee~ty~IVGp~EaD~ 860 (906)
T PRK14720 787 DLRENAEYKAAKEKQQQLQAALKRLEAEID--SAKI-LDLTDVKTSKVGFGTK---VKLKNEDTGEEESYSILGPWESDP 860 (906)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHHh--cCEE-eCcccCCCCEEEeCCE---EEEEECCCCCEEEEEEEChhhcCc
Confidence 64 334455556666666665 2222 33 34457887765 444 3577555443 2 2223
Q ss_pred CceEEecccc---ccccccCCCCEEEEe--CCeEEEEEEEEeC
Q 008112 206 SAECVSVNYD---DFVNDVEVGDMLLVD--GGMMSLLVKSKTE 243 (577)
Q Consensus 206 ~~~~i~v~~~---~~~~~v~~Gd~I~id--DG~i~l~V~~v~~ 243 (577)
..+.|++..| .++ .-++||.|-+. +|...++|.++.+
T Consensus 861 ~~g~IS~~SPLGkALL-GkkvGD~V~v~~P~g~~~yeIl~I~~ 902 (906)
T PRK14720 861 EEGIISYQSPLGKSLL-GKKEGDSLEFVINDTETRYTVLKIER 902 (906)
T ss_pred CCCeECCCCHHHHHHc-CCCCCCEEEEEECCceEEEEEEEEEe
Confidence 4456777655 233 45899999875 8999999999865
No 259
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=62.91 E-value=70 Score=33.70 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=42.5
Q ss_pred HHHHHhcCCCEEEE------------------cCCCCHHHHHHHHHHHHh-cCCCceEEEeecCh-------hhHhhHHH
Q 008112 282 IKFGVDNKVDFYAV------------------SFVKDAQVVHELKNYLKS-CGADIHVIVKIESA-------DSIPNLHS 335 (577)
Q Consensus 282 I~~al~~gvD~I~~------------------SfV~sa~dv~~lr~~l~~-~~~~i~IiaKIEt~-------~gv~Nlde 335 (577)
++...+.|+.+|.+ ..+...+.+..++..... .+.++.|+|..|.. ++++....
T Consensus 98 V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~a 177 (285)
T TIGR02320 98 VRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEA 177 (285)
T ss_pred HHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHH
Confidence 45556788888888 334444445555554443 36679999997765 45555555
Q ss_pred HHHh-cCEEEEc
Q 008112 336 IITA-SDGAMVA 346 (577)
Q Consensus 336 Il~~-sDGImIa 346 (577)
-.++ +|+||+-
T Consensus 178 y~eAGAD~ifv~ 189 (285)
T TIGR02320 178 YAEAGADGIMIH 189 (285)
T ss_pred HHHcCCCEEEec
Confidence 5555 9999984
No 260
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=62.87 E-value=1.7e+02 Score=31.08 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=30.5
Q ss_pred HHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHH
Q 008112 399 SDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLR 437 (577)
Q Consensus 399 ~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~ 437 (577)
.|+..++..|+|++++.+.-.....|.+..+.+......
T Consensus 212 edAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 212 ADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred HHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 347778889999999987666667899988887776544
No 261
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=62.74 E-value=19 Score=37.91 Aligned_cols=64 Identities=11% Similarity=0.046 Sum_probs=50.0
Q ss_pred CHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhH--hhHHHHHHh-cCEEEEc
Q 008112 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVA 346 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-sDGImIa 346 (577)
..++.+.+++.|+|.|.+=. -++++++++.+.+.+.+.++ ++|---|| +|+.++++. +|.|.++
T Consensus 198 tleqa~ea~~agaDiI~LDn-~~~e~l~~av~~~~~~~~~~----~leaSGGI~~~ni~~yA~tGvD~Is~g 264 (284)
T PRK06096 198 TPKEAIAALRAQPDVLQLDK-FSPQQATEIAQIAPSLAPHC----TLSLAGGINLNTLKNYADCGIRLFITS 264 (284)
T ss_pred CHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHhhccCCCe----EEEEECCCCHHHHHHHHhcCCCEEEEC
Confidence 67888889999999999976 48999999999886544443 45555554 488888887 9999887
No 262
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=62.66 E-value=77 Score=34.69 Aligned_cols=138 Identities=19% Similarity=0.189 Sum_probs=73.2
Q ss_pred ceeeeCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEc---CCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHH
Q 008112 260 RHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVS---FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSI 336 (577)
Q Consensus 260 Kginlp~~~~~lp~ltekD~~dI~~al~~gvD~I~~S---fV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeI 336 (577)
.|=.||+..++ .++..+ +.+..|.|.+.-| -+.|.+|+.++.+.|++.+...+|-.|+=.-..++.+...
T Consensus 150 ~GG~Lp~~KV~------~~ia~~-R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~ 222 (368)
T PF01645_consen 150 EGGHLPGEKVT------EEIARI-RGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAG 222 (368)
T ss_dssp T--EE-GGG--------HHHHHH-HTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHH
T ss_pred Ccceechhhch------HHHHHH-hCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHh
Confidence 34556665543 122222 3456677877533 4788899999999999988889999999776666655553
Q ss_pred HH-h-cCEEEEcCCCccCCCCCC--------cHHHHHHHHHHHHHHcC---CceEEEehhhHhhhcCCCCChHhHHHHHH
Q 008112 337 IT-A-SDGAMVARGDLGAELPIE--------EVPLLQEEIIRTCRSMG---KAVIVATNMLESMIVHPTPTRAEVSDIAI 403 (577)
Q Consensus 337 l~-~-sDGImIaRGDLg~elg~e--------~v~~~qk~Ii~~c~~aG---KPvi~ATq~LeSM~~~~~PtrAEv~Dv~n 403 (577)
+. . +|.|.|.-++=|.-.... .+.....++.+...+.| +..++++.-| .--.|++.
T Consensus 223 ~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl-----------~t~~dv~k 291 (368)
T PF01645_consen 223 AAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGL-----------RTGDDVAK 291 (368)
T ss_dssp HHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS-------------SHHHHHH
T ss_pred hhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCc-----------cCHHHHHH
Confidence 32 2 899999866544322111 12233344444444444 4445555444 12468999
Q ss_pred HHHhccceEEec
Q 008112 404 AVREGADAVMLS 415 (577)
Q Consensus 404 av~~G~D~imLs 415 (577)
++..|+|++.+.
T Consensus 292 alaLGAD~v~ig 303 (368)
T PF01645_consen 292 ALALGADAVYIG 303 (368)
T ss_dssp HHHCT-SEEE-S
T ss_pred HHhcCCCeeEec
Confidence 999999999874
No 263
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=62.58 E-value=23 Score=37.19 Aligned_cols=64 Identities=19% Similarity=0.144 Sum_probs=49.7
Q ss_pred CHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhH--hhHHHHHHh-cCEEEEc
Q 008112 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVA 346 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-sDGImIa 346 (577)
..++.+.+++.|+|.|.+=. -+++++.+..+.+++.+.++ +||=.-|| +|+.++++. +|.|.+|
T Consensus 197 tleea~ea~~~GaDiI~lDn-~~~e~l~~~v~~l~~~~~~~----~leasGGI~~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 197 TIEQALTVLQASPDILQLDK-FTPQQLHHLHERLKFFDHIP----TLAAAGGINPENIADYIEAGIDLFITS 263 (277)
T ss_pred CHHHHHHHHHcCcCEEEECC-CCHHHHHHHHHHHhccCCCE----EEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 67788889999999999987 58999999999886545554 35544444 488888877 9999887
No 264
>PRK06815 hypothetical protein; Provisional
Probab=62.49 E-value=1e+02 Score=32.48 Aligned_cols=118 Identities=12% Similarity=0.092 Sum_probs=71.7
Q ss_pred HHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccC
Q 008112 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (577)
Q Consensus 365 ~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~ 444 (577)
-+...|+..|.|+.+-. |..+.-..+...-..|++.+...++ ..++.+...+++.+-. .++.
T Consensus 82 alA~~a~~~G~~~~i~~-----------p~~~~~~k~~~~~~~GA~V~~~~~~------~~~~~~~a~~~~~~~~-~~~~ 143 (317)
T PRK06815 82 GVALAAKLAGIPVTVYA-----------PEQASAIKLDAIRALGAEVRLYGGD------ALNAELAARRAAEQQG-KVYI 143 (317)
T ss_pred HHHHHHHHhCCCEEEEE-----------CCCCCHHHHHHHHHCCCEEEEECCC------HHHHHHHHHHHHHhcC-CEEe
Confidence 36678999999998742 2222233455667789999888643 3466666555544322 1111
Q ss_pred CCCCCCCCcccCCChhHHHHHHHHHHHhhcCc--eEEEEcCChHHHHHH----HhhCCCCeEEEEcCcH
Q 008112 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT--SIVVFTRTGFMAILL----SHYRPSGTIFAFTNEK 507 (577)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~a--aIiV~T~sG~tA~~i----s~~RP~~PIIAvT~~~ 507 (577)
. .+.+ ....+....-+.++.++++. .||+..-+|.+.--+ ..+.|...|+++.+..
T Consensus 144 ~-~~~~------~~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~ 205 (317)
T PRK06815 144 S-PYND------PQVIAGQGTIGMELVEQQPDLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPAN 205 (317)
T ss_pred c-CCCC------hhhhcchhHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 1 1111 01122333345677777753 889988888866444 4556999999999864
No 265
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=62.34 E-value=57 Score=34.00 Aligned_cols=95 Identities=15% Similarity=0.179 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCCEEEEc------CCCCHHHHHHHHH-HHHhcCCCceEEEeecChhhHhhHHHHHHh-----cCEEEEcC
Q 008112 280 DDIKFGVDNKVDFYAVS------FVKDAQVVHELKN-YLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGAMVAR 347 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~S------fV~sa~dv~~lr~-~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-----sDGImIaR 347 (577)
+.+++.++.|+|+|++. +--|.++-.++.+ .++..+.+++||+-+- . +.++.-+.++. +|++|+.+
T Consensus 25 ~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 25 AHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAYAQAAEKAGADGILLLP 102 (289)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHHHHHHHHhCCCEEEECC
Confidence 35678889999998764 3345555555544 4455566788999884 2 44433333332 89999976
Q ss_pred CCccCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 348 GDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 348 GDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
--+.- .+.+.+...-+.+ |.+.+.|+++.
T Consensus 103 P~y~~-~~~~~i~~~f~~v---~~~~~~pi~lY 131 (289)
T cd00951 103 PYLTE-APQEGLYAHVEAV---CKSTDLGVIVY 131 (289)
T ss_pred CCCCC-CCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 55421 2223444444444 44568999876
No 266
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=62.27 E-value=15 Score=39.62 Aligned_cols=48 Identities=13% Similarity=0.246 Sum_probs=41.9
Q ss_pred EEEEecCCCCCCHHHHHHHHHh--CCcEEEEeccCCChHHHHHHHHHHHH
Q 008112 111 KIVCTIGPSTNTREMIWKLAEA--GMNVARLNMSHGDHASHQKVIDLVKE 158 (577)
Q Consensus 111 KIi~TiGPs~~~~e~l~~li~~--Gm~v~RiN~sHg~~e~~~~~i~~ir~ 158 (577)
.+..++|-..++.|.+++|+++ |+|+.=|+.+||..+...++|+.||+
T Consensus 98 ~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~ 147 (346)
T PRK05096 98 HVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKARE 147 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHH
Confidence 4555888888999999999995 99999999999999988888888875
No 267
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=62.27 E-value=13 Score=41.09 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=42.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHH
Q 008112 109 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (577)
Q Consensus 109 ~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 158 (577)
+-..-+.+|+.-.+.+.++.|+++|+|+.=|..+||..+...++++.+|+
T Consensus 141 ~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~ 190 (404)
T PRK06843 141 KLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKT 190 (404)
T ss_pred CeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHh
Confidence 34567778887667899999999999999999999988877777777775
No 268
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=62.13 E-value=1.4e+02 Score=31.70 Aligned_cols=126 Identities=17% Similarity=0.245 Sum_probs=66.7
Q ss_pred CCCccCHHHH--------HHHHhcCCCEEEEcC---------------CCC--------------HHHHHHHHHHHHhcC
Q 008112 273 SITEKDWDDI--------KFGVDNKVDFYAVSF---------------VKD--------------AQVVHELKNYLKSCG 315 (577)
Q Consensus 273 ~ltekD~~dI--------~~al~~gvD~I~~Sf---------------V~s--------------a~dv~~lr~~l~~~~ 315 (577)
.+|+.|++.+ +.+.+.|+|+|=+.. .|+ .+-++.+|+. .|
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~---vG 219 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAV---WP 219 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHH---cC
Confidence 6788887776 466789999996542 332 1333333333 36
Q ss_pred CCceEEEeecCh----hh--HhhHHHHHH----h-cCEEEEcCCCccCCC--CCCcHHHHHHHHH-HHHHHcCCceEEEe
Q 008112 316 ADIHVIVKIESA----DS--IPNLHSIIT----A-SDGAMVARGDLGAEL--PIEEVPLLQEEII-RTCRSMGKAVIVAT 381 (577)
Q Consensus 316 ~~i~IiaKIEt~----~g--v~NldeIl~----~-sDGImIaRGDLg~el--g~e~v~~~qk~Ii-~~c~~aGKPvi~AT 381 (577)
.+..|..||=-. .| .+..-++++ . .|.|=|..|...... +... ..+.... ...+...+|++..-
T Consensus 220 ~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~--~~~~~~~~~ir~~~~iPVi~~G 297 (336)
T cd02932 220 EDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGP--GYQVPFAERIRQEAGIPVIAVG 297 (336)
T ss_pred CCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCc--cccHHHHHHHHhhCCCCEEEeC
Confidence 788888886411 11 222222222 2 677777666443221 2111 1111122 22334589988643
Q ss_pred hhhHhhhcCCCCChHhHHHHHHHHHhc-cceEEec
Q 008112 382 NMLESMIVHPTPTRAEVSDIAIAVREG-ADAVMLS 415 (577)
Q Consensus 382 q~LeSM~~~~~PtrAEv~Dv~nav~~G-~D~imLs 415 (577)
.+ -|.+ ++..++..| +|+|++.
T Consensus 298 ~i---------~t~~---~a~~~l~~g~aD~V~~g 320 (336)
T cd02932 298 LI---------TDPE---QAEAILESGRADLVALG 320 (336)
T ss_pred CC---------CCHH---HHHHHHHcCCCCeehhh
Confidence 32 2343 355677777 9999974
No 269
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=62.03 E-value=24 Score=35.17 Aligned_cols=60 Identities=20% Similarity=0.357 Sum_probs=43.5
Q ss_pred EEcCCCEEEEEEec--CCC---CceEEeccccccc--cccCCCCEEEEe--CCeEEEEEEEEeCCeEEE
Q 008112 189 TLTSGQEFTFTIQR--GVG---SAECVSVNYDDFV--NDVEVGDMLLVD--GGMMSLLVKSKTEDSVKC 248 (577)
Q Consensus 189 ~L~~G~~v~lt~~~--~~~---~~~~i~v~~~~~~--~~v~~Gd~I~id--DG~i~l~V~~v~~~~v~~ 248 (577)
-.+.|+++++++.. ..+ ......++-..|. ..+++|++++.+ +|.+.++|++++++.|+.
T Consensus 51 G~~~Gd~~~v~l~peeAyGe~d~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~~d~V~v 119 (196)
T PRK10737 51 GHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVV 119 (196)
T ss_pred CCCCCCEEEEEEChHHhcCCCChHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEEcCCEEEE
Confidence 46899999999863 222 2234456656663 358999999874 888999999999988654
No 270
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=61.82 E-value=29 Score=37.57 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=57.5
Q ss_pred CHHHHHHHHhcCCCEEEEcCC------CCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEEEEcC
Q 008112 278 DWDDIKFGVDNKVDFYAVSFV------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVAR 347 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~SfV------~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGImIaR 347 (577)
..+|.+.+.+.|+|+|.+|.- ..+..+..+.+.....+.++.||+- -||.+-.+|+++ +|++|+||
T Consensus 231 ~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~d----GGIr~g~Di~kaLalGA~~V~iGr 306 (351)
T cd04737 231 SPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFD----SGVRRGEHVFKALASGADAVAVGR 306 (351)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEE----CCCCCHHHHHHHHHcCCCEEEECH
Confidence 447888999999999999732 2223344444443334456777773 467777777665 99999999
Q ss_pred CCc-cCC-CCCC----cHHHHHHHHHHHHHHcCCc
Q 008112 348 GDL-GAE-LPIE----EVPLLQEEIIRTCRSMGKA 376 (577)
Q Consensus 348 GDL-g~e-lg~e----~v~~~qk~Ii~~c~~aGKP 376 (577)
.=| ++. -|.+ .+..+++++-..-...|..
T Consensus 307 ~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~ 341 (351)
T cd04737 307 PVLYGLALGGAQGVASVLEHLNKELKIVMQLAGTR 341 (351)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 655 111 1222 2334445555555555644
No 271
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=61.80 E-value=78 Score=32.45 Aligned_cols=98 Identities=15% Similarity=0.138 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCCEEEEc------CCCCHHHHHHHHH-HHHhcCCCceEEEeecCh---hhHhhHHHHHHh-cCEEEEcC
Q 008112 279 WDDIKFGVDNKVDFYAVS------FVKDAQVVHELKN-YLKSCGADIHVIVKIESA---DSIPNLHSIITA-SDGAMVAR 347 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~S------fV~sa~dv~~lr~-~l~~~~~~i~IiaKIEt~---~gv~NldeIl~~-sDGImIaR 347 (577)
.+.+++.++.|+|+|.+. +--|.++=.++.+ ..+..+.++.|++.+=+. ++++-....-+. +|++|+.+
T Consensus 21 ~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVP 100 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECC
Confidence 345678889999998754 2233444444443 334445678999987442 233333333333 89999986
Q ss_pred CCccCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 348 GDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 348 GDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
-.+.. .+.+.+...-+.|++ +.+.|+++.
T Consensus 101 P~y~~-~~~~~~~~~~~~ia~---~~~~pi~iY 129 (281)
T cd00408 101 PYYNK-PSQEGIVAHFKAVAD---ASDLPVILY 129 (281)
T ss_pred CcCCC-CCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 65533 333345445455544 468999874
No 272
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=61.78 E-value=52 Score=32.45 Aligned_cols=148 Identities=22% Similarity=0.239 Sum_probs=80.9
Q ss_pred CCCCccCHHHH-HHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhH-------HHHHHh-cCE
Q 008112 272 PSITEKDWDDI-KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNL-------HSIITA-SDG 342 (577)
Q Consensus 272 p~ltekD~~dI-~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~Nl-------deIl~~-sDG 342 (577)
|..|+.|.+.+ +.+.+.|+|.|+++ +..+..+++.+.. ..+.+-+=+=.+.|-... ++-++. +|.
T Consensus 12 p~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~~~~~~l~~--~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAde 85 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVN----PCFVPLAREALKG--SGVKVCTVIGFPLGATTTEVKVAEAREAIADGADE 85 (203)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc----HHHHHHHHHHcCC--CCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 66677775554 56777899999987 6777777777643 345555555545543333 333333 665
Q ss_pred EEEcCCCccCCC-C-CCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHH-HHHhccceEEec-ccc
Q 008112 343 AMVARGDLGAEL-P-IEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLS-GET 418 (577)
Q Consensus 343 ImIaRGDLg~el-g-~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~n-av~~G~D~imLs-~ET 418 (577)
|-+- -++|.-. + ++.+..-.+++.+.|. |+|+.+ ++|. +.-+..++...+. ++..|+|.|=-| |=+
T Consensus 86 vdvv-~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkv---I~e~----~~l~~~~i~~a~ria~e~GaD~IKTsTG~~ 155 (203)
T cd00959 86 IDMV-INIGALKSGDYEAVYEEIAAVVEACG--GAPLKV---ILET----GLLTDEEIIKACEIAIEAGADFIKTSTGFG 155 (203)
T ss_pred EEEe-ecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEE---EEec----CCCCHHHHHHHHHHHHHhCCCEEEcCCCCC
Confidence 5432 0111111 1 1123333344445553 788744 2222 1114566666665 788899998764 222
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 008112 419 AHGKFPLKAVKVMHTVSL 436 (577)
Q Consensus 419 a~G~yP~eaV~~m~~I~~ 436 (577)
..|- -.+.|+.|++++.
T Consensus 156 ~~~a-t~~~v~~~~~~~~ 172 (203)
T cd00959 156 PGGA-TVEDVKLMKEAVG 172 (203)
T ss_pred CCCC-CHHHHHHHHHHhC
Confidence 2222 2377788887776
No 273
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=61.18 E-value=14 Score=39.69 Aligned_cols=44 Identities=20% Similarity=0.459 Sum_probs=36.9
Q ss_pred ecCCCCCCHHHHHHHHHhCC--cEEEEeccCCChHHHHHHHHHHHH
Q 008112 115 TIGPSTNTREMIWKLAEAGM--NVARLNMSHGDHASHQKVIDLVKE 158 (577)
Q Consensus 115 TiGPs~~~~e~l~~li~~Gm--~v~RiN~sHg~~e~~~~~i~~ir~ 158 (577)
.+|.+.++.+.+.+|+++|+ |+.=|+.+||..+..+++|+.||+
T Consensus 91 ~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~ 136 (326)
T PRK05458 91 SVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKK 136 (326)
T ss_pred EecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHh
Confidence 44555567789999999966 999999999999988888888885
No 274
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=60.03 E-value=18 Score=39.01 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=42.5
Q ss_pred EEEEecCCCCCCHHHHHHHHHhC--CcEEEEeccCCChHHHHHHHHHHHH
Q 008112 111 KIVCTIGPSTNTREMIWKLAEAG--MNVARLNMSHGDHASHQKVIDLVKE 158 (577)
Q Consensus 111 KIi~TiGPs~~~~e~l~~li~~G--m~v~RiN~sHg~~e~~~~~i~~ir~ 158 (577)
.+...+|-...+.|.++.|+++| .|+.=|+.+||..+...++|+.||+
T Consensus 97 ~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~ 146 (343)
T TIGR01305 97 NVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVRE 146 (343)
T ss_pred eEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHh
Confidence 35558899999999999999996 9999999999999988888888885
No 275
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=59.85 E-value=12 Score=42.24 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=37.8
Q ss_pred EecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHH
Q 008112 114 CTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (577)
Q Consensus 114 ~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 158 (577)
+.+|..-.+.+.++.|+++|+++.-++.+||......+.|+.||+
T Consensus 234 aavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~ 278 (495)
T PTZ00314 234 AAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKS 278 (495)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHh
Confidence 477876677899999999999999999999988776667776664
No 276
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=59.61 E-value=58 Score=33.78 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=56.8
Q ss_pred HHHHHHHhcCCCEEEEc-------CCCCHHHHHHHHHHHHhcCCCceEEEeec---ChhhHhhHHHHHHh-cCEEEEcCC
Q 008112 280 DDIKFGVDNKVDFYAVS-------FVKDAQVVHELKNYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVARG 348 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~S-------fV~sa~dv~~lr~~l~~~~~~i~IiaKIE---t~~gv~NldeIl~~-sDGImIaRG 348 (577)
+.+++.++.|+++|++. +....|-.+-++...+..+.++.|++-+= +.++++.+...-+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP 105 (292)
T PRK03170 26 KLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTP 105 (292)
T ss_pred HHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCC
Confidence 44678889999999753 22223333333334444456688888874 34444444444444 899999766
Q ss_pred CccCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 349 DLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
.+.. .+.+.+...-+.|.+ +.+.|+++.
T Consensus 106 ~~~~-~~~~~i~~~~~~ia~---~~~~pv~lY 133 (292)
T PRK03170 106 YYNK-PTQEGLYQHFKAIAE---ATDLPIILY 133 (292)
T ss_pred cCCC-CCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 5432 222345544555544 457999875
No 277
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=59.52 E-value=1.5e+02 Score=32.06 Aligned_cols=120 Identities=10% Similarity=0.108 Sum_probs=73.6
Q ss_pred HHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhcccc
Q 008112 364 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATIT 443 (577)
Q Consensus 364 k~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~ 443 (577)
.-+...|+..|.|+.+.. |..+.-..+...-..|++.++. + ...-++.+...+++.+-. .++
T Consensus 61 ~alA~~a~~~G~~~~iv~-----------p~~~~~~k~~~~~~~GA~V~~~-~-----~~~~~a~~~a~~~~~~~~-~~~ 122 (380)
T TIGR01127 61 QGVAYAAKKFGIKAVIVM-----------PESAPPSKVKATKSYGAEVILH-G-----DDYDEAYAFATSLAEEEG-RVF 122 (380)
T ss_pred HHHHHHHHHcCCCEEEEE-----------cCCCcHHHHHHHHHCCCEEEEE-C-----CCHHHHHHHHHHHHHhcC-CEe
Confidence 356678999999987642 3333334466677899987764 2 234577777777655532 222
Q ss_pred CCCCCCCCCcccCCChhHHHHHHHHHHHhhcC-c-eEEEEcCChHHHHHHH----hhCCCCeEEEEcCcHH
Q 008112 444 GGAMPPNLGQAFKNHMSEMFAYHATMMSNTLG-T-SIVVFTRTGFMAILLS----HYRPSGTIFAFTNEKR 508 (577)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~-a-aIiV~T~sG~tA~~is----~~RP~~PIIAvT~~~~ 508 (577)
.. .|.+ + ........-+.++.++++ . .||+..-+|.+..-++ .+.|...||++-+...
T Consensus 123 ~~-~~~~---~---~~~~g~~t~~~Ei~~q~~~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~ 186 (380)
T TIGR01127 123 VH-PFDD---E---FVMAGQGTIGLEIMEDIPDVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGA 186 (380)
T ss_pred cC-CCCC---h---hhhhhhHHHHHHHHHhCCCCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 11 1211 0 111222334457777775 4 8999888898766554 4569999999999653
No 278
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=59.46 E-value=27 Score=38.09 Aligned_cols=96 Identities=11% Similarity=0.122 Sum_probs=58.3
Q ss_pred CHHHHHHHHhcCCCEEEEcCCC------CHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEEEEcC
Q 008112 278 DWDDIKFGVDNKVDFYAVSFVK------DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVAR 347 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~SfV~------sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGImIaR 347 (577)
..+|.+.+.+.|+|+|.+|..- .+..+..+.+.....+.++.||+- -||.+-.+|+++ +|++||||
T Consensus 238 ~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~d----GGIr~g~Dv~KaLalGAd~V~igR 313 (367)
T TIGR02708 238 CPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFD----SGVRRGQHVFKALASGADLVALGR 313 (367)
T ss_pred CHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEee----CCcCCHHHHHHHHHcCCCEEEEcH
Confidence 3688889999999999888632 122344454444434556777773 467777777665 99999999
Q ss_pred CCccC-CC-CCC---c-HHHHHHHHHHHHHHcCCce
Q 008112 348 GDLGA-EL-PIE---E-VPLLQEEIIRTCRSMGKAV 377 (577)
Q Consensus 348 GDLg~-el-g~e---~-v~~~qk~Ii~~c~~aGKPv 377 (577)
-=|-. .. |.+ + +..++.++-......|..-
T Consensus 314 ~~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~~ 349 (367)
T TIGR02708 314 PVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQT 349 (367)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 75421 11 322 2 2344445555555555443
No 279
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=59.27 E-value=33 Score=35.71 Aligned_cols=65 Identities=12% Similarity=0.188 Sum_probs=47.5
Q ss_pred CccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhh--HhhHHHHHHh-cCEEEEcC
Q 008112 275 TEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS--IPNLHSIITA-SDGAMVAR 347 (577)
Q Consensus 275 tekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~g--v~NldeIl~~-sDGImIaR 347 (577)
+-++.++++.+++.|+|+|.+..+ ++++++++.+.+. .++++.| .-| .+|+.++++. +|+|-++.
T Consensus 188 ev~s~eea~~A~~~gaDyI~ld~~-~~e~l~~~~~~~~---~~ipi~A----iGGI~~~ni~~~a~~Gvd~Iav~s 255 (268)
T cd01572 188 EVETLEQLKEALEAGADIIMLDNM-SPEELREAVALLK---GRVLLEA----SGGITLENIRAYAETGVDYISVGA 255 (268)
T ss_pred EECCHHHHHHHHHcCCCEEEECCc-CHHHHHHHHHHcC---CCCcEEE----ECCCCHHHHHHHHHcCCCEEEEEe
Confidence 345678888999999999999987 4777777776552 2444333 233 4689999988 99998874
No 280
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=59.26 E-value=2.6e+02 Score=30.12 Aligned_cols=147 Identities=14% Similarity=0.105 Sum_probs=89.7
Q ss_pred CCccCHHHHHHH-HhcCCCEEEE---------cCC-C--CHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHH---H
Q 008112 274 ITEKDWDDIKFG-VDNKVDFYAV---------SFV-K--DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSI---I 337 (577)
Q Consensus 274 ltekD~~dI~~a-l~~gvD~I~~---------SfV-~--sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeI---l 337 (577)
++..+...|-.+ -+.|+|.|=+ ||. . ...+.+.++.+... ..+.++.+.+- -+.-+.+++ .
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~-~~~~~~~~ll~--pg~~~~~dl~~a~ 98 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV-VKQAKIAALLL--PGIGTVDDLKMAY 98 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh-CCCCEEEEEec--cCcccHHHHHHHH
Confidence 355565665554 4689999877 443 1 11133344433322 24455555442 122233333 3
Q ss_pred Hh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHH-HHhccceEEec
Q 008112 338 TA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIA-VREGADAVMLS 415 (577)
Q Consensus 338 ~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~na-v~~G~D~imLs 415 (577)
+. .|.|-|+ ....+. ..-++.++.++++|.-+.+. +. .....+.+++.+.+.. ...|+|++.+.
T Consensus 99 ~~gvd~iri~-------~~~~e~-~~~~~~i~~ak~~G~~v~~~--l~----~a~~~~~e~l~~~a~~~~~~Ga~~i~i~ 164 (337)
T PRK08195 99 DAGVRVVRVA-------THCTEA-DVSEQHIGLARELGMDTVGF--LM----MSHMAPPEKLAEQAKLMESYGAQCVYVV 164 (337)
T ss_pred HcCCCEEEEE-------EecchH-HHHHHHHHHHHHCCCeEEEE--EE----eccCCCHHHHHHHHHHHHhCCCCEEEeC
Confidence 33 6777665 122233 24588999999999887653 22 1245677888887774 55699999995
Q ss_pred cccCCCCCHHHHHHHHHHHHHHH
Q 008112 416 GETAHGKFPLKAVKVMHTVSLRT 438 (577)
Q Consensus 416 ~ETa~G~yP~eaV~~m~~I~~~a 438 (577)
+|+=.-+|.+.-+.+..+-++.
T Consensus 165 -DT~G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 165 -DSAGALLPEDVRDRVRALRAAL 186 (337)
T ss_pred -CCCCCCCHHHHHHHHHHHHHhc
Confidence 9998999999888888877655
No 281
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=58.94 E-value=1.4e+02 Score=31.79 Aligned_cols=197 Identities=19% Similarity=0.244 Sum_probs=116.8
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHH--------------------------------------------HhcC
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYL--------------------------------------------KSCG 315 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l--------------------------------------------~~~~ 315 (577)
..|..+++.|+|+|.+. ++|+.+++++= ...|
T Consensus 19 ~~it~alEaG~d~vvv~----~~dvervkeLGni~vaa~~~daDiv~vgk~gegdgt~~lp~~~~~s~di~~~~~~~~~G 94 (376)
T COG1465 19 KRITAALEAGVDVVVVR----PADVERVKELGNIKVAAPSDDADIVVVGKDGEGDGTVDLPADISGSADIEALRELMDRG 94 (376)
T ss_pred HHHHHHHhcCCCEEEEC----HHHHHHHHhhCceEEecccCCCceEEeccCCCCCCcccCcccccccccHHHHHHhhhcC
Confidence 45778899999998764 46777776521 1234
Q ss_pred CCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCCh
Q 008112 316 ADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTR 395 (577)
Q Consensus 316 ~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~Ptr 395 (577)
........|.+.+-=+-..++...+|.+++---|..+ +|+|++. +. .++-+--++|. .-+-
T Consensus 95 ~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWki-IPLENlI-------A~-l~~e~~kliA~----------V~sa 155 (376)
T COG1465 95 HEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKI-IPLENLI-------AD-LQHEKVKLIAG----------VKSA 155 (376)
T ss_pred cceEEEEEEcCccchHHHHhhccccceEEEEcCcceE-eeHHHHH-------HH-hhccceEEEEE----------eccH
Confidence 4566788888887777777777778987775445432 5555431 11 12222223332 3355
Q ss_pred HhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccc-cC-----CCCCC------------CC------
Q 008112 396 AEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATI-TG-----GAMPP------------NL------ 451 (577)
Q Consensus 396 AEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~-~~-----~~~~~------------~l------ 451 (577)
.|..-....+..|+|+++|.++ .| +-++-...+.+++|..- .. ....+ +|
T Consensus 156 eEA~vA~eTLE~GaDgVll~~~-----d~-~eIk~~~~~~~e~~~E~~eL~~a~vt~ieplG~gDRVCVDTcsLm~~gEG 229 (376)
T COG1465 156 EEARVALETLEKGADGVLLDSD-----DP-EEIKKTAEVVEEAESERLELVTATVTEIEPLGSGDRVCVDTCSLMTRGEG 229 (376)
T ss_pred HHHHHHHHHHhccCceEEeCCC-----CH-HHHHHHHHHHHHhccceeEEEEEEEEEEeecCCCceEEEeeecccccCCc
Confidence 6666677899999999999755 45 56777778888887321 00 00000 00
Q ss_pred ---Cc----cc-CC--C-hhHHHHHHHHHHHhhcCc-eEEEEcCC-hHHHHHHHhhCCCCeEEEEcCcHHH
Q 008112 452 ---GQ----AF-KN--H-MSEMFAYHATMMSNTLGT-SIVVFTRT-GFMAILLSHYRPSGTIFAFTNEKRI 509 (577)
Q Consensus 452 ---~~----~~-~~--~-~~~~ia~~a~~~a~~~~a-aIiV~T~s-G~tA~~is~~RP~~PIIAvT~~~~t 509 (577)
++ .+ .+ + -....| .--++.|| ++=.|-+. |.-.++||-.++.=+++.+-.+-++
T Consensus 230 MLVGs~s~gmFlVhsEs~espYVA----aRPFRVNAG~VhaYi~vPg~kTkYLaEL~aGDeV~iVD~dGr~ 296 (376)
T COG1465 230 MLVGSQSRGMFLVHSESEESPYVA----ARPFRVNAGAVHAYIRVPGGKTKYLAELKAGDEVLIVDFDGRT 296 (376)
T ss_pred eEeecccCcEEEEecccccCcccc----cCceeecccceeEEEEcCCCceEEhhhhcCCCeEEEEecCCce
Confidence 00 00 00 0 000110 11245777 66665555 6677899999999999888776554
No 282
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=58.91 E-value=1.7e+02 Score=30.60 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=81.9
Q ss_pred CceEEE---eecC---hhhHhhHHHHHHh-----cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhH
Q 008112 317 DIHVIV---KIES---ADSIPNLHSIITA-----SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLE 385 (577)
Q Consensus 317 ~i~Iia---KIEt---~~gv~NldeIl~~-----sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~Le 385 (577)
++.|++ .+|. .++++|++.+++. +|+++.-+|=+..--+ -..+.+|.|+ .|.
T Consensus 23 ~~~i~a~DhGv~~g~p~~gl~d~e~~v~~v~~~g~dav~~~~G~~~~~~~--------------~y~~dvpliv---kl~ 85 (265)
T COG1830 23 RLLILAMDHGVEHGNPIEGLEDPENIVAKVAEAGADAVAMTPGIARSVHR--------------GYAHDVPLIV---KLN 85 (265)
T ss_pred CEEEEecccccccCCCcccccCHHHHHHHHHhcCCCEEEecHhHHhhcCc--------------cccCCcCEEE---Eec
Confidence 455555 3554 2467777776653 6677765443311111 1123577776 344
Q ss_pred hhhcCCCC--ChHhHHHHHHHHHhccceEEe----ccccCCCCCHHHHHHHHHHHHHHHhccccCC--CCCCCCCcccC-
Q 008112 386 SMIVHPTP--TRAEVSDIAIAVREGADAVML----SGETAHGKFPLKAVKVMHTVSLRTEATITGG--AMPPNLGQAFK- 456 (577)
Q Consensus 386 SM~~~~~P--trAEv~Dv~nav~~G~D~imL----s~ETa~G~yP~eaV~~m~~I~~~aE~~~~~~--~~~~~l~~~~~- 456 (577)
++.+-..+ ..+-+..+-.|+..|+|++-. .+|+- -+.++.+.++...+..+---. ..|+ .....+
T Consensus 86 ~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e-----~~~i~~~~~v~~~a~~~Gmp~v~~~Yp-Rg~~~~~ 159 (265)
T COG1830 86 GSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETE-----REMIENISQVVEDAHELGMPLVAWAYP-RGPAIKD 159 (265)
T ss_pred cccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcch-----HHHHHHHHHHHHHHHHcCCceEEEEec-cCCcccc
Confidence 44221111 222335566799999999864 34433 688888888888888652100 0011 011111
Q ss_pred --CChhHHHHHHHHHHHhhcCceEEE--EcCChHHHHHHHhhCC
Q 008112 457 --NHMSEMFAYHATMMSNTLGTSIVV--FTRTGFMAILLSHYRP 496 (577)
Q Consensus 457 --~~~~~~ia~~a~~~a~~~~aaIiV--~T~sG~tA~~is~~RP 496 (577)
....+.++ .|.+++.+++|=||= +|.+-.+=+.+-++-|
T Consensus 160 ~~~~d~~~v~-~aaRlaaelGADIiK~~ytg~~e~F~~vv~~~~ 202 (265)
T COG1830 160 EYHRDADLVG-YAARLAAELGADIIKTKYTGDPESFRRVVAACG 202 (265)
T ss_pred cccccHHHHH-HHHHHHHHhcCCeEeecCCCChHHHHHHHHhCC
Confidence 23445555 466788899994443 5554444444444444
No 283
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=58.63 E-value=51 Score=28.19 Aligned_cols=55 Identities=22% Similarity=0.453 Sum_probs=39.0
Q ss_pred eEEecccc-ccccccCCCCEEEEeCCeEEEEEEEEeCCeEEEEEe-------eCcEeccCceeee
Q 008112 208 ECVSVNYD-DFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVV-------DGGELKSRRHLNV 264 (577)
Q Consensus 208 ~~i~v~~~-~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~v~~~v~-------~gG~l~s~Kginl 264 (577)
-.+.+..+ ..+..+.+||.|-+|+ +.|.|.++.++.+...+. +=|.++.+.-||+
T Consensus 20 ~~~~i~~~~~~~~~~~~g~SIavnG--vcLTV~~~~~~~f~~~l~~eTl~~T~l~~~~~G~~VNl 82 (85)
T PF00677_consen 20 QRLRIEIPDKILSDLKIGGSIAVNG--VCLTVTDINEDWFEVDLIPETLRRTTLGNLKVGDRVNL 82 (85)
T ss_dssp EEEEEEESTGGGGTG-TTSEEEETT--EEEEEEEEETTEEEEEEEHHHHHCSSGGG--TTSEEEE
T ss_pred EEEEEEcCHHHHhhCccCcEEEECC--eeeEEEEecCCEEEEechHHHhhhchhccCCCCCEEEE
Confidence 34445555 7788999999999998 889999999998887764 3455555566665
No 284
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=58.56 E-value=1.1e+02 Score=32.26 Aligned_cols=116 Identities=20% Similarity=0.290 Sum_probs=73.2
Q ss_pred ceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEE---Eehhh-HhhhcCCC
Q 008112 318 IHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIV---ATNML-ESMIVHPT 392 (577)
Q Consensus 318 i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~---ATq~L-eSM~~~~~ 392 (577)
+++...+....-++.+..-+.. .+-||+. |-.+|+++=...-+++++.|++.|.+|=- ...-- +..... .
T Consensus 78 vPV~lHLDHg~~~e~i~~ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~-~ 152 (286)
T PRK08610 78 IPVAIHLDHGSSFEKCKEAIDAGFTSVMID----ASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVAD-G 152 (286)
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCc-c
Confidence 6888888887755554444433 6689996 44578888778889999999999998711 00000 100000 0
Q ss_pred CChHhHHHHHHHHH-hccceEEeccccCCCCC---HHHHHHHHHHHHHHH
Q 008112 393 PTRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVSLRT 438 (577)
Q Consensus 393 PtrAEv~Dv~nav~-~G~D~imLs~ETa~G~y---P~eaV~~m~~I~~~a 438 (577)
-......++..++. -|+|++..|-=|+.|.| |--=.+.+.+|....
T Consensus 153 ~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~ 202 (286)
T PRK08610 153 IIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST 202 (286)
T ss_pred cccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH
Confidence 00112344556665 59999999999999999 434455666665433
No 285
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=58.15 E-value=97 Score=34.71 Aligned_cols=130 Identities=9% Similarity=0.042 Sum_probs=77.2
Q ss_pred HHHHHhcCCCEEEEcCCCCHHH--HHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEEEEcCC-------
Q 008112 282 IKFGVDNKVDFYAVSFVKDAQV--VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARG------- 348 (577)
Q Consensus 282 I~~al~~gvD~I~~SfV~sa~d--v~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGImIaRG------- 348 (577)
++.|++.|+|+|-++. +| ...+|+.+ +.+.. .-+ +..|.+|+..+ .|.|.+|+=
T Consensus 270 ~dlAl~~gAdGVHLGQ----eDL~~~~aR~il---g~~~i--IGv----StHs~eEl~~A~~~gaDYI~lGPIFpT~TK~ 336 (437)
T PRK12290 270 WQLAIKHQAYGVHLGQ----EDLEEANLAQLT---DAGIR--LGL----STHGYYELLRIVQIQPSYIALGHIFPTTTKQ 336 (437)
T ss_pred HHHHHHcCCCEEEcCh----HHcchhhhhhhc---CCCCE--EEE----ecCCHHHHHHHhhcCCCEEEECCccCCCCCC
Confidence 3456778899998873 33 33444443 22221 222 34566676655 799999853
Q ss_pred CccCCCCCCcHHHHHHHHH--HHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHH
Q 008112 349 DLGAELPIEEVPLLQEEII--RTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLK 426 (577)
Q Consensus 349 DLg~elg~e~v~~~qk~Ii--~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~e 426 (577)
+-...+|++.+..+++.+- ..++..++|++--..+= ..++......|+|++-+.+.-..-..|.+
T Consensus 337 ~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~-------------~~Ni~~vl~aGa~GVAVVSAI~~A~DP~a 403 (437)
T PRK12290 337 MPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGID-------------QSNAEQVWQCGVSSLAVVRAITLAEDPQL 403 (437)
T ss_pred CCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcC-------------HHHHHHHHHcCCCEEEEehHhhcCCCHHH
Confidence 1223345445544433321 12334578976533221 23466777889999998777666678999
Q ss_pred HHHHHHHHHHH
Q 008112 427 AVKVMHTVSLR 437 (577)
Q Consensus 427 aV~~m~~I~~~ 437 (577)
+++.+.++...
T Consensus 404 a~~~l~~~~~~ 414 (437)
T PRK12290 404 VIEFFDQVMAE 414 (437)
T ss_pred HHHHHHHHHhh
Confidence 99988877554
No 286
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=57.95 E-value=29 Score=38.05 Aligned_cols=94 Identities=20% Similarity=0.171 Sum_probs=64.9
Q ss_pred CHHHHHHHHhcC-CCEEEEcCCC-----------------CHHHHHHHHHHHHhcC--CCceEEEeecChhhHhhHHHHH
Q 008112 278 DWDDIKFGVDNK-VDFYAVSFVK-----------------DAQVVHELKNYLKSCG--ADIHVIVKIESADSIPNLHSII 337 (577)
Q Consensus 278 D~~dI~~al~~g-vD~I~~SfV~-----------------sa~dv~~lr~~l~~~~--~~i~IiaKIEt~~gv~NldeIl 337 (577)
+.+++..+++.+ +|+|.++--. +..-+.++++++...+ .++.||+ --||.+-.+++
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~via----sGGI~~g~Dv~ 301 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIA----SGGLRTGADVA 301 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEE----ECCCCCHHHHH
Confidence 666888888777 9999998874 2233455566665443 3577777 35777777777
Q ss_pred Hh----cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhh
Q 008112 338 TA----SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNML 384 (577)
Q Consensus 338 ~~----sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~L 384 (577)
+. +|++.+||.=|-.- --.....|+.-..|+++|||--
T Consensus 302 kalaLGAd~V~ig~~~l~al---------~c~~~~~c~~~~cP~Giat~~~ 343 (392)
T cd02808 302 KALALGADAVGIGTAALIAL---------GCIQARKCHTNTCPVGVATQDP 343 (392)
T ss_pred HHHHcCCCeeeechHHHHhc---------chHHHHhcCCCCCCcccccCCh
Confidence 65 99999997655221 1124488999999999999943
No 287
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=57.82 E-value=2.6e+02 Score=29.68 Aligned_cols=127 Identities=9% Similarity=-0.039 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhcccc
Q 008112 364 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATIT 443 (577)
Q Consensus 364 k~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~ 443 (577)
.-+...|++.|.++++-.. ..+.+.. ...-.-..|++..+...+.... ....+.+....+..+-...++
T Consensus 85 ~alA~~a~~~G~~~~ivvp------~~~~~~~----~~~l~~~~Ga~v~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 153 (329)
T PRK14045 85 FVTGLAAKKLGLDAVLVLR------GKEELKG----NYLLDKIMGIETRVYEAKDSFE-LMKYAEEVAEELKGEGRKPYI 153 (329)
T ss_pred HHHHHHHHHcCCeEEEEEe------CCCCCCc----CHHHHHHCCCEEEEECCCcccc-hHHHHHHHHHHHHhcCCCEEE
Confidence 3566789999999877433 1111110 1111234788877654321111 122333433333322111111
Q ss_pred CCCCCCCCCcccCCChhHHHHHHHHHHHhhcC-----c-eEEEEcCChHHHHHHHhh----CCCCeEEEEcCcH
Q 008112 444 GGAMPPNLGQAFKNHMSEMFAYHATMMSNTLG-----T-SIVVFTRTGFMAILLSHY----RPSGTIFAFTNEK 507 (577)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~-----a-aIiV~T~sG~tA~~is~~----RP~~PIIAvT~~~ 507 (577)
....+. ...-.......+.++.++++ . .||+.+=||.|+--++++ .|.+.|+++.+..
T Consensus 154 ~p~~~~------n~~~~~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 154 IPPGGA------SPVGTLGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred ECCCCC------chhHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 111000 11122333334446666553 4 799999999998766654 5999999999865
No 288
>PRK07695 transcriptional regulator TenI; Provisional
Probab=57.69 E-value=27 Score=34.13 Aligned_cols=34 Identities=0% Similarity=-0.029 Sum_probs=28.3
Q ss_pred HHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHH
Q 008112 125 MIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (577)
Q Consensus 125 ~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 158 (577)
.+.+++++|++.+-|.--|.+.++..+.++.+++
T Consensus 19 ~~~~~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~ 52 (201)
T PRK07695 19 AVAMQIHSEVDYIHIREREKSAKELYEGVESLLK 52 (201)
T ss_pred HHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3445899999999999999999988888777773
No 289
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=57.49 E-value=69 Score=31.55 Aligned_cols=68 Identities=10% Similarity=0.126 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCCceEEEeecChhh-HhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 008112 304 VHELKNYLKSCGADIHVIVKIESADS-IPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (577)
Q Consensus 304 v~~lr~~l~~~~~~i~IiaKIEt~~g-v~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~AT 381 (577)
++.+++.+.+.|.++.|.+.-|.... .++.++++...|.|+.+-. . ......+-+.|+++++|++.+.
T Consensus 77 a~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d---------~-~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 77 AAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEE---------N-YERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCC---------C-HHHHHHHHHHHHHcCCCEEEEE
Confidence 45667778888999888876665532 4577888888998887622 2 4456668899999999998763
No 290
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=57.42 E-value=1.5e+02 Score=31.61 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEEEEcCCCccCC-
Q 008112 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARGDLGAE- 353 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGImIaRGDLg~e- 353 (577)
....+...+.|+|+|..|-+.++.| ++-...+.. .+.++++ +..|++|-+.. +|.|-- -|+.|.-
T Consensus 86 ~~Ea~~L~~~GvDiID~Te~lrpad--~~~~~~K~~-f~~~fma------d~~~l~EAlrai~~GadmI~T-tge~gtg~ 155 (293)
T PRK04180 86 FVEAQILEALGVDYIDESEVLTPAD--EEYHIDKWD-FTVPFVC------GARNLGEALRRIAEGAAMIRT-KGEAGTGN 155 (293)
T ss_pred HHHHHHHHHcCCCEEeccCCCCchH--HHHHHHHHH-cCCCEEc------cCCCHHHHHHHHHCCCCeeec-cCCCCCcc
Confidence 4445555789999999999999933 444444332 2677777 55566665554 333321 1221110
Q ss_pred ------------------CCC--CcHHHH------HHHHHHH-HHHcCCceE-EEehhhHhhhcCCCCChHhHHHHHHHH
Q 008112 354 ------------------LPI--EEVPLL------QEEIIRT-CRSMGKAVI-VATNMLESMIVHPTPTRAEVSDIAIAV 405 (577)
Q Consensus 354 ------------------lg~--e~v~~~------qk~Ii~~-c~~aGKPvi-~ATq~LeSM~~~~~PtrAEv~Dv~nav 405 (577)
.++ +.+... --++++. ++....||+ +|- ...-|. .|+..+.
T Consensus 156 v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~Ae--------GGI~TP---edaa~vm 224 (293)
T PRK04180 156 VVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAA--------GGIATP---ADAALMM 224 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEe--------CCCCCH---HHHHHHH
Confidence 000 011100 0122222 333468886 221 112234 3466777
Q ss_pred HhccceEEeccccCCCCCHHHHHHHHHHHHHHHh
Q 008112 406 REGADAVMLSGETAHGKFPLKAVKVMHTVSLRTE 439 (577)
Q Consensus 406 ~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE 439 (577)
..|+|++++.+.-.....|.+.++.+........
T Consensus 225 e~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~ 258 (293)
T PRK04180 225 QLGADGVFVGSGIFKSGDPEKRARAIVEATTHYD 258 (293)
T ss_pred HhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcC
Confidence 8999999998776666789998887776654433
No 291
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=56.93 E-value=25 Score=36.57 Aligned_cols=64 Identities=11% Similarity=0.160 Sum_probs=46.9
Q ss_pred CccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhh--HhhHHHHHHh-cCEEEEc
Q 008112 275 TEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS--IPNLHSIITA-SDGAMVA 346 (577)
Q Consensus 275 tekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~g--v~NldeIl~~-sDGImIa 346 (577)
+-++.+.++.+.+.|+|+|.+..+ ++++++++.+.+. .++++.| .-| .+|+.++++. +|+|-++
T Consensus 184 ev~t~eea~~A~~~gaDyI~ld~~-~~e~lk~~v~~~~---~~ipi~A----sGGI~~~ni~~~a~~Gvd~Isvg 250 (265)
T TIGR00078 184 EVESLEEAEEAAEAGADIIMLDNM-KPEEIKEAVQLLK---GRVLLEA----SGGITLDNLEEYAETGVDVISSG 250 (265)
T ss_pred EeCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhc---CCCcEEE----ECCCCHHHHHHHHHcCCCEEEeC
Confidence 335678888999999999999886 5677887777652 2344433 333 4688999988 9999984
No 292
>PRK06381 threonine synthase; Validated
Probab=56.79 E-value=2.2e+02 Score=29.86 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=74.8
Q ss_pred HHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccC
Q 008112 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (577)
Q Consensus 365 ~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~ 444 (577)
-+...|+..|.|+++.. |.......+...-..|++.+...+ .| -++++...+.++. +..++.
T Consensus 77 alA~~aa~~G~~~~ivv-----------p~~~~~~~~~~l~~~GA~V~~~~~-----~~-~~~~~~a~~~~~~-~~~~~~ 138 (319)
T PRK06381 77 SIAYFARLYGLKAVIFI-----------PRSYSNSRVKEMEKYGAEIIYVDG-----KY-EEAVERSRKFAKE-NGIYDA 138 (319)
T ss_pred HHHHHHHHcCCcEEEEE-----------CCCCCHHHHHHHHHcCCEEEEcCC-----CH-HHHHHHHHHHHHH-cCcEec
Confidence 45668999999998742 233333445667789999988864 23 4677777776654 222211
Q ss_pred CCCCCCCCcccCCChhHHHHHHHHHHHhhcC--c-eEEEEcCChHHHHHHHhh----------CCCCeEEEEcCcH
Q 008112 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLG--T-SIVVFTRTGFMAILLSHY----------RPSGTIFAFTNEK 507 (577)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~--a-aIiV~T~sG~tA~~is~~----------RP~~PIIAvT~~~ 507 (577)
.....+ + ....+....-+.++.++++ . .||+.+-+|.|+--++++ .|...|+++.+..
T Consensus 139 ~~~~~n---~--~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~ 209 (319)
T PRK06381 139 NPGSVN---S--VVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSG 209 (319)
T ss_pred CCCCCC---c--chHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCC
Confidence 110000 0 0112334445567777765 3 899999999988777764 6888999998854
No 293
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=56.73 E-value=79 Score=32.27 Aligned_cols=112 Identities=18% Similarity=0.138 Sum_probs=69.3
Q ss_pred HHHHHHHhcCCCEEEE---------------cCCCCHHHHHHHHHHHHhcCC--CceEEEeecCh--------hhHhhHH
Q 008112 280 DDIKFGVDNKVDFYAV---------------SFVKDAQVVHELKNYLKSCGA--DIHVIVKIESA--------DSIPNLH 334 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~---------------SfV~sa~dv~~lr~~l~~~~~--~i~IiaKIEt~--------~gv~Nld 334 (577)
+.++...+.|+++|.+ ..+...+.+..++........ +..|+|..|.. ++++...
T Consensus 88 ~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ 167 (243)
T cd00377 88 RTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAK 167 (243)
T ss_pred HHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHH
Confidence 3355666789999988 555666666667666655554 89999996664 3444445
Q ss_pred HHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCC-CChHhHHHHHHHHHhccceE
Q 008112 335 SIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPT-PTRAEVSDIAIAVREGADAV 412 (577)
Q Consensus 335 eIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~-PtrAEv~Dv~nav~~G~D~i 412 (577)
.-.++ +|++|+-... -.+++-+.+++...|+.+- +..++. ++..| .-..|+..+
T Consensus 168 ay~~AGAD~v~v~~~~------------~~~~~~~~~~~~~~Pl~~~------~~~~~~~~~~~~------l~~lG~~~v 223 (243)
T cd00377 168 AYAEAGADGIFVEGLK------------DPEEIRAFAEAPDVPLNVN------MTPGGNLLTVAE------LAELGVRRV 223 (243)
T ss_pred HHHHcCCCEEEeCCCC------------CHHHHHHHHhcCCCCEEEE------ecCCCCCCCHHH------HHHCCCeEE
Confidence 55555 9999984221 2255556667788998763 112221 34444 344688877
Q ss_pred Eec
Q 008112 413 MLS 415 (577)
Q Consensus 413 mLs 415 (577)
...
T Consensus 224 ~~~ 226 (243)
T cd00377 224 SYG 226 (243)
T ss_pred EEC
Confidence 663
No 294
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.58 E-value=32 Score=36.07 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=47.2
Q ss_pred CccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEE--eecChhhHhhHHHHHHh-cCEEEEcC
Q 008112 275 TEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITA-SDGAMVAR 347 (577)
Q Consensus 275 tekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~Iia--KIEt~~gv~NldeIl~~-sDGImIaR 347 (577)
+-++.++++.+.+.|+|+|.+.. -+.++++++++.+. ..+.+.| -| -.+|+.++++. +|+|-+|.
T Consensus 194 sv~tleea~~A~~~gaDyI~lD~-~~~e~l~~~~~~~~---~~i~i~AiGGI----t~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 194 ETETEEQVREAVAAGADIIMFDN-RTPDEIREFVKLVP---SAIVTEASGGI----TLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred EeCCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHhcC---CCceEEEECCC----CHHHHHHHHHcCCCEEEECh
Confidence 44677888899999999999975 57788887777552 2333222 23 34688999988 99999984
No 295
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=56.51 E-value=2.6e+02 Score=29.44 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcC------------------------------CCceEEEeecChh
Q 008112 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCG------------------------------ADIHVIVKIESAD 328 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~------------------------------~~i~IiaKIEt~~ 328 (577)
.+.++.|.+.+.- |..-.|.+.+.++.+.+...+.+ ..+++...+....
T Consensus 7 k~iL~~A~~~~ya-V~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~~ 85 (284)
T PRK12857 7 AELLKKAEKGGYA-VGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHGT 85 (284)
T ss_pred HHHHHHHHHcCCe-EEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_pred hHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCce---EEEehhhHhhhcCCCCC--hHhHHHHH
Q 008112 329 SIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAV---IVATNMLESMIVHPTPT--RAEVSDIA 402 (577)
Q Consensus 329 gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPv---i~ATq~LeSM~~~~~Pt--rAEv~Dv~ 402 (577)
-++.+..-+.. .+-||+. |-++|+++=...-+++++.|+..|..| +-...--|.-+....-. .....++.
T Consensus 86 ~~e~i~~ai~~GftSVM~D----gS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~ 161 (284)
T PRK12857 86 DFEQVMKCIRNGFTSVMID----GSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEAR 161 (284)
T ss_pred CHHHHHHHHHcCCCeEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHH
Q ss_pred HHHHh-ccceEEeccccCCCCC---HHHHHHHHHHHHHHH
Q 008112 403 IAVRE-GADAVMLSGETAHGKF---PLKAVKVMHTVSLRT 438 (577)
Q Consensus 403 nav~~-G~D~imLs~ETa~G~y---P~eaV~~m~~I~~~a 438 (577)
.++.. |+|++..|-=|+.|.| |---...|.+|....
T Consensus 162 ~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~ 201 (284)
T PRK12857 162 RFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELV 201 (284)
T ss_pred HHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh
No 296
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=56.45 E-value=2e+02 Score=29.93 Aligned_cols=76 Identities=28% Similarity=0.283 Sum_probs=52.3
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHH
Q 008112 351 GAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 430 (577)
Q Consensus 351 g~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~ 430 (577)
|-..|+.+ ++..+.|.+. .+.|||+... .=|. +|++.++..|+|++++.+=-+.++.|..-.+.
T Consensus 156 Gsg~Gi~~-~~~I~~I~e~---~~vpVI~egG---------I~tp---eda~~AmelGAdgVlV~SAIt~a~dP~~ma~a 219 (248)
T cd04728 156 GSGQGLLN-PYNLRIIIER---ADVPVIVDAG---------IGTP---SDAAQAMELGADAVLLNTAIAKAKDPVAMARA 219 (248)
T ss_pred CCCCCCCC-HHHHHHHHHh---CCCcEEEeCC---------CCCH---HHHHHHHHcCCCEEEEChHhcCCCCHHHHHHH
Confidence 33345544 4444544433 4789987543 2233 56889999999999998777788889988888
Q ss_pred HHHHHHHHhccc
Q 008112 431 MHTVSLRTEATI 442 (577)
Q Consensus 431 m~~I~~~aE~~~ 442 (577)
+..-++.-...+
T Consensus 220 f~~Av~aGr~a~ 231 (248)
T cd04728 220 FKLAVEAGRLAY 231 (248)
T ss_pred HHHHHHHHHHHH
Confidence 877776655443
No 297
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=56.35 E-value=2.9e+02 Score=29.76 Aligned_cols=137 Identities=19% Similarity=0.183 Sum_probs=76.2
Q ss_pred CHHHHHHHHhcCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-----cCEEEEcCCCcc
Q 008112 278 DWDDIKFGVDNKVDFYAVSF-VKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGAMVARGDLG 351 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~Sf-V~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-----sDGImIaRGDLg 351 (577)
+.+|++.+.++|+|+|-+.+ ...++.+.+..++.++.|.++.+...--+....+.+.++++. +|.|.++ |=.
T Consensus 90 ~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~--DT~ 167 (337)
T PRK08195 90 TVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVV--DSA 167 (337)
T ss_pred cHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeC--CCC
Confidence 35789999999999977664 444455555566666777654433322222223333333332 6777664 322
Q ss_pred CCCCCCcHHHHHHHHHHHHHHc---CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec----cccCCCCCH
Q 008112 352 AELPIEEVPLLQEEIIRTCRSM---GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS----GETAHGKFP 424 (577)
Q Consensus 352 ~elg~e~v~~~qk~Ii~~c~~a---GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs----~ETa~G~yP 424 (577)
| .-.|.--.+++.+.++. .+|+.+-++ + ...-|-. -...|+..|+|.|=-| |+ ..|+=|
T Consensus 168 ---G-~~~P~~v~~~v~~l~~~l~~~i~ig~H~H------n--nlGla~A-NslaAi~aGa~~iD~Sl~GlG~-~aGN~~ 233 (337)
T PRK08195 168 ---G-ALLPEDVRDRVRALRAALKPDTQVGFHGH------N--NLGLGVA-NSLAAVEAGATRIDGSLAGLGA-GAGNTP 233 (337)
T ss_pred ---C-CCCHHHHHHHHHHHHHhcCCCCeEEEEeC------C--CcchHHH-HHHHHHHhCCCEEEecChhhcc-cccCcc
Confidence 2 13444555566665554 577777554 1 1111111 1233788898865432 44 578999
Q ss_pred HHHHHH
Q 008112 425 LKAVKV 430 (577)
Q Consensus 425 ~eaV~~ 430 (577)
.|.+-.
T Consensus 234 tE~lv~ 239 (337)
T PRK08195 234 LEVLVA 239 (337)
T ss_pred HHHHHH
Confidence 887654
No 298
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=56.24 E-value=2.1e+02 Score=28.17 Aligned_cols=113 Identities=18% Similarity=0.208 Sum_probs=75.5
Q ss_pred CccCHHHHH-HHHhcCCCEEEEc-----CCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhh---HHHHHHh-cCEEE
Q 008112 275 TEKDWDDIK-FGVDNKVDFYAVS-----FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPN---LHSIITA-SDGAM 344 (577)
Q Consensus 275 tekD~~dI~-~al~~gvD~I~~S-----fV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~N---ldeIl~~-sDGIm 344 (577)
+..|+.++. ...+.|++++.+. |-.+.++++.+++.. +++|+.| ..+.+ +++..+. +|++.
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v-----~iPi~~~----~~i~~~~~v~~~~~~Gad~v~ 99 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV-----SLPVLRK----DFIIDPYQIYEARAAGADAVL 99 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc-----CCCEEEC----CeecCHHHHHHHHHcCCCEEE
Confidence 455666654 4567899999763 446788888888864 5777765 23333 4444444 99999
Q ss_pred EcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEecccc
Q 008112 345 VARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGET 418 (577)
Q Consensus 345 IaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ET 418 (577)
++--||. . ..-++++..++..|..+++.+. +-.| +..+...|+|.+..++.+
T Consensus 100 l~~~~~~-------~-~~~~~~~~~~~~~g~~~~v~v~-----------~~~e---~~~~~~~g~~~i~~t~~~ 151 (217)
T cd00331 100 LIVAALD-------D-EQLKELYELARELGMEVLVEVH-----------DEEE---LERALALGAKIIGINNRD 151 (217)
T ss_pred EeeccCC-------H-HHHHHHHHHHHHcCCeEEEEEC-----------CHHH---HHHHHHcCCCEEEEeCCC
Confidence 8644432 1 4457778888889999876653 3333 667778899999988543
No 299
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=56.05 E-value=63 Score=31.88 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 008112 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (577)
Q Consensus 303 dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~AT 381 (577)
-+..+.+.+.+.+.++.+-+.-++... +|++++++-.|.|+.+-.. +..+..+-+.|+++++|++.+.
T Consensus 76 Ka~~~~~~l~~~np~v~i~~~~~~i~~-~~~~~~~~~~D~Vi~~~d~----------~~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 76 KVEVAAQRLRELNSDIQVTALKERVTA-ENLELLINNVDLVLDCTDN----------FATRYLINDACVALGTPLISAA 143 (202)
T ss_pred HHHHHHHHHHHhCCCCEEEEehhcCCH-HHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 345556667777777766554444333 5788888889988876322 3567778899999999998753
No 300
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=56.03 E-value=2.2e+02 Score=28.47 Aligned_cols=131 Identities=15% Similarity=0.235 Sum_probs=68.3
Q ss_pred CHHHHHHHHhcCCCEEEEcC--CCCHHHHHHHHHHHHhcCCC-ce--EEEee---------------cCh-hhHhhHHHH
Q 008112 278 DWDDIKFGVDNKVDFYAVSF--VKDAQVVHELKNYLKSCGAD-IH--VIVKI---------------ESA-DSIPNLHSI 336 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~Sf--V~sa~dv~~lr~~l~~~~~~-i~--IiaKI---------------Et~-~gv~NldeI 336 (577)
+.+|++..++.|+|.+.+.. .++++.+.++.+.+ +.+ +. +=+|+ ++. +.++-+..+
T Consensus 82 s~~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~---~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 158 (243)
T cd04731 82 SLEDARRLLRAGADKVSINSAAVENPELIREIAKRF---GSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEV 158 (243)
T ss_pred CHHHHHHHHHcCCceEEECchhhhChHHHHHHHHHc---CCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHH
Confidence 56777777888999877653 45666666655544 322 11 11221 111 112222222
Q ss_pred HHh-cCEEEEc-CCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHh-ccceEE
Q 008112 337 ITA-SDGAMVA-RGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVRE-GADAVM 413 (577)
Q Consensus 337 l~~-sDGImIa-RGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~-G~D~im 413 (577)
.+. +|.|.+. +..=+..-++ .+.. +-+.++..+.|++.+..+- +. .|+..+... |+|++|
T Consensus 159 ~~~G~d~i~v~~i~~~g~~~g~-~~~~----i~~i~~~~~~pvia~GGi~---------~~---~di~~~l~~~g~dgv~ 221 (243)
T cd04731 159 EELGAGEILLTSMDRDGTKKGY-DLEL----IRAVSSAVNIPVIASGGAG---------KP---EHFVEAFEEGGADAAL 221 (243)
T ss_pred HHCCCCEEEEeccCCCCCCCCC-CHHH----HHHHHhhCCCCEEEeCCCC---------CH---HHHHHHHHhCCCCEEE
Confidence 222 7888873 2111111111 2222 2222344689999865433 33 345555654 999999
Q ss_pred eccccCCCCCHHHHH
Q 008112 414 LSGETAHGKFPLKAV 428 (577)
Q Consensus 414 Ls~ETa~G~yP~eaV 428 (577)
++.---.|.+..+.+
T Consensus 222 vg~al~~~~~~~~~~ 236 (243)
T cd04731 222 AASIFHFGEYTIAEL 236 (243)
T ss_pred EeHHHHcCCCCHHHH
Confidence 976555777765543
No 301
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=55.71 E-value=50 Score=37.36 Aligned_cols=117 Identities=19% Similarity=0.179 Sum_probs=79.8
Q ss_pred HhcCCCEEEE---cCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHH-HHHh-cCEEEEcCCCccCCCCCC---
Q 008112 286 VDNKVDFYAV---SFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHS-IITA-SDGAMVARGDLGAELPIE--- 357 (577)
Q Consensus 286 l~~gvD~I~~---SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~Nlde-Il~~-sDGImIaRGDLg~elg~e--- 357 (577)
..-|+|.|.= ..+-|.+|+.++..-|++.+..-.|..|+=...+++-+.. .+++ +|.|.|.-.|=|.-..+.
T Consensus 269 ~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~ 348 (485)
T COG0069 269 SPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSI 348 (485)
T ss_pred CCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHh
Confidence 3456665531 2467899999999999999877779999988888887776 4544 999999866654433221
Q ss_pred ---------cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEe
Q 008112 358 ---------EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (577)
Q Consensus 358 ---------~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imL 414 (577)
-++++++.+...-.+ .++.+.+..-|- | -.||+.|+..|+|.+-.
T Consensus 349 ~~~GiP~e~glae~~q~L~~~glR-d~v~l~~~Ggl~--------T---g~DVaka~aLGAd~v~~ 402 (485)
T COG0069 349 DHAGIPWELGLAETHQTLVLNGLR-DKVKLIADGGLR--------T---GADVAKAAALGADAVGF 402 (485)
T ss_pred hcCCchHHHHHHHHHHHHHHcCCc-ceeEEEecCCcc--------C---HHHHHHHHHhCcchhhh
Confidence 355566555544433 566665555442 2 36899999999998754
No 302
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=55.62 E-value=2e+02 Score=30.68 Aligned_cols=131 Identities=18% Similarity=0.288 Sum_probs=67.3
Q ss_pred CCCccCHHHH--------HHHHhcCCCEEEE-------------cCCCC------------HHHHHHHHHHHH-hcCCCc
Q 008112 273 SITEKDWDDI--------KFGVDNKVDFYAV-------------SFVKD------------AQVVHELKNYLK-SCGADI 318 (577)
Q Consensus 273 ~ltekD~~dI--------~~al~~gvD~I~~-------------SfV~s------------a~dv~~lr~~l~-~~~~~i 318 (577)
.+|+.|++.+ +.+.+.|+|+|=+ |..+. ..-+.++.+.+. ..|.+.
T Consensus 138 ~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~ 217 (338)
T cd04733 138 AMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGF 217 (338)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 5777777665 4667899999965 33332 122223333333 236788
Q ss_pred eEEEeecC----------hhhHhhHHHHHHh-cCEEEEcCCCccCCC-------CCCcHHHHHHHHHHHHH-HcCCceEE
Q 008112 319 HVIVKIES----------ADSIPNLHSIITA-SDGAMVARGDLGAEL-------PIEEVPLLQEEIIRTCR-SMGKAVIV 379 (577)
Q Consensus 319 ~IiaKIEt----------~~gv~NldeIl~~-sDGImIaRGDLg~el-------g~e~v~~~qk~Ii~~c~-~aGKPvi~ 379 (577)
.|..||=. .++++=++.+.+. .|.|-|.-|-..-.. +...-...+....+..+ ..+.||+.
T Consensus 218 ~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~ 297 (338)
T cd04733 218 PVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMV 297 (338)
T ss_pred eEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEE
Confidence 88988831 1122222232222 677776655321000 00000111122332223 35899988
Q ss_pred EehhhHhhhcCCCCChHhHHHHHHHHHhc-cceEEec
Q 008112 380 ATNMLESMIVHPTPTRAEVSDIAIAVREG-ADAVMLS 415 (577)
Q Consensus 380 ATq~LeSM~~~~~PtrAEv~Dv~nav~~G-~D~imLs 415 (577)
...+- |. .+...++..| +|.|++.
T Consensus 298 ~G~i~---------t~---~~a~~~l~~g~aD~V~lg 322 (338)
T cd04733 298 TGGFR---------TR---AAMEQALASGAVDGIGLA 322 (338)
T ss_pred eCCCC---------CH---HHHHHHHHcCCCCeeeeC
Confidence 65431 22 4466788876 8999985
No 303
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=55.54 E-value=2.2e+02 Score=30.04 Aligned_cols=119 Identities=19% Similarity=0.287 Sum_probs=73.9
Q ss_pred CCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEE-ehhh--HhhhcCC
Q 008112 316 ADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA-TNML--ESMIVHP 391 (577)
Q Consensus 316 ~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A-Tq~L--eSM~~~~ 391 (577)
.+++|...+.....++.+..-+.. .+.||+. |-.+|+++=...-+++++.|++.|..|=.= -++- |....+.
T Consensus 72 ~~vPValHLDH~~~~e~i~~ai~~GftSVM~D----gS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~ 147 (287)
T PF01116_consen 72 ASVPVALHLDHGKDFEDIKRAIDAGFTSVMID----GSALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESE 147 (287)
T ss_dssp STSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-----TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSS
T ss_pred cCCCEEeecccCCCHHHHHHHHHhCccccccc----CCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCcccc
Confidence 468999999988877766666655 7899996 336788887788899999999999887321 1111 1111111
Q ss_pred C---CChHhHHHHHHHH-HhccceEEeccccCCCCCHH-----HHHHHHHHHHHHH
Q 008112 392 T---PTRAEVSDIAIAV-REGADAVMLSGETAHGKFPL-----KAVKVMHTVSLRT 438 (577)
Q Consensus 392 ~---PtrAEv~Dv~nav-~~G~D~imLs~ETa~G~yP~-----eaV~~m~~I~~~a 438 (577)
. -...+-.++..++ .-|+|++-.|-=|+.|.|+- -=...|.+|.+.+
T Consensus 148 ~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~ 203 (287)
T PF01116_consen 148 EETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAV 203 (287)
T ss_dssp TT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhc
Confidence 0 0111223445555 57999999999999999985 2344455554444
No 304
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=55.44 E-value=7.4 Score=29.12 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=19.7
Q ss_pred CcEEEEecc-CCChHHHHHHHHHHH
Q 008112 134 MNVARLNMS-HGDHASHQKVIDLVK 157 (577)
Q Consensus 134 m~v~RiN~s-Hg~~e~~~~~i~~ir 157 (577)
+.|.+++|| |++.++..++++.++
T Consensus 7 a~v~~~~fSgHad~~~L~~~i~~~~ 31 (43)
T PF07521_consen 7 ARVEQIDFSGHADREELLEFIEQLN 31 (43)
T ss_dssp SEEEESGCSSS-BHHHHHHHHHHHC
T ss_pred EEEEEEeecCCCCHHHHHHHHHhcC
Confidence 678999998 999999888888764
No 305
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=55.41 E-value=1.1e+02 Score=32.07 Aligned_cols=95 Identities=14% Similarity=0.127 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCCEEEEc------CCCCHHHHHHHHH-HHHhcCCCceEEEeecChhhHhhHHHHHHh-----cCEEEEcC
Q 008112 280 DDIKFGVDNKVDFYAVS------FVKDAQVVHELKN-YLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGAMVAR 347 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~S------fV~sa~dv~~lr~-~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-----sDGImIaR 347 (577)
+.+++.++.|+|+|.+. +--|.++=.++.+ ..+..+.++.|++-+-. ..++.-+.++. +|++|+-+
T Consensus 30 ~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~--~t~~ai~~a~~a~~~Gadav~~~p 107 (296)
T TIGR03249 30 ENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG--NTSDAIEIARLAEKAGADGYLLLP 107 (296)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc--cHHHHHHHHHHHHHhCCCEEEECC
Confidence 44578889999999863 3345555555544 44555667889998742 34433333332 79999876
Q ss_pred CCccCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 348 GDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 348 GDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
--+.- ...+.+...-+.|. .+.+.|+++.
T Consensus 108 P~y~~-~s~~~i~~~f~~v~---~a~~~pvilY 136 (296)
T TIGR03249 108 PYLIN-GEQEGLYAHVEAVC---ESTDLGVIVY 136 (296)
T ss_pred CCCCC-CCHHHHHHHHHHHH---hccCCCEEEE
Confidence 54321 12234444444444 4457898875
No 306
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=55.29 E-value=1.7e+02 Score=30.58 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=86.7
Q ss_pred CCCCccCHHHH-HHHHh--cCCCEEEEcCCCCHHHHHHHHHHHHhcCC-CceEEEeecChhhHhhHHHHHHhcC-EEEEc
Q 008112 272 PSITEKDWDDI-KFGVD--NKVDFYAVSFVKDAQVVHELKNYLKSCGA-DIHVIVKIESADSIPNLHSIITASD-GAMVA 346 (577)
Q Consensus 272 p~ltekD~~dI-~~al~--~gvD~I~~SfV~sa~dv~~lr~~l~~~~~-~i~IiaKIEt~~gv~NldeIl~~sD-GImIa 346 (577)
|..|+.|.+.+ +.|.+ .++..|+++ +..+..+++.|...+. ++++.+=|=-|.|-...+..+..+. .+--|
T Consensus 21 p~~T~~~I~~lc~eA~~~~~~faaVcV~----P~~v~~a~~~L~~~~~~~vkv~tVigFP~G~~~t~~K~~Ea~~Ai~~G 96 (257)
T PRK05283 21 DDDTDEKVIALCHQAKTPVGNTAAICIY----PRFIPIARKTLREQGTPEIRIATVTNFPHGNDDIDIALAETRAAIAYG 96 (257)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEEC----HHHHHHHHHHhcccCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcC
Confidence 55666665444 55666 477777664 6789999998864344 6888888888888776665554311 00000
Q ss_pred CC--CccCCCCC---CcHHHHHHHHHHHHHHc--CCc--eEEEehhhHhhhcCCCCChHh-HHHHHH-HHHhccceEEec
Q 008112 347 RG--DLGAELPI---EEVPLLQEEIIRTCRSM--GKA--VIVATNMLESMIVHPTPTRAE-VSDIAI-AVREGADAVMLS 415 (577)
Q Consensus 347 RG--DLg~elg~---e~v~~~qk~Ii~~c~~a--GKP--vi~ATq~LeSM~~~~~PtrAE-v~Dv~n-av~~G~D~imLs 415 (577)
-- |+-+.++. .+...+.++|-+.+... |+| ||+=|..| +..| +..+.. ++..|+|.|==|
T Consensus 97 AdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L---------~~ee~i~~a~~~a~~aGADFVKTS 167 (257)
T PRK05283 97 ADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGEL---------KDEALIRKASEIAIKAGADFIKTS 167 (257)
T ss_pred CCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEecccc---------CCHHHHHHHHHHHHHhCCCEEEcC
Confidence 00 11112221 14444444444443332 344 56655555 5554 655554 788899998654
Q ss_pred cccCCCCCH----HHHHHHHHHHHHH
Q 008112 416 GETAHGKFP----LKAVKVMHTVSLR 437 (577)
Q Consensus 416 ~ETa~G~yP----~eaV~~m~~I~~~ 437 (577)
.|..| .+.|+.|++.+++
T Consensus 168 ----TGf~~~gAt~edv~lm~~~i~~ 189 (257)
T PRK05283 168 ----TGKVPVNATLEAARIMLEVIRD 189 (257)
T ss_pred ----CCCCCCCCCHHHHHHHHHHHHh
Confidence 55543 6889999887765
No 307
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=55.26 E-value=76 Score=31.26 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 008112 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (577)
Q Consensus 304 v~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~AT 381 (577)
++.+++.+.+.|.++.+-+.-+... ++.++.+.-.|.|+.+..+ ...+..+-+.|+++|+|.+.+.
T Consensus 77 a~a~~~~L~~lNp~v~i~~~~~~~~--~~~~~~~~~~dvVi~~~~~----------~~~~~~ln~~c~~~~ip~i~~~ 142 (197)
T cd01492 77 AEASLERLRALNPRVKVSVDTDDIS--EKPEEFFSQFDVVVATELS----------RAELVKINELCRKLGVKFYATG 142 (197)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcc--ccHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 4556777888888887766555443 5567777788988876333 3566778889999999988653
No 308
>PRK06382 threonine dehydratase; Provisional
Probab=55.10 E-value=2.3e+02 Score=31.04 Aligned_cols=118 Identities=11% Similarity=0.063 Sum_probs=72.9
Q ss_pred HHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccCC
Q 008112 366 IIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGG 445 (577)
Q Consensus 366 Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~~ 445 (577)
+...|+..|.++.+.. |..+-...+...-..|++.+.. + ...-++.+...+++++-. .++..
T Consensus 88 ~A~aa~~~G~~~~ivm-----------p~~~~~~k~~~~~~~GA~Vv~~-~-----~~~~~a~~~a~~la~~~~-~~~v~ 149 (406)
T PRK06382 88 VAYAASINGIDAKIVM-----------PEYTIPQKVNAVEAYGAHVILT-G-----RDYDEAHRYADKIAMDEN-RTFIE 149 (406)
T ss_pred HHHHHHHcCCCEEEEE-----------cCCCHHHHHHHHHHcCCEEEEE-C-----CCHHHHHHHHHHHHHhcC-CEecC
Confidence 5678999999988742 3333233344566789987644 3 234567777666655422 22211
Q ss_pred CCCCCCCcccCCChhHHHHHHHHHHHhhcCc--eEEEEcCChHHHHHHHh----hCCCCeEEEEcCcHH
Q 008112 446 AMPPNLGQAFKNHMSEMFAYHATMMSNTLGT--SIVVFTRTGFMAILLSH----YRPSGTIFAFTNEKR 508 (577)
Q Consensus 446 ~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~a--aIiV~T~sG~tA~~is~----~RP~~PIIAvT~~~~ 508 (577)
.|.+ ....+....-+.++.++++. .||+..-+|.++.-+++ ..|.+.||++-+...
T Consensus 150 -~~~~------~~~i~g~~t~~~Ei~eq~~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~ 211 (406)
T PRK06382 150 -AFND------RWVISGQGTIGLEIMEDLPDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELS 211 (406)
T ss_pred -ccCC------hHHHHHHHHHHHHHHHhcCCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 1211 12233344456677777764 89999989987766554 489999999998643
No 309
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=54.99 E-value=32 Score=38.57 Aligned_cols=109 Identities=18% Similarity=0.156 Sum_probs=63.5
Q ss_pred ccCHHHHHHHHhcCCCEEEEcC------CCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHH---hcCEEEEc
Q 008112 276 EKDWDDIKFGVDNKVDFYAVSF------VKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT---ASDGAMVA 346 (577)
Q Consensus 276 ekD~~dI~~al~~gvD~I~~Sf------V~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~---~sDGImIa 346 (577)
-++.++++.+++.|++.|.+.. --+.+.-.++..++ -.++.+|+ |+ |+.+.+++.. .+||++||
T Consensus 166 vh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~i---p~~~~~vs--eS--GI~t~~d~~~~~~~~davLiG 238 (454)
T PRK09427 166 VSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLI---PADVIVIS--ES--GIYTHAQVRELSPFANGFLIG 238 (454)
T ss_pred ECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhC---CCCcEEEE--eC--CCCCHHHHHHHHhcCCEEEEC
Confidence 3678899999999999999874 22333344444444 24555555 33 5555444433 38999998
Q ss_pred CCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEe
Q 008112 347 RGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (577)
Q Consensus 347 RGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imL 414 (577)
-.-+..+=+ ...-++++. ..=|-|++ | ...|+..+...|+|++=+
T Consensus 239 ~~lm~~~d~----~~~~~~L~~---~~vKICGi--------------t--~~eda~~a~~~GaD~lGf 283 (454)
T PRK09427 239 SSLMAEDDL----ELAVRKLIL---GENKVCGL--------------T--RPQDAKAAYDAGAVYGGL 283 (454)
T ss_pred HHHcCCCCH----HHHHHHHhc---cccccCCC--------------C--CHHHHHHHHhCCCCEEee
Confidence 555443322 222233322 12244444 2 235677888889998765
No 310
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=54.98 E-value=21 Score=40.45 Aligned_cols=50 Identities=28% Similarity=0.443 Sum_probs=41.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHH
Q 008112 109 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (577)
Q Consensus 109 ~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 158 (577)
+-..=|.+|+.-+..|-.+.|+++|+|+.=++.+||......++++.||+
T Consensus 236 ~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~ 285 (505)
T PLN02274 236 KLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKK 285 (505)
T ss_pred CEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 34455578988788999999999999999999999988776677777775
No 311
>PRK00208 thiG thiazole synthase; Reviewed
Probab=54.78 E-value=2.2e+02 Score=29.66 Aligned_cols=73 Identities=27% Similarity=0.258 Sum_probs=50.9
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHH
Q 008112 354 LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 433 (577)
Q Consensus 354 lg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~ 433 (577)
.|+.. +...+.+.+. .+.|||+... .=|. +|++.++..|+|++++++=-+..+.|..-.+.+..
T Consensus 159 ~gi~~-~~~i~~i~e~---~~vpVIveaG---------I~tp---eda~~AmelGAdgVlV~SAItka~dP~~ma~af~~ 222 (250)
T PRK00208 159 LGLLN-PYNLRIIIEQ---ADVPVIVDAG---------IGTP---SDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKL 222 (250)
T ss_pred CCCCC-HHHHHHHHHh---cCCeEEEeCC---------CCCH---HHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHH
Confidence 44444 4444444443 4789997543 3333 56889999999999998777788889888888777
Q ss_pred HHHHHhccc
Q 008112 434 VSLRTEATI 442 (577)
Q Consensus 434 I~~~aE~~~ 442 (577)
-++.-...+
T Consensus 223 Av~aGr~a~ 231 (250)
T PRK00208 223 AVEAGRLAY 231 (250)
T ss_pred HHHHHHHHH
Confidence 766655443
No 312
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=54.72 E-value=1.9e+02 Score=29.15 Aligned_cols=125 Identities=14% Similarity=0.165 Sum_probs=75.8
Q ss_pred HHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHH---h-cCEEEEcCC-------C
Q 008112 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT---A-SDGAMVARG-------D 349 (577)
Q Consensus 281 dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~---~-sDGImIaRG-------D 349 (577)
+++.|++.++|+|-++. +-..+..+++.+. .+..|=. +..++++..+ . .|+|.+|+= |
T Consensus 73 ~~dlA~~~~AdGVHlGq--~D~~~~~ar~~~~---~~~iIG~------S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~ 141 (211)
T COG0352 73 RVDLALAVGADGVHLGQ--DDMPLAEARELLG---PGLIIGL------STHDLEEALEAEELGADYVGLGPIFPTSTKPD 141 (211)
T ss_pred cHHHHHhCCCCEEEcCC--cccchHHHHHhcC---CCCEEEe------ecCCHHHHHHHHhcCCCEEEECCcCCCCCCCC
Confidence 34567788999999994 4455677777663 2222222 3334444444 3 899999963 2
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHH
Q 008112 350 LGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVK 429 (577)
Q Consensus 350 Lg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~ 429 (577)
. --.|++.+ + +.++...+|++.-..+ .|.+ +......|+|+|-+........-|..+++
T Consensus 142 ~-~~~G~~~l---~----~~~~~~~iP~vAIGGi--------~~~n-----v~~v~~~Ga~gVAvvsai~~a~d~~~a~~ 200 (211)
T COG0352 142 A-PPLGLEGL---R----EIRELVNIPVVAIGGI--------NLEN-----VPEVLEAGADGVAVVSAITSAADPAAAAK 200 (211)
T ss_pred C-CccCHHHH---H----HHHHhCCCCEEEEcCC--------CHHH-----HHHHHHhCCCeEEehhHhhcCCCHHHHHH
Confidence 2 22222221 1 2333334997653322 2223 55778899999998777777888888888
Q ss_pred HHHHHHHH
Q 008112 430 VMHTVSLR 437 (577)
Q Consensus 430 ~m~~I~~~ 437 (577)
-+.+....
T Consensus 201 ~~~~~~~~ 208 (211)
T COG0352 201 ALRNALED 208 (211)
T ss_pred HHHHHHHh
Confidence 88776654
No 313
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=53.97 E-value=3e+02 Score=29.62 Aligned_cols=151 Identities=17% Similarity=0.149 Sum_probs=92.9
Q ss_pred ccCHHHHHHHHhcCC--CEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEee-cChhhHhhHHHHHHh--c--CEEEEcCC
Q 008112 276 EKDWDDIKFGVDNKV--DFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKI-ESADSIPNLHSIITA--S--DGAMVARG 348 (577)
Q Consensus 276 ekD~~dI~~al~~gv--D~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKI-Et~~gv~NldeIl~~--s--DGImIaRG 348 (577)
++|.+-|+.+++.-- .-++-| =+.+..+++-.+..+.|. .+++.- -..+....+-..+.. . +-|++.++
T Consensus 136 ~kD~evleaale~~~g~~pLInS--at~en~~~i~~lA~~y~~--~Vva~s~~Dln~ak~L~~~l~~~Gi~~edIviDP~ 211 (319)
T PRK04452 136 EKDAEVLEKVAEAAEGERCLLGS--AEEDNYKKIAAAAMAYGH--AVIAWSPLDINLAKQLNILLTELGVPRERIVMDPT 211 (319)
T ss_pred CCCHHHHHHHHHHhCCCCCEEEE--CCHHHHHHHHHHHHHhCC--eEEEEcHHHHHHHHHHHHHHHHcCCCHHHEEEeCC
Confidence 569999998887433 235555 346777777777655443 455542 223333333333332 2 45788888
Q ss_pred CccCCCCCCcHHHHHHHHHHHHHH----cCCceEEEehh-----hHhhh-------cCCCCChH---hHHHHHHHHHhcc
Q 008112 349 DLGAELPIEEVPLLQEEIIRTCRS----MGKAVIVATNM-----LESMI-------VHPTPTRA---EVSDIAIAVREGA 409 (577)
Q Consensus 349 DLg~elg~e~v~~~qk~Ii~~c~~----aGKPvi~ATq~-----LeSM~-------~~~~PtrA---Ev~Dv~nav~~G~ 409 (577)
=..+..+.+.....+.+|=..+-+ .|-|+|..+-. =|+.. ..+.-.|+ |+.-....+..|+
T Consensus 212 ~~~lg~g~e~~~~~~e~IR~aAl~~d~~l~~P~i~~~~~~~~~~kea~~~~~~~~~~g~~~~r~~~~E~~~a~~~~~~ga 291 (319)
T PRK04452 212 TGALGYGIEYSYSVMERIRLAALKGDEMLQMPMISGVGFEAWKAKEAWMPEEEDPEWGPREYRGILWEAVTALTLLLAGA 291 (319)
T ss_pred cccccCCHHHHHHHHHHHHHHHhcCCCcCCCCeEecchhhhhhccccccccccccccccchhccHHHHHHHHHHHHHhcC
Confidence 887777877777777776666654 56676643321 02211 00111123 6677777888999
Q ss_pred ceEEeccccCCCCCHHHHHHHHHHHHHHH
Q 008112 410 DAVMLSGETAHGKFPLKAVKVMHTVSLRT 438 (577)
Q Consensus 410 D~imLs~ETa~G~yP~eaV~~m~~I~~~a 438 (577)
|.++| +|| ++|+++++++...
T Consensus 292 ~i~vm-------~hp-~s~~~~~~~~~~l 312 (319)
T PRK04452 292 DIFMM-------RHP-ESVKTLKEIIDTL 312 (319)
T ss_pred cEEEE-------eCH-HHHHHHHHHHHHH
Confidence 99999 488 8999998887654
No 314
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=53.85 E-value=1.5e+02 Score=30.94 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=58.7
Q ss_pred HHHHHHHHhcC-CCEEEEc------CCCCHHHHHHHHH-HHHhcCCCceEEEeec---ChhhHhhHHHHHHh-cCEEEEc
Q 008112 279 WDDIKFGVDNK-VDFYAVS------FVKDAQVVHELKN-YLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVA 346 (577)
Q Consensus 279 ~~dI~~al~~g-vD~I~~S------fV~sa~dv~~lr~-~l~~~~~~i~IiaKIE---t~~gv~NldeIl~~-sDGImIa 346 (577)
.+.+++.++.| +|+|++. +-=|.++-.++.+ ..+..+.++.|++.+- |.++++-....-+. +|++|+.
T Consensus 24 ~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~ 103 (290)
T TIGR00683 24 RQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAV 103 (290)
T ss_pred HHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 34567888999 9999775 4445666555544 4455566789999885 44445444444444 8999997
Q ss_pred CCCccCCCCCCcHHHHHHHHHHHHHHc-CCceEEE
Q 008112 347 RGDLGAELPIEEVPLLQEEIIRTCRSM-GKAVIVA 380 (577)
Q Consensus 347 RGDLg~elg~e~v~~~qk~Ii~~c~~a-GKPvi~A 380 (577)
+-.+-- ...+++...-+.+ |.+. +.|+++.
T Consensus 104 ~P~y~~-~~~~~i~~yf~~v---~~~~~~lpv~lY 134 (290)
T TIGR00683 104 TPFYYK-FSFPEIKHYYDTI---IAETGGLNMIVY 134 (290)
T ss_pred CCcCCC-CCHHHHHHHHHHH---HhhCCCCCEEEE
Confidence 543311 1123344444444 3345 6898864
No 315
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.81 E-value=31 Score=36.30 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=49.4
Q ss_pred cCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhH--hhHHHHHHh-cCEEEEcC
Q 008112 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVAR 347 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-sDGImIaR 347 (577)
.+.+++..+++.|+|.|.+=.. ++++++++.+.+.. + .+||---|| +|+.++++. +|.|.+|.
T Consensus 201 ~slee~~ea~~~gaDiImLDn~-s~e~l~~av~~~~~---~----~~leaSGgI~~~ni~~yA~tGVD~Is~ga 266 (281)
T PRK06543 201 DRLDQIEPVLAAGVDTIMLDNF-SLDDLREGVELVDG---R----AIVEASGNVNLNTVGAIASTGVDVISVGA 266 (281)
T ss_pred CCHHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHhCC---C----eEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 4678888899999999999885 88899998887742 2 256665554 488888887 99999984
No 316
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=53.78 E-value=88 Score=34.16 Aligned_cols=94 Identities=21% Similarity=0.297 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceE
Q 008112 300 DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVI 378 (577)
Q Consensus 300 sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi 378 (577)
+-++++++++.. +.++|.| +- .-.++....++. +|||.|+=.- |-. ++..+..-..+.+.+...+.|+|
T Consensus 224 ~w~~i~~ir~~~-----~~pviiK-gV-~~~eda~~a~~~G~d~I~VSnhG-Grq--ld~~~~~~~~L~ei~~~~~~~vi 293 (361)
T cd04736 224 NWQDLRWLRDLW-----PHKLLVK-GI-VTAEDAKRCIELGADGVILSNHG-GRQ--LDDAIAPIEALAEIVAATYKPVL 293 (361)
T ss_pred CHHHHHHHHHhC-----CCCEEEe-cC-CCHHHHHHHHHCCcCEEEECCCC-cCC--CcCCccHHHHHHHHHHHhCCeEE
Confidence 456888888755 3356665 21 233333333333 8899886100 111 11111112222233334468988
Q ss_pred EEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 379 VATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 379 ~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
....+= --.||..|+..|+|++|+.
T Consensus 294 ~dGGIr------------~g~Dv~KALaLGA~aV~iG 318 (361)
T cd04736 294 IDSGIR------------RGSDIVKALALGANAVLLG 318 (361)
T ss_pred EeCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 754322 2478999999999999984
No 317
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=53.74 E-value=25 Score=37.72 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=41.3
Q ss_pred EEEEecCCCCCCHHHHHHHHHhC--CcEEEEeccCCChHHHHHHHHHHHH
Q 008112 111 KIVCTIGPSTNTREMIWKLAEAG--MNVARLNMSHGDHASHQKVIDLVKE 158 (577)
Q Consensus 111 KIi~TiGPs~~~~e~l~~li~~G--m~v~RiN~sHg~~e~~~~~i~~ir~ 158 (577)
-..+++|-..++.|.+..|+++| .|+.=+..|||..+...++++.+|+
T Consensus 84 ~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~ 133 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKT 133 (321)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHH
Confidence 46777888888889999999999 6999999999998877777777775
No 318
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=53.51 E-value=2.7e+02 Score=28.89 Aligned_cols=122 Identities=13% Similarity=0.047 Sum_probs=69.2
Q ss_pred HHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCH-HHHHHHHHHHHHHHhcccc
Q 008112 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP-LKAVKVMHTVSLRTEATIT 443 (577)
Q Consensus 365 ~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP-~eaV~~m~~I~~~aE~~~~ 443 (577)
-+...|+.+|.|+.+.. |....-..+...-..|++.+..- |.|. .++++...++..+-...+.
T Consensus 71 alA~~a~~~Gl~~~i~v-----------p~~~~~~k~~~~~~~GA~v~~~~-----~~~~~~~~~~~a~~~~~~~~~~~~ 134 (298)
T TIGR01139 71 ALAMVAAARGYKLILTM-----------PETMSIERRKLLKAYGAELVLTP-----GAEGMKGAIAKAEEIAASTPNSYF 134 (298)
T ss_pred HHHHHHHHcCCeEEEEe-----------CCccCHHHHHHHHHcCCEEEEEC-----CCCCHHHHHHHHHHHHHhCCCcEE
Confidence 34568899999987742 33322233555667999988764 3443 4566655555433211111
Q ss_pred CCCCCCCCCcccCCChhHHHHHHHHHHHhhcC--c-eEEEEcCChHHHHHH----HhhCCCCeEEEEcCcH
Q 008112 444 GGAMPPNLGQAFKNHMSEMFAYHATMMSNTLG--T-SIVVFTRTGFMAILL----SHYRPSGTIFAFTNEK 507 (577)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~--a-aIiV~T~sG~tA~~i----s~~RP~~PIIAvT~~~ 507 (577)
+...+.+ .. .+..-...-+.++.++++ . .||+.+-+|.++--+ ..++|...||++-+..
T Consensus 135 ~~~~~~n----~~-~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~ 200 (298)
T TIGR01139 135 MLQQFEN----PA-NPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAE 200 (298)
T ss_pred cccccCC----cc-cHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCC
Confidence 1111111 00 011112223446666664 4 899999999776544 4556999999999864
No 319
>PRK08185 hypothetical protein; Provisional
Probab=53.50 E-value=3e+02 Score=29.08 Aligned_cols=119 Identities=17% Similarity=0.275 Sum_probs=78.7
Q ss_pred CCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCC--C
Q 008112 316 ADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHP--T 392 (577)
Q Consensus 316 ~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~--~ 392 (577)
..+++...+....-++.+..-+.. .+.||+.-- ++|+++-...-+++++.|+++|.++=.-=..+-.=.... .
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S----~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~ 142 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGS----LLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGG 142 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCC----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccc
Confidence 468899999888766666655555 678999744 458888888889999999999999722111110000000 0
Q ss_pred CC---hHhHHHHHHHHHh-ccceEEeccccCCCCCHH-----HHHHHHHHHHHHH
Q 008112 393 PT---RAEVSDIAIAVRE-GADAVMLSGETAHGKFPL-----KAVKVMHTVSLRT 438 (577)
Q Consensus 393 Pt---rAEv~Dv~nav~~-G~D~imLs~ETa~G~yP~-----eaV~~m~~I~~~a 438 (577)
.+ .....++..++.. |+|++-.|--|+.|.||- --...+.+|.+..
T Consensus 143 ~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~ 197 (283)
T PRK08185 143 VSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV 197 (283)
T ss_pred cccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh
Confidence 00 1123445678877 999999999999999964 2355666665543
No 320
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=53.42 E-value=28 Score=30.02 Aligned_cols=43 Identities=23% Similarity=0.423 Sum_probs=34.0
Q ss_pred ccccccccCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEec
Q 008112 214 YDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELK 257 (577)
Q Consensus 214 ~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~v~~~v~~gG~l~ 257 (577)
+.++.+.+++||.|..-.|.+ -+|.+++++.+..++..|..++
T Consensus 31 ~~~m~~~L~~Gd~VvT~gGi~-G~V~~i~d~~v~vei~~g~~i~ 73 (84)
T TIGR00739 31 HKKLIESLKKGDKVLTIGGII-GTVTKIAENTIVIELNDNTEIT 73 (84)
T ss_pred HHHHHHhCCCCCEEEECCCeE-EEEEEEeCCEEEEEECCCeEEE
Confidence 357888999999999988755 5677899998888876666655
No 321
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=53.29 E-value=2.7e+02 Score=30.90 Aligned_cols=157 Identities=18% Similarity=0.236 Sum_probs=98.6
Q ss_pred CCccCHHHHHHHH-hcCCCEEEEcCCCCHHHHHHHHHHHH-hcCCCceEEEeecCh-hhHh-hHHHHHHh-cC--EEEEc
Q 008112 274 ITEKDWDDIKFGV-DNKVDFYAVSFVKDAQVVHELKNYLK-SCGADIHVIVKIESA-DSIP-NLHSIITA-SD--GAMVA 346 (577)
Q Consensus 274 ltekD~~dI~~al-~~gvD~I~~SfV~sa~dv~~lr~~l~-~~~~~i~IiaKIEt~-~gv~-NldeIl~~-sD--GImIa 346 (577)
+|-+|+..|...| +.|+|+|=+.|-.+.+...+..+.+. ..+. .+.+++-.. ..++ .++.++.. .| .++++
T Consensus 21 ~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~ea~~~a~~~~i~if~~ 98 (409)
T COG0119 21 FSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGL--FICALIAALARAIKRDIEALLEAGVDRIHIFIA 98 (409)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcCc--ccchhhhhhHHhHHhhHHHHHhCCCCEEEEEEc
Confidence 4566777776666 58999997766654444444444443 2222 223333221 1222 55666655 66 58888
Q ss_pred CCCccCCCCC----CcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHH-hccceEEeccccCCC
Q 008112 347 RGDLGAELPI----EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVR-EGADAVMLSGETAHG 421 (577)
Q Consensus 347 RGDLg~elg~----e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~-~G~D~imLs~ETa~G 421 (577)
-.|+-++..+ +++...-+..++.++.+|.++...- |.+. +-...-+.+++.++. .|++.|-| .+|-=+
T Consensus 99 tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~---Ed~~---rt~~~~l~~~~~~~~~~ga~~i~l-~DTvG~ 171 (409)
T COG0119 99 TSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSA---EDAT---RTDPEFLAEVVKAAIEAGADRINL-PDTVGV 171 (409)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEe---eccc---cCCHHHHHHHHHHHHHcCCcEEEE-CCCcCc
Confidence 7877665543 4677777889999999998877522 2211 223333445555444 55999999 589888
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 008112 422 KFPLKAVKVMHTVSLRTE 439 (577)
Q Consensus 422 ~yP~eaV~~m~~I~~~aE 439 (577)
-.|.+.-..+..+....-
T Consensus 172 ~~P~~~~~~i~~l~~~v~ 189 (409)
T COG0119 172 ATPNEVADIIEALKANVP 189 (409)
T ss_pred cCHHHHHHHHHHHHHhCC
Confidence 999999888888887764
No 322
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=53.11 E-value=77 Score=32.31 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 008112 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (577)
Q Consensus 304 v~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~AT 381 (577)
+..+++.+.+.|.++.|-+--+..+. +|+++++...|.|+-+-. -+..+..+-+.|+++++|++.+.
T Consensus 80 a~~a~~~l~~inp~v~i~~~~~~i~~-~~~~~~~~~~DlVvd~~D----------~~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 80 VESAKDALTQINPHIAINPINAKLDD-AELAALIAEHDIVVDCTD----------NVEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCH-HHHHHHhhcCCEEEEcCC----------CHHHHHHHHHHHHHcCCCEEEEE
Confidence 45556677777888777665444433 578888888998887621 23567778899999999999764
No 323
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=53.07 E-value=1.6e+02 Score=31.12 Aligned_cols=120 Identities=16% Similarity=0.220 Sum_probs=74.5
Q ss_pred CCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEE-ehh--hHhh-hc
Q 008112 315 GADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA-TNM--LESM-IV 389 (577)
Q Consensus 315 ~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A-Tq~--LeSM-~~ 389 (577)
+..+++...+.....++.+.+=++. .+-||+. |-.+|+++=...-+++++.|+..|.+|=.= -++ -|.- ..
T Consensus 75 ~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD----gS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~ 150 (288)
T TIGR00167 75 PYGVPVALHLDHGASEEDCAQAVKAGFSSVMID----GSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSV 150 (288)
T ss_pred cCCCcEEEECCCCCCHHHHHHHHHcCCCEEEec----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccc
Confidence 3377888888887754444333333 5689997 445788877788899999999999987210 011 0000 00
Q ss_pred CC-CCChHhHHHHHHHHHh-ccceEEeccccCCCCCH---H-HHHHHHHHHHHHH
Q 008112 390 HP-TPTRAEVSDIAIAVRE-GADAVMLSGETAHGKFP---L-KAVKVMHTVSLRT 438 (577)
Q Consensus 390 ~~-~PtrAEv~Dv~nav~~-G~D~imLs~ETa~G~yP---~-eaV~~m~~I~~~a 438 (577)
.. .-......++..++.. |+|++..+-=|+.|.|+ . --...+.+|.+..
T Consensus 151 ~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v 205 (288)
T TIGR00167 151 ADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYV 205 (288)
T ss_pred ccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHh
Confidence 00 0001122356677764 99999999999999995 3 3445555554444
No 324
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=52.95 E-value=70 Score=33.01 Aligned_cols=85 Identities=26% Similarity=0.277 Sum_probs=54.0
Q ss_pred cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccC
Q 008112 340 SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETA 419 (577)
Q Consensus 340 sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa 419 (577)
+..+|---.-.|.-.|+.. +...+.|++ +...|||+-.. .-+. +|++.|++.|+|+|+++.--|
T Consensus 145 caavMPlgsPIGSg~Gi~n-~~~l~~i~~---~~~vPvIvDAG---------iG~p---Sdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 145 CAAVMPLGSPIGSGRGIQN-PYNLRIIIE---RADVPVIVDAG---------IGTP---SDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp -SEBEEBSSSTTT---SST-HHHHHHHHH---HGSSSBEEES------------SH---HHHHHHHHTT-SEEEESHHHH
T ss_pred CCEEEecccccccCcCCCC-HHHHHHHHH---hcCCcEEEeCC---------CCCH---HHHHHHHHcCCceeehhhHHh
Confidence 4567764444444555544 344444443 44999998543 3333 668999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc
Q 008112 420 HGKFPLKAVKVMHTVSLRTEA 440 (577)
Q Consensus 420 ~G~yP~eaV~~m~~I~~~aE~ 440 (577)
..+.|+.-.+-|+.-++.-..
T Consensus 209 ~A~dPv~MA~Af~~AV~AGR~ 229 (247)
T PF05690_consen 209 KAKDPVAMARAFKLAVEAGRL 229 (247)
T ss_dssp TSSSHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 999998888877765554443
No 325
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=52.83 E-value=1e+02 Score=33.89 Aligned_cols=93 Identities=22% Similarity=0.296 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEe-ecChhhHhhHHHHHHh-cCEEEEcCCCccCCC--CCCcHHHHHHHHHHHHHHcCC
Q 008112 300 DAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITA-SDGAMVARGDLGAEL--PIEEVPLLQEEIIRTCRSMGK 375 (577)
Q Consensus 300 sa~dv~~lr~~l~~~~~~i~IiaK-IEt~~gv~NldeIl~~-sDGImIaRGDLg~el--g~e~v~~~qk~Ii~~c~~aGK 375 (577)
+-+++.++++.. +.+++.| |- ..+.....++. +|+|+|.-.- |-.+ +.. -..+-.+|..++. -.+
T Consensus 241 tW~~i~~lr~~~-----~~pvivKgV~---~~~dA~~a~~~G~d~I~vsnhG-Gr~~d~~~~-t~~~L~ei~~~~~-~~~ 309 (383)
T cd03332 241 TWEDLAFLREWT-----DLPIVLKGIL---HPDDARRAVEAGVDGVVVSNHG-GRQVDGSIA-ALDALPEIVEAVG-DRL 309 (383)
T ss_pred CHHHHHHHHHhc-----CCCEEEecCC---CHHHHHHHHHCCCCEEEEcCCC-CcCCCCCcC-HHHHHHHHHHHhc-CCC
Confidence 557777777744 4667777 32 22333333333 8888886110 1111 111 1112222222221 248
Q ss_pred ceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 376 AVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 376 Pvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
|++.+..+- .-.||+.|+..|+|++++.
T Consensus 310 ~vi~dGGIr------------~G~Dv~KALaLGA~~v~iG 337 (383)
T cd03332 310 TVLFDSGVR------------TGADIMKALALGAKAVLIG 337 (383)
T ss_pred eEEEeCCcC------------cHHHHHHHHHcCCCEEEEc
Confidence 988876544 3578999999999999984
No 326
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=52.81 E-value=26 Score=34.93 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHh
Q 008112 121 NTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQ 162 (577)
Q Consensus 121 ~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~ 162 (577)
+-.+.|.+|.++|++.|||.+-.-+.++..++++.-|++-..
T Consensus 157 ~l~~~l~~L~~~Gv~~~rI~~r~~~~~~~~~iv~~Y~~~l~~ 198 (233)
T PF01136_consen 157 CLLDELPELKDAGVDSFRIDGRTESPEYIEEIVKAYREALDN 198 (233)
T ss_pred hHHHHHHHHHHcCCCEEEEcCccCCHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999987543
No 327
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=52.76 E-value=2.5e+02 Score=28.01 Aligned_cols=127 Identities=19% Similarity=0.269 Sum_probs=65.9
Q ss_pred cCHHHHHHHHhcCCCEEEEcC--CCCHHHHHHHHHHHHhcCCCceEEEeecCh---------------hhHhhHHHHHHh
Q 008112 277 KDWDDIKFGVDNKVDFYAVSF--VKDAQVVHELKNYLKSCGADIHVIVKIESA---------------DSIPNLHSIITA 339 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~Sf--V~sa~dv~~lr~~l~~~~~~i~IiaKIEt~---------------~gv~NldeIl~~ 339 (577)
.+.++++.+++.|+|.|.+.- .++++-+.++.+.+ +.+ .|+.-|... .-++-...+...
T Consensus 86 ~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~---g~~-~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~ 161 (241)
T PRK13585 86 RSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEF---GSE-RVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEEL 161 (241)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHh---CCC-cEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHc
Confidence 577889999999999987764 22333444444433 332 122222210 112222222222
Q ss_pred -cCEEEEcCCCc-cCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccc
Q 008112 340 -SDGAMVARGDL-GAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGE 417 (577)
Q Consensus 340 -sDGImIaRGDL-g~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~E 417 (577)
+|.|.+---+- |..-+ ..+. .+-+.++....|++.+..+- +.. |+..+...|+|++++..-
T Consensus 162 G~~~i~~~~~~~~g~~~g-~~~~----~i~~i~~~~~iPvia~GGI~---------~~~---di~~~~~~Ga~gv~vgsa 224 (241)
T PRK13585 162 GAGSILFTNVDVEGLLEG-VNTE----PVKELVDSVDIPVIASGGVT---------TLD---DLRALKEAGAAGVVVGSA 224 (241)
T ss_pred CCCEEEEEeecCCCCcCC-CCHH----HHHHHHHhCCCCEEEeCCCC---------CHH---HHHHHHHcCCCEEEEEHH
Confidence 67777631111 11111 1221 23333455679999876543 333 455566789999999755
Q ss_pred cCCCCCH
Q 008112 418 TAHGKFP 424 (577)
Q Consensus 418 Ta~G~yP 424 (577)
--.|.++
T Consensus 225 ~~~~~~~ 231 (241)
T PRK13585 225 LYKGKFT 231 (241)
T ss_pred HhcCCcC
Confidence 5555554
No 328
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=52.73 E-value=3.3e+02 Score=29.50 Aligned_cols=85 Identities=24% Similarity=0.300 Sum_probs=57.3
Q ss_pred EEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCC
Q 008112 342 GAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 421 (577)
Q Consensus 342 GImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G 421 (577)
.+|--....|.-.|+. =|+..+.+++. ...||++... .-+. +|++.|+..|+|+++++.=-+..
T Consensus 221 avmPl~~pIGsg~gv~-~p~~i~~~~e~---~~vpVivdAG---------Ig~~---sda~~AmelGadgVL~nSaIa~a 284 (326)
T PRK11840 221 AVMPLGAPIGSGLGIQ-NPYTIRLIVEG---ATVPVLVDAG---------VGTA---SDAAVAMELGCDGVLMNTAIAEA 284 (326)
T ss_pred EEeeccccccCCCCCC-CHHHHHHHHHc---CCCcEEEeCC---------CCCH---HHHHHHHHcCCCEEEEcceeccC
Confidence 4444344456556655 34455555544 5789987543 3333 67999999999999999888999
Q ss_pred CCHHHHHHHHHHHHHHHhccc
Q 008112 422 KFPLKAVKVMHTVSLRTEATI 442 (577)
Q Consensus 422 ~yP~eaV~~m~~I~~~aE~~~ 442 (577)
+.|+.--+.|+.-.+.-...+
T Consensus 285 ~dPv~Ma~A~~~av~aGr~a~ 305 (326)
T PRK11840 285 KNPVLMARAMKLAVEAGRLAY 305 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 999887777766555544443
No 329
>PRK09224 threonine dehydratase; Reviewed
Probab=52.53 E-value=2.4e+02 Score=32.07 Aligned_cols=119 Identities=10% Similarity=0.033 Sum_probs=71.0
Q ss_pred HHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhcccc
Q 008112 364 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATIT 443 (577)
Q Consensus 364 k~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~ 443 (577)
.-+...|+..|.|+.+-- |..+.-..+...-..|++.++.. ...-++.+...+++++ +...+
T Consensus 81 ~avA~aa~~lGi~~~Ivm-----------P~~tp~~K~~~~r~~GA~Vi~~g------~~~~~a~~~a~~l~~~-~g~~~ 142 (504)
T PRK09224 81 QGVALSAARLGIKAVIVM-----------PVTTPDIKVDAVRAFGGEVVLHG------DSFDEAYAHAIELAEE-EGLTF 142 (504)
T ss_pred HHHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHhCCCEEEEEC------CCHHHHHHHHHHHHHh-cCCEE
Confidence 356678999999987632 22222233455667899877663 2345777776666554 22222
Q ss_pred CCCCCCCCCcccCCChhHHHHHHHHHHHhhcC--c-eEEEEcCChHHHHH----HHhhCCCCeEEEEcCcH
Q 008112 444 GGAMPPNLGQAFKNHMSEMFAYHATMMSNTLG--T-SIVVFTRTGFMAIL----LSHYRPSGTIFAFTNEK 507 (577)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~--a-aIiV~T~sG~tA~~----is~~RP~~PIIAvT~~~ 507 (577)
.. .|.+ ......-..-+.++.++++ . .||+..-+|.++-- +..++|...||++-+..
T Consensus 143 v~-~f~~------~~~i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~ 206 (504)
T PRK09224 143 IH-PFDD------PDVIAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPED 206 (504)
T ss_pred eC-CCCC------cHHHHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 11 1211 0122222333466777764 4 88998888866544 55678999999999753
No 330
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=52.34 E-value=3e+02 Score=28.77 Aligned_cols=146 Identities=15% Similarity=0.137 Sum_probs=84.6
Q ss_pred CCCCccCHHHHHHHHhcCCCEEEEcCC-------------CCHHHHHHHHHHHHhcCCCceEEEeec------Ch-hhHh
Q 008112 272 PSITEKDWDDIKFGVDNKVDFYAVSFV-------------KDAQVVHELKNYLKSCGADIHVIVKIE------SA-DSIP 331 (577)
Q Consensus 272 p~ltekD~~dI~~al~~gvD~I~~SfV-------------~sa~dv~~lr~~l~~~~~~i~IiaKIE------t~-~gv~ 331 (577)
-.+|-+|.---+.+-+.|+|.|.+..- =+.+++...-+.+...-....|++=++ ++ ++++
T Consensus 18 ~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~ 97 (264)
T PRK00311 18 VMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALR 97 (264)
T ss_pred EEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHH
Confidence 344788888888888999999976411 122233222233333333445888775 22 3578
Q ss_pred hHHHHHH-h-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceE----EEehhhHh---hhcCCCCChH---h-H
Q 008112 332 NLHSIIT-A-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVI----VATNMLES---MIVHPTPTRA---E-V 398 (577)
Q Consensus 332 NldeIl~-~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi----~ATq~LeS---M~~~~~PtrA---E-v 398 (577)
|.-.+++ . ++||.+-=| ..+...|+++.++|+||+ +--|--.. +.... -|.+ | +
T Consensus 98 ~a~r~~~~aGa~aVkiEdg------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~g-rt~~~a~~~i 164 (264)
T PRK00311 98 NAGRLMKEAGAHAVKLEGG------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQG-RDEEAAEKLL 164 (264)
T ss_pred HHHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeec-CCHHHHHHHH
Confidence 8888887 4 889998643 245677888889999996 22221111 11111 1222 2 3
Q ss_pred HHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHh
Q 008112 399 SDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTE 439 (577)
Q Consensus 399 ~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE 439 (577)
.|.-.....|+|++.|- |- |. +.+..|+++..
T Consensus 165 ~ra~a~~eAGA~~i~lE-----~v-~~---~~~~~i~~~l~ 196 (264)
T PRK00311 165 EDAKALEEAGAFALVLE-----CV-PA---ELAKEITEALS 196 (264)
T ss_pred HHHHHHHHCCCCEEEEc-----CC-CH---HHHHHHHHhCC
Confidence 44444668899999993 22 33 35556666554
No 331
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=51.89 E-value=2.6e+02 Score=27.93 Aligned_cols=126 Identities=7% Similarity=0.033 Sum_probs=72.7
Q ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEEEEcCCCccCC----
Q 008112 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARGDLGAE---- 353 (577)
Q Consensus 282 I~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGImIaRGDLg~e---- 353 (577)
...+.+.|+|+|-++. +--.+..+++.+ +.+..|=+ +..|++++..+ +|.+++|+- +...
T Consensus 72 ~~lA~~~~adGVHlg~--~d~~~~~~r~~~---~~~~~iG~------S~H~~~e~~~A~~~gaDYi~lgpv-f~T~tK~~ 139 (211)
T PRK03512 72 WRLAIKHQAYGVHLGQ--EDLETADLNAIR---AAGLRLGV------STHDDMEIDVALAARPSYIALGHV-FPTQTKQM 139 (211)
T ss_pred HHHHHHcCCCEEEcCh--HhCCHHHHHHhc---CCCCEEEE------eCCCHHHHHHHhhcCCCEEEECCc-cCCCCCCC
Confidence 4556778899998873 211234455443 33332333 23455554432 799999974 2111
Q ss_pred -CCCCcHHHHHHHHHHHHHH-cCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHH
Q 008112 354 -LPIEEVPLLQEEIIRTCRS-MGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 431 (577)
Q Consensus 354 -lg~e~v~~~qk~Ii~~c~~-aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m 431 (577)
.+...+..+++ .++. ..+||+---.+- ..++......|++++-+.+.-..-.-|.++++.+
T Consensus 140 ~~~~~G~~~l~~----~~~~~~~~PV~AiGGI~-------------~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l 202 (211)
T PRK03512 140 PSAPQGLAQLAR----HVERLADYPTVAIGGIS-------------LERAPAVLATGVGSIAVVSAITQAADWRAATAQL 202 (211)
T ss_pred CCCCCCHHHHHH----HHHhcCCCCEEEECCCC-------------HHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHH
Confidence 11112222322 2233 368987543321 2346667788999999988877777899999977
Q ss_pred HHHHH
Q 008112 432 HTVSL 436 (577)
Q Consensus 432 ~~I~~ 436 (577)
.++..
T Consensus 203 ~~~~~ 207 (211)
T PRK03512 203 LELAE 207 (211)
T ss_pred HHHHh
Confidence 76543
No 332
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=51.72 E-value=3.2e+02 Score=28.88 Aligned_cols=155 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcC------------------------------CCceEEEeecChh
Q 008112 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCG------------------------------ADIHVIVKIESAD 328 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~------------------------------~~i~IiaKIEt~~ 328 (577)
.+.++.|.+.+. .|..-.+.+.+.++.+.+...+.+ ..+++...+....
T Consensus 7 ~~~l~~A~~~~y-aV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH~~ 85 (284)
T PRK12737 7 KNMLKKAQAEGY-AVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDHHE 85 (284)
T ss_pred HHHHHHHHHcCc-eEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_pred hHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCce---EEEehhhHhhhcCCCCC--hHhHHHHH
Q 008112 329 SIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAV---IVATNMLESMIVHPTPT--RAEVSDIA 402 (577)
Q Consensus 329 gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPv---i~ATq~LeSM~~~~~Pt--rAEv~Dv~ 402 (577)
-++.+..=+.. .+-||+. |-.+|+++=-..-+++++.|++.|..| +-.-.--|.-+....-. .....++.
T Consensus 86 ~~e~i~~ai~~GftSVMiD----gS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~ 161 (284)
T PRK12737 86 DLDDIKKKVRAGIRSVMID----GSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAA 161 (284)
T ss_pred CHHHHHHHHHcCCCeEEec----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHH
Q ss_pred HHHH-hccceEEeccccCCCCC---HHHHHHHHHHHHHHH
Q 008112 403 IAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVSLRT 438 (577)
Q Consensus 403 nav~-~G~D~imLs~ETa~G~y---P~eaV~~m~~I~~~a 438 (577)
.++. -|+|++..+-=|+.|.| |---...+.+|....
T Consensus 162 ~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~ 201 (284)
T PRK12737 162 EFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKV 201 (284)
T ss_pred HHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh
No 333
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=51.59 E-value=3e+02 Score=28.57 Aligned_cols=141 Identities=15% Similarity=0.208 Sum_probs=80.1
Q ss_pred ceeeeCCCCCCCCC-CCccCHHHHHHHHhcCCCEEEE---------------------cCCCCH----HHHHHHHHHHHh
Q 008112 260 RHLNVRGKSATLPS-ITEKDWDDIKFGVDNKVDFYAV---------------------SFVKDA----QVVHELKNYLKS 313 (577)
Q Consensus 260 Kginlp~~~~~lp~-ltekD~~dI~~al~~gvD~I~~---------------------SfV~sa----~dv~~lr~~l~~ 313 (577)
+|+.|++-- -+++ +..+..+.+++..+.|++++.. .++++- ..++...+.+..
T Consensus 6 ~g~~l~npi-~~aag~~~~~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~ 84 (300)
T TIGR01037 6 FGIRFKNPL-ILASGIMGSGVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKP 84 (300)
T ss_pred CCEECCCCC-EeCCcCCCCCHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHH
Confidence 456666543 3333 3345667777777889998887 111110 012222222221
Q ss_pred --cCCCceEEEee--cChhhHhhHHHHHHh----cCEEEEcCCCccCCCCC--------CcHHHHHHHHHHHHHHc-CCc
Q 008112 314 --CGADIHVIVKI--ESADSIPNLHSIITA----SDGAMVARGDLGAELPI--------EEVPLLQEEIIRTCRSM-GKA 376 (577)
Q Consensus 314 --~~~~i~IiaKI--Et~~gv~NldeIl~~----sDGImIaRGDLg~elg~--------e~v~~~qk~Ii~~c~~a-GKP 376 (577)
...+.+++++| .+++.+...-++++. +|+|=+. +.+|. ..-+..-.+|+++.+++ ++|
T Consensus 85 ~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN-----~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~p 159 (300)
T TIGR01037 85 VREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELN-----LSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVP 159 (300)
T ss_pred HhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEE-----CCCCCCCCCccccccCHHHHHHHHHHHHHhcCCC
Confidence 12246799998 555555555555552 6776653 22221 12345557788887765 889
Q ss_pred eEEEehhhHhhhcCCCCChHhHHHHHH-HHHhccceEEecc
Q 008112 377 VIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSG 416 (577)
Q Consensus 377 vi~ATq~LeSM~~~~~PtrAEv~Dv~n-av~~G~D~imLs~ 416 (577)
+.+=. .|+-.+..+++. +...|+|++.+++
T Consensus 160 v~vKi----------~~~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 160 VFAKL----------SPNVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred EEEEC----------CCChhhHHHHHHHHHHcCCCEEEEEc
Confidence 88632 245556667776 5568999999874
No 334
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=51.37 E-value=3e+02 Score=28.48 Aligned_cols=89 Identities=22% Similarity=0.306 Sum_probs=53.5
Q ss_pred CCceEEEee--cChhhHhhHHHHHHh--cCEEEEcCC-----CccCCCCCCcHHHHHHHHHHHHHHc-CCceEEEehhhH
Q 008112 316 ADIHVIVKI--ESADSIPNLHSIITA--SDGAMVARG-----DLGAELPIEEVPLLQEEIIRTCRSM-GKAVIVATNMLE 385 (577)
Q Consensus 316 ~~i~IiaKI--Et~~gv~NldeIl~~--sDGImIaRG-----DLg~elg~e~v~~~qk~Ii~~c~~a-GKPvi~ATq~Le 385 (577)
.+.++++.| .+.+...+.-..++. .|+|=+-=+ ..|.+++ .-+..-.+++++++++ ++|+++=
T Consensus 88 ~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vK----- 160 (296)
T cd04740 88 FGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVK----- 160 (296)
T ss_pred CCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEE-----
Confidence 356788887 444444444444433 688866300 0011222 2245667788888887 8998862
Q ss_pred hhhcCCCCChHhHHHHHH-HHHhccceEEecc
Q 008112 386 SMIVHPTPTRAEVSDIAI-AVREGADAVMLSG 416 (577)
Q Consensus 386 SM~~~~~PtrAEv~Dv~n-av~~G~D~imLs~ 416 (577)
-.|+..|..+++. +...|+|++.+.+
T Consensus 161 -----l~~~~~~~~~~a~~~~~~G~d~i~~~n 187 (296)
T cd04740 161 -----LTPNVTDIVEIARAAEEAGADGLTLIN 187 (296)
T ss_pred -----eCCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 1355557777776 5568999998864
No 335
>PRK08638 threonine dehydratase; Validated
Probab=51.19 E-value=2.5e+02 Score=29.97 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=73.2
Q ss_pred HHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhcccc
Q 008112 364 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATIT 443 (577)
Q Consensus 364 k~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~ 443 (577)
.-+...|+..|.|+++.. |...--..+...-..|++.+... ....++++...+++++-. .++
T Consensus 88 ~alA~~aa~~G~~~~iv~-----------p~~~~~~k~~~~~~~GA~V~~~~------~~~~~~~~~a~~~a~~~g-~~~ 149 (333)
T PRK08638 88 QGVALSCALLGIDGKVVM-----------PKGAPKSKVAATCGYGAEVVLHG------DNFNDTIAKVEEIVEEEG-RTF 149 (333)
T ss_pred HHHHHHHHHcCCCEEEEe-----------CCCCcHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHhcC-CEE
Confidence 345568999999998742 33322334555667899988752 234578887777776532 222
Q ss_pred CCCCCCCCCcccCCChhHHHHHHHHHHHhhcC-c-eEEEEcCChHHHHHHHhh----CCCCeEEEEcCcH
Q 008112 444 GGAMPPNLGQAFKNHMSEMFAYHATMMSNTLG-T-SIVVFTRTGFMAILLSHY----RPSGTIFAFTNEK 507 (577)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~-a-aIiV~T~sG~tA~~is~~----RP~~PIIAvT~~~ 507 (577)
..+ |.+ +. ..+....-+.++.++++ . .||+..-+|.+..-++++ .|...||++=|..
T Consensus 150 ~~~-~~~---~~---~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g 212 (333)
T PRK08638 150 IPP-YDD---PK---VIAGQGTIGLEILEDLWDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSEN 212 (333)
T ss_pred cCc-CCC---cc---hhccccHHHHHHHhhcCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 111 211 11 11122223445556553 4 889999999988777765 7999999998854
No 336
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=51.16 E-value=68 Score=32.74 Aligned_cols=86 Identities=16% Similarity=0.021 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCH-----HHHHHHHHHHHhcCCCceEEEeecChhhHhhHH---HHHHh--cCEEEEcCC
Q 008112 279 WDDIKFGVDNKVDFYAVSFVKDA-----QVVHELKNYLKSCGADIHVIVKIESADSIPNLH---SIITA--SDGAMVARG 348 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~sa-----~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~Nld---eIl~~--sDGImIaRG 348 (577)
.+.++...+.|+|+|.++-+.+- -+...+++..+. .++++|+- -|+.+.+ ++++. +||+|+|+.
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~--~~ipvia~----GGi~s~~di~~~~~~g~~dgv~~g~a 231 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEA--VKIPVIAS----GGAGKPEHFYEAFTKGKADAALAASV 231 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHh--CCCCEEEe----CCCCCHHHHHHHHHcCCcceeeEhHH
Confidence 45556777899999988766541 123444443332 24666662 2344443 44432 899999988
Q ss_pred CccCCCCCCcHHHHHHHHHHHHHHcCCce
Q 008112 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAV 377 (577)
Q Consensus 349 DLg~elg~e~v~~~qk~Ii~~c~~aGKPv 377 (577)
...-++++ +++.+.|+++|.|+
T Consensus 232 ~~~~~~~~-------~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 232 FHYREITI-------GEVKEYLAERGIPV 253 (254)
T ss_pred HhCCCCCH-------HHHHHHHHHCCCcc
Confidence 76556553 35567777888775
No 337
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=50.87 E-value=92 Score=32.30 Aligned_cols=89 Identities=20% Similarity=0.227 Sum_probs=51.1
Q ss_pred HHHHHHHHhccceEEeccccCCCCCH------HHHHHHHHHHHHHHhccccCCCCCCCCCcccCCChhHHHHHHHHHHHh
Q 008112 399 SDIAIAVREGADAVMLSGETAHGKFP------LKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMSN 472 (577)
Q Consensus 399 ~Dv~nav~~G~D~imLs~ETa~G~yP------~eaV~~m~~I~~~aE~~~~~~~~~~~l~~~~~~~~~~~ia~~a~~~a~ 472 (577)
.|....-.-|+|++|+.+ .|..| -+.+..|..|..+.-......--- +..-++...++ .+|.
T Consensus 38 ~dA~~leegG~DavivEN---~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGv----NVLrNd~vaA~-----~IA~ 105 (263)
T COG0434 38 RDAAALEEGGVDAVIVEN---YGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGV----NVLRNDAVAAL-----AIAY 105 (263)
T ss_pred HHHHHHHhCCCcEEEEec---cCCCCCCCCCChHHHHHHHHHHHHHHHhcccccee----eeeccccHHHH-----HHHH
Confidence 444456678999999964 34333 488999999999887654321100 01122333333 3344
Q ss_pred hcCc-e-------EEEEcCChH---HHHHHHhhCCCCe
Q 008112 473 TLGT-S-------IVVFTRTGF---MAILLSHYRPSGT 499 (577)
Q Consensus 473 ~~~a-a-------IiV~T~sG~---tA~~is~~RP~~P 499 (577)
..++ . =+.+|..|- -|..+.|||++.+
T Consensus 106 a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~ 143 (263)
T COG0434 106 AVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLG 143 (263)
T ss_pred hcCCCEEEEEeeeceEecccceecchHHHHHHHHHhcc
Confidence 4444 2 345777764 5677777776443
No 338
>PLN02535 glycolate oxidase
Probab=50.49 E-value=38 Score=36.94 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=45.6
Q ss_pred CHHHHHHHHhcCCCEEEEcCC---------CCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEEE
Q 008112 278 DWDDIKFGVDNKVDFYAVSFV---------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAM 344 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~SfV---------~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGIm 344 (577)
+.+|.+.+.+.|+|+|.+|.. -+.+-+.++++.+ +.++.||+- -||.|-.+|+++ +|+++
T Consensus 233 ~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av---~~~ipVi~d----GGIr~g~Dv~KALalGA~aV~ 305 (364)
T PLN02535 233 TREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAV---GGRVPVLLD----GGVRRGTDVFKALALGAQAVL 305 (364)
T ss_pred CHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHH---hcCCCEEee----CCCCCHHHHHHHHHcCCCEEE
Confidence 456778889999999999832 2233344444333 445777762 578888888775 89999
Q ss_pred EcCCCc
Q 008112 345 VARGDL 350 (577)
Q Consensus 345 IaRGDL 350 (577)
+||.=|
T Consensus 306 vGr~~l 311 (364)
T PLN02535 306 VGRPVI 311 (364)
T ss_pred ECHHHH
Confidence 998776
No 339
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=50.40 E-value=2.7e+02 Score=30.38 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 008112 302 QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (577)
Q Consensus 302 ~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~AT 381 (577)
+.++.++++.++ ..+.+++-+-+.+.++-+.+ .+|.+-||-+++-- -.+++++.+.||||++.|
T Consensus 152 ~gl~~L~~~~~e--~Gl~~~tev~d~~~v~~~~~---~~d~lqIga~~~~n-----------~~LL~~va~t~kPVllk~ 215 (352)
T PRK13396 152 SALELLAAAREA--TGLGIITEVMDAADLEKIAE---VADVIQVGARNMQN-----------FSLLKKVGAQDKPVLLKR 215 (352)
T ss_pred HHHHHHHHHHHH--cCCcEEEeeCCHHHHHHHHh---hCCeEEECcccccC-----------HHHHHHHHccCCeEEEeC
Confidence 345555555444 35778888877776665555 48999999665521 335778888999999977
Q ss_pred hhhHhhhcCCCCChHhHHHHHHHHHh-ccceEEeccc---cCCCCCHH
Q 008112 382 NMLESMIVHPTPTRAEVSDIAIAVRE-GADAVMLSGE---TAHGKFPL 425 (577)
Q Consensus 382 q~LeSM~~~~~PtrAEv~Dv~nav~~-G~D~imLs~E---Ta~G~yP~ 425 (577)
.|. +|-.|+...+..+.. |.+-++|..= |-...||.
T Consensus 216 G~~--------~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~ 255 (352)
T PRK13396 216 GMA--------ATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTR 255 (352)
T ss_pred CCC--------CCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCC
Confidence 654 578899888887764 7766777533 32335773
No 340
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=50.39 E-value=1.4e+02 Score=30.78 Aligned_cols=170 Identities=18% Similarity=0.135 Sum_probs=86.7
Q ss_pred hHHHHHHh-cCEEEEcC-CCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHH-HHHHhc
Q 008112 332 NLHSIITA-SDGAMVAR-GDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIA-IAVREG 408 (577)
Q Consensus 332 NldeIl~~-sDGImIaR-GDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~-nav~~G 408 (577)
+++-.++. +||++++- .-=+..|..++-..+.+..++.+ .-..|+++-+. ..+-.|..+.+ .+...|
T Consensus 27 ~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~-~~~~~vi~gv~---------~~st~~~i~~a~~a~~~G 96 (289)
T PF00701_consen 27 LIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAA-AGRVPVIAGVG---------ANSTEEAIELARHAQDAG 96 (289)
T ss_dssp HHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHH-TTSSEEEEEEE---------SSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHc-cCceEEEecCc---------chhHHHHHHHHHHHhhcC
Confidence 44555555 99999951 11122233333333333333332 23467776543 22334554444 477899
Q ss_pred cceEEeccccCCCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccCCC-hhHHHHHHHHHHHhhcCc-eEEEEcCC--
Q 008112 409 ADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNH-MSEMFAYHATMMSNTLGT-SIVVFTRT-- 484 (577)
Q Consensus 409 ~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~l~~~~~~~-~~~~ia~~a~~~a~~~~a-aIiV~T~s-- 484 (577)
+|++|+..=--...-+-+.+++.+.|+...+.-+.. |+. ......+ ..+.+ .++++ +.. .-+=.+..
T Consensus 97 ad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~i---Yn~-P~~tg~~ls~~~l----~~L~~-~~nv~giK~s~~~~ 167 (289)
T PF00701_consen 97 ADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIII---YNN-PARTGNDLSPETL----ARLAK-IPNVVGIKDSSGDL 167 (289)
T ss_dssp -SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEE---EEB-HHHHSSTSHHHHH----HHHHT-STTEEEEEESSSBH
T ss_pred ceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEE---EEC-CCccccCCCHHHH----HHHhc-CCcEEEEEcCchhH
Confidence 999998755444556778899999999766543211 110 0000111 22322 44666 433 11223322
Q ss_pred hHHHHHHHhhCCCCeEEEEcCcHHHhhhhcccCCeeEEE
Q 008112 485 GFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIY 523 (577)
Q Consensus 485 G~tA~~is~~RP~~PIIAvT~~~~taR~L~L~~GV~Pvl 523 (577)
-+..+.+.+..|+..|+.. .+..+...| .+|..-..
T Consensus 168 ~~~~~~~~~~~~~~~v~~G-~d~~~~~~l--~~G~~G~i 203 (289)
T PF00701_consen 168 ERLIQLLRAVGPDFSVFCG-DDELLLPAL--AAGADGFI 203 (289)
T ss_dssp HHHHHHHHHSSTTSEEEES-SGGGHHHHH--HTTSSEEE
T ss_pred HHHHHHhhhcccCeeeecc-ccccccccc--cccCCEEE
Confidence 2355556667788888877 555555444 34555544
No 341
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=49.99 E-value=3.3e+02 Score=28.67 Aligned_cols=153 Identities=13% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcC------------------------------CCceEEEeecChh
Q 008112 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCG------------------------------ADIHVIVKIESAD 328 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~------------------------------~~i~IiaKIEt~~ 328 (577)
.+.++.|.+.|.- |..-.+.+.+.++.+.+...+.+ ..++|...+....
T Consensus 5 k~ll~~A~~~~yA-V~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~ 83 (282)
T TIGR01858 5 KYMLQDAQAGGYA-VPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHHE 83 (282)
T ss_pred HHHHHHHHHcCCe-EEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_pred hHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCce--------EEEehhhHhhhcCCCCChHhHH
Q 008112 329 SIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAV--------IVATNMLESMIVHPTPTRAEVS 399 (577)
Q Consensus 329 gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPv--------i~ATq~LeSM~~~~~PtrAEv~ 399 (577)
-++.+..=+.. .+-||+. |-.+|+++=...-+++++.|++.|.+| ..-..+.........-+.+|+.
T Consensus 84 ~~e~i~~ai~~GFtSVM~D----gS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~ 159 (282)
T TIGR01858 84 SLDDIRQKVHAGVRSAMID----GSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAK 159 (282)
T ss_pred CHHHHHHHHHcCCCEEeec----CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHH
Q ss_pred HHHHHHHhccceEEeccccCCCCC---HHHHHHHHHHHHHHH
Q 008112 400 DIAIAVREGADAVMLSGETAHGKF---PLKAVKVMHTVSLRT 438 (577)
Q Consensus 400 Dv~nav~~G~D~imLs~ETa~G~y---P~eaV~~m~~I~~~a 438 (577)
+.... -|+|++-.+--|+.|.| |.--...|.+|....
T Consensus 160 ~Fv~~--TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~ 199 (282)
T TIGR01858 160 EFVEA--TGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVV 199 (282)
T ss_pred HHHHH--HCcCEEecccCccccCcCCCCccCHHHHHHHHHHh
No 342
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=49.67 E-value=66 Score=34.77 Aligned_cols=95 Identities=21% Similarity=0.195 Sum_probs=63.0
Q ss_pred CHHHHHHHHhcCCCEEEEcCC---------CCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEEE
Q 008112 278 DWDDIKFGVDNKVDFYAVSFV---------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAM 344 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~SfV---------~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGIm 344 (577)
..+|.+.+.+.|+|+|.+|.- .+.+-+.++++.+...+.++.||+- -||.|=.+|+++ +|+++
T Consensus 223 ~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~----GGIr~G~Dv~kalaLGA~aV~ 298 (344)
T cd02922 223 TVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVD----GGVRRGTDVLKALCLGAKAVG 298 (344)
T ss_pred CHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEe----CCCCCHHHHHHHHHcCCCEEE
Confidence 368888999999999999863 3444566666665555566777763 577777777775 99999
Q ss_pred EcCCCccCCC--CCCc----HHHHHHHHHHHHHHcCCc
Q 008112 345 VARGDLGAEL--PIEE----VPLLQEEIIRTCRSMGKA 376 (577)
Q Consensus 345 IaRGDLg~el--g~e~----v~~~qk~Ii~~c~~aGKP 376 (577)
|||.=|-.-. |.+. +..+++++-......|..
T Consensus 299 iG~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~~ 336 (344)
T cd02922 299 LGRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVT 336 (344)
T ss_pred ECHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9987663222 3332 334445555555555643
No 343
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=49.61 E-value=72 Score=31.81 Aligned_cols=40 Identities=33% Similarity=0.407 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 362 LQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 362 ~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
.-.++++.|+++|.|++=- .-|. +++..|...|+|.+=+=
T Consensus 89 ~~~~v~~~~~~~~i~~iPG-----------~~Tp---tEi~~A~~~G~~~vK~F 128 (196)
T PF01081_consen 89 FDPEVIEYAREYGIPYIPG-----------VMTP---TEIMQALEAGADIVKLF 128 (196)
T ss_dssp --HHHHHHHHHHTSEEEEE-----------ESSH---HHHHHHHHTT-SEEEET
T ss_pred CCHHHHHHHHHcCCcccCC-----------cCCH---HHHHHHHHCCCCEEEEe
Confidence 4578999999999998621 1133 44889999999998884
No 344
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=49.39 E-value=2.4e+02 Score=29.25 Aligned_cols=73 Identities=21% Similarity=0.175 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHH-HHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHh
Q 008112 362 LQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTE 439 (577)
Q Consensus 362 ~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~n-av~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE 439 (577)
.-+..++.++++|+-+.++= +|...+..+.+.+.+++. +...|+|.|.|. +|.=.-.|.+.-++++.+.++..
T Consensus 119 ~~~~~i~~ak~~G~~v~~~i----~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~-DT~G~~~P~~v~~lv~~l~~~~~ 192 (275)
T cd07937 119 NLEVAIKAVKKAGKHVEGAI----CYTGSPVHTLEYYVKLAKELEDMGADSICIK-DMAGLLTPYAAYELVKALKKEVG 192 (275)
T ss_pred HHHHHHHHHHHCCCeEEEEE----EecCCCCCCHHHHHHHHHHHHHcCCCEEEEc-CCCCCCCHHHHHHHHHHHHHhCC
Confidence 44567778888897765421 233445667777777766 456699999996 88888899999888888876543
No 345
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.31 E-value=42 Score=35.36 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=47.5
Q ss_pred CHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhH--hhHHHHHHh-cCEEEEcC
Q 008112 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVAR 347 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-sDGImIaR 347 (577)
..+++..+++.|+|.|.+=.. ++++++++.+.+. .... ||---|| +|+.++++. +|.|-+|.
T Consensus 203 tleea~ea~~~gaDiI~LDn~-s~e~l~~av~~~~---~~~~----leaSGGI~~~ni~~yA~tGVD~Is~Ga 267 (281)
T PRK06106 203 TLDQLEEALELGVDAVLLDNM-TPDTLREAVAIVA---GRAI----TEASGRITPETAPAIAASGVDLISVGW 267 (281)
T ss_pred CHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHhC---CCce----EEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 567888899999999999886 7788888888763 2222 5655555 588899888 99999873
No 346
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=49.28 E-value=56 Score=33.37 Aligned_cols=72 Identities=22% Similarity=0.135 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCCEEEEcCCCCH---HHHHHHHHHHHhcCCCceEEEe--ecChhhHhhHHHHHHh-cCEEEEcCCCccCC
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDA---QVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA-SDGAMVARGDLGAE 353 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa---~dv~~lr~~l~~~~~~i~IiaK--IEt~~gv~NldeIl~~-sDGImIaRGDLg~e 353 (577)
+..+.+.+.|+|+|.+---... .+.+.+++.-... .+++||+- |.|. +...+.+.. +|+||||||=|.-.
T Consensus 152 ~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~-~~ipIIgNGgI~s~---eda~e~l~~GAd~VmvgR~~l~~~ 227 (231)
T TIGR00736 152 IDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEF-NDKIIIGNNSIDDI---ESAKEMLKAGADFVSVARAILKGN 227 (231)
T ss_pred HHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhc-CCCcEEEECCcCCH---HHHHHHHHhCCCeEEEcHhhccCC
Confidence 3335567899999988522221 3566665544322 23778883 4443 334444445 99999999887655
Q ss_pred CC
Q 008112 354 LP 355 (577)
Q Consensus 354 lg 355 (577)
+.
T Consensus 228 ~~ 229 (231)
T TIGR00736 228 VE 229 (231)
T ss_pred cC
Confidence 54
No 347
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=49.18 E-value=1.7e+02 Score=29.70 Aligned_cols=95 Identities=25% Similarity=0.217 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCceEEEeecC---hhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHc
Q 008112 298 VKDAQVVHELKNYLKSCGADIHVIVKIES---ADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSM 373 (577)
Q Consensus 298 V~sa~dv~~lr~~l~~~~~~i~IiaKIEt---~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~a 373 (577)
-++++.+.++.+.+.+. +++|.+||=. .+.++-...+.+. +|+|-+.-+.-+ +..++ +.++..+ .
T Consensus 122 l~~p~~l~eiv~avr~~--~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g---~~ad~-----~~I~~i~-~ 190 (233)
T cd02911 122 LKDPERLSEFIKALKET--GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPG---NHADL-----KKIRDIS-T 190 (233)
T ss_pred cCCHHHHHHHHHHHHhc--CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCC---CCCcH-----HHHHHhc-C
Confidence 35677777777777653 6889999832 1122222222222 787765322222 11122 2333333 5
Q ss_pred CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 374 GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 374 GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
++|+|-.- ..-+. .|+..++..|+|+||+.
T Consensus 191 ~ipVIgnG---------gI~s~---eda~~~l~~GaD~VmiG 220 (233)
T cd02911 191 ELFIIGNN---------SVTTI---ESAKEMFSYGADMVSVA 220 (233)
T ss_pred CCEEEEEC---------CcCCH---HHHHHHHHcCCCEEEEc
Confidence 78987532 33333 56777778899999996
No 348
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=49.02 E-value=2.6e+02 Score=27.22 Aligned_cols=116 Identities=17% Similarity=0.235 Sum_probs=65.5
Q ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCC---Cc---cCCCC
Q 008112 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARG---DL---GAELP 355 (577)
Q Consensus 282 I~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRG---DL---g~elg 355 (577)
++.+.+.++|+|-+..-++.+.+.++++.+ +.++.....+-+..-.+.....-..+|++++.-. +. |...+
T Consensus 66 ~~ia~~~~~d~Vqlhg~e~~~~~~~l~~~~---~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~ 142 (203)
T cd00405 66 LEIAEELGLDVVQLHGDESPEYCAQLRARL---GLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFD 142 (203)
T ss_pred HHHHHhcCCCEEEECCCCCHHHHHHHHhhc---CCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEC
Confidence 345678899999999877888888888765 3332211445443332222222234899988532 11 22333
Q ss_pred CCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhc-cceEEecc--ccCCCC
Q 008112 356 IEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREG-ADAVMLSG--ETAHGK 422 (577)
Q Consensus 356 ~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G-~D~imLs~--ETa~G~ 422 (577)
++.+.. + . ..+|++.|..+ .| ..+..++..| +|++-+++ |++-|.
T Consensus 143 ~~~l~~----~----~-~~~PvilaGGI--------~~-----~Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 143 WSLLRG----L----A-SRKPVILAGGL--------TP-----DNVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred hHHhhc----c----c-cCCCEEEECCC--------Ch-----HHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 332221 1 1 56899988653 12 2356666677 88887653 445463
No 349
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=49.02 E-value=2.1e+02 Score=29.70 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=72.0
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEE--EcCCCccCCCCCC
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAM--VARGDLGAELPIE 357 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGIm--IaRGDLg~elg~e 357 (577)
+-++.+.+.|+|++.+|=.. .++.+++.+.+.+.|-+ .|.-+=...--+.+..|.+.++|.+ +++ .|+ .|..
T Consensus 108 ~f~~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~gl~--~I~lvap~t~~eri~~i~~~s~gfIY~vs~--~Gv-TG~~ 181 (258)
T PRK13111 108 RFAADAAEAGVDGLIIPDLP-PEEAEELRAAAKKHGLD--LIFLVAPTTTDERLKKIASHASGFVYYVSR--AGV-TGAR 181 (258)
T ss_pred HHHHHHHHcCCcEEEECCCC-HHHHHHHHHHHHHcCCc--EEEEeCCCCCHHHHHHHHHhCCCcEEEEeC--CCC-CCcc
Confidence 45677788999999999664 57788888877765543 3333322223567888998888755 454 222 2221
Q ss_pred -cHHHHHHHHHHHHHHc-CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 358 -EVPLLQEEIIRTCRSM-GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 358 -~v~~~qk~Ii~~c~~a-GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
..+.-....++.++++ ++|+++... .-++.+ +..+.. ++|++...
T Consensus 182 ~~~~~~~~~~i~~vk~~~~~pv~vGfG---------I~~~e~---v~~~~~-~ADGviVG 228 (258)
T PRK13111 182 SADAADLAELVARLKAHTDLPVAVGFG---------ISTPEQ---AAAIAA-VADGVIVG 228 (258)
T ss_pred cCCCccHHHHHHHHHhcCCCcEEEEcc---------cCCHHH---HHHHHH-hCCEEEEc
Confidence 2334445556666654 899987544 334444 444443 49998874
No 350
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=48.90 E-value=44 Score=35.49 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=39.6
Q ss_pred HHHHHHHhcCCCEEEEcCCCC-----------HHHHHHHHHHHHhcCCCceEEE--eecChhhHhhHHHHHHh--cCEEE
Q 008112 280 DDIKFGVDNKVDFYAVSFVKD-----------AQVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITA--SDGAM 344 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~s-----------a~dv~~lr~~l~~~~~~i~Iia--KIEt~~gv~NldeIl~~--sDGIm 344 (577)
+.++...+.|+|+|.+.- ++ .+.+.++++. .+++||+ -|.|+ +.+.++++. +||||
T Consensus 152 ~~a~~l~~~Gvd~i~Vh~-Rt~~~~y~g~~~~~~~i~~ik~~-----~~iPVi~nGdI~t~---~da~~~l~~~g~DgVm 222 (312)
T PRK10550 152 EIADAVQQAGATELVVHG-RTKEDGYRAEHINWQAIGEIRQR-----LTIPVIANGEIWDW---QSAQQCMAITGCDAVM 222 (312)
T ss_pred HHHHHHHhcCCCEEEECC-CCCccCCCCCcccHHHHHHHHhh-----cCCcEEEeCCcCCH---HHHHHHHhccCCCEEE
Confidence 334455678999998842 22 2234444432 2577777 46665 355555543 99999
Q ss_pred EcCCCccC
Q 008112 345 VARGDLGA 352 (577)
Q Consensus 345 IaRGDLg~ 352 (577)
||||=|+-
T Consensus 223 iGRg~l~n 230 (312)
T PRK10550 223 IGRGALNI 230 (312)
T ss_pred EcHHhHhC
Confidence 99996654
No 351
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=48.88 E-value=2.2e+02 Score=30.12 Aligned_cols=98 Identities=12% Similarity=0.157 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCCEEEEc------CCCCHHHHHHH-HHHHHhcCCCceEEEeec---ChhhHhhHHHHHHh-cCEEEEcC
Q 008112 279 WDDIKFGVDNKVDFYAVS------FVKDAQVVHEL-KNYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVAR 347 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~S------fV~sa~dv~~l-r~~l~~~~~~i~IiaKIE---t~~gv~NldeIl~~-sDGImIaR 347 (577)
.+.+++.++.|+++|++. +.-|.++=+++ +...+..+.+++||+-+= |.++++....--+. +|++|+-+
T Consensus 32 ~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~ 111 (309)
T cd00952 32 ARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGR 111 (309)
T ss_pred HHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 344577788999999763 22334444444 344455667799999874 44555555554444 89999975
Q ss_pred CCccCCCCCCcHHHHHHHHHHHHHHc-CCceEEE
Q 008112 348 GDLGAELPIEEVPLLQEEIIRTCRSM-GKAVIVA 380 (577)
Q Consensus 348 GDLg~elg~e~v~~~qk~Ii~~c~~a-GKPvi~A 380 (577)
-..-. ...+.+...-+.| |.+. +.|+++.
T Consensus 112 P~y~~-~~~~~l~~yf~~v---a~a~~~lPv~iY 141 (309)
T cd00952 112 PMWLP-LDVDTAVQFYRDV---AEAVPEMAIAIY 141 (309)
T ss_pred CcCCC-CCHHHHHHHHHHH---HHhCCCCcEEEE
Confidence 43211 1223344444444 4456 5898874
No 352
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=48.80 E-value=1.5e+02 Score=31.90 Aligned_cols=131 Identities=12% Similarity=0.140 Sum_probs=66.8
Q ss_pred CCCCccCHHHH--------HHHHhcCCCEEEEc-------------CCCCHHH------------HHHHHHHHHh-cC--
Q 008112 272 PSITEKDWDDI--------KFGVDNKVDFYAVS-------------FVKDAQV------------VHELKNYLKS-CG-- 315 (577)
Q Consensus 272 p~ltekD~~dI--------~~al~~gvD~I~~S-------------fV~sa~d------------v~~lr~~l~~-~~-- 315 (577)
..||..|++.| +.+.+.|+|+|-+. ..+...| +.++.+.+.+ .+
T Consensus 132 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~ 211 (353)
T cd04735 132 RELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKH 211 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccc
Confidence 46788888776 45677999998653 2322111 2222222222 24
Q ss_pred --CCceEEEeecChhh------HhhHHHHHH----h-cCEEEEcCCCccCCCCCC-c-HHHHHHHHHHHHHHcCCceEEE
Q 008112 316 --ADIHVIVKIESADS------IPNLHSIIT----A-SDGAMVARGDLGAELPIE-E-VPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 316 --~~i~IiaKIEt~~g------v~NldeIl~----~-sDGImIaRGDLg~elg~e-~-v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
.+..|-.+|--.+. .+..-+++. . +|.|=|..|.....-... . -....+.+ +.+...++|||..
T Consensus 212 ~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~i-k~~~~~~iPVi~~ 290 (353)
T cd04735 212 ADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELV-KERIAGRLPLIAV 290 (353)
T ss_pred cCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHH-HHHhCCCCCEEEE
Confidence 56777777753221 222223332 2 788888776543211111 1 11111222 2222237898875
Q ss_pred ehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 381 TNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 381 Tq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
..+. |.+ ++..++..|+|+|++.
T Consensus 291 Ggi~---------t~e---~ae~~l~~gaD~V~~g 313 (353)
T cd04735 291 GSIN---------TPD---DALEALETGADLVAIG 313 (353)
T ss_pred CCCC---------CHH---HHHHHHHcCCChHHHh
Confidence 4422 333 3556777799999874
No 353
>PRK07476 eutB threonine dehydratase; Provisional
Probab=48.74 E-value=2.8e+02 Score=29.21 Aligned_cols=118 Identities=10% Similarity=0.083 Sum_probs=71.4
Q ss_pred HHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccC
Q 008112 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (577)
Q Consensus 365 ~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~ 444 (577)
.+...|++.|.|+++. .|..+.-..+...-..|++.+... ....++++...+++++-. ..+.
T Consensus 81 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~V~~~~------~~~~~~~~~a~~~~~~~g-~~~~ 142 (322)
T PRK07476 81 ALAYAARALGIRATIC-----------MSRLVPANKVDAIRALGAEVRIVG------RSQDDAQAEVERLVREEG-LTMV 142 (322)
T ss_pred HHHHHHHHhCCCEEEE-----------eCCCCCHHHHHHHHHcCCEEEEEC------CCHHHHHHHHHHHHHhcC-CEEe
Confidence 4566899999998764 233333334566677999976653 224577777666655422 2222
Q ss_pred CCCCCCCCcccCCChhHHHHHHHHHHHhhcC-c-eEEEEcCChHHHHHHH----hhCCCCeEEEEcCcH
Q 008112 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLG-T-SIVVFTRTGFMAILLS----HYRPSGTIFAFTNEK 507 (577)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~-a-aIiV~T~sG~tA~~is----~~RP~~PIIAvT~~~ 507 (577)
.+ +.+ + ...+....-+.++.++++ . .||+.+-+|.++--++ .+.|...||++-+..
T Consensus 143 ~~-~~n---~---~~~~g~~t~~~Ei~~Q~~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~ 204 (322)
T PRK07476 143 PP-FDD---P---RIIAGQGTIGLEILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMER 204 (322)
T ss_pred CC-CCC---c---ceeechhHHHHHHHHhCcCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 11 111 1 111222344567777765 3 7999998998755544 567999999999853
No 354
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=48.51 E-value=1.5e+02 Score=30.41 Aligned_cols=155 Identities=17% Similarity=0.183 Sum_probs=77.1
Q ss_pred cCEEEEcCCCc--cCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHH-HHHhccceEEecc
Q 008112 340 SDGAMVARGDL--GAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSG 416 (577)
Q Consensus 340 sDGImIaRGDL--g~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~n-av~~G~D~imLs~ 416 (577)
+||+++. |-- +..+..++-..+.+.+++.++ -..|+++-+. .++-.|..+.+. +-..|+|++|+..
T Consensus 32 v~gi~~~-GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~gv~---------~~~~~~~i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 32 VDGLVVL-GTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAGVG---------ANSTREAIELARHAEEAGADGVLVVP 100 (281)
T ss_pred CCEEEEC-CCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEecC---------CccHHHHHHHHHHHHHcCCCEEEECC
Confidence 8999875 211 122222333333333333332 2467765432 345556666665 5556999999975
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcccc-CCCCCCCCCcccCCChhHHHHHHHHHHHhhcCceEEE-EcC--ChHHHHHHH
Q 008112 417 ETAHGKFPLKAVKVMHTVSLRTEATIT-GGAMPPNLGQAFKNHMSEMFAYHATMMSNTLGTSIVV-FTR--TGFMAILLS 492 (577)
Q Consensus 417 ETa~G~yP~eaV~~m~~I~~~aE~~~~-~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~aaIiV-~T~--sG~tA~~is 492 (577)
=.-...-+-+.++....|+.....-+. |. .+..-+. . -..+.+ .+++. .+..+-+ .|. -.+..+.+.
T Consensus 101 P~y~~~~~~~~~~~~~~ia~~~~~pi~iYn-~P~~tg~--~-l~~~~~----~~L~~-~~~v~giK~s~~d~~~~~~~~~ 171 (281)
T cd00408 101 PYYNKPSQEGIVAHFKAVADASDLPVILYN-IPGRTGV--D-LSPETI----ARLAE-HPNIVGIKDSSGDLDRLTRLIA 171 (281)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCCCCEEEEE-CccccCC--C-CCHHHH----HHHhc-CCCEEEEEeCCCCHHHHHHHHH
Confidence 443333467888889999887543211 11 0000001 1 112323 23443 2221112 332 234555666
Q ss_pred hhCCCCeEEEEcCcHHHhhhhcc
Q 008112 493 HYRPSGTIFAFTNEKRIQQRLSL 515 (577)
Q Consensus 493 ~~RP~~PIIAvT~~~~taR~L~L 515 (577)
..+|+..|+... +......+.+
T Consensus 172 ~~~~~~~v~~G~-d~~~~~~l~~ 193 (281)
T cd00408 172 LLGPDFAVLSGD-DDLLLPALAL 193 (281)
T ss_pred hcCCCeEEEEcc-hHHHHHHHHc
Confidence 666777777665 5666655443
No 355
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=48.49 E-value=2.2e+02 Score=28.49 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=78.0
Q ss_pred HHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecCh---------hhHhhHHHHHHh-cCEEEEcCCCccC
Q 008112 283 KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESA---------DSIPNLHSIITA-SDGAMVARGDLGA 352 (577)
Q Consensus 283 ~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~---------~gv~NldeIl~~-sDGImIaRGDLg~ 352 (577)
+-+..-|+-+|-.. +++||+++|+.. +++||--|-.. --++..++++++ +|.|-+. =..
T Consensus 6 ~Aa~~gGA~giR~~---~~~dI~aik~~v-----~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlD---aT~ 74 (192)
T PF04131_consen 6 KAAEEGGAVGIRAN---GVEDIRAIKKAV-----DLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALD---ATD 74 (192)
T ss_dssp HHHHHCT-SEEEEE---SHHHHHHHHTTB------S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE----SS
T ss_pred HHHHHCCceEEEcC---CHHHHHHHHHhc-----CCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEe---cCC
Confidence 34567789999876 889999998754 56777755421 135677888877 8888774 111
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEE--eccccCCCCCHHHHHHH
Q 008112 353 ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVM--LSGETAHGKFPLKAVKV 430 (577)
Q Consensus 353 elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~im--Ls~ETa~G~yP~eaV~~ 430 (577)
.. =|.--.+++...++.+.+ ++| .-+-+.|.-+|...|+|+|- |||=|...+..---.+.
T Consensus 75 R~----Rp~~l~~li~~i~~~~~l-~MA-------------Dist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~l 136 (192)
T PF04131_consen 75 RP----RPETLEELIREIKEKYQL-VMA-------------DISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFEL 136 (192)
T ss_dssp SS-----SS-HHHHHHHHHHCTSE-EEE-------------E-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHH
T ss_pred CC----CCcCHHHHHHHHHHhCcE-Eee-------------ecCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHH
Confidence 11 114556778888998843 333 22345668899999999998 67666655554456777
Q ss_pred HHHHHH
Q 008112 431 MHTVSL 436 (577)
Q Consensus 431 m~~I~~ 436 (577)
+++++.
T Consensus 137 v~~l~~ 142 (192)
T PF04131_consen 137 VRELVQ 142 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777765
No 356
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=48.48 E-value=4e+02 Score=29.99 Aligned_cols=163 Identities=22% Similarity=0.225 Sum_probs=89.4
Q ss_pred cCCCEEEEEEecCCCCceE-Eec-cccccccccCCCCEEEEe--------CCeEEEEEEEEeCCeEEEEEeeCcEec---
Q 008112 191 TSGQEFTFTIQRGVGSAEC-VSV-NYDDFVNDVEVGDMLLVD--------GGMMSLLVKSKTEDSVKCEVVDGGELK--- 257 (577)
Q Consensus 191 ~~G~~v~lt~~~~~~~~~~-i~v-~~~~~~~~v~~Gd~I~id--------DG~i~l~V~~v~~~~v~~~v~~gG~l~--- 257 (577)
..| .++|+..+....-.+ +|- ++..+--..+.|+.|++- .|..++.+.+..++.+ |.|.
T Consensus 39 ~sg-H~YFtLKD~~A~i~c~mf~~~~~~l~f~p~eG~~V~v~G~is~Y~~rG~YQi~~~~~~p~G~-------G~L~~~~ 110 (440)
T COG1570 39 ASG-HLYFTLKDERAQIRCVMFKGNNRRLKFRPEEGMQVLVRGKISLYEPRGDYQIVAESMEPAGL-------GALYLAF 110 (440)
T ss_pred CCc-cEEEEEccCCceEEEEEEcCcccccCCCccCCCEEEEEEEEEEEcCCCceEEEEecCCcCCh-------hHHHHHH
Confidence 345 788887654332222 222 122233346889988875 3444444444433322 1111
Q ss_pred -------cCceeeeCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhH
Q 008112 258 -------SRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI 330 (577)
Q Consensus 258 -------s~Kginlp~~~~~lp~ltekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv 330 (577)
...|.-=|...-++|.++.+ =+|+-| .+.+-++.+...+...-..+.|+.-==+.+|-
T Consensus 111 E~lK~kL~aEGlFd~~~KkpLP~~p~~-------------IGVITS--~tgAairDIl~~~~rR~P~~~viv~pt~VQG~ 175 (440)
T COG1570 111 EQLKAKLAAEGLFDPERKKPLPFFPKK-------------IGVITS--PTGAALRDILHTLSRRFPSVEVIVYPTLVQGE 175 (440)
T ss_pred HHHHHHHHhCCCcChhhcCCCCCCCCe-------------EEEEcC--CchHHHHHHHHHHHhhCCCCeEEEEeccccCC
Confidence 11233334444566655431 123444 67777777777776665556655544455666
Q ss_pred hhHHHHHHh---------cCEEEEcCCCccCCCCCCcHHHHH-HHHHHHHHHcCCceEEE
Q 008112 331 PNLHSIITA---------SDGAMVARGDLGAELPIEEVPLLQ-EEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 331 ~NldeIl~~---------sDGImIaRGDLg~elg~e~v~~~q-k~Ii~~c~~aGKPvi~A 380 (577)
+.-.+|++. .|.++||||-=++ |++-..- +.++++.-+..+|+|-|
T Consensus 176 ~A~~eIv~aI~~an~~~~~DvlIVaRGGGSi----EDLW~FNdE~vaRAi~~s~iPvISA 231 (440)
T COG1570 176 GAAEEIVEAIERANQRGDVDVLIVARGGGSI----EDLWAFNDEIVARAIAASRIPVISA 231 (440)
T ss_pred CcHHHHHHHHHHhhccCCCCEEEEecCcchH----HHHhccChHHHHHHHHhCCCCeEee
Confidence 666666653 7999999995432 3333333 34556666778999876
No 357
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=48.47 E-value=2.7e+02 Score=30.76 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHHHHHc-CCceEEEehhhHhhhcCCCCChHhHHHHHH-HHHhccceEEeccc
Q 008112 358 EVPLLQEEIIRTCRSM-GKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSGE 417 (577)
Q Consensus 358 ~v~~~qk~Ii~~c~~a-GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~n-av~~G~D~imLs~E 417 (577)
.-+..-+++++.++++ .+|+++ .-.|.-.++.+++. +...|+|++.+.+=
T Consensus 165 q~~e~~~~i~~~Vk~~~~iPv~v----------KLsPn~t~i~~ia~aa~~~Gadgi~liNT 216 (385)
T PLN02495 165 QDCDLLEEVCGWINAKATVPVWA----------KMTPNITDITQPARVALKSGCEGVAAINT 216 (385)
T ss_pred cCHHHHHHHHHHHHHhhcCceEE----------EeCCChhhHHHHHHHHHHhCCCEEEEecc
Confidence 3477888888888775 799886 23466667888888 66789999999753
No 358
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=48.33 E-value=59 Score=34.05 Aligned_cols=65 Identities=23% Similarity=0.262 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCCEEEEcCC---------CCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEEEE
Q 008112 279 WDDIKFGVDNKVDFYAVSFV---------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMV 345 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV---------~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGImI 345 (577)
.++.+.+.+.|+|+|.++-- .+.+-+.++++.+ +.++.||+- -||.+-.++++. +|++|+
T Consensus 183 ~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~ipvia~----GGI~~~~d~~kal~lGAd~V~i 255 (299)
T cd02809 183 PEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAV---GGRIEVLLD----GGIRRGTDVLKALALGADAVLI 255 (299)
T ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHh---cCCCeEEEe----CCCCCHHHHHHHHHcCCCEEEE
Confidence 46678889999999998541 2333444444433 346777773 466666776665 999999
Q ss_pred cCCCc
Q 008112 346 ARGDL 350 (577)
Q Consensus 346 aRGDL 350 (577)
||.-|
T Consensus 256 g~~~l 260 (299)
T cd02809 256 GRPFL 260 (299)
T ss_pred cHHHH
Confidence 98544
No 359
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=48.26 E-value=3.2e+02 Score=29.49 Aligned_cols=131 Identities=20% Similarity=0.170 Sum_probs=0.0
Q ss_pred CCCCCCCCCccCHHHHHHHHh-cCCCEEEEcCCC-----------CH----HHHHHHHHHHHhcCCCceEEEeec-Chhh
Q 008112 267 KSATLPSITEKDWDDIKFGVD-NKVDFYAVSFVK-----------DA----QVVHELKNYLKSCGADIHVIVKIE-SADS 329 (577)
Q Consensus 267 ~~~~lp~ltekD~~dI~~al~-~gvD~I~~SfV~-----------sa----~dv~~lr~~l~~~~~~i~IiaKIE-t~~g 329 (577)
..+..+.+..++.+++..+++ .++|.+.+-.-- +- +.++++++.+ +++|++|+= +...
T Consensus 125 aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~-----~vPVivK~~g~g~s 199 (352)
T PRK05437 125 ANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSAL-----PVPVIVKEVGFGIS 199 (352)
T ss_pred eecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhh-----CCCEEEEeCCCCCc
Q ss_pred HhhHHHHHHh-cCEEEEcCCCcc---------------CCCCCCcHHHHHHHHHHHHHHc--CCceEEEehhhHhhhcCC
Q 008112 330 IPNLHSIITA-SDGAMVARGDLG---------------AELPIEEVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHP 391 (577)
Q Consensus 330 v~NldeIl~~-sDGImIaRGDLg---------------~elg~e~v~~~qk~Ii~~c~~a--GKPvi~ATq~LeSM~~~~ 391 (577)
.+....+.+. +|+|.|+-.- | ..-...++..-.-..+..++++ +.|+|....+-
T Consensus 200 ~~~a~~l~~~Gvd~I~Vsg~G-Gt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~------- 271 (352)
T PRK05437 200 KETAKRLADAGVKAIDVAGAG-GTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIR------- 271 (352)
T ss_pred HHHHHHHHHcCCCEEEECCCC-CCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCC-------
Q ss_pred CCChHhHHHHHHHHHhccceEEec
Q 008112 392 TPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 392 ~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
...|+..++..|+|++++.
T Consensus 272 -----~~~dv~k~l~~GAd~v~ig 290 (352)
T PRK05437 272 -----NGLDIAKALALGADAVGMA 290 (352)
T ss_pred -----CHHHHHHHHHcCCCEEEEh
No 360
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=47.91 E-value=1.6e+02 Score=29.29 Aligned_cols=101 Identities=16% Similarity=0.225 Sum_probs=63.4
Q ss_pred HHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHH
Q 008112 283 KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPL 361 (577)
Q Consensus 283 ~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~ 361 (577)
+.+++.|+..+=+.+ +++...+.++.+.++.+.+ ++.-.=|.--.++++..++. +|+++.+ .
T Consensus 29 ~a~~~gGi~~iEvt~-~~~~~~~~i~~l~~~~~~~--~~iGaGTV~~~~~~~~a~~aGA~fivsp--------------~ 91 (206)
T PRK09140 29 GALIEAGFRAIEIPL-NSPDPFDSIAALVKALGDR--ALIGAGTVLSPEQVDRLADAGGRLIVTP--------------N 91 (206)
T ss_pred HHHHHCCCCEEEEeC-CCccHHHHHHHHHHHcCCC--cEEeEEecCCHHHHHHHHHcCCCEEECC--------------C
Confidence 445667777777775 6666666666655544432 22222233334455555555 6666642 2
Q ss_pred HHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEe
Q 008112 362 LQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (577)
Q Consensus 362 ~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imL 414 (577)
.-..+++.|+..|.+++.-+. |. +++..+...|+|.+.+
T Consensus 92 ~~~~v~~~~~~~~~~~~~G~~-----------t~---~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 92 TDPEVIRRAVALGMVVMPGVA-----------TP---TEAFAALRAGAQALKL 130 (206)
T ss_pred CCHHHHHHHHHCCCcEEcccC-----------CH---HHHHHHHHcCCCEEEE
Confidence 335678899999999886433 33 3477888999999987
No 361
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=47.81 E-value=1.3e+02 Score=31.09 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=54.9
Q ss_pred HHHHHHh-cCEEEEcCCCc--cCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHH-HHHHhc
Q 008112 333 LHSIITA-SDGAMVARGDL--GAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIA-IAVREG 408 (577)
Q Consensus 333 ldeIl~~-sDGImIaRGDL--g~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~-nav~~G 408 (577)
++.+++. +||+++. |-- +..+..++-..+.+..++.++ -..|++.-+. ..+-.|..+.+ .|...|
T Consensus 25 i~~l~~~Gv~Gi~~~-GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~gv~---------~~s~~~~i~~a~~a~~~G 93 (285)
T TIGR00674 25 IDFQIENGTDAIVVV-GTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAGTG---------SNATEEAISLTKFAEDVG 93 (285)
T ss_pred HHHHHHcCCCEEEEC-ccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEeCC---------CccHHHHHHHHHHHHHcC
Confidence 3444443 8999984 221 233333343333344444332 2367775431 22333444444 478889
Q ss_pred cceEEeccccCCCCCHHHHHHHHHHHHHHHhc
Q 008112 409 ADAVMLSGETAHGKFPLKAVKVMHTVSLRTEA 440 (577)
Q Consensus 409 ~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~ 440 (577)
+|++|+..=.-...-+-+.++....|+..++.
T Consensus 94 ad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~ 125 (285)
T TIGR00674 94 ADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDL 125 (285)
T ss_pred CCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCC
Confidence 99999976554444457788899999887753
No 362
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=47.81 E-value=2.1e+02 Score=30.89 Aligned_cols=114 Identities=23% Similarity=0.230 Sum_probs=78.1
Q ss_pred CHHHHHHHHhc-CCCEEEEcCCC-CHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCC
Q 008112 278 DWDDIKFGVDN-KVDFYAVSFVK-DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAEL 354 (577)
Q Consensus 278 D~~dI~~al~~-gvD~I~~SfV~-sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~el 354 (577)
..+.....++. |+-.+..+|-. ..+++..++. ..+.++.++=|.. ....-.+. .|+++.-..|=|-+.
T Consensus 92 ~~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~------~g~~v~~~v~~~~---~A~~~~~~G~d~vI~~g~eAGGH~ 162 (336)
T COG2070 92 AEAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKA------AGIKVIHSVITVR---EALKAERAGADAVIAQGAEAGGHR 162 (336)
T ss_pred hHHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHH------cCCeEEEEeCCHH---HHHHHHhCCCCEEEecCCcCCCcC
Confidence 34444555666 99999999995 7777777765 2456777765542 22222233 899999887777777
Q ss_pred CC----CcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEe
Q 008112 355 PI----EEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (577)
Q Consensus 355 g~----e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imL 414 (577)
+. .....+..+|...++. +|||.|--+.+ -.+++.|...|+|++.+
T Consensus 163 g~~~~~~~t~~Lv~ev~~~~~~--iPViAAGGI~d------------g~~i~AAlalGA~gVq~ 212 (336)
T COG2070 163 GGVDLEVSTFALVPEVVDAVDG--IPVIAAGGIAD------------GRGIAAALALGADGVQM 212 (336)
T ss_pred CCCCCCccHHHHHHHHHHHhcC--CCEEEecCccC------------hHHHHHHHHhccHHHHh
Confidence 62 2446666667666655 89999887664 35788899999998765
No 363
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=47.76 E-value=1.6e+02 Score=27.63 Aligned_cols=94 Identities=21% Similarity=0.265 Sum_probs=55.3
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh--cCEEEEcCCCccCCCCCCcHHHHHHHHH
Q 008112 290 VDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--SDGAMVARGDLGAELPIEEVPLLQEEII 367 (577)
Q Consensus 290 vD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~--sDGImIaRGDLg~elg~e~v~~~qk~Ii 367 (577)
-..++.|| +.+.+.++++.. .+..+..-+++.........+... .|++.+. ...+..+++
T Consensus 92 ~~v~i~s~--~~~~l~~~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~~~~~i 153 (189)
T cd08556 92 ERVVVSSF--DHEALRALKELD----PEVPTGLLVDKPPLDPLLAELARALGADAVNPH------------YKLLTPELV 153 (189)
T ss_pred CCEEEEeC--CHHHHHHHHHhC----CCCcEEEEeecCcccchhhhHHHhcCCeEEccC------------hhhCCHHHH
Confidence 45566676 566676666543 444444444443332221112222 3333332 122568899
Q ss_pred HHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEe
Q 008112 368 RTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (577)
Q Consensus 368 ~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imL 414 (577)
+.|+++|+++++-|- . +..+...++..|+|+|+-
T Consensus 154 ~~~~~~g~~v~~wtv----------n---~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 154 RAAHAAGLKVYVWTV----------N---DPEDARRLLALGVDGIIT 187 (189)
T ss_pred HHHHHcCCEEEEEcC----------C---CHHHHHHHHHCCCCEEec
Confidence 999999999998762 1 234566788999999874
No 364
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=47.61 E-value=3.4e+02 Score=28.14 Aligned_cols=121 Identities=12% Similarity=0.090 Sum_probs=71.6
Q ss_pred HHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCC-HHHHHHHHHHHHHHHhcccc
Q 008112 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF-PLKAVKVMHTVSLRTEATIT 443 (577)
Q Consensus 365 ~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~y-P~eaV~~m~~I~~~aE~~~~ 443 (577)
-+...|+.+|.|+.+. .|..+....+...-..|++.+..-+ .| -.++++...++.++-..+++
T Consensus 72 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~~-----~~~~~~~~~~a~~~~~~~~~~~~ 135 (299)
T TIGR01136 72 ALAMVAAAKGYKLILT-----------MPETMSLERRKLLRAYGAELILTPA-----EEGMKGAIDKAEELAAETNKYVM 135 (299)
T ss_pred HHHHHHHHcCCcEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCC-----CCChHHHHHHHHHHHhhCCCeEe
Confidence 4556889999998764 3444444556667789999887642 23 23566655555443211111
Q ss_pred CCCCCCCCCcccCCChhHHHHHHHHHHHhhcC--c-eEEEEcCChHHH----HHHHhhCCCCeEEEEcCcH
Q 008112 444 GGAMPPNLGQAFKNHMSEMFAYHATMMSNTLG--T-SIVVFTRTGFMA----ILLSHYRPSGTIFAFTNEK 507 (577)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~--a-aIiV~T~sG~tA----~~is~~RP~~PIIAvT~~~ 507 (577)
..+ |.+. . .+..-...-+.++.++++ . .||+.+-+|.++ ..+..++|...|+++-+..
T Consensus 136 ~~~-~~~~----~-~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~ 200 (299)
T TIGR01136 136 LDQ-FENP----A-NPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAE 200 (299)
T ss_pred cCC-CCCc----h-hHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 111 1110 0 111112334557778875 4 788888888877 4445567999999999864
No 365
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=47.45 E-value=1e+02 Score=32.10 Aligned_cols=88 Identities=19% Similarity=0.215 Sum_probs=53.7
Q ss_pred CCccCHHH-HHHHHhcC-CCEEEEcCCCCH--HHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcC--
Q 008112 274 ITEKDWDD-IKFGVDNK-VDFYAVSFVKDA--QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVAR-- 347 (577)
Q Consensus 274 ltekD~~d-I~~al~~g-vD~I~~SfV~sa--~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaR-- 347 (577)
|.+.+.++ ++.++..+ +|+|++|=..+. -|...++.+-+.. .+++++ |=+--..+|+.++++.+||++|+-
T Consensus 154 l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~-~~~Pvl--lggGvt~eNv~e~l~~adGviVgS~~ 230 (257)
T TIGR00259 154 LGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETV-KDTPVL--AGSGVNLENVEELLSIADGVIVATTI 230 (257)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhcc-CCCeEE--EECCCCHHHHHHHHhhCCEEEECCCc
Confidence 66677755 45566676 999999987665 4455555432212 233332 235456779999999999999984
Q ss_pred ---CCccCCCCCCcHHHHHH
Q 008112 348 ---GDLGAELPIEEVPLLQE 364 (577)
Q Consensus 348 ---GDLg~elg~e~v~~~qk 364 (577)
|+.......+++....+
T Consensus 231 K~~G~~~n~~D~~rV~~Fm~ 250 (257)
T TIGR00259 231 KKDGVFNNFVDQARVSQFVE 250 (257)
T ss_pred ccCCccCCCcCHHHHHHHHH
Confidence 33333344444444433
No 366
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=47.29 E-value=1.9e+02 Score=30.20 Aligned_cols=114 Identities=18% Similarity=0.318 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCCCEEEE-cCC-----------CCHHHHHHHHHHHHhcCCCceEEEeecChhhH----hhHHHHHHh---
Q 008112 279 WDDIKFGVDNKVDFYAV-SFV-----------KDAQVVHELKNYLKSCGADIHVIVKIESADSI----PNLHSIITA--- 339 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~-SfV-----------~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv----~NldeIl~~--- 339 (577)
.+.+..|...|+|||-+ .|+ -++.++.+.|+.+ +.+++|++-|--+.+. .++++++..
T Consensus 92 ~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l---~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~ 168 (257)
T TIGR00259 92 VAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLL---GSEVKILADIVVKHAVHLGNRDLESIALDTVE 168 (257)
T ss_pred HHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHc---CCCcEEEeceeecccCcCCCCCHHHHHHHHHH
Confidence 45677788899999988 444 2455555555555 5689998866544433 467777762
Q ss_pred ---cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 340 ---SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 340 ---sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
+||+++.----|.+..++.+..+.+ .....|+++++.+ |..- +..++.. +|++..+
T Consensus 169 ~~~aDavivtG~~TG~~~d~~~l~~vr~------~~~~~PvllggGv----------t~eN---v~e~l~~-adGviVg 227 (257)
T TIGR00259 169 RGLADAVILSGKTTGTEVDLELLKLAKE------TVKDTPVLAGSGV----------NLEN---VEELLSI-ADGVIVA 227 (257)
T ss_pred hcCCCEEEECcCCCCCCCCHHHHHHHHh------ccCCCeEEEECCC----------CHHH---HHHHHhh-CCEEEEC
Confidence 7999997433444444333322211 1235799998763 2222 3344443 8888774
No 367
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=47.21 E-value=1.7e+02 Score=30.40 Aligned_cols=93 Identities=14% Similarity=0.013 Sum_probs=51.5
Q ss_pred HHHHHHhcCCCEEEEc------CCCCHHHHHHHHHHHHhcCCCceEEEeecC---hhhHhhHHHHHHh-cCEEEEcCCCc
Q 008112 281 DIKFGVDNKVDFYAVS------FVKDAQVVHELKNYLKSCGADIHVIVKIES---ADSIPNLHSIITA-SDGAMVARGDL 350 (577)
Q Consensus 281 dI~~al~~gvD~I~~S------fV~sa~dv~~lr~~l~~~~~~i~IiaKIEt---~~gv~NldeIl~~-sDGImIaRGDL 350 (577)
.+++.++.|+|+|++. +--|.++-.++.+...+.... |++.+-+ .++++-...--+. +|++|+.+-.+
T Consensus 25 li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~--vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~y 102 (279)
T cd00953 25 HCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDK--VIFQVGSLNLEESIELARAAKSFGIYAIASLPPYY 102 (279)
T ss_pred HHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCC--EEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCcC
Confidence 3467788999999773 334555555554444333222 7777753 3333333333333 89999865543
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 351 GAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 351 g~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
-...+.+.+....+.+.+ ..|+++.
T Consensus 103 ~~~~~~~~i~~yf~~v~~-----~lpv~iY 127 (279)
T cd00953 103 FPGIPEEWLIKYFTDISS-----PYPTFIY 127 (279)
T ss_pred CCCCCHHHHHHHHHHHHh-----cCCEEEE
Confidence 221122344444455544 7898874
No 368
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=47.16 E-value=48 Score=35.33 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCCEEEEcCCCCH---------------HHHHHHHHHHHhcCCCceEEEe--ecChhhHhhHHHHHHhcCE
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDA---------------QVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITASDG 342 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa---------------~dv~~lr~~l~~~~~~i~IiaK--IEt~~gv~NldeIl~~sDG 342 (577)
+.++.+.+.|+|.|.+. -|++ .+...+++.- +.-.+++||+- |.|.+ ++.+.+.-+||
T Consensus 145 ~~~~~l~~~G~~~itvH-gRt~~~qg~sg~~~~~~~~~~~~~i~~vk-~~~~~ipVi~NGdI~s~~---da~~~l~g~dg 219 (318)
T TIGR00742 145 DFVEIVSGKGCQNFIVH-ARKAWLSGLSPKENREIPPLRYERVYQLK-KDFPHLTIEINGGIKNSE---QIKQHLSHVDG 219 (318)
T ss_pred HHHHHHHHcCCCEEEEe-CCchhhcCCCccccccCCchhHHHHHHHH-HhCCCCcEEEECCcCCHH---HHHHHHhCCCE
Confidence 33455668999988654 4543 1334443332 22235777773 54443 34445556999
Q ss_pred EEEcCCCcc
Q 008112 343 AMVARGDLG 351 (577)
Q Consensus 343 ImIaRGDLg 351 (577)
||||||=|+
T Consensus 220 VMigRgal~ 228 (318)
T TIGR00742 220 VMVGREAYE 228 (318)
T ss_pred EEECHHHHh
Confidence 999999886
No 369
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=47.08 E-value=4e+02 Score=28.71 Aligned_cols=116 Identities=12% Similarity=0.092 Sum_probs=71.4
Q ss_pred CHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCC
Q 008112 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPI 356 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~ 356 (577)
..+.++.+++.++.+|.++|- ++.++.+++ + ..++++..+-|.. ......+. +|+|++-=.+=|-+.|.
T Consensus 71 ~~~~l~vi~e~~v~~V~~~~G-~P~~~~~lk----~--~Gi~v~~~v~s~~---~A~~a~~~GaD~vVaqG~EAGGH~G~ 140 (320)
T cd04743 71 RAAQLAVVRAIKPTFALIAGG-RPDQARALE----A--IGISTYLHVPSPG---LLKQFLENGARKFIFEGRECGGHVGP 140 (320)
T ss_pred hHHHHHHHHhcCCcEEEEcCC-ChHHHHHHH----H--CCCEEEEEeCCHH---HHHHHHHcCCCEEEEecCcCcCCCCC
Confidence 346788889999999998875 455554443 3 3678888886653 33333444 99999764444444442
Q ss_pred CcHHHHHHHHHHHHHH-------cCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhcc--------ceEEec
Q 008112 357 EEVPLLQEEIIRTCRS-------MGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGA--------DAVMLS 415 (577)
Q Consensus 357 e~v~~~qk~Ii~~c~~-------aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~--------D~imLs 415 (577)
..-..+..+++..... ...|||.|--+-+ -..++-+...|+ +++.+-
T Consensus 141 ~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~d------------gr~~aaalaLGA~~~~~Ga~~GV~mG 202 (320)
T cd04743 141 RSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHD------------ERSAAMVSALAAPLAERGAKVGVLMG 202 (320)
T ss_pred CCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCC------------HHHHHHHHHcCCcccccccccEEEEc
Confidence 2222222344433322 2699999887653 345667777877 788773
No 370
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=47.07 E-value=63 Score=32.59 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHH--------HHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEEEE
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQV--------VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMV 345 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~d--------v~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGImI 345 (577)
.....|.+.|+|+| .|||...+| +++++++++..+.+.+|++ .+++|.+++++. +|.+=+
T Consensus 113 ~Qa~~Aa~aGa~yi-spyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIla-----AS~r~~~~v~~~~~~G~d~vTi 184 (213)
T TIGR00875 113 AQALLAAKAGATYV-SPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIA-----ASVRHPRHVLEAALIGADIATM 184 (213)
T ss_pred HHHHHHHHcCCCEE-EeecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-----eccCCHHHHHHHHHcCCCEEEc
Confidence 33445677899977 499998877 5666777776677777776 567777777753 555544
No 371
>PRK08417 dihydroorotase; Provisional
Probab=47.00 E-value=4.1e+02 Score=28.79 Aligned_cols=128 Identities=9% Similarity=0.112 Sum_probs=69.2
Q ss_pred CCCCCCccCHHHH-HHHHhcCCCEEEE-----cCCCCHHHHHHHHHHHHhc-CCCceEEEeecChhhHhhHHHHHHh-cC
Q 008112 270 TLPSITEKDWDDI-KFGVDNKVDFYAV-----SFVKDAQVVHELKNYLKSC-GADIHVIVKIESADSIPNLHSIITA-SD 341 (577)
Q Consensus 270 ~lp~ltekD~~dI-~~al~~gvD~I~~-----SfV~sa~dv~~lr~~l~~~-~~~i~IiaKIEt~~gv~NldeIl~~-sD 341 (577)
.-|..+.+|.+.. +.|+..|+-.|+. |.+.+++.+....+..+.. +.-+....-....+.++.+++..+. ++
T Consensus 40 ~~~~~~~e~~~t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~ 119 (386)
T PRK08417 40 KNDSLSSKNLKSLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELPMQIFPSIRALDEDGKLSNIATLLKKGAK 119 (386)
T ss_pred CCCCcChhhHHHHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccCCcEEEEEEEECCCccHHHHHHHHHCCCE
Confidence 3344444443333 4566778877654 3455666776666554432 1112222322344446666666543 55
Q ss_pred EEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHh-----hh---------cCCCCChHhHHHHHHHHH
Q 008112 342 GAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLES-----MI---------VHPTPTRAEVSDIAIAVR 406 (577)
Q Consensus 342 GImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeS-----M~---------~~~~PtrAEv~Dv~nav~ 406 (577)
++.+. + . .-.....++++.+++.|+|+.+-.+--+- |. ...+|..+|...+..++.
T Consensus 120 ~~k~~-~------~--~~~~~l~~~~~~a~~~g~~V~~HaEd~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~ 189 (386)
T PRK08417 120 ALELS-S------D--LDANLLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMNDGELSFELGLPGIPSIAETKEVAKMKE 189 (386)
T ss_pred EEECC-C------C--CCHHHHHHHHHHHHHcCCEEEEeCCCHHHhhHHHHhcChhhHHhCCCCCCHHHHHHHHHHHHH
Confidence 55542 1 1 12345667788899999999877654211 11 123588888877777544
No 372
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=46.72 E-value=3.7e+02 Score=29.48 Aligned_cols=125 Identities=12% Similarity=0.038 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccC
Q 008112 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (577)
Q Consensus 365 ~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~ 444 (577)
-+...|+.+|.++.+- .|....-..+...-..|++.+...+.. .-..+...++...++.++.+..++
T Consensus 76 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~v~~~~~~~-~~~~~~~~~~~a~~l~~~~~~~~~- 142 (454)
T TIGR01137 76 GLALVAAIKGYKCIIV-----------LPEKMSNEKVDVLKALGAEIVRTPTAA-AFDSPESHIGVAKRLVREIPGAHI- 142 (454)
T ss_pred HHHHHHHHcCCeEEEE-----------eCCCcCHHHHHHHHHCCCEEEEcCCcc-CCCchHHHHHHHHHHHHhCCCcEe-
Confidence 4556899999998773 233333334556677999988764321 111222334455555444322221
Q ss_pred CCCCCCCCcccCCChhHHHHHHHHHHHhhcC--c-eEEEEcCChHHHHHHHh----hCCCCeEEEEcCcH
Q 008112 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLG--T-SIVVFTRTGFMAILLSH----YRPSGTIFAFTNEK 507 (577)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~--a-aIiV~T~sG~tA~~is~----~RP~~PIIAvT~~~ 507 (577)
...|.+. . .+..-...-+.++.++++ . .||+..-+|.|+--+++ ++|.+.|+++.+..
T Consensus 143 ~~~~~~~----~-~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~ 207 (454)
T TIGR01137 143 LDQYNNP----S-NPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEG 207 (454)
T ss_pred cccCCCh----h-hHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCC
Confidence 1111111 1 111112233456777764 4 89999999988765554 57999999998854
No 373
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=46.44 E-value=3.7e+02 Score=28.50 Aligned_cols=139 Identities=17% Similarity=0.111 Sum_probs=77.5
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEEEEc-CCCccC-
Q 008112 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVA-RGDLGA- 352 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGImIa-RGDLg~- 352 (577)
....+...+.|+|+|..+...++ +.++...++..- +.+++|-+ .+++|-+.. +|.|=-- .|.-+-
T Consensus 77 ~~Ea~~L~eaGvDiIDaT~r~rP--~~~~~~~iK~~~-~~l~MAD~------stleEal~a~~~Gad~I~TTl~gyT~~~ 147 (283)
T cd04727 77 FVEAQILEALGVDMIDESEVLTP--ADEEHHIDKHKF-KVPFVCGA------RNLGEALRRISEGAAMIRTKGEAGTGNV 147 (283)
T ss_pred HHHHHHHHHcCCCEEeccCCCCc--HHHHHHHHHHHc-CCcEEccC------CCHHHHHHHHHCCCCEEEecCCCCCCcH
Confidence 55666668899999999988888 455555555433 67788744 455555443 3433211 011110
Q ss_pred ----------------CCCCC--cHHH-------HHHHHHHHHHHcCCceE-EEehhhHhhhcCCCCChHhHHHHHHHHH
Q 008112 353 ----------------ELPIE--EVPL-------LQEEIIRTCRSMGKAVI-VATNMLESMIVHPTPTRAEVSDIAIAVR 406 (577)
Q Consensus 353 ----------------elg~e--~v~~-------~qk~Ii~~c~~aGKPvi-~ATq~LeSM~~~~~PtrAEv~Dv~nav~ 406 (577)
..++. ..+. =.+.+-+.+....+|++ +|- ...-|. .++..+..
T Consensus 148 ~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAe--------GGI~Tp---ena~~v~e 216 (283)
T cd04727 148 VEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAA--------GGVATP---ADAALMMQ 216 (283)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEe--------CCCCCH---HHHHHHHH
Confidence 00000 0000 00112222334468987 332 122233 34667778
Q ss_pred hccceEEeccccCCCCCHHHHHHHHHHHHHH
Q 008112 407 EGADAVMLSGETAHGKFPLKAVKVMHTVSLR 437 (577)
Q Consensus 407 ~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~ 437 (577)
.|+|++++.+.-..-..|.+.++.+......
T Consensus 217 ~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 217 LGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred cCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 9999999976655557899999988776654
No 374
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=46.38 E-value=3e+02 Score=27.15 Aligned_cols=119 Identities=15% Similarity=0.131 Sum_probs=60.6
Q ss_pred cCHHHHHHHHhcCCCEEEEcC--CCCHHHHHHHHHHHHhcCCCceEEEee-------cCh--hhHhhHHHHHHh-----c
Q 008112 277 KDWDDIKFGVDNKVDFYAVSF--VKDAQVVHELKNYLKSCGADIHVIVKI-------ESA--DSIPNLHSIITA-----S 340 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~Sf--V~sa~dv~~lr~~l~~~~~~i~IiaKI-------Et~--~gv~NldeIl~~-----s 340 (577)
.+.+|++..++.|+|.|.+.. .++++.+.++.+.+ +.++.+-..+ ..- ..-.+..++++. +
T Consensus 84 ~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~---~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~ 160 (233)
T PRK00748 84 RSLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKF---PGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGV 160 (233)
T ss_pred CCHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHh---CCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCC
Confidence 477888888999999987654 34444555544433 2332211111 100 001122333332 6
Q ss_pred CEEEEc-CCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhc-cceEEec
Q 008112 341 DGAMVA-RGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREG-ADAVMLS 415 (577)
Q Consensus 341 DGImIa-RGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G-~D~imLs 415 (577)
|.+++- +.-=+...|. ++ +.+-+.++....|+|.+..+- +. .|+..+...| +|++|+.
T Consensus 161 ~~ii~~~~~~~g~~~G~-d~----~~i~~l~~~~~ipvia~GGi~---------~~---~di~~~~~~g~~~gv~vg 220 (233)
T PRK00748 161 KAIIYTDISRDGTLSGP-NV----EATRELAAAVPIPVIASGGVS---------SL---DDIKALKGLGAVEGVIVG 220 (233)
T ss_pred CEEEEeeecCcCCcCCC-CH----HHHHHHHHhCCCCEEEeCCCC---------CH---HHHHHHHHcCCccEEEEE
Confidence 765554 3211222231 22 222223445579999865543 44 4455666667 9999986
No 375
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=46.38 E-value=1.1e+02 Score=29.39 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHc-CCceEEEe
Q 008112 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSM-GKAVIVAT 381 (577)
Q Consensus 304 v~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~a-GKPvi~AT 381 (577)
++.+++.+.+.+.++.+.+--+.... +|++++++-.|.|+.+- +. +..+..+...|.++ ++|.|.+.
T Consensus 54 a~~~~~~l~~lnp~v~i~~~~~~~~~-~~~~~~l~~~DlVi~~~---------d~-~~~r~~i~~~~~~~~~ip~i~~~ 121 (174)
T cd01487 54 VEALKENLREINPFVKIEAINIKIDE-NNLEGLFGDCDIVVEAF---------DN-AETKAMLAESLLGNKNKPVVCAS 121 (174)
T ss_pred HHHHHHHHHHHCCCCEEEEEEeecCh-hhHHHHhcCCCEEEECC---------CC-HHHHHHHHHHHHHHCCCCEEEEe
Confidence 66677778888888777665444443 68888888888887762 22 34556677777776 99999864
No 376
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=46.36 E-value=1.1e+02 Score=30.64 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHc-CCceEEEe
Q 008112 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSM-GKAVIVAT 381 (577)
Q Consensus 304 v~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~a-GKPvi~AT 381 (577)
++.+++.+.+.|.++.+-+.-|.... +|++++++-.|.|+-+ .+.. .....+...|.++ ++|++.++
T Consensus 83 a~~a~~~l~~lnp~v~v~~~~~~i~~-~~~~~~~~~~DvVI~a---------~D~~-~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 83 VEALKENLLEINPFVEIEAHNEKIDE-DNIEELFKDCDIVVEA---------FDNA-ETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCH-HHHHHHHcCCCEEEEC---------CCCH-HHHHHHHHHHHHhCCCCEEEee
Confidence 44566777777888777666555544 6788888888888866 2233 3456788899998 99999874
No 377
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=46.21 E-value=1.1e+02 Score=34.21 Aligned_cols=245 Identities=16% Similarity=0.160 Sum_probs=120.4
Q ss_pred eEEEeecCCCeeEEeecCCcEEEcCCCEEEEEEecCCCCceEEeccccccccccCCCCEEEEeCCeEEEEEEEEeCCeEE
Q 008112 168 IAIMLDTKGPEVRSGDLPQPITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVK 247 (577)
Q Consensus 168 i~I~~Dl~GpkiR~g~~~~~i~L~~G~~v~lt~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~v~ 247 (577)
.+.++.-.||..++|++ ..+..|+.+-.... ..++ ..+-+.+. =.+.+++|+.|..-+..+++.|- +.+.
T Consensus 29 ~g~~~~~~g~~~~ige~---~~i~~~~~~~eV~~-~~~~-~~~~~~~~-~~~gi~~g~~v~~~~~~~~v~vg----~~~l 98 (432)
T PRK06793 29 QEQFFVAKGPKAKIGDV---CFVGEHNVLCEVIA-IEKE-NNMLLPFE-QTEKVCYGDSVTLIAEDVVIPRG----NHLL 98 (432)
T ss_pred EEEEEEEEcCCCCcCCE---EEECCCCEEEEEEE-ecCC-cEEEEEcc-CccCCCCCCEEEECCCccEEEcC----Hhhc
Confidence 56788888888888876 34432222111111 1111 12222222 23578899999988777666542 3455
Q ss_pred EEEeeC-cEeccCceeee--CCCCCCCCCCCccCHHHHHHHHhcCCCEE-------------EEcCCCCHHHHHHHHHHH
Q 008112 248 CEVVDG-GELKSRRHLNV--RGKSATLPSITEKDWDDIKFGVDNKVDFY-------------AVSFVKDAQVVHELKNYL 311 (577)
Q Consensus 248 ~~v~~g-G~l~s~Kginl--p~~~~~lp~ltekD~~dI~~al~~gvD~I-------------~~SfV~sa~dv~~lr~~l 311 (577)
-+|.++ |.--..++-.. ...++.-|++..-++..+...++.|+..| ++.--.+..... ++.++
T Consensus 99 GrV~d~~G~piD~~~~~~~~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTtL-l~~Ia 177 (432)
T PRK06793 99 GKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTL-LGMIA 177 (432)
T ss_pred cCEECcCCccCCCCCCCCCcccccccCCCCCchheechhhccCCCCEEEeccceecCCcEEEEECCCCCChHHH-HHHHh
Confidence 555553 44333332211 11233334444444555544444443211 111111221111 22222
Q ss_pred HhcCCCceEEEeecC--hhhHhhHHHHHHh---cC-EEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhH
Q 008112 312 KSCGADIHVIVKIES--ADSIPNLHSIITA---SD-GAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLE 385 (577)
Q Consensus 312 ~~~~~~i~IiaKIEt--~~gv~NldeIl~~---sD-GImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~Le 385 (577)
.....+..+|+-|-. .+.-+.+...+.. .. .++++..|-..-+- .+.+.+.-.+.+..+..|++|.+ +++
T Consensus 178 ~~~~~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r-~ra~~~a~~iAEyfr~~G~~VLl---ilD 253 (432)
T PRK06793 178 KNAKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQ-LRAAKLATSIAEYFRDQGNNVLL---MMD 253 (432)
T ss_pred ccCCCCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHH-HHHHHHHHHHHHHHHHcCCcEEE---Eec
Confidence 223334456665522 2222333434432 11 34554444422211 15666667777778888999988 777
Q ss_pred hhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhcc
Q 008112 386 SMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEAT 441 (577)
Q Consensus 386 SM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~ 441 (577)
||.+...+- +-+. .+.+|...+.||.-....+.++++++...
T Consensus 254 slTr~a~A~--------reis------l~~~e~p~~G~~~~~~s~l~~L~ERag~~ 295 (432)
T PRK06793 254 SVTRFADAR--------RSVD------IAVKELPIGGKTLLMESYMKKLLERSGKT 295 (432)
T ss_pred chHHHHHHH--------HHHH------HHhcCCCCCCeeeeeeccchhHHHHhccC
Confidence 765533332 1111 12367776777776666688888888753
No 378
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=46.15 E-value=1e+02 Score=30.80 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 303 dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
-++.+++.+.+.|.++.+-+--+.. .-+|+++++.-.|.|+.+-.+ +..+..+-+.|+++++|.|.+
T Consensus 76 Ka~~~~~~l~~~np~~~i~~~~~~i-~~~~~~~~~~~~DvVi~~~d~----------~~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 76 KAEAAAERLRAINPDVEIEAYNERL-DAENAEELIAGYDLVLDCTDN----------FATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred HHHHHHHHHHHhCCCCEEEEeccee-CHHHHHHHHhCCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 3556677788888887766544443 346888888889998887322 245667889999999999875
No 379
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=46.00 E-value=3.8e+02 Score=29.58 Aligned_cols=116 Identities=15% Similarity=0.212 Sum_probs=66.4
Q ss_pred HHHHHHHHhcCCCEEEEcCCC-CHHHHHHHHHHHHhcCCCceEEEeecChh-hHhhHHHHHHh-cCEEEE-cCCCccCCC
Q 008112 279 WDDIKFGVDNKVDFYAVSFVK-DAQVVHELKNYLKSCGADIHVIVKIESAD-SIPNLHSIITA-SDGAMV-ARGDLGAEL 354 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~-sa~dv~~lr~~l~~~~~~i~IiaKIEt~~-gv~NldeIl~~-sDGImI-aRGDLg~el 354 (577)
.+.++.+++.|+++|-+.+-. +....+.++++.+.. ....++.-+.... +-..++..++. +|+|.+ +-.|
T Consensus 19 ~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~-~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~v~g~~~----- 92 (430)
T PRK07028 19 VEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNF-PDHTIVADMKTMDTGAIEVEMAAKAGADIVCILGLAD----- 92 (430)
T ss_pred HHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHC-CCCEEEEEeeeccchHHHHHHHHHcCCCEEEEecCCC-----
Confidence 344556688999999663211 244555666655443 2344554322221 33356666665 899886 3211
Q ss_pred CCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 355 PIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 355 g~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
. .--+++++.|+++|.++++-. + ..+|. +..+..+...|+|.+.+.
T Consensus 93 ---~--~~~~~~i~~a~~~G~~~~~g~--~------s~~t~--~e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 93 ---D--STIEDAVRAARKYGVRLMADL--I------NVPDP--VKRAVELEELGVDYINVH 138 (430)
T ss_pred ---h--HHHHHHHHHHHHcCCEEEEEe--c------CCCCH--HHHHHHHHhcCCCEEEEE
Confidence 1 113678899999999988621 0 11232 233566777899999765
No 380
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=45.90 E-value=3e+02 Score=26.98 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=59.4
Q ss_pred HHHHhcCCCEEEEcC----------------CCCHHHHHHHHHHHHhcCCCceEEEeecC----h-hhHhhHHHHHHh-c
Q 008112 283 KFGVDNKVDFYAVSF----------------VKDAQVVHELKNYLKSCGADIHVIVKIES----A-DSIPNLHSIITA-S 340 (577)
Q Consensus 283 ~~al~~gvD~I~~Sf----------------V~sa~dv~~lr~~l~~~~~~i~IiaKIEt----~-~gv~NldeIl~~-s 340 (577)
+.+.+.|+|+|-+.+ .++++-+.++.+.+.+.- .+.+.+|+-. . +.++-+..+.+. +
T Consensus 74 ~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~-~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gv 152 (231)
T cd02801 74 KIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV-PIPVTVKIRLGWDDEEETLELAKALEDAGA 152 (231)
T ss_pred HHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc-CCCEEEEEeeccCCchHHHHHHHHHHHhCC
Confidence 445567999986643 346665666655554332 2567777632 1 222222222222 6
Q ss_pred CEEEEcCCCcc-CCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHh-ccceEEec
Q 008112 341 DGAMVARGDLG-AELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVRE-GADAVMLS 415 (577)
Q Consensus 341 DGImIaRGDLg-~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~-G~D~imLs 415 (577)
|+|.+.-+.-. ...+...+..+ -..++..+.|++....+ -+. .|+..++.. |+|++|+.
T Consensus 153 d~i~v~~~~~~~~~~~~~~~~~~----~~i~~~~~ipvi~~Ggi---------~~~---~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 153 SALTVHGRTREQRYSGPADWDYI----AEIKEAVSIPVIANGDI---------FSL---EDALRCLEQTGVDGVMIG 213 (231)
T ss_pred CEEEECCCCHHHcCCCCCCHHHH----HHHHhCCCCeEEEeCCC---------CCH---HHHHHHHHhcCCCEEEEc
Confidence 77866533210 01111233222 22223457888764332 233 456666776 89999996
No 381
>PRK08198 threonine dehydratase; Provisional
Probab=45.80 E-value=4.3e+02 Score=28.75 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccC
Q 008112 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (577)
Q Consensus 365 ~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~ 444 (577)
-+...|+..|.|+.+.- |.......+...-..|++.+... + . .-++++...+++++- ..++.
T Consensus 84 alA~~a~~~G~~~~iv~-----------p~~~~~~k~~~~~~~GA~Vi~~~-~----~-~~~~~~~a~~~~~~~-g~~~~ 145 (404)
T PRK08198 84 GVAYAASLLGIKATIVM-----------PETAPLSKVKATRSYGAEVVLHG-D----V-YDEALAKAQELAEET-GATFV 145 (404)
T ss_pred HHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHhCCCEEEEEC-C----C-HHHHHHHHHHHHHhc-CCEec
Confidence 45567999999987742 22222333555667899887652 2 2 347777766665542 22221
Q ss_pred CCCCCCCCcccCCChhHHHHHHHHHHHhhcCc--eEEEEcCChHHHH----HHHhhCCCCeEEEEcCcHH
Q 008112 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT--SIVVFTRTGFMAI----LLSHYRPSGTIFAFTNEKR 508 (577)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~a--aIiV~T~sG~tA~----~is~~RP~~PIIAvT~~~~ 508 (577)
. .|.+ ....+...--+.++.++++. .||+..-+|.+.- .+-.+.|...||++-+...
T Consensus 146 ~-~~~~------~~~~~g~~t~a~EI~~q~~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~ 208 (404)
T PRK08198 146 H-PFDD------PDVIAGQGTIGLEILEDLPDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGA 208 (404)
T ss_pred C-CCCC------ccHHHHHHHHHHHHHHhCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 1 1221 11223333345666677653 7888888888654 4445689999999998653
No 382
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=45.38 E-value=1.7e+02 Score=30.45 Aligned_cols=95 Identities=16% Similarity=0.055 Sum_probs=53.0
Q ss_pred hHHHHHHh--cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHH--cC-CceEEEehhhHhhhcCCCCChHhHHHHH-HHH
Q 008112 332 NLHSIITA--SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRS--MG-KAVIVATNMLESMIVHPTPTRAEVSDIA-IAV 405 (577)
Q Consensus 332 NldeIl~~--sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~--aG-KPvi~ATq~LeSM~~~~~PtrAEv~Dv~-nav 405 (577)
.++..++. +||+++. | -.-|...-. .+-++++++.+.+ .| .|+|+-+. ..+-.|..+.+ .|.
T Consensus 26 ~i~~l~~~~Gv~gi~~~-G-stGE~~~Lt-~~Er~~~~~~~~~~~~~~~~viagv~---------~~~~~~ai~~a~~a~ 93 (288)
T cd00954 26 IVDYLIEKQGVDGLYVN-G-STGEGFLLS-VEERKQIAEIVAEAAKGKVTLIAHVG---------SLNLKESQELAKHAE 93 (288)
T ss_pred HHHHHHhcCCCCEEEEC-c-CCcCcccCC-HHHHHHHHHHHHHHhCCCCeEEeccC---------CCCHHHHHHHHHHHH
Confidence 34555555 7899885 2 112222112 2223334443332 23 57765321 22334554444 588
Q ss_pred HhccceEEeccccCCCCCHHHHHHHHHHHHHHH
Q 008112 406 REGADAVMLSGETAHGKFPLKAVKVMHTVSLRT 438 (577)
Q Consensus 406 ~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~a 438 (577)
..|+|++|+..--....-+.+.++....|+..+
T Consensus 94 ~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 94 ELGYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred HcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 999999998654433334578889999998876
No 383
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=45.22 E-value=1.5e+02 Score=29.71 Aligned_cols=94 Identities=19% Similarity=0.288 Sum_probs=53.8
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHH
Q 008112 291 DFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTC 370 (577)
Q Consensus 291 D~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c 370 (577)
..++.|| +.+.++.+++. ..++.+....+... ..++.+.+.....-+++ .....+...+++.+
T Consensus 165 ~v~~~Sf--~~~~l~~~~~~----~p~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~~~i~~~ 227 (263)
T cd08567 165 RVVLQSF--DWRTLQEVRRL----APDIPTVALTEETT-LGNLPRAAKKLGADIWS----------PYFTLVTKELVDEA 227 (263)
T ss_pred ceEEEeC--CHHHHHHHHHH----CCCccEEEEecCCc-ccCHHHHHHHhCCcEEe----------cchhhcCHHHHHHH
Confidence 4566776 45566666543 34455554443321 01333333322111111 12334567899999
Q ss_pred HHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEe
Q 008112 371 RSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (577)
Q Consensus 371 ~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imL 414 (577)
+++|+++++-|- -+ ..+...++..|+|+|+-
T Consensus 228 ~~~G~~v~vwtv----------n~---~~~~~~~~~~Gvdgi~T 258 (263)
T cd08567 228 HALGLKVVPWTV----------ND---PEDMARLIDLGVDGIIT 258 (263)
T ss_pred HHCCCEEEEecC----------CC---HHHHHHHHHcCCCEEEc
Confidence 999999998772 11 23566788999999875
No 384
>PLN03013 cysteine synthase
Probab=45.16 E-value=4.1e+02 Score=29.80 Aligned_cols=122 Identities=14% Similarity=0.084 Sum_probs=70.0
Q ss_pred HHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccCC
Q 008112 366 IIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGG 445 (577)
Q Consensus 366 Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~~ 445 (577)
+...|+..|.++++. .|..+....+...-..|++.+..... .| -.++++...+++++-...++..
T Consensus 190 LA~~a~~~G~~~~Vv-----------vP~~~s~~K~~~ira~GAeVi~v~~~--~~--~~~a~~~A~ela~~~~g~~~~~ 254 (429)
T PLN03013 190 LAFIAASRGYRLILT-----------MPASMSMERRVLLKAFGAELVLTDPA--KG--MTGAVQKAEEILKNTPDAYMLQ 254 (429)
T ss_pred HHHHHHHcCCCEEEE-----------ECCCCcHHHHHHHHHcCCEEEEECCC--CC--hHHHHHHHHHHHhhcCCeEeCC
Confidence 345789999999874 34444445566666799998876322 11 2245666565554422222222
Q ss_pred CCCCCCCcccCCChhHHHHHHHHHHHhhcC--c-eEEEEcCChHHHHH----HHhhCCCCeEEEEcCcHH
Q 008112 446 AMPPNLGQAFKNHMSEMFAYHATMMSNTLG--T-SIVVFTRTGFMAIL----LSHYRPSGTIFAFTNEKR 508 (577)
Q Consensus 446 ~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~--a-aIiV~T~sG~tA~~----is~~RP~~PIIAvT~~~~ 508 (577)
+ |.+ +. + +..-..--+.++.++++ . .+|+..-+|.+..- +-...|.+.||++-+...
T Consensus 255 q-y~N---p~-n-~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs 318 (429)
T PLN03013 255 Q-FDN---PA-N-PKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTES 318 (429)
T ss_pred C-CCC---HH-H-HHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCC
Confidence 2 111 00 0 11011223356666664 4 88889999976544 445579999999999654
No 385
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=45.14 E-value=1.1e+02 Score=31.27 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 303 dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
-++.+++.+.+.|.++.|.+.-+... -+|++++++-.|.|+.+-. . +..+..+-+.|+++++|++.+
T Consensus 87 Ka~~a~~~l~~lnp~v~i~~~~~~i~-~~~~~~~~~~~DiVi~~~D---------~-~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 87 KVESARAALARINPHIAIETINARLD-DDELAALIAGHDLVLDCTD---------N-VATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccCC-HHHHHHHHhcCCEEEecCC---------C-HHHHHHHHHHHHHhCCEEEEe
Confidence 35556666777788877766544433 2578888888998887621 2 246777889999999999875
No 386
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=45.02 E-value=2.6e+02 Score=29.19 Aligned_cols=97 Identities=12% Similarity=0.095 Sum_probs=56.8
Q ss_pred HHHHHHHhcCCCEEEEcC------CCCHHHHHHH-HHHHHhcCCCceEEEeecC---hhhHhhHHHHHHh-cCEEEEcCC
Q 008112 280 DDIKFGVDNKVDFYAVSF------VKDAQVVHEL-KNYLKSCGADIHVIVKIES---ADSIPNLHSIITA-SDGAMVARG 348 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~Sf------V~sa~dv~~l-r~~l~~~~~~i~IiaKIEt---~~gv~NldeIl~~-sDGImIaRG 348 (577)
+.++|.++.|+++|++.= .-|.++=.++ +......+.++.|++-+-. .++++......+. +|++|+.+-
T Consensus 25 ~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP 104 (294)
T TIGR02313 25 ELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVP 104 (294)
T ss_pred HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 456788999999987542 2233333333 4445555667889988753 3455555544444 899999754
Q ss_pred CccCCCCCCcHHHHHHHHHHHHHHc-CCceEEE
Q 008112 349 DLGAELPIEEVPLLQEEIIRTCRSM-GKAVIVA 380 (577)
Q Consensus 349 DLg~elg~e~v~~~qk~Ii~~c~~a-GKPvi~A 380 (577)
..- .... ..+....-..|.+. +.|+++.
T Consensus 105 ~y~-~~~~---~~l~~~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 105 YYN-KPNQ---EALYDHFAEVADAVPDFPIIIY 133 (294)
T ss_pred cCC-CCCH---HHHHHHHHHHHHhccCCCEEEE
Confidence 331 1111 23334444455566 7898874
No 387
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=44.71 E-value=55 Score=34.74 Aligned_cols=62 Identities=11% Similarity=0.168 Sum_probs=48.6
Q ss_pred CHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhH--hhHHHHHHh-cCEEEEcC
Q 008112 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVAR 347 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-sDGImIaR 347 (577)
..+++..+++.|+|.|.+-... +++++++.+.+. .+ .+||---|| +|+.++++. +|.|.+|.
T Consensus 217 sleea~ea~~~gaDiI~LDn~s-~e~~~~av~~~~---~~----~~ieaSGGI~~~ni~~yA~tGVD~Is~ga 281 (296)
T PRK09016 217 NLDELDQALKAGADIIMLDNFT-TEQMREAVKRTN---GR----ALLEVSGNVTLETLREFAETGVDFISVGA 281 (296)
T ss_pred CHHHHHHHHHcCCCEEEeCCCC-hHHHHHHHHhhc---CC----eEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 4788889999999999999874 788888888663 23 246665555 589999988 99999973
No 388
>PLN02979 glycolate oxidase
Probab=44.53 E-value=1.6e+02 Score=32.34 Aligned_cols=91 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcC-
Q 008112 300 DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMG- 374 (577)
Q Consensus 300 sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aG- 374 (577)
+-+|+..+|+.- +.+||.| +|-+.++...+ +|+|.|+-..=.. ....+....-+.+...+.+
T Consensus 211 tW~dl~wlr~~~-----~~PvivK-----gV~~~~dA~~a~~~Gvd~I~VsnhGGrq---ld~~p~t~~~L~ei~~~~~~ 277 (366)
T PLN02979 211 SWKDVQWLQTIT-----KLPILVK-----GVLTGEDARIAIQAGAAGIIVSNHGARQ---LDYVPATISALEEVVKATQG 277 (366)
T ss_pred CHHHHHHHHhcc-----CCCEEee-----cCCCHHHHHHHHhcCCCEEEECCCCcCC---CCCchhHHHHHHHHHHHhCC
Q ss_pred -CceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 375 -KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 375 -KPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
.|+|....+= .-.|++.|+..|+|++++.
T Consensus 278 ~~~Vi~dGGIr------------~G~Di~KALALGAdaV~iG 307 (366)
T PLN02979 278 RIPVFLDGGVR------------RGTDVFKALALGASGIFIG 307 (366)
T ss_pred CCeEEEeCCcC------------cHHHHHHHHHcCCCEEEEc
No 389
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=44.52 E-value=2.5e+02 Score=30.18 Aligned_cols=115 Identities=19% Similarity=0.224 Sum_probs=62.2
Q ss_pred CCCEEEEcC----------CCCHHHHHHHHHHHHhc------CCCceEEEeecChhhHhhHHHHHHh-----cCEEEEcC
Q 008112 289 KVDFYAVSF----------VKDAQVVHELKNYLKSC------GADIHVIVKIESADSIPNLHSIITA-----SDGAMVAR 347 (577)
Q Consensus 289 gvD~I~~Sf----------V~sa~dv~~lr~~l~~~------~~~i~IiaKIEt~~gv~NldeIl~~-----sDGImIaR 347 (577)
.+|++-+.+ -++++.+.++.+.+... ..+++|++|+=---.-+++.++++. +|||.+.=
T Consensus 166 ~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~N 245 (335)
T TIGR01036 166 LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATN 245 (335)
T ss_pred hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEEC
Confidence 489876632 23444555544433221 1138899999533222356666653 78887531
Q ss_pred ----CCc------cCCCC-CC---cHHHHHHHHHHHHHHc--CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccce
Q 008112 348 ----GDL------GAELP-IE---EVPLLQEEIIRTCRSM--GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADA 411 (577)
Q Consensus 348 ----GDL------g~elg-~e---~v~~~qk~Ii~~c~~a--GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~ 411 (577)
.+. +...| +. --+.+.+.+-...+.. ..|+|-+..+. ...|+..++..|||+
T Consensus 246 T~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~------------~~~da~e~l~aGA~~ 313 (335)
T TIGR01036 246 TTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGIS------------SAQDALEKIRAGASL 313 (335)
T ss_pred CCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCC------------CHHHHHHHHHcCCcH
Confidence 010 00111 11 2333444444444444 36777655544 346899999999999
Q ss_pred EEec
Q 008112 412 VMLS 415 (577)
Q Consensus 412 imLs 415 (577)
+++.
T Consensus 314 Vqv~ 317 (335)
T TIGR01036 314 LQIY 317 (335)
T ss_pred HHhh
Confidence 9986
No 390
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=44.48 E-value=65 Score=32.97 Aligned_cols=62 Identities=21% Similarity=0.087 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHhhcCceEEEEcCChHHHHHHHhhCCCCeEEEEcCcHHHhhhhcccCCeeEEEe
Q 008112 460 SEMFAYHATMMSNTLGTSIVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYM 524 (577)
Q Consensus 460 ~~~ia~~a~~~a~~~~aaIiV~T~sG~tA~~is~~RP~~PIIAvT~~~~taR~L~L~~GV~Pvl~ 524 (577)
-..||..|..+-.. .=.+|=.+|.|+..++++-|..++-.+|++..+++.|.=.-++.-+++
T Consensus 80 K~~IA~~Aa~~I~~---g~~Ifld~GsT~~~la~~L~~~~ltVvTnsl~ia~~l~~~~~~~v~l~ 141 (251)
T PRK13509 80 KVRIAKAASQLCNP---GESVVINCGSTAFLLGRELCGKPVQIITNYLPLANYLIDQEHDSVIIM 141 (251)
T ss_pred HHHHHHHHHHhCCC---CCEEEECCcHHHHHHHHHhCCCCeEEEeCCHHHHHHHHhCCCCEEEEE
Confidence 45677666655433 336677799999999999988899999999999998876666654554
No 391
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.36 E-value=29 Score=31.14 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=24.6
Q ss_pred eccccccccccCCCCEEEEeCCeEEEEEEEEe
Q 008112 211 SVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKT 242 (577)
Q Consensus 211 ~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~ 242 (577)
-++++. ...+++||+|.+..+++..+|+++.
T Consensus 25 Rl~d~k-rr~ik~GD~IiF~~~~l~v~V~~vr 55 (111)
T COG4043 25 RLADPK-RRQIKPGDKIIFNGDKLKVEVIDVR 55 (111)
T ss_pred EecCHh-hcCCCCCCEEEEcCCeeEEEEEEEe
Confidence 344544 3689999999999999999998763
No 392
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=44.31 E-value=1.4e+02 Score=26.44 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceE
Q 008112 299 KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVI 378 (577)
Q Consensus 299 ~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi 378 (577)
.|.=-+..+++++++.|-+..|.+ -++..+++.+.-.|.|+++ ..+....+++-+.|...|+||.
T Consensus 12 SSs~la~km~~~a~~~gi~~~i~a-----~~~~e~~~~~~~~Dvill~----------PQv~~~~~~i~~~~~~~~ipv~ 76 (99)
T cd05565 12 TSGLLANALNKGAKERGVPLEAAA-----GAYGSHYDMIPDYDLVILA----------PQMASYYDELKKDTDRLGIKLV 76 (99)
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEE-----eeHHHHHHhccCCCEEEEc----------ChHHHHHHHHHHHhhhcCCCEE
Confidence 444557888999988887766554 3555677777778999986 3688888999999999999998
Q ss_pred EEeh
Q 008112 379 VATN 382 (577)
Q Consensus 379 ~ATq 382 (577)
+-..
T Consensus 77 ~I~~ 80 (99)
T cd05565 77 TTTG 80 (99)
T ss_pred EeCH
Confidence 7443
No 393
>PRK07048 serine/threonine dehydratase; Validated
Probab=44.30 E-value=3.1e+02 Score=28.88 Aligned_cols=118 Identities=13% Similarity=0.121 Sum_probs=67.7
Q ss_pred HHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccC
Q 008112 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (577)
Q Consensus 365 ~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~ 444 (577)
-+...|+..|.|+.+-. |..+.-..+...-..|++.+...+ +..++.+...++.++-. .++.
T Consensus 86 alA~~a~~~G~~~~vvv-----------p~~~~~~k~~~~~~~GAeV~~~~~------~~~~~~~~a~~l~~~~g-~~~~ 147 (321)
T PRK07048 86 AIALSARLLGIPATIVM-----------PQDAPAAKVAATRGYGGEVVTYDR------YTEDREEIGRRLAEERG-LTLI 147 (321)
T ss_pred HHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHCCCEEEEECC------CHHHHHHHHHHHHHhcC-CEEE
Confidence 45568999999987642 222212234555668999887742 23455555444443321 1111
Q ss_pred CCCCCCCCcccCCChhHHHHHHHHHHHhhcCc--eEEEEcCChHHHHHHHhh----CCCCeEEEEcCcH
Q 008112 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT--SIVVFTRTGFMAILLSHY----RPSGTIFAFTNEK 507 (577)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~a--aIiV~T~sG~tA~~is~~----RP~~PIIAvT~~~ 507 (577)
. .+.+. +.......-+.++.++++. .||+..-+|.|.--++++ .|...||++-+..
T Consensus 148 ~-~~~~~------~~~~g~~t~~~EI~~q~~~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~ 209 (321)
T PRK07048 148 P-PYDHP------HVIAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEA 209 (321)
T ss_pred C-CCCCc------chhhccchHHHHHHhhcCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCC
Confidence 1 11110 1111111223456666654 899999999987666655 7999999999864
No 394
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=44.15 E-value=63 Score=34.51 Aligned_cols=62 Identities=10% Similarity=0.168 Sum_probs=46.8
Q ss_pred CHHHHHHHHh------cCCCEEEEcCC--------CCHHHHHHHHHHHHhcCCCceEEEeecChhhH--hhHHHHHHh-c
Q 008112 278 DWDDIKFGVD------NKVDFYAVSFV--------KDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-S 340 (577)
Q Consensus 278 D~~dI~~al~------~gvD~I~~SfV--------~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-s 340 (577)
..++++.+++ .|+|.|.+=.. ++++++++..+.+. .+. .||---|| +|+.++++. +
T Consensus 212 tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~---~~~----~lEaSGGIt~~ni~~yA~tGV 284 (308)
T PLN02716 212 TLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELIN---GRF----ETEASGNVTLDTVHKIGQTGV 284 (308)
T ss_pred CHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhC---CCc----eEEEECCCCHHHHHHHHHcCC
Confidence 5788888999 99999999887 37777777776653 232 26655554 588888887 9
Q ss_pred CEEEEc
Q 008112 341 DGAMVA 346 (577)
Q Consensus 341 DGImIa 346 (577)
|.|-+|
T Consensus 285 D~Is~G 290 (308)
T PLN02716 285 TYISSG 290 (308)
T ss_pred CEEEeC
Confidence 999987
No 395
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=43.98 E-value=2.8e+02 Score=31.20 Aligned_cols=127 Identities=15% Similarity=0.144 Sum_probs=73.8
Q ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEEEEcCCCccC-----
Q 008112 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARGDLGA----- 352 (577)
Q Consensus 282 I~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGImIaRGDLg~----- 352 (577)
.+.|.+.|+|+|-++. +.-.+.++|+.+ +.+..|=. +..+++++..+ +|.|.+|+-.=+.
T Consensus 360 ~~lA~~~~adGvHl~~--~d~~~~~~r~~~---~~~~~iG~------S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~ 428 (502)
T PLN02898 360 VDVALACDADGVHLGQ--SDMPVRLARSLL---GPGKIIGV------SCKTPEQAEQAWKDGADYIGCGGVFPTNTKANN 428 (502)
T ss_pred HHHHHhcCCCEEEeCh--HhcCHHHHHHhc---CCCCEEEE------eCCCHHHHHHHhhcCCCEEEECCeecCCCCCCC
Confidence 3566778899998873 222245555543 33322222 23566666554 7999988642111
Q ss_pred -CCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccc---eEEeccccCCCCCHHHHH
Q 008112 353 -ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGAD---AVMLSGETAHGKFPLKAV 428 (577)
Q Consensus 353 -elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D---~imLs~ETa~G~yP~eaV 428 (577)
.++++.+ +++ +.....|++..-. + +.. ++..+...|+| ++.+.+.-..=..|.+++
T Consensus 429 ~~~g~~~~----~~~---~~~~~~Pv~aiGG-I---------~~~---~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~ 488 (502)
T PLN02898 429 KTIGLDGL----REV---CEASKLPVVAIGG-I---------SAS---NAASVMESGAPNLKGVAVVSALFDQEDVLKAT 488 (502)
T ss_pred CCCCHHHH----HHH---HHcCCCCEEEECC-C---------CHH---HHHHHHHcCCCcCceEEEEeHHhcCCCHHHHH
Confidence 1222222 222 4456789765322 1 222 34456666777 999887766667899999
Q ss_pred HHHHHHHHHHh
Q 008112 429 KVMHTVSLRTE 439 (577)
Q Consensus 429 ~~m~~I~~~aE 439 (577)
+.+.++..+..
T Consensus 489 ~~~~~~~~~~~ 499 (502)
T PLN02898 489 RKLHAILTEAL 499 (502)
T ss_pred HHHHHHHHHHh
Confidence 99888877654
No 396
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=43.97 E-value=3.7e+02 Score=27.39 Aligned_cols=128 Identities=14% Similarity=0.190 Sum_probs=68.1
Q ss_pred cCHHHHHHHHhcCCCEEEEc--CCCCHHHHHHHHHHHHhcCCCceEEEeecChhh-------------------HhhHHH
Q 008112 277 KDWDDIKFGVDNKVDFYAVS--FVKDAQVVHELKNYLKSCGADIHVIVKIESADS-------------------IPNLHS 335 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~S--fV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~g-------------------v~Nlde 335 (577)
.+.+|++..+..|++.+.+. ++++++-+.++.+.. +.+ .|+.-|....+ -.+..+
T Consensus 84 ~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~---~~~-~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~ 159 (254)
T TIGR00735 84 KSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRF---GSQ-CIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVE 159 (254)
T ss_pred CCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHc---CCC-CEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHH
Confidence 46788888888999987765 456666666665544 311 12222221111 112223
Q ss_pred HH----Hh-cCEEEEcCCCccCCC--CCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhc
Q 008112 336 II----TA-SDGAMVARGDLGAEL--PIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREG 408 (577)
Q Consensus 336 Il----~~-sDGImIaRGDLg~el--g~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G 408 (577)
++ +. +|.|.+- |+..+- +-..+.. -+++ ++..+.|+|.+..+- ...|+..+...|
T Consensus 160 ~~~~l~~~G~~~iivt--~i~~~g~~~g~~~~~-~~~i---~~~~~ipvia~GGi~------------s~~di~~~~~~g 221 (254)
T TIGR00735 160 WAKEVEKLGAGEILLT--SMDKDGTKSGYDLEL-TKAV---SEAVKIPVIASGGAG------------KPEHFYEAFTKG 221 (254)
T ss_pred HHHHHHHcCCCEEEEe--CcCcccCCCCCCHHH-HHHH---HHhCCCCEEEeCCCC------------CHHHHHHHHHcC
Confidence 33 22 6888773 222211 1112221 2222 334589999876533 335566777767
Q ss_pred -cceEEeccccCCCCCHHH
Q 008112 409 -ADAVMLSGETAHGKFPLK 426 (577)
Q Consensus 409 -~D~imLs~ETa~G~yP~e 426 (577)
+|++|++.==-.|+++++
T Consensus 222 ~~dgv~~g~a~~~~~~~~~ 240 (254)
T TIGR00735 222 KADAALAASVFHYREITIG 240 (254)
T ss_pred CcceeeEhHHHhCCCCCHH
Confidence 999988532234566644
No 397
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=43.87 E-value=70 Score=32.55 Aligned_cols=64 Identities=20% Similarity=0.065 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHhhcCceEEEEcCChHHHHHHHhhCCCCeEEEEcCcHHHhhhhcccCCeeEEEec
Q 008112 459 MSEMFAYHATMMSNTLGTSIVVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLSLYQGVCPIYME 525 (577)
Q Consensus 459 ~~~~ia~~a~~~a~~~~aaIiV~T~sG~tA~~is~~RP~~PIIAvT~~~~taR~L~L~~GV~Pvl~~ 525 (577)
.-.+||..|.++-..-+ .+|=.+|.|...++++-|..++-++|++..++..|.-.-++.-++..
T Consensus 79 ~K~~IA~~Aa~lI~~gd---~Ifld~GtT~~~l~~~L~~~~ltVvTNs~~ia~~l~~~~~~~vil~G 142 (240)
T PRK10411 79 HKADIAREALAWIEEGM---VIALDASSTCWYLARQLPDINIQVFTNSHPICQELGKRERIQLISSG 142 (240)
T ss_pred HHHHHHHHHHHhCCCCC---EEEEcCcHHHHHHHHhhCCCCeEEEeCCHHHHHHHhcCCCCEEEEEC
Confidence 34577777766655433 55667999999999999887999999999999998877777655543
No 398
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=43.82 E-value=1.2e+02 Score=31.55 Aligned_cols=145 Identities=21% Similarity=0.344 Sum_probs=79.0
Q ss_pred cCHHHHHHHHhcCCCEEEEcC----CC-------CHHHHHHHHHHHHhcCCCceEEEeecCh-hhHh---hHHHHHH-hc
Q 008112 277 KDWDDIKFGVDNKVDFYAVSF----VK-------DAQVVHELKNYLKSCGADIHVIVKIESA-DSIP---NLHSIIT-AS 340 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~Sf----V~-------sa~dv~~lr~~l~~~~~~i~IiaKIEt~-~gv~---NldeIl~-~s 340 (577)
+|+..+...++.|+|++=+.+ +. ..+...++.+.+.+ -.++++++|+=-- .-.. -+....+ -.
T Consensus 112 ~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~-~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~ 190 (295)
T PF01180_consen 112 EDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVRE-AVDIPVFVKLSPNFTDIEPFAIAAELAADGA 190 (295)
T ss_dssp HHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHH-HHSSEEEEEE-STSSCHHHHHHHHHHHTHTE
T ss_pred HHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHh-ccCCCEEEEecCCCCchHHHHHHHHhhccce
Confidence 444444444568899886543 21 12223333333332 2368999998441 1111 2222222 27
Q ss_pred CEEE----EcCCC-ccCCC--C-----------CCcHHHHHHHHHHHHHHcC--CceEEEehhhHhhhcCCCCChHhHHH
Q 008112 341 DGAM----VARGD-LGAEL--P-----------IEEVPLLQEEIIRTCRSMG--KAVIVATNMLESMIVHPTPTRAEVSD 400 (577)
Q Consensus 341 DGIm----IaRGD-Lg~el--g-----------~e~v~~~qk~Ii~~c~~aG--KPvi~ATq~LeSM~~~~~PtrAEv~D 400 (577)
|||. +..++ +-.+. + ..-.+.+.+.+-..++..+ .|+|-.+.+. .-.|
T Consensus 191 ~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~------------s~~d 258 (295)
T PF01180_consen 191 DGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIH------------SGED 258 (295)
T ss_dssp CEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--------------SHHH
T ss_pred eEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcC------------CHHH
Confidence 8887 44444 22221 1 1134677777777777777 8877766654 2368
Q ss_pred HHHHHHhccceEEecccc-CCCCCHHHHHHHHHHHHHHHhc
Q 008112 401 IAIAVREGADAVMLSGET-AHGKFPLKAVKVMHTVSLRTEA 440 (577)
Q Consensus 401 v~nav~~G~D~imLs~ET-a~G~yP~eaV~~m~~I~~~aE~ 440 (577)
+..++..|||+|++..-. -.|. ....+|+++.|+
T Consensus 259 a~e~l~aGA~~Vqv~Sal~~~Gp------~~~~~i~~~L~~ 293 (295)
T PF01180_consen 259 AIEFLMAGASAVQVCSALIYRGP------GVIRRINRELEE 293 (295)
T ss_dssp HHHHHHHTESEEEESHHHHHHGT------THHHHHHHHHHH
T ss_pred HHHHHHhCCCHheechhhhhcCc------HHHHHHHHHHHh
Confidence 999999999999996332 1132 235556665554
No 399
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=43.64 E-value=2.5e+02 Score=28.44 Aligned_cols=105 Identities=18% Similarity=0.252 Sum_probs=75.6
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHH--------
Q 008112 292 FYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQ-------- 363 (577)
Q Consensus 292 ~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~q-------- 363 (577)
.|.+=-..+.++...+.+.+-+.|-. .|=.-.-|+.+.+-|.++.+....++||-|=. +..+.+..+.
T Consensus 15 vI~Vlr~~~~e~a~~~a~Ali~gGi~-~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTV---L~~~q~~~a~~aGa~fiV 90 (211)
T COG0800 15 VVPVIRGDDVEEALPLAKALIEGGIP-AIEITLRTPAALEAIRALAKEFPEALIGAGTV---LNPEQARQAIAAGAQFIV 90 (211)
T ss_pred eeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEecCCCCHHHHHHHHHHhCcccEEccccc---cCHHHHHHHHHcCCCEEE
Confidence 45666678889988888888665543 35556789999999999999888888886632 3333333333
Q ss_pred -----HHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEe
Q 008112 364 -----EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (577)
Q Consensus 364 -----k~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imL 414 (577)
.++++.|+.+|.|++ |--+--+++..|.+.|++++=+
T Consensus 91 sP~~~~ev~~~a~~~~ip~~--------------PG~~TptEi~~Ale~G~~~lK~ 132 (211)
T COG0800 91 SPGLNPEVAKAANRYGIPYI--------------PGVATPTEIMAALELGASALKF 132 (211)
T ss_pred CCCCCHHHHHHHHhCCCccc--------------CCCCCHHHHHHHHHcChhheee
Confidence 689999999999986 2222234477999999998765
No 400
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=43.33 E-value=2.4e+02 Score=27.29 Aligned_cols=106 Identities=11% Similarity=0.055 Sum_probs=60.8
Q ss_pred cCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEEEEcCCCccC
Q 008112 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARGDLGA 352 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGImIaRGDLg~ 352 (577)
.+.++++.+++.|+|+|..|-- -.++.+. .+.. +..++. |+.|++|+.++ +|.|.+-+.+
T Consensus 64 ~~~~~~~~a~~~Ga~~i~~p~~--~~~~~~~---~~~~--~~~~i~------gv~t~~e~~~A~~~Gad~i~~~p~~--- 127 (190)
T cd00452 64 LTPEQADAAIAAGAQFIVSPGL--DPEVVKA---ANRA--GIPLLP------GVATPTEIMQALELGADIVKLFPAE--- 127 (190)
T ss_pred CCHHHHHHHHHcCCCEEEcCCC--CHHHHHH---HHHc--CCcEEC------CcCCHHHHHHHHHCCCCEEEEcCCc---
Confidence 3557788889999999988742 2333333 3332 345555 44466666554 7999885421
Q ss_pred CCCCCcHHHHHHHHHHHHHHc-CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEecccc
Q 008112 353 ELPIEEVPLLQEEIIRTCRSM-GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGET 418 (577)
Q Consensus 353 elg~e~v~~~qk~Ii~~c~~a-GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ET 418 (577)
.. -+...+.+ +... +.|++. +.=. + ..++..+...|+|++.+++-.
T Consensus 128 ---~~-g~~~~~~l---~~~~~~~p~~a-~GGI---------~---~~n~~~~~~~G~~~v~v~s~i 174 (190)
T cd00452 128 ---AV-GPAYIKAL---KGPFPQVRFMP-TGGV---------S---LDNAAEWLAAGVVAVGGGSLL 174 (190)
T ss_pred ---cc-CHHHHHHH---HhhCCCCeEEE-eCCC---------C---HHHHHHHHHCCCEEEEEchhc
Confidence 11 12222222 2222 466554 3222 2 245778888999999987543
No 401
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=43.25 E-value=6e+02 Score=29.64 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=82.0
Q ss_pred HHHHhcCCCEEEE----c----CCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCC
Q 008112 283 KFGVDNKVDFYAV----S----FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAE 353 (577)
Q Consensus 283 ~~al~~gvD~I~~----S----fV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~e 353 (577)
+.++..|+-.++. | -+.+++.+....+......-+.....+.-+ ...+.+.+.++. +.|+-+- .|.+
T Consensus 149 ~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~~pvN~g~~gkG~~-s~~aeL~eli~aGA~GfKi~-ed~g-- 224 (569)
T PRK13308 149 DHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEAWPVNFGFLGRGNS-SKPAALIEQVEAGACGLKIH-EDWG-- 224 (569)
T ss_pred HHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhcCCccEEEEcCCcc-cCHHHHHHHHHCCCCEEeec-CCCC--
Confidence 6788899998874 3 356777787776665543345556665433 334556665544 5566654 2332
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHH
Q 008112 354 LPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 430 (577)
Q Consensus 354 lg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~ 430 (577)
.-+....+.+..|+++|+|+.+-+..|.. -.-+.+ ..+...|...-+.=-|.+-|-+--+.+++
T Consensus 225 ----~t~~~i~~aL~~A~~~dv~VaiHadtlne--------~g~~E~-t~~a~~gr~iH~~H~egaggghapd~l~~ 288 (569)
T PRK13308 225 ----AMPAAIDTCLEVADEYDFQVQLHTDTLNE--------SGFVED-TLAAIGGRTIHMYHTEGAGGGHAPDIIRV 288 (569)
T ss_pred ----CCHHHHHHHHHHHHhcCCEEEEeCCCcCc--------chHHHH-HHHHhcCCeEEEEeccCCccCchhHHHHH
Confidence 24567788889999999999998887643 134444 44555576665555566666664444444
No 402
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=43.02 E-value=4.1e+02 Score=27.66 Aligned_cols=121 Identities=15% Similarity=0.087 Sum_probs=71.4
Q ss_pred HHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccC
Q 008112 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (577)
Q Consensus 365 ~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~ 444 (577)
.+...|+.+|.++++.. |..+........-..|++.+...++ +.| .++.+...++.++-... +.
T Consensus 73 alA~~a~~~G~~~~i~~-----------p~~~~~~k~~~~~~~GA~v~~v~~~---~~~-~~~~~~a~~l~~~~~~~-~~ 136 (290)
T TIGR01138 73 ALAMIAALKGYRMKLLM-----------PDNMSQERKAAMRAYGAELILVTKE---EGM-EGARDLALELANRGEGK-LL 136 (290)
T ss_pred HHHHHHHHcCCeEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHHhCCCC-CC
Confidence 45568999999998753 3433344556677799998887542 122 24555555554432222 21
Q ss_pred CCCCCCCCcccCCChhHHHHHHHHHHHhhcC--c-eEEEEcCChHHHHH----HHhhCCCCeEEEEcCcH
Q 008112 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLG--T-SIVVFTRTGFMAIL----LSHYRPSGTIFAFTNEK 507 (577)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~--a-aIiV~T~sG~tA~~----is~~RP~~PIIAvT~~~ 507 (577)
.+ |.+. .+ +.--...-+.++.++++ . .||+.+-+|.|+.- +..+.|...||++-|..
T Consensus 137 ~~-~~~~----~~-~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~ 200 (290)
T TIGR01138 137 DQ-FNNP----DN-PYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEE 200 (290)
T ss_pred Cc-cCCc----cc-HHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 11 2211 11 11012334557777775 4 78888888887654 44567999999999864
No 403
>PRK08328 hypothetical protein; Provisional
Probab=42.84 E-value=1.4e+02 Score=30.07 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=44.0
Q ss_pred HHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 307 LKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 307 lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
+++.+.+.|.++.|-+--+.. .-+|++++++-.|.|+-+- .. +..+..+-+.|+++|+|++.+
T Consensus 87 a~~~l~~~np~v~v~~~~~~~-~~~~~~~~l~~~D~Vid~~---------d~-~~~r~~l~~~~~~~~ip~i~g 149 (231)
T PRK08328 87 AKWKLERFNSDIKIETFVGRL-SEENIDEVLKGVDVIVDCL---------DN-FETRYLLDDYAHKKGIPLVHG 149 (231)
T ss_pred HHHHHHHhCCCCEEEEEeccC-CHHHHHHHHhcCCEEEECC---------CC-HHHHHHHHHHHHHcCCCEEEE
Confidence 455666778888777644443 3468888888889888762 22 245556677899999998864
No 404
>PLN02565 cysteine synthase
Probab=42.79 E-value=4.1e+02 Score=28.22 Aligned_cols=121 Identities=16% Similarity=0.105 Sum_probs=72.0
Q ss_pred HHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccCC
Q 008112 366 IIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGG 445 (577)
Q Consensus 366 Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~~ 445 (577)
+...|+.+|.|+.+. .|..+....+...-..|++.++...+ ....++++...++.++-...++..
T Consensus 82 lA~~a~~~G~~~~iv-----------vp~~~~~~k~~~i~~~GA~V~~~~~~----~~~~~~~~~a~~l~~~~~~~~~~~ 146 (322)
T PLN02565 82 LAFMAAAKGYKLIIT-----------MPASMSLERRIILLAFGAELVLTDPA----KGMKGAVQKAEEILAKTPNSYILQ 146 (322)
T ss_pred HHHHHHHcCCeEEEE-----------eCCCCcHHHHHHHHHcCCEEEEeCCC----CCcHHHHHHHHHHHHhCCCcEeec
Confidence 345899999998764 45556666677788899998875322 122356666555554321222212
Q ss_pred CCCCCCCcccCCChhHHHHHHHHHHHhhcC--c-eEEEEcCChHHHHH----HHhhCCCCeEEEEcCcH
Q 008112 446 AMPPNLGQAFKNHMSEMFAYHATMMSNTLG--T-SIVVFTRTGFMAIL----LSHYRPSGTIFAFTNEK 507 (577)
Q Consensus 446 ~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~--a-aIiV~T~sG~tA~~----is~~RP~~PIIAvT~~~ 507 (577)
+ |.+.. + +.--..--+.++.++++ . .||+..-+|.+.-- +..++|.+.||++.+..
T Consensus 147 q-~~n~~----n-~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~ 209 (322)
T PLN02565 147 Q-FENPA----N-PKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVE 209 (322)
T ss_pred c-cCCHh----H-HHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 1 22110 0 00012223346666764 4 89998888887644 44557999999999964
No 405
>PLN02550 threonine dehydratase
Probab=42.50 E-value=3.4e+02 Score=31.66 Aligned_cols=160 Identities=13% Similarity=0.106 Sum_probs=89.6
Q ss_pred ceEEEeecChhhHhhH------HHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCC
Q 008112 318 IHVIVKIESADSIPNL------HSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHP 391 (577)
Q Consensus 318 i~IiaKIEt~~gv~Nl------deIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~ 391 (577)
..|+.|.|+.+-.-.+ ..|.+.... -..+|=...+-| . .=.-+...|+..|.++.+.
T Consensus 124 ~~IylK~E~lqptGSFK~RGA~n~I~~L~~e-~~~~GVV~aSaG--N---hAqgvA~aA~~lGika~Iv----------- 186 (591)
T PLN02550 124 VKVLLKREDLQPVFSFKLRGAYNMMAKLPKE-QLDKGVICSSAG--N---HAQGVALSAQRLGCDAVIA----------- 186 (591)
T ss_pred CEEEEEEcCCCCCCcHHHHHHHHHHHHHHHh-cCCCCEEEECCC--H---HHHHHHHHHHHcCCCEEEE-----------
Confidence 4699999998655321 222222111 112221111222 2 2234566799999998764
Q ss_pred CCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccCCChhHHHHHHHHHHH
Q 008112 392 TPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGAMPPNLGQAFKNHMSEMFAYHATMMS 471 (577)
Q Consensus 392 ~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~l~~~~~~~~~~~ia~~a~~~a 471 (577)
.|..+-...+...-..|++.++. |...-++.+...+++++-. ..+.. .|++ ......-..-+.++.
T Consensus 187 mP~~tp~~Kv~~~r~~GAeVvl~------g~~~dea~~~A~~la~e~g-~~fi~-pfdd------p~viaGqgTig~EI~ 252 (591)
T PLN02550 187 MPVTTPEIKWQSVERLGATVVLV------GDSYDEAQAYAKQRALEEG-RTFIP-PFDH------PDVIAGQGTVGMEIV 252 (591)
T ss_pred ECCCCCHHHHHHHHHcCCEEEEe------CCCHHHHHHHHHHHHHhcC-CEEEC-CCCC------hHHHHHHHHHHHHHH
Confidence 23333233455566789987766 2334467777666665422 22111 1211 112233334466777
Q ss_pred hhcC--c-eEEEEcCChHHHHHHH----hhCCCCeEEEEcCcHH
Q 008112 472 NTLG--T-SIVVFTRTGFMAILLS----HYRPSGTIFAFTNEKR 508 (577)
Q Consensus 472 ~~~~--a-aIiV~T~sG~tA~~is----~~RP~~PIIAvT~~~~ 508 (577)
++++ . .|||..-+|.++--++ .++|...||+|-+...
T Consensus 253 eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a 296 (591)
T PLN02550 253 RQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDA 296 (591)
T ss_pred HHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 8775 4 8999998888665444 5679999999999653
No 406
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=42.44 E-value=2.1e+02 Score=29.54 Aligned_cols=98 Identities=16% Similarity=0.134 Sum_probs=57.2
Q ss_pred HHHHHHHhcCCCEEEEc------CCCCHHHHHHHHH-HHHhcCCCceEEEeecC---hhhHhhHHHHHHh-cCEEEEcCC
Q 008112 280 DDIKFGVDNKVDFYAVS------FVKDAQVVHELKN-YLKSCGADIHVIVKIES---ADSIPNLHSIITA-SDGAMVARG 348 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~S------fV~sa~dv~~lr~-~l~~~~~~i~IiaKIEt---~~gv~NldeIl~~-sDGImIaRG 348 (577)
+.+++.++.|+|++.+. +--|.++=.++-+ ..+..+.++.||+.+-. .++++.+...-+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P 105 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPP 105 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEES
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecc
Confidence 44678889999999874 2223344344333 34555678999998754 4444444444333 899998754
Q ss_pred CccCCCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 008112 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (577)
Q Consensus 349 DLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~AT 381 (577)
.+.. ...+.+.. ..-..|.+.++|+++.-
T Consensus 106 ~~~~-~s~~~l~~---y~~~ia~~~~~pi~iYn 134 (289)
T PF00701_consen 106 YYFK-PSQEELID---YFRAIADATDLPIIIYN 134 (289)
T ss_dssp TSSS-CCHHHHHH---HHHHHHHHSSSEEEEEE
T ss_pred cccc-chhhHHHH---HHHHHHhhcCCCEEEEE
Confidence 3321 22233433 44444566889999754
No 407
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=42.28 E-value=55 Score=36.85 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=40.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHH
Q 008112 109 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (577)
Q Consensus 109 ~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 158 (577)
+.++-+-+|+.-.+.+.++.|+++|++++-++-+||..+.+.+.++.+|+
T Consensus 216 ~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 216 RLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred CEEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh
Confidence 45566677765577999999999999999999999998777777777664
No 408
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=42.18 E-value=3.4e+02 Score=27.86 Aligned_cols=141 Identities=20% Similarity=0.225 Sum_probs=87.8
Q ss_pred CccC-HHHHHHHHhc-CCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEe--ecChhhHhhHHHHHHh-----cCEEEE
Q 008112 275 TEKD-WDDIKFGVDN-KVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA-----SDGAMV 345 (577)
Q Consensus 275 tekD-~~dI~~al~~-gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaK--IEt~~gv~NldeIl~~-----sDGImI 345 (577)
++++ .+.++.+.+. ++|+|=+-+-...+++.++.++..+.| .|++- -|.-...+++.+++.. +|.+=|
T Consensus 76 ~~~~~i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~---vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKi 152 (231)
T COG0710 76 SEEEYIELLKKLAELNGPDYIDIELSSPEDDVKEIIKFAKKHG---VIVSYHDFEKTPPLEEIIERLDKMESLGADIVKI 152 (231)
T ss_pred CHHHHHHHHHHHHhhcCCCEEEEEccCcchhHHHHHhccccCC---EEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEE
Confidence 3344 4445555554 599998888777777788877765443 34442 3333344455555543 466665
Q ss_pred cCCCccCCCC--CCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEE--eccccCCC
Q 008112 346 ARGDLGAELP--IEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVM--LSGETAHG 421 (577)
Q Consensus 346 aRGDLg~elg--~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~im--Ls~ETa~G 421 (577)
+ -+| .+++..+-+.....-. +++|+++- ||-+...+|| +++.+. |..... +..-||=|
T Consensus 153 A------vm~~~~~DvL~ll~~~~~~~~-~~~p~i~i-----~MG~~G~~SR-----v~~~~~-GS~~tya~~~~~sAPG 214 (231)
T COG0710 153 A------VMPQSKEDVLDLLEATREFKE-AEKPVITI-----SMGKTGKISR-----VAGPVF-GSPITYASLDKPSAPG 214 (231)
T ss_pred E------ecCCCHHHHHHHHHHHHhccc-cCCCEEEE-----ecCCCCchhh-----hhHhhh-CCceeEeecCCCCCCC
Confidence 4 233 2244444444333323 89999863 7888889999 777665 444444 66789999
Q ss_pred CCHHHHHHHHHHHHH
Q 008112 422 KFPLKAVKVMHTVSL 436 (577)
Q Consensus 422 ~yP~eaV~~m~~I~~ 436 (577)
..+++.++.+..+..
T Consensus 215 Qi~v~~l~~~~~~l~ 229 (231)
T COG0710 215 QISVDELRKILTLLG 229 (231)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999888776653
No 409
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=42.14 E-value=4.4e+02 Score=27.81 Aligned_cols=117 Identities=9% Similarity=0.042 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccC
Q 008112 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (577)
Q Consensus 365 ~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~ 444 (577)
.+...|+..|.|+.+.. |..+.-..+...-..|++.+...+ .| .++.+...+++++- ..++.
T Consensus 81 alA~~a~~~G~~~~v~~-----------p~~~~~~k~~~~~~~GA~V~~~~~-----~~-~~~~~~a~~~~~~~-g~~~~ 142 (317)
T TIGR02991 81 ALAYAAAEEGVRATICM-----------SELVPQNKVDEIRRLGAEVRIVGR-----SQ-DDAQEEVERLVADR-GLTML 142 (317)
T ss_pred HHHHHHHHhCCCEEEEc-----------CCCCCHHHHHHHHHcCCEEEEeCC-----CH-HHHHHHHHHHHHhc-CCEee
Confidence 45668999999998742 222223345556678999887652 23 45666666665432 12211
Q ss_pred CCCCCCCCcccCCChhHHHHHHHHHHHhhcCc--eEEEEcCChHHHHHHHh----hCCCCeEEEEcCc
Q 008112 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT--SIVVFTRTGFMAILLSH----YRPSGTIFAFTNE 506 (577)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~a--aIiV~T~sG~tA~~is~----~RP~~PIIAvT~~ 506 (577)
.+ +.+ ....+....-+.++.++++- .||+..-+|.+.--+++ ++|...|+++-+.
T Consensus 143 ~~-~~n------~~~~~g~~t~a~Ei~~q~~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~ 203 (317)
T TIGR02991 143 PP-FDH------PDIVAGQGTLGLEVVEQMPDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSME 203 (317)
T ss_pred CC-CCC------hHHHhhHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 11 111 12233334455677777753 68998888987766665 4699999999885
No 410
>PRK08329 threonine synthase; Validated
Probab=42.08 E-value=4.6e+02 Score=28.04 Aligned_cols=118 Identities=17% Similarity=0.060 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccC
Q 008112 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (577)
Q Consensus 365 ~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~ 444 (577)
-+...|+++|.++.+. .|..+.-..+...-..|++.+...+ .|. ++.+...++.++-+. ++
T Consensus 118 alA~~aa~~G~~~~v~-----------vp~~~~~~k~~~~~~~GA~v~~v~~-----~~~-~~~~~a~~l~~~~~~--~~ 178 (347)
T PRK08329 118 SLALYSLSEGIKVHVF-----------VSYNASKEKISLLSRLGAELHFVEG-----DRM-EVHEEAVKFSKRNNI--PY 178 (347)
T ss_pred HHHHHHHHcCCcEEEE-----------ECCCChHHHHHHHHHcCCEEEEECC-----CHH-HHHHHHHHHHHhcCC--ee
Confidence 3456788999999875 3444445567777889999888753 344 455555555443221 11
Q ss_pred CCCCCCCCcccCCChhHHHHHHHHHHHhhcCc--eEEEEcCChHHHHHHHhhC----------CCCeEEEEcCcH
Q 008112 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT--SIVVFTRTGFMAILLSHYR----------PSGTIFAFTNEK 507 (577)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~a--aIiV~T~sG~tA~~is~~R----------P~~PIIAvT~~~ 507 (577)
...+.+ +. ..+...--+.++.++++. .||+.+-+|.+..-++++- +...|+++-+..
T Consensus 179 ~~~~~n---p~---~~eG~~t~~~Ei~eql~~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g 247 (347)
T PRK08329 179 VSHWLN---PY---FLEGTKTIAYEIYEQIGVPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEG 247 (347)
T ss_pred ccCCCC---ch---hhccchhHHHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCC
Confidence 111111 11 112222334566677754 8999999999877666433 345688887753
No 411
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=41.93 E-value=76 Score=40.57 Aligned_cols=117 Identities=17% Similarity=0.126 Sum_probs=78.4
Q ss_pred HhcCCCEEEEc---CCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHH-HHHh-cCEEEEcCCCccCCC------
Q 008112 286 VDNKVDFYAVS---FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHS-IITA-SDGAMVARGDLGAEL------ 354 (577)
Q Consensus 286 l~~gvD~I~~S---fV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~Nlde-Il~~-sDGImIaRGDLg~el------ 354 (577)
+..|+|.|.=| -+.|.+|+.++..-|++.+...+|-.|+=...++..+.. ++++ +|.|.|.-+|=|.--
T Consensus 962 ~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~ 1041 (1485)
T PRK11750 962 SVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSV 1041 (1485)
T ss_pred CCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHH
Confidence 44577766432 366889999998889988888899999988778877764 3333 999999866543222
Q ss_pred -----CCC-cHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEe
Q 008112 355 -----PIE-EVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (577)
Q Consensus 355 -----g~e-~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imL 414 (577)
|++ .+.++++.+...=.+....++...++. | -.|++.|+..|||.+-+
T Consensus 1042 ~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~---------t---~~Dv~kA~aLGAd~~~~ 1095 (1485)
T PRK11750 1042 KYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLK---------T---GLDVIKAAILGAESFGF 1095 (1485)
T ss_pred hhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcC---------C---HHHHHHHHHcCCccccc
Confidence 222 355555555444333445555555543 2 27899999999998754
No 412
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=41.92 E-value=2.4e+02 Score=33.64 Aligned_cols=131 Identities=18% Similarity=0.223 Sum_probs=67.4
Q ss_pred CCCccCHHHH--------HHHHhcCCCEEEEcCC-------------C------------CHHHHHHHHHHHHhc-CCCc
Q 008112 273 SITEKDWDDI--------KFGVDNKVDFYAVSFV-------------K------------DAQVVHELKNYLKSC-GADI 318 (577)
Q Consensus 273 ~ltekD~~dI--------~~al~~gvD~I~~SfV-------------~------------sa~dv~~lr~~l~~~-~~~i 318 (577)
.||..|++.+ +.+.+.|+|+|-+..- + ...-+.++.+.+.+. +.+.
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~ 619 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEK 619 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCC
Confidence 5777777665 4567899999966332 1 123344444444443 5677
Q ss_pred eEEEeecChhhHh---hHH---HHHH----h-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHH-cCCceEEEehhhHh
Q 008112 319 HVIVKIESADSIP---NLH---SIIT----A-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRS-MGKAVIVATNMLES 386 (577)
Q Consensus 319 ~IiaKIEt~~gv~---Nld---eIl~----~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~-aGKPvi~ATq~LeS 386 (577)
.|..||-..+-.+ .++ ++++ . +|.|-|..|--..+.....-+..|....+..++ .++||+....+
T Consensus 620 ~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i--- 696 (765)
T PRK08255 620 PMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAI--- 696 (765)
T ss_pred eeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCC---
Confidence 8888875422111 122 2322 2 688888655322111000000122223333333 48898874432
Q ss_pred hhcCCCCChHhHHHHHHHHHhc-cceEEec
Q 008112 387 MIVHPTPTRAEVSDIAIAVREG-ADAVMLS 415 (577)
Q Consensus 387 M~~~~~PtrAEv~Dv~nav~~G-~D~imLs 415 (577)
-+..+ +-.++.+| +|+||+.
T Consensus 697 ------~~~~~---a~~~l~~g~~D~v~~g 717 (765)
T PRK08255 697 ------SEADH---VNSIIAAGRADLCALA 717 (765)
T ss_pred ------CCHHH---HHHHHHcCCcceeeEc
Confidence 23333 44566655 9999984
No 413
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=41.80 E-value=3.5e+02 Score=26.63 Aligned_cols=149 Identities=11% Similarity=0.201 Sum_probs=73.1
Q ss_pred cCHHHHH-HHHhcCCCEEEEcCC-----CCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCC
Q 008112 277 KDWDDIK-FGVDNKVDFYAVSFV-----KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGD 349 (577)
Q Consensus 277 kD~~dI~-~al~~gvD~I~~SfV-----~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGD 349 (577)
.|..++. .-.+.|+|.+.+.-. ....+...+++..+..+-.+.+-.-|-+.+ +++++++. +|.+++++.=
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e---~~~~~~~~Gad~vvigs~~ 105 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRSLE---DIERLLDLGVSRVIIGTAA 105 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHH---HHHHHHHcCCCEEEECchH
Confidence 3544443 444689998877632 233345555554443322233333565543 44555555 8999998653
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHcCC-ceEEEehhhHh--hhcC-CCCChHhHHHHHH-HHHhccceEEeccccCCCCCH
Q 008112 350 LGAELPIEEVPLLQEEIIRTCRSMGK-AVIVATNMLES--MIVH-PTPTRAEVSDIAI-AVREGADAVMLSGETAHGKFP 424 (577)
Q Consensus 350 Lg~elg~e~v~~~qk~Ii~~c~~aGK-Pvi~ATq~LeS--M~~~-~~PtrAEv~Dv~n-av~~G~D~imLs~ETa~G~yP 424 (577)
|. + +...+++ +++.|+ +++++-.+-.+ +... ...+.-+..+.+. +...|+|.+.+.+-+..|.+.
T Consensus 106 l~------d-p~~~~~i---~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~ 175 (234)
T cd04732 106 VK------N-PELVKEL---LKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLS 175 (234)
T ss_pred Hh------C-hHHHHHH---HHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccC
Confidence 31 2 2333333 344565 55554221100 0000 0011112233444 456689999988766666553
Q ss_pred HHHHHHHHHHHHHH
Q 008112 425 LKAVKVMHTVSLRT 438 (577)
Q Consensus 425 ~eaV~~m~~I~~~a 438 (577)
-.-.+.+..+++..
T Consensus 176 g~~~~~i~~i~~~~ 189 (234)
T cd04732 176 GPNFELYKELAAAT 189 (234)
T ss_pred CCCHHHHHHHHHhc
Confidence 33345555555443
No 414
>PRK08639 threonine dehydratase; Validated
Probab=41.73 E-value=3.3e+02 Score=30.01 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=68.8
Q ss_pred HHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccC
Q 008112 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (577)
Q Consensus 365 ~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~ 444 (577)
-+...|+..|.|+.+- .|..+--..+...-..|++.+.+-- .|...-++++.-.+++++-. .++.
T Consensus 87 alA~~a~~~G~~~~Iv-----------mP~~~~~~k~~~~r~~GA~vv~v~~---~g~~~~~a~~~a~~~a~~~g-~~~~ 151 (420)
T PRK08639 87 GVAYACRHLGIPGVIF-----------MPVTTPQQKIDQVRFFGGEFVEIVL---VGDTFDDSAAAAQEYAEETG-ATFI 151 (420)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCChHHHHHHHHHcCCCeeEEEE---eCcCHHHHHHHHHHHHHhcC-Cccc
Confidence 4567899999998774 2333333345566678998533210 24455677766665554421 2211
Q ss_pred CCCCCCCCcccCCChhHHHHHHHHHHHhhcC----c-eEEEEcCChHHHHHHH----hhCCCCeEEEEcCcH
Q 008112 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLG----T-SIVVFTRTGFMAILLS----HYRPSGTIFAFTNEK 507 (577)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~----a-aIiV~T~sG~tA~~is----~~RP~~PIIAvT~~~ 507 (577)
. .|.+ + ...+.-..-+.++.++++ . .||+..-+|.++--++ .++|.+.||++-+..
T Consensus 152 ~-~~~~---~---~~~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~ 216 (420)
T PRK08639 152 P-PFDD---P---DVIAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAG 216 (420)
T ss_pred C-CCCC---h---hHhcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 1 1211 0 111111222456666553 5 7899888887655544 457999999998764
No 415
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=41.61 E-value=5.9e+02 Score=29.15 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=94.5
Q ss_pred CCccCHHHHH-HHHhcCCCEEEEcC-CCCHHHHHHHHHHHHhcC-CCceEEEeecC-hhhHh-----hHHHHHHh-cCE-
Q 008112 274 ITEKDWDDIK-FGVDNKVDFYAVSF-VKDAQVVHELKNYLKSCG-ADIHVIVKIES-ADSIP-----NLHSIITA-SDG- 342 (577)
Q Consensus 274 ltekD~~dI~-~al~~gvD~I~~Sf-V~sa~dv~~lr~~l~~~~-~~i~IiaKIEt-~~gv~-----NldeIl~~-sDG- 342 (577)
++..++..|. .-.+.|+|.|=+.| .-++.|.+.++.... .+ .+..+.+..=. ..++. .++..+.. .|.
T Consensus 24 ~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~-~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g~~~i 102 (524)
T PRK12344 24 FSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKE-LKLKHAKLAAFGSTRRAGVSAEEDPNLQALLDAGTPVV 102 (524)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHH-hCCCCcEEEEEeeccccCCCcccHHHHHHHHhCCCCEE
Confidence 4555555554 44568999998855 457778777766543 22 34444443211 12221 22333333 453
Q ss_pred -EEEcCCCcc----CCCCCCcHHHHHHHHHHHHHHcCCceEEEeh-hhHhhhcCCCCChHhHHHHHH-HHHhccceEEec
Q 008112 343 -AMVARGDLG----AELPIEEVPLLQEEIIRTCRSMGKAVIVATN-MLESMIVHPTPTRAEVSDIAI-AVREGADAVMLS 415 (577)
Q Consensus 343 -ImIaRGDLg----~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq-~LeSM~~~~~PtrAEv~Dv~n-av~~G~D~imLs 415 (577)
+++.-.|+- ..+..+++...-++.++.++++|..+-+.+. +.+ ..+-+..-+.+++. +...|+|.+.|.
T Consensus 103 ~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~D----a~r~d~~~l~~~~~~~~~~Gad~i~l~ 178 (524)
T PRK12344 103 TIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFD----GYKANPEYALATLKAAAEAGADWVVLC 178 (524)
T ss_pred EEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccc----cccCCHHHHHHHHHHHHhCCCCeEEEc
Confidence 344433431 1223345666777889999999998765321 112 12223444555555 456799999985
Q ss_pred cccCCCCCHHHHHHHHHHHHHHH
Q 008112 416 GETAHGKFPLKAVKVMHTVSLRT 438 (577)
Q Consensus 416 ~ETa~G~yP~eaV~~m~~I~~~a 438 (577)
+|.=.-+|.+.-+++..+.+..
T Consensus 179 -DTvG~~~P~~v~~li~~l~~~~ 200 (524)
T PRK12344 179 -DTNGGTLPHEVAEIVAEVRAAP 200 (524)
T ss_pred -cCCCCcCHHHHHHHHHHHHHhc
Confidence 8988899999999998888776
No 416
>PRK08526 threonine dehydratase; Provisional
Probab=41.52 E-value=4e+02 Score=29.35 Aligned_cols=119 Identities=11% Similarity=0.072 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccC
Q 008112 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (577)
Q Consensus 365 ~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~ 444 (577)
-+...|+..|.|+.+- .|..+....+...-..|++.++. |...-++++...+++++-. ..+.
T Consensus 82 avA~aa~~~Gi~~~Iv-----------mP~~~p~~k~~~~r~~GA~Vv~~------g~~~~~a~~~a~~~a~~~g-~~~v 143 (403)
T PRK08526 82 GVAISAKKFGIKAVIV-----------MPEATPLLKVSGTKALGAEVILK------GDNYDEAYAFALEYAKENN-LTFI 143 (403)
T ss_pred HHHHHHHHcCCCEEEE-----------EcCCCCHHHHHHHHhCCCEEEEE------CCCHHHHHHHHHHHHHhcC-CEee
Confidence 4566899999998763 23333344455677789988764 2345677777666554422 1111
Q ss_pred CCCCCCCCcccCCChhHHHHHHHHHHHhhcCc--eEEEEcCChHHHHHH----HhhCCCCeEEEEcCcHH
Q 008112 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT--SIVVFTRTGFMAILL----SHYRPSGTIFAFTNEKR 508 (577)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~a--aIiV~T~sG~tA~~i----s~~RP~~PIIAvT~~~~ 508 (577)
. .|.+ .........-+.++.++++. .||+..-+|.++--+ ...+|.+.||++-+...
T Consensus 144 ~-p~~~------~~~i~G~gtia~EI~eq~~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~ 206 (403)
T PRK08526 144 H-PFED------EEVMAGQGTIALEMLDEISDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGA 206 (403)
T ss_pred C-CCCC------HHHHhhhHHHHHHHHHhcCCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 1 1111 01222223335677777653 889988888765444 45579999999998643
No 417
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=41.47 E-value=2.4e+02 Score=29.78 Aligned_cols=97 Identities=18% Similarity=0.151 Sum_probs=57.5
Q ss_pred HHHHHHHhcCCCEEEEc------CCCCHHHHHHHH-HHHHhcCCCceEEEeec---ChhhHhhHHHHHHh-cCEEEEcCC
Q 008112 280 DDIKFGVDNKVDFYAVS------FVKDAQVVHELK-NYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVARG 348 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~S------fV~sa~dv~~lr-~~l~~~~~~i~IiaKIE---t~~gv~NldeIl~~-sDGImIaRG 348 (577)
+.++|.++.|+|+|.+. +--|.++=.++- ...+..+.++++|+-+= |.++++....--+. +||+|+-+-
T Consensus 29 ~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~P 108 (299)
T COG0329 29 RLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPP 108 (299)
T ss_pred HHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 44578889999998763 334555555554 44455677888999763 34444444444434 999998643
Q ss_pred CccCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 349 DLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
.+-- .+.+.+...-+.|.+ +.+.|+|+.
T Consensus 109 yY~k-~~~~gl~~hf~~ia~---a~~lPvilY 136 (299)
T COG0329 109 YYNK-PSQEGLYAHFKAIAE---AVDLPVILY 136 (299)
T ss_pred CCcC-CChHHHHHHHHHHHH---hcCCCEEEE
Confidence 3311 112344444455544 448998874
No 418
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=41.24 E-value=6e+02 Score=29.10 Aligned_cols=168 Identities=18% Similarity=0.183 Sum_probs=91.7
Q ss_pred CceeeeCCCCCCCCCCCccCHHHHHHH-HhcCCCEEEEcCC-CCHHHHHHHHHHHHhcCC----CceEEEeecC--hhhH
Q 008112 259 RRHLNVRGKSATLPSITEKDWDDIKFG-VDNKVDFYAVSFV-KDAQVVHELKNYLKSCGA----DIHVIVKIES--ADSI 330 (577)
Q Consensus 259 ~Kginlp~~~~~lp~ltekD~~dI~~a-l~~gvD~I~~SfV-~sa~dv~~lr~~l~~~~~----~i~IiaKIEt--~~gv 330 (577)
|-|-..||..+ |..++..|... .+.|+|.|=+.|- .++++.+.++.+...... .....++|-. +---
T Consensus 93 RDGeQ~~gv~f-----s~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~ 167 (503)
T PLN03228 93 RDGEQSPGGSL-----TPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKK 167 (503)
T ss_pred CCCCCCCCCCC-----CHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCH
Confidence 44445555543 55565555544 5689999977654 456666666555432211 0011122210 0001
Q ss_pred hhHHHHHHh-----cCEE--EEcCCCccCC----CCCCcHHHHHHHHHHHHHHcCCc-eEEEehhhHhhhcCCCCChHhH
Q 008112 331 PNLHSIITA-----SDGA--MVARGDLGAE----LPIEEVPLLQEEIIRTCRSMGKA-VIVATNMLESMIVHPTPTRAEV 398 (577)
Q Consensus 331 ~NldeIl~~-----sDGI--mIaRGDLg~e----lg~e~v~~~qk~Ii~~c~~aGKP-vi~ATq~LeSM~~~~~PtrAEv 398 (577)
+.+|..++. .|.| +++-.|+-.+ ...+++.....+.++.++.+|.. +.+..+ ...+-...-+
T Consensus 168 ~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~E------Da~Rtd~efl 241 (503)
T PLN03228 168 RDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCE------DGGRSDKEFL 241 (503)
T ss_pred hhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccc------cccccCHHHH
Confidence 134444333 2333 4444443321 22335556667888999999975 444322 1112223334
Q ss_pred HHHH-HHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHH
Q 008112 399 SDIA-IAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRT 438 (577)
Q Consensus 399 ~Dv~-nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~a 438 (577)
.+++ .+...|+|.|.|. +|.=.-.|.+.-+.+..+.+..
T Consensus 242 ~~~~~~a~~~Gad~I~l~-DTvG~~tP~~v~~lV~~l~~~~ 281 (503)
T PLN03228 242 CKILGEAIKAGATSVGIA-DTVGINMPHEFGELVTYVKANT 281 (503)
T ss_pred HHHHHHHHhcCCCEEEEe-cCCCCCCHHHHHHHHHHHHHHh
Confidence 4444 3667899999995 8988899999988888886553
No 419
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=41.21 E-value=3.2e+02 Score=29.35 Aligned_cols=125 Identities=13% Similarity=0.172 Sum_probs=66.7
Q ss_pred CCCCccCHHHH--------HHHHhcCCCEEEEcCC-------------CCH------------HHHHHHHHHHHh-cCCC
Q 008112 272 PSITEKDWDDI--------KFGVDNKVDFYAVSFV-------------KDA------------QVVHELKNYLKS-CGAD 317 (577)
Q Consensus 272 p~ltekD~~dI--------~~al~~gvD~I~~SfV-------------~sa------------~dv~~lr~~l~~-~~~~ 317 (577)
..+|..|++.+ +.+.+.|+|+|-+.+. +.. .-+.++.+.+.+ .|.+
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d 219 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD 219 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC
Confidence 46788787776 4566789999966433 222 223333333332 2555
Q ss_pred ceEEEeecChhh---------HhhHHHHHH----h-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHH-HcCCceEEEeh
Q 008112 318 IHVIVKIESADS---------IPNLHSIIT----A-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCR-SMGKAVIVATN 382 (577)
Q Consensus 318 i~IiaKIEt~~g---------v~NldeIl~----~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~-~aGKPvi~ATq 382 (577)
.|..||-..+. .+..-+|++ . .|.|=|..|...-..+ ..+-...+..+ ..++||+....
T Consensus 220 -~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~-----~~~~~~~~~ik~~~~ipvi~~G~ 293 (338)
T cd02933 220 -RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPE-----DQPPDFLDFLRKAFKGPLIAAGG 293 (338)
T ss_pred -ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCccc-----ccchHHHHHHHHHcCCCEEEECC
Confidence 48888853321 122223332 2 6888886665432221 11222222222 34899887543
Q ss_pred hhHhhhcCCCCChHhHHHHHHHHHhc-cceEEec
Q 008112 383 MLESMIVHPTPTRAEVSDIAIAVREG-ADAVMLS 415 (577)
Q Consensus 383 ~LeSM~~~~~PtrAEv~Dv~nav~~G-~D~imLs 415 (577)
+ + ..+...++..| +|+|++.
T Consensus 294 i----------~---~~~a~~~l~~g~~D~V~~g 314 (338)
T cd02933 294 Y----------D---AESAEAALADGKADLVAFG 314 (338)
T ss_pred C----------C---HHHHHHHHHcCCCCEEEeC
Confidence 1 1 22344777776 9999985
No 420
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.18 E-value=66 Score=34.10 Aligned_cols=63 Identities=8% Similarity=0.093 Sum_probs=49.3
Q ss_pred cCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhH--hhHHHHHHh-cCEEEEcC
Q 008112 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVAR 347 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-sDGImIaR 347 (577)
.+.+++..+++.|+|.|.+=.. ++++++++.+.++. + .+||---|| +|+.++++. +|.|.+|.
T Consensus 205 ~tleea~~a~~agaDiImLDnm-spe~l~~av~~~~~---~----~~leaSGGI~~~ni~~yA~tGVD~Is~ga 270 (290)
T PRK06559 205 ESLAAAEEAAAAGADIIMLDNM-SLEQIEQAITLIAG---R----SRIECSGNIDMTTISRFRGLAIDYVSSGS 270 (290)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhcC---c----eEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 4678888999999999999885 88899998887742 3 246655554 588888887 99999874
No 421
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=41.13 E-value=2.1e+02 Score=26.64 Aligned_cols=44 Identities=30% Similarity=0.463 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHhCCcEEEEeccCCChHHH---------HHHHHHHHHHHH
Q 008112 118 PSTNTREMIWKLAEAGMNVARLNMSHGDHASH---------QKVIDLVKEYNA 161 (577)
Q Consensus 118 Ps~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~---------~~~i~~ir~~~~ 161 (577)
+...+.+.+++|.++|.+.+.+++-|++.+.+ .++++.++.+.+
T Consensus 95 ~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 147 (216)
T smart00729 95 PGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLRE 147 (216)
T ss_pred cccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 45668999999999999988888888887655 445666666543
No 422
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=41.04 E-value=2.8e+02 Score=29.03 Aligned_cols=48 Identities=38% Similarity=0.396 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHc-CCceEEEehhhHhhhcCCCCChHhHHHHHH-HHHhccceEEecc
Q 008112 359 VPLLQEEIIRTCRSM-GKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSG 416 (577)
Q Consensus 359 v~~~qk~Ii~~c~~a-GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~n-av~~G~D~imLs~ 416 (577)
-+..-.+|+++.++. ++|+++= -.|.-.++.+++. +...|+|++.+++
T Consensus 152 ~~~~~~~iv~~v~~~~~~Pv~vK----------l~~~~~~~~~~a~~~~~~Gadgi~~~N 201 (299)
T cd02940 152 DPELVEEICRWVREAVKIPVIAK----------LTPNITDIREIARAAKEGGADGVSAIN 201 (299)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEE----------CCCCchhHHHHHHHHHHcCCCEEEEec
Confidence 355667788777654 7898863 2355556666766 5677999999864
No 423
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=41.04 E-value=1.8e+02 Score=25.84 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=37.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChH----------HHHHHHHHHHHHHH
Q 008112 109 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHA----------SHQKVIDLVKEYNA 161 (577)
Q Consensus 109 ~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e----------~~~~~i~~ir~~~~ 161 (577)
..++..+..+...+.+.++.|.+.|++.+++++...+.+ .+.++++.++.+.+
T Consensus 76 ~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 138 (166)
T PF04055_consen 76 GIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKE 138 (166)
T ss_dssp TEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHH
T ss_pred ccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHH
Confidence 444444443444459999999999999999999999987 34455666666653
No 424
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=40.91 E-value=4.1e+02 Score=27.04 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCCEEEEcCC----------CCHHHHHHHHHHHHhcCCCce
Q 008112 280 DDIKFGVDNKVDFYAVSFV----------KDAQVVHELKNYLKSCGADIH 319 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV----------~sa~dv~~lr~~l~~~~~~i~ 319 (577)
+.++.+-+.|.|+|=++.- .+.+++.++++.+.+.|-.+.
T Consensus 20 e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 20 ERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred HHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCce
Confidence 5567788999999977521 147788899999988776544
No 425
>PRK10717 cysteine synthase A; Provisional
Probab=40.57 E-value=4.6e+02 Score=27.63 Aligned_cols=127 Identities=16% Similarity=0.123 Sum_probs=69.1
Q ss_pred HHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccC
Q 008112 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (577)
Q Consensus 365 ~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~ 444 (577)
-+...|+.+|.|+.+-. |....-.-+...-..|++.+...+.. ...|-..++...+++.+.+.....
T Consensus 78 alA~~a~~~G~~~~vv~-----------p~~~~~~k~~~~~~~GA~V~~~~~~~--~~~~~~~~~~a~~~a~~~~~~~~~ 144 (330)
T PRK10717 78 GLALVAAARGYKTVIVM-----------PETQSQEKKDLLRALGAELVLVPAAP--YANPNNYVKGAGRLAEELVASEPN 144 (330)
T ss_pred HHHHHHHHcCCcEEEEe-----------CCCCCHHHHHHHHHcCCEEEEeCCcc--cccccchHHHHHHHHHHHHhhCCC
Confidence 44568899999988742 22222234556777899988775321 111222344444455444321111
Q ss_pred CCCCCCCCcccCCC--hhHHHHHHHHHHHhhcC--c-eEEEEcCChHHHHHHH----hhCCCCeEEEEcCcH
Q 008112 445 GAMPPNLGQAFKNH--MSEMFAYHATMMSNTLG--T-SIVVFTRTGFMAILLS----HYRPSGTIFAFTNEK 507 (577)
Q Consensus 445 ~~~~~~l~~~~~~~--~~~~ia~~a~~~a~~~~--a-aIiV~T~sG~tA~~is----~~RP~~PIIAvT~~~ 507 (577)
..++.+ ...+. ...-...-+.++.++++ . .||+..-+|.++.-++ .++|.+.|+++-+..
T Consensus 145 ~~~~~~---~~~~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~ 213 (330)
T PRK10717 145 GAIWAN---QFDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTG 213 (330)
T ss_pred CeEecC---CCCChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 111110 01111 11112233567777775 4 8888888888765554 457999999998854
No 426
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=40.41 E-value=4.2e+02 Score=27.10 Aligned_cols=118 Identities=17% Similarity=0.195 Sum_probs=61.7
Q ss_pred cCHHHHHHHHhcCCCEEEEcC--CCCHHHHHHHHHHHHhcCCCceEEEeecChhh--------------------HhhHH
Q 008112 277 KDWDDIKFGVDNKVDFYAVSF--VKDAQVVHELKNYLKSCGADIHVIVKIESADS--------------------IPNLH 334 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~Sf--V~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~g--------------------v~Nld 334 (577)
+..+|++..++.|++.|.+.. .++++-+.++ ....+.+. ++.-|..+.+ .+-+.
T Consensus 84 ~s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~---~~~~~~~~-i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~ 159 (258)
T PRK01033 84 KTLEQAKKIFSLGVEKVSINTAALEDPDLITEA---AERFGSQS-VVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAK 159 (258)
T ss_pred CCHHHHHHHHHCCCCEEEEChHHhcCHHHHHHH---HHHhCCCc-EEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHH
Confidence 455778877888999998874 2444444444 43333221 2232332222 12222
Q ss_pred HHHHh-cCEEEEc-CCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHH-Hhccce
Q 008112 335 SIITA-SDGAMVA-RGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAV-REGADA 411 (577)
Q Consensus 335 eIl~~-sDGImIa-RGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav-~~G~D~ 411 (577)
...+. ++.+++- +.-=|..-|+ ++..+ + +.++....|+|.+..+- ...|+..+. ..|+|+
T Consensus 160 ~~~~~g~~~ii~~~i~~~G~~~G~-d~~~i-~---~~~~~~~ipvIasGGv~------------s~eD~~~l~~~~Gvdg 222 (258)
T PRK01033 160 EYEALGAGEILLNSIDRDGTMKGY-DLELL-K---SFRNALKIPLIALGGAG------------SLDDIVEAILNLGADA 222 (258)
T ss_pred HHHHcCCCEEEEEccCCCCCcCCC-CHHHH-H---HHHhhCCCCEEEeCCCC------------CHHHHHHHHHHCCCCE
Confidence 22222 5666653 2111222232 33222 2 23445789999876544 345677777 689999
Q ss_pred EEec
Q 008112 412 VMLS 415 (577)
Q Consensus 412 imLs 415 (577)
+++.
T Consensus 223 Vivg 226 (258)
T PRK01033 223 AAAG 226 (258)
T ss_pred EEEc
Confidence 9874
No 427
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=40.23 E-value=1.6e+02 Score=29.36 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=41.9
Q ss_pred CHHHHHHHHhcCCCEEEEcCCC---CHHHHHHHHHHHHhcCCCceEEEeecChhhH--hhHHHHHHh-cCEEEEcCCC
Q 008112 278 DWDDIKFGVDNKVDFYAVSFVK---DAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVARGD 349 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~SfV~---sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-sDGImIaRGD 349 (577)
..+++..+.+.|+|+|.+ |=. ..+.+++++..+ ..++++++- -|| +|+.+.++. +|++-++.+=
T Consensus 113 t~~E~~~A~~~Gad~vk~-Fpa~~~G~~~l~~l~~~~---~~~ipvvai----GGI~~~n~~~~~~aGa~~vav~s~l 182 (206)
T PRK09140 113 TPTEAFAALRAGAQALKL-FPASQLGPAGIKALRAVL---PPDVPVFAV----GGVTPENLAPYLAAGAAGFGLGSAL 182 (206)
T ss_pred CHHHHHHHHHcCCCEEEE-CCCCCCCHHHHHHHHhhc---CCCCeEEEE----CCCCHHHHHHHHHCCCeEEEEehHh
Confidence 346678889999999987 222 344454444433 224666662 233 799999988 9999887543
No 428
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=40.20 E-value=1.8e+02 Score=29.91 Aligned_cols=98 Identities=19% Similarity=0.192 Sum_probs=56.0
Q ss_pred HHHHHHh-cCEEEEcCCCc--cCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhcc
Q 008112 333 LHSIITA-SDGAMVARGDL--GAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGA 409 (577)
Q Consensus 333 ldeIl~~-sDGImIaRGDL--g~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~ 409 (577)
++-+++. +||+++. |-- +..+..++-..+.+...+.+. ...|+++.+. ...++.=+.-.-.|...|+
T Consensus 27 i~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~gv~--------~~~~~~~~~~a~~a~~~G~ 96 (284)
T cd00950 27 IEFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAGTG--------SNNTAEAIELTKRAEKAGA 96 (284)
T ss_pred HHHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEeccC--------CccHHHHHHHHHHHHHcCC
Confidence 3444443 8999986 322 123333343333333333332 2357665332 1123333344445788999
Q ss_pred ceEEeccccCCCCCHHHHHHHHHHHHHHHhc
Q 008112 410 DAVMLSGETAHGKFPLKAVKVMHTVSLRTEA 440 (577)
Q Consensus 410 D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~ 440 (577)
|++|+..-.-...-+-+.+++.+.|+.....
T Consensus 97 d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~ 127 (284)
T cd00950 97 DAALVVTPYYNKPSQEGLYAHFKAIAEATDL 127 (284)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHhcCCC
Confidence 9999986655555567888999999887553
No 429
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=40.06 E-value=4.4e+02 Score=27.25 Aligned_cols=108 Identities=19% Similarity=0.272 Sum_probs=63.6
Q ss_pred eeeeCCCCCCCCCCCccCHHHHHHHHhcCCCE--EEEcC---------CCCHHHH-----------HHHHHHHHhcCCCc
Q 008112 261 HLNVRGKSATLPSITEKDWDDIKFGVDNKVDF--YAVSF---------VKDAQVV-----------HELKNYLKSCGADI 318 (577)
Q Consensus 261 ginlp~~~~~lp~ltekD~~dI~~al~~gvD~--I~~Sf---------V~sa~dv-----------~~lr~~l~~~~~~i 318 (577)
..-+|-.....|.+. .-.+.++...+.|+|+ +.+|| ++.+.+- -+..+.+++...++
T Consensus 12 ~~li~yi~aG~P~~~-~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~ 90 (258)
T PRK13111 12 KALIPYITAGDPDLE-TSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTI 90 (258)
T ss_pred ccEEEEEeCCCCCHH-HHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 344455555555432 3345566677899998 47788 5554322 11112223233456
Q ss_pred eEEEee--cC--hhhHhhHHHHHHh--cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEE
Q 008112 319 HVIVKI--ES--ADSIPNLHSIITA--SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIV 379 (577)
Q Consensus 319 ~IiaKI--Et--~~gv~NldeIl~~--sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ 379 (577)
+++.+- .. .-|++++-+-++. +||++|. | +|+ +-.+....+|+++|...|.
T Consensus 91 p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip--D----Lp~----ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 91 PIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP--D----LPP----EEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred CEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC--C----CCH----HHHHHHHHHHHHcCCcEEE
Confidence 655543 21 3488877666655 8999995 4 454 3456788899999977664
No 430
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=39.67 E-value=86 Score=33.53 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=38.6
Q ss_pred HHHHHhcCCCEEEEcCCCCH---------------HHHHHHHHHHHhcCCCceEEE--eecChhhHhhHHHHHHhcCEEE
Q 008112 282 IKFGVDNKVDFYAVSFVKDA---------------QVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITASDGAM 344 (577)
Q Consensus 282 I~~al~~gvD~I~~SfV~sa---------------~dv~~lr~~l~~~~~~i~Iia--KIEt~~gv~NldeIl~~sDGIm 344 (577)
++...+.|+|+|.+. -++. .+...+++. .+...+++||+ -|-|.+ .+.++++.+||||
T Consensus 157 ~~~l~~aG~d~i~vh-~Rt~~~~g~~~~~~~~~~~~~~~~i~~v-~~~~~~iPVI~nGgI~s~e---da~~~l~~aDgVm 231 (333)
T PRK11815 157 VDTVAEAGCDTFIVH-ARKAWLKGLSPKENREIPPLDYDRVYRL-KRDFPHLTIEINGGIKTLE---EAKEHLQHVDGVM 231 (333)
T ss_pred HHHHHHhCCCEEEEc-CCchhhcCCCccccccCCCcCHHHHHHH-HHhCCCCeEEEECCcCCHH---HHHHHHhcCCEEE
Confidence 455567899999876 2322 123333332 22223577777 455543 4444455699999
Q ss_pred EcCCCcc
Q 008112 345 VARGDLG 351 (577)
Q Consensus 345 IaRGDLg 351 (577)
||||=|+
T Consensus 232 IGRa~l~ 238 (333)
T PRK11815 232 IGRAAYH 238 (333)
T ss_pred EcHHHHh
Confidence 9999664
No 431
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=39.59 E-value=72 Score=32.40 Aligned_cols=62 Identities=11% Similarity=0.210 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCCEEEEcCCCC--HHHHHHHHHHHHhcCCCceEEE--eecChhhHhhHHHHHHh-cCEEEEcCC
Q 008112 280 DDIKFGVDNKVDFYAVSFVKD--AQVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITA-SDGAMVARG 348 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~s--a~dv~~lr~~l~~~~~~i~Iia--KIEt~~gv~NldeIl~~-sDGImIaRG 348 (577)
+..+...+.|+|+|.++--.. ..|...+++.- .+++||+ -|.|.+ ...+.+.. +|+|||||+
T Consensus 156 ~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~----~~ipVIgnGgI~s~e---da~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 156 ELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS----TELFIIGNNSVTTIE---SAKEMFSYGADMVSVARA 222 (233)
T ss_pred HHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc----CCCEEEEECCcCCHH---HHHHHHHcCCCEEEEcCC
Confidence 334566789999887653322 23555555432 3577887 365553 34444445 999999999
No 432
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=39.47 E-value=84 Score=34.56 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=47.6
Q ss_pred cCHHHHHHHHhcCCCEEEEcCC---------CCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEE
Q 008112 277 KDWDDIKFGVDNKVDFYAVSFV---------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGA 343 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~SfV---------~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGI 343 (577)
-+.+|.+.+++.|+|+|.+|.- .+.+-+.++++.+ +.++.||+= -||.|=.+|+++ +|++
T Consensus 262 ~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~---~~~~~vi~d----GGIr~G~Dv~KALaLGA~~v 334 (383)
T cd03332 262 LHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAV---GDRLTVLFD----SGVRTGADIMKALALGAKAV 334 (383)
T ss_pred CCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHh---cCCCeEEEe----CCcCcHHHHHHHHHcCCCEE
Confidence 3567888899999999999854 2344455555544 446777762 577777777775 8999
Q ss_pred EEcCCCc
Q 008112 344 MVARGDL 350 (577)
Q Consensus 344 mIaRGDL 350 (577)
++||.=|
T Consensus 335 ~iGr~~l 341 (383)
T cd03332 335 LIGRPYA 341 (383)
T ss_pred EEcHHHH
Confidence 9998766
No 433
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=39.34 E-value=45 Score=37.66 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=41.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHH
Q 008112 109 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (577)
Q Consensus 109 ~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 158 (577)
+..+=+-+|.+....+.++.|+++|+++.=|..+||-.+...++++.||+
T Consensus 213 rl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~ 262 (475)
T TIGR01303 213 RLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRA 262 (475)
T ss_pred CceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 34444556777788899999999999999999999998877777777775
No 434
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=39.19 E-value=4.2e+02 Score=28.41 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCce--
Q 008112 301 AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAV-- 377 (577)
Q Consensus 301 a~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPv-- 377 (577)
.+.+..+.+.+.+....+++...+....-++.+..-+.. .+-||+. |-.+|+++=-..-+++++.|+.+|..|
T Consensus 58 ~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEa 133 (307)
T PRK05835 58 IDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMID----ASHHAFEENLELTSKVVKMAHNAGVSVEA 133 (307)
T ss_pred hHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Q ss_pred ------EEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCC-----HHHHHHHHHHHHHHH
Q 008112 378 ------IVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF-----PLKAVKVMHTVSLRT 438 (577)
Q Consensus 378 ------i~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~y-----P~eaV~~m~~I~~~a 438 (577)
+.-..+...-.....-+..|..+.... -|+|++-.|-=|+.|.| |.--...|.+|.+..
T Consensus 134 ElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~--TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~ 203 (307)
T PRK05835 134 ELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKE--SQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT 203 (307)
T ss_pred EecccCCccCCcccccccccCCCHHHHHHHHHh--hCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh
No 435
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=39.15 E-value=1.7e+02 Score=28.30 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=71.6
Q ss_pred CCceeecCCCCcccccccccccccccccccccccccCCCCCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCCC
Q 008112 66 EPEVVPVSPEDVPKRDGEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGD 145 (577)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~ 145 (577)
+.+-.|++|+.-.+|+++|+||.. .|+.. -+||+
T Consensus 25 ~~~~~~lT~~G~~~L~~El~~L~~-----------------------------------~i~~A-----------r~~GD 58 (160)
T PRK06342 25 SPHPNLVTEAGLKALEDQLAQARA-----------------------------------AYEAA-----------QAIED 58 (160)
T ss_pred CCCCceECHHHHHHHHHHHHHHHH-----------------------------------HHHHH-----------HHCCC
Confidence 445578999999999999999861 11111 14555
Q ss_pred hHH---HHHHH-HHHHHHHHhcCCCeeEEEeecCC--CeeEEeecCCcEEE--cCCCEEEEEEe---cCCCCceEEeccc
Q 008112 146 HAS---HQKVI-DLVKEYNAQSKDNVIAIMLDTKG--PEVRSGDLPQPITL--TSGQEFTFTIQ---RGVGSAECVSVNY 214 (577)
Q Consensus 146 ~e~---~~~~i-~~ir~~~~~~~~~~i~I~~Dl~G--pkiR~g~~~~~i~L--~~G~~v~lt~~---~~~~~~~~i~v~~ 214 (577)
..+ -+..+ ..||+..+.+. . +-++|-.. -+++.|.. +.| ..|+..+|+.- ......+.|++..
T Consensus 59 lsEak~~~~~~e~rI~~L~~~L~--~-A~Ii~~~~~~d~V~~Gs~---V~l~~~~~~~~~~~IVg~~Ead~~~g~IS~~S 132 (160)
T PRK06342 59 VNERRRQMARPLRDLRYLAARRR--T-AQLMPDPASTDVVAFGST---VTFSRDDGRVQTYRIVGEDEADPKAGSISYVS 132 (160)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHc--c-CEEECCCCCCCEEEeCcE---EEEEECCCCEEEEEEEChHHhCcCCCcccccC
Confidence 433 22333 45777777765 2 33345433 36666654 434 46677766632 1222345677765
Q ss_pred c--ccccccCCCCEEEEeCCeEEEEEEEE
Q 008112 215 D--DFVNDVEVGDMLLVDGGMMSLLVKSK 241 (577)
Q Consensus 215 ~--~~~~~v~~Gd~I~idDG~i~l~V~~v 241 (577)
| .-+-.-++||.|.+ |...++|.++
T Consensus 133 PlG~ALlGk~vGD~V~v--~~~~~eI~~I 159 (160)
T PRK06342 133 PVARALMGKAVGDVVSV--GGQELEIIAI 159 (160)
T ss_pred HHHHHHcCCCCCCEEEE--CCEEEEEEEe
Confidence 5 12224589999999 5777777765
No 436
>PRK06110 hypothetical protein; Provisional
Probab=38.95 E-value=4.4e+02 Score=27.80 Aligned_cols=117 Identities=12% Similarity=-0.016 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhccccC
Q 008112 365 EIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATITG 444 (577)
Q Consensus 365 ~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~~ 444 (577)
-+...|+..|.++.+-. |..+.. ......-..|++.+.. |....++++...+..++-. .++.
T Consensus 84 alA~~a~~~G~~~~ivv---------p~~~~~--~k~~~i~~~GA~V~~~------~~~~~~~~~~a~~~~~~~~-~~~~ 145 (322)
T PRK06110 84 SVAFAARRHGLAATIVV---------PHGNSV--EKNAAMRALGAELIEH------GEDFQAAREEAARLAAERG-LHMV 145 (322)
T ss_pred HHHHHHHHcCCCEEEEE---------cCCCCH--HHHHHHHHcCCEEEEE------CCCHHHHHHHHHHHHHhcC-CEEc
Confidence 34568999999987742 111211 2234566689997764 2334566666555544321 1221
Q ss_pred CCCCCCCCcccCCChhHHHHHHHHHHHhhcCc--eEEEEcCChHHHHHHH----hhCCCCeEEEEcCcH
Q 008112 445 GAMPPNLGQAFKNHMSEMFAYHATMMSNTLGT--SIVVFTRTGFMAILLS----HYRPSGTIFAFTNEK 507 (577)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~a--aIiV~T~sG~tA~~is----~~RP~~PIIAvT~~~ 507 (577)
.. ++ ....+....-+.++.++++. .||+..-+|.+.--++ .++|...|+++-+..
T Consensus 146 ~~-~~-------~~~~~G~~t~~~Ei~~q~~~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~ 206 (322)
T PRK06110 146 PS-FH-------PDLVRGVATYALELFRAVPDLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAH 206 (322)
T ss_pred CC-CC-------ChHHhccchHHHHHHhhCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCC
Confidence 11 11 11222233345566677653 8899888998777665 467999999999853
No 437
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=38.85 E-value=59 Score=34.36 Aligned_cols=68 Identities=24% Similarity=0.272 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCCEEEEcC------CCCHHHHHHHHHHHHhcCCCceEEEe--ecChhhHhhHHHHHHh--cCEEEEcCC
Q 008112 279 WDDIKFGVDNKVDFYAVSF------VKDAQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA--SDGAMVARG 348 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~Sf------V~sa~dv~~lr~~l~~~~~~i~IiaK--IEt~~gv~NldeIl~~--sDGImIaRG 348 (577)
.+.++...+.|+++|.+-- -+...|-..+++..... +++||+- |.|. +.+.++++. +||||||||
T Consensus 141 ~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~---~d~~~~~~~tg~dgvMigRg 215 (309)
T PF01207_consen 141 IEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSP---EDAERMLEQTGADGVMIGRG 215 (309)
T ss_dssp HHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SH---HHHHHHCCCH-SSEEEESHH
T ss_pred HHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCH---HHHHHHHHhcCCcEEEEchh
Confidence 4555667789999997642 12245555555544332 3888885 4443 334444444 999999998
Q ss_pred Ccc
Q 008112 349 DLG 351 (577)
Q Consensus 349 DLg 351 (577)
=|+
T Consensus 216 al~ 218 (309)
T PF01207_consen 216 ALG 218 (309)
T ss_dssp HCC
T ss_pred hhh
Confidence 664
No 438
>PLN02535 glycolate oxidase
Probab=38.84 E-value=2.5e+02 Score=30.79 Aligned_cols=95 Identities=15% Similarity=0.246 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHhcCCCceEEEe-ecChhhHhhHHHHHHh-cCEEEEc-CCCccCCCCCCcHHHHHHHHHHHHHH--c
Q 008112 299 KDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITA-SDGAMVA-RGDLGAELPIEEVPLLQEEIIRTCRS--M 373 (577)
Q Consensus 299 ~sa~dv~~lr~~l~~~~~~i~IiaK-IEt~~gv~NldeIl~~-sDGImIa-RGDLg~elg~e~v~~~qk~Ii~~c~~--a 373 (577)
-+-++++.+++.. +.+|++| |-+++ ......+. +|+|.+. .| |-.++.. +.....+.+...+ .
T Consensus 210 ~tW~~i~~lr~~~-----~~PvivKgV~~~~---dA~~a~~~GvD~I~vsn~G--Gr~~d~~--~~t~~~L~ev~~av~~ 277 (364)
T PLN02535 210 LSWKDIEWLRSIT-----NLPILIKGVLTRE---DAIKAVEVGVAGIIVSNHG--ARQLDYS--PATISVLEEVVQAVGG 277 (364)
T ss_pred CCHHHHHHHHhcc-----CCCEEEecCCCHH---HHHHHHhcCCCEEEEeCCC--cCCCCCC--hHHHHHHHHHHHHHhc
Confidence 3667777777643 4567777 53432 23333333 8888775 12 2222211 1112222222222 2
Q ss_pred CCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccc
Q 008112 374 GKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGE 417 (577)
Q Consensus 374 GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~E 417 (577)
..|+|....+- --.|++.++..|+|++++..-
T Consensus 278 ~ipVi~dGGIr------------~g~Dv~KALalGA~aV~vGr~ 309 (364)
T PLN02535 278 RVPVLLDGGVR------------RGTDVFKALALGAQAVLVGRP 309 (364)
T ss_pred CCCEEeeCCCC------------CHHHHHHHHHcCCCEEEECHH
Confidence 58888755433 347899999999999998543
No 439
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=38.76 E-value=84 Score=29.89 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHhhcCceEEEEcCChHHHHHHHhhCCCC-eEEEEcCcHHHhhhhcccCCeeEEEe
Q 008112 460 SEMFAYHATMMSNTLGTSIVVFTRTGFMAILLSHYRPSG-TIFAFTNEKRIQQRLSLYQGVCPIYM 524 (577)
Q Consensus 460 ~~~ia~~a~~~a~~~~aaIiV~T~sG~tA~~is~~RP~~-PIIAvT~~~~taR~L~L~~GV~Pvl~ 524 (577)
-+.||..|.++-..-. .||=.+|.|+..++++=|.- ++-.+|++-.++..|.-.-++.=++.
T Consensus 6 K~~IA~~A~~~I~~~~---~Ifld~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~~~~~vi~~ 68 (161)
T PF00455_consen 6 KRAIARKAASLIEDGD---TIFLDSGTTTLELAKYLPDKKNLTVVTNSLPIANELSENPNIEVILL 68 (161)
T ss_pred HHHHHHHHHHhCCCCC---EEEEECchHHHHHHHHhhcCCceEEEECCHHHHHHHHhcCceEEEEe
Confidence 3567776665544422 45556889999999987766 89999999999988887776665554
No 440
>PRK07591 threonine synthase; Validated
Probab=38.59 E-value=4.4e+02 Score=29.15 Aligned_cols=119 Identities=13% Similarity=0.138 Sum_probs=73.6
Q ss_pred HHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHhcccc
Q 008112 364 EEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATIT 443 (577)
Q Consensus 364 k~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~~~~ 443 (577)
..+...|+++|.|+.+.. |..+.-..+...-..|++.+..- |.| -++++.+.+++++-+..++
T Consensus 150 ~alA~~aa~~Gl~~~I~v-----------P~~~~~~k~~~~~~~GA~Vi~v~-----g~~-d~a~~~a~~~~~~~~~~~~ 212 (421)
T PRK07591 150 NSVAAHAARAGLDSCVFI-----------PADLEAGKIVGTLVYGPTLVAVD-----GNY-DDVNRLCSELANEHEGWGF 212 (421)
T ss_pred HHHHHHHHHcCCCEEEEE-----------cCCCCHHHHHHHHHcCCEEEEEC-----CCH-HHHHHHHHHHHHhcCCEEE
Confidence 345668899999998752 33344445677788999988774 345 4677777776654322111
Q ss_pred CCCCCCCCCcccCCChhHHHHHHHHHHHhhcC---c-eEEEEcCChHHHHHHHhh-----------CCCCeEEEEcCc
Q 008112 444 GGAMPPNLGQAFKNHMSEMFAYHATMMSNTLG---T-SIVVFTRTGFMAILLSHY-----------RPSGTIFAFTNE 506 (577)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~ia~~a~~~a~~~~---a-aIiV~T~sG~tA~~is~~-----------RP~~PIIAvT~~ 506 (577)
... + .++....-...+ +.++.++++ . .||+.+-+|.+..-+++. +|...|+++-+.
T Consensus 213 ~n~-~---~~p~~ieG~~Ti---a~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~ 283 (421)
T PRK07591 213 VNI-N---LRPYYAEGSKTL---GYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAE 283 (421)
T ss_pred ecC-C---CCcccccchHHH---HHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecC
Confidence 110 0 001110111233 456777774 3 899999999987666543 688899999986
No 441
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=38.46 E-value=4e+02 Score=26.63 Aligned_cols=133 Identities=20% Similarity=0.124 Sum_probs=70.9
Q ss_pred HHHHHHHHhcCCCEEEEcCCCC---------------HHHHHHHHHHHHhcCCCceEEEeecChhh----HhhHHHHHH-
Q 008112 279 WDDIKFGVDNKVDFYAVSFVKD---------------AQVVHELKNYLKSCGADIHVIVKIESADS----IPNLHSIIT- 338 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~s---------------a~dv~~lr~~l~~~~~~i~IiaKIEt~~g----v~NldeIl~- 338 (577)
.++++.+.+.|+|.|.+++--+ .+.+.+..+++++.|. .+..-+|+.-. .+.+.++++
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~--~v~~~~~~~~~~~~~~~~l~~~~~~ 154 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGL--EVEGSLEDAFGCKTDPEYVLEVAKA 154 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC--eEEEEEEeecCCCCCHHHHHHHHHH
Confidence 6788889999999999988665 3344444445555554 45555554443 222222222
Q ss_pred ---h-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcC--CceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceE
Q 008112 339 ---A-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMG--KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAV 412 (577)
Q Consensus 339 ---~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aG--KPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~i 412 (577)
. +|.|.++ |-.-. -.|.-.++++...++.- .|+.+-++ ...--|- .-...|+..|+|.|
T Consensus 155 ~~~~g~~~i~l~--Dt~G~----~~P~~v~~li~~l~~~~~~~~~~~H~H--------n~~gla~-an~laA~~aG~~~i 219 (265)
T cd03174 155 LEEAGADEISLK--DTVGL----ATPEEVAELVKALREALPDVPLGLHTH--------NTLGLAV-ANSLAALEAGADRV 219 (265)
T ss_pred HHHcCCCEEEec--hhcCC----cCHHHHHHHHHHHHHhCCCCeEEEEeC--------CCCChHH-HHHHHHHHcCCCEE
Confidence 2 6777765 33222 23344455555544433 56665432 1122221 22334788998876
Q ss_pred Eec----cccCCCCCHHHHHH
Q 008112 413 MLS----GETAHGKFPLKAVK 429 (577)
Q Consensus 413 mLs----~ETa~G~yP~eaV~ 429 (577)
=-| || ..|+=|.|.+-
T Consensus 220 d~s~~G~G~-~~Gn~~~e~~~ 239 (265)
T cd03174 220 DGSVNGLGE-RAGNAATEDLV 239 (265)
T ss_pred Eeccccccc-cccCccHHHHH
Confidence 432 22 35666766544
No 442
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=38.34 E-value=81 Score=31.84 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=74.8
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcC-CCceEEEeecChhhHhhHH---------HHHH-------h--c
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCG-ADIHVIVKIESADSIPNLH---------SIIT-------A--S 340 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~-~~i~IiaKIEt~~gv~Nld---------eIl~-------~--s 340 (577)
..++...+.|+|++.+-..-..+-++.+++...+.+ .....+..+.+..+ +++. +.+. . .
T Consensus 71 ~~i~~~~~~gad~itvH~~ag~~~i~~~~~~~~~~~~~~~~~V~~lts~~~-~~l~~~~~~~~~~~~v~~~a~~a~~~g~ 149 (230)
T PRK00230 71 KAVRALAKLGVDMVNVHASGGPRMMKAAREALEPKSRPLLIAVTVLTSMDE-EDLAELGINLSLEEQVLRLAKLAQEAGL 149 (230)
T ss_pred HHHHHHHHcCCCEEEEcccCCHHHHHHHHHHhhccCCCeEEEEEECCCCCH-HHHHhCcCCCCHHHHHHHHHHHHHHcCC
Confidence 355556789999999998777777777777665321 22334445655432 3332 1111 0 2
Q ss_pred CEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccccCC
Q 008112 341 DGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAH 420 (577)
Q Consensus 341 DGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~ETa~ 420 (577)
||+... ..++..+++. +. .....+ |+-.- +...+.-....+.....++..|+|.++..---..
T Consensus 150 dgvv~~---------~~~~~~ir~~----~~--~~~~~v-~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~ 212 (230)
T PRK00230 150 DGVVCS---------AQEAAAIREA----TG--PDFLLV-TPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQ 212 (230)
T ss_pred eEEEeC---------hHHHHHHHhh----cC--CceEEE-cCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccC
Confidence 333332 1122222221 10 111121 22221 1111122233344677899999999998777667
Q ss_pred CCCHHHHHHHHHHHHH
Q 008112 421 GKFPLKAVKVMHTVSL 436 (577)
Q Consensus 421 G~yP~eaV~~m~~I~~ 436 (577)
.+.|.++++.+.+.+.
T Consensus 213 a~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 213 AADPAAAYEAILAEIA 228 (230)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 7889999988877554
No 443
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=38.30 E-value=79 Score=29.82 Aligned_cols=120 Identities=17% Similarity=0.181 Sum_probs=69.4
Q ss_pred HHHHHhcCCCEEEEcCCCCH------HHHHHHHHHHHhcCCCceEEE-eecC--------------hhhHhhHHHHHHh-
Q 008112 282 IKFGVDNKVDFYAVSFVKDA------QVVHELKNYLKSCGADIHVIV-KIES--------------ADSIPNLHSIITA- 339 (577)
Q Consensus 282 I~~al~~gvD~I~~SfV~sa------~dv~~lr~~l~~~~~~i~Iia-KIEt--------------~~gv~NldeIl~~- 339 (577)
++++.+.|+++|-+.+...- .++.++++++.+.|-.+.-+. .... .++++.+.+.++.
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a 80 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLA 80 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHH
Confidence 35677889999887765442 357888998988765533222 1111 2235666666654
Q ss_pred ----cCEEEEcCC--CccCCCC----CCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCCh---HhHHHHHHHHH
Q 008112 340 ----SDGAMVARG--DLGAELP----IEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTR---AEVSDIAIAVR 406 (577)
Q Consensus 340 ----sDGImIaRG--DLg~elg----~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~Ptr---AEv~Dv~nav~ 406 (577)
++.+.+..| +...... ++.+...-+++...|.+.|.-+.+ |.+-.....+. .++.++...+.
T Consensus 81 ~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l-----E~~~~~~~~~~~~~~~~~~~l~~~~ 155 (213)
T PF01261_consen 81 KRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL-----ENHPGPFSETPFSVEEIYRLLEEVD 155 (213)
T ss_dssp HHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE-----E-SSSSSSSEESSHHHHHHHHHHHT
T ss_pred HHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE-----ecccCccccchhhHHHHHHHHhhcC
Confidence 778888866 3322222 224555567788888888866553 44444443344 55555555544
No 444
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=38.14 E-value=53 Score=36.45 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=41.8
Q ss_pred EecCCCCCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHH
Q 008112 114 CTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEY 159 (577)
Q Consensus 114 ~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~ 159 (577)
+.||-.-++.+-+.-|.++|+|+.=|+-|.|+..+..++|+.||+-
T Consensus 244 AaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~ 289 (503)
T KOG2550|consen 244 AAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKET 289 (503)
T ss_pred eccccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhh
Confidence 5577777889999999999999999999999999999999999973
No 445
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=37.98 E-value=69 Score=32.96 Aligned_cols=68 Identities=19% Similarity=0.252 Sum_probs=55.4
Q ss_pred ccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEE
Q 008112 276 EKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAM 344 (577)
Q Consensus 276 ekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGIm 344 (577)
+.|.+.++.=++.|+||+.--++=+++.+.+..+.+...|-+++|++-|=-.....++.-+.+.+ ||-
T Consensus 147 ~~~~~~L~~Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~-Gv~ 214 (274)
T cd00537 147 EEDIKRLKRKVDAGADFIITQLFFDNDAFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLC-GVE 214 (274)
T ss_pred HHHHHHHHHHHHCCCCEEeecccccHHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhh-CCC
Confidence 45777788888999999999999999999999999988887889999876666667776666554 443
No 446
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=37.72 E-value=4.9e+02 Score=27.03 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=83.9
Q ss_pred CCCCccCHHHHHHHHhcCCCEEEEcCC-------------CCHHHHHHHHHHHHhcCCCceEEEeec-------ChhhHh
Q 008112 272 PSITEKDWDDIKFGVDNKVDFYAVSFV-------------KDAQVVHELKNYLKSCGADIHVIVKIE-------SADSIP 331 (577)
Q Consensus 272 p~ltekD~~dI~~al~~gvD~I~~SfV-------------~sa~dv~~lr~~l~~~~~~i~IiaKIE-------t~~gv~ 331 (577)
-.+|-+|.---+.+-+.|+|.|.+..- -+-+++.+--+.+...-....|++=++ -.++++
T Consensus 15 ~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~ 94 (254)
T cd06557 15 VMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALR 94 (254)
T ss_pred EEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHH
Confidence 344778888888888889999875411 122222222222333223344888776 123467
Q ss_pred hHHHHHH-h-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceE----EEehhhHhh---hcCCCCCh---Hh-H
Q 008112 332 NLHSIIT-A-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVI----VATNMLESM---IVHPTPTR---AE-V 398 (577)
Q Consensus 332 NldeIl~-~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi----~ATq~LeSM---~~~~~Ptr---AE-v 398 (577)
|.-.+++ + ++||.|--| ..+...|+++.++|+||+ +--|--..+ ....+ |. .+ +
T Consensus 95 ~a~r~~~~aGa~aVkiEd~------------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~gr-t~~~a~~~i 161 (254)
T cd06557 95 NAARLMKEAGADAVKLEGG------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGK-TEEEAERLL 161 (254)
T ss_pred HHHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccC-CHHHHHHHH
Confidence 7777776 4 889998544 256678888999999987 211111111 11111 22 22 3
Q ss_pred HHHHHHHHhccceEEeccccCCCCCHHHHHHHHHHHHHHHh
Q 008112 399 SDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTE 439 (577)
Q Consensus 399 ~Dv~nav~~G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE 439 (577)
.|.......|+|++.|- |- |. +.+..|+++..
T Consensus 162 ~ra~a~~~AGA~~i~lE-----~v-~~---~~~~~i~~~v~ 193 (254)
T cd06557 162 EDALALEEAGAFALVLE-----CV-PA---ELAKEITEALS 193 (254)
T ss_pred HHHHHHHHCCCCEEEEc-----CC-CH---HHHHHHHHhCC
Confidence 44555778999999994 22 42 45666766664
No 447
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=37.59 E-value=4.6e+02 Score=26.75 Aligned_cols=149 Identities=16% Similarity=0.093 Sum_probs=84.9
Q ss_pred CccCHHH-HHHHHhcCCCEEEEcCC------------CCHHHHHHHHHHHHhcCCCceEEEeecChhh-HhhHHHHHHh-
Q 008112 275 TEKDWDD-IKFGVDNKVDFYAVSFV------------KDAQVVHELKNYLKSCGADIHVIVKIESADS-IPNLHSIITA- 339 (577)
Q Consensus 275 tekD~~d-I~~al~~gvD~I~~SfV------------~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~g-v~NldeIl~~- 339 (577)
+..++.. ++.-.+.|+|.|=+.|. ....+.+.++.+.+. ..+.++.+.+....+ .+.++...+.
T Consensus 20 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~-~~~~~~~~~~~~~~~~~~~i~~a~~~g 98 (263)
T cd07943 20 TLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA-LKQAKLGVLLLPGIGTVDDLKMAADLG 98 (263)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHh-ccCCEEEEEecCCccCHHHHHHHHHcC
Confidence 3444444 44556789999866421 111222333333222 234555554321111 2333333333
Q ss_pred cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHH-HHhccceEEecccc
Q 008112 340 SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIA-VREGADAVMLSGET 418 (577)
Q Consensus 340 sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~na-v~~G~D~imLs~ET 418 (577)
.|.+-+. .+..++. ..++.++.+++.|..+.+.-. +. ..-+..++.+++.. ...|+|.+.| .+|
T Consensus 99 ~~~iri~-------~~~s~~~-~~~~~i~~ak~~G~~v~~~~~----~~--~~~~~~~~~~~~~~~~~~G~d~i~l-~DT 163 (263)
T cd07943 99 VDVVRVA-------THCTEAD-VSEQHIGAARKLGMDVVGFLM----MS--HMASPEELAEQAKLMESYGADCVYV-TDS 163 (263)
T ss_pred CCEEEEE-------echhhHH-HHHHHHHHHHHCCCeEEEEEE----ec--cCCCHHHHHHHHHHHHHcCCCEEEE-cCC
Confidence 6666553 3333443 346688999999998766431 11 23356778777775 4459999999 599
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 008112 419 AHGKFPLKAVKVMHTVSLRTE 439 (577)
Q Consensus 419 a~G~yP~eaV~~m~~I~~~aE 439 (577)
.=.-+|.+.-+.+..+-+...
T Consensus 164 ~G~~~P~~v~~lv~~l~~~~~ 184 (263)
T cd07943 164 AGAMLPDDVRERVRALREALD 184 (263)
T ss_pred CCCcCHHHHHHHHHHHHHhCC
Confidence 989999988888777765543
No 448
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=37.47 E-value=1.1e+02 Score=31.79 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=46.7
Q ss_pred CCCCC-CccCHHHHHHHHhcCCCEEEEcC------CCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHH---h
Q 008112 270 TLPSI-TEKDWDDIKFGVDNKVDFYAVSF------VKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT---A 339 (577)
Q Consensus 270 ~lp~l-tekD~~dI~~al~~gvD~I~~Sf------V~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~---~ 339 (577)
.+..| --++.++++.+++.|++.|.+.. --+.+...++..++ -.+..+|+ |+ |+.+.+++.. .
T Consensus 151 Gle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~i---p~~~~~Is--ES--GI~t~~d~~~l~~~ 223 (247)
T PRK13957 151 GMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFL---PPNIVKVG--ES--GIESRSDLDKFRKL 223 (247)
T ss_pred CCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhC---CCCcEEEE--cC--CCCCHHHHHHHHHh
Confidence 34444 33678899999999999998764 22334444444444 23444555 33 6666555533 3
Q ss_pred cCEEEEcCCCccC
Q 008112 340 SDGAMVARGDLGA 352 (577)
Q Consensus 340 sDGImIaRGDLg~ 352 (577)
+||++||-.-+..
T Consensus 224 ~davLvG~~lm~~ 236 (247)
T PRK13957 224 VDAALIGTYFMEK 236 (247)
T ss_pred CCEEEECHHHhCC
Confidence 8999999655443
No 449
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=37.46 E-value=92 Score=30.86 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=39.5
Q ss_pred CHHHHHHHHhcCCCEEEEcC--------CCCHHHHHHHHHHHHhcCCCceEEE--eecChhhHhhHHHHHHh-cCEEEEc
Q 008112 278 DWDDIKFGVDNKVDFYAVSF--------VKDAQVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITA-SDGAMVA 346 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~Sf--------V~sa~dv~~lr~~l~~~~~~i~Iia--KIEt~~gv~NldeIl~~-sDGImIa 346 (577)
..++++.+.+.|+|+|.+.. .....+...+++..+.. ++++++ -|-|+ +++.++++. +||+++|
T Consensus 128 t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~---~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 128 TLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTP---EQAKKALELGAHAVVVG 202 (221)
T ss_pred CHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCH---HHHHHHHHCCCCEEEEc
Confidence 34567788999999997631 12223344444433322 456665 23332 566677766 8999999
Q ss_pred CC
Q 008112 347 RG 348 (577)
Q Consensus 347 RG 348 (577)
+.
T Consensus 203 sa 204 (221)
T PRK01130 203 GA 204 (221)
T ss_pred hH
Confidence 65
No 450
>TIGR00046 RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA.
Probab=37.27 E-value=1.6e+02 Score=29.97 Aligned_cols=107 Identities=16% Similarity=0.214 Sum_probs=59.8
Q ss_pred ccCCCCEEEEeCC---eEEEEEEEEeCCeEEEEEeeCcEeccC--ceeeeCCCCCCCCCCCccCHHHHHHHHhcCCCEEE
Q 008112 220 DVEVGDMLLVDGG---MMSLLVKSKTEDSVKCEVVDGGELKSR--RHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYA 294 (577)
Q Consensus 220 ~v~~Gd~I~idDG---~i~l~V~~v~~~~v~~~v~~gG~l~s~--Kginlp~~~~~lp~ltekD~~dI~~al~~gvD~I~ 294 (577)
-+++||.|.+-|| ....++.+++++.+.+++...-..... ..+.+ ...+|. .++....|+.+.+.|++-|.
T Consensus 31 R~~~Gd~v~v~~g~g~~~~a~i~~~~~~~~~~~i~~~~~~~~~~~~~i~l---~~al~K-~~~~d~il~katELGv~~i~ 106 (240)
T TIGR00046 31 RLKKGDKLKLLDGDGFIYHCEIKKISKKFVKCELLEGESEKRELPLKIHL---AIVLIK-GKKMEFIIRKLTELGVSKII 106 (240)
T ss_pred cCCCCCEEEEEeCCCCEEEEEEEEEcCCeEEEEEEecccCCCCCCcEEEE---EEeecC-CccHHHHHHHHHHcCCCEEE
Confidence 4588999976543 466788889999988887643222111 11211 123343 45556677889999999764
Q ss_pred EcCCCCH----------HHHHHHHHHHHhcC--CCceEEEeecChhhHh
Q 008112 295 VSFVKDA----------QVVHELKNYLKSCG--ADIHVIVKIESADSIP 331 (577)
Q Consensus 295 ~SfV~sa----------~dv~~lr~~l~~~~--~~i~IiaKIEt~~gv~ 331 (577)
|+...- ....+.++.+.++- ..-..+.+|+.+..++
T Consensus 107 -p~~s~rs~~~~~~~~~~k~~rw~~i~~eA~~Q~~r~~lP~i~~~~~l~ 154 (240)
T TIGR00046 107 -PFNAERSVVKLDIEAIKKLERWQKIAIEAAEQSGRNIVPEIKPPKNLK 154 (240)
T ss_pred -EEEeccceeccCchHHHHHHHHHHHHHHHHHhcCCCCCCEECCcCCHH
Confidence 332221 12344444443321 1123567777665444
No 451
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=37.20 E-value=5.2e+02 Score=27.20 Aligned_cols=117 Identities=16% Similarity=0.193 Sum_probs=58.9
Q ss_pred HHHHhcCCCEEEEcC----------------CCCHHHHHHHHHHHHhcCCCceEEEeec-----Chh-hHhhHHHHHHh-
Q 008112 283 KFGVDNKVDFYAVSF----------------VKDAQVVHELKNYLKSCGADIHVIVKIE-----SAD-SIPNLHSIITA- 339 (577)
Q Consensus 283 ~~al~~gvD~I~~Sf----------------V~sa~dv~~lr~~l~~~~~~i~IiaKIE-----t~~-gv~NldeIl~~- 339 (577)
+.+.+.|+|+|=+.+ .++++-+.++.+.+.+. -++++.+||- +.. .++-+..+.+.
T Consensus 82 ~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~-~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G 160 (319)
T TIGR00737 82 KINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDA-VDIPVTVKIRIGWDDAHINAVEAARIAEDAG 160 (319)
T ss_pred HHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhh-cCCCEEEEEEcccCCCcchHHHHHHHHHHhC
Confidence 344567888885543 22344444444444321 2478999982 221 22222222222
Q ss_pred cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHH-HhccceEEec
Q 008112 340 SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAV-REGADAVMLS 415 (577)
Q Consensus 340 sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav-~~G~D~imLs 415 (577)
+|+|-+....- .-++.. +.....+-...+..++|+|.... .-+. .|+..++ ..|+|++|+.
T Consensus 161 ~d~i~vh~r~~--~~~~~~-~~~~~~i~~i~~~~~ipvi~nGg---------I~~~---~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 161 AQAVTLHGRTR--AQGYSG-EANWDIIARVKQAVRIPVIGNGD---------IFSP---EDAKAMLETTGCDGVMIG 222 (319)
T ss_pred CCEEEEEcccc--cccCCC-chhHHHHHHHHHcCCCcEEEeCC---------CCCH---HHHHHHHHhhCCCEEEEC
Confidence 78887642111 111111 11233333344456799887543 3344 4566666 4789999994
No 452
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=37.17 E-value=1.1e+02 Score=32.83 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCCEEEEcCCC------CHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEEEEcCCC
Q 008112 280 DDIKFGVDNKVDFYAVSFVK------DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARGD 349 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~------sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGImIaRGD 349 (577)
+|...|+++|+++|++|.-- .++-|..+.+.+..-+.++.++.- -||.+=-+|+++ +-||+|||--
T Consensus 235 eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lD----GGVR~G~DVlKALALGAk~VfiGRP~ 310 (363)
T KOG0538|consen 235 EDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLD----GGVRRGTDVLKALALGAKGVFIGRPI 310 (363)
T ss_pred HHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEe----cCcccchHHHHHHhcccceEEecCch
Confidence 44567899999999999742 344455555555555666665542 366666667665 7799999865
Q ss_pred c-cCCC
Q 008112 350 L-GAEL 354 (577)
Q Consensus 350 L-g~el 354 (577)
+ |..+
T Consensus 311 v~gLA~ 316 (363)
T KOG0538|consen 311 VWGLAA 316 (363)
T ss_pred heeecc
Confidence 4 4433
No 453
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=37.05 E-value=63 Score=33.50 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=42.2
Q ss_pred HHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHhcCCCeeEEEeecCCCeeE
Q 008112 124 EMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVR 180 (577)
Q Consensus 124 e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR 180 (577)
+..++|+++|.++.=+|+.-...+++.++...|+.+.+..+ +.|.+|+.-|++.
T Consensus 29 ~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~---~plsIDT~~~~v~ 82 (261)
T PRK07535 29 KLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVD---VPLCIDSPNPAAI 82 (261)
T ss_pred HHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCC---CCEEEeCCCHHHH
Confidence 44667899999999999987667788888888888876544 5578887766654
No 454
>PRK00865 glutamate racemase; Provisional
Probab=36.79 E-value=1.7e+02 Score=29.98 Aligned_cols=122 Identities=18% Similarity=0.238 Sum_probs=64.4
Q ss_pred HHHHhcCCCEEEEcCCCCHH--HHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHH
Q 008112 283 KFGVDNKVDFYAVSFVKDAQ--VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVP 360 (577)
Q Consensus 283 ~~al~~gvD~I~~SfV~sa~--dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~ 360 (577)
++..+.|+|+|+++- +++. -+.++|+.+ +++|+- ||. ++..+-.. ....-|-| |+..--. +-.
T Consensus 61 ~~L~~~g~d~iVIaC-NTa~~~~l~~lr~~~-----~iPvig-i~~--a~~~a~~~-~~~~~igV----LaT~~Ti-~s~ 125 (261)
T PRK00865 61 EFLLEYGVKMLVIAC-NTASAVALPDLRERY-----DIPVVG-IVP--AIKPAAAL-TRNGRIGV----LATPGTV-KSA 125 (261)
T ss_pred HHHHhCCCCEEEEeC-chHHHHHHHHHHHhC-----CCCEEe-eHH--HHHHHHHh-cCCCeEEE----EECHHHh-hch
Confidence 556678999998884 5654 457777643 688999 873 44443221 11222222 1111111 222
Q ss_pred HHHHHHHHHHHHcCCce-EEEehhhHhhhcCCCCC----hHhHHHHHHH-HHhccceEEeccccCCCCCHH
Q 008112 361 LLQEEIIRTCRSMGKAV-IVATNMLESMIVHPTPT----RAEVSDIAIA-VREGADAVMLSGETAHGKFPL 425 (577)
Q Consensus 361 ~~qk~Ii~~c~~aGKPv-i~ATq~LeSM~~~~~Pt----rAEv~Dv~na-v~~G~D~imLs~ETa~G~yP~ 425 (577)
..|+.+-+. . .+.-+ .+.+.-+-.++++.... +..+....+. ..+|+|+++|. +..||.
T Consensus 126 ~y~~~i~~~-~-~~~~v~~~~~~~lv~~ie~g~~~~~~~~~~l~~~l~~l~~~g~d~iILG----CTh~p~ 190 (261)
T PRK00865 126 AYRDLIARF-A-PDCQVESLACPELVPLVEAGILGGPVTLEVLREYLAPLLAAGIDTLVLG----CTHYPL 190 (261)
T ss_pred HHHHHHHHh-C-CCCEEEEecCHHHHHHHhCCCcCCHHHHHHHHHHHHHHhcCCCCEEEEC----CcCHHH
Confidence 334333221 1 12333 35555555566554322 2233344443 46799999997 899995
No 455
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=36.70 E-value=1.1e+02 Score=33.48 Aligned_cols=91 Identities=25% Similarity=0.255 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCEEEE-----------cCCCCHHHHHHHHHHHHhcCCCceEEEe--ecChhhHhhHHHHHHh--cCEE
Q 008112 279 WDDIKFGVDNKVDFYAV-----------SFVKDAQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA--SDGA 343 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~-----------SfV~sa~dv~~lr~~l~~~~~~i~IiaK--IEt~~gv~NldeIl~~--sDGI 343 (577)
.+..+...+.|++++.+ .+.-+-+.+.++++.+ .++++||- |.+ ++..+.+++. +|||
T Consensus 158 vd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~----~~ipviaNGnI~~---~~d~~~~~~~tG~dGV 230 (358)
T KOG2335|consen 158 VDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENV----PDIPVIANGNILS---LEDVERCLKYTGADGV 230 (358)
T ss_pred HHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhC----cCCcEEeeCCcCc---HHHHHHHHHHhCCceE
Confidence 34445567889998876 2222333445555444 23788884 544 4556666663 9999
Q ss_pred EEcCCCccCCCCC-----C-cHHHHHHHHHHHHHHcCCc
Q 008112 344 MVARGDLGAELPI-----E-EVPLLQEEIIRTCRSMGKA 376 (577)
Q Consensus 344 mIaRGDLg~elg~-----e-~v~~~qk~Ii~~c~~aGKP 376 (577)
|.|||-|-...=+ + ..-..-.+-+..|.+++-+
T Consensus 231 M~arglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g~ 269 (358)
T KOG2335|consen 231 MSARGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGGL 269 (358)
T ss_pred EecchhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 9999987433222 1 2334445556677777644
No 456
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=36.60 E-value=2.5e+02 Score=29.06 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=54.2
Q ss_pred HHHHHh-cCEEEEcCCCc--cCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHH-HHHhcc
Q 008112 334 HSIITA-SDGAMVARGDL--GAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGA 409 (577)
Q Consensus 334 deIl~~-sDGImIaRGDL--g~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~n-av~~G~ 409 (577)
+-+++. +||+++. |-- +..+..++-..+-+.+++.+ +-..|+++.+. ..+-.|..+.+. +...|+
T Consensus 29 ~~l~~~Gv~gi~~~-Gs~GE~~~ls~~Er~~~~~~~~~~~-~~~~~vi~gv~---------~~~~~~~i~~a~~a~~~G~ 97 (292)
T PRK03170 29 DYLIANGTDGLVVV-GTTGESPTLTHEEHEELIRAVVEAV-NGRVPVIAGTG---------SNSTAEAIELTKFAEKAGA 97 (292)
T ss_pred HHHHHcCCCEEEEC-CcCCccccCCHHHHHHHHHHHHHHh-CCCCcEEeecC---------CchHHHHHHHHHHHHHcCC
Confidence 334433 8899975 221 12333333333333333433 22367775432 123345555444 566799
Q ss_pred ceEEeccccCCCCCHHHHHHHHHHHHHHHhc
Q 008112 410 DAVMLSGETAHGKFPLKAVKVMHTVSLRTEA 440 (577)
Q Consensus 410 D~imLs~ETa~G~yP~eaV~~m~~I~~~aE~ 440 (577)
|++|+..=.-....+-+.+++...|+..++.
T Consensus 98 d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~ 128 (292)
T PRK03170 98 DGALVVTPYYNKPTQEGLYQHFKAIAEATDL 128 (292)
T ss_pred CEEEECCCcCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999975544444567889999999887753
No 457
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=36.47 E-value=1.3e+02 Score=30.64 Aligned_cols=54 Identities=11% Similarity=0.232 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHH--------HHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQV--------VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA 339 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~d--------v~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~ 339 (577)
.....|.+.|++|| .|||.+.+| +.++.+.+...+.+++|++ .+++|.++++++
T Consensus 117 ~Qa~~Aa~aGa~yv-sPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILa-----AS~r~~~~v~~a 178 (222)
T PRK12656 117 FQGLLAIEAGADYL-APYYNRMENLNIDSNAVIGQLAEAIDRENSDSKILA-----ASFKNVAQVNKA 178 (222)
T ss_pred HHHHHHHHCCCCEE-ecccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEE-----EecCCHHHHHHH
Confidence 34456778999887 599988655 3455555555566677666 466666666653
No 458
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=36.42 E-value=1.6e+02 Score=31.16 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=41.0
Q ss_pred CCcEEEEecCCCCCCH----HHHHHHHHhCCcEEEEeccCCC-----hHHHHHHHHHHHHHHHhcCCCeeEEEeec
Q 008112 108 RKTKIVCTIGPSTNTR----EMIWKLAEAGMNVARLNMSHGD-----HASHQKVIDLVKEYNAQSKDNVIAIMLDT 174 (577)
Q Consensus 108 r~tKIi~TiGPs~~~~----e~l~~li~~Gm~v~RiN~sHg~-----~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl 174 (577)
.+...-+|+|....++ +..+++.++|.+.+.+...|+. .+.-.+.++.+|+ .++ ..+.+++|.
T Consensus 125 ~~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~---~~g-~~~~l~vDa 196 (357)
T cd03316 125 DRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVRE---AVG-PDVDLMVDA 196 (357)
T ss_pred CceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHH---hhC-CCCEEEEEC
Confidence 3455667776654233 3456677899999999999886 5555566666664 444 445666664
No 459
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=36.39 E-value=76 Score=29.75 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=32.8
Q ss_pred EEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 008112 342 GAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (577)
Q Consensus 342 GImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~AT 381 (577)
.+++|--|+....+.+++..-.+.+++.+++.|.++++.|
T Consensus 64 ~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 64 IIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred EEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4566677887777888888888999999999999988754
No 460
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=36.34 E-value=2.8e+02 Score=28.89 Aligned_cols=96 Identities=17% Similarity=0.104 Sum_probs=54.5
Q ss_pred HHHHHH-h-cCEEEEcC--CCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHH-HHHHHh
Q 008112 333 LHSIIT-A-SDGAMVAR--GDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDI-AIAVRE 407 (577)
Q Consensus 333 ldeIl~-~-sDGImIaR--GDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv-~nav~~ 407 (577)
++..++ . +|||+++- |+ +..|..++-..+.+..++.++ -.+|++.-+. .++-.|..+. ..|...
T Consensus 30 i~~l~~~~Gv~gi~v~GstGE-~~~Ls~eEr~~~~~~~~~~~~-~~~~viagvg---------~~~t~~ai~~a~~a~~~ 98 (293)
T PRK04147 30 VRFNIEKQGIDGLYVGGSTGE-AFLLSTEEKKQVLEIVAEEAK-GKVKLIAQVG---------SVNTAEAQELAKYATEL 98 (293)
T ss_pred HHHHHhcCCCCEEEECCCccc-cccCCHHHHHHHHHHHHHHhC-CCCCEEecCC---------CCCHHHHHHHHHHHHHc
Confidence 344454 3 88999861 11 123333444444444444443 2367775431 2334454444 457889
Q ss_pred ccceEEeccccCCCCCHHHHHHHHHHHHHHHh
Q 008112 408 GADAVMLSGETAHGKFPLKAVKVMHTVSLRTE 439 (577)
Q Consensus 408 G~D~imLs~ETa~G~yP~eaV~~m~~I~~~aE 439 (577)
|+|++|+..=--...-+-+.++....|+..+.
T Consensus 99 Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~ 130 (293)
T PRK04147 99 GYDAISAVTPFYYPFSFEEICDYYREIIDSAD 130 (293)
T ss_pred CCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCC
Confidence 99999997533333334677888888888765
No 461
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=36.22 E-value=2.5e+02 Score=30.83 Aligned_cols=91 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcC-
Q 008112 300 DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMG- 374 (577)
Q Consensus 300 sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aG- 374 (577)
+-+|+..+|+.- +.+||.| +|-+.++...+ +|+|.|+-..=. .....+.....+.+...+.+
T Consensus 212 tW~di~wlr~~~-----~~PiivK-----gV~~~~dA~~a~~~Gvd~I~VsnhGGr---qld~~~~t~~~L~ei~~av~~ 278 (367)
T PLN02493 212 SWKDVQWLQTIT-----KLPILVK-----GVLTGEDARIAIQAGAAGIIVSNHGAR---QLDYVPATISALEEVVKATQG 278 (367)
T ss_pred CHHHHHHHHhcc-----CCCEEee-----cCCCHHHHHHHHHcCCCEEEECCCCCC---CCCCchhHHHHHHHHHHHhCC
Q ss_pred -CceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 375 -KAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 375 -KPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
.|+|....+= .-.|++.|+..|+|++++.
T Consensus 279 ~~~vi~dGGIr------------~G~Dv~KALALGA~aV~iG 308 (367)
T PLN02493 279 RIPVFLDGGVR------------RGTDVFKALALGASGIFIG 308 (367)
T ss_pred CCeEEEeCCcC------------cHHHHHHHHHcCCCEEEEc
No 462
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.05 E-value=3.9e+02 Score=26.88 Aligned_cols=106 Identities=16% Similarity=0.149 Sum_probs=64.8
Q ss_pred cCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh----cCEEEEcCCCccC
Q 008112 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARGDLGA 352 (577)
Q Consensus 277 kD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDGImIaRGDLg~ 352 (577)
-+.++.+.+++.|++|+.-|.. +++-+ ++..+ .++..+. |+.+..|+.++ +|.+-+=+++.
T Consensus 76 ~~~~~~~~a~~aGA~FivsP~~-~~~v~----~~~~~--~~i~~iP------G~~T~~E~~~A~~~Gad~vklFPa~~-- 140 (213)
T PRK06552 76 LDAVTARLAILAGAQFIVSPSF-NRETA----KICNL--YQIPYLP------GCMTVTEIVTALEAGSEIVKLFPGST-- 140 (213)
T ss_pred CCHHHHHHHHHcCCCEEECCCC-CHHHH----HHHHH--cCCCEEC------CcCCHHHHHHHHHcCCCEEEECCccc--
Confidence 3567889999999999986643 44433 44433 3566666 56666666665 88888855442
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEeccc
Q 008112 353 ELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGE 417 (577)
Q Consensus 353 elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs~E 417 (577)
+|++.+..++. .--+.| +++|.-+ + ...+..++..|+|++-+++.
T Consensus 141 -~G~~~ik~l~~------~~p~ip-~~atGGI---------~---~~N~~~~l~aGa~~vavgs~ 185 (213)
T PRK06552 141 -LGPSFIKAIKG------PLPQVN-VMVTGGV---------N---LDNVKDWFAAGADAVGIGGE 185 (213)
T ss_pred -CCHHHHHHHhh------hCCCCE-EEEECCC---------C---HHHHHHHHHCCCcEEEEchH
Confidence 33222222211 112366 4466544 2 25577899999999988643
No 463
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=36.00 E-value=1.3e+02 Score=30.01 Aligned_cols=56 Identities=25% Similarity=0.480 Sum_probs=44.1
Q ss_pred eEEecccc-ccccccCCCCEEEEeCCeEEEEEEEEeCCeEEEEEe-------eCcEeccCceeeeC
Q 008112 208 ECVSVNYD-DFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVV-------DGGELKSRRHLNVR 265 (577)
Q Consensus 208 ~~i~v~~~-~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~v~~~v~-------~gG~l~s~Kginlp 265 (577)
..+.+..+ .+++.+++||.|-+|. +.|+|.+++++.+.+.+. +=|.++.+.-||+.
T Consensus 22 ~~l~i~~~~~~~~~l~~G~SIAvnG--vCLTV~~i~~~~f~vdvipETl~~TtL~~l~~G~~VNLE 85 (200)
T TIGR00187 22 ISLVVNLADHMLDDLELGDSIAVNG--VCLTVTEINKNHFSVDLSPETLKRTNLGDLKVGTWVNIE 85 (200)
T ss_pred EEEEEEeChHHhcccccCCEEEECc--EEEEEEEEcCCEEEEEEEHHHhhhcchhhCcCCCEEEEc
Confidence 34555555 6788999999999997 889999999998877764 34667777888885
No 464
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=35.93 E-value=1.8e+02 Score=25.34 Aligned_cols=63 Identities=14% Similarity=0.248 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 303 dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
-+..+++++.+.|-+..+.+ -++.++++.+...|.|+++ ..+...++++-+.+...|+|+.+-
T Consensus 19 l~~k~~~~~~~~gi~~~v~a-----~~~~~~~~~~~~~Dvill~----------pqi~~~~~~i~~~~~~~~ipv~~I 81 (95)
T TIGR00853 19 LVNKMNKAAEEYGVPVKIAA-----GSYGAAGEKLDDADVVLLA----------PQVAYMLPDLKKETDKKGIPVEVI 81 (95)
T ss_pred HHHHHHHHHHHCCCcEEEEE-----ecHHHHHhhcCCCCEEEEC----------chHHHHHHHHHHHhhhcCCCEEEe
Confidence 45778888887776654443 3566677767678999886 468888999999999999999763
No 465
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=35.85 E-value=5.4e+02 Score=27.93 Aligned_cols=132 Identities=16% Similarity=0.119 Sum_probs=66.7
Q ss_pred CCCCccCHHHH--------HHHHhcCCCEEEEcCC-------------CCH------------HHHHHHHHHHHh-cCCC
Q 008112 272 PSITEKDWDDI--------KFGVDNKVDFYAVSFV-------------KDA------------QVVHELKNYLKS-CGAD 317 (577)
Q Consensus 272 p~ltekD~~dI--------~~al~~gvD~I~~SfV-------------~sa------------~dv~~lr~~l~~-~~~~ 317 (577)
..+|..|++.+ +.+.+.|+|+|=+..- +.. .-+.++.+.+.+ .|.+
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~ 217 (370)
T cd02929 138 REMDKDDIKRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDD 217 (370)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCC
Confidence 46788887776 4567799999955332 222 223333333333 3667
Q ss_pred ceEEEeecChh------------hHhhHHHHHHhcCEEEEcCCCccCCCC-CCcH-HHHHHHHHHH-HHHcCCceEEEeh
Q 008112 318 IHVIVKIESAD------------SIPNLHSIITASDGAMVARGDLGAELP-IEEV-PLLQEEIIRT-CRSMGKAVIVATN 382 (577)
Q Consensus 318 i~IiaKIEt~~------------gv~NldeIl~~sDGImIaRGDLg~elg-~e~v-~~~qk~Ii~~-c~~aGKPvi~ATq 382 (577)
..|..+|--.+ +++-++.+-+..|.+-+..|-...... .... ...+....+. .+..++||+..-.
T Consensus 218 ~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~ 297 (370)
T cd02929 218 CAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGR 297 (370)
T ss_pred ceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCC
Confidence 77777763211 111122222236888777664321110 0000 0111222222 2345889887543
Q ss_pred hhHhhhcCCCCChHhHHHHHHHHHhc-cceEEec
Q 008112 383 MLESMIVHPTPTRAEVSDIAIAVREG-ADAVMLS 415 (577)
Q Consensus 383 ~LeSM~~~~~PtrAEv~Dv~nav~~G-~D~imLs 415 (577)
+ -+. .++..++.+| +|+|++.
T Consensus 298 i---------~~~---~~~~~~l~~g~~D~V~~g 319 (370)
T cd02929 298 F---------TSP---DKMVEVVKSGILDLIGAA 319 (370)
T ss_pred C---------CCH---HHHHHHHHcCCCCeeeec
Confidence 2 222 2344677777 9999984
No 466
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=35.61 E-value=71 Score=29.04 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=34.6
Q ss_pred ccccccccCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEecc
Q 008112 214 YDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKS 258 (577)
Q Consensus 214 ~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~v~~~v~~gG~l~s 258 (577)
+.++.+.+++||.|..-.|.+- +|.+++++.+..++-.|-.++=
T Consensus 32 ~~~m~~~Lk~GD~VvT~gGi~G-~V~~I~d~~v~leia~gv~i~~ 75 (109)
T PRK05886 32 TIDLHESLQPGDRVHTTSGLQA-TIVGITDDTVDLEIAPGVVTTW 75 (109)
T ss_pred HHHHHHhcCCCCEEEECCCeEE-EEEEEeCCEEEEEECCCeEEEE
Confidence 3478889999999999987664 5778888888888766666663
No 467
>PRK08223 hypothetical protein; Validated
Probab=35.57 E-value=1.9e+02 Score=30.62 Aligned_cols=67 Identities=10% Similarity=0.164 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcH-HHHHHHHHHHHHHcCCceEEE
Q 008112 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEV-PLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 304 v~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v-~~~qk~Ii~~c~~aGKPvi~A 380 (577)
++.+++.+.+.|.++.|.+-=|.. .-+|++++++-.|.|+=+ .... ......+-..|+++|+|++.+
T Consensus 83 ve~a~~~l~~iNP~v~V~~~~~~l-~~~n~~~ll~~~DlVvD~---------~D~~~~~~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 83 AEVLAEMVRDINPELEIRAFPEGI-GKENADAFLDGVDVYVDG---------LDFFEFDARRLVFAACQQRGIPALTA 150 (287)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccc-CccCHHHHHhCCCEEEEC---------CCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 455556777778887776643333 236899999889987632 1121 245677888999999999886
No 468
>PLN02858 fructose-bisphosphate aldolase
Probab=35.54 E-value=3.9e+02 Score=34.43 Aligned_cols=119 Identities=21% Similarity=0.282 Sum_probs=75.1
Q ss_pred CCceEEEeecChhhHhhHHHHHHh-cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEE-ehh--hHhh-hcC
Q 008112 316 ADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA-TNM--LESM-IVH 390 (577)
Q Consensus 316 ~~i~IiaKIEt~~gv~NldeIl~~-sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A-Tq~--LeSM-~~~ 390 (577)
..++|...+......+.+..-++. .+-||+. |-.+|+|+=-..-|++++.|+..|.+|=-= -++ -|.- ...
T Consensus 1168 ~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~D----gS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~ 1243 (1378)
T PLN02858 1168 ASVPITVHFDHGTSKHELLEALELGFDSVMVD----GSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVE 1243 (1378)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccc
Confidence 357777777776655544444443 6799997 446788887788899999999999987110 000 1100 000
Q ss_pred C-CCChHhHHHHHHHHHh-ccceEEeccccCCCCCHH----HHHHHHHHHHHHH
Q 008112 391 P-TPTRAEVSDIAIAVRE-GADAVMLSGETAHGKFPL----KAVKVMHTVSLRT 438 (577)
Q Consensus 391 ~-~PtrAEv~Dv~nav~~-G~D~imLs~ETa~G~yP~----eaV~~m~~I~~~a 438 (577)
. .-...+..++..++.. |+|++..+--|++|.||- --...+.+|-...
T Consensus 1244 ~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~ 1297 (1378)
T PLN02858 1244 EYEAKLTDVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALS 1297 (1378)
T ss_pred ccccCCCCHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHh
Confidence 0 0012234556677764 999999999999999974 2344555555555
No 469
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=35.50 E-value=2.3e+02 Score=29.88 Aligned_cols=68 Identities=9% Similarity=0.020 Sum_probs=44.7
Q ss_pred CHHHHHHHHhcCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-cCEEEEc
Q 008112 278 DWDDIKFGVDNKVDFYAVSF-VKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVA 346 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~Sf-V~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDGImIa 346 (577)
-.+-.+...+.|+|.|++++ ..+.+++.++.+.+...-..++++ .+.+..+...++++-+. ..-|..+
T Consensus 171 Ai~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~-~~~~~~~~~~~~eL~~lG~~~v~~~ 240 (285)
T TIGR02320 171 ALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLV-IVPTSYYTTPTDEFRDAGISVVIYA 240 (285)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEE-EecCCCCCCCHHHHHHcCCCEEEEh
Confidence 34455667899999999996 799999988887764211233443 33454455567777766 5555554
No 470
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=35.49 E-value=2.1e+02 Score=30.73 Aligned_cols=129 Identities=13% Similarity=0.150 Sum_probs=66.0
Q ss_pred CCCCccCHHHH--------HHHHhcCCCEEEEcCC-------------CCH------------HHHHHHHHHHHhcCCCc
Q 008112 272 PSITEKDWDDI--------KFGVDNKVDFYAVSFV-------------KDA------------QVVHELKNYLKSCGADI 318 (577)
Q Consensus 272 p~ltekD~~dI--------~~al~~gvD~I~~SfV-------------~sa------------~dv~~lr~~l~~~~~~i 318 (577)
..+|..|++.| +.+.+.|+|+|=+..- +.. .-+.++.+.+.+.- +.
T Consensus 130 ~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~-~~ 208 (337)
T PRK13523 130 VEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW-DG 208 (337)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc-CC
Confidence 36788888776 4567789999965332 121 12223333333321 34
Q ss_pred eEEEeecChh----h--HhhHHHHHHh-----cCEEEEcCCCccC-CCCCCcHHHHHHHHHHHHH-HcCCceEEEehhhH
Q 008112 319 HVIVKIESAD----S--IPNLHSIITA-----SDGAMVARGDLGA-ELPIEEVPLLQEEIIRTCR-SMGKAVIVATNMLE 385 (577)
Q Consensus 319 ~IiaKIEt~~----g--v~NldeIl~~-----sDGImIaRGDLg~-elg~e~v~~~qk~Ii~~c~-~aGKPvi~ATq~Le 385 (577)
.|..||.-.+ | +++.-+|++. .|.|-|..|-... ..... +..+....+..+ ..++||+....+.
T Consensus 209 ~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~--~~~~~~~~~~ik~~~~ipVi~~G~i~- 285 (337)
T PRK13523 209 PLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVY--PGYQVPFAEHIREHANIATGAVGLIT- 285 (337)
T ss_pred CeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCC--ccccHHHHHHHHhhcCCcEEEeCCCC-
Confidence 6777876422 1 2233333332 6888887663210 11100 111112222222 3578988755432
Q ss_pred hhhcCCCCChHhHHHHHHHHHhc-cceEEec
Q 008112 386 SMIVHPTPTRAEVSDIAIAVREG-ADAVMLS 415 (577)
Q Consensus 386 SM~~~~~PtrAEv~Dv~nav~~G-~D~imLs 415 (577)
|. .++..++.+| +|+|++.
T Consensus 286 --------~~---~~a~~~l~~g~~D~V~~g 305 (337)
T PRK13523 286 --------SG---AQAEEILQNNRADLIFIG 305 (337)
T ss_pred --------CH---HHHHHHHHcCCCChHHhh
Confidence 22 2344677777 9999874
No 471
>PLN02741 riboflavin synthase
Probab=35.43 E-value=1.6e+02 Score=29.28 Aligned_cols=55 Identities=24% Similarity=0.383 Sum_probs=42.9
Q ss_pred EEeccccccccccCCCCEEEEeCCeEEEEEEEEeCCeEEEEEe-------eCcEeccCceeeeC
Q 008112 209 CVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVV-------DGGELKSRRHLNVR 265 (577)
Q Consensus 209 ~i~v~~~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~v~~~v~-------~gG~l~s~Kginlp 265 (577)
.+.+..+.+++.+++||.|-+|. +.|+|.+++++.+.+.+. +=|.++.+.-||+.
T Consensus 24 ~l~i~~~~~~~~l~~G~SIAvnG--vCLTV~~~~~~~f~vdvipETl~~T~L~~l~~G~~VNLE 85 (194)
T PLN02741 24 DLKIEASTVLDGVKLGDSIAVNG--TCLTVTEFDGDEFTVGLAPETLRKTSLGELKTGSLVNLE 85 (194)
T ss_pred EEEEEcchhhcccccCCEEEECc--EEEEEEEECCCEEEEEEEHHHhhhCccccCCCCCEEeec
Confidence 34455456778999999999997 889999999998888775 33667777778875
No 472
>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated
Probab=35.42 E-value=1.7e+02 Score=34.90 Aligned_cols=132 Identities=17% Similarity=0.237 Sum_probs=82.1
Q ss_pred CCCceeecCCCCcccccccccccccccccccccccccCCCCCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEEeccCC
Q 008112 65 VEPEVVPVSPEDVPKRDGEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHG 144 (577)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg 144 (577)
...+..+++||.-+.|.+++++|..... ++..+++-+| -+||
T Consensus 562 ~~~~~~~vT~eG~~kLkeEL~~L~~v~r------------------------------pei~k~I~eA--------R~~G 603 (718)
T PRK06330 562 VEEEILWTTSESFTRMKNKLQSLVGKEM------------------------------VENAKEIEDA--------RALG 603 (718)
T ss_pred CCCCCceeCHHHHHHHHHHHHHHHhcch------------------------------HHHHHHHHHH--------HHCC
Confidence 3445578999999999999988876554 3445555554 2566
Q ss_pred ChHH----------HHHHHHHHHHHHHhcCCCeeEEEee---cCCCeeEEeecCCcEEE--cCCCEEEEEEe---cCCCC
Q 008112 145 DHAS----------HQKVIDLVKEYNAQSKDNVIAIMLD---TKGPEVRSGDLPQPITL--TSGQEFTFTIQ---RGVGS 206 (577)
Q Consensus 145 ~~e~----------~~~~i~~ir~~~~~~~~~~i~I~~D---l~GpkiR~g~~~~~i~L--~~G~~v~lt~~---~~~~~ 206 (577)
+..+ ...+-..+++..+++. + +-++| ++.-+++.|.. +.+ ..|+..+++.- +....
T Consensus 604 DLsENaEY~aAKe~q~~le~RI~~Le~~L~-r--A~VVd~~~i~~d~V~~GS~---Vtlkd~~ge~~tytIVG~~EaD~~ 677 (718)
T PRK06330 604 DLRENSEYKFALEKRARLQEEIRVLSEEIN-R--ARILTKDDVFTDKVGVGCK---VVLEDDQGDKVCYTILGPWDADPD 677 (718)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHHc-c--CEEECCCCCCCCEEeeCcE---EEEEECCCCEEEEEEeChhhcCCC
Confidence 6432 3334455777777775 3 22333 34557777755 555 46766665542 22234
Q ss_pred ceEEecccc--ccccccCCCCEEEEeCCeEEEEEEEEe
Q 008112 207 AECVSVNYD--DFVNDVEVGDMLLVDGGMMSLLVKSKT 242 (577)
Q Consensus 207 ~~~i~v~~~--~~~~~v~~Gd~I~idDG~i~l~V~~v~ 242 (577)
.+.|++..| .-+-.-++||.|.+. | ..++|.++.
T Consensus 678 ~g~ISi~SPIGkALLGkkvGD~V~v~-g-~~~~Il~I~ 713 (718)
T PRK06330 678 NKILSLKSKLAQEMLGKKVGDSVQFQ-G-KKYKISRIQ 713 (718)
T ss_pred CCeeCCCCHHHHHhcCCCCCCEEEEe-c-EEEEEEEEE
Confidence 467887766 223356899999998 4 678887774
No 473
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=35.33 E-value=3.5e+02 Score=28.54 Aligned_cols=95 Identities=22% Similarity=0.201 Sum_probs=52.7
Q ss_pred HHHHHh-cCEEEEc-C-CCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHH-HHHHhcc
Q 008112 334 HSIITA-SDGAMVA-R-GDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIA-IAVREGA 409 (577)
Q Consensus 334 deIl~~-sDGImIa-R-GDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~-nav~~G~ 409 (577)
+..++. +|||++. - |+ ...|..++-..+.+..++.+ .-.+|+|+-+. ..+-.|..+.+ .|-..|+
T Consensus 36 ~~li~~Gv~Gi~v~GstGE-~~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv~---------~~~t~~ai~~a~~A~~~Ga 104 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGE-CATLTWEEKQAFVATVVETV-AGRVPVFVGAT---------TLNTRDTIARTRALLDLGA 104 (309)
T ss_pred HHHHHcCCCEEEECccccc-chhCCHHHHHHHHHHHHHHh-CCCCCEEEEec---------cCCHHHHHHHHHHHHHhCC
Confidence 344444 8999984 1 22 12233334334444444443 33477776432 12223444444 4677799
Q ss_pred ceEEeccccCCCCCHHHHHHHHHHHHHHHh
Q 008112 410 DAVMLSGETAHGKFPLKAVKVMHTVSLRTE 439 (577)
Q Consensus 410 D~imLs~ETa~G~yP~eaV~~m~~I~~~aE 439 (577)
|++|+..=--...-+-+.++..+.|+..++
T Consensus 105 d~vlv~~P~y~~~~~~~l~~yf~~va~a~~ 134 (309)
T cd00952 105 DGTMLGRPMWLPLDVDTAVQFYRDVAEAVP 134 (309)
T ss_pred CEEEECCCcCCCCCHHHHHHHHHHHHHhCC
Confidence 999997543222224678888999998874
No 474
>PF02599 CsrA: Global regulator protein family; InterPro: IPR003751 The RNA-binding protein CsrA (carbon storage regulator) is a new kind of global regulator, which facilitates specific mRNA decay []. CsrA is entirely contained within a globular complex of approximately 18 CsrA-H6 subunits and a single RNA, CsrB. CsrA binds to the CsrB RNA molecule to form the Csr regulatory system which has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis [].; GO: 0003723 RNA binding, 0006109 regulation of carbohydrate metabolic process, 0006402 mRNA catabolic process; PDB: 1Y00_B 2JPP_A 1T3O_A 1VPZ_A.
Probab=35.30 E-value=79 Score=25.17 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=24.0
Q ss_pred cCCCCEEEEeCCeEEEEEEEEeCCeEEEEEe
Q 008112 221 VEVGDMLLVDGGMMSLLVKSKTEDSVKCEVV 251 (577)
Q Consensus 221 v~~Gd~I~idDG~i~l~V~~v~~~~v~~~v~ 251 (577)
-++|..|.|+| .|..+|.++.++.+..-+.
T Consensus 6 Rk~gE~I~Ig~-~I~I~Vl~i~~~~VklgI~ 35 (54)
T PF02599_consen 6 RKVGESIVIGD-DIEITVLEISGGQVKLGID 35 (54)
T ss_dssp EETT-EEEETT-TEEEEEEEEETTEEEEEEE
T ss_pred ccCCCEEEECC-CEEEEEEEEcCCEEEEEEE
Confidence 37899999987 9999999999888766443
No 475
>TIGR03425 urea_degr_2 urea carboxylase-associated protein 2. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.
Probab=35.13 E-value=86 Score=32.20 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=34.0
Q ss_pred cEEEcCCCEEEEEEecCCCCceEEecccccccc--------------ccCCCCEEEEeCCeEEEEEEE
Q 008112 187 PITLTSGQEFTFTIQRGVGSAECVSVNYDDFVN--------------DVEVGDMLLVDGGMMSLLVKS 240 (577)
Q Consensus 187 ~i~L~~G~~v~lt~~~~~~~~~~i~v~~~~~~~--------------~v~~Gd~I~idDG~i~l~V~~ 240 (577)
...|++||.++|+--.+...-..+..|.++..+ .+.+|+.++=|.|+..+.|++
T Consensus 14 s~~v~rGq~lri~d~~G~q~~d~~~~na~d~~Er~n~~dT~k~q~~~~l~~G~~L~Sd~gRpm~sIv~ 81 (233)
T TIGR03425 14 SKVLRRGTRLRLTDLEGGANVSLLLYNADAPLERYNMADTLKVQWTAYLTKGHVLLSDMGRVLASIVE 81 (233)
T ss_pred EEEECCCCEEEEEeCCCCeEeeeEEecCCCcccccCHHHHHHHhCCeeccCCCEeEeCCCcceEEEEc
Confidence 467899999998853322111222223222211 357899999999999998875
No 476
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=35.11 E-value=1.8e+02 Score=31.37 Aligned_cols=66 Identities=11% Similarity=0.088 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 304 v~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
++.+++.|.+.|..+.|-+--+... -+|..++++-.|.|+-+-.+ +..+..+-+.|+++++|.+.+
T Consensus 84 a~~a~~~l~~~np~v~v~~~~~~i~-~~~~~~~~~~~DvVvd~~d~----------~~~r~~~n~~c~~~~ip~v~~ 149 (355)
T PRK05597 84 AESAREAMLALNPDVKVTVSVRRLT-WSNALDELRDADVILDGSDN----------FDTRHLASWAAARLGIPHVWA 149 (355)
T ss_pred HHHHHHHHHHHCCCcEEEEEEeecC-HHHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 4556677888888888776544443 36788888889988876332 245556778999999998865
No 477
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=35.10 E-value=6.2e+02 Score=27.48 Aligned_cols=134 Identities=12% Similarity=0.087 Sum_probs=82.2
Q ss_pred CCCCCCccCHHHHHHHHhcCCCEEEEcCC-------------CCHHHHHHHHHHHHhcCCCceEEEeec------C-hhh
Q 008112 270 TLPSITEKDWDDIKFGVDNKVDFYAVSFV-------------KDAQVVHELKNYLKSCGADIHVIVKIE------S-ADS 329 (577)
Q Consensus 270 ~lp~ltekD~~dI~~al~~gvD~I~~SfV-------------~sa~dv~~lr~~l~~~~~~i~IiaKIE------t-~~g 329 (577)
++--+|-+|..--+.+-+.|+|.|.+.=- =+-+++..--+.+...-.+..+++=++ + .++
T Consensus 36 kivmlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~a 115 (332)
T PLN02424 36 PITMVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQA 115 (332)
T ss_pred cEEEEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHH
Confidence 35566889988888888899999987510 122333333344444445566675554 2 478
Q ss_pred HhhHHHHHHh--cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceE----EEehhhHhhhc---CCCCChH---h
Q 008112 330 IPNLHSIITA--SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVI----VATNMLESMIV---HPTPTRA---E 397 (577)
Q Consensus 330 v~NldeIl~~--sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi----~ATq~LeSM~~---~~~PtrA---E 397 (577)
++|...++.. +|+|=+--|. ...-.+|++.-++|+||+ +--|-...|-- +. -+.+ +
T Consensus 116 v~nA~rl~~eaGa~aVKlEGg~-----------~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~lGGykvqG-r~~~~a~~ 183 (332)
T PLN02424 116 VESAVRMLKEGGMDAVKLEGGS-----------PSRVTAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQG-RTAESAVK 183 (332)
T ss_pred HHHHHHHHHHhCCcEEEECCCc-----------HHHHHHHHHHHHcCCCEEEeecccceeehhhcCccccC-CCHHHHHH
Confidence 8999999764 7888875332 222355556569999998 65554444421 21 1222 2
Q ss_pred H-HHHHHHHHhccceEEec
Q 008112 398 V-SDIAIAVREGADAVMLS 415 (577)
Q Consensus 398 v-~Dv~nav~~G~D~imLs 415 (577)
+ .|.-.....|+++++|-
T Consensus 184 li~dA~ale~AGAf~ivLE 202 (332)
T PLN02424 184 VVETALALQEAGCFAVVLE 202 (332)
T ss_pred HHHHHHHHHHcCCcEEEEc
Confidence 2 34444558899999994
No 478
>PRK01362 putative translaldolase; Provisional
Probab=34.97 E-value=1.2e+02 Score=30.60 Aligned_cols=54 Identities=13% Similarity=0.308 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHH--------HHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQV--------VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA 339 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~d--------v~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~ 339 (577)
.....|.+.|++|| .|||...+| ++++.++++..+.+.+|++ .+++|.+++++.
T Consensus 113 ~Qa~~Aa~aGa~yi-spyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-----AS~r~~~~v~~~ 174 (214)
T PRK01362 113 NQALLAAKAGATYV-SPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-----ASVRHPMHVLEA 174 (214)
T ss_pred HHHHHHHhcCCcEE-EeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-----eecCCHHHHHHH
Confidence 34456677899987 499998877 4566666666666677766 466677766653
No 479
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=34.71 E-value=5.5e+02 Score=27.72 Aligned_cols=136 Identities=21% Similarity=0.203 Sum_probs=70.7
Q ss_pred CHHHHHHHHhcCCCEEEEcCCCCH---------------HHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh---
Q 008112 278 DWDDIKFGVDNKVDFYAVSFVKDA---------------QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--- 339 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~SfV~sa---------------~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~--- 339 (577)
..+||+.+++.|+|.|.+.+--|. +.+.+..++..+.|..+.+-+.-.+..-.+.+.++++.
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~ 153 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAE 153 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHH
Confidence 367889999999999877765553 22223344555555544433322232233444444433
Q ss_pred --cCEEEEcCCC-ccCCCCCCcHHHHHHHHHHH-HHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 340 --SDGAMVARGD-LGAELPIEEVPLLQEEIIRT-CRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 340 --sDGImIaRGD-Lg~elg~e~v~~~qk~Ii~~-c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
+|.|-++ | .|.-.| .--.+++.. ++..+.|+.+-++ ...--|-. -...|+..|+|.+=-|
T Consensus 154 ~Ga~~i~l~--DT~G~~~P-----~~v~~lv~~l~~~~~v~l~~H~H--------Nd~GlA~A-NalaA~~aGa~~vd~t 217 (365)
T TIGR02660 154 AGADRFRFA--DTVGILDP-----FSTYELVRALRQAVDLPLEMHAH--------NDLGMATA-NTLAAVRAGATHVNTT 217 (365)
T ss_pred cCcCEEEEc--ccCCCCCH-----HHHHHHHHHHHHhcCCeEEEEec--------CCCChHHH-HHHHHHHhCCCEEEEE
Confidence 5555543 4 233222 233333333 3344677776544 11122211 1233788999876532
Q ss_pred ----cccCCCCCHHHHHHH
Q 008112 416 ----GETAHGKFPLKAVKV 430 (577)
Q Consensus 416 ----~ETa~G~yP~eaV~~ 430 (577)
|| ..|+=|+|.|-.
T Consensus 218 l~GiGe-raGN~~lE~lv~ 235 (365)
T TIGR02660 218 VNGLGE-RAGNAALEEVAM 235 (365)
T ss_pred eecccc-ccccCCHHHHHH
Confidence 45 457888777655
No 480
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=34.65 E-value=5e+02 Score=27.84 Aligned_cols=131 Identities=16% Similarity=0.160 Sum_probs=66.1
Q ss_pred CCCccCHHHH--------HHHHhcCCCEEEEcC-------------CCC------------HHHHHHHHHHHHh-cCCCc
Q 008112 273 SITEKDWDDI--------KFGVDNKVDFYAVSF-------------VKD------------AQVVHELKNYLKS-CGADI 318 (577)
Q Consensus 273 ~ltekD~~dI--------~~al~~gvD~I~~Sf-------------V~s------------a~dv~~lr~~l~~-~~~~i 318 (577)
.+|+.|++.+ +.+.+.|+|+|=+-. .+. ..-+.++.+.+.+ .|.+.
T Consensus 126 ~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~ 205 (353)
T cd02930 126 ELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDF 205 (353)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 5788887776 456779999995522 222 2333333333333 36777
Q ss_pred eEEEeecChh----------hHhhHHHHHHh-cCEEEEcCCCccCCCCCC--cH-HHHHHHHHHH-HHHcCCceEEEehh
Q 008112 319 HVIVKIESAD----------SIPNLHSIITA-SDGAMVARGDLGAELPIE--EV-PLLQEEIIRT-CRSMGKAVIVATNM 383 (577)
Q Consensus 319 ~IiaKIEt~~----------gv~NldeIl~~-sDGImIaRGDLg~elg~e--~v-~~~qk~Ii~~-c~~aGKPvi~ATq~ 383 (577)
.|..+|--.+ +++-+..+-+. .|.|-|..|-..-..+.. .. ...+....+. .+..+.||+..-.
T Consensus 206 ~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~- 284 (353)
T cd02930 206 IIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNR- 284 (353)
T ss_pred eEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCC-
Confidence 7777764322 22222222222 688877544221111110 00 0111222222 2335889886433
Q ss_pred hHhhhcCCCCChHhHHHHHHHHHhc-cceEEec
Q 008112 384 LESMIVHPTPTRAEVSDIAIAVREG-ADAVMLS 415 (577)
Q Consensus 384 LeSM~~~~~PtrAEv~Dv~nav~~G-~D~imLs 415 (577)
.-++ .+...++..| +|.|++.
T Consensus 285 --------i~~~---~~a~~~i~~g~~D~V~~g 306 (353)
T cd02930 285 --------INTP---EVAERLLADGDADMVSMA 306 (353)
T ss_pred --------CCCH---HHHHHHHHCCCCChhHhh
Confidence 2234 3455677766 9999984
No 481
>PRK12346 transaldolase A; Provisional
Probab=34.62 E-value=82 Score=33.77 Aligned_cols=22 Identities=14% Similarity=0.049 Sum_probs=16.8
Q ss_pred HHHHHHhcCCCEEEEcCCCCHHH
Q 008112 281 DIKFGVDNKVDFYAVSFVKDAQV 303 (577)
Q Consensus 281 dI~~al~~gvD~I~~SfV~sa~d 303 (577)
.-..+.+.|+++| .|||..-+|
T Consensus 162 Qa~~aa~AGa~~I-SPfVgRi~d 183 (316)
T PRK12346 162 QARACAEAGVFLI-SPFVGRIYD 183 (316)
T ss_pred HHHHHHHcCCCEE-EecccHHHH
Confidence 3445677899977 599998877
No 482
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=34.52 E-value=3e+02 Score=27.28 Aligned_cols=94 Identities=12% Similarity=0.151 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHhhc-Cc-eEEEEcC--ChHHHHHHHh-----h---CCCCeEEEEcCcHHHh--------------hhh
Q 008112 460 SEMFAYHATMMSNTL-GT-SIVVFTR--TGFMAILLSH-----Y---RPSGTIFAFTNEKRIQ--------------QRL 513 (577)
Q Consensus 460 ~~~ia~~a~~~a~~~-~a-aIiV~T~--sG~tA~~is~-----~---RP~~PIIAvT~~~~ta--------------R~L 513 (577)
.+.+..++-.+++.+ +. .|+++-. |+..|+.++. | ||..|.++++.+..+. |++
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql 103 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQV 103 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHH
Confidence 355666666666654 44 6777654 4446777773 3 9999999998765544 333
Q ss_pred --cccCCeeEEEeccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecC
Q 008112 514 --SLYQGVCPIYMEFSDDAEETFDNALGLLQKQGMVKEGEEVALLQSG 559 (577)
Q Consensus 514 --~L~~GV~Pvl~~~~~d~d~~i~~al~~l~e~Gllk~GD~VVvv~G~ 559 (577)
.+..|=.-+.+..+-+.++ +..++++++++| -++|.++|.
T Consensus 104 ~~~~~~gDvli~iS~SG~s~~-v~~a~~~Ak~~G-----~~vI~IT~~ 145 (196)
T PRK10886 104 RALGHAGDVLLAISTRGNSRD-IVKAVEAAVTRD-----MTIVALTGY 145 (196)
T ss_pred HHcCCCCCEEEEEeCCCCCHH-HHHHHHHHHHCC-----CEEEEEeCC
Confidence 2444444455544444443 556777888755 467777663
No 483
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=34.24 E-value=2.9e+02 Score=33.75 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=81.2
Q ss_pred HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCC----------------------CceEEEeecChhhHhhHHHHH
Q 008112 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA----------------------DIHVIVKIESADSIPNLHSII 337 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~----------------------~i~IiaKIEt~~gv~NldeIl 337 (577)
+.++.|.+.|.+.|++.=-.+..-+.++.+.+...|- ...++.--++.+|..||-.+.
T Consensus 23 elv~~A~~~G~~aiAiTDh~~~~g~~~f~~~~~~~gik~I~G~E~~~~~~~~~~~~~~~~~~lvLLAkN~~GY~NL~kL~ 102 (874)
T PRK09532 23 ALVDRAIELGMPAIALTDHGVMYGAIELLKVCRNKGIKPIIGNEMYVINGDIEKQKRRRKYHQVVLAKNTQGYKNLVKLT 102 (874)
T ss_pred HHHHHHHHCCCCEEEEecCCChhhHHHHHHHHHHcCCeEEEEEEEEecCCCcccccccccceeEEEecCHHHHHHHHHHH
Confidence 4567888999999999887777666666665543221 013444557888999996665
Q ss_pred H-------------------------hcCEEEEcCCCcc-------------------------------CCCCCCc---
Q 008112 338 T-------------------------ASDGAMVARGDLG-------------------------------AELPIEE--- 358 (577)
Q Consensus 338 ~-------------------------~sDGImIaRGDLg-------------------------------~elg~e~--- 358 (577)
. ..+|+++.-|-++ +|+....
T Consensus 103 S~a~~~~~~~~~~~~~P~i~~e~L~~~~~gLi~lsg~~~g~~~~~l~~~~~~~a~~~~~~~~~~fg~~~YLEIq~~g~~~ 182 (874)
T PRK09532 103 TISHLQGVQGKGIFARPCINKELLEQYHEGLIVTSACLGGEIPQAILSGRPDAARKVAKWYKKLFGDDFYLEIQDHGSQE 182 (874)
T ss_pred hHHHHhcccccCccCCCcCCHHHHHhcCCCeEEEeCCccchHHHHHhCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCChH
Confidence 3 2577776543222 2222111
Q ss_pred HHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhcc
Q 008112 359 VPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGA 409 (577)
Q Consensus 359 v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~ 409 (577)
=....+.+++.|++.|+|++.... ++-..|..++..|+..++..|.
T Consensus 183 e~~~n~~Li~lAkk~giplVATnD-----vhY~~~eD~~~hdvL~~i~~g~ 228 (874)
T PRK09532 183 DRIVNVEIVKIARELGIKIIATND-----SHFISCYDVEAHDALLCIQTGK 228 (874)
T ss_pred HHHHHHHHHHHHHHhCCCEEEccC-----CcccCHhHHHHHHHHHHHhCCC
Confidence 112336789999999999776433 2344688888999999998774
No 484
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=34.20 E-value=1e+02 Score=34.13 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=63.9
Q ss_pred ccCHHHHHHHHhcCCCEEEEc-------CCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCC
Q 008112 276 EKDWDDIKFGVDNKVDFYAVS-------FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARG 348 (577)
Q Consensus 276 ekD~~dI~~al~~gvD~I~~S-------fV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRG 348 (577)
+.|.-.+.+..+.|+.+|... -|-+.+++.+.++.+...|-+..+ ||+.. +.+-|+.|.+
T Consensus 10 p~d~v~l~~irQ~G~~giV~al~~~p~gevW~~~~i~~~k~~ie~~GL~~~v---vEs~p----------v~e~Ik~g~~ 76 (394)
T TIGR00695 10 PNDPVSLEDVRQAGATGIVTALHHIPNGEVWEKEEIRKRKEYIESAGLHWSV---VESVP----------VHEAIKTGTG 76 (394)
T ss_pred CCCcchHHHHhhcCCcceeecCCCCCCCCCCCHHHHHHHHHHHHHcCCeEEE---EeCCC----------ccHHHHcCCC
Confidence 466667777778899998733 378899999999999988755443 56642 1234444533
Q ss_pred CccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehh
Q 008112 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNM 383 (577)
Q Consensus 349 DLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~ 383 (577)
+.++..+..|+.|+..-++|+|+++.--|
T Consensus 77 ------~rd~~Ienyk~~irNla~~GI~vicYNFM 105 (394)
T TIGR00695 77 ------NYGRWIENYKQTLRNLAQCGIKTVCYNFM 105 (394)
T ss_pred ------cHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 24567777889999999999999986543
No 485
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=34.20 E-value=84 Score=27.33 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=24.1
Q ss_pred CCcEEEcCCCEEEEEEecCCCCceEEeccccccccccCCCCE
Q 008112 185 PQPITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDM 226 (577)
Q Consensus 185 ~~~i~L~~G~~v~lt~~~~~~~~~~i~v~~~~~~~~v~~Gd~ 226 (577)
+..+.+++|+.++|+..+.......+.++.-++-..+.+|+.
T Consensus 34 P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~~~l~~g~~ 75 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNNDSRPHEFVIPDLGISKVLPPGET 75 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEEEEE-TT-E
T ss_pred cCEEEEcCCCeEEEEEEECCCCcEEEEECCCceEEEECCCCE
Confidence 457999999988888765433334555554444455666653
No 486
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=34.18 E-value=77 Score=28.55 Aligned_cols=42 Identities=29% Similarity=0.464 Sum_probs=31.9
Q ss_pred cccccccCCCCEEEEeCCeEEEEEEEEeCCeEEEEEeeCcEec
Q 008112 215 DDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELK 257 (577)
Q Consensus 215 ~~~~~~v~~Gd~I~idDG~i~l~V~~v~~~~v~~~v~~gG~l~ 257 (577)
.++.+.+++||+|..-.|.+ -+|.+++++.+..++-.|..++
T Consensus 47 ~~~~~~Lk~Gd~VvT~gGi~-G~Vv~i~~~~v~lei~~g~~i~ 88 (106)
T PRK05585 47 KKMLSSLAKGDEVVTNGGII-GKVTKVSEDFVIIELNDDTEIK 88 (106)
T ss_pred HHHHHhcCCCCEEEECCCeE-EEEEEEeCCEEEEEECCCeEEE
Confidence 57888999999999888755 5667788888887775555554
No 487
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=34.03 E-value=3.9e+02 Score=27.21 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=38.9
Q ss_pred CHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEe-ecChhhHhhHHHHHHh-cCEEEEc
Q 008112 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITA-SDGAMVA 346 (577)
Q Consensus 278 D~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaK-IEt~~gv~NldeIl~~-sDGImIa 346 (577)
-.+-.+...+.|+|.|+++-..+.++++++.+.+ +.+++.. .+... ..+++++.+. ..-+.++
T Consensus 162 ai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~~-----~~Pl~~~~~~~~~-~~~~~~l~~lG~~~v~~~ 226 (243)
T cd00377 162 AIERAKAYAEAGADGIFVEGLKDPEEIRAFAEAP-----DVPLNVNMTPGGN-LLTVAELAELGVRRVSYG 226 (243)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhcC-----CCCEEEEecCCCC-CCCHHHHHHCCCeEEEEC
Confidence 3455566789999999999888887777776542 3444444 22221 2466666655 4444443
No 488
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=33.96 E-value=67 Score=33.46 Aligned_cols=69 Identities=20% Similarity=0.284 Sum_probs=51.5
Q ss_pred ccCHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEE
Q 008112 276 EKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMV 345 (577)
Q Consensus 276 ekD~~dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImI 345 (577)
+.|.+.++.-++.|+||+.--++=+++.+.++.+.+...|-+++|++-|=-.....++.-+...+ ||-|
T Consensus 159 ~~~~~~l~~Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~g~~~pIi~GI~p~~s~~~~~~~~~~~-Gv~i 227 (287)
T PF02219_consen 159 EAELKRLKKKIDAGADFIITQPFFDAEAFERFLDRLREAGIDVPIIPGIMPLTSAKSARFLAKLC-GVDI 227 (287)
T ss_dssp HHHHHHHHHHHHTTESEEEEEE-SSHHHHHHHHHHHHHTTHTSEEEEEEE-HCCHHHHHHHHHHH-T-EE
T ss_pred HHHHHHHHHHHHCCCCEEeccccCCHHHHHHHHHHHHHcCCCCcEEEEEeccCCHHHHHHHHhcc-CccC
Confidence 34556677778999999999999999999999999998888889888765555555665555555 5554
No 489
>PF09347 DUF1989: Domain of unknown function (DUF1989); InterPro: IPR018959 This entry represents proteins that are functionally uncharacterised. ; PDB: 3ORU_A 3SIY_C 3DI4_A.
Probab=33.90 E-value=88 Score=30.34 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=31.8
Q ss_pred cEEEcCCCEEEEEEecCCCCceEEecccccccc--------------ccCCCCEEEEeCCeEEEEEEEEe
Q 008112 187 PITLTSGQEFTFTIQRGVGSAECVSVNYDDFVN--------------DVEVGDMLLVDGGMMSLLVKSKT 242 (577)
Q Consensus 187 ~i~L~~G~~v~lt~~~~~~~~~~i~v~~~~~~~--------------~v~~Gd~I~idDG~i~l~V~~v~ 242 (577)
...|++||.++|+--.+...-..+..|.++..+ .+++||.+|=|.|+..+++++=.
T Consensus 11 a~~v~rG~~lri~d~~G~q~~d~~~~~a~d~~Er~s~~~T~~~~~~~~l~~G~~L~S~~~rpm~tIv~Dt 80 (166)
T PF09347_consen 11 AFRVKRGQVLRITDPEGNQVVDLLAYNADDPSERLSMGDTRKAQHTIYLTTGDVLYSNMGRPMLTIVEDT 80 (166)
T ss_dssp EEEE-TT-EEEEEESSSS--EEEEEEETTEEEEEB-HHHHHHHHCBSC--TT-EEEBTTTSEEEEEEEET
T ss_pred EEEECCCCEEEEEeCCCCceeEEEEEecCCCcEEeCHHHHHHhhcccccCCCCEEEcCCCCeEEEEEccC
Confidence 467899999999864332222222233322211 36789999999999999988743
No 490
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=33.88 E-value=2.7e+02 Score=25.28 Aligned_cols=66 Identities=20% Similarity=0.269 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 008112 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVA 380 (577)
Q Consensus 304 v~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~A 380 (577)
++.+++.+.+.+.++.+-..-+.... .+..+.+.-.|.|+.+-. . ...+..+.+.|+++++|++.+
T Consensus 55 a~~~~~~l~~~~p~v~i~~~~~~~~~-~~~~~~~~~~diVi~~~d---------~-~~~~~~l~~~~~~~~i~~i~~ 120 (143)
T cd01483 55 AEVAARRLNELNPGVNVTAVPEGISE-DNLDDFLDGVDLVIDAID---------N-IAVRRALNRACKELGIPVIDA 120 (143)
T ss_pred HHHHHHHHHHHCCCcEEEEEeeecCh-hhHHHHhcCCCEEEECCC---------C-HHHHHHHHHHHHHcCCCEEEE
Confidence 45666777777777665554333222 233556666787776522 2 467888999999999998875
No 491
>PRK14852 hypothetical protein; Provisional
Probab=33.87 E-value=1.5e+02 Score=36.57 Aligned_cols=70 Identities=10% Similarity=0.078 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEeh
Q 008112 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATN 382 (577)
Q Consensus 304 v~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq 382 (577)
+..+++.+.+.|..+.|.+--|.. .-+|++++++-+|.|+=+-.++ -..+...+...|++.|+|+|.++-
T Consensus 388 aevaa~~l~~INP~v~I~~~~~~I-~~en~~~fl~~~DiVVDa~D~~--------~~~~rr~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 388 LDVMTERALSVNPFLDIRSFPEGV-AAETIDAFLKDVDLLVDGIDFF--------ALDIRRRLFNRALELGIPVITAGP 457 (989)
T ss_pred HHHHHHHHHHHCCCCeEEEEecCC-CHHHHHHHhhCCCEEEECCCCc--------cHHHHHHHHHHHHHcCCCEEEeec
Confidence 455566677778887766654443 3379999999899888552111 124667888999999999998764
No 492
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=33.81 E-value=2.8e+02 Score=28.64 Aligned_cols=87 Identities=14% Similarity=0.095 Sum_probs=56.8
Q ss_pred HHHHHHhcCCCceEEEeecChhhHhhHHHHHHh--cCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEehhh
Q 008112 307 LKNYLKSCGADIHVIVKIESADSIPNLHSIITA--SDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVATNML 384 (577)
Q Consensus 307 lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~--sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~ATq~L 384 (577)
+++.+.....-...+..+-++. +-||+.. -|.++|. +|=+.-.+..+ ..++.+|+.+|.++++
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp~----~~e~~a~~G~D~v~iD-----~EHg~~~~~~~-~~~i~a~~~~g~~~lV----- 74 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANPI----TTEVLGLAGFDWLVLD-----GEHAPNDVSTF-IPQLMALKGSASAPVV----- 74 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCcH----HHHHHHhcCCCEEEEc-----cccCCCCHHHH-HHHHHHHhhcCCCcEE-----
Confidence 5666654322344666666653 4455554 7999985 23343355554 4688899999999987
Q ss_pred HhhhcCCCCChHhHHHHHHHHHhccceEEec
Q 008112 385 ESMIVHPTPTRAEVSDIAIAVREGADAVMLS 415 (577)
Q Consensus 385 eSM~~~~~PtrAEv~Dv~nav~~G~D~imLs 415 (577)
.-|.+++ ..+..++..|+++||+.
T Consensus 75 ----Rvp~~~~---~~i~r~LD~Ga~giivP 98 (256)
T PRK10558 75 ----RVPTNEP---VIIKRLLDIGFYNFLIP 98 (256)
T ss_pred ----ECCCCCH---HHHHHHhCCCCCeeeec
Confidence 3334443 55778888999999985
No 493
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=33.51 E-value=1.3e+02 Score=30.64 Aligned_cols=86 Identities=16% Similarity=0.063 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCCEEEEcCCCC-----HHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHH---HHh--cCEEEEcCC
Q 008112 279 WDDIKFGVDNKVDFYAVSFVKD-----AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSI---ITA--SDGAMVARG 348 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV~s-----a~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeI---l~~--sDGImIaRG 348 (577)
.+.++...+.|++.+.+.-+.+ .-|...+++..... ++++|+- -|+.+.+++ ++. +||+|+|+.
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~--~ipvia~----GGv~s~~d~~~~~~~~G~~gvivg~a 229 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAV--NVPVIAS----GGAGNLEHFVEAFTEGGADAALAASI 229 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhC--CCCEEEE----CCCCCHHHHHHHHHhCCccEEeEhHH
Confidence 3555667789999887754432 12344444433322 4666662 245555555 432 899999988
Q ss_pred CccCCCCCCcHHHHHHHHHHHHHHcCCce
Q 008112 349 DLGAELPIEEVPLLQEEIIRTCRSMGKAV 377 (577)
Q Consensus 349 DLg~elg~e~v~~~qk~Ii~~c~~aGKPv 377 (577)
...-.+++++ +...|++.|.++
T Consensus 230 l~~~~~~~~~-------~~~~~~~~~~~~ 251 (253)
T PRK02083 230 FHFGEITIGE-------LKAYLAEQGIPV 251 (253)
T ss_pred HHcCCCCHHH-------HHHHHHHCCCcc
Confidence 7766666544 344455677765
No 494
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=33.46 E-value=1.2e+02 Score=31.93 Aligned_cols=45 Identities=20% Similarity=0.067 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHhCCcEEEEeccCCChHHHHHHHHHHHHHHHhcC
Q 008112 120 TNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSK 164 (577)
Q Consensus 120 ~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~ 164 (577)
+.+.+.+++.+++|.+.+-|.-||.+.++..+.-+.++++...+|
T Consensus 84 ~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~g 128 (281)
T PRK06806 84 GMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYG 128 (281)
T ss_pred CCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 457999999999999999999999999998888888888888776
No 495
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=33.40 E-value=2.2e+02 Score=30.78 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHhcCEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 008112 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRTCRSMGKAVIVAT 381 (577)
Q Consensus 304 v~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDGImIaRGDLg~elg~e~v~~~qk~Ii~~c~~aGKPvi~AT 381 (577)
++.+.+.+.+.+..+.+.+--+... -+|++++++-.|.|+-+-.+ +..+..+-+.|+++++|++.+.
T Consensus 191 a~~~~~~l~~~np~v~v~~~~~~~~-~~~~~~~~~~~D~Vv~~~d~----------~~~r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 191 VDSAAQRLAALNPDVQVEAVQERVT-SDNVEALLQDVDVVVDGADN----------FPTRYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCC-hHHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 4555566666677776655433333 25888888889988876222 2356678889999999998763
No 496
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=33.35 E-value=5.8e+02 Score=27.96 Aligned_cols=106 Identities=14% Similarity=0.145 Sum_probs=55.2
Q ss_pred HHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEeecC--hhhHhhHHHHHHh-cCEEEEc-CCCccCCC--
Q 008112 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIES--ADSIPNLHSIITA-SDGAMVA-RGDLGAEL-- 354 (577)
Q Consensus 281 dI~~al~~gvD~I~~SfV~sa~dv~~lr~~l~~~~~~i~IiaKIEt--~~gv~NldeIl~~-sDGImIa-RGDLg~el-- 354 (577)
..+...+.+++.+ +++-+.++.+.+...+ +.+|+-. ....+-.+.+++. +|.|.+- |- -..+.
T Consensus 104 aa~~~~e~~~~~~------~p~l~~~ii~~vr~a~----VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt-~~q~~~s 172 (369)
T TIGR01304 104 ATRLLQELHAAPL------KPELLGERIAEVRDSG----VITAVRVSPQNAREIAPIVVKAGADLLVIQGTL-VSAEHVS 172 (369)
T ss_pred HHHHHHHcCCCcc------ChHHHHHHHHHHHhcc----eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccc-hhhhccC
Confidence 3344455666652 4555555555554433 4444432 3344444444444 8888873 11 00000
Q ss_pred CCCcHHHHHHHHHHHHHHcCCceEEEehhhHhhhcCCCCChHhHHHHHHHHHhccceEEe
Q 008112 355 PIEEVPLLQEEIIRTCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 414 (577)
Q Consensus 355 g~e~v~~~qk~Ii~~c~~aGKPvi~ATq~LeSM~~~~~PtrAEv~Dv~nav~~G~D~imL 414 (577)
+..+ ...+.+.+++.++|||. .. ..|. .|+..++..|+|+||.
T Consensus 173 g~~~----p~~l~~~i~~~~IPVI~-G~---------V~t~---e~A~~~~~aGaDgV~~ 215 (369)
T TIGR01304 173 TSGE----PLNLKEFIGELDVPVIA-GG---------VNDY---TTALHLMRTGAAGVIV 215 (369)
T ss_pred CCCC----HHHHHHHHHHCCCCEEE-eC---------CCCH---HHHHHHHHcCCCEEEE
Confidence 1111 23566667778999985 22 2233 4466777789999993
No 497
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=32.97 E-value=83 Score=26.02 Aligned_cols=42 Identities=17% Similarity=0.393 Sum_probs=29.7
Q ss_pred CCCEEEEEEecCCCCceEEeccccccccccCCCCEEEE-eCCeEEE
Q 008112 192 SGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLV-DGGMMSL 236 (577)
Q Consensus 192 ~G~~v~lt~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~i-dDG~i~l 236 (577)
+|+...+-.++. ...+-++-..|+..++.||.|.+ ++|.+.+
T Consensus 8 E~~~AVl~~~~~---~~~~~vp~~~LP~~~keGDvl~i~~~~~~~~ 50 (71)
T PF11213_consen 8 EGDYAVLELEDG---EKEIDVPRSRLPEGAKEGDVLEIGEDGSIEI 50 (71)
T ss_pred eCCEEEEEECCC---eEEEEEEHHHCCCCCCcccEEEECCCceEEE
Confidence 366666655432 13567777789999999999999 7777654
No 498
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=32.92 E-value=5.5e+02 Score=27.53 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHc--------CCceEEEehhhHhhhcCCCCChHhHHHHHH-HHHhccceEEecccc
Q 008112 359 VPLLQEEIIRTCRSM--------GKAVIVATNMLESMIVHPTPTRAEVSDIAI-AVREGADAVMLSGET 418 (577)
Q Consensus 359 v~~~qk~Ii~~c~~a--------GKPvi~ATq~LeSM~~~~~PtrAEv~Dv~n-av~~G~D~imLs~ET 418 (577)
.+....++++++++. .+|+++= -.|..+..++.+++. +...|+|++.+.+-+
T Consensus 187 ~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vK--------LsP~~~~~~i~~ia~~~~~~GadGi~l~NT~ 247 (335)
T TIGR01036 187 YKAELRDLLTAVKQEQDGLRRVHRVPVLVK--------IAPDLTESDLEDIADSLVELGIDGVIATNTT 247 (335)
T ss_pred CHHHHHHHHHHHHHHHHhhhhccCCceEEE--------eCCCCCHHHHHHHHHHHHHhCCcEEEEECCC
Confidence 345566666666543 2898862 345556567888887 677899999998754
No 499
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=32.81 E-value=1.2e+02 Score=30.01 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCCEEEEcCC--------CCHHHHHHHHHHHHhcCCCceEEE--eecChhhHhhHHHHHHh-cCEEEEcC
Q 008112 279 WDDIKFGVDNKVDFYAVSFV--------KDAQVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITA-SDGAMVAR 347 (577)
Q Consensus 279 ~~dI~~al~~gvD~I~~SfV--------~sa~dv~~lr~~l~~~~~~i~Iia--KIEt~~gv~NldeIl~~-sDGImIaR 347 (577)
.+++..+.+.|+|+|.+... ....+...++++.+.. ++++++ -|-++ +|+.+.++. +||+++|+
T Consensus 133 ~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~~~---~~~~~~l~~GadgV~vGs 207 (219)
T cd04729 133 LEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRINSP---EQAAKALELGADAVVVGS 207 (219)
T ss_pred HHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCCCH---HHHHHHHHCCCCEEEEch
Confidence 45567788999999865321 1122333444333322 466665 23222 566776766 99999996
Q ss_pred C
Q 008112 348 G 348 (577)
Q Consensus 348 G 348 (577)
.
T Consensus 208 a 208 (219)
T cd04729 208 A 208 (219)
T ss_pred H
Confidence 4
No 500
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=32.76 E-value=62 Score=32.81 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCCEEEEcCCCC-----HHHHHHHHHHHHhcCCCceEEEeecChhhHhhHHHHHHh-------cCEEEEcC
Q 008112 280 DDIKFGVDNKVDFYAVSFVKD-----AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-------SDGAMVAR 347 (577)
Q Consensus 280 ~dI~~al~~gvD~I~~SfV~s-----a~dv~~lr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-------sDGImIaR 347 (577)
+.++...+.|++.+.+--+.. .-|...+++.... .++++|+ --++.+++++.+. +||+|+||
T Consensus 150 ~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~--~~ipvia----sGGi~s~~D~~~l~~~~~~GvdgV~igr 223 (241)
T PRK14024 150 EVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCAR--TDAPVVA----SGGVSSLDDLRALAELVPLGVEGAIVGK 223 (241)
T ss_pred HHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhh--CCCCEEE----eCCCCCHHHHHHHhhhccCCccEEEEeH
Confidence 334556688999887765532 1244555444432 3577777 2355566555432 89999999
Q ss_pred CCccCCCCCCcH
Q 008112 348 GDLGAELPIEEV 359 (577)
Q Consensus 348 GDLg~elg~e~v 359 (577)
+=+.-.+++++.
T Consensus 224 a~~~g~~~~~~~ 235 (241)
T PRK14024 224 ALYAGAFTLPEA 235 (241)
T ss_pred HHHcCCCCHHHH
Confidence 988777776654
Done!