BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008117
(577 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B2RY56|RBM25_MOUSE RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE=1 SV=2
Length = 838
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 70/149 (46%), Gaps = 23/149 (15%)
Query: 102 IPGVRPIMPPVVRPVPLPTVTPAEK---------------------PQTKVYVGKIAPTA 140
IP IM P V +PTV+ K P T V+VG I+ A
Sbjct: 40 IPVPMSIMAPAPT-VLVPTVSMVGKHLGARKDHPGLKLKENDENCGPTTTVFVGNISEKA 98
Query: 141 DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200
+ +L CG V SWKR Q S G + FGFCE++ E LRALRLL+ I ++L
Sbjct: 99 SDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRALRLLHDLQIGEKKL 157
Query: 201 MLKVDQATREYLERYVDKKTENTKKLKET 229
++KVD T+ L+ + KK N ET
Sbjct: 158 LVKVDAKTKAQLDEWKAKKKANGNARPET 186
>sp|P49756|RBM25_HUMAN RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3
Length = 843
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 67/139 (48%), Gaps = 23/139 (16%)
Query: 102 IPGVRPIMPPVVRPVPLPTVTPAEK---------------------PQTKVYVGKIAPTA 140
IP IM P V +PTV+ K P T V+VG I+ A
Sbjct: 40 IPVPMSIMAPAPT-VLVPTVSMVGKHLGARKDHPGLKAKENDENCGPTTTVFVGNISEKA 98
Query: 141 DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200
+ +L CG V SWKR Q S G + FGFCE++ E LRALRLL+ I ++L
Sbjct: 99 SDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRALRLLHDLQIGEKKL 157
Query: 201 MLKVDQATREYLERYVDKK 219
++KVD T+ L+ + KK
Sbjct: 158 LVKVDAKTKAQLDEWKAKK 176
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 186
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 143
Query: 187 LRLLNKFNIDGQELMLKVDQATREYLERYVDKKTENTKKLKETQDAGA 234
LRLL+ I ++L++KVD T+ L+ + K K+ + A
Sbjct: 144 LRLLHDLQIGEKKLLVKVDAKTKAQLDEW--------KAKKKASNGNA 183
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 54.3 bits (129), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 80/137 (58%), Gaps = 15/137 (10%)
Query: 387 KEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREKERQYEKEKEK 446
K +E +R ++E E +R +ER +R K E+ ++E E ++ E ++E +RQ ++ +K
Sbjct: 2740 KRQEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQK 2799
Query: 447 ERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIR-EKEEDLADEVREEEEIAVAK 505
E E KR+++ + E+ E ++ E KR+++ R +KEE L R+E+E
Sbjct: 2800 EEELKRQEQERLEREKQEQLQKEE------ELKRQEQERLQKEEALK---RQEQE----- 2845
Query: 506 RRAEEEQLQQQQRDALK 522
R +EE+L++Q+++ L+
Sbjct: 2846 RLQKEEELKRQEQERLE 2862
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 94/150 (62%), Gaps = 15/150 (10%)
Query: 375 RGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEA-EREYERCLKDWEYRERE 433
+GRDK+R EK RE D+ ++E E++R E+ Q +++E+ E++ ++ L+ ++R+
Sbjct: 752 KGRDKKRSKDLEKCREKDQ-DKELEKDR---EKNQDKELEKGREKDQDKELEKGREKDRD 807
Query: 434 REKERQYEKEKEKE----RERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREKEE 489
+E E+ EK+++KE RE+ + KE+ +E+D D R++ R V +K R ++REK+
Sbjct: 808 KEMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKV-RDKDRDKVREKDR 866
Query: 490 DLADEVREEEEIAVAKRRAEEEQLQQQQRD 519
D+VRE++ + R + E+++++ RD
Sbjct: 867 ---DKVREKDRDKL--REKDREKIRERDRD 891
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 20/128 (15%)
Query: 354 KASDHDRPETSSPDRSRVHDRRGRDKERDLKREKEREIDRYE-REAERERVRKEREQRRK 412
K + DR + DR +V D+ RDK R+ R+K RE DR + RE +RE++R ER+ R K
Sbjct: 836 KGQEKDRDKVREKDRDKVRDK-DRDKVREKDRDKVREKDRDKLREKDREKIR-ERD-RDK 892
Query: 413 IEEAEREYERCLKDWEYREREREKERQYEKEKEKER------------ERKRKKEILYDE 460
E +R+ E+ + RE+++EKER +++KE+E+ E+KR KE+ D+
Sbjct: 893 GREKDRDKEQV----KTREKDQEKERLKDRDKEREKVRDKGRDRDRDQEKKRNKELTEDK 948
Query: 461 EEDEDDSR 468
+ E SR
Sbjct: 949 QAPEQRSR 956
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 94/152 (61%), Gaps = 16/152 (10%)
Query: 367 DRSRVHDR---RGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERC 423
DR + D+ +GR+K++D + EK RE DR ++E E+ R E++Q +++E+ RE
Sbjct: 777 DREKNQDKELEKGREKDQDKELEKGREKDR-DKEMEKAR---EKDQDKELEKG-RE---- 827
Query: 424 LKDWEYREREREKERQYEKEKEKERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKR 483
KD + +E E+ +E+ +K +EK+R++ R K+ E+D D R++ R L EK R++
Sbjct: 828 -KDQD-KELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREK-DRDKLREKDREK 884
Query: 484 IREKEEDLADEV-REEEEIAVAKRRAEEEQLQ 514
IRE++ D E R++E++ ++ E+E+L+
Sbjct: 885 IRERDRDKGREKDRDKEQVKTREKDQEKERLK 916
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 33.1 bits (74), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 27/106 (25%)
Query: 384 KREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYRERE-REKERQYEK 442
K +KE+EI RE+ +E+EQR E RE E L+D + RE+E REKE ++
Sbjct: 1998 KEQKEKEI--------REKDLREKEQR---ERDNREKE--LRDKDLREKEMREKE---QR 2041
Query: 443 EKEKERERKRKKEILYDEEEDEDDSRKRWRRS--VLEEKRRKRIRE 486
EKE RE+ D+ E E +++ RR+ V +E R R+RE
Sbjct: 2042 EKELHREK--------DQREREHREKEQSRRAMDVEQEGRGGRMRE 2079
>sp|P46504|YLX8_CAEEL Uncharacterized protein F23F12.8 OS=Caenorhabditis elegans
GN=F23F12.8 PE=4 SV=2
Length = 980
Score = 32.7 bits (73), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 4/116 (3%)
Query: 398 AERERVRKEREQRRKIEEAEREYERCLKDWEYREREREKERQYEKEKEKERERKRKKEIL 457
+ ++ ER+Q+ K E+ E+E R K+ + RE ER ++ + E E ++ E R+ I
Sbjct: 302 VQHQKTVSERQQQEKFEKMEQERLRQEKEEKARELERRRKLE-ESETARQAELDRQATIY 360
Query: 458 YDEEEDEDDSRKRWRRSVLEEKRRKRIREKEEDLADE---VREEEEIAVAKRRAEE 510
++E + + R LEEK+R+ R ++E++A E +RE E + + ++R E
Sbjct: 361 AEQERMAMERNRELERIRLEEKKRENERVRQEEIAMEISKIRELERLQLERQRKNE 416
>sp|C0H5F4|RBP2B_PLAF7 Reticulocyte binding protein 2 homolog b OS=Plasmodium falciparum
(isolate 3D7) GN=Rh2b PE=3 SV=1
Length = 3179
Score = 32.7 bits (73), Expect = 7.5, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 23/101 (22%)
Query: 373 DRRGRDKERDLKRE--------------KEREIDRYEREAERERVRKERE-QRRKIEEAE 417
+R R+K+ LK+E KE + R E+ER++KE E +R++ E E
Sbjct: 2631 ERLEREKQEQLKKEALKKQEQERQEQQQKEEALKR----QEQERLQKEEELKRQEQERLE 2686
Query: 418 RE-YERCLKDWEYREREREKERQYEKEKEKERERKRKKEIL 457
RE E+ K+ E R++E+EK++Q +E E ++K EI+
Sbjct: 2687 REKQEQLQKEEELRKKEQEKQQQ---RNIQELEEQKKPEII 2724
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 232,623,033
Number of Sequences: 539616
Number of extensions: 11764205
Number of successful extensions: 222028
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2305
Number of HSP's successfully gapped in prelim test: 5150
Number of HSP's that attempted gapping in prelim test: 90517
Number of HSP's gapped (non-prelim): 51997
length of query: 577
length of database: 191,569,459
effective HSP length: 123
effective length of query: 454
effective length of database: 125,196,691
effective search space: 56839297714
effective search space used: 56839297714
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)