Query 008117
Match_columns 577
No_of_seqs 477 out of 3158
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 19:40:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2253 U1 snRNP complex, subu 99.9 1.9E-23 4.2E-28 221.7 20.9 337 126-521 38-384 (668)
2 TIGR01659 sex-lethal sex-letha 99.9 6.3E-23 1.4E-27 213.5 21.8 156 125-295 104-260 (346)
3 TIGR01645 half-pint poly-U bin 99.9 3.4E-21 7.5E-26 210.6 13.6 164 126-293 105-269 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 9.2E-21 2E-25 199.7 15.3 153 127-294 2-155 (352)
5 TIGR01628 PABP-1234 polyadenyl 99.8 1.1E-19 2.3E-24 203.5 14.7 152 130-294 2-153 (562)
6 KOG0117 Heterogeneous nuclear 99.8 1.6E-19 3.5E-24 183.5 13.4 148 123-291 78-229 (506)
7 KOG0148 Apoptosis-promoting RN 99.8 1E-19 2.2E-24 174.3 11.0 160 126-293 60-223 (321)
8 TIGR01622 SF-CC1 splicing fact 99.8 3.4E-19 7.4E-24 194.5 15.1 166 124-293 85-251 (457)
9 KOG0144 RNA-binding protein CU 99.8 9.1E-19 2E-23 177.3 12.6 161 123-297 29-192 (510)
10 TIGR01648 hnRNP-R-Q heterogene 99.8 1.8E-18 3.8E-23 189.2 15.0 143 127-291 57-203 (578)
11 KOG0145 RNA-binding protein EL 99.8 2.2E-18 4.8E-23 164.0 13.0 154 125-293 38-192 (360)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.8E-18 6.1E-23 180.8 13.1 167 127-293 88-334 (352)
13 KOG0131 Splicing factor 3b, su 99.8 3.5E-18 7.6E-23 155.2 9.7 156 126-295 7-164 (203)
14 TIGR01628 PABP-1234 polyadenyl 99.7 7.1E-18 1.5E-22 188.8 14.4 166 126-293 176-349 (562)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.7 1.3E-17 2.9E-22 184.4 14.4 165 123-294 170-361 (509)
16 KOG4661 Hsp27-ERE-TATA-binding 99.7 1.2E-15 2.6E-20 158.6 26.5 83 125-207 402-484 (940)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 1.1E-16 2.3E-21 175.5 18.7 163 125-293 272-459 (481)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.7 9.9E-17 2.1E-21 177.5 16.0 166 126-293 293-487 (509)
19 KOG0124 Polypyrimidine tract-b 99.7 3.7E-17 8.1E-22 162.0 5.9 155 127-293 112-275 (544)
20 KOG0127 Nucleolar protein fibr 99.6 3.3E-16 7.2E-21 162.7 9.3 166 128-293 5-181 (678)
21 PLN03134 glycine-rich RNA-bind 99.6 1.9E-15 4.1E-20 138.4 11.7 82 126-207 32-113 (144)
22 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.3E-15 2.9E-20 166.9 12.5 156 127-294 1-158 (481)
23 KOG0123 Polyadenylate-binding 99.6 1.3E-15 2.9E-20 159.6 9.2 134 129-296 2-141 (369)
24 KOG0109 RNA-binding protein LA 99.6 1.9E-15 4.2E-20 146.4 8.9 133 129-293 3-135 (346)
25 TIGR01622 SF-CC1 splicing fact 99.6 6.8E-15 1.5E-19 160.7 14.3 79 128-206 186-264 (457)
26 KOG0127 Nucleolar protein fibr 99.6 5.9E-15 1.3E-19 153.6 11.8 162 126-290 115-354 (678)
27 TIGR01648 hnRNP-R-Q heterogene 99.6 6.4E-15 1.4E-19 161.4 10.4 150 127-293 137-292 (578)
28 KOG0146 RNA-binding protein ET 99.6 6.8E-15 1.5E-19 140.8 8.7 87 119-205 276-362 (371)
29 KOG0123 Polyadenylate-binding 99.6 1.5E-14 3.2E-19 151.7 11.3 150 131-296 79-234 (369)
30 KOG0117 Heterogeneous nuclear 99.6 1E-14 2.2E-19 148.9 9.2 150 126-293 162-316 (506)
31 KOG0110 RNA-binding protein (R 99.5 2.7E-14 5.8E-19 153.4 10.1 157 129-292 516-677 (725)
32 PF00076 RRM_1: RNA recognitio 99.5 8.6E-14 1.9E-18 110.6 9.9 70 131-201 1-70 (70)
33 KOG0147 Transcriptional coacti 99.5 2.4E-14 5.2E-19 150.0 7.3 168 124-293 175-343 (549)
34 KOG0121 Nuclear cap-binding pr 99.5 4.5E-14 9.7E-19 121.4 7.2 83 126-208 34-116 (153)
35 KOG0113 U1 small nuclear ribon 99.5 1.1E-13 2.4E-18 134.9 10.9 83 125-207 98-180 (335)
36 KOG0125 Ataxin 2-binding prote 99.5 4.3E-13 9.4E-18 132.3 14.3 82 125-208 93-174 (376)
37 KOG0122 Translation initiation 99.5 6.1E-13 1.3E-17 126.6 13.3 82 126-207 187-268 (270)
38 KOG0415 Predicted peptidyl pro 99.4 8.3E-13 1.8E-17 131.1 11.2 85 125-209 236-320 (479)
39 KOG0149 Predicted RNA-binding 99.4 2.9E-13 6.2E-18 128.4 7.2 81 125-206 9-89 (247)
40 PF14259 RRM_6: RNA recognitio 99.4 2E-12 4.4E-17 103.2 9.7 70 131-201 1-70 (70)
41 KOG4207 Predicted splicing fac 99.4 8.2E-13 1.8E-17 122.5 7.2 82 126-207 11-92 (256)
42 TIGR01645 half-pint poly-U bin 99.4 1.9E-12 4.1E-17 142.4 11.2 82 126-207 202-283 (612)
43 PLN03120 nucleic acid binding 99.4 2.7E-12 5.8E-17 126.0 10.6 76 128-207 4-79 (260)
44 TIGR01659 sex-lethal sex-letha 99.4 2.8E-12 6E-17 133.9 11.0 81 127-207 192-274 (346)
45 KOG0145 RNA-binding protein EL 99.4 6.5E-12 1.4E-16 120.1 12.4 81 126-206 276-356 (360)
46 KOG0107 Alternative splicing f 99.3 2.1E-12 4.5E-17 117.2 7.9 76 127-207 9-84 (195)
47 KOG0126 Predicted RNA-binding 99.3 1.4E-13 3E-18 125.2 0.0 81 125-205 32-112 (219)
48 PLN03213 repressor of silencin 99.3 3.9E-12 8.4E-17 131.1 10.0 85 126-216 8-94 (759)
49 KOG0146 RNA-binding protein ET 99.3 1.2E-11 2.5E-16 118.8 11.1 81 127-208 18-101 (371)
50 KOG4205 RNA-binding protein mu 99.3 1.2E-12 2.6E-17 133.0 4.3 154 127-290 5-159 (311)
51 smart00362 RRM_2 RNA recogniti 99.3 1.9E-11 4.1E-16 96.4 9.8 71 130-202 1-71 (72)
52 KOG0105 Alternative splicing f 99.3 1.5E-11 3.3E-16 112.3 9.8 154 126-292 4-172 (241)
53 KOG0130 RNA-binding protein RB 99.3 6.3E-12 1.4E-16 109.1 6.9 82 126-207 70-151 (170)
54 PLN03121 nucleic acid binding 99.3 1.6E-11 3.5E-16 118.6 10.4 76 127-206 4-79 (243)
55 KOG0108 mRNA cleavage and poly 99.3 7.9E-12 1.7E-16 132.3 8.3 82 129-210 19-100 (435)
56 KOG0111 Cyclophilin-type pepti 99.2 4.4E-12 9.5E-17 118.6 3.6 84 126-209 8-91 (298)
57 smart00360 RRM RNA recognition 99.2 4.9E-11 1.1E-15 93.6 9.2 70 133-202 1-70 (71)
58 KOG4206 Spliceosomal protein s 99.2 4.5E-11 9.7E-16 113.4 10.2 152 128-292 9-205 (221)
59 KOG0148 Apoptosis-promoting RN 99.2 3.1E-11 6.8E-16 116.4 9.2 78 125-208 161-238 (321)
60 KOG0114 Predicted RNA-binding 99.2 9.9E-11 2.1E-15 97.3 10.7 84 126-212 16-99 (124)
61 KOG4212 RNA-binding protein hn 99.2 1.4E-10 3.1E-15 118.2 13.3 165 126-291 42-277 (608)
62 KOG0144 RNA-binding protein CU 99.2 1.2E-10 2.6E-15 118.9 12.7 83 125-207 421-503 (510)
63 COG0724 RNA-binding proteins ( 99.2 7.1E-11 1.5E-15 118.2 10.4 79 128-206 115-193 (306)
64 cd00590 RRM RRM (RNA recogniti 99.2 2.4E-10 5.2E-15 90.5 10.4 74 130-204 1-74 (74)
65 KOG1457 RNA binding protein (c 99.1 3.9E-10 8.6E-15 106.0 11.7 83 126-208 32-118 (284)
66 KOG0124 Polypyrimidine tract-b 99.1 2.8E-10 6E-15 113.7 7.6 101 104-206 181-288 (544)
67 smart00361 RRM_1 RNA recogniti 99.0 1.1E-09 2.5E-14 87.5 8.7 61 142-202 2-69 (70)
68 KOG0226 RNA-binding proteins [ 99.0 2.5E-09 5.3E-14 102.7 12.2 89 125-213 187-275 (290)
69 KOG0147 Transcriptional coacti 99.0 3.1E-10 6.8E-15 119.5 6.3 77 128-204 278-354 (549)
70 PF13893 RRM_5: RNA recognitio 99.0 1.6E-09 3.5E-14 82.5 8.5 56 145-205 1-56 (56)
71 KOG4211 Splicing factor hnRNP- 99.0 6.2E-09 1.3E-13 108.5 12.7 163 127-297 9-172 (510)
72 KOG0106 Alternative splicing f 98.9 7.3E-10 1.6E-14 106.2 5.2 151 129-294 2-157 (216)
73 KOG0109 RNA-binding protein LA 98.9 8.4E-10 1.8E-14 107.7 5.1 76 125-208 75-150 (346)
74 KOG0131 Splicing factor 3b, su 98.9 1.4E-09 3E-14 99.6 5.8 81 127-207 95-176 (203)
75 KOG4208 Nucleolar RNA-binding 98.9 6.8E-09 1.5E-13 97.2 9.8 85 124-208 45-130 (214)
76 KOG1548 Transcription elongati 98.9 1.4E-08 3E-13 101.6 11.4 86 120-206 126-219 (382)
77 KOG0120 Splicing factor U2AF, 98.9 8.2E-09 1.8E-13 110.2 9.9 167 125-293 286-477 (500)
78 KOG4454 RNA binding protein (R 98.8 5.1E-09 1.1E-13 98.4 4.1 76 127-204 8-83 (267)
79 KOG4676 Splicing factor, argin 98.7 4.4E-09 9.5E-14 106.3 2.2 79 128-207 7-89 (479)
80 KOG0153 Predicted RNA-binding 98.7 3.3E-08 7.1E-13 99.0 8.3 79 123-207 223-302 (377)
81 KOG0132 RNA polymerase II C-te 98.7 2.5E-08 5.4E-13 108.7 7.7 74 128-207 421-494 (894)
82 KOG0110 RNA-binding protein (R 98.7 2.4E-08 5.3E-13 108.1 5.6 86 125-210 610-695 (725)
83 KOG1190 Polypyrimidine tract-b 98.7 3.4E-07 7.4E-12 93.4 13.4 155 128-291 297-473 (492)
84 KOG0151 Predicted splicing reg 98.5 2.4E-07 5.1E-12 100.2 8.9 85 123-207 169-256 (877)
85 KOG4212 RNA-binding protein hn 98.5 1.9E-07 4.2E-12 95.7 7.7 75 125-204 533-607 (608)
86 KOG4676 Splicing factor, argin 98.5 3.4E-08 7.4E-13 100.0 1.6 66 126-196 149-214 (479)
87 KOG0116 RasGAP SH3 binding pro 98.5 5.4E-07 1.2E-11 95.4 9.6 77 127-204 287-363 (419)
88 KOG0533 RRM motif-containing p 98.5 5.6E-07 1.2E-11 88.4 8.8 82 125-207 80-161 (243)
89 KOG4209 Splicing factor RNPS1, 98.4 2.5E-07 5.4E-12 91.0 6.0 80 125-205 98-177 (231)
90 KOG1924 RhoA GTPase effector D 98.4 7.9E-07 1.7E-11 97.1 9.4 8 127-134 640-647 (1102)
91 KOG0226 RNA-binding proteins [ 98.4 9.4E-07 2E-11 85.2 8.5 154 128-293 96-255 (290)
92 KOG0120 Splicing factor U2AF, 98.4 7.5E-07 1.6E-11 95.5 7.3 165 122-293 169-354 (500)
93 KOG2416 Acinus (induces apopto 98.3 4E-07 8.7E-12 96.7 4.8 78 124-207 440-521 (718)
94 KOG4205 RNA-binding protein mu 98.3 6E-07 1.3E-11 91.6 5.8 81 127-208 96-176 (311)
95 KOG0128 RNA-binding protein SA 98.3 1.4E-07 3E-12 104.3 -0.9 135 127-293 666-800 (881)
96 KOG4660 Protein Mei2, essentia 98.3 9.9E-07 2.2E-11 93.7 5.4 72 125-201 72-143 (549)
97 KOG1924 RhoA GTPase effector D 98.2 1.7E-05 3.7E-10 87.0 12.3 11 34-44 524-534 (1102)
98 KOG1456 Heterogeneous nuclear 98.1 0.00012 2.7E-09 74.3 17.1 160 125-293 284-470 (494)
99 PF04059 RRM_2: RNA recognitio 98.1 2.8E-05 6E-10 65.8 9.8 77 129-205 2-84 (97)
100 KOG0129 Predicted RNA-binding 98.0 0.00035 7.6E-09 74.2 17.5 161 126-289 257-432 (520)
101 KOG4661 Hsp27-ERE-TATA-binding 97.9 0.0003 6.4E-09 74.9 15.2 59 232-292 408-469 (940)
102 PF11608 Limkain-b1: Limkain b 97.9 5.6E-05 1.2E-09 61.2 7.0 71 129-209 3-78 (90)
103 KOG1995 Conserved Zn-finger pr 97.8 4.4E-05 9.5E-10 77.6 7.6 83 125-207 63-153 (351)
104 KOG1457 RNA binding protein (c 97.8 7.2E-05 1.6E-09 71.1 8.4 66 126-195 208-273 (284)
105 KOG4210 Nuclear localization s 97.8 2E-05 4.4E-10 80.2 4.6 158 126-288 86-245 (285)
106 KOG4307 RNA binding protein RB 97.7 0.00037 8E-09 75.9 13.3 76 128-204 867-943 (944)
107 KOG0122 Translation initiation 97.7 1.7E-05 3.7E-10 76.4 2.9 65 229-293 189-254 (270)
108 KOG4307 RNA binding protein RB 97.7 0.00028 6.1E-09 76.8 11.8 158 128-287 311-493 (944)
109 PLN03134 glycine-rich RNA-bind 97.7 2.3E-05 4.9E-10 71.9 3.0 62 232-293 37-99 (144)
110 KOG1029 Endocytic adaptor prot 97.7 0.024 5.2E-07 63.0 26.1 12 293-304 257-268 (1118)
111 KOG1365 RNA-binding protein Fu 97.6 9E-05 2E-09 75.4 5.5 165 128-295 161-349 (508)
112 KOG4849 mRNA cleavage factor I 97.6 0.0021 4.6E-08 64.9 14.9 32 131-162 348-379 (498)
113 KOG0149 Predicted RNA-binding 97.5 2.4E-05 5.1E-10 75.1 0.1 72 226-298 10-82 (247)
114 KOG4849 mRNA cleavage factor I 97.5 0.00017 3.6E-09 72.6 6.1 88 126-213 78-168 (498)
115 PF00076 RRM_1: RNA recognitio 97.5 2.8E-05 6.2E-10 61.1 0.2 62 232-293 1-62 (70)
116 KOG1029 Endocytic adaptor prot 97.4 0.11 2.3E-06 58.1 26.4 26 280-305 248-273 (1118)
117 KOG3152 TBP-binding protein, a 97.4 0.0001 2.2E-09 71.5 3.1 73 127-199 73-157 (278)
118 KOG4210 Nuclear localization s 97.3 0.00011 2.3E-09 75.0 2.5 80 127-207 183-263 (285)
119 KOG4206 Spliceosomal protein s 97.3 0.0011 2.5E-08 63.5 9.1 78 124-206 142-220 (221)
120 KOG0129 Predicted RNA-binding 97.2 0.00061 1.3E-08 72.4 7.0 64 126-189 368-432 (520)
121 KOG2314 Translation initiation 97.2 0.0012 2.6E-08 70.5 8.7 78 126-204 56-140 (698)
122 KOG0113 U1 small nuclear ribon 97.2 0.00061 1.3E-08 67.6 6.0 79 212-293 85-166 (335)
123 KOG0106 Alternative splicing f 97.2 0.00029 6.2E-09 68.1 3.3 70 125-202 96-165 (216)
124 PF08777 RRM_3: RNA binding mo 97.1 0.001 2.2E-08 57.4 5.4 83 129-217 2-91 (105)
125 COG5175 MOT2 Transcriptional r 97.0 0.0016 3.5E-08 65.5 7.0 80 128-207 114-202 (480)
126 KOG0112 Large RNA-binding prot 96.9 0.00035 7.6E-09 78.3 1.3 145 126-293 370-514 (975)
127 PF14259 RRM_6: RNA recognitio 96.9 0.0006 1.3E-08 53.9 2.2 59 233-291 2-60 (70)
128 KOG1855 Predicted RNA-binding 96.9 0.001 2.2E-08 69.1 4.2 81 115-195 218-311 (484)
129 KOG0125 Ataxin 2-binding prote 96.9 0.00049 1.1E-08 69.1 1.9 66 230-296 97-162 (376)
130 KOG4211 Splicing factor hnRNP- 96.8 0.003 6.4E-08 66.9 7.2 75 127-203 102-177 (510)
131 KOG1365 RNA-binding protein Fu 96.8 0.0077 1.7E-07 61.7 9.6 169 127-297 59-233 (508)
132 KOG1456 Heterogeneous nuclear 96.7 0.0062 1.3E-07 62.2 8.0 143 127-293 30-182 (494)
133 KOG1190 Polypyrimidine tract-b 96.7 0.0038 8.2E-08 64.5 6.5 78 126-207 412-490 (492)
134 PF08952 DUF1866: Domain of un 96.6 0.0083 1.8E-07 54.3 8.0 71 126-205 25-104 (146)
135 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.0098 2.1E-07 50.7 8.0 78 128-207 6-91 (100)
136 KOG4208 Nucleolar RNA-binding 96.6 0.0022 4.7E-08 60.7 4.2 64 231-294 51-116 (214)
137 KOG0126 Predicted RNA-binding 96.6 0.00026 5.7E-09 65.4 -2.2 63 231-293 37-100 (219)
138 KOG0415 Predicted peptidyl pro 96.5 0.003 6.6E-08 64.0 4.8 65 225-294 235-305 (479)
139 PLN03120 nucleic acid binding 96.4 0.0016 3.5E-08 64.6 2.3 59 231-292 6-64 (260)
140 KOG0105 Alternative splicing f 96.3 0.012 2.6E-07 54.8 7.2 65 125-196 112-176 (241)
141 KOG0107 Alternative splicing f 96.3 0.0014 3.1E-08 60.4 1.1 59 232-294 13-71 (195)
142 KOG0108 mRNA cleavage and poly 96.3 0.0028 6E-08 68.0 3.5 61 231-293 20-83 (435)
143 KOG1548 Transcription elongati 96.3 0.012 2.5E-07 59.9 7.4 78 126-207 263-351 (382)
144 PLN03213 repressor of silencin 96.2 0.0023 5E-08 67.3 2.0 59 232-293 13-73 (759)
145 KOG0114 Predicted RNA-binding 96.2 0.0039 8.5E-08 52.6 2.9 63 227-294 16-81 (124)
146 PF14605 Nup35_RRM_2: Nup53/35 96.1 0.012 2.7E-07 44.0 5.2 52 129-187 2-53 (53)
147 KOG0130 RNA-binding protein RB 96.1 0.0036 7.8E-08 55.2 2.2 65 229-293 72-137 (170)
148 smart00361 RRM_1 RNA recogniti 96.0 0.0085 1.8E-07 47.6 3.9 27 267-293 34-60 (70)
149 KOG0111 Cyclophilin-type pepti 95.9 0.0045 9.8E-08 58.9 2.2 62 229-292 10-74 (298)
150 smart00362 RRM_2 RNA recogniti 95.9 0.0061 1.3E-07 47.0 2.7 60 232-292 2-61 (72)
151 PLN03121 nucleic acid binding 95.8 0.0048 1E-07 60.4 2.2 65 231-297 7-71 (243)
152 KOG0121 Nuclear cap-binding pr 95.8 0.0061 1.3E-07 53.4 2.3 65 229-293 36-101 (153)
153 KOG4207 Predicted splicing fac 95.8 0.0047 1E-07 58.4 1.7 65 232-296 16-81 (256)
154 smart00360 RRM RNA recognition 95.7 0.0068 1.5E-07 46.5 2.4 59 234-292 1-60 (71)
155 COG0724 RNA-binding proteins ( 95.6 0.007 1.5E-07 60.0 2.5 63 230-292 116-179 (306)
156 KOG0128 RNA-binding protein SA 95.6 0.0047 1E-07 69.3 1.2 79 128-207 736-814 (881)
157 KOG1923 Rac1 GTPase effector F 95.4 0.056 1.2E-06 60.4 8.5 11 289-299 562-572 (830)
158 KOG1996 mRNA splicing factor [ 95.2 0.058 1.3E-06 53.7 7.1 63 143-205 301-364 (378)
159 KOG2193 IGF-II mRNA-binding pr 95.1 0.023 5E-07 59.0 4.2 73 129-208 2-76 (584)
160 KOG0112 Large RNA-binding prot 95.0 0.05 1.1E-06 61.7 6.9 79 124-208 451-531 (975)
161 KOG0115 RNA-binding protein p5 94.7 0.034 7.5E-07 54.4 4.1 62 129-191 32-93 (275)
162 KOG2416 Acinus (induces apopto 94.6 0.039 8.6E-07 59.7 4.5 63 226-293 441-504 (718)
163 PF15023 DUF4523: Protein of u 94.3 0.17 3.7E-06 45.4 7.2 75 125-207 83-161 (166)
164 cd00590 RRM RRM (RNA recogniti 94.3 0.033 7.2E-07 43.0 2.5 61 233-293 3-63 (74)
165 KOG2202 U2 snRNP splicing fact 94.1 0.027 5.9E-07 55.2 2.0 63 144-207 84-147 (260)
166 KOG4285 Mitotic phosphoprotein 93.6 2.5 5.3E-05 42.7 14.5 62 130-199 199-260 (350)
167 PF10309 DUF2414: Protein of u 93.4 0.38 8.2E-06 37.2 6.7 55 128-190 5-62 (62)
168 KOG1923 Rac1 GTPase effector F 93.2 0.43 9.4E-06 53.6 9.5 7 9-15 244-250 (830)
169 KOG2068 MOT2 transcription fac 93.2 0.033 7.1E-07 56.8 0.9 78 128-206 77-161 (327)
170 KOG4574 RNA-binding protein (c 93.2 0.31 6.6E-06 55.2 8.3 76 128-209 298-375 (1007)
171 PF08675 RNA_bind: RNA binding 91.7 0.55 1.2E-05 38.4 5.9 56 128-192 9-64 (87)
172 PF04847 Calcipressin: Calcipr 91.1 0.5 1.1E-05 45.0 6.1 62 141-208 8-71 (184)
173 PF07576 BRAP2: BRCA1-associat 91.1 2.2 4.7E-05 37.1 9.5 67 128-196 13-80 (110)
174 KOG4672 Uncharacterized conser 90.8 1.2 2.6E-05 46.6 8.8 10 284-293 477-486 (487)
175 PF03467 Smg4_UPF3: Smg-4/UPF3 90.8 0.31 6.6E-06 46.2 4.3 81 127-207 6-97 (176)
176 PF03880 DbpA: DbpA RNA bindin 89.6 1.7 3.7E-05 34.8 7.2 67 130-205 2-74 (74)
177 KOG4246 Predicted DNA-binding 89.5 1.2 2.6E-05 50.5 8.0 9 128-136 145-153 (1194)
178 KOG2253 U1 snRNP complex, subu 89.3 6.5 0.00014 43.9 13.3 11 480-490 354-364 (668)
179 KOG2135 Proteins containing th 89.1 0.22 4.8E-06 52.8 2.0 73 128-207 372-445 (526)
180 KOG2591 c-Mpl binding protein, 88.7 4.9 0.00011 43.8 11.6 70 127-203 174-247 (684)
181 PF13893 RRM_5: RNA recognitio 87.7 0.74 1.6E-05 34.4 3.6 24 270-293 21-44 (56)
182 KOG0116 RasGAP SH3 binding pro 86.9 0.3 6.5E-06 52.4 1.4 64 232-295 291-355 (419)
183 KOG1925 Rac1 GTPase effector F 86.7 1.9 4.1E-05 46.3 7.1 28 124-151 302-329 (817)
184 KOG0804 Cytoplasmic Zn-finger 85.8 2.8 6E-05 44.6 7.7 69 126-197 72-142 (493)
185 KOG4660 Protein Mei2, essentia 85.6 1.3 2.8E-05 48.2 5.3 54 152-205 413-470 (549)
186 COG5178 PRP8 U5 snRNP spliceos 85.5 0.68 1.5E-05 54.0 3.3 37 127-163 71-107 (2365)
187 PHA03378 EBNA-3B; Provisional 84.9 8.2 0.00018 43.2 11.0 12 139-150 819-830 (991)
188 KOG0533 RRM motif-containing p 84.6 0.61 1.3E-05 46.3 2.2 62 232-294 86-148 (243)
189 KOG2318 Uncharacterized conser 84.2 4.5 9.7E-05 44.4 8.5 80 125-204 171-304 (650)
190 KOG4209 Splicing factor RNPS1, 83.2 0.99 2.1E-05 44.7 3.1 61 231-292 103-164 (231)
191 KOG0151 Predicted splicing reg 81.8 0.88 1.9E-05 50.7 2.2 68 226-296 172-245 (877)
192 PF11600 CAF-1_p150: Chromatin 80.7 59 0.0013 31.8 16.1 11 501-511 162-172 (216)
193 PF11767 SET_assoc: Histone ly 77.7 7.9 0.00017 30.4 5.8 55 139-202 11-65 (66)
194 KOG2375 Protein interacting wi 75.8 14 0.00029 42.5 9.2 27 3-29 541-568 (756)
195 KOG0115 RNA-binding protein p5 75.4 3.1 6.7E-05 41.2 3.6 83 182-291 6-93 (275)
196 KOG1830 Wiskott Aldrich syndro 75.2 26 0.00056 37.2 10.4 7 182-188 458-464 (518)
197 PF03276 Gag_spuma: Spumavirus 74.3 5.5 0.00012 43.5 5.5 31 156-187 305-337 (582)
198 KOG4592 Uncharacterized conser 73.9 9.4 0.0002 42.3 7.1 7 192-198 335-341 (728)
199 KOG4454 RNA binding protein (R 71.3 1.4 3.1E-05 42.5 0.2 56 232-293 12-72 (267)
200 KOG4483 Uncharacterized conser 70.8 83 0.0018 33.4 12.7 55 128-189 391-446 (528)
201 KOG0153 Predicted RNA-binding 69.5 2.3 5E-05 43.8 1.3 51 232-293 231-287 (377)
202 KOG2888 Putative RNA binding p 68.2 4.5 9.8E-05 41.3 3.0 19 199-217 162-180 (453)
203 KOG4246 Predicted DNA-binding 68.1 2 4.3E-05 48.8 0.6 24 169-193 157-180 (1194)
204 KOG0162 Myosin class I heavy c 64.9 43 0.00093 38.2 9.8 8 151-158 1071-1078(1106)
205 PHA03378 EBNA-3B; Provisional 64.1 1E+02 0.0022 35.0 12.5 10 5-14 665-674 (991)
206 KOG4019 Calcineurin-mediated s 63.7 6 0.00013 37.2 2.7 76 127-208 9-90 (193)
207 KOG1984 Vesicle coat complex C 63.7 39 0.00084 39.3 9.4 9 197-205 358-366 (1007)
208 KOG2891 Surface glycoprotein [ 61.6 1.8E+02 0.004 29.2 15.0 21 141-161 174-194 (445)
209 KOG2891 Surface glycoprotein [ 61.0 1.9E+02 0.0041 29.2 15.2 10 268-277 211-220 (445)
210 KOG2295 C2H2 Zn-finger protein 56.6 1.8 3.9E-05 47.0 -2.2 69 128-196 231-299 (648)
211 KOG4410 5-formyltetrahydrofola 56.5 71 0.0015 32.3 8.8 48 128-181 330-378 (396)
212 KOG1985 Vesicle coat complex C 56.2 1.3E+02 0.0028 35.1 11.8 10 197-206 238-247 (887)
213 PF04059 RRM_2: RNA recognitio 55.7 14 0.0003 31.4 3.4 56 233-292 5-67 (97)
214 KOG4368 Predicted RNA binding 52.4 40 0.00086 37.3 6.9 6 292-297 558-563 (757)
215 PRK11901 hypothetical protein; 51.5 2.2E+02 0.0047 29.6 11.7 61 127-192 244-306 (327)
216 smart00596 PRE_C2HC PRE_C2HC d 46.6 27 0.00059 27.6 3.4 58 143-203 2-60 (69)
217 KOG1144 Translation initiation 46.1 1.9E+02 0.0042 33.6 11.1 7 501-507 282-288 (1064)
218 KOG0163 Myosin class VI heavy 45.9 5.3E+02 0.011 30.1 14.3 8 274-281 586-593 (1259)
219 KOG0917 Uncharacterized conser 45.9 1.4E+02 0.0029 30.2 8.8 12 3-14 146-157 (338)
220 KOG2193 IGF-II mRNA-binding pr 45.4 18 0.00039 38.4 2.9 58 232-296 4-63 (584)
221 KOG4840 Predicted hydrolases o 44.5 41 0.00089 33.1 5.0 85 127-211 36-121 (299)
222 KOG0670 U4/U6-associated splic 43.0 8 0.00017 42.5 -0.0 27 482-508 270-296 (752)
223 PRK14950 DNA polymerase III su 40.7 1.1E+02 0.0023 34.9 8.5 11 194-204 497-507 (585)
224 KOG0905 Phosphoinositide 3-kin 40.0 2E+02 0.0044 35.0 10.4 7 290-296 345-351 (1639)
225 KOG1995 Conserved Zn-finger pr 39.8 25 0.00054 36.6 2.9 59 233-291 70-137 (351)
226 COG5178 PRP8 U5 snRNP spliceos 39.0 26 0.00056 41.8 3.2 18 62-79 5-22 (2365)
227 PF03154 Atrophin-1: Atrophin- 38.4 19 0.0004 42.3 2.0 41 410-450 582-623 (982)
228 PRK00247 putative inner membra 38.4 5.2E+02 0.011 28.2 12.7 9 141-149 145-153 (429)
229 KOG2888 Putative RNA binding p 37.2 13 0.00029 38.0 0.5 8 171-178 161-168 (453)
230 KOG3161 Predicted E3 ubiquitin 37.0 2.6E+02 0.0056 31.8 10.1 8 170-177 669-676 (861)
231 KOG2675 Adenylate cyclase-asso 36.8 42 0.0009 36.0 4.1 9 175-183 385-393 (480)
232 KOG1546 Metacaspase involved i 36.5 3.6E+02 0.0079 28.1 10.5 71 128-205 64-146 (362)
233 KOG1985 Vesicle coat complex C 35.7 2E+02 0.0043 33.7 9.3 8 173-180 230-237 (887)
234 KOG4709 Uncharacterized conser 35.6 2.5E+02 0.0054 26.9 8.5 22 528-549 93-114 (217)
235 PF10567 Nab6_mRNP_bdg: RNA-re 35.0 75 0.0016 32.4 5.3 79 127-205 14-105 (309)
236 PF07530 PRE_C2HC: Associated 33.9 69 0.0015 25.2 4.0 59 143-204 2-61 (68)
237 PF09707 Cas_Cas2CT1978: CRISP 33.7 66 0.0014 26.7 4.0 47 128-177 25-71 (86)
238 PRK14959 DNA polymerase III su 33.7 1E+02 0.0022 35.3 6.8 26 135-160 541-567 (624)
239 PF05518 Totivirus_coat: Totiv 33.3 3.7E+02 0.0079 31.3 10.9 8 10-17 630-637 (759)
240 KOG0796 Spliceosome subunit [R 33.1 12 0.00026 38.4 -0.5 17 279-295 146-162 (319)
241 PF08777 RRM_3: RNA binding mo 32.0 35 0.00075 29.4 2.2 22 272-293 39-60 (105)
242 KOG0835 Cyclin L [General func 31.2 60 0.0013 33.6 4.0 17 172-188 175-191 (367)
243 PRK14950 DNA polymerase III su 30.7 1.9E+02 0.0042 32.8 8.6 9 196-204 533-541 (585)
244 PF15513 DUF4651: Domain of un 30.5 1E+02 0.0022 23.9 4.2 19 143-161 9-27 (62)
245 KOG0334 RNA helicase [RNA proc 30.3 55 0.0012 38.9 4.0 32 483-514 142-173 (997)
246 PF07462 MSP1_C: Merozoite sur 29.8 1.2E+02 0.0025 33.7 6.1 17 171-187 372-388 (574)
247 KOG0163 Myosin class VI heavy 29.6 5.2E+02 0.011 30.1 11.1 12 4-15 271-282 (1259)
248 KOG2932 E3 ubiquitin ligase in 29.3 4.9E+02 0.011 26.9 9.9 18 2-19 233-250 (389)
249 PF03468 XS: XS domain; Inter 29.3 1.2E+02 0.0027 26.5 5.2 46 140-188 29-75 (116)
250 KOG2314 Translation initiation 27.3 51 0.0011 36.4 2.9 29 265-293 100-128 (698)
251 PF11608 Limkain-b1: Limkain b 26.7 85 0.0019 26.0 3.4 25 269-293 38-62 (90)
252 KOG4008 rRNA processing protei 23.9 45 0.00097 32.8 1.6 34 126-159 38-71 (261)
253 KOG4643 Uncharacterized coiled 22.8 2.5E+02 0.0054 33.6 7.4 24 140-163 1151-1174(1195)
254 KOG2591 c-Mpl binding protein, 22.4 1.2E+02 0.0027 33.5 4.7 63 231-297 177-239 (684)
255 KOG0670 U4/U6-associated splic 22.1 23 0.00049 39.1 -0.8 16 498-513 275-290 (752)
256 KOG3702 Nuclear polyadenylated 22.0 1.3E+02 0.0029 34.0 4.9 74 128-202 511-584 (681)
257 PRK07764 DNA polymerase III su 21.9 7.3E+02 0.016 29.6 11.3 12 173-184 548-559 (824)
258 PRK11558 putative ssRNA endonu 21.7 1.2E+02 0.0026 25.8 3.5 51 127-180 26-76 (97)
259 KOG1855 Predicted RNA-binding 21.6 71 0.0015 34.2 2.6 62 232-293 234-309 (484)
260 KOG1295 Nonsense-mediated deca 20.5 99 0.0021 32.7 3.4 68 128-195 7-77 (376)
261 PHA01732 proline-rich protein 20.2 1.7E+02 0.0037 24.2 3.9 6 156-161 65-70 (94)
262 KOG4365 Uncharacterized conser 20.1 19 0.00042 38.3 -1.8 78 129-207 4-81 (572)
No 1
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=99.91 E-value=1.9e-23 Score=221.69 Aligned_cols=337 Identities=30% Similarity=0.434 Sum_probs=194.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
++..+||||||...+....++.++..||.|.+|+.+. |||+.|..+..+..|+..|+-..++|..+.+++.
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4577899999999999999999999999999998753 9999999999999999999999999999998876
Q ss_pred hhhHHHHHhhhhhhhhccccccc---cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHH
Q 008117 206 QATREYLERYVDKKTENTKKLKE---TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKA 282 (577)
Q Consensus 206 ~~~~~~~~~~~~~k~~~~~~~~~---~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~ 282 (577)
..+-...+.+............+ ....+++|++............. + .+-++ ....
T Consensus 109 ~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~---------------i--s~s~~----s~~~ 167 (668)
T KOG2253|consen 109 EQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQ---------------I--SSSAA----SRRQ 167 (668)
T ss_pred hhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHh---------------c--cchhh----hhhh
Confidence 33211111111100000000000 11123333333332222211100 0 00000 1112
Q ss_pred HHHHHHHHhhhHHHHhhcCCCCCCCCCCCCCCCCCCCCccCcccCCCCCccccccccccccccccccccccccCcCCCCC
Q 008117 283 DQEALEKLTCMVEERLKTNPLPPPPPQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKASDHDRPE 362 (577)
Q Consensus 283 a~~Al~~l~~~i~e~~~~~~~~~p~~~~~~~~~~~~~~e~~~k~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 362 (577)
-..+...+..++......+++.++.+.+..+ ..+....+..+.+..+ .++.....+..
T Consensus 168 ~~e~d~h~~e~~~~~~~s~~~~~~~~~~~~~-----~~e~~~~s~~~~s~td--------------s~~~~d~~~~~--- 225 (668)
T KOG2253|consen 168 IAEADDHCLELEKTETESNSALSKEAESKKS-----PFEDTKDSKRSFSSTD--------------SGSESDSAEVN--- 225 (668)
T ss_pred hHHHHHHHHHHHHhhcccccccCcccccccC-----chhhhchhhhhhcccC--------------ccccchhhhhc---
Confidence 2233344444444444344433322222111 0000011111111111 00000000000
Q ss_pred CCCCCcccccc-ccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 008117 363 TSSPDRSRVHD-RRGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREKERQYE 441 (577)
Q Consensus 363 ~~~~~r~r~~~-rr~r~r~r~~~r~r~r~~~~~~r~rerer~r~~~~~~~~~~~~er~~~er~r~~e~rer~~e~~r~~~ 441 (577)
+.++. .+++.+.+.+.|...|.+.+.+.....+..++++.......+.|.+|+.|++.|+.|++.++++++++
T Consensus 226 ------s~~~n~~rd~sr~~~r~R~~~r~Re~~e~~ed~~~~re~r~~~~~~~~~E~Ayq~rl~~we~Rer~~~Ke~eke 299 (668)
T KOG2253|consen 226 ------SSSLNYCRDRSRFDRRSRNDRRIRERLEKNEDSDEYREDRAATIKSVDPEKAYQTRLVFWEIREQTKEKEREKE 299 (668)
T ss_pred ------ccccccchhhccchhhhHHHHHHHHHhhhccchHHHHHhhhhhhhccChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11111111111111111111111122345566677777888999999999999999999887777766
Q ss_pred HHHHHHHHH------HHhHHhhhhcccchhhhhhhhhhhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008117 442 KEKEKERER------KRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREKEEDLADEVREEEEIAVAKRRAEEEQLQQ 515 (577)
Q Consensus 442 ~er~~er~r------~r~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~re~e~~~~~r~re~~e~~~~~~~~~~~~~~~ 515 (577)
+++++++++ ++++++++|||+++++ -+||+++++..|.+++.++.|++.+||.++++|++++|++..++..+.
T Consensus 300 ~~ke~~r~~~~~ke~kr~k~~~ed~DD~rdd-~~y~r~s~l~~r~r~~~re~Ead~~dR~qeqee~~E~Kr~~~~~~~~~ 378 (668)
T KOG2253|consen 300 RLKEKSRQYKREKEAKRLKEFLEDYDDERDD-PKYYRGSALQERLRDREREAEADRRDRHQEQEELEEIKRRHSEEEAED 378 (668)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcchhhhh-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhcccc
Confidence 666665543 6788888899999977 599999999999999999999999999999999999999998877766
Q ss_pred HHHHHH
Q 008117 516 QQRDAL 521 (577)
Q Consensus 516 ~~~~~~ 521 (577)
......
T Consensus 379 ~~~e~~ 384 (668)
T KOG2253|consen 379 PSAEEE 384 (668)
T ss_pred cchHHH
Confidence 554443
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.91 E-value=6.3e-23 Score=213.47 Aligned_cols=156 Identities=15% Similarity=0.240 Sum_probs=130.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+++|+++|+.+|..||.|++|+|+.+..|++++|||||+|.+.++|..||..|||..|.++.|.|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccC-CCCCCCCCCCCceEEEEeCCHHHH
Q 008117 205 DQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDN-ETGNKESHDPTNFGVVTEEDRKAD 283 (577)
Q Consensus 205 a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~-~~~~~~~g~~kgfgfV~f~~~e~a 283 (577)
+..... ....++ +||+||+..+++++|++++..++.+... -..+..+|+++|||||+|.+.++|
T Consensus 184 a~p~~~--------------~~~~~~-lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A 248 (346)
T TIGR01659 184 ARPGGE--------------SIKDTN-LYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEA 248 (346)
T ss_pred cccccc--------------ccccce-eEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHH
Confidence 754211 111233 5999999999999999984422211111 112356899999999999999999
Q ss_pred HHHHHHHhhhHH
Q 008117 284 QEALEKLTCMVE 295 (577)
Q Consensus 284 ~~Al~~l~~~i~ 295 (577)
.+||..|++.+-
T Consensus 249 ~~Ai~~lng~~~ 260 (346)
T TIGR01659 249 QEAISALNNVIP 260 (346)
T ss_pred HHHHHHhCCCcc
Confidence 999999998753
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.85 E-value=3.4e-21 Score=210.61 Aligned_cols=164 Identities=16% Similarity=0.249 Sum_probs=128.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++||||||++.+++++|+.+|..||.|.+|.|+.++.+|+++|||||+|.+.++|..||..|||..|+|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred hhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHH
Q 008117 206 QATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQ 284 (577)
Q Consensus 206 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~ 284 (577)
....... .... ...........+||+||+..+++++|..++..++....... .+..+|+++|||||.|.+.++|.
T Consensus 185 ~~~p~a~-~~~~---~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 185 SNMPQAQ-PIID---MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred ccccccc-cccc---cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 3321100 0000 00001111223599999999999999988552221111111 12467899999999999999999
Q ss_pred HHHHHHhhh
Q 008117 285 EALEKLTCM 293 (577)
Q Consensus 285 ~Al~~l~~~ 293 (577)
+||..||++
T Consensus 261 kAI~amNg~ 269 (612)
T TIGR01645 261 EAIASMNLF 269 (612)
T ss_pred HHHHHhCCC
Confidence 999999976
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.85 E-value=9.2e-21 Score=199.72 Aligned_cols=153 Identities=14% Similarity=0.228 Sum_probs=127.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
+.++|||+|||+.+|+++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008117 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQE 285 (577)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~-~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~ 285 (577)
.... ..... .+||+||+..+++.+|..++...+ +....-..+..+|.++|||||+|.+.++|..
T Consensus 82 ~~~~--------------~~~~~-~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ 146 (352)
T TIGR01661 82 PSSD--------------SIKGA-NLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADR 146 (352)
T ss_pred cccc--------------ccccc-eEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHH
Confidence 4311 01112 359999999999999988844221 1110111224567899999999999999999
Q ss_pred HHHHHhhhH
Q 008117 286 ALEKLTCMV 294 (577)
Q Consensus 286 Al~~l~~~i 294 (577)
|+..|++..
T Consensus 147 ai~~l~g~~ 155 (352)
T TIGR01661 147 AIKTLNGTT 155 (352)
T ss_pred HHHHhCCCc
Confidence 999999864
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.81 E-value=1.1e-19 Score=203.45 Aligned_cols=152 Identities=18% Similarity=0.288 Sum_probs=125.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhhH
Q 008117 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQATR 209 (577)
Q Consensus 130 tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~~~ 209 (577)
+|||||||+++|+++|..+|+.||.|.+|+|+.+..|++++|||||+|.+.++|.+||..||+..|.|+.|.|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999875321
Q ss_pred HHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHH
Q 008117 210 EYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEK 289 (577)
Q Consensus 210 ~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~ 289 (577)
. ......++ +||+||+..+++.+|.+++..++.........+.+|+++|||||.|.+.++|..|+.+
T Consensus 82 ~------------~~~~~~~~-vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~ 148 (562)
T TIGR01628 82 S------------LRRSGVGN-IFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQK 148 (562)
T ss_pred c------------ccccCCCc-eEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHH
Confidence 0 01111233 5999999999999999884422211111112246788999999999999999999999
Q ss_pred HhhhH
Q 008117 290 LTCMV 294 (577)
Q Consensus 290 l~~~i 294 (577)
++++.
T Consensus 149 lng~~ 153 (562)
T TIGR01628 149 VNGML 153 (562)
T ss_pred hcccE
Confidence 98763
No 6
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1.6e-19 Score=183.50 Aligned_cols=148 Identities=22% Similarity=0.276 Sum_probs=123.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CeEEE
Q 008117 123 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELM 201 (577)
Q Consensus 123 ~~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~-gr~i~ 201 (577)
+.....+-||||.||.++.+++|.-||.+.|.|-.++|+.++.+|.++|||||+|.+.+.|+.||..||+++|. |+.|.
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 33456899999999999999999999999999999999999999999999999999999999999999999995 99999
Q ss_pred EEEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCC-CCC-Cccc-ccCCCCCCCCCCCCceEEEEeC
Q 008117 202 LKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEP-TKS-PENL-KDNETGNKESHDPTNFGVVTEE 278 (577)
Q Consensus 202 V~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~-~ks-~~~~-k~~~~~~~~~g~~kgfgfV~f~ 278 (577)
|.++... +.+||+|||...++++|.+- .+. -++. -..-.+..+..+++||+||+|.
T Consensus 158 vc~Svan---------------------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe 216 (506)
T KOG0117|consen 158 VCVSVAN---------------------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYE 216 (506)
T ss_pred EEEeeec---------------------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEee
Confidence 9876552 33699999999998887655 431 1111 0111233557899999999999
Q ss_pred CHHHHHHHHHHHh
Q 008117 279 DRKADQEALEKLT 291 (577)
Q Consensus 279 ~~e~a~~Al~~l~ 291 (577)
++..|..|..+|.
T Consensus 217 ~H~~Aa~aRrKl~ 229 (506)
T KOG0117|consen 217 SHRAAAMARRKLM 229 (506)
T ss_pred cchhHHHHHhhcc
Confidence 9999999988874
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1e-19 Score=174.34 Aligned_cols=160 Identities=14% Similarity=0.207 Sum_probs=128.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.....||||.|...++.+.|++.|.+||.|..++|++|..|+++||||||.|.+..+|+.||..|||.-|++|.|+.+|+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhHHHHHhhhhhhhh---cccccccccc-ccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHH
Q 008117 206 QATREYLERYVDKKTE---NTKKLKETQD-AGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRK 281 (577)
Q Consensus 206 ~~~~~~~~~~~~~k~~---~~~~~~~~~~-~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e 281 (577)
.-+. .....+... .-...+.+|+ +||+||...+++++++.++...+.+.++ ...+-+||+||.|++++
T Consensus 140 TRKp---~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EV-----RvFk~qGYaFVrF~tkE 211 (321)
T KOG0148|consen 140 TRKP---SEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEV-----RVFKDQGYAFVRFETKE 211 (321)
T ss_pred ccCc---cccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEE-----EEecccceEEEEecchh
Confidence 6543 111111111 1112334444 7999999999999999885533322211 12345899999999999
Q ss_pred HHHHHHHHHhhh
Q 008117 282 ADQEALEKLTCM 293 (577)
Q Consensus 282 ~a~~Al~~l~~~ 293 (577)
+|..||..+|+.
T Consensus 212 aAahAIv~mNnt 223 (321)
T KOG0148|consen 212 AAAHAIVQMNNT 223 (321)
T ss_pred hHHHHHHHhcCc
Confidence 999999999875
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.80 E-value=3.4e-19 Score=194.47 Aligned_cols=166 Identities=19% Similarity=0.275 Sum_probs=129.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008117 124 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (577)
Q Consensus 124 ~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~ 203 (577)
.....++|||+|||+.+++.+|..+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||. |+|..|.|+.|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999997 89999999999998
Q ss_pred EchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCC-CCCCCCCCCCceEEEEeCCHHH
Q 008117 204 VDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNE-TGNKESHDPTNFGVVTEEDRKA 282 (577)
Q Consensus 204 ~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~-~~~~~~g~~kgfgfV~f~~~e~ 282 (577)
++.............. .........+||+||+..+++.+|.+++..++.+.... ..+..+|+++|||||+|.+.++
T Consensus 164 ~~~~~~~~~~~~~~~~---~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQ---PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred ecchhhhhhhhccccc---CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 8755332221111000 00011134469999999999999998854222111111 1225668999999999999999
Q ss_pred HHHHHHHHhhh
Q 008117 283 DQEALEKLTCM 293 (577)
Q Consensus 283 a~~Al~~l~~~ 293 (577)
|..|+..|+++
T Consensus 241 A~~A~~~l~g~ 251 (457)
T TIGR01622 241 AKEALEVMNGF 251 (457)
T ss_pred HHHHHHhcCCc
Confidence 99999999984
No 9
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=9.1e-19 Score=177.25 Aligned_cols=161 Identities=16% Similarity=0.179 Sum_probs=133.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-eC--CeE
Q 008117 123 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-ID--GQE 199 (577)
Q Consensus 123 ~~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~-i~--gr~ 199 (577)
.++.....||||.||..+++.+|+.+|.+||.|.+|.|++|+.||.++|||||.|.+..+|..|+.+||... |- ...
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 345677899999999999999999999999999999999999999999999999999999999999998764 43 357
Q ss_pred EEEEEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCC
Q 008117 200 LMLKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEED 279 (577)
Q Consensus 200 i~V~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~ 279 (577)
|.|++++..+..+ ....+ +||+-|+...++.++++++..++.+++.....+..+.++|||||.|.+
T Consensus 109 vqvk~Ad~E~er~-------------~~e~K-LFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fst 174 (510)
T KOG0144|consen 109 VQVKYADGERERI-------------VEERK-LFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFST 174 (510)
T ss_pred eeecccchhhhcc-------------ccchh-hhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEeh
Confidence 8888887753332 11122 499999999999999999554444444444447889999999999999
Q ss_pred HHHHHHHHHHHhhhHHHH
Q 008117 280 RKADQEALEKLTCMVEER 297 (577)
Q Consensus 280 ~e~a~~Al~~l~~~i~e~ 297 (577)
++.|..||+.||+.....
T Consensus 175 ke~A~~Aika~ng~~tme 192 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTME 192 (510)
T ss_pred HHHHHHHHHhhccceeec
Confidence 999999999999875543
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.78 E-value=1.8e-18 Score=189.23 Aligned_cols=143 Identities=21% Similarity=0.264 Sum_probs=117.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEEc
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLKVD 205 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~-gr~i~V~~a 205 (577)
..++|||+|||+++++++|..+|+.||.|..|+|+.+ .+|.++|||||+|.+.++|..||..||+..|. |+.|.|.++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4689999999999999999999999999999999999 79999999999999999999999999999985 787777543
Q ss_pred hhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCC-CCC-Ccccc-cCCCCCCCCCCCCceEEEEeCCHHH
Q 008117 206 QATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEP-TKS-PENLK-DNETGNKESHDPTNFGVVTEEDRKA 282 (577)
Q Consensus 206 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~-~ks-~~~~k-~~~~~~~~~g~~kgfgfV~f~~~e~ 282 (577)
.. ...+||+||+..+++++|.+. .+. ..+.. .........++++|||||+|.++++
T Consensus 136 ~~---------------------~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~ed 194 (578)
T TIGR01648 136 VD---------------------NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRA 194 (578)
T ss_pred cc---------------------CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHH
Confidence 21 123599999999999988776 331 11111 1111223457889999999999999
Q ss_pred HHHHHHHHh
Q 008117 283 DQEALEKLT 291 (577)
Q Consensus 283 a~~Al~~l~ 291 (577)
|..|+.+|+
T Consensus 195 Aa~AirkL~ 203 (578)
T TIGR01648 195 AAMARRKLM 203 (578)
T ss_pred HHHHHHHhh
Confidence 999998875
No 11
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=2.2e-18 Score=163.96 Aligned_cols=154 Identities=14% Similarity=0.224 Sum_probs=130.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
+...++|.|--||.++|.++|+.||...|.|.+|++++|+.+|.+.|||||.|.++.+|.+||..|||..|..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHH
Q 008117 205 DQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKAD 283 (577)
Q Consensus 205 a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~k-s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a 283 (577)
+......+ +..| +||..||.+++..+++.++. ...+...--.++..+|.++|.|||.|+.+.+|
T Consensus 118 ARPSs~~I--------------k~aN-LYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EA 182 (360)
T KOG0145|consen 118 ARPSSDSI--------------KDAN-LYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEA 182 (360)
T ss_pred ccCChhhh--------------cccc-eEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHH
Confidence 98753322 2234 49999999999999998844 11111111113377899999999999999999
Q ss_pred HHHHHHHhhh
Q 008117 284 QEALEKLTCM 293 (577)
Q Consensus 284 ~~Al~~l~~~ 293 (577)
+.||..||+-
T Consensus 183 e~AIk~lNG~ 192 (360)
T KOG0145|consen 183 EEAIKGLNGQ 192 (360)
T ss_pred HHHHHhccCC
Confidence 9999998875
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.76 E-value=2.8e-18 Score=180.81 Aligned_cols=167 Identities=13% Similarity=0.141 Sum_probs=124.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 204 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~g--r~i~V~~ 204 (577)
..++|||+|||..+++++|..+|..||.|..+.++.+..+|.++|||||+|.+.++|..||..|||..+.| ..|.|.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35689999999999999999999999999999999988889999999999999999999999999999987 6788888
Q ss_pred chhhHH-----HHH---hhhhh--hh-------------------------------------------------hc---
Q 008117 205 DQATRE-----YLE---RYVDK--KT-------------------------------------------------EN--- 222 (577)
Q Consensus 205 a~~~~~-----~~~---~~~~~--k~-------------------------------------------------~~--- 222 (577)
+..... ... .+... .. ..
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 743220 000 00000 00 00
Q ss_pred ----------cc-----cccccccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHH
Q 008117 223 ----------TK-----KLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEA 286 (577)
Q Consensus 223 ----------~~-----~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~A 286 (577)
.. .......+||+||+..+++++|.+++..++.+..... .+..+|.++|||||.|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 00 0011113699999999999999998442221111111 1255899999999999999999999
Q ss_pred HHHHhhh
Q 008117 287 LEKLTCM 293 (577)
Q Consensus 287 l~~l~~~ 293 (577)
|..|++.
T Consensus 328 i~~lnG~ 334 (352)
T TIGR01661 328 ILSLNGY 334 (352)
T ss_pred HHHhCCC
Confidence 9999875
No 13
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.75 E-value=3.5e-18 Score=155.25 Aligned_cols=156 Identities=15% Similarity=0.271 Sum_probs=126.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
....|||||||+..+++..|.++|-.+|+|+.++|..++.+..++|||||+|.+.++|.-||..||...|.|++|+|+.+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred hhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCC-CCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHH
Q 008117 206 QATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEP-TKSPENLKDNET-GNKESHDPTNFGVVTEEDRKAD 283 (577)
Q Consensus 206 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~-~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a 283 (577)
..... ......+ .||+||...+++..+-.+ +....+...... -...+|.++|||||.|.+.+.+
T Consensus 87 s~~~~-------------nl~vgan-lfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeas 152 (203)
T KOG0131|consen 87 SAHQK-------------NLDVGAN-LFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEAS 152 (203)
T ss_pred ccccc-------------ccccccc-ccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHH
Confidence 42110 0111133 499999999988887666 332222221111 1256799999999999999999
Q ss_pred HHHHHHHhhhHH
Q 008117 284 QEALEKLTCMVE 295 (577)
Q Consensus 284 ~~Al~~l~~~i~ 295 (577)
..|+..+|+-+.
T Consensus 153 d~ai~s~ngq~l 164 (203)
T KOG0131|consen 153 DAAIGSMNGQYL 164 (203)
T ss_pred HHHHHHhccchh
Confidence 999999887654
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.75 E-value=7.1e-18 Score=188.75 Aligned_cols=166 Identities=19% Similarity=0.254 Sum_probs=129.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC----CeEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELM 201 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~----gr~i~ 201 (577)
...++|||+||+.++|+++|+.+|+.||.|.++.|+.+ .+|.++|||||.|.+.++|..|+..|||..|. |..|.
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 44678999999999999999999999999999999988 47999999999999999999999999999999 99999
Q ss_pred EEEchhhHHHHHhhhh----hhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEe
Q 008117 202 LKVDQATREYLERYVD----KKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTE 277 (577)
Q Consensus 202 V~~a~~~~~~~~~~~~----~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f 277 (577)
|.++............ ............+ +||+||+..+++++|++++..++.+.......+.+|.++|||||.|
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~-l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f 333 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQERKMKAQGVN-LYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCF 333 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhhhcccCCCE-EEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEe
Confidence 9887654332111111 1111111222333 5999999999999999985422222211122246799999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 008117 278 EDRKADQEALEKLTCM 293 (577)
Q Consensus 278 ~~~e~a~~Al~~l~~~ 293 (577)
.+.++|.+|+..|++.
T Consensus 334 ~~~~~A~~A~~~~~g~ 349 (562)
T TIGR01628 334 SNPEEANRAVTEMHGR 349 (562)
T ss_pred CCHHHHHHHHHHhcCC
Confidence 9999999999998864
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.74 E-value=1.3e-17 Score=184.44 Aligned_cols=165 Identities=18% Similarity=0.161 Sum_probs=114.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhc------------CceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 008117 123 PAEKPQTKVYVGKIAPTADSDFVLSVLKVC------------GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190 (577)
Q Consensus 123 ~~~~~~~tlfVgnLp~~~te~~L~~~F~~~------------G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~L 190 (577)
......++|||||||+.+|+++|..||..| +.|..+.+ +..+|||||+|.+.++|..||. |
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-C
Confidence 345667999999999999999999999975 23333333 4557999999999999999995 9
Q ss_pred CCceeCCeEEEEEEchhhHHHHH----hhhhhhhhc----------cccccccccccccCCCcccchhhhcCCCCCCccc
Q 008117 191 NKFNIDGQELMLKVDQATREYLE----RYVDKKTEN----------TKKLKETQDAGAGKEDESVQSVEKNEPTKSPENL 256 (577)
Q Consensus 191 ng~~i~gr~i~V~~a~~~~~~~~----~~~~~k~~~----------~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~ 256 (577)
||+.|.|+.|.|........... ......... .......+.+||+||+..+++++|.+++..++..
T Consensus 243 ~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred CCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 99999999999964322110000 000000000 0011122346999999999999998885522211
Q ss_pred ccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhhH
Q 008117 257 KDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (577)
Q Consensus 257 k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~i 294 (577)
..... .+..+|.++|||||+|.+.++|..||..|+++.
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~ 361 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKD 361 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 11111 124679999999999999999999999998763
No 16
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.73 E-value=1.2e-15 Score=158.63 Aligned_cols=83 Identities=11% Similarity=0.249 Sum_probs=77.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||++|+..+...+|+.||++||+|+..+||++..+...+|||||++.+..+|.+||..||.+.|+|+.|.|.-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 543
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.72 E-value=1.1e-16 Score=175.47 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=120.3
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008117 125 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (577)
Q Consensus 125 ~~~~~tlfVgnLp~-~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~ 203 (577)
..+.++|||+||++ .+|+++|..+|+.||.|..|+|+.++ +|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999998863 5899999999999999999999999999999999
Q ss_pred EchhhHHHHHh-------------hhhhhh-----hccc----cccccccccccCCCcccchhhhcCCCCCCcc--cccC
Q 008117 204 VDQATREYLER-------------YVDKKT-----ENTK----KLKETQDAGAGKEDESVQSVEKNEPTKSPEN--LKDN 259 (577)
Q Consensus 204 ~a~~~~~~~~~-------------~~~~k~-----~~~~----~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~--~k~~ 259 (577)
++......... +..... .... .......+||+||+..+++++|++++...+. ....
T Consensus 347 ~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~i 426 (481)
T TIGR01649 347 PSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKF 426 (481)
T ss_pred EcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEE
Confidence 87553211110 000000 0000 0123445799999999999999998542221 1111
Q ss_pred CCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 260 ETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 260 ~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
......++ .+|||||+|.+.++|..||..|++.
T Consensus 427 k~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~ 459 (481)
T TIGR01649 427 KFFPKDNE-RSKMGLLEWESVEDAVEALIALNHH 459 (481)
T ss_pred EEecCCCC-cceeEEEEcCCHHHHHHHHHHhcCC
Confidence 11112222 5789999999999999999999875
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.71 E-value=9.9e-17 Score=177.48 Aligned_cols=166 Identities=15% Similarity=0.190 Sum_probs=118.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|..+|..||.|..|.|+.+..+|.++|||||+|.+..+|..||..|||..|+|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred hhhHHHHH--hh---------hhhhhh-c-cccccccccccccCCCccc---c-------hhhhcCCC-C-----CCccc
Q 008117 206 QATREYLE--RY---------VDKKTE-N-TKKLKETQDAGAGKEDESV---Q-------SVEKNEPT-K-----SPENL 256 (577)
Q Consensus 206 ~~~~~~~~--~~---------~~~k~~-~-~~~~~~~~~~~v~nl~~~~---~-------~~~l~e~~-k-----s~~~~ 256 (577)
........ .. ...... . ......+.++++.|+.... + .++|.+++ + ++.+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 53211100 00 000000 0 0012245556777764321 1 12333332 2 22222
Q ss_pred ccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 257 KDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 257 k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+.. .+..++...||+||.|.+.++|.+|+..||+.
T Consensus 453 ~~~--~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 453 RPN--GDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred ccC--cCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 211 12345677899999999999999999999975
No 19
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=3.7e-17 Score=162.02 Aligned_cols=155 Identities=17% Similarity=0.268 Sum_probs=126.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
..|.||||.|.+.+.++.|+..|..||+|+++.+..|+.|++++||+||+|.-++.|..|++.|||..++|+.|+|..-.
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999997433
Q ss_pred hh---HHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEe
Q 008117 207 AT---REYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTE 277 (577)
Q Consensus 207 ~~---~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~k------s~~~~k~~~~~~~~~g~~kgfgfV~f 277 (577)
.. +..++...+. ..++.. .||..++..+++.++.-.+. ++.+.+. ...+.+|||||++|
T Consensus 192 NmpQAQpiID~vqee------Ak~fnR-iYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~-----pt~~~HkGyGfiEy 259 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEE------AKKFNR-IYVASVHPDLSETDIKSVFEAFGEIVKCQLARA-----PTGRGHKGYGFIEY 259 (544)
T ss_pred CCcccchHHHHHHHH------HHhhhe-EEeeecCCCccHHHHHHHHHhhcceeeEEeecc-----CCCCCccceeeEEe
Confidence 21 2233333221 123344 49999999999998765422 4445542 55678999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 008117 278 EDRKADQEALEKLTCM 293 (577)
Q Consensus 278 ~~~e~a~~Al~~l~~~ 293 (577)
.+..+-..|+..||-+
T Consensus 260 ~n~qs~~eAiasMNlF 275 (544)
T KOG0124|consen 260 NNLQSQSEAIASMNLF 275 (544)
T ss_pred ccccchHHHhhhcchh
Confidence 9999999999888754
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=3.3e-16 Score=162.75 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=128.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~ 207 (577)
+.||||++||+.++.++|..+|+.+|+|..|.+++++.++.++|||||+|+-.+++.+||..+++..|+|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred hHHHHH--hh----hhhhhhc-----cccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEE
Q 008117 208 TREYLE--RY----VDKKTEN-----TKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVT 276 (577)
Q Consensus 208 ~~~~~~--~~----~~~k~~~-----~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~ 276 (577)
....-. .. ..+..+. .+.....--+.|.|||..+...+|..++..++...+.....+..|+.-|||||.
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~ 164 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQ 164 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEE
Confidence 432210 00 0000000 111111222589999999999999887442332222222336678888999999
Q ss_pred eCCHHHHHHHHHHHhhh
Q 008117 277 EEDRKADQEALEKLTCM 293 (577)
Q Consensus 277 f~~~e~a~~Al~~l~~~ 293 (577)
|....+|..||+.+|+.
T Consensus 165 fk~~~dA~~Al~~~N~~ 181 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGN 181 (678)
T ss_pred EeeHHHHHHHHHhccCc
Confidence 99999999999999875
No 21
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.63 E-value=1.9e-15 Score=138.36 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|+.+|..||.|..|.|+.++.|++++|||||+|.+.++|..||..||+..|+|+.|+|.|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 54
No 22
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.63 E-value=1.3e-15 Score=166.90 Aligned_cols=156 Identities=13% Similarity=0.020 Sum_probs=114.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCceeCCeEEEEEE
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELMLKV 204 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~L--ng~~i~gr~i~V~~ 204 (577)
++++|||+|||+.+++++|..+|+.||.|.+|.|+.+ ++||||+|.+.++|..||..| ++..|+|+.|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4689999999999999999999999999999999854 489999999999999999864 78999999999999
Q ss_pred chhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHH
Q 008117 205 DQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQ 284 (577)
Q Consensus 205 a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~ 284 (577)
+......... . .............+||+||+..+++++|.+++..++.+...... .. ..+++|||+|.+.++|.
T Consensus 75 s~~~~~~~~~--~-~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~-~~--~~~~~afVef~~~~~A~ 148 (481)
T TIGR01649 75 STSQEIKRDG--N-SDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTF-TK--NNVFQALVEFESVNSAQ 148 (481)
T ss_pred cCCcccccCC--C-CcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEE-ec--CCceEEEEEECCHHHHH
Confidence 8653210000 0 00000001111125999999999999999884422211100000 11 12479999999999999
Q ss_pred HHHHHHhhhH
Q 008117 285 EALEKLTCMV 294 (577)
Q Consensus 285 ~Al~~l~~~i 294 (577)
+|+..||+..
T Consensus 149 ~A~~~Lng~~ 158 (481)
T TIGR01649 149 HAKAALNGAD 158 (481)
T ss_pred HHHHHhcCCc
Confidence 9999999864
No 23
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.3e-15 Score=159.61 Aligned_cols=134 Identities=20% Similarity=0.300 Sum_probs=117.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhh
Q 008117 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (577)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~~ 208 (577)
..|||| +++|+..|..+|+.+|+|++++|+.+. | +.|||||.|.++.+|.+||..||...|.|+.|+|.|++..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 899999999999999999999999996 5 9999999999999999999999999999999999988653
Q ss_pred HHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHH
Q 008117 209 REYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKA 282 (577)
Q Consensus 209 ~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~k------s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~ 282 (577)
..+ +||+||+..++...|..++. |+.+.. +.+| ++|| ||.|++.++
T Consensus 76 ~~~--------------------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~------~~~g-~kg~-FV~f~~e~~ 127 (369)
T KOG0123|consen 76 PSL--------------------VFIKNLDESIDNKSLYDTFSEFGNILSCKVAT------DENG-SKGY-FVQFESEES 127 (369)
T ss_pred Cce--------------------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEE------cCCC-ceee-EEEeCCHHH
Confidence 222 59999999999999887733 666655 4445 9999 999999999
Q ss_pred HHHHHHHHhhhHHH
Q 008117 283 DQEALEKLTCMVEE 296 (577)
Q Consensus 283 a~~Al~~l~~~i~e 296 (577)
|.+|+..+|+++..
T Consensus 128 a~~ai~~~ng~ll~ 141 (369)
T KOG0123|consen 128 AKKAIEKLNGMLLN 141 (369)
T ss_pred HHHHHHHhcCcccC
Confidence 99999999998664
No 24
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.60 E-value=1.9e-15 Score=146.45 Aligned_cols=133 Identities=16% Similarity=0.260 Sum_probs=110.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhh
Q 008117 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (577)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~~ 208 (577)
..|||||||..+++.+|+.||.+||+|..|.|+.+ ||||..++...|..||..|||+.|+|..|.|.-+++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999987 9999999999999999999999999999999755442
Q ss_pred HHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHH
Q 008117 209 REYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALE 288 (577)
Q Consensus 209 ~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~ 288 (577)
.+..++ ++|+||....+..+++.++...+-.- +....++|+||.|+-.++|..|+.
T Consensus 75 ----------------sk~stk-l~vgNis~tctn~ElRa~fe~ygpvi-------ecdivkdy~fvh~d~~eda~~air 130 (346)
T KOG0109|consen 75 ----------------SKASTK-LHVGNISPTCTNQELRAKFEKYGPVI-------ECDIVKDYAFVHFDRAEDAVEAIR 130 (346)
T ss_pred ----------------CCCccc-cccCCCCccccCHHHhhhhcccCCce-------eeeeecceeEEEEeeccchHHHHh
Confidence 222334 49999999999999998844222111 112346799999999999999998
Q ss_pred HHhhh
Q 008117 289 KLTCM 293 (577)
Q Consensus 289 ~l~~~ 293 (577)
.|++.
T Consensus 131 ~l~~~ 135 (346)
T KOG0109|consen 131 GLDNT 135 (346)
T ss_pred ccccc
Confidence 88765
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.60 E-value=6.8e-15 Score=160.66 Aligned_cols=79 Identities=27% Similarity=0.496 Sum_probs=76.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
.++|||+|||+.+|+++|..+|..||.|..|.|+.+..+|.++|||||+|.+.++|..||..|||..|.|+.|.|.|+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 6899999999999999999999999999999999999899999999999999999999999999999999999999964
No 26
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=5.9e-15 Score=153.58 Aligned_cols=162 Identities=17% Similarity=0.205 Sum_probs=124.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+-..|.|.|||+.|...+|+.+|+.||.|..|.|+... .|+.+|||||.|....+|..||..|||..|+|++|-|.||
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 346789999999999999999999999999999999775 5666699999999999999999999999999999999998
Q ss_pred hhhHHHHHhh-------hh-----h------------------------------------------------------h
Q 008117 206 QATREYLERY-------VD-----K------------------------------------------------------K 219 (577)
Q Consensus 206 ~~~~~~~~~~-------~~-----~------------------------------------------------------k 219 (577)
.....|-+.. .. . .
T Consensus 194 V~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~ 273 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGK 273 (678)
T ss_pred cccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccccc
Confidence 7655543311 00 0 0
Q ss_pred hhccc---------cccccccccccCCCcccchhhhcCC-CC--CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHH
Q 008117 220 TENTK---------KLKETQDAGAGKEDESVQSVEKNEP-TK--SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEAL 287 (577)
Q Consensus 220 ~~~~~---------~~~~~~~~~v~nl~~~~~~~~l~e~-~k--s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al 287 (577)
....+ ...+..++||.||++.+++++|.+. ++ .+.+...+ ..+.+|.++|.|||.|.+..++..+|
T Consensus 274 ~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV--~~k~T~~skGtAFv~Fkt~~~~~~ci 351 (678)
T KOG0127|consen 274 KESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV--KDKDTGHSKGTAFVKFKTQIAAQNCI 351 (678)
T ss_pred CcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE--eccCCCCcccceEEEeccHHHHHHHH
Confidence 00000 0111234699999999999998877 33 33322222 23789999999999999999999987
Q ss_pred HHH
Q 008117 288 EKL 290 (577)
Q Consensus 288 ~~l 290 (577)
...
T Consensus 352 ~~A 354 (678)
T KOG0127|consen 352 EAA 354 (678)
T ss_pred Hhc
Confidence 743
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.57 E-value=6.4e-15 Score=161.44 Aligned_cols=150 Identities=15% Similarity=0.170 Sum_probs=113.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCc-eEEEEEee-cCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEE
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQ-YPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELML 202 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~-v~~~~i~~-~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng--~~i~gr~i~V 202 (577)
..++|||+|||.++++++|.++|..|+. |+.+.++. ....++++|||||+|.+..+|..|+..|+. ..|.|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4689999999999999999999999873 44444332 234678899999999999999999988763 4688999999
Q ss_pred EEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCC--cccccCCCCCCCCCCCCceEEEEeCCH
Q 008117 203 KVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSP--ENLKDNETGNKESHDPTNFGVVTEEDR 280 (577)
Q Consensus 203 ~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~--~~~k~~~~~~~~~g~~kgfgfV~f~~~ 280 (577)
.|+......- .......+++||+||+..+++++|.+++..+ +.+.. ....++||||+|.+.
T Consensus 217 dwA~p~~~~d----------~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~r-------V~~~rgfAFVeF~s~ 279 (578)
T TIGR01648 217 DWAEPEEEVD----------EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVER-------VKKIRDYAFVHFEDR 279 (578)
T ss_pred Eeeccccccc----------ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEE-------EEeecCeEEEEeCCH
Confidence 9986542110 0111123446999999999999999885533 32211 123478999999999
Q ss_pred HHHHHHHHHHhhh
Q 008117 281 KADQEALEKLTCM 293 (577)
Q Consensus 281 e~a~~Al~~l~~~ 293 (577)
++|.+|+..||+.
T Consensus 280 e~A~kAi~~lnG~ 292 (578)
T TIGR01648 280 EDAVKAMDELNGK 292 (578)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999874
No 28
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=6.8e-15 Score=140.82 Aligned_cols=87 Identities=16% Similarity=0.280 Sum_probs=80.3
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 008117 119 PTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 198 (577)
Q Consensus 119 ~~~~~~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr 198 (577)
+...-..+.+|+|||-.||...++.+|..+|-.||.|++.+|..|+.|+.+||||||.|.++.+|..||.+|||+.|+-+
T Consensus 276 ~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMK 355 (371)
T KOG0146|consen 276 PQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK 355 (371)
T ss_pred hhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhh
Confidence 33344467799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEc
Q 008117 199 ELMLKVD 205 (577)
Q Consensus 199 ~i~V~~a 205 (577)
+|+|.+.
T Consensus 356 RLKVQLK 362 (371)
T KOG0146|consen 356 RLKVQLK 362 (371)
T ss_pred hhhhhhc
Confidence 9998654
No 29
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.5e-14 Score=151.71 Aligned_cols=150 Identities=21% Similarity=0.289 Sum_probs=123.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhhHH
Q 008117 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQATRE 210 (577)
Q Consensus 131 lfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~~~~ 210 (577)
|||.||++.++...|..+|+.||.|++|++.++. .| ++|| ||.|.+.++|.+||..|||..+.|+.|.|........
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999984 55 9999 9999999999999999999999999999987655432
Q ss_pred HHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHH
Q 008117 211 YLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQ 284 (577)
Q Consensus 211 ~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~k------s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~ 284 (577)
...... . .....+++ +++|+....++..+..+.. +..++. +..|+++|||||.|++++.|.
T Consensus 156 r~~~~~-----~-~~~~~t~v-~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~------~~~g~~~~~gfv~f~~~e~a~ 222 (369)
T KOG0123|consen 156 REAPLG-----E-YKKRFTNV-YVKNLEEDSTDEELKDLFSAYGSITSVAVMR------DSIGKSKGFGFVNFENPEDAK 222 (369)
T ss_pred hccccc-----c-hhhhhhhh-heeccccccchHHHHHhhcccCcceEEEEee------cCCCCCCCccceeecChhHHH
Confidence 221111 1 22334554 9999998888888888844 333443 677889999999999999999
Q ss_pred HHHHHHhhhHHH
Q 008117 285 EALEKLTCMVEE 296 (577)
Q Consensus 285 ~Al~~l~~~i~e 296 (577)
.|+..|++.+-.
T Consensus 223 ~av~~l~~~~~~ 234 (369)
T KOG0123|consen 223 KAVETLNGKIFG 234 (369)
T ss_pred HHHHhccCCcCC
Confidence 999999887653
No 30
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1e-14 Score=148.86 Aligned_cols=150 Identities=17% Similarity=0.208 Sum_probs=117.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC-ceEEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYP-SNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELM 201 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G-~v~~~~i~~~~-~tg~~kg~gFV~f~~~~~A~~Al~~Ln--g~~i~gr~i~ 201 (577)
...+.|||||||.+.+.++|.+.|.+.+ .|+.|.|...+ ...+.+|||||+|.++..|..|-+.|- .+.|.|..|.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 3578999999999999999999999998 57777766554 467889999999999999999987763 3567899999
Q ss_pred EEEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCH
Q 008117 202 LKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDR 280 (577)
Q Consensus 202 V~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~-~~k~~~~~~~~~g~~kgfgfV~f~~~ 280 (577)
|.||.....--.. .....+++||.||..++|++.|++++..++ +.+. -+.+.||||.|.++
T Consensus 242 VdWAep~~e~ded----------~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRV--------kk~rDYaFVHf~eR 303 (506)
T KOG0117|consen 242 VDWAEPEEEPDED----------TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERV--------KKPRDYAFVHFAER 303 (506)
T ss_pred eeccCcccCCChh----------hhhheeeeeeeccchhhhHHHHHHHHHhccceEEe--------ecccceeEEeecch
Confidence 9999875222111 122234579999999999999998855222 2221 13466999999999
Q ss_pred HHHHHHHHHHhhh
Q 008117 281 KADQEALEKLTCM 293 (577)
Q Consensus 281 e~a~~Al~~l~~~ 293 (577)
++|.+|+..+|+.
T Consensus 304 ~davkAm~~~ngk 316 (506)
T KOG0117|consen 304 EDAVKAMKETNGK 316 (506)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999999876
No 31
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=2.7e-14 Score=153.38 Aligned_cols=157 Identities=22% Similarity=0.236 Sum_probs=120.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN---GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~t---g~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
++|||.||++.+|...|..+|..+|.|.++.|...+.. -.+.|||||+|.+.++|..|+..|+|+.|+|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 44999999999999999999999999999988765422 235599999999999999999999999999999999999
Q ss_pred hhhHH-HHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCC-CCCCCCceEEEEeCCHHHH
Q 008117 206 QATRE-YLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNK-ESHDPTNFGVVTEEDRKAD 283 (577)
Q Consensus 206 ~~~~~-~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~-~~g~~kgfgfV~f~~~e~a 283 (577)
..... .+. +........++| .|.||+..++..+++.|+.+.+-.+.+....+ ..+-++|||||+|-++..|
T Consensus 596 ~~k~~~~~g------K~~~~kk~~tKI-lVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea 668 (725)
T KOG0110|consen 596 ENKPASTVG------KKKSKKKKGTKI-LVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREA 668 (725)
T ss_pred cCccccccc------ccccccccccee-eeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHH
Confidence 82111 111 111122234565 99999999999999999553322222222112 4466899999999999999
Q ss_pred HHHHHHHhh
Q 008117 284 QEALEKLTC 292 (577)
Q Consensus 284 ~~Al~~l~~ 292 (577)
..|+..|.+
T Consensus 669 ~nA~~al~S 677 (725)
T KOG0110|consen 669 KNAFDALGS 677 (725)
T ss_pred HHHHHhhcc
Confidence 999988863
No 32
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.51 E-value=8.6e-14 Score=110.63 Aligned_cols=70 Identities=33% Similarity=0.571 Sum_probs=67.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008117 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (577)
Q Consensus 131 lfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~ 201 (577)
|||+|||.++|+.+|+.+|+.||.|..+.+..+ .++.+++||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6899999999999999999999999999999999985
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.50 E-value=2.4e-14 Score=150.05 Aligned_cols=168 Identities=15% Similarity=0.197 Sum_probs=133.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008117 124 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (577)
Q Consensus 124 ~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~ 203 (577)
.....+|||+..|+..++.-+|..||+.+|+|..|.++.+..++.++|.|||+|.+.+++..||. |.|..+.|.+|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEec
Confidence 35568999999999999999999999999999999999999999999999999999999999996 89999999999999
Q ss_pred EchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCC-CCCCCCCCCCceEEEEeCCHHH
Q 008117 204 VDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNE-TGNKESHDPTNFGVVTEEDRKA 282 (577)
Q Consensus 204 ~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~-~~~~~~g~~kgfgfV~f~~~e~ 282 (577)
...+.+.........-. ......+..-+||+||+..+++..++.++...+.+..+. ..+..+|.++||||++|.+.+.
T Consensus 254 ~sEaeknr~a~~s~a~~-~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQ-GKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred ccHHHHHHHHhcccccc-ccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 88776655322222111 001111112159999999999999998855222111111 1224599999999999999999
Q ss_pred HHHHHHHHhhh
Q 008117 283 DQEALEKLTCM 293 (577)
Q Consensus 283 a~~Al~~l~~~ 293 (577)
|..|++.||++
T Consensus 333 ar~a~e~lngf 343 (549)
T KOG0147|consen 333 ARKALEQLNGF 343 (549)
T ss_pred HHHHHHHhccc
Confidence 99999999995
No 34
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=4.5e-14 Score=121.37 Aligned_cols=83 Identities=22% Similarity=0.391 Sum_probs=79.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
..++|||||||++.++++.|.+||++||.|..|.|-.|+.+..+.|||||+|.+.++|..|+..|+|+.|+.+.|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhh
Q 008117 206 QAT 208 (577)
Q Consensus 206 ~~~ 208 (577)
...
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 653
No 35
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.1e-13 Score=134.89 Aligned_cols=83 Identities=18% Similarity=0.406 Sum_probs=79.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
..+.+||||+-|++.+++..|+..|..||.|..|.||.+..||+++|||||+|.+..+...|....+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
...
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 644
No 36
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=4.3e-13 Score=132.28 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....+.|+|+|||+...+-||+.+|.+||.|.+|.|+.+ .-.+||||||+|.++++|.+|-..|||..|.||+|.|+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 445789999999999999999999999999999999997 578899999999999999999999999999999999998
Q ss_pred chhh
Q 008117 205 DQAT 208 (577)
Q Consensus 205 a~~~ 208 (577)
+...
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 7665
No 37
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=6.1e-13 Score=126.57 Aligned_cols=82 Identities=23% Similarity=0.340 Sum_probs=79.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
....+|-|.||+.++++.+|.+||.+||.|..|.|+.|+.||.++|||||.|.+.++|.+||..|||+-++...|.|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
.+
T Consensus 267 kP 268 (270)
T KOG0122|consen 267 KP 268 (270)
T ss_pred CC
Confidence 65
No 38
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=8.3e-13 Score=131.10 Aligned_cols=85 Identities=19% Similarity=0.342 Sum_probs=81.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
.++-..|||..|++.+|+++|..||+.||+|.+|.|+.+..||.+..||||+|.+.+++.+|...|+++.|+.+.|+|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhH
Q 008117 205 DQATR 209 (577)
Q Consensus 205 a~~~~ 209 (577)
+++..
T Consensus 316 SQSVs 320 (479)
T KOG0415|consen 316 SQSVS 320 (479)
T ss_pred hhhhh
Confidence 98863
No 39
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=2.9e-13 Score=128.40 Aligned_cols=81 Identities=23% Similarity=0.345 Sum_probs=74.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
+...+.||||||++.++.+.|+.+|..||.|+...|+.|+.||+++|||||+|.+.++|.+|+.. ..-.|+||+..|++
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 45578999999999999999999999999999999999999999999999999999999999985 56789999998886
Q ss_pred ch
Q 008117 205 DQ 206 (577)
Q Consensus 205 a~ 206 (577)
+-
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 63
No 40
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.39 E-value=2e-12 Score=103.21 Aligned_cols=70 Identities=33% Similarity=0.575 Sum_probs=65.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008117 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (577)
Q Consensus 131 lfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~ 201 (577)
|||+|||+++++++|..+|+.||.|..+.+..++. |.++++|||+|.+.++|..|+..++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 99999999999999999999999999999999874
No 41
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.37 E-value=8.2e-13 Score=122.50 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|-|-||.+.++.++|..+|.+||.|..|.|..|+.|+.++|||||-|.+..+|+.|+.+|+|.+|+|+.|.|.+|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 55
No 42
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.37 E-value=1.9e-12 Score=142.37 Aligned_cols=82 Identities=24% Similarity=0.428 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+||++.+++++|+.+|+.||.|.+|+|+.++.+|.++|||||+|.+.++|..||..|||+.|+|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 282 i~ 283 (612)
T TIGR01645 282 VT 283 (612)
T ss_pred CC
Confidence 64
No 43
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.37 E-value=2.7e-12 Score=126.01 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=70.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~ 207 (577)
.++|||+||++.+|+.+|+.||+.||.|..|.|+.+. .++|||||+|.+.++|..||. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999998874 356899999999999999996 999999999999998764
No 44
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.36 E-value=2.8e-12 Score=133.93 Aligned_cols=81 Identities=23% Similarity=0.393 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 204 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~g--r~i~V~~ 204 (577)
..++|||+|||+.+|+++|+.+|++||.|..|.|+.++.+|+++|||||+|.+.++|..||..||++.|.| +.|.|.|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999876 6888888
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 272 a~~ 274 (346)
T TIGR01659 272 AEE 274 (346)
T ss_pred CCc
Confidence 765
No 45
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=6.5e-12 Score=120.14 Aligned_cols=81 Identities=20% Similarity=0.315 Sum_probs=77.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.....|||-||.+++.+.-|.++|..||.|..|+|++|..|.+++|||||.+.+.++|..||..|||+.++++.|.|.|.
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred h
Q 008117 206 Q 206 (577)
Q Consensus 206 ~ 206 (577)
.
T Consensus 356 t 356 (360)
T KOG0145|consen 356 T 356 (360)
T ss_pred c
Confidence 4
No 46
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2.1e-12 Score=117.21 Aligned_cols=76 Identities=29% Similarity=0.455 Sum_probs=70.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
..+.||||||+..++..+|..+|..||.|.+|-|..+ +.|||||+|.++.+|..|+..|+|..|.|..|.|.++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3789999999999999999999999999999877664 46999999999999999999999999999999998775
Q ss_pred h
Q 008117 207 A 207 (577)
Q Consensus 207 ~ 207 (577)
.
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 5
No 47
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=1.4e-13 Score=125.21 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=76.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
...+.-|||||||+.+|+.+|..+|+.||.|+.|.+++|+.||+++||||+-|.+..+...|+..|||+.|.|+.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred c
Q 008117 205 D 205 (577)
Q Consensus 205 a 205 (577)
.
T Consensus 112 v 112 (219)
T KOG0126|consen 112 V 112 (219)
T ss_pred c
Confidence 3
No 48
>PLN03213 repressor of silencing 3; Provisional
Probab=99.33 E-value=3.9e-12 Score=131.09 Aligned_cols=85 Identities=20% Similarity=0.381 Sum_probs=74.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCH--HHHHHHHHHhCCceeCCeEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA--EGVLRALRLLNKFNIDGQELMLK 203 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~--~~A~~Al~~Lng~~i~gr~i~V~ 203 (577)
....+||||||++.+|+++|..+|..||.|..|.|++ .+| +|||||+|.+. .++.+||..|||..|.|+.|+|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 4568999999999999999999999999999999994 477 89999999987 78999999999999999999998
Q ss_pred EchhhHHHHHhhh
Q 008117 204 VDQATREYLERYV 216 (577)
Q Consensus 204 ~a~~~~~~~~~~~ 216 (577)
.|.. .|+....
T Consensus 84 KAKP--~YLeRLk 94 (759)
T PLN03213 84 KAKE--HYLARLK 94 (759)
T ss_pred eccH--HHHHHHH
Confidence 7754 3444433
No 49
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=1.2e-11 Score=118.83 Aligned_cols=81 Identities=21% Similarity=0.356 Sum_probs=72.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC---CeEEEEE
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMLK 203 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~---gr~i~V~ 203 (577)
..+.||||-|...-++++++.+|..||.|.+|.+...+ .|.+|||+||.|.+..+|..||..|||..-. ...|+|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 57899999999999999999999999999999999884 8999999999999999999999999997543 3578898
Q ss_pred Echhh
Q 008117 204 VDQAT 208 (577)
Q Consensus 204 ~a~~~ 208 (577)
|++..
T Consensus 97 ~ADTd 101 (371)
T KOG0146|consen 97 FADTD 101 (371)
T ss_pred eccch
Confidence 76554
No 50
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.30 E-value=1.2e-12 Score=132.96 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=120.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
..+.||||+|++.++++.|+..|..||.|..|.|+.++.++.++||+||+|.+...+..+|.. .-+.|+|+.|.+.-+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 578999999999999999999999999999999999999999999999999999999888874 6778999999987665
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008117 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQE 285 (577)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~-~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~ 285 (577)
+........ ....+...||+.|+..+++.++++.+...+ +.....-.+..+.+++|||||.|.+.++..+
T Consensus 84 ~r~~~~~~~---------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 84 SREDQTKVG---------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred Ccccccccc---------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccce
Confidence 532111110 011233459999999999999998844222 2111122347788999999999999998888
Q ss_pred HHHHH
Q 008117 286 ALEKL 290 (577)
Q Consensus 286 Al~~l 290 (577)
++...
T Consensus 155 v~~~~ 159 (311)
T KOG4205|consen 155 VTLQK 159 (311)
T ss_pred ecccc
Confidence 77543
No 51
>smart00362 RRM_2 RNA recognition motif.
Probab=99.29 E-value=1.9e-11 Score=96.41 Aligned_cols=71 Identities=30% Similarity=0.539 Sum_probs=67.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008117 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (577)
Q Consensus 130 tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V 202 (577)
+|||+|||..++..+|..+|..||.|..+.+..+. +.++|||||+|.+..+|..|+..|+|..|.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998875 788999999999999999999999999999999987
No 52
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=1.5e-11 Score=112.26 Aligned_cols=154 Identities=16% Similarity=0.191 Sum_probs=109.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||||||.++.+.+|..||.+||.|..|.+... ..+.+||||+|+++.+|..||..-+|+.++|..|.|.|+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45789999999999999999999999999999987543 345689999999999999999999999999999999998
Q ss_pred hhhHHHHHh---hhhhhhhc--------cccccccccccccCCCcccchhhhcCCCC----CCcccccCCCCCCCCCCCC
Q 008117 206 QATREYLER---YVDKKTEN--------TKKLKETQDAGAGKEDESVQSVEKNEPTK----SPENLKDNETGNKESHDPT 270 (577)
Q Consensus 206 ~~~~~~~~~---~~~~k~~~--------~~~~~~~~~~~v~nl~~~~~~~~l~e~~k----s~~~~k~~~~~~~~~g~~k 270 (577)
.....-... +...-.-- .-..-....+.|..|+.+.+=.+|+.... .+. ... .--
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCf-adv---------~rD 150 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCF-ADV---------QRD 150 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeee-eee---------ecc
Confidence 764311100 00000000 00000111246788898888777766521 222 111 112
Q ss_pred ceEEEEeCCHHHHHHHHHHHhh
Q 008117 271 NFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 271 gfgfV~f~~~e~a~~Al~~l~~ 292 (577)
|+|+|.|-..++..-|+.+|..
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~ 172 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDD 172 (241)
T ss_pred cceeeeeeehhhHHHHHHhhcc
Confidence 5899999999999999887754
No 53
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=6.3e-12 Score=109.10 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.....|||.++...+|+++|...|..||.|+.+.+..|..||..+||++|+|.+...|+.||..|||..|.|+.|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
-.
T Consensus 150 Fv 151 (170)
T KOG0130|consen 150 FV 151 (170)
T ss_pred Ee
Confidence 43
No 54
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.28 E-value=1.6e-11 Score=118.64 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=69.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
...+|||+||++.+|+.+|+.||+.||.|..|.|+.+ +...|||||+|.+..+|..||. |||..|.++.|.|.-..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999999999999987 4556899999999999999996 89999999999996543
No 55
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.27 E-value=7.9e-12 Score=132.33 Aligned_cols=82 Identities=33% Similarity=0.594 Sum_probs=79.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhh
Q 008117 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (577)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~~ 208 (577)
+.|||||||+.++++.|..+|+..|.|.+++++.|+.||+++|||||+|.+.+.|..|+..|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred HH
Q 008117 209 RE 210 (577)
Q Consensus 209 ~~ 210 (577)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 56
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.4e-12 Score=118.58 Aligned_cols=84 Identities=21% Similarity=0.395 Sum_probs=80.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++||||+|...|++.-|...|-.||.|..+.++.|-.+++++|||||+|...++|..||..||+.+|.|+.|+|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhH
Q 008117 206 QATR 209 (577)
Q Consensus 206 ~~~~ 209 (577)
.+.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 7654
No 57
>smart00360 RRM RNA recognition motif.
Probab=99.23 E-value=4.9e-11 Score=93.64 Aligned_cols=70 Identities=31% Similarity=0.539 Sum_probs=66.9
Q ss_pred EcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008117 133 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (577)
Q Consensus 133 VgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V 202 (577)
|+|||..++.++|+.+|..||.|..+.+..++.++.++|||||+|.+.++|..|+..|++..|+|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999998778999999999999999999999999999999999887
No 58
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.23 E-value=4.5e-11 Score=113.43 Aligned_cols=152 Identities=13% Similarity=0.142 Sum_probs=116.3
Q ss_pred CceEEEcCCCCCCCHHHHHH----HHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008117 128 QTKVYVGKIAPTADSDFVLS----VLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~----~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~ 203 (577)
..||||.||+..+..++|+. ||+.||.|+.|.+.. |.+.+|-|||.|.+...|..|+..|+|+.|.|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999998887 999999999987753 78899999999999999999999999999999999999
Q ss_pred EchhhHHHHHhhh---h---hh--hhc---------------------------cccccccccccccCCCcccchhhhcC
Q 008117 204 VDQATREYLERYV---D---KK--TEN---------------------------TKKLKETQDAGAGKEDESVQSVEKNE 248 (577)
Q Consensus 204 ~a~~~~~~~~~~~---~---~k--~~~---------------------------~~~~~~~~~~~v~nl~~~~~~~~l~e 248 (577)
+|......+.... . ++ .+. .....+.++.|+.||+..++.+.+..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 9988776665521 0 00 000 01134456689999999998887766
Q ss_pred CCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 249 PTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 249 ~~k------s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
++. .+..+. .-.+.+||+|.+...+..|...+.+
T Consensus 166 lf~qf~g~keir~i~----------~~~~iAfve~~~d~~a~~a~~~lq~ 205 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIP----------PRSGIAFVEFLSDRQASAAQQALQG 205 (221)
T ss_pred HHhhCcccceeEecc----------CCCceeEEecchhhhhHHHhhhhcc
Confidence 632 111221 1357999999998887777666554
No 59
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=3.1e-11 Score=116.43 Aligned_cols=78 Identities=24% Similarity=0.394 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
.+..++||||||+..+|+++|+..|+.||.|..|+|..+ +||+||.|.+.++|..||..+|+..|+|..+++.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 456899999999999999999999999999999999988 49999999999999999999999999999999998
Q ss_pred chhh
Q 008117 205 DQAT 208 (577)
Q Consensus 205 a~~~ 208 (577)
.+..
T Consensus 235 GKe~ 238 (321)
T KOG0148|consen 235 GKEG 238 (321)
T ss_pred cccC
Confidence 7553
No 60
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=9.9e-11 Score=97.27 Aligned_cols=84 Identities=15% Similarity=0.280 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.-.+.|||.|||+.+|.+++..||.+||.|..++|-. +...+|.|||.|++..+|.+|+..|+|+.+.++.|.|-+-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3478899999999999999999999999999999844 4566899999999999999999999999999999999988
Q ss_pred hhhHHHH
Q 008117 206 QATREYL 212 (577)
Q Consensus 206 ~~~~~~~ 212 (577)
+....+.
T Consensus 93 q~~~~~~ 99 (124)
T KOG0114|consen 93 QPEDAFK 99 (124)
T ss_pred CHHHHHH
Confidence 7765544
No 61
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.21 E-value=1.4e-10 Score=118.19 Aligned_cols=165 Identities=16% Similarity=0.211 Sum_probs=118.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHh-hcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~-~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
...+.+||.|||+++.+.+|+.||. +.|.|.+|.+..| .+|+++|||.|+|.+++.+++|++.||.+.+.|+.|+|+-
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3456799999999999999999996 6889999999999 6999999999999999999999999999999999999984
Q ss_pred chhhHHH-------------HH--------------------------------------------hhhh----------
Q 008117 205 DQATREY-------------LE--------------------------------------------RYVD---------- 217 (577)
Q Consensus 205 a~~~~~~-------------~~--------------------------------------------~~~~---------- 217 (577)
....+.. +. .|..
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 3321100 00 0000
Q ss_pred -hhhhcccc--ccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHh
Q 008117 218 -KKTENTKK--LKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLT 291 (577)
Q Consensus 218 -~k~~~~~~--~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~ 291 (577)
.-...+.. ....+-.||.||...+....|.+.++-.+.+.-.+..-++.|.++||+.+.|.++-.|.+||.++.
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~ 277 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLD 277 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhc
Confidence 00000000 111122378888888877777766542222222222335667899999999999999999998887
No 62
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=1.2e-10 Score=118.90 Aligned_cols=83 Identities=18% Similarity=0.302 Sum_probs=78.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
.+.+.+|||++||....+.+|...|..||.|++.++..|+.||-++|||||.|++..+|..||..|||..|++++|+|.+
T Consensus 421 GpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQl 500 (510)
T KOG0144|consen 421 GPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQL 500 (510)
T ss_pred CCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEe
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
...
T Consensus 501 k~~ 503 (510)
T KOG0144|consen 501 KRD 503 (510)
T ss_pred eec
Confidence 543
No 63
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.19 E-value=7.1e-11 Score=118.18 Aligned_cols=79 Identities=27% Similarity=0.462 Sum_probs=76.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
..+|||||||..+|+++|..+|..||.|..+.+..++.+|.++|||||.|.+.++|..|+..|+|..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999999999998899999999999999999999999999999999999999864
No 64
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.17 E-value=2.4e-10 Score=90.52 Aligned_cols=74 Identities=27% Similarity=0.486 Sum_probs=68.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 130 tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
+|||+|||..++.++|..+|..||.|..+.+..++.+ .+.|+|||.|.+.++|..|+..|++..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999987543 7789999999999999999999999999999999853
No 65
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.14 E-value=3.9e-10 Score=106.00 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=69.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY-PSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELM 201 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~-~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~---gr~i~ 201 (577)
...+||||++||.++..-+|..||..|-....+.+..- +...-++-+|||+|.+..+|..|+..|||+.|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34799999999999999999999999988877766442 222224579999999999999999999999996 88899
Q ss_pred EEEchhh
Q 008117 202 LKVDQAT 208 (577)
Q Consensus 202 V~~a~~~ 208 (577)
|.++++.
T Consensus 112 iElAKSN 118 (284)
T KOG1457|consen 112 IELAKSN 118 (284)
T ss_pred eeehhcC
Confidence 9877653
No 66
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=2.8e-10 Score=113.65 Aligned_cols=101 Identities=28% Similarity=0.472 Sum_probs=90.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-------CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEE
Q 008117 104 GVRPIMPPVVRPVPLPTVTPA-------EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCE 176 (577)
Q Consensus 104 g~~p~~pp~~~p~~~~~~~~~-------~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~ 176 (577)
|.+.+ .+++|+++|+..+. ......|||..+.++.++++|+.+|..||.|++|.+..++.++.++|||||+
T Consensus 181 GGRNi--KVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiE 258 (544)
T KOG0124|consen 181 GGRNI--KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIE 258 (544)
T ss_pred cCccc--cccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEE
Confidence 33555 67788888877654 4567899999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 177 FESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 177 f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
|.+..+...||..||-+.|+|+.|+|.-+.
T Consensus 259 y~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 259 YNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred eccccchHHHhhhcchhhcccceEeccccc
Confidence 999999999999999999999999997543
No 67
>smart00361 RRM_1 RNA recognition motif.
Probab=99.03 E-value=1.1e-09 Score=87.49 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=55.1
Q ss_pred HHHHHHHHh----hcCceEEEE-EeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008117 142 SDFVLSVLK----VCGTVKSWK-RAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (577)
Q Consensus 142 e~~L~~~F~----~~G~v~~~~-i~~~~~t--g~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V 202 (577)
+++|..+|. .||.|.++. |+.++.+ |.++|||||+|.+.++|..|+..|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 467888888 999999995 7776666 999999999999999999999999999999999986
No 68
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.03 E-value=2.5e-09 Score=102.70 Aligned_cols=89 Identities=18% Similarity=0.387 Sum_probs=80.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
......||+|.|...++++.|-..|.+|-.....++++++.||+++|||||.|.++.++..|+..|||..++.+.|.+.-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred chhhHHHHH
Q 008117 205 DQATREYLE 213 (577)
Q Consensus 205 a~~~~~~~~ 213 (577)
+.+....++
T Consensus 267 S~wkeRn~d 275 (290)
T KOG0226|consen 267 SEWKERNLD 275 (290)
T ss_pred hhHHhhhhH
Confidence 555543333
No 69
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.02 E-value=3.1e-10 Score=119.46 Aligned_cols=77 Identities=26% Similarity=0.517 Sum_probs=73.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
...||||||.+++++++|+.+|..||.|..|.+..+..||.++|||||+|.+.++|..|+..|||++|-|+.|+|.+
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 34499999999999999999999999999999999988999999999999999999999999999999999999863
No 70
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.01 E-value=1.6e-09 Score=82.49 Aligned_cols=56 Identities=29% Similarity=0.452 Sum_probs=50.6
Q ss_pred HHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 145 VLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 145 L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
|..+|++||.|..+.+.... .++|||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987652 589999999999999999999999999999999885
No 71
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.95 E-value=6.2e-09 Score=108.51 Aligned_cols=163 Identities=17% Similarity=0.183 Sum_probs=118.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
...-|-+.+||+++|+++|..||+.|+ |..+.+.+ .+|++.|-|||+|.+.+++..|++ ++...++.+.|.|-.+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 456677889999999999999999998 56655444 589999999999999999999999 49999999999997664
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCccccc-CCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008117 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKD-NETGNKESHDPTNFGVVTEEDRKADQE 285 (577)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~-~~~~~~~~g~~kgfgfV~f~~~e~a~~ 285 (577)
.... + |.-+.. -........++-...||..+++.+|.+|+.-..+..+ +-......+++.|-+||.|++.+.|++
T Consensus 85 ~~e~--d-~~~~~~-g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 85 GAEA--D-WVMRPG-GPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred Cccc--c-ccccCC-CCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHH
Confidence 4321 1 111110 0011112223455679999999999999441111111 112235667899999999999999999
Q ss_pred HHHHHhhhHHHH
Q 008117 286 ALEKLTCMVEER 297 (577)
Q Consensus 286 Al~~l~~~i~e~ 297 (577)
||.+.+..|..+
T Consensus 161 Al~rhre~iGhR 172 (510)
T KOG4211|consen 161 ALGRHRENIGHR 172 (510)
T ss_pred HHHHHHHhhccc
Confidence 999998887655
No 72
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=7.3e-10 Score=106.25 Aligned_cols=151 Identities=19% Similarity=0.226 Sum_probs=106.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhh
Q 008117 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (577)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~~ 208 (577)
..||||+||+.+.+.+|..||..||.|..|.+.. ||+||+|.+..+|..||.-||+..|.|-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4689999999999999999999999999988743 69999999999999999999999999999999888754
Q ss_pred HHHHHhhhhh-----hhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHH
Q 008117 209 REYLERYVDK-----KTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKAD 283 (577)
Q Consensus 209 ~~~~~~~~~~-----k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a 283 (577)
+.....-... ..............++.++...+...++.....-++.... .. -..+|+||.|.+..++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~-----~~--~~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTY-----VD--ARRNFAFVEFSEQEDA 146 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCch-----hh--hhccccceeehhhhhh
Confidence 3222110000 0000001111222566777777766666555221111110 00 1578999999999999
Q ss_pred HHHHHHHhhhH
Q 008117 284 QEALEKLTCMV 294 (577)
Q Consensus 284 ~~Al~~l~~~i 294 (577)
..|+..|++.-
T Consensus 147 ~ra~~~l~~~~ 157 (216)
T KOG0106|consen 147 KRALEKLDGKK 157 (216)
T ss_pred hhcchhccchh
Confidence 99999887753
No 73
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.93 E-value=8.4e-10 Score=107.66 Aligned_cols=76 Identities=24% Similarity=0.432 Sum_probs=72.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
.+..++||||||.+.|+..+|+..|.+||+|..|.|+.+ |+||.|.-.++|..||+.||+.+|.|++++|.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 557899999999999999999999999999999999886 999999999999999999999999999999998
Q ss_pred chhh
Q 008117 205 DQAT 208 (577)
Q Consensus 205 a~~~ 208 (577)
+.+.
T Consensus 147 stsr 150 (346)
T KOG0109|consen 147 STSR 150 (346)
T ss_pred eccc
Confidence 8764
No 74
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.92 E-value=1.4e-09 Score=99.58 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=75.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~-~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.+||||||.+.+.+..|..+|+.||.+.+. +|++++.||.++|||||.|.+.+.+.+||..+||..++.++|.|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 45899999999999999999999999987664 78889999999999999999999999999999999999999999877
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 175 ~k 176 (203)
T KOG0131|consen 175 FK 176 (203)
T ss_pred Ee
Confidence 54
No 75
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.90 E-value=6.8e-09 Score=97.17 Aligned_cols=85 Identities=25% Similarity=0.330 Sum_probs=77.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhc-CceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008117 124 AEKPQTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (577)
Q Consensus 124 ~~~~~~tlfVgnLp~~~te~~L~~~F~~~-G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V 202 (577)
.......+||..||..+.+.++..+|..| |.|..+++.+++.||.++|||||+|.+.+.|..|-..||++.|.|+.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34557789999999999999999999999 67778888899999999999999999999999999999999999999999
Q ss_pred EEchhh
Q 008117 203 KVDQAT 208 (577)
Q Consensus 203 ~~a~~~ 208 (577)
.|-...
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 876554
No 76
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.87 E-value=1.4e-08 Score=101.55 Aligned_cols=86 Identities=24% Similarity=0.374 Sum_probs=76.0
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhhcCceE--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 008117 120 TVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (577)
Q Consensus 120 ~~~~~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~--------~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Ln 191 (577)
...+.....+.|||+|||.++|.+++..+|++||.|. .|++..+. .|+.+|=|.|.|...+++..||..|+
T Consensus 126 ~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilD 204 (382)
T KOG1548|consen 126 WFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILD 204 (382)
T ss_pred ccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhC
Confidence 3344455678899999999999999999999999886 47888884 69999999999999999999999999
Q ss_pred CceeCCeEEEEEEch
Q 008117 192 KFNIDGQELMLKVDQ 206 (577)
Q Consensus 192 g~~i~gr~i~V~~a~ 206 (577)
+..|.|+.|+|..|+
T Consensus 205 e~~~rg~~~rVerAk 219 (382)
T KOG1548|consen 205 EDELRGKKLRVERAK 219 (382)
T ss_pred cccccCcEEEEehhh
Confidence 999999999998654
No 77
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=8.2e-09 Score=110.22 Aligned_cols=167 Identities=20% Similarity=0.214 Sum_probs=114.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
.-....+|||+||..+++..+.+++..||.+..+.++.+..+|.++||||++|.++.-...|+..|||..++++.|+|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred chhhHHHHHhhhh--h-------hhhccccccccccccccCCC---cccchhhhcCC--------CC-----CCcccccC
Q 008117 205 DQATREYLERYVD--K-------KTENTKKLKETQDAGAGKED---ESVQSVEKNEP--------TK-----SPENLKDN 259 (577)
Q Consensus 205 a~~~~~~~~~~~~--~-------k~~~~~~~~~~~~~~v~nl~---~~~~~~~l~e~--------~k-----s~~~~k~~ 259 (577)
+-........+.. . ..........+.++...|+- .-..+.++.++ ++ ++.+.+..
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~ 445 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPY 445 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCC
Confidence 6544333322222 0 00001122233332222220 11122222222 11 22233321
Q ss_pred CCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 260 ETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 260 ~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+......-|-=||+|.+.+++..|+..|++.
T Consensus 446 --~~~~~~~G~GkVFVefas~ed~qrA~~~L~Gr 477 (500)
T KOG0120|consen 446 --PDENPVPGTGKVFVEFADTEDSQRAMEELTGR 477 (500)
T ss_pred --CCCCcCCCcccEEEEecChHHHHHHHHHccCc
Confidence 12333344566799999999999999999874
No 78
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=5.1e-09 Score=98.42 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=70.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
..+||||+|+...|+++.|.++|-..|+|..|.|..+. .+..+ ||||.|.+..++.-|+..|||..+.+..|.|.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 47899999999999999999999999999999998874 56666 999999999999999999999999999998864
No 79
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.72 E-value=4.4e-09 Score=106.31 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=60.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE-E
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP---SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML-K 203 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~---~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V-~ 203 (577)
...|.|.||.+.+|.+++..||...|.|..+.|+.+. ........|||.|.+...+..|-. |..+.|-++.|.| -
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 3489999999999999999999999999999887643 222335689999999999988887 5555555555544 4
Q ss_pred Echh
Q 008117 204 VDQA 207 (577)
Q Consensus 204 ~a~~ 207 (577)
+...
T Consensus 86 ~~~~ 89 (479)
T KOG4676|consen 86 YGDE 89 (479)
T ss_pred cCCC
Confidence 4433
No 80
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=3.3e-08 Score=99.00 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=71.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HhCCceeCCeEEE
Q 008117 123 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR-LLNKFNIDGQELM 201 (577)
Q Consensus 123 ~~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~-~Lng~~i~gr~i~ 201 (577)
|.+....+||||+|...+++.+|+.+|.+||.|.++.++.. ++||||+|.+..+|+.|.. .+|...|+|++|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 44667899999999999999999999999999999999876 3799999999999998874 5688889999999
Q ss_pred EEEchh
Q 008117 202 LKVDQA 207 (577)
Q Consensus 202 V~~a~~ 207 (577)
|.|+..
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999877
No 81
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.71 E-value=2.5e-08 Score=108.71 Aligned_cols=74 Identities=14% Similarity=0.254 Sum_probs=70.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~ 207 (577)
++|||||+|+.++++.+|..+|..||.|.+|.++.. +|||||.+....+|.+|+..|+.+.|.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 689999999999999999999999999999998765 58999999999999999999999999999999999865
No 82
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.65 E-value=2.4e-08 Score=108.14 Aligned_cols=86 Identities=24% Similarity=0.374 Sum_probs=78.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....+.|+|.|||+..+-.+++.||..||.|.+|.|+.-...+.++|||||+|-++.+|.+|+.+|.++.|.|+.|++.|
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 44578999999999999999999999999999999987656677899999999999999999999999999999999999
Q ss_pred chhhHH
Q 008117 205 DQATRE 210 (577)
Q Consensus 205 a~~~~~ 210 (577)
+..-..
T Consensus 690 A~~d~~ 695 (725)
T KOG0110|consen 690 AKSDNT 695 (725)
T ss_pred hccchH
Confidence 876543
No 83
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.65 E-value=3.4e-07 Score=93.41 Aligned_cols=155 Identities=15% Similarity=0.159 Sum_probs=109.2
Q ss_pred CceEEEcCCCC-CCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 128 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 128 ~~tlfVgnLp~-~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
...|.|.||.. .+|.+-|..+|+-||.|..|+|..++ +.-|.|.|.+...|.-|+..|+|+.|.|+.|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 68899999975 79999999999999999999999874 2579999999999999999999999999999999887
Q ss_pred hhHHHHHhhh-----------h-----hhhhcccc----ccccccccccCCCcccchhhhcCCCC-CCcccccCCCCCCC
Q 008117 207 ATREYLERYV-----------D-----KKTENTKK----LKETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKE 265 (577)
Q Consensus 207 ~~~~~~~~~~-----------~-----~k~~~~~~----~~~~~~~~v~nl~~~~~~~~l~e~~k-s~~~~k~~~~~~~~ 265 (577)
.....+.... . .++...++ ..+....-..|++.+++++++..++. ..+.++.+ +-
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkaf----kf 447 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAF----KF 447 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEee----ee
Confidence 6533322211 1 11111111 11111223578999999999988843 11111111 11
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHHh
Q 008117 266 SHDPTNFGVVTEEDRKADQEALEKLT 291 (577)
Q Consensus 266 ~g~~kgfgfV~f~~~e~a~~Al~~l~ 291 (577)
-++.+-++.+.+++.+.|..|+-.++
T Consensus 448 f~kd~kmal~q~~sveeA~~ali~~h 473 (492)
T KOG1190|consen 448 FQKDRKMALPQLESVEEAIQALIDLH 473 (492)
T ss_pred cCCCcceeecccCChhHhhhhccccc
Confidence 23345588899999988888766553
No 84
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.53 E-value=2.4e-07 Score=100.21 Aligned_cols=85 Identities=25% Similarity=0.368 Sum_probs=75.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 008117 123 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP---SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 199 (577)
Q Consensus 123 ~~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~---~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~ 199 (577)
..++..++||||||++.+++.+|...|..||+|.+++|+... ..-....||||.|-+..+|.+|+..|+|..|.+..
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 345678999999999999999999999999999999998764 22345679999999999999999999999999999
Q ss_pred EEEEEchh
Q 008117 200 LMLKVDQA 207 (577)
Q Consensus 200 i~V~~a~~ 207 (577)
|++.|+.+
T Consensus 249 ~K~gWgk~ 256 (877)
T KOG0151|consen 249 MKLGWGKA 256 (877)
T ss_pred eeeccccc
Confidence 99999854
No 85
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.53 E-value=1.9e-07 Score=95.71 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=68.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....|+|||.|||+++|+..|+.-|..||.|.++.|+. .|+++| .|.|.++++|+.|+..|||..|.|+.|.|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 45678999999999999999999999999999999854 577776 8999999999999999999999999999975
No 86
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.50 E-value=3.4e-08 Score=99.96 Aligned_cols=66 Identities=14% Similarity=-0.026 Sum_probs=55.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~ 196 (577)
...+||+|++|+..+-..++-.+|..+|.|.+..+. .|....||.|+|....+...|+.. +|..+.
T Consensus 149 eirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 149 EIRRTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred HHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 345899999999999999999999999999988773 445556888999999999999984 777664
No 87
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.47 E-value=5.4e-07 Score=95.36 Aligned_cols=77 Identities=26% Similarity=0.405 Sum_probs=66.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
...+|||.|||++++..+|.++|..||.|+...|..-.-.++..|||||+|.+..++..||.+ +-..|+|++|.|.-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 345699999999999999999999999999888766432345559999999999999999997 78999999999953
No 88
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.46 E-value=5.6e-07 Score=88.40 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=74.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|+|.||++.|++.+|++||..||.+..+.|.+++ .|.+.|+|-|.|...++|..|+..|||+.++|+.|.+.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 4456889999999999999999999999999999998885 899999999999999999999999999999999999875
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
...
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 543
No 89
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.45 E-value=2.5e-07 Score=91.05 Aligned_cols=80 Identities=25% Similarity=0.387 Sum_probs=75.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
......+||||+.+.+|...+...|..||.|..+.|..+..+|.++||+||+|.+...+..||. |||..|.|+.|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4567899999999999999999999999999999999999999999999999999999999999 899999999999864
Q ss_pred c
Q 008117 205 D 205 (577)
Q Consensus 205 a 205 (577)
-
T Consensus 177 ~ 177 (231)
T KOG4209|consen 177 K 177 (231)
T ss_pred e
Confidence 3
No 90
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=7.9e-07 Score=97.11 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=4.0
Q ss_pred CCceEEEc
Q 008117 127 PQTKVYVG 134 (577)
Q Consensus 127 ~~~tlfVg 134 (577)
+....||+
T Consensus 640 s~~cFWvk 647 (1102)
T KOG1924|consen 640 SENCFWVK 647 (1102)
T ss_pred Cccceeee
Confidence 34455664
No 91
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.40 E-value=9.4e-07 Score=85.22 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=101.5
Q ss_pred CceEEEcCCCCCCCHHH-H--HHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 128 QTKVYVGKIAPTADSDF-V--LSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~-L--~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
...+|++++-..+..+- | -..|+.|-.+...+++.+ ..+...+++|+.|........+...-++..|+-..|++.-
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhc-CCCccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 44556666655555543 2 567787877777777777 4677889999999988887777776677777766655432
Q ss_pred chhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCC-CC--CCcccccCCCCCCCCCCCCceEEEEeCCHH
Q 008117 205 DQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEP-TK--SPENLKDNETGNKESHDPTNFGVVTEEDRK 281 (577)
Q Consensus 205 a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~-~k--s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e 281 (577)
+.. |........ ...... +|++.|...++++.+... .+ +.-..+...+ +-+|+++|||||.|.+..
T Consensus 175 gts-------wedPsl~ew-~~~DfR-IfcgdlgNevnd~vl~raf~Kfpsf~~akviRd--kRTgKSkgygfVSf~~pa 243 (290)
T KOG0226|consen 175 GTS-------WEDPSLAEW-DEDDFR-IFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRD--KRTGKSKGYGFVSFRDPA 243 (290)
T ss_pred ccc-------cCCcccccC-ccccce-eecccccccccHHHHHHHHHhccchhhcccccc--ccccccccceeeeecCHH
Confidence 211 111111111 111122 488999888888877554 22 3333333333 789999999999999999
Q ss_pred HHHHHHHHHhhh
Q 008117 282 ADQEALEKLTCM 293 (577)
Q Consensus 282 ~a~~Al~~l~~~ 293 (577)
++..|+..|++.
T Consensus 244 d~~rAmrem~gk 255 (290)
T KOG0226|consen 244 DYVRAMREMNGK 255 (290)
T ss_pred HHHHHHHhhccc
Confidence 999998888765
No 92
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.35 E-value=7.5e-07 Score=95.45 Aligned_cols=165 Identities=18% Similarity=0.196 Sum_probs=114.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhc-----------C-ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 008117 122 TPAEKPQTKVYVGKIAPTADSDFVLSVLKVC-----------G-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189 (577)
Q Consensus 122 ~~~~~~~~tlfVgnLp~~~te~~L~~~F~~~-----------G-~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~ 189 (577)
.........+||+++++.++++.+..+|..- | .|+.|.+-.. +.|+|++|.+...|..|+.
T Consensus 169 ~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~------~nfa~ie~~s~~~at~~~~- 241 (500)
T KOG0120|consen 169 SQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE------KNFAFIEFRSISEATEAMA- 241 (500)
T ss_pred cchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc------ccceeEEecCCCchhhhhc-
Confidence 3345567899999999999999999999753 3 3666666444 5799999999999999998
Q ss_pred hCCceeCCeEEEEEEchhh---HHHHHhhh-----hhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCC
Q 008117 190 LNKFNIDGQELMLKVDQAT---REYLERYV-----DKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNET 261 (577)
Q Consensus 190 Lng~~i~gr~i~V~~a~~~---~~~~~~~~-----~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~ 261 (577)
+++..+.|..+++.--... ...+.... .............+-.||++|+..+++..+.++..+++..+..+.
T Consensus 242 ~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~l 321 (500)
T KOG0120|consen 242 LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRL 321 (500)
T ss_pred ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhhee
Confidence 7999999998887522111 11111110 000000111111222499999999999999888554443333332
Q ss_pred -CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 262 -GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 262 -~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+..+|.++||+|++|.+.-....|+..||++
T Consensus 322 v~d~~~g~skg~af~ey~dpsvtd~A~agLnGm 354 (500)
T KOG0120|consen 322 VKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGM 354 (500)
T ss_pred ecccccccccceeeeeeeCCcchhhhhcccchh
Confidence 23555899999999999999999999999987
No 93
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.34 E-value=4e-07 Score=96.74 Aligned_cols=78 Identities=13% Similarity=0.177 Sum_probs=64.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhh-cCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CCeE
Q 008117 124 AEKPQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQE 199 (577)
Q Consensus 124 ~~~~~~tlfVgnLp~~~te~~L~~~F~~-~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i---~gr~ 199 (577)
....+..|||.||-.-+|.-.|+.|+.. +|.|..+ +.| +.+..|||.|.+.++|...+.+|||+.| +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3456789999999999999999999995 5555555 444 3467999999999999999999999988 5778
Q ss_pred EEEEEchh
Q 008117 200 LMLKVDQA 207 (577)
Q Consensus 200 i~V~~a~~ 207 (577)
|.|.|+..
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 88877654
No 94
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.33 E-value=6e-07 Score=91.63 Aligned_cols=81 Identities=20% Similarity=0.372 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
....||||+||.++++.+|+..|.+||.|..+.++.|..+..++|||||.|.+.+++..++. ...+.|+|+.+.|+.|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 46789999999999999999999999999999999999999999999999999999999988 58999999999998877
Q ss_pred hh
Q 008117 207 AT 208 (577)
Q Consensus 207 ~~ 208 (577)
..
T Consensus 175 pk 176 (311)
T KOG4205|consen 175 PK 176 (311)
T ss_pred ch
Confidence 65
No 95
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.26 E-value=1.4e-07 Score=104.31 Aligned_cols=135 Identities=11% Similarity=0.109 Sum_probs=109.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
..+++||+||++.+.+.+|...|..+|.+..+.+......+..+|+|||.|..+..+.+||....+..+ |+.
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-gK~------- 737 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-GKI------- 737 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-hhh-------
Confidence 357899999999999999999999999998888877778999999999999999999999986444433 211
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHH
Q 008117 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEA 286 (577)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~A 286 (577)
.++|.|.+...+.+.++.+....+.......+....|+.+|.+||.|.+..++..+
T Consensus 738 ------------------------~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~ 793 (881)
T KOG0128|consen 738 ------------------------SVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRK 793 (881)
T ss_pred ------------------------hhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhh
Confidence 13888999999999999885534433344455678899999999999999999888
Q ss_pred HHHHhhh
Q 008117 287 LEKLTCM 293 (577)
Q Consensus 287 l~~l~~~ 293 (577)
+.+...+
T Consensus 794 ~~s~d~~ 800 (881)
T KOG0128|consen 794 VASVDVA 800 (881)
T ss_pred cccchhh
Confidence 7766554
No 96
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=9.9e-07 Score=93.70 Aligned_cols=72 Identities=22% Similarity=0.399 Sum_probs=65.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~ 201 (577)
.....+|||-|||..|++++|+.+|+.||.|..+.. |-...|.+||+|.+..+|..|++.|++..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 456789999999999999999999999999999765 445679999999999999999999999999999887
No 97
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.15 E-value=1.7e-05 Score=86.96 Aligned_cols=11 Identities=0% Similarity=-0.136 Sum_probs=4.6
Q ss_pred ccccccccccc
Q 008117 34 ECSLALFKVIC 44 (577)
Q Consensus 34 ~~~~~~~~~~~ 44 (577)
.+.+++||+..
T Consensus 524 ~~~iP~PP~~p 534 (1102)
T KOG1924|consen 524 DGGIPPPPPLP 534 (1102)
T ss_pred CCCCCCCCCCC
Confidence 34444444443
No 98
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.14 E-value=0.00012 Score=74.26 Aligned_cols=160 Identities=19% Similarity=0.180 Sum_probs=109.2
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008117 125 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~-~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~ 203 (577)
..+++.+.|.+|... ++.+.|..+|..||.|..|+++.-+ .|.|.|++.+....++|+..||+..+.|.+|.|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 456789999999874 5667899999999999999998764 3789999999999999999999999999999998
Q ss_pred EchhhHH-----H--------HHhhhhhhh-------hccc--cccccccccccCCCcccchhhhcCCC--CCC--cccc
Q 008117 204 VDQATRE-----Y--------LERYVDKKT-------ENTK--KLKETQDAGAGKEDESVQSVEKNEPT--KSP--ENLK 257 (577)
Q Consensus 204 ~a~~~~~-----~--------~~~~~~~k~-------~~~~--~~~~~~~~~v~nl~~~~~~~~l~e~~--ks~--~~~k 257 (577)
+++..-. | +..|...+. ...+ ...+++++-.-|.+..++++.|-.+. +.+ ...+
T Consensus 359 ~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svk 438 (494)
T KOG1456|consen 359 VSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVK 438 (494)
T ss_pred eccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEE
Confidence 7654211 1 111111110 0011 12334444455778888888887772 211 1111
Q ss_pred cCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 258 DNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 258 ~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+.. .+-+ ..-|.++|++..+|..||.++|..
T Consensus 439 vFp~---kser-SssGllEfe~~s~Aveal~~~NH~ 470 (494)
T KOG1456|consen 439 VFPL---KSER-SSSGLLEFENKSDAVEALMKLNHY 470 (494)
T ss_pred eecc---cccc-cccceeeeehHHHHHHHHHHhccc
Confidence 1111 1111 236789999999999999988765
No 99
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.09 E-value=2.8e-05 Score=65.80 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=67.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhh--cCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 008117 129 TKVYVGKIAPTADSDFVLSVLKV--CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELML 202 (577)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~--~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~----gr~i~V 202 (577)
+||.|.|||...|..+|..++.. .|....+.++.|..++-..|||||.|.++..|..-...++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998875 367777888888888999999999999999999999999999885 556677
Q ss_pred EEc
Q 008117 203 KVD 205 (577)
Q Consensus 203 ~~a 205 (577)
.+|
T Consensus 82 ~yA 84 (97)
T PF04059_consen 82 SYA 84 (97)
T ss_pred ehh
Confidence 666
No 100
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=0.00035 Score=74.16 Aligned_cols=161 Identities=18% Similarity=0.215 Sum_probs=98.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceE-EEEEeecC-CCCCcce---EEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK-SWKRAQYP-SNGTPKG---FGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~-~~~i~~~~-~tg~~kg---~gFV~f~~~~~A~~Al~~Lng~~i~gr~i 200 (577)
.-.+.||||+||++++++.|...|..||.+. .|-..... .--.++| |.|+.|.+..++...|.++.- +...+
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~ 333 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNY 333 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccce
Confidence 4478999999999999999999999999753 44321111 1112456 999999999988777655422 22222
Q ss_pred EEEEchhh--H--HHHHhhhhh----hhhccccccccccccccCCCcccchhhhcCCCC--CCcccccCCCCCCCCCCCC
Q 008117 201 MLKVDQAT--R--EYLERYVDK----KTENTKKLKETQDAGAGKEDESVQSVEKNEPTK--SPENLKDNETGNKESHDPT 270 (577)
Q Consensus 201 ~V~~a~~~--~--~~~~~~~~~----k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~k--s~~~~k~~~~~~~~~g~~k 270 (577)
.++++-.+ . ..+-+|.-. .........++.++|||.|+--++..+|..+.. ..++.=.+-|.+.+-.-.+
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 22211110 0 011111110 000122345566679999999999988876622 1122222333444666789
Q ss_pred ceEEEEeCCHHHHHHHHHH
Q 008117 271 NFGVVTEEDRKADQEALEK 289 (577)
Q Consensus 271 gfgfV~f~~~e~a~~Al~~ 289 (577)
|-|=|+|.+..+-.+||.+
T Consensus 414 GaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcceeeecccHHHHHHHhh
Confidence 9999999999998888764
No 101
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.89 E-value=0.0003 Score=74.88 Aligned_cols=59 Identities=15% Similarity=0.145 Sum_probs=42.0
Q ss_pred ccccCCCcccchhhhcCC-CC--CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 232 AGAGKEDESVQSVEKNEP-TK--SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~-~k--s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
+||..|...+-..+|..| ++ .++-.+ -..|..+.-.++||||++.+...|.++|..|+-
T Consensus 408 lWVSGLSstTRAtDLKnlFSKyGKVvGAK--VVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHr 469 (940)
T KOG4661|consen 408 LWVSGLSSTTRATDLKNLFSKYGKVVGAK--VVTNARSPGARCYGFVTMSTSAEATKCIEHLHR 469 (940)
T ss_pred eeeeccccchhhhHHHHHHHHhcceecee--eeecCCCCCcceeEEEEecchHHHHHHHHHhhh
Confidence 488888888888888877 44 111111 112344555789999999999999999988764
No 102
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.85 E-value=5.6e-05 Score=61.18 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=49.0
Q ss_pred ceEEEcCCCCCCCHHH----HHHHHhhcC-ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008117 129 TKVYVGKIAPTADSDF----VLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (577)
Q Consensus 129 ~tlfVgnLp~~~te~~----L~~~F~~~G-~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~ 203 (577)
..|||.|||.+..... |+.|+..|| .|.+|. .+.|+|-|.+.+.|.+|..-|+|-.+.|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5699999999988875 567777888 566652 2689999999999999999999999999999998
Q ss_pred EchhhH
Q 008117 204 VDQATR 209 (577)
Q Consensus 204 ~a~~~~ 209 (577)
|....+
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 875543
No 103
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.83 E-value=4.4e-05 Score=77.59 Aligned_cols=83 Identities=14% Similarity=0.235 Sum_probs=74.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceE--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~--------~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~ 196 (577)
.....+|||-+|+..++..+|..+|.+||.|. .+.|.+++.|+.+|+-|.|+|.++..|+.||.-+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34567899999999999999999999999885 4667788899999999999999999999999999999999
Q ss_pred CeEEEEEEchh
Q 008117 197 GQELMLKVDQA 207 (577)
Q Consensus 197 gr~i~V~~a~~ 207 (577)
|..|+|.++..
T Consensus 143 gn~ikvs~a~~ 153 (351)
T KOG1995|consen 143 GNTIKVSLAER 153 (351)
T ss_pred CCCchhhhhhh
Confidence 99988865543
No 104
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.82 E-value=7.2e-05 Score=71.09 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=56.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i 195 (577)
..+.||||.||.++||+++|+.+|+.|.....++|-. ....+.+||+|.+.+.|..|+..|.|..|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 4468999999999999999999999998777666632 23346899999999999999999999877
No 105
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.79 E-value=2e-05 Score=80.18 Aligned_cols=158 Identities=15% Similarity=0.073 Sum_probs=113.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-ceeCCeEEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK-FNIDGQELMLKV 204 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng-~~i~gr~i~V~~ 204 (577)
...+++|||++...+.+.++..+|..+|.+..+.+........+++|++|.|...+.+..||.. .+ +.+.+..+...+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~-s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEE-SGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHh-hhccccccccccCcc
Confidence 4578999999999999999999999999888887777667889999999999999999999985 55 466666666554
Q ss_pred chhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHH
Q 008117 205 DQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKAD 283 (577)
Q Consensus 205 a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~k-s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a 283 (577)
..... .+...+...........+.+|++++..++.++|...+. ...+....-.....+|.++|||||.|.....+
T Consensus 165 ~~~~~----~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~ 240 (285)
T KOG4210|consen 165 NTRRG----LRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSK 240 (285)
T ss_pred ccccc----ccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhH
Confidence 44432 11111111111222233345999999999999985533 22222222224478899999999999998887
Q ss_pred HHHHH
Q 008117 284 QEALE 288 (577)
Q Consensus 284 ~~Al~ 288 (577)
..++.
T Consensus 241 ~~~~~ 245 (285)
T KOG4210|consen 241 KLALN 245 (285)
T ss_pred HHHhh
Confidence 77654
No 106
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.75 E-value=0.00037 Score=75.92 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=66.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceE-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVK-SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~-~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
++.|-|.|+|++++-++|..||..|-.+- +|.+-++ ..|.+.|-|.|.|++.++|.+|...|++..|..+.|.|.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 45888999999999999999999998664 4444444 7899999999999999999999999999999999988753
No 107
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=1.7e-05 Score=76.35 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=50.4
Q ss_pred cccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~k-s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+.+-|.||+..+++.+|.+|+. ...+.+.---.++.+|.+||||||+|.++++|.+||..|++.
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~ 254 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGY 254 (270)
T ss_pred cceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCc
Confidence 34468899999999999999954 111221111124899999999999999999999999999985
No 108
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.71 E-value=0.00028 Score=76.80 Aligned_cols=158 Identities=7% Similarity=-0.174 Sum_probs=97.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~ 207 (577)
.+-+-+.+++++....+++.||...- |..+.|..+...+.-.|-++|.|....++..|+.. |...+-.+.|.|.-.-.
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGRN-AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hheeeecccccccccchhhhhcCccc-ccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCc
Confidence 34444568999999999999986532 44555555544444478999999999999999874 66666667766641111
Q ss_pred h--------HHHHHh---------hhh----hhhhccc---cccccccccccCCCcccchhhhcCCCC-CCcccccCCCC
Q 008117 208 T--------REYLER---------YVD----KKTENTK---KLKETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETG 262 (577)
Q Consensus 208 ~--------~~~~~~---------~~~----~k~~~~~---~~~~~~~~~v~nl~~~~~~~~l~e~~k-s~~~~k~~~~~ 262 (577)
. ...... ... +..--.+ --.-++++||..|+..++...+-.+++ +..+.+.....
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 0 000000 000 0000000 112355689999999999887766643 32222223334
Q ss_pred CCCCCCCCceEEEEeCCHHHHHHHH
Q 008117 263 NKESHDPTNFGVVTEEDRKADQEAL 287 (577)
Q Consensus 263 ~~~~g~~kgfgfV~f~~~e~a~~Al 287 (577)
.--+++..+.|||.|...+++..|+
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~ 493 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTAS 493 (944)
T ss_pred cCCcccccchhhheeccccccchhh
Confidence 4677888999999999866655543
No 109
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=97.70 E-value=2.3e-05 Score=71.89 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=47.9
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCC-CCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNE-TGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~-~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++.+|.+++..++.+.... ..+..+++++|||||+|.+.++|..|+..|++.
T Consensus 37 lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~ 99 (144)
T PLN03134 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99 (144)
T ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC
Confidence 59999999999999999855222111111 123568999999999999999999999988764
No 110
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.024 Score=62.98 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=4.6
Q ss_pred hHHHHhhcCCCC
Q 008117 293 MVEERLKTNPLP 304 (577)
Q Consensus 293 ~i~e~~~~~~~~ 304 (577)
+++....-.++|
T Consensus 257 liema~sGq~lP 268 (1118)
T KOG1029|consen 257 LIEMAKSGQPLP 268 (1118)
T ss_pred HHHHHhcCCCCC
Confidence 333333333433
No 111
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.58 E-value=9e-05 Score=75.43 Aligned_cols=165 Identities=15% Similarity=0.069 Sum_probs=109.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhc----CceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVC----GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~----G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~ 203 (577)
.-.|-+.+||+++++.++..||..- |.+..+-+++.+ .|++.|-|||.|...++|..||.. |...|+-+.|.|-
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 4457778999999999999999632 345566666653 799999999999999999999986 7777777776653
Q ss_pred Echhh--HHHHHhhhhhhhhc--------------cccccccccccccCCCcccchhhhcCCCC----CCcccccCCCCC
Q 008117 204 VDQAT--REYLERYVDKKTEN--------------TKKLKETQDAGAGKEDESVQSVEKNEPTK----SPENLKDNETGN 263 (577)
Q Consensus 204 ~a~~~--~~~~~~~~~~k~~~--------------~~~~~~~~~~~v~nl~~~~~~~~l~e~~k----s~~~~k~~~~~~ 263 (577)
-+.+. +..+..+...-.-. ......+.++-...|+.+++.+++..|.+ ++..- -+.-+.
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~-gVHmv~ 317 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQ-GVHMVL 317 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccc-eeEEEE
Confidence 22221 22222222110000 00122244455667899999888877744 11110 011123
Q ss_pred CCCCCCCceEEEEeCCHHHHHHHHHHHhhhHH
Q 008117 264 KESHDPTNFGVVTEEDRKADQEALEKLTCMVE 295 (577)
Q Consensus 264 ~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~i~ 295 (577)
+..|...|-+||.|.+.+.|..|..+.+..+.
T Consensus 318 N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~m 349 (508)
T KOG1365|consen 318 NGQGRPSGEAFIQMRNAERARAAAQKCHKKLM 349 (508)
T ss_pred cCCCCcChhhhhhhhhhHHHHHHHHHHHHhhc
Confidence 56788999999999999999998887776543
No 112
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.57 E-value=0.0021 Score=64.86 Aligned_cols=32 Identities=6% Similarity=-0.107 Sum_probs=23.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCceEEEEEee
Q 008117 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQ 162 (577)
Q Consensus 131 lfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~ 162 (577)
+.|+--.+.+++.++..++..--.|.+..|.+
T Consensus 348 r~~~p~~~plSeAEFEdiM~RNraiSSSAIsr 379 (498)
T KOG4849|consen 348 RHVNPQMFPLSEAEFEDIMTRNRAISSSAISR 379 (498)
T ss_pred ccCCCCCccchHHHHHHHHhhcchhhHHHHHH
Confidence 55666666789999999999888777765543
No 113
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=97.50 E-value=2.4e-05 Score=75.13 Aligned_cols=72 Identities=15% Similarity=0.059 Sum_probs=54.7
Q ss_pred ccccccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhhHHHHh
Q 008117 226 LKETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERL 298 (577)
Q Consensus 226 ~~~~~~~~v~nl~~~~~~~~l~e~~k-s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~i~e~~ 298 (577)
..+|+| ||++|+-.+..+.|+..+. ...+....-..++.+|++||||||+|.+.++|..|+.-.|-+|+-+.
T Consensus 10 T~~TKi-fVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~ 82 (247)
T KOG0149|consen 10 TTFTKI-FVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRK 82 (247)
T ss_pred ceEEEE-EEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccc
Confidence 345665 9999999999998887744 21222222224489999999999999999999999998888887663
No 114
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.50 E-value=0.00017 Score=72.57 Aligned_cols=88 Identities=22% Similarity=0.305 Sum_probs=73.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC--ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G--~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~ 203 (577)
.....+|||||-|.+|+++|.+.+...| .|..++++.++.+|.++|||+|..-+..++...+..|-...|+|+.-.|-
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 4467899999999999999999998888 67788889999999999999999999999999999999999999865553
Q ss_pred -EchhhHHHHH
Q 008117 204 -VDQATREYLE 213 (577)
Q Consensus 204 -~a~~~~~~~~ 213 (577)
+.+..+..++
T Consensus 158 ~~NK~~~ak~E 168 (498)
T KOG4849|consen 158 SYNKTNQAKLE 168 (498)
T ss_pred ccchhhHHHHH
Confidence 4444433333
No 115
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.47 E-value=2.8e-05 Score=61.11 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=46.2
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++.+|..++...+......-..+.++.++|||||.|.+.++|..|+..+++.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCC
Confidence 38999999999999998833222111111111367889999999999999999999998874
No 116
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.11 Score=58.12 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhhHHHHhhcCCCCC
Q 008117 280 RKADQEALEKLTCMVEERLKTNPLPP 305 (577)
Q Consensus 280 ~e~a~~Al~~l~~~i~e~~~~~~~~~ 305 (577)
.+.-.-|+..|.-...-......+|+
T Consensus 248 ~dEfilam~liema~sGq~lP~tlP~ 273 (1118)
T KOG1029|consen 248 ADEFILAMHLIEMAKSGQPLPKTLPP 273 (1118)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCh
Confidence 33444455544444444444444444
No 117
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.40 E-value=0.0001 Score=71.52 Aligned_cols=73 Identities=26% Similarity=0.287 Sum_probs=63.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCC--------CCcceE----EEEEeCCHHHHHHHHHHhCCce
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN--------GTPKGF----GFCEFESAEGVLRALRLLNKFN 194 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~t--------g~~kg~----gFV~f~~~~~A~~Al~~Lng~~ 194 (577)
....||+++||+.+...-|++||+.||.|-.|.+.....+ |....+ |.|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999988766544 333332 7899999999999999999999
Q ss_pred eCCeE
Q 008117 195 IDGQE 199 (577)
Q Consensus 195 i~gr~ 199 (577)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 118
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.33 E-value=0.00011 Score=74.96 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=72.1
Q ss_pred CCceEE-EcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 127 PQTKVY-VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 127 ~~~tlf-VgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
+..++| |++|++.++.++|..+|..||.|..+++..+..+|.++|||||.|.....+..++.. ....|.|+.+.|...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 344555 999999999999999999999999999999999999999999999999999999886 888999999998765
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 262 ~~ 263 (285)
T KOG4210|consen 262 EP 263 (285)
T ss_pred CC
Confidence 44
No 119
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.32 E-value=0.0011 Score=63.52 Aligned_cols=78 Identities=17% Similarity=0.300 Sum_probs=68.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEE
Q 008117 124 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELML 202 (577)
Q Consensus 124 ~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~-gr~i~V 202 (577)
..++..+||+.|||..++.+.|..+|..|+....++++... .+.|||+|.+...|..|...|.|..|. ...+.|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 35678899999999999999999999999999999987653 479999999999999999999999987 777777
Q ss_pred EEch
Q 008117 203 KVDQ 206 (577)
Q Consensus 203 ~~a~ 206 (577)
.++.
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 6653
No 120
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.00061 Score=72.37 Aligned_cols=64 Identities=20% Similarity=0.362 Sum_probs=60.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHh-hcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~-~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~ 189 (577)
.+.+|||||+||.-++..+|..||. -||.|..+.|-+|+.-+.++|-|-|+|.+..+..+||.+
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4579999999999999999999999 799999999999988999999999999999999999974
No 121
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0012 Score=70.53 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=63.9
Q ss_pred CCCceEEEcCCCCCCCH------HHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-Ce
Q 008117 126 KPQTKVYVGKIAPTADS------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQ 198 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te------~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~-gr 198 (577)
.-...|+|-|+|..-.. .-|..+|+++|+|+.+.++.+. .|+++||.|++|.+..+|..|+..|||+.|+ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 34577899999854332 2567899999999999998885 4559999999999999999999999999986 56
Q ss_pred EEEEEE
Q 008117 199 ELMLKV 204 (577)
Q Consensus 199 ~i~V~~ 204 (577)
.+.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 777763
No 122
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=97.20 E-value=0.00061 Score=67.58 Aligned_cols=79 Identities=6% Similarity=0.041 Sum_probs=54.0
Q ss_pred HHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHH
Q 008117 212 LERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALE 288 (577)
Q Consensus 212 ~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~k---s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~ 288 (577)
+..|............. .++||+-|+..++++.|+..+. .|..+..+ .++.+|+++|||||+|++..+...|-.
T Consensus 85 l~~wdP~~dp~a~gDPy-~TLFv~RLnydT~EskLrreF~~YG~IkrirlV--~d~vTgkskGYAFIeye~erdm~~AYK 161 (335)
T KOG0113|consen 85 LKLWDPNNDPNAIGDPY-KTLFVARLNYDTSESKLRREFEKYGPIKRIRLV--RDKVTGKSKGYAFIEYEHERDMKAAYK 161 (335)
T ss_pred HHhcCCCCCCcccCCcc-ceeeeeeccccccHHHHHHHHHhcCcceeEEEe--eecccCCccceEEEEeccHHHHHHHHH
Confidence 34444444433334333 3359999999999999876633 23222222 237899999999999999999999988
Q ss_pred HHhhh
Q 008117 289 KLTCM 293 (577)
Q Consensus 289 ~l~~~ 293 (577)
...++
T Consensus 162 ~adG~ 166 (335)
T KOG0113|consen 162 DADGI 166 (335)
T ss_pred hccCc
Confidence 77765
No 123
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.16 E-value=0.00029 Score=68.05 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=62.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V 202 (577)
....+.|+|-||+..+...+|..+|..+|.+....+ ..+++||.|....+|..||..|+|..|.|+.|.|
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 456788999999999999999999999999844433 2369999999999999999999999999999998
No 124
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.05 E-value=0.001 Score=57.45 Aligned_cols=83 Identities=19% Similarity=0.333 Sum_probs=49.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC-----CceeCCeEEEEE
Q 008117 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN-----KFNIDGQELMLK 203 (577)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Ln-----g~~i~gr~i~V~ 203 (577)
+.|+|.+++..++-++|+.+|+.||.|..|.+... -..|||-|.+.+.|..|+..+. +..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57899999999999999999999999999988553 2489999999999999997663 346666666665
Q ss_pred Ec--hhhHHHHHhhhh
Q 008117 204 VD--QATREYLERYVD 217 (577)
Q Consensus 204 ~a--~~~~~~~~~~~~ 217 (577)
+- ..-..|+.....
T Consensus 76 vLeGeeE~~Yw~ki~e 91 (105)
T PF08777_consen 76 VLEGEEEEEYWKKIIE 91 (105)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHH
Confidence 42 334455555444
No 125
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.01 E-value=0.0016 Score=65.46 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=61.6
Q ss_pred CceEEEcCCCCCCCHHH----H--HHHHhhcCceEEEEEeecCCC-CCcce-E-EEEEeCCHHHHHHHHHHhCCceeCCe
Q 008117 128 QTKVYVGKIAPTADSDF----V--LSVLKVCGTVKSWKRAQYPSN-GTPKG-F-GFCEFESAEGVLRALRLLNKFNIDGQ 198 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~----L--~~~F~~~G~v~~~~i~~~~~t-g~~kg-~-gFV~f~~~~~A~~Al~~Lng~~i~gr 198 (577)
..-+||-+|++.+..++ | .++|.+||.|..+.|-....+ ....+ + .||+|.+.++|.+||..++|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999999887776 2 479999999998876543211 11122 3 39999999999999999999999999
Q ss_pred EEEEEEchh
Q 008117 199 ELMLKVDQA 207 (577)
Q Consensus 199 ~i~V~~a~~ 207 (577)
.|+..+...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999876643
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.89 E-value=0.00035 Score=78.32 Aligned_cols=145 Identities=11% Similarity=0.060 Sum_probs=103.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
..+.|||+|||...+++.+|+..|..+|.|..|.|-+.+ -+....||||.|.+...+-.|+..+.+..|..-.+.+.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 457899999999999999999999999999999886653 3455579999999999999999989998887666666544
Q ss_pred hhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008117 206 QATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQE 285 (577)
Q Consensus 206 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~ 285 (577)
+. ....++-.+++.|........+...+.-++.++.. +-..| .-|++|.|++...+..
T Consensus 449 ~~-----------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~I---dy~hg--q~yayi~yes~~~aq~ 506 (975)
T KOG0112|consen 449 QP-----------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRII---DYRHG--QPYAYIQYESPPAAQA 506 (975)
T ss_pred cc-----------------ccccceeeccCCCCCCChHHHHHHHhhccCcceee---ecccC--CcceeeecccCccchh
Confidence 32 11122234777777666665554333311211110 01122 3499999999999999
Q ss_pred HHHHHhhh
Q 008117 286 ALEKLTCM 293 (577)
Q Consensus 286 Al~~l~~~ 293 (577)
|+..+.+.
T Consensus 507 a~~~~rga 514 (975)
T KOG0112|consen 507 ATHDMRGA 514 (975)
T ss_pred hHHHHhcC
Confidence 98877654
No 127
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=96.87 E-value=0.0006 Score=53.86 Aligned_cols=59 Identities=12% Similarity=0.033 Sum_probs=41.7
Q ss_pred cccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHh
Q 008117 233 GAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLT 291 (577)
Q Consensus 233 ~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~ 291 (577)
+|+|||..++..+|.+++...+......-.....|..+|+|||+|.+.++|..|+..++
T Consensus 2 ~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 2 YISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp EEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC
Confidence 78999999999999988552221111111112237889999999999999999999876
No 128
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.86 E-value=0.001 Score=69.09 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=64.5
Q ss_pred CCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeec---C--CCCCc--------ceEEEEEeCCHH
Q 008117 115 PVPLPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY---P--SNGTP--------KGFGFCEFESAE 181 (577)
Q Consensus 115 p~~~~~~~~~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~---~--~tg~~--------kg~gFV~f~~~~ 181 (577)
-.++|......-+.++|.+.|||.+-.-+-|..||+.||.|..|+|+.. + ..|.+ +-||||+|...+
T Consensus 218 isPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~ 297 (484)
T KOG1855|consen 218 ISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVE 297 (484)
T ss_pred cCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhH
Confidence 3444555555668999999999999999999999999999999999876 3 22222 457999999999
Q ss_pred HHHHHHHHhCCcee
Q 008117 182 GVLRALRLLNKFNI 195 (577)
Q Consensus 182 ~A~~Al~~Lng~~i 195 (577)
.|.+|...|+....
T Consensus 298 ~A~KA~e~~~~e~~ 311 (484)
T KOG1855|consen 298 AARKARELLNPEQN 311 (484)
T ss_pred HHHHHHHhhchhhh
Confidence 99999998765443
No 129
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=96.86 E-value=0.00049 Score=69.10 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=46.5
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhhHHH
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEE 296 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~i~e 296 (577)
+.++|.||++.+-+-+|...+..++.+-+++...++ --|||||||+|++.++|++|..+||+-+.+
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-RGSKGFGFVTmen~~dadRARa~LHgt~VE 162 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-RGSKGFGFVTMENPADADRARAELHGTVVE 162 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-CCCCccceEEecChhhHHHHHHHhhcceee
Confidence 346999999999999988773311111111111122 347999999999999999999999986443
No 130
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.80 E-value=0.003 Score=66.86 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=63.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~-~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~ 203 (577)
....|-+.+||+.||+.+|.+||+..-.|.. +.++.+ .-+++.|-|||.|++.+.|+.||.. |...|+.+-|.|-
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF 177 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVF 177 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEee
Confidence 4667889999999999999999998765544 444555 4678899999999999999999985 8888998998885
No 131
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.76 E-value=0.0077 Score=61.73 Aligned_cols=169 Identities=14% Similarity=0.051 Sum_probs=110.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
....|-..+||+..++.+|-.||....-......+.....|.-.|++.|.|.+.+.-..|+.. |...++++.|.|.-+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccC
Confidence 344556679999999999999998654332222222224677779999999999999999985 8888899999985433
Q ss_pred hhHHHHHhhhhhhhhcccc-ccc-cccccccCCCcccchhhhcCCCC---CCcccccCCC-CCCCCCCCCceEEEEeCCH
Q 008117 207 ATREYLERYVDKKTENTKK-LKE-TQDAGAGKEDESVQSVEKNEPTK---SPENLKDNET-GNKESHDPTNFGVVTEEDR 280 (577)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~-~~~-~~~~~v~nl~~~~~~~~l~e~~k---s~~~~k~~~~-~~~~~g~~kgfgfV~f~~~ 280 (577)
.. .++.-..-...+...- .+. .-++-...|+...++.++.+|+. -+....++-. +...+|+..|-+||.|...
T Consensus 138 ge-~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 138 GE-EFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE 216 (508)
T ss_pred ch-hheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCH
Confidence 21 1110000011111110 111 12245568999999999998853 2221221111 3355789999999999999
Q ss_pred HHHHHHHHHHhhhHHHH
Q 008117 281 KADQEALEKLTCMVEER 297 (577)
Q Consensus 281 e~a~~Al~~l~~~i~e~ 297 (577)
++|..||.+-.+.|..+
T Consensus 217 e~aq~aL~khrq~iGqR 233 (508)
T KOG1365|consen 217 EDAQFALRKHRQNIGQR 233 (508)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 99999999988887655
No 132
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.65 E-value=0.0062 Score=62.25 Aligned_cols=143 Identities=15% Similarity=0.110 Sum_probs=98.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH--hCCceeCCeEEEEEE
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL--LNKFNIDGQELMLKV 204 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~--Lng~~i~gr~i~V~~ 204 (577)
++..|+|.+|-..+++.+|.+.++.||.|..+.++.. +.-+.|+|.+.+.|..|+.. -+...|.|+.-.+++
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 4567999999999999999999999999999987655 35899999999999999852 255667788777766
Q ss_pred chhhHHHHHhhhhhhhhcccccccccc--ccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEE
Q 008117 205 DQATREYLERYVDKKTENTKKLKETQD--AGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVT 276 (577)
Q Consensus 205 a~~~~~~~~~~~~~k~~~~~~~~~~~~--~~v~nl~~~~~~~~l~e~~k------s~~~~k~~~~~~~~~g~~kgfgfV~ 276 (577)
+.+.. +.. .. ........+ .-|-|-...++-+.|-.+.- -+++.+ .+| -.+.|+
T Consensus 104 Stsq~--i~R----~g--~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk-------kng---VQAmVE 165 (494)
T KOG1456|consen 104 STSQC--IER----PG--DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK-------KNG---VQAMVE 165 (494)
T ss_pred chhhh--hcc----CC--CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe-------ccc---eeeEEe
Confidence 64321 100 00 111222223 23445556666666666632 122222 122 368999
Q ss_pred eCCHHHHHHHHHHHhhh
Q 008117 277 EEDRKADQEALEKLTCM 293 (577)
Q Consensus 277 f~~~e~a~~Al~~l~~~ 293 (577)
|++.+.|.+|...||+.
T Consensus 166 Fdsv~~AqrAk~alNGA 182 (494)
T KOG1456|consen 166 FDSVEVAQRAKAALNGA 182 (494)
T ss_pred echhHHHHHHHhhcccc
Confidence 99999999999999975
No 133
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.65 E-value=0.0038 Score=64.50 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=66.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-ELMLKV 204 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr-~i~V~~ 204 (577)
+++.+|+.+|||.++++++|+.+|..-|..+..... -++.+.++++.+.+.+.|..|+..||.+.+++. .|+|.|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 567899999999999999999999999876554432 234567999999999999999999999999855 899998
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 865
No 134
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.65 E-value=0.0083 Score=54.29 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=53.0
Q ss_pred CCCceEEEcCCC-----C-CCCH---HHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008117 126 KPQTKVYVGKIA-----P-TADS---DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (577)
Q Consensus 126 ~~~~tlfVgnLp-----~-~~te---~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~ 196 (577)
++..||.|.-+. . .+.+ .+|...|..||.|.-++++-+ .-+|+|.+-.+|.+|+. |+|..|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 345677776555 1 2332 277788999999998888654 68999999999999999 7999999
Q ss_pred CeEEEEEEc
Q 008117 197 GQELMLKVD 205 (577)
Q Consensus 197 gr~i~V~~a 205 (577)
|+.|.|.+-
T Consensus 96 g~~l~i~LK 104 (146)
T PF08952_consen 96 GRTLKIRLK 104 (146)
T ss_dssp TEEEEEEE-
T ss_pred CEEEEEEeC
Confidence 999999754
No 135
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.63 E-value=0.0098 Score=50.73 Aligned_cols=78 Identities=19% Similarity=0.141 Sum_probs=52.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecC-------CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe-E
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-------SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-E 199 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~-------~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr-~ 199 (577)
.+.|.|-+.|+. .-..|...|++||.|+...-+... .......|-.|.|.++.+|.+||.. ||..|+|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 456888888887 556788899999999877511110 0012236999999999999999995 99999885 5
Q ss_pred EEEEEchh
Q 008117 200 LMLKVDQA 207 (577)
Q Consensus 200 i~V~~a~~ 207 (577)
+-|.++..
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 55766644
No 136
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=96.61 E-value=0.0022 Score=60.72 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=45.6
Q ss_pred cccccCCCcccchhhhcCCCC-CCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhhH
Q 008117 231 DAGAGKEDESVQSVEKNEPTK-SPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~k-s~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~i 294 (577)
+.++..++.-+.+.++..++. ..+....... -|..||.|||||||+|++.+.|.-|-+.||+.|
T Consensus 51 ~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYL 116 (214)
T KOG4208|consen 51 VVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYL 116 (214)
T ss_pred ceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhh
Confidence 346666777676666655533 2222222222 568999999999999999999999999999864
No 137
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.56 E-value=0.00026 Score=65.36 Aligned_cols=63 Identities=13% Similarity=0.044 Sum_probs=47.6
Q ss_pred cccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~-~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
-.||++|+..+++.++.-++...+ ++...-.-++.||+|+||+|+.|++..+..-|+.-||++
T Consensus 37 ~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGi 100 (219)
T KOG0126|consen 37 YIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGI 100 (219)
T ss_pred EEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCc
Confidence 369999999999999877644111 111111123899999999999999999999998888886
No 138
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.003 Score=63.97 Aligned_cols=65 Identities=11% Similarity=0.078 Sum_probs=53.4
Q ss_pred cccccccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhhH
Q 008117 225 KLKETQDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (577)
Q Consensus 225 ~~~~~~~~~v~nl~~~~~~~~l~e~~k------s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~i 294 (577)
.+.+.|++||-.|.+.+++++|.-++. ++.+++ + ..+|.+-.|+||+|++.++.++|.-+|.+.|
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIR---D--~ktgdsLqyaFiEFen~escE~AyFKMdNvL 305 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIR---D--RKTGDSLQYAFIEFENKESCEQAYFKMDNVL 305 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEe---c--ccccchhheeeeeecchhhHHHHHhhhccee
Confidence 466788999999999999999987743 444443 2 6789999999999999999999999987653
No 139
>PLN03120 nucleic acid binding protein; Provisional
Probab=96.44 E-value=0.0016 Score=64.63 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=42.0
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
.+||+||+..+++.+|.+++..++.+..... ...+..+|||||+|.+.+++..||. |++
T Consensus 6 tVfVgNLs~~tTE~dLrefFS~~G~I~~V~I--~~d~~~~GfAFVtF~d~eaAe~All-LnG 64 (260)
T PLN03120 6 TVKVSNVSLKATERDIKEFFSFSGDIEYVEM--QSENERSQIAYVTFKDPQGAETALL-LSG 64 (260)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE--eecCCCCCEEEEEeCcHHHHHHHHH-hcC
Confidence 3599999999999999999553332221111 1112357999999999999999996 544
No 140
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.35 E-value=0.012 Score=54.76 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=58.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~ 196 (577)
..+...|.|.+||++.++.+|+.++...|.|....+..| |+|.|+|...++..-||..|+...+.
T Consensus 112 rrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 112 RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 345688999999999999999999999999999999888 69999999999999999999876653
No 141
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=96.33 E-value=0.0014 Score=60.38 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=43.1
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhhH
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~i 294 (577)
+||+||...+++.+|+.++...+.+..++. . -..-|||||+|++..+|+.|+..|++..
T Consensus 13 VYVGnL~~~a~k~eLE~~F~~yG~lrsvWv--A--rnPPGfAFVEFed~RDA~DAvr~LDG~~ 71 (195)
T KOG0107|consen 13 VYVGNLGSRATKRELERAFSKYGPLRSVWV--A--RNPPGFAFVEFEDPRDAEDAVRYLDGKD 71 (195)
T ss_pred EEeccCCCCcchHHHHHHHHhcCcceeEEE--e--ecCCCceEEeccCcccHHHHHhhcCCcc
Confidence 499999999999999877442221111111 0 1457899999999999999999998753
No 142
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=96.32 E-value=0.0028 Score=67.95 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=49.2
Q ss_pred cccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~k---s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..||+|++..++++.|..++. .+...+.. .+..+|+++|||||+|.+.+.+..|+..||+.
T Consensus 20 ~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v--~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~ 83 (435)
T KOG0108|consen 20 SVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLV--YDRETGKPKGFGFCEFTDEETAERAIRNLNGA 83 (435)
T ss_pred ceEecCCCCcccHHHHHHHHhccCccceeeec--ccccCCCcCceeeEecCchhhHHHHHHhcCCc
Confidence 359999999999999988833 22222222 23789999999999999999999999999965
No 143
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.29 E-value=0.012 Score=59.91 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=62.0
Q ss_pred CCCceEEEcCCCC----CCCH-------HHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 008117 126 KPQTKVYVGKIAP----TADS-------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 194 (577)
Q Consensus 126 ~~~~tlfVgnLp~----~~te-------~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~ 194 (577)
...++|.|.||=. ..+. ++|..-+.+||.|.+|.|.- ..+.|.+-|.|.+.+.|..||..|+|..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3468899988732 3332 35566688999999998753 3567999999999999999999999999
Q ss_pred eCCeEEEEEEchh
Q 008117 195 IDGQELMLKVDQA 207 (577)
Q Consensus 195 i~gr~i~V~~a~~ 207 (577)
|+|+.|...+...
T Consensus 339 fdgRql~A~i~DG 351 (382)
T KOG1548|consen 339 FDGRQLTASIWDG 351 (382)
T ss_pred ecceEEEEEEeCC
Confidence 9999999875544
No 144
>PLN03213 repressor of silencing 3; Provisional
Probab=96.21 E-value=0.0023 Score=67.34 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=44.3
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCH--HHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDR--KADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~--e~a~~Al~~l~~~ 293 (577)
+|||||...+++++|..++..++.+...... ..+| +|||||+|... .++.+||..|++.
T Consensus 13 IYVGNLSydVTEDDLravFSeFGsVkdVEIp-RETG--RGFAFVEMssdddaEeeKAISaLNGA 73 (759)
T PLN03213 13 LHVGGLGESVGRDDLLKIFSPMGTVDAVEFV-RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGC 73 (759)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-cccC--CceEEEEecCCcHHHHHHHHHHhcCC
Confidence 5999999999999999885533333222222 3456 99999999987 6789999988764
No 145
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.19 E-value=0.0039 Score=52.58 Aligned_cols=63 Identities=11% Similarity=0.016 Sum_probs=48.6
Q ss_pred cccccccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhhH
Q 008117 227 KETQDAGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (577)
Q Consensus 227 ~~~~~~~v~nl~~~~~~~~l~e~~k---s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~i 294 (577)
..+.++||.|||..++.++.-++++ .+.-.+.+. +...+|-|||.|++..+|.+|++.|++..
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~-----~k~TrGTAFVVYedi~dAk~A~dhlsg~n 81 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN-----TKETRGTAFVVYEDIFDAKKACDHLSGYN 81 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecC-----ccCcCceEEEEehHhhhHHHHHHHhcccc
Confidence 3466789999999999999888844 233333322 23458999999999999999999998763
No 146
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.15 E-value=0.012 Score=44.03 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=41.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 008117 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL 187 (577)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al 187 (577)
+.|-|.+.++...+.-| .+|..||.|..+.+.. ...+.||.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 56788898877665544 5888999999988752 2359999999999999985
No 147
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=96.06 E-value=0.0036 Score=55.21 Aligned_cols=65 Identities=12% Similarity=0.051 Sum_probs=49.8
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.-|+||.+++..++++++..++...+-++.... .+-.+|-.|||+.|+|++.+.|..|+..+|+.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~ 137 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGA 137 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccch
Confidence 345689999999999998877553332222222 34678999999999999999999999999964
No 148
>smart00361 RRM_1 RNA recognition motif.
Probab=95.99 E-value=0.0085 Score=47.59 Aligned_cols=27 Identities=15% Similarity=0.051 Sum_probs=25.3
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 267 HDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 267 g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+.++|||||.|.+.++|..|+..|++.
T Consensus 34 ~~~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 34 NHKRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred CCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 889999999999999999999998874
No 149
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.0045 Score=58.90 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=46.5
Q ss_pred cccccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~k---s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
.+++||+.|...+++..|...+- .+....-. .+-.+.+++|||||+|+..++|..||.-||+
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiP--lDyesqkHRgFgFVefe~aEDAaaAiDNMne 74 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIP--LDYESQKHRGFGFVEFEEAEDAAAAIDNMNE 74 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccc--cchhcccccceeEEEeeccchhHHHhhcCch
Confidence 34579999999999998876522 22222211 3368899999999999999999999887765
No 150
>smart00362 RRM_2 RNA recognition motif.
Probab=95.89 E-value=0.0061 Score=47.03 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=41.5
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
.+|.||+..++..++..++...+......-.... +.++|+|||+|.+...|..|+..+++
T Consensus 2 v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred EEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCC
Confidence 3788999999998888773321111111111112 67889999999999999999987775
No 151
>PLN03121 nucleic acid binding protein; Provisional
Probab=95.84 E-value=0.0048 Score=60.40 Aligned_cols=65 Identities=12% Similarity=-0.019 Sum_probs=45.5
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhhHHHH
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEER 297 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~i~e~ 297 (577)
.+||+||+..+++.+|++|+..++.+..... ...+..++||||+|.+.+++..|+..-...|...
T Consensus 7 TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I--~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~ 71 (243)
T PLN03121 7 TAEVTNLSPKATEKDVYDFFSHCGAIEHVEI--IRSGEYACTAYVTFKDAYALETAVLLSGATIVDQ 71 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHhcCCeEEEEE--ecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCc
Confidence 3599999999999999999553332222222 1124567899999999999999985444445444
No 152
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=95.76 E-value=0.0061 Score=53.41 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=49.6
Q ss_pred cccccccCCCcccchhhhcCC-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~-~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..++++.+-+| ++...+.+...-.+..+-.+=||+||+|-+.++|+.|+.=|++.
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgt 101 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGT 101 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccC
Confidence 344699999999999999999 44222333333344566667899999999999999999988775
No 153
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=95.75 E-value=0.0047 Score=58.41 Aligned_cols=65 Identities=9% Similarity=0.060 Sum_probs=48.3
Q ss_pred ccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhhHHH
Q 008117 232 AGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEE 296 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~k-s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~i~e 296 (577)
+.|.||..-++.++|..++. -..++...--.+.-++.++|||||.|.+..+|+.|++.|.+.+.+
T Consensus 16 LkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld 81 (256)
T KOG4207|consen 16 LKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD 81 (256)
T ss_pred EEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec
Confidence 46789999999999987744 111111111133678899999999999999999999999887554
No 154
>smart00360 RRM RNA recognition motif.
Probab=95.75 E-value=0.0068 Score=46.53 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=39.6
Q ss_pred ccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 234 AGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 234 v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
|+||+..++..++..++...+......- ....++.++|||||.|.+.++|..|+..+++
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~ 60 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNG 60 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCC
Confidence 4677888888888777331111110000 1133688899999999999999999887763
No 155
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=95.60 E-value=0.007 Score=60.01 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=48.0
Q ss_pred ccccccCCCcccchhhhcCCCCCCccc-ccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENL-KDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~-k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
..+||+||+..+++++|..+++..+.. ......+..+|.++|||||.|.+.+++..|+..+++
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~ 179 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNG 179 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCC
Confidence 446999999999999999885522211 111112237899999999999999999999999983
No 156
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.57 E-value=0.0047 Score=69.30 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=70.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~ 207 (577)
...|||.|+|+..|.++|+.+|.++|.+.++.+++.+ .|+++|.+||.|.+..++..++...++..+.-..+.|.++..
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 5679999999999999999999999999999988884 899999999999999999999988887777777777765544
No 157
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=95.38 E-value=0.056 Score=60.42 Aligned_cols=11 Identities=36% Similarity=0.286 Sum_probs=4.6
Q ss_pred HHhhhHHHHhh
Q 008117 289 KLTCMVEERLK 299 (577)
Q Consensus 289 ~l~~~i~e~~~ 299 (577)
++..+++..+.
T Consensus 562 ~lr~VleiILA 572 (830)
T KOG1923|consen 562 KLRPVLEIILA 572 (830)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 158
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.17 E-value=0.058 Score=53.70 Aligned_cols=63 Identities=22% Similarity=0.133 Sum_probs=50.4
Q ss_pred HHHHHHHhhcCceEEEEEeecCCCCCc-ceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 143 DFVLSVLKVCGTVKSWKRAQYPSNGTP-KGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 143 ~~L~~~F~~~G~v~~~~i~~~~~tg~~-kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
+++..-+.+||.|..|.|.-.+.-... .---||+|...++|.+|+..|||..|+|+.+...|.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 366788889999999988776422222 234799999999999999999999999999887654
No 159
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.08 E-value=0.023 Score=59.02 Aligned_cols=73 Identities=16% Similarity=0.271 Sum_probs=57.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceEE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc-eeCCeEEEEEEch
Q 008117 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF-NIDGQELMLKVDQ 206 (577)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~-~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~-~i~gr~i~V~~a~ 206 (577)
..||+|||.+.++..+|..+|...-...+ -.++. .||+||.+.+...|.+|+..|+|. .+.|+++.|..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 46899999999999999999985421111 12222 289999999999999999999986 5789999997665
Q ss_pred hh
Q 008117 207 AT 208 (577)
Q Consensus 207 ~~ 208 (577)
..
T Consensus 75 ~k 76 (584)
T KOG2193|consen 75 PK 76 (584)
T ss_pred hH
Confidence 43
No 160
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.00 E-value=0.05 Score=61.69 Aligned_cols=79 Identities=14% Similarity=0.286 Sum_probs=68.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--eEEE
Q 008117 124 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELM 201 (577)
Q Consensus 124 ~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~g--r~i~ 201 (577)
.....+.+|||+|..++....|...|..||.|..|.+-. | ..|+||.|.+...++.|+..|-|..|+| +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----g--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----G--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----C--CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 345678999999999999999999999999998876532 2 3599999999999999999999999985 6799
Q ss_pred EEEchhh
Q 008117 202 LKVDQAT 208 (577)
Q Consensus 202 V~~a~~~ 208 (577)
|.|+...
T Consensus 525 vdla~~~ 531 (975)
T KOG0112|consen 525 VDLASPP 531 (975)
T ss_pred cccccCC
Confidence 9887653
No 161
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.71 E-value=0.034 Score=54.43 Aligned_cols=62 Identities=19% Similarity=0.304 Sum_probs=56.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 008117 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (577)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Ln 191 (577)
..|||.||+..++.+.|..-|+.||.|....++.| ..+++.+-++|.|...-.|..|+..++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 78999999999999999999999999988777766 578999999999999999999998773
No 162
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.57 E-value=0.039 Score=59.74 Aligned_cols=63 Identities=8% Similarity=-0.044 Sum_probs=49.1
Q ss_pred ccccccccccCCCcccchhhhcCC-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 226 LKETQDAGAGKEDESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 226 ~~~~~~~~v~nl~~~~~~~~l~e~-~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
....|+++|.||---+|..+|.+| +..++++.+. ...+.|.-+||.|.+.+.|...+..||++
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-----WmDkIKShCyV~yss~eEA~atr~AlhnV 504 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-----WMDKIKSHCYVSYSSVEEAAATREALHNV 504 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-----HHHHhhcceeEecccHHHHHHHHHHHhcc
Confidence 456788899999999999999988 4444444322 33456778999999999999999999876
No 163
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.33 E-value=0.17 Score=45.36 Aligned_cols=75 Identities=17% Similarity=0.237 Sum_probs=57.2
Q ss_pred CCCCceEEEcCCCCCCCH----HHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 008117 125 EKPQTKVYVGKIAPTADS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te----~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i 200 (577)
+++..||.|.=|..++.. ..+...++.||+|.+|.+. |+ .-|.|.|.+..+|..|+.+++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Gr--qsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GR--QSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CC--ceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 556788888866655543 3566677899999999763 32 4799999999999999999876 5667888
Q ss_pred EEEEchh
Q 008117 201 MLKVDQA 207 (577)
Q Consensus 201 ~V~~a~~ 207 (577)
.+.|.+.
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 8877543
No 164
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=94.26 E-value=0.033 Score=43.03 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=41.2
Q ss_pred cccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 233 GAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 233 ~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+|.+|+..++..++..++...+......-.....+..+|+|||.|.+.++|..|+..+++.
T Consensus 3 ~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 3 FVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred EEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 7888999998888877733111111000111222366899999999999999999888765
No 165
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.09 E-value=0.027 Score=55.18 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=51.3
Q ss_pred HHHHHHh-hcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008117 144 FVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (577)
Q Consensus 144 ~L~~~F~-~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~ 207 (577)
+|...|. +||.|..+.|..+ ..-...|-.||.|...++|.+|+..||+-.|.|++|...+..-
T Consensus 84 d~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 3444444 9999999977665 3445578899999999999999999999999999999876543
No 166
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.61 E-value=2.5 Score=42.73 Aligned_cols=62 Identities=24% Similarity=0.275 Sum_probs=47.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 008117 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 199 (577)
Q Consensus 130 tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~ 199 (577)
=|-|-++++.-. ..|..+|.+||.|+..... ..-.|-+|-|.+..+|.+||.. ||..|+|..
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~v 260 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDV 260 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccce
Confidence 344556776533 5677899999999887543 2235999999999999999995 999998754
No 167
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.40 E-value=0.38 Score=37.20 Aligned_cols=55 Identities=15% Similarity=0.039 Sum_probs=45.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhc---CceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVC---GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~---G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~L 190 (577)
...|+|.|+. .++..+|+.+|..| .....+.++-|. -|-|.|.+...|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4579999986 68889999999998 235678888773 5779999999999999764
No 168
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=93.23 E-value=0.43 Score=53.62 Aligned_cols=7 Identities=29% Similarity=0.819 Sum_probs=2.7
Q ss_pred ccccccc
Q 008117 9 VGRLQIL 15 (577)
Q Consensus 9 ~~~~~~~ 15 (577)
+|-++..
T Consensus 244 i~emq~~ 250 (830)
T KOG1923|consen 244 IGEMQLA 250 (830)
T ss_pred ccccccc
Confidence 3334433
No 169
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.20 E-value=0.033 Score=56.76 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=60.4
Q ss_pred CceEEEcCCCCCCCHHHHH---HHHhhcCceEEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 008117 128 QTKVYVGKIAPTADSDFVL---SVLKVCGTVKSWKRAQYPS----NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~---~~F~~~G~v~~~~i~~~~~----tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i 200 (577)
..-+||-+|+..+-.+.+. ..|..||.|..+.+..++. .|.+ +-+||+|...++|..||...+|+.++|+.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3568888999877666543 6889999999998877652 2222 338999999999999999999999999987
Q ss_pred EEEEch
Q 008117 201 MLKVDQ 206 (577)
Q Consensus 201 ~V~~a~ 206 (577)
+..+..
T Consensus 156 ka~~gt 161 (327)
T KOG2068|consen 156 KASLGT 161 (327)
T ss_pred HHhhCC
Confidence 665443
No 170
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.17 E-value=0.31 Score=55.21 Aligned_cols=76 Identities=18% Similarity=0.150 Sum_probs=63.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--CCeEEEEEEc
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI--DGQELMLKVD 205 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i--~gr~i~V~~a 205 (577)
....++.|.+-+.+-..|..+|+.||.|.+....++ ...+.|+|.+.+.|..|+.+|+|..+ .|-+.+|.++
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 345667777888899999999999999998876665 25899999999999999999999876 4888899888
Q ss_pred hhhH
Q 008117 206 QATR 209 (577)
Q Consensus 206 ~~~~ 209 (577)
....
T Consensus 372 k~~~ 375 (1007)
T KOG4574|consen 372 KTLP 375 (1007)
T ss_pred cccc
Confidence 6643
No 171
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.66 E-value=0.55 Score=38.38 Aligned_cols=56 Identities=7% Similarity=0.071 Sum_probs=41.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK 192 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng 192 (577)
....||+ .|..+...+|.++|+.||.|. |..+.+ .-|||.....+.|..++..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 3445555 999999999999999999864 444555 3799999999999999988763
No 172
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.10 E-value=0.5 Score=45.03 Aligned_cols=62 Identities=19% Similarity=0.151 Sum_probs=45.9
Q ss_pred CHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEEchhh
Q 008117 141 DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLKVDQAT 208 (577)
Q Consensus 141 te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Ln--g~~i~gr~i~V~~a~~~ 208 (577)
....|+.+|..|+.+..+.+... .+=..|.|.+.+.|..|...|+ +..|.|..|+|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 34789999999999998876543 2457899999999999999999 99999999999888443
No 173
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.08 E-value=2.2 Score=37.14 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=48.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcC-ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G-~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~ 196 (577)
...+.+...|+.++.++|..+.+.+- .|..++|+.+. ...+..+.+.|.+..+|..-...+||..++
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34444455555666667766666655 56677888762 235566889999999999999999999885
No 174
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=90.82 E-value=1.2 Score=46.64 Aligned_cols=10 Identities=0% Similarity=0.242 Sum_probs=4.5
Q ss_pred HHHHHHHhhh
Q 008117 284 QEALEKLTCM 293 (577)
Q Consensus 284 ~~Al~~l~~~ 293 (577)
...|+.|.++
T Consensus 477 ~~FMkEM~gL 486 (487)
T KOG4672|consen 477 NAFMKEMDGL 486 (487)
T ss_pred HHHHHHHhcc
Confidence 4444444443
No 175
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.75 E-value=0.31 Score=46.25 Aligned_cols=81 Identities=11% Similarity=0.110 Sum_probs=50.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhh-cCceEEEEEe---ecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCceeC---C
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRA---QYPSNG--TPKGFGFCEFESAEGVLRALRLLNKFNID---G 197 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~-~G~v~~~~i~---~~~~tg--~~kg~gFV~f~~~~~A~~Al~~Lng~~i~---g 197 (577)
....|.|.+||+++|++++...++. ++.-..|..+ ....+. ..-+-|||.|.+.+++...+..++|+.|. |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999999997776 6655222222 221111 12356999999999999999999998873 2
Q ss_pred --eEEEEEEchh
Q 008117 198 --QELMLKVDQA 207 (577)
Q Consensus 198 --r~i~V~~a~~ 207 (577)
....|.+|-.
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 2445555544
No 176
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.62 E-value=1.7 Score=34.81 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=39.1
Q ss_pred eEEEc-CCCCCCCHHHHHHHHhhcCc-----eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008117 130 KVYVG-KIAPTADSDFVLSVLKVCGT-----VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (577)
Q Consensus 130 tlfVg-nLp~~~te~~L~~~F~~~G~-----v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~ 203 (577)
+|||. +--..++..+|..+|...+. |-.+.|..+ |+||+.... .|..++..|++..+.|+.|.|.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 45553 23347888889988887654 446666543 999998765 6788999999999999999997
Q ss_pred Ec
Q 008117 204 VD 205 (577)
Q Consensus 204 ~a 205 (577)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 54
No 177
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=89.52 E-value=1.2 Score=50.46 Aligned_cols=9 Identities=11% Similarity=0.508 Sum_probs=4.6
Q ss_pred CceEEEcCC
Q 008117 128 QTKVYVGKI 136 (577)
Q Consensus 128 ~~tlfVgnL 136 (577)
...+|+|++
T Consensus 145 ~qR~f~gvv 153 (1194)
T KOG4246|consen 145 PQRRFAGVV 153 (1194)
T ss_pred cceeeehhh
Confidence 445566533
No 178
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.27 E-value=6.5 Score=43.89 Aligned_cols=11 Identities=55% Similarity=0.673 Sum_probs=5.0
Q ss_pred HHHHHHHHhHh
Q 008117 480 RRKRIREKEED 490 (577)
Q Consensus 480 ~~~r~re~e~~ 490 (577)
.++|.++.++-
T Consensus 354 ~~dR~qeqee~ 364 (668)
T KOG2253|consen 354 RRDRHQEQEEL 364 (668)
T ss_pred hhHHHHHHHHH
Confidence 34455544433
No 179
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.10 E-value=0.22 Score=52.84 Aligned_cols=73 Identities=7% Similarity=-0.018 Sum_probs=58.8
Q ss_pred CceEEEcCCCCCCC-HHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 128 QTKVYVGKIAPTAD-SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 128 ~~tlfVgnLp~~~t-e~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
.+.|-+..+++... -++|...|.+||.|..|.|-.. --.|.|+|.+..+|-.|.. .++..|+++.|+|.|-.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 45555566666554 4699999999999999987543 3479999999999988887 59999999999998865
Q ss_pred h
Q 008117 207 A 207 (577)
Q Consensus 207 ~ 207 (577)
.
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 5
No 180
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=88.68 E-value=4.9 Score=43.85 Aligned_cols=70 Identities=23% Similarity=0.290 Sum_probs=56.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhh--cCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEE
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKV--CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELML 202 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~--~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Ln--g~~i~gr~i~V 202 (577)
..|.|.+.-||.++..++++.||.. |-++.+|.+..+. -=||+|.+..+|+.|...|. -..|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4578889999999999999999985 8899999887662 35899999999999998773 34567777664
Q ss_pred E
Q 008117 203 K 203 (577)
Q Consensus 203 ~ 203 (577)
.
T Consensus 247 R 247 (684)
T KOG2591|consen 247 R 247 (684)
T ss_pred h
Confidence 3
No 181
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=87.67 E-value=0.74 Score=34.37 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=22.0
Q ss_pred CceEEEEeCCHHHHHHHHHHHhhh
Q 008117 270 TNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 270 kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
++++||+|.+.++|..|+..|++.
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~ 44 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGR 44 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 589999999999999999998864
No 182
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=86.94 E-value=0.3 Score=52.35 Aligned_cols=64 Identities=19% Similarity=0.097 Sum_probs=45.1
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhhHH
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCMVE 295 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~i~ 295 (577)
+||+||+..++..+|+++++..+.++...- +..-.+++.+||||+|.+..++..||.+--..|.
T Consensus 291 i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig 355 (419)
T KOG0116|consen 291 IFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIG 355 (419)
T ss_pred eEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccC
Confidence 499999999999999999774443332221 1122355559999999999999998876533333
No 183
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=86.73 E-value=1.9 Score=46.28 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=18.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhh
Q 008117 124 AEKPQTKVYVGKIAPTADSDFVLSVLKV 151 (577)
Q Consensus 124 ~~~~~~tlfVgnLp~~~te~~L~~~F~~ 151 (577)
...+..++|-.-=+-.+...-|..+|..
T Consensus 302 ~~r~~~t~W~s~D~~~~D~~r~~~LFEs 329 (817)
T KOG1925|consen 302 ASRPCATLWASLDPVSVDTARLEHLFES 329 (817)
T ss_pred cccccchhhhccCcceecHHHHHHHHHH
Confidence 3455666776544556777889999973
No 184
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.84 E-value=2.8 Score=44.64 Aligned_cols=69 Identities=10% Similarity=0.104 Sum_probs=59.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC-ceEEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceeCC
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG 197 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G-~v~~~~i~~~~~tg~~kg~-gFV~f~~~~~A~~Al~~Lng~~i~g 197 (577)
.+++.|+|-.+|..+|-.+|..|+..|- .|..++|+++ |.+..| .+|.|.+..+|......+||..|+.
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd---~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD---GMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec---CCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3488999999999999999999998765 6889999985 455445 6899999999999999999998863
No 185
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=85.56 E-value=1.3 Score=48.20 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=39.7
Q ss_pred cCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC----CeEEEEEEc
Q 008117 152 CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELMLKVD 205 (577)
Q Consensus 152 ~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~----gr~i~V~~a 205 (577)
.|.-..+.++.|=.+....|||||.|.+++++..+.+++||+.+. .+.+.+.||
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYA 470 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYA 470 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehh
Confidence 454455556666555566799999999999999999999998763 344455554
No 186
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=85.46 E-value=0.68 Score=54.01 Aligned_cols=37 Identities=8% Similarity=0.069 Sum_probs=25.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeec
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY 163 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~ 163 (577)
...+++|--+-..+..+.|+.+.+.|+...++....|
T Consensus 71 kak~~~v~t~ka~~PpeHLrki~~~~sdm~s~~~~~D 107 (2365)
T COG5178 71 KAKTLHVLTLKAPIPPEHLRKIQSPCSDMPSVLTKVD 107 (2365)
T ss_pred hhhheeeeccCCCCCHHHHHhhhCccccchhhhhhhh
Confidence 3566777777777777888888887776655544333
No 187
>PHA03378 EBNA-3B; Provisional
Probab=84.88 E-value=8.2 Score=43.20 Aligned_cols=12 Identities=8% Similarity=0.194 Sum_probs=6.8
Q ss_pred CCCHHHHHHHHh
Q 008117 139 TADSDFVLSVLK 150 (577)
Q Consensus 139 ~~te~~L~~~F~ 150 (577)
.-+...|+.|+.
T Consensus 819 gp~k~ilrqllt 830 (991)
T PHA03378 819 GPTKQILRQLLT 830 (991)
T ss_pred CcHHHHHHHHhh
Confidence 345556666663
No 188
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=84.60 E-value=0.61 Score=46.29 Aligned_cols=62 Identities=11% Similarity=0.019 Sum_probs=48.9
Q ss_pred ccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhhH
Q 008117 232 AGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~-~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~i 294 (577)
++|.||+..+++.+|.+|+..+ .+.+ .-.-.+..|.+.|.|-|.|...++|..|+..++++.
T Consensus 86 v~v~NL~~~V~~~Dl~eLF~~~~~~~r-~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ 148 (243)
T KOG0533|consen 86 VNVSNLPYGVIDADLKELFAEFGELKR-VAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVA 148 (243)
T ss_pred eeeecCCcCcchHHHHHHHHHhccceE-EeeccCCCCCCCccceeeecchHhHHHHHHHhcCcc
Confidence 4899999999999999995522 2211 112237789999999999999999999999999853
No 189
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.18 E-value=4.5 Score=44.41 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=60.5
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHHhhc----CceEEEEEeecC----------CCCC---------------------
Q 008117 125 EKPQTKVYVGKIAP-TADSDFVLSVLKVC----GTVKSWKRAQYP----------SNGT--------------------- 168 (577)
Q Consensus 125 ~~~~~tlfVgnLp~-~~te~~L~~~F~~~----G~v~~~~i~~~~----------~tg~--------------------- 168 (577)
...+++|-|.||.| .+...+|.-+|+.| |.|.+|.|...- ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45678999999998 57778999999876 589999876421 1222
Q ss_pred ---------------c-ceEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 008117 169 ---------------P-KGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 204 (577)
Q Consensus 169 ---------------~-kg~gFV~f~~~~~A~~Al~~Lng~~i~g--r~i~V~~ 204 (577)
. .-||.|+|.++..|...+..++|+.|.. ..|-+.|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1 1368999999999999999999999964 4444443
No 190
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=83.24 E-value=0.99 Score=44.71 Aligned_cols=61 Identities=18% Similarity=0.086 Sum_probs=45.1
Q ss_pred cccccCCCcccchhhhcCCCCCCcccc-cCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLK-DNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k-~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
..|++|+....+...+...+.+++... ..-..+...|.+|||+||+|.+.+.+..|+. |++
T Consensus 103 sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~g 164 (231)
T KOG4209|consen 103 SVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDG 164 (231)
T ss_pred eEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCC
Confidence 359999999988888665566554332 1222346777899999999999999999988 544
No 191
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=81.80 E-value=0.88 Score=50.74 Aligned_cols=68 Identities=19% Similarity=0.118 Sum_probs=48.5
Q ss_pred ccccccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhhHHH
Q 008117 226 LKETQDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEE 296 (577)
Q Consensus 226 ~~~~~~~~v~nl~~~~~~~~l~e~~k------s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~i~e 296 (577)
...||+ |++||+..+++..|...++ ++.++-.- +....-.-..||||.|.++.+++.|+..|++++-.
T Consensus 172 P~TTNl-yv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpR--tEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 172 PQTTNL-YVGNLNPSVDENFLLRTFGRFGPLASVKIMWPR--TEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred Ccccce-eeecCCccccHHHHHHHhcccCcccceeeeccc--chhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 445665 9999999999998765532 33332211 11333455779999999999999999999997653
No 192
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=80.67 E-value=59 Score=31.77 Aligned_cols=11 Identities=45% Similarity=0.516 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 008117 501 IAVAKRRAEEE 511 (577)
Q Consensus 501 ~~~~~~~~~~~ 511 (577)
.++.+++.+|.
T Consensus 162 keeekr~~eE~ 172 (216)
T PF11600_consen 162 KEEEKRKKEEE 172 (216)
T ss_pred HHHHHHhhHHH
Confidence 44444555544
No 193
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=77.71 E-value=7.9 Score=30.40 Aligned_cols=55 Identities=9% Similarity=-0.011 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008117 139 TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (577)
Q Consensus 139 ~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V 202 (577)
.++-.+|+..|..|+- ..|..++ | | -||.|.+..+|.+|....||..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5677899999999983 2333442 2 2 379999999999999999999988877664
No 194
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=75.80 E-value=14 Score=42.46 Aligned_cols=27 Identities=15% Similarity=0.093 Sum_probs=13.1
Q ss_pred cccccccccccccCCC-CCCCCccchhh
Q 008117 3 EYTVRKVGRLQILHKR-TTSTTPFLQQT 29 (577)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~~~qq~ 29 (577)
.+...++-++|-+++. +.+.+++|+++
T Consensus 541 ~~~~s~~~~~P~~ap~s~~~~tp~q~~~ 568 (756)
T KOG2375|consen 541 SNSSSPSIFLPRVAPASPMAMTPFQNSQ 568 (756)
T ss_pred cCcccCCCCCCCcCccccCCCCCCcccc
Confidence 3334566666666633 33344444433
No 195
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=75.39 E-value=3.1 Score=41.17 Aligned_cols=83 Identities=13% Similarity=0.053 Sum_probs=61.3
Q ss_pred HHHHHHHHhCCceeCCeEEEEEEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC-----CCccc
Q 008117 182 GVLRALRLLNKFNIDGQELMLKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK-----SPENL 256 (577)
Q Consensus 182 ~A~~Al~~Lng~~i~gr~i~V~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~k-----s~~~~ 256 (577)
-|..|-..|++....|+.|.|.|+... +++|.||...++.+.+..-+. +..++
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a----------------------~l~V~nl~~~~sndll~~~f~~fg~~e~av~ 63 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHA----------------------ELYVVNLMQGASNDLLEQAFRRFGPIERAVA 63 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccc----------------------eEEEEecchhhhhHHHHHhhhhcCccchhee
Confidence 467788889999999999999887442 358888888887776654422 11122
Q ss_pred ccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHh
Q 008117 257 KDNETGNKESHDPTNFGVVTEEDRKADQEALEKLT 291 (577)
Q Consensus 257 k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~ 291 (577)
.. +.-++..+-|+|.|...-.+.+|+..++
T Consensus 64 ~v-----D~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 64 KV-----DDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ee-----cccccccccchhhhhcchhHHHHHHHhc
Confidence 11 4457788899999999999999988773
No 196
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=75.24 E-value=26 Score=37.25 Aligned_cols=7 Identities=43% Similarity=0.724 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 008117 182 GVLRALR 188 (577)
Q Consensus 182 ~A~~Al~ 188 (577)
+..+||+
T Consensus 458 dLL~aIr 464 (518)
T KOG1830|consen 458 DLLAAIR 464 (518)
T ss_pred HHHHHHH
Confidence 3444554
No 197
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=74.28 E-value=5.5 Score=43.48 Aligned_cols=31 Identities=19% Similarity=0.123 Sum_probs=14.7
Q ss_pred EEEEEeecCCCCCcceEEE--EEeCCHHHHHHHH
Q 008117 156 KSWKRAQYPSNGTPKGFGF--CEFESAEGVLRAL 187 (577)
Q Consensus 156 ~~~~i~~~~~tg~~kg~gF--V~f~~~~~A~~Al 187 (577)
+.|+|+.. ..+.+.|.++ ++.-+..+|..||
T Consensus 305 ~RcRvvNA-Ll~g~~GL~L~p~ec~sW~~avaaL 337 (582)
T PF03276_consen 305 LRCRVVNA-LLGGHLGLALTPNECGSWASAVAAL 337 (582)
T ss_pred HHHHHHHH-HhcCCCccccCccccccHHHHHHHH
Confidence 33444432 2333344433 4455666666666
No 198
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.94 E-value=9.4 Score=42.30 Aligned_cols=7 Identities=29% Similarity=0.202 Sum_probs=3.2
Q ss_pred CceeCCe
Q 008117 192 KFNIDGQ 198 (577)
Q Consensus 192 g~~i~gr 198 (577)
|..+.|+
T Consensus 335 n~r~~GR 341 (728)
T KOG4592|consen 335 NDRIFGR 341 (728)
T ss_pred ccccccc
Confidence 3444454
No 199
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=71.34 E-value=1.4 Score=42.46 Aligned_cols=56 Identities=11% Similarity=-0.086 Sum_probs=42.6
Q ss_pred ccccCCCcccchhhhcCCCC----CCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTK----SPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~k----s~~-~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+|+...++++.|.+|+- .+. .+.. ...++.| |+||.|.+.-...-|+..+|++
T Consensus 12 l~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~-----~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~ 72 (267)
T KOG4454|consen 12 LLVQNMYSGVSEELLSELFIQAGPVYKVGIPS-----GQDQEQK-FAYVFFPNENSVQLAGQLENGD 72 (267)
T ss_pred HHHHhhhhhhhHHHHHHHhhccCceEEEeCCC-----CccCCCc-eeeeecccccchhhhhhhcccc
Confidence 59999999999999999832 222 1111 3345556 9999999999999999988876
No 200
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.77 E-value=83 Score=33.35 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=46.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCc-eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~-v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~ 189 (577)
.+.|-|.++|.....++|..+|+.||. --.|+++-+ ..+|..|.+...|..||-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 577889999999988999999999984 456677766 3899999999999999873
No 201
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=69.54 E-value=2.3 Score=43.76 Aligned_cols=51 Identities=22% Similarity=0.092 Sum_probs=39.5
Q ss_pred ccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~k------s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||++|...+++.+|+..+- ++.+. ..+++|||+|.++.+|+.|.++.-+.
T Consensus 231 LyIg~l~d~v~e~dIrdhFyqyGeirsi~~~-----------~~~~CAFv~ftTR~aAE~Aae~~~n~ 287 (377)
T KOG0153|consen 231 LYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL-----------PRKGCAFVTFTTREAAEKAAEKSFNK 287 (377)
T ss_pred EEecccccchhHHHHHHHHhhcCCeeeEEee-----------cccccceeeehhhHHHHHHHHhhcce
Confidence 69999988999999887732 33322 23679999999999999998877553
No 202
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=68.19 E-value=4.5 Score=41.28 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=10.3
Q ss_pred EEEEEEchhhHHHHHhhhh
Q 008117 199 ELMLKVDQATREYLERYVD 217 (577)
Q Consensus 199 ~i~V~~a~~~~~~~~~~~~ 217 (577)
.+.|.+.+....++.+|..
T Consensus 162 FmYiRYtqpp~dLw~WyEp 180 (453)
T KOG2888|consen 162 FMYIRYTQPPADLWDWYEP 180 (453)
T ss_pred eeEEeecCChhHHHHHhhh
Confidence 3455555655555555543
No 203
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=68.12 E-value=2 Score=48.77 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=11.9
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCc
Q 008117 169 PKGFGFCEFESAEGVLRALRLLNKF 193 (577)
Q Consensus 169 ~kg~gFV~f~~~~~A~~Al~~Lng~ 193 (577)
.--||||.-...- -..+|..+|-.
T Consensus 157 ~DtygfVD~dvff-Qls~~~g~hp~ 180 (1194)
T KOG4246|consen 157 TDTYGFVDQDVFF-QLSKMQGLHPS 180 (1194)
T ss_pred ccccccccHHHHH-HHHHHhcCCCc
Confidence 3358888633222 33445544443
No 204
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=64.87 E-value=43 Score=38.21 Aligned_cols=8 Identities=13% Similarity=0.065 Sum_probs=4.3
Q ss_pred hcCceEEE
Q 008117 151 VCGTVKSW 158 (577)
Q Consensus 151 ~~G~v~~~ 158 (577)
+-|.|..+
T Consensus 1071 ~~~diIei 1078 (1106)
T KOG0162|consen 1071 KKGDIIEI 1078 (1106)
T ss_pred cCCCEEEE
Confidence 44555554
No 205
>PHA03378 EBNA-3B; Provisional
Probab=64.12 E-value=1e+02 Score=34.96 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=4.7
Q ss_pred cccccccccc
Q 008117 5 TVRKVGRLQI 14 (577)
Q Consensus 5 ~~~~~~~~~~ 14 (577)
|.-+.|-|++
T Consensus 665 ~w~~~~hi~~ 674 (991)
T PHA03378 665 TWTQIGHIPY 674 (991)
T ss_pred cccccCCcCC
Confidence 3344555554
No 206
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=63.66 E-value=6 Score=37.21 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=54.3
Q ss_pred CCceEEEcCCCCCCCHH-----HHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 008117 127 PQTKVYVGKIAPTADSD-----FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-EL 200 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~-----~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr-~i 200 (577)
-.+++++.+|+..+-.. ....+|..|.....+.+++. .++-.|.|.++..|..|...|++..|.|. .|
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 34667888887654332 44566666666555544432 35666899999999999999999999988 88
Q ss_pred EEEEchhh
Q 008117 201 MLKVDQAT 208 (577)
Q Consensus 201 ~V~~a~~~ 208 (577)
...|++..
T Consensus 83 k~yfaQ~~ 90 (193)
T KOG4019|consen 83 KLYFAQPG 90 (193)
T ss_pred EEEEccCC
Confidence 88777653
No 207
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.66 E-value=39 Score=39.33 Aligned_cols=9 Identities=11% Similarity=0.371 Sum_probs=3.9
Q ss_pred CeEEEEEEc
Q 008117 197 GQELMLKVD 205 (577)
Q Consensus 197 gr~i~V~~a 205 (577)
|++..++|+
T Consensus 358 gr~f~Cn~C 366 (1007)
T KOG1984|consen 358 GRKFICNFC 366 (1007)
T ss_pred CceEEecCC
Confidence 444444443
No 208
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=61.58 E-value=1.8e+02 Score=29.23 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=13.0
Q ss_pred CHHHHHHHHhhcCceEEEEEe
Q 008117 141 DSDFVLSVLKVCGTVKSWKRA 161 (577)
Q Consensus 141 te~~L~~~F~~~G~v~~~~i~ 161 (577)
++.-|+..|..||.|..|.|+
T Consensus 174 se~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 174 SEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred hHHHHHHHHHHhccceecCCc
Confidence 455666677777766655543
No 209
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=61.00 E-value=1.9e+02 Score=29.16 Aligned_cols=10 Identities=20% Similarity=0.308 Sum_probs=5.7
Q ss_pred CCCceEEEEe
Q 008117 268 DPTNFGVVTE 277 (577)
Q Consensus 268 ~~kgfgfV~f 277 (577)
...||||-..
T Consensus 211 q~~gfg~g~d 220 (445)
T KOG2891|consen 211 QFHGFGFGGD 220 (445)
T ss_pred eeeccccCcc
Confidence 3567776433
No 210
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=56.61 E-value=1.8 Score=47.05 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=54.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~ 196 (577)
.++|||.||+++++-.+|..++..+-.+..+.+.....-.....+++|+|.---...-|+.+||+..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 478999999999999999999999988877776544333344567899999777777777778887654
No 211
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=56.54 E-value=71 Score=32.29 Aligned_cols=48 Identities=15% Similarity=0.080 Sum_probs=36.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCce-EEEEEeecCCCCCcceEEEEEeCCHH
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAE 181 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v-~~~~i~~~~~tg~~kg~gFV~f~~~~ 181 (577)
.+-|||+||+.++...+|+..+.+.|.+ .++.+ ..+.|-||+.|-+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 4569999999999999999999988843 44433 234578999997643
No 212
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.18 E-value=1.3e+02 Score=35.12 Aligned_cols=10 Identities=10% Similarity=0.102 Sum_probs=5.4
Q ss_pred CeEEEEEEch
Q 008117 197 GQELMLKVDQ 206 (577)
Q Consensus 197 gr~i~V~~a~ 206 (577)
|++.+++++.
T Consensus 238 gr~WrCNlC~ 247 (887)
T KOG1985|consen 238 GRRWRCNLCG 247 (887)
T ss_pred Cceeeechhh
Confidence 5566655443
No 213
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=55.67 E-value=14 Score=31.40 Aligned_cols=56 Identities=5% Similarity=-0.146 Sum_probs=37.2
Q ss_pred cccCCCcccchhhhcCCCC-------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 233 GAGKEDESVQSVEKNEPTK-------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 233 ~v~nl~~~~~~~~l~e~~k-------s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
-+.|||...+...|.++.. ...... .+-.++-+.|||||.|.+++.+.......++
T Consensus 5 MirNIPn~~t~~~L~~~l~~~~~g~yDF~YLP----iDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g 67 (97)
T PF04059_consen 5 MIRNIPNKYTQEMLIQILDEHFKGKYDFFYLP----IDFKNKCNLGYAFVNFTSPQAAIRFYKAFNG 67 (97)
T ss_pred EEecCCCCCCHHHHHHHHHHhccCcceEEEee----eeccCCCceEEEEEEcCCHHHHHHHHHHHcC
Confidence 5677887777777655511 111111 1245667899999999999999887766654
No 214
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=52.41 E-value=40 Score=37.32 Aligned_cols=6 Identities=33% Similarity=0.202 Sum_probs=2.3
Q ss_pred hhHHHH
Q 008117 292 CMVEER 297 (577)
Q Consensus 292 ~~i~e~ 297 (577)
..++.+
T Consensus 558 ~aveAf 563 (757)
T KOG4368|consen 558 AAVEAF 563 (757)
T ss_pred HHHHHh
Confidence 333333
No 215
>PRK11901 hypothetical protein; Reviewed
Probab=51.47 E-value=2.2e+02 Score=29.65 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=38.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEE--EeCCHHHHHHHHHHhCC
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFC--EFESAEGVLRALRLLNK 192 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV--~f~~~~~A~~Al~~Lng 192 (577)
...+|-|..+ ...+.|..|...++ +..+.|+.-...|+. .|..| .|.+.++|..||..|-.
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 4556655554 45777888877776 333444433334443 44433 59999999999998853
No 216
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=46.59 E-value=27 Score=27.58 Aligned_cols=58 Identities=19% Similarity=0.164 Sum_probs=44.3
Q ss_pred HHHHHHHhhcC-ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008117 143 DFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (577)
Q Consensus 143 ~~L~~~F~~~G-~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~ 203 (577)
.+|..-|...| .+..+..+..+.++.+...-||+.....+... .|+=..|+|+.+.|.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VE 60 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVE 60 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEe
Confidence 46788899999 78899988888888888888998876533322 356667788888875
No 217
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=46.12 E-value=1.9e+02 Score=33.56 Aligned_cols=7 Identities=29% Similarity=0.544 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 008117 501 IAVAKRR 507 (577)
Q Consensus 501 ~~~~~~~ 507 (577)
+.-++++
T Consensus 282 lLTakQK 288 (1064)
T KOG1144|consen 282 LLTAKQK 288 (1064)
T ss_pred cchHhhH
Confidence 3333333
No 218
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=45.88 E-value=5.3e+02 Score=30.08 Aligned_cols=8 Identities=25% Similarity=0.243 Sum_probs=3.9
Q ss_pred EEEeCCHH
Q 008117 274 VVTEEDRK 281 (577)
Q Consensus 274 fV~f~~~e 281 (577)
-|.|++..
T Consensus 586 aVCYeT~~ 593 (1259)
T KOG0163|consen 586 AVCYETEQ 593 (1259)
T ss_pred ceeechHH
Confidence 45555543
No 219
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.87 E-value=1.4e+02 Score=30.21 Aligned_cols=12 Identities=17% Similarity=-0.053 Sum_probs=6.3
Q ss_pred cccccccccccc
Q 008117 3 EYTVRKVGRLQI 14 (577)
Q Consensus 3 ~~~~~~~~~~~~ 14 (577)
|++-+|-|.-|+
T Consensus 146 I~~clk~G~~p~ 157 (338)
T KOG0917|consen 146 IHNCLKNGETPQ 157 (338)
T ss_pred HHHHHhCCCCCC
Confidence 344555565554
No 220
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=45.40 E-value=18 Score=38.36 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=42.6
Q ss_pred ccccCCCcccchhhhcCCCCCCc--ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhhHHH
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPE--NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEE 296 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~--~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~i~e 296 (577)
+|++||....+.+++..+++... ....+. ---||+||.+.+...|.+|++.+++.+..
T Consensus 4 lyignL~p~~~psdl~svfg~ak~~~~g~fl-------~k~gyafvd~pdq~wa~kaie~~sgk~el 63 (584)
T KOG2193|consen 4 LYIGNLSPQVTPSDLESVFGDAKIPGSGQFL-------VKSGYAFVDCPDQQWANKAIETLSGKVEL 63 (584)
T ss_pred ccccccCCCCChHHHHHHhccccCCCCccee-------eecceeeccCCchhhhhhhHHhhchhhhh
Confidence 59999999999999988755111 110000 01479999999999999999999987653
No 221
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=44.47 E-value=41 Score=33.08 Aligned_cols=85 Identities=12% Similarity=0.183 Sum_probs=48.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFE-SAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~-~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
....||||+|....-.....+.+..+-.-.+|.++.........|||.-... +.++...+|.+|.+..+.-..+.|..+
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~GhS 115 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLVGHS 115 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccccccccccccHHHHHHHHHHhhccCcccceEEEecC
Confidence 3678999999775443332233332222223444443333344567754444 677888888877776666566666665
Q ss_pred hhhHHH
Q 008117 206 QATREY 211 (577)
Q Consensus 206 ~~~~~~ 211 (577)
...+..
T Consensus 116 TGcQdi 121 (299)
T KOG4840|consen 116 TGCQDI 121 (299)
T ss_pred ccchHH
Confidence 555443
No 222
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=43.05 E-value=8 Score=42.46 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=13.5
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 008117 482 KRIREKEEDLADEVREEEEIAVAKRRA 508 (577)
Q Consensus 482 ~r~re~e~~~~~r~re~~e~~~~~~~~ 508 (577)
+..-+.+..+.|+.++.+++.+..++.
T Consensus 270 e~~~~~~~ieed~~~~~~~il~k~~~~ 296 (752)
T KOG0670|consen 270 EEEAESEIIEEDRRKREEEILEKYKQK 296 (752)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 344444455555655555555544333
No 223
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.70 E-value=1.1e+02 Score=34.90 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=5.0
Q ss_pred eeCCeEEEEEE
Q 008117 194 NIDGQELMLKV 204 (577)
Q Consensus 194 ~i~gr~i~V~~ 204 (577)
-+.|..+.+.+
T Consensus 497 ~~~~~~l~l~~ 507 (585)
T PRK14950 497 SVEKNTLTLSF 507 (585)
T ss_pred eecCCEEEEec
Confidence 34444555443
No 224
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=39.96 E-value=2e+02 Score=35.05 Aligned_cols=7 Identities=29% Similarity=0.491 Sum_probs=2.6
Q ss_pred HhhhHHH
Q 008117 290 LTCMVEE 296 (577)
Q Consensus 290 l~~~i~e 296 (577)
+..++++
T Consensus 345 fc~~vkk 351 (1639)
T KOG0905|consen 345 FCHMVKK 351 (1639)
T ss_pred HHHHHHH
Confidence 3333333
No 225
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=39.75 E-value=25 Score=36.61 Aligned_cols=59 Identities=20% Similarity=0.077 Sum_probs=37.5
Q ss_pred cccCCCcccchhhhcCCCCCCccc---------ccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHh
Q 008117 233 GAGKEDESVQSVEKNEPTKSPENL---------KDNETGNKESHDPTNFGVVTEEDRKADQEALEKLT 291 (577)
Q Consensus 233 ~v~nl~~~~~~~~l~e~~ks~~~~---------k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~ 291 (577)
||-.++..++..++.+++..+.++ +..--.+++++..||-|.|+|++...|..|+.-+.
T Consensus 70 ~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~a 137 (351)
T KOG1995|consen 70 FVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFA 137 (351)
T ss_pred eeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhc
Confidence 555566666655555543311111 11111346889999999999999999999986443
No 226
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=39.02 E-value=26 Score=41.81 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 008117 62 MCGLPRYPAPYPSMVRPA 79 (577)
Q Consensus 62 ~pg~p~~p~P~p~~~~p~ 79 (577)
+||.||+|||+|+.-+|.
T Consensus 5 ppg~ppppppppg~epps 22 (2365)
T COG5178 5 PPGNPPPPPPPPGFEPPS 22 (2365)
T ss_pred CCCCCcccccCCCCCCCC
Confidence 455555455554444443
No 227
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=38.42 E-value=19 Score=42.31 Aligned_cols=41 Identities=41% Similarity=0.643 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008117 410 RRKIEEAEREYERCLK-DWEYREREREKERQYEKEKEKERER 450 (577)
Q Consensus 410 ~~~~~~~er~~~er~r-~~e~rer~~e~~r~~~~er~~er~r 450 (577)
++|+...|+..++.++ .+++|||+++++++++++++++-+|
T Consensus 582 kKRee~~ek~RReaEq~~reerERer~~e~~rerer~~~~~r 623 (982)
T PF03154_consen 582 KKREERVEKARREAEQRAREEREREREREREREREREREAER 623 (982)
T ss_pred hhhHHHHHHHHhhhhccchhhhhhcccccchhhhhhhhhhhh
No 228
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=38.37 E-value=5.2e+02 Score=28.15 Aligned_cols=9 Identities=44% Similarity=0.294 Sum_probs=4.1
Q ss_pred CHHHHHHHH
Q 008117 141 DSDFVLSVL 149 (577)
Q Consensus 141 te~~L~~~F 149 (577)
+.+++..|+
T Consensus 145 ~~~~v~sfl 153 (429)
T PRK00247 145 TSEEVESFL 153 (429)
T ss_pred CHHHHHHHH
Confidence 344444444
No 229
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=37.24 E-value=13 Score=38.04 Aligned_cols=8 Identities=25% Similarity=0.812 Sum_probs=3.4
Q ss_pred eEEEEEeC
Q 008117 171 GFGFCEFE 178 (577)
Q Consensus 171 g~gFV~f~ 178 (577)
||-||-|.
T Consensus 161 GFmYiRYt 168 (453)
T KOG2888|consen 161 GFMYIRYT 168 (453)
T ss_pred eeeEEeec
Confidence 34444443
No 230
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.95 E-value=2.6e+02 Score=31.77 Aligned_cols=8 Identities=13% Similarity=-0.567 Sum_probs=3.1
Q ss_pred ceEEEEEe
Q 008117 170 KGFGFCEF 177 (577)
Q Consensus 170 kg~gFV~f 177 (577)
++++.+.+
T Consensus 669 ~~~~h~~~ 676 (861)
T KOG3161|consen 669 KRRVHLFE 676 (861)
T ss_pred Cceeeecc
Confidence 34443333
No 231
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=36.83 E-value=42 Score=35.99 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=4.5
Q ss_pred EEeCCHHHH
Q 008117 175 CEFESAEGV 183 (577)
Q Consensus 175 V~f~~~~~A 183 (577)
|.|.+.-.+
T Consensus 385 vVfD~~Va~ 393 (480)
T KOG2675|consen 385 VVFDDLVAI 393 (480)
T ss_pred EEEecccee
Confidence 556554433
No 232
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=36.55 E-value=3.6e+02 Score=28.10 Aligned_cols=71 Identities=14% Similarity=0.181 Sum_probs=36.8
Q ss_pred CceEEEcCCCCCCCHHHHH-----------HHHhhcC-ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008117 128 QTKVYVGKIAPTADSDFVL-----------SVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~-----------~~F~~~G-~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i 195 (577)
.+.|.| +|++--|..+|+ -|...|| ....+.|+++-.+.. +..-+......||.-|-.---
T Consensus 64 rrAvLi-GINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~s~------~~~PT~~Nir~Al~wLV~~aq 136 (362)
T KOG1546|consen 64 RRAVLI-GINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDESP------VRIPTGKNIRRALRWLVESAQ 136 (362)
T ss_pred ceEEEE-eecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCCcc------cccCcHHHHHHHHHHHHhcCC
Confidence 345666 466666666554 3456899 556777777632111 222334445556654422222
Q ss_pred CCeEEEEEEc
Q 008117 196 DGQELMLKVD 205 (577)
Q Consensus 196 ~gr~i~V~~a 205 (577)
-|-.|.+.|+
T Consensus 137 ~gD~LvfHYS 146 (362)
T KOG1546|consen 137 PGDSLVFHYS 146 (362)
T ss_pred CCCEEEEEec
Confidence 3445666655
No 233
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.70 E-value=2e+02 Score=33.65 Aligned_cols=8 Identities=38% Similarity=0.567 Sum_probs=5.7
Q ss_pred EEEEeCCH
Q 008117 173 GFCEFESA 180 (577)
Q Consensus 173 gFV~f~~~ 180 (577)
-||+|.+.
T Consensus 230 PFV~fid~ 237 (887)
T KOG1985|consen 230 PFVEFIDQ 237 (887)
T ss_pred CeEEecCC
Confidence 47788776
No 234
>KOG4709 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.65 E-value=2.5e+02 Score=26.86 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=10.7
Q ss_pred ccCccccchhhhhccCCccccc
Q 008117 528 AVNGSLAEESAVESKGMDVEHD 549 (577)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~ 549 (577)
.|+++.+++..+.-.|..++.|
T Consensus 93 nld~e~~de~es~qeD~~~esd 114 (217)
T KOG4709|consen 93 NLDREVTDETESVQEDHPNESD 114 (217)
T ss_pred ccchhccccccchhcccccCCc
Confidence 5666665555444334333333
No 235
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=34.96 E-value=75 Score=32.37 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=55.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecC-------CCCCcceEEEEEeCCHHHHHHHHH----HhCC--c
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-------SNGTPKGFGFCEFESAEGVLRALR----LLNK--F 193 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~-------~tg~~kg~gFV~f~~~~~A~~Al~----~Lng--~ 193 (577)
..+.|...||...++-..+...|.+||+|.+|.++.+. ..-+..+...+.|-+...+..... .|.. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999998764 122334667888888777655432 2221 2
Q ss_pred eeCCeEEEEEEc
Q 008117 194 NIDGQELMLKVD 205 (577)
Q Consensus 194 ~i~gr~i~V~~a 205 (577)
.+....|.|.|.
T Consensus 94 ~L~S~~L~lsFV 105 (309)
T PF10567_consen 94 KLKSESLTLSFV 105 (309)
T ss_pred hcCCcceeEEEE
Confidence 345556666543
No 236
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=33.91 E-value=69 Score=25.25 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=44.0
Q ss_pred HHHHHHHhhcC-ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 143 DFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 143 ~~L~~~F~~~G-~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
++|.+-|...| .|..+.-+..+.++.+...-||++....+.. ..|+=..|+|..|.|..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~ 61 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVER 61 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEec
Confidence 46778888888 7888888888778888889999988665522 23455667788888754
No 237
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=33.74 E-value=66 Score=26.67 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=33.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEe
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEF 177 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f 177 (577)
..-||||+++..+-+.-...+...++.-.-+.+..+ ....||+|-++
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~---~neqG~~~~t~ 71 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD---NNEQGFDFRTL 71 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc---CCCCCEEEEEe
Confidence 456999999999988877777776665444444433 22779999877
No 238
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.70 E-value=1e+02 Score=35.29 Aligned_cols=26 Identities=8% Similarity=0.138 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHhhc-CceEEEEE
Q 008117 135 KIAPTADSDFVLSVLKVC-GTVKSWKR 160 (577)
Q Consensus 135 nLp~~~te~~L~~~F~~~-G~v~~~~i 160 (577)
.|....+...|..+...| |.-+.|.|
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (624)
T PRK14959 541 RLTDAATETTLAGLVRDYFGDACRVEV 567 (624)
T ss_pred HhcCcchHHHHHHHHHHHcCCCcEEEe
Confidence 344455666666666654 87777766
No 239
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=33.31 E-value=3.7e+02 Score=31.30 Aligned_cols=8 Identities=13% Similarity=0.056 Sum_probs=3.0
Q ss_pred ccccccCC
Q 008117 10 GRLQILHK 17 (577)
Q Consensus 10 ~~~~~~~~ 17 (577)
+..+++..
T Consensus 630 ~~m~i~~~ 637 (759)
T PF05518_consen 630 PEMPISTV 637 (759)
T ss_pred cccccccC
Confidence 33333333
No 240
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=33.11 E-value=12 Score=38.39 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHHhhhHH
Q 008117 279 DRKADQEALEKLTCMVE 295 (577)
Q Consensus 279 ~~e~a~~Al~~l~~~i~ 295 (577)
+.+.|.+++..+..+..
T Consensus 146 ~Veeaq~~~~e~E~lk~ 162 (319)
T KOG0796|consen 146 NVEEAQKAMKEVEELKA 162 (319)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 44566666666665553
No 241
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=32.04 E-value=35 Score=29.36 Aligned_cols=22 Identities=41% Similarity=0.335 Sum_probs=16.7
Q ss_pred eEEEEeCCHHHHHHHHHHHhhh
Q 008117 272 FGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 272 fgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.|||.|.+.+.|..|+.++...
T Consensus 39 ~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 39 EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEEESS---HHHHHHHHHHT
T ss_pred EEEEEECCcchHHHHHHHHHhc
Confidence 7999999999999999887665
No 242
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=31.18 E-value=60 Score=33.59 Aligned_cols=17 Identities=6% Similarity=0.012 Sum_probs=9.4
Q ss_pred EEEEEeCCHHHHHHHHH
Q 008117 172 FGFCEFESAEGVLRALR 188 (577)
Q Consensus 172 ~gFV~f~~~~~A~~Al~ 188 (577)
--||-|.-..-|..||-
T Consensus 175 ~v~vry~pe~iACaciy 191 (367)
T KOG0835|consen 175 DVFVRYSPESIACACIY 191 (367)
T ss_pred ceeeecCHHHHHHHHHH
Confidence 35666665555555544
No 243
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.66 E-value=1.9e+02 Score=32.78 Aligned_cols=9 Identities=11% Similarity=0.276 Sum_probs=5.3
Q ss_pred CCeEEEEEE
Q 008117 196 DGQELMLKV 204 (577)
Q Consensus 196 ~gr~i~V~~ 204 (577)
.|+.+.|..
T Consensus 533 ~g~~~~v~c 541 (585)
T PRK14950 533 VGKTCAVRC 541 (585)
T ss_pred hCCceEEEE
Confidence 466666654
No 244
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=30.53 E-value=1e+02 Score=23.87 Aligned_cols=19 Identities=5% Similarity=-0.011 Sum_probs=15.6
Q ss_pred HHHHHHHhhcCceEEEEEe
Q 008117 143 DFVLSVLKVCGTVKSWKRA 161 (577)
Q Consensus 143 ~~L~~~F~~~G~v~~~~i~ 161 (577)
.+|+.+|+..|.|.-+.|-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5899999999998766653
No 245
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=30.27 E-value=55 Score=38.93 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=22.5
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008117 483 RIREKEEDLADEVREEEEIAVAKRRAEEEQLQ 514 (577)
Q Consensus 483 r~re~e~~~~~r~re~~e~~~~~~~~~~~~~~ 514 (577)
......++.+.|....+.|.+.+++++....+
T Consensus 142 ~~~~l~e~l~~rr~~~e~~~e~k~k~e~~~~~ 173 (997)
T KOG0334|consen 142 IQARLAEELRKRRERVEKWKELKRKEEKEKVV 173 (997)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcchHHhhh
Confidence 33444566777888888898888888775554
No 246
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=29.81 E-value=1.2e+02 Score=33.67 Aligned_cols=17 Identities=6% Similarity=0.327 Sum_probs=8.7
Q ss_pred eEEEEEeCCHHHHHHHH
Q 008117 171 GFGFCEFESAEGVLRAL 187 (577)
Q Consensus 171 g~gFV~f~~~~~A~~Al 187 (577)
-|-+|-.......-+.|
T Consensus 372 EyevvYiKpLAg~Ykti 388 (574)
T PF07462_consen 372 EYEVVYIKPLAGMYKTI 388 (574)
T ss_pred ccceEEecchHHHHHHH
Confidence 35555555555555544
No 247
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=29.55 E-value=5.2e+02 Score=30.13 Aligned_cols=12 Identities=25% Similarity=0.276 Sum_probs=5.3
Q ss_pred cccccccccccc
Q 008117 4 YTVRKVGRLQIL 15 (577)
Q Consensus 4 ~~~~~~~~~~~~ 15 (577)
|.-++.|...++
T Consensus 271 f~YL~rG~t~yF 282 (1259)
T KOG0163|consen 271 FRYLKRGCTQYF 282 (1259)
T ss_pred hhHHhcchhhhc
Confidence 444444444443
No 248
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=29.34 E-value=4.9e+02 Score=26.87 Aligned_cols=18 Identities=11% Similarity=-0.119 Sum_probs=8.9
Q ss_pred CcccccccccccccCCCC
Q 008117 2 NEYTVRKVGRLQILHKRT 19 (577)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (577)
|.+-..-+++++.+..++
T Consensus 233 n~P~~~~~~~p~~~~~ap 250 (389)
T KOG2932|consen 233 NYPPDSDNSRPPGFETAP 250 (389)
T ss_pred cCCCcccCCCCcccccCC
Confidence 334444556666554433
No 249
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=29.31 E-value=1.2e+02 Score=26.52 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=27.4
Q ss_pred CCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHH
Q 008117 140 ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES-AEGVLRALR 188 (577)
Q Consensus 140 ~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~-~~~A~~Al~ 188 (577)
++...|...|..|..+. ++.+.+. ..+.|+++|.|.+ ...-..|+.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 45679999999999876 4444553 3667999999985 455555655
No 250
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=27.27 E-value=51 Score=36.42 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=25.7
Q ss_pred CCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 265 ESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 265 ~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..|..+||.|++|.+...|..|+..|++.
T Consensus 100 e~ggtkG~lf~E~~~~~~A~~aVK~l~G~ 128 (698)
T KOG2314|consen 100 EEGGTKGYLFVEYASMRDAKKAVKSLNGK 128 (698)
T ss_pred ccCCeeeEEEEEecChhhHHHHHHhcccc
Confidence 34558999999999999999999999875
No 251
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=26.74 E-value=85 Score=26.01 Aligned_cols=25 Identities=4% Similarity=0.084 Sum_probs=20.3
Q ss_pred CCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 269 PTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 269 ~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+.+.|+|.|.+.+.|..|...|++.
T Consensus 38 ~~~tAilrF~~~~~A~RA~KRmegE 62 (90)
T PF11608_consen 38 SGGTAILRFPNQEFAERAQKRMEGE 62 (90)
T ss_dssp -TT-EEEEESSHHHHHHHHHHHTT-
T ss_pred eCCEEEEEeCCHHHHHHHHHhhccc
Confidence 3578999999999999999998764
No 252
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=23.86 E-value=45 Score=32.83 Aligned_cols=34 Identities=6% Similarity=0.159 Sum_probs=29.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWK 159 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~ 159 (577)
....+||+-|||..+|++.|..+.+.+|.+..+.
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 4567899999999999999999999999655543
No 253
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=22.78 E-value=2.5e+02 Score=33.60 Aligned_cols=24 Identities=8% Similarity=-0.000 Sum_probs=15.0
Q ss_pred CCHHHHHHHHhhcCceEEEEEeec
Q 008117 140 ADSDFVLSVLKVCGTVKSWKRAQY 163 (577)
Q Consensus 140 ~te~~L~~~F~~~G~v~~~~i~~~ 163 (577)
-..+.+-.+++.||.|....+..+
T Consensus 1151 ~~~~~~~~ll~a~e~vs~~~~~~d 1174 (1195)
T KOG4643|consen 1151 DKEERIDKLLSAYENVSLPQNPPD 1174 (1195)
T ss_pred CChhhccHHHHHhhhccCCCCCCC
Confidence 445566677778887765555443
No 254
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=22.40 E-value=1.2e+02 Score=33.51 Aligned_cols=63 Identities=16% Similarity=-0.099 Sum_probs=37.7
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhhHHHH
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEER 297 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~i~e~ 297 (577)
|..+..|+..+..++++.|++.-...+..+. +-+-+- -=||+|++..+|..|..-|.+.++++
T Consensus 177 IvilREIpettp~e~Vk~lf~~encPk~isc---efa~N~-nWyITfesd~DAQqAykylreevk~f 239 (684)
T KOG2591|consen 177 IVILREIPETTPIEVVKALFKGENCPKVISC---EFAHND-NWYITFESDTDAQQAYKYLREEVKTF 239 (684)
T ss_pred EEEEeecCCCChHHHHHHHhccCCCCCceee---eeeecC-ceEEEeecchhHHHHHHHHHHHHHhh
Confidence 3467778888888888887552111110000 000011 12899999999999988777666554
No 255
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=22.14 E-value=23 Score=39.09 Aligned_cols=16 Identities=44% Similarity=0.528 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 008117 498 EEEIAVAKRRAEEEQL 513 (577)
Q Consensus 498 ~~e~~~~~~~~~~~~~ 513 (577)
.+-+++..++.+++.+
T Consensus 275 ~~~ieed~~~~~~~il 290 (752)
T KOG0670|consen 275 SEIIEEDRRKREEEIL 290 (752)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 3344443444444333
No 256
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=21.97 E-value=1.3e+02 Score=33.98 Aligned_cols=74 Identities=15% Similarity=0.076 Sum_probs=60.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V 202 (577)
..+||+-|-....+..-+..++..++.+...+++.....+...+-+|++|..+..+..|.. |.+..+....+.+
T Consensus 511 ~p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 511 QPTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLKS 584 (681)
T ss_pred CCceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccceec
Confidence 3489999988888888999999999999999999888788888889999999988876665 6777666555554
No 257
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=21.92 E-value=7.3e+02 Score=29.56 Aligned_cols=12 Identities=8% Similarity=-0.128 Sum_probs=5.4
Q ss_pred EEEEeCCHHHHH
Q 008117 173 GFCEFESAEGVL 184 (577)
Q Consensus 173 gFV~f~~~~~A~ 184 (577)
-.+.|.+.-.+.
T Consensus 548 L~L~f~t~~la~ 559 (824)
T PRK07764 548 LVLGFSTGGLAR 559 (824)
T ss_pred EEEecCCHHHHH
Confidence 334455544443
No 258
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=21.74 E-value=1.2e+02 Score=25.78 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=33.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCH
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA 180 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~ 180 (577)
...-||||+++..+-+.--..+...++.-.-+.+.. +....||+|-++-+.
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~---~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWA---TNTESGFEFQTFGEN 76 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEc---CCCCCCcEEEecCCC
Confidence 345699999999888876666666665433333332 234449999887643
No 259
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=21.58 E-value=71 Score=34.20 Aligned_cols=62 Identities=15% Similarity=-0.054 Sum_probs=41.6
Q ss_pred ccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCC-CC-------CceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESH-DP-------TNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~k------s~~~~k~~~~~~~~~g-~~-------kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+.+.||+..-.-+.|.+++. ++.+++-+..-....+ .. +.++||+|+.-..|.+|.+.++..
T Consensus 234 ivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 234 IVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred EEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 47788888887787877744 3334443322222222 22 678999999999999999888543
No 260
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=20.55 E-value=99 Score=32.69 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=48.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEE-EeecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWK-RAQYPSNG--TPKGFGFCEFESAEGVLRALRLLNKFNI 195 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~-i~~~~~tg--~~kg~gFV~f~~~~~A~~Al~~Lng~~i 195 (577)
...|.|.+||+..+...|.+....|-.=+.|. +.....+- .-.+++||.|....+...-...++|++|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 45688899999999999988888776433332 32221111 1246789999999998888888888876
No 261
>PHA01732 proline-rich protein
Probab=20.18 E-value=1.7e+02 Score=24.16 Aligned_cols=6 Identities=17% Similarity=0.097 Sum_probs=2.4
Q ss_pred EEEEEe
Q 008117 156 KSWKRA 161 (577)
Q Consensus 156 ~~~~i~ 161 (577)
.+++|.
T Consensus 65 asLrIp 70 (94)
T PHA01732 65 ASLRIP 70 (94)
T ss_pred ceeEee
Confidence 344443
No 262
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.15 E-value=19 Score=38.34 Aligned_cols=78 Identities=6% Similarity=-0.090 Sum_probs=59.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008117 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (577)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~ 207 (577)
...|+..|+..++..++.-+|.-||.|..+.+...-..|...-.+||.... .++..||.-|.-..+.|-.++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 456777888899999999999999998877665544556666778887654 346677777777777888888877654
Done!