Query 008117
Match_columns 577
No_of_seqs 477 out of 3158
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 18:31:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 99.9 1.1E-23 3.7E-28 205.0 11.1 154 126-293 13-166 (213)
2 1fxl_A Paraneoplastic encephal 99.9 2.2E-22 7.7E-27 186.4 13.9 152 127-293 1-153 (167)
3 1b7f_A Protein (SXL-lethal pro 99.9 1.8E-22 6.2E-27 187.5 13.0 152 127-293 2-154 (168)
4 3md3_A Nuclear and cytoplasmic 99.9 7.6E-22 2.6E-26 182.6 12.9 151 129-293 1-152 (166)
5 2qfj_A FBP-interacting repress 99.9 7E-22 2.4E-26 191.4 12.9 163 127-293 27-190 (216)
6 3nmr_A Cugbp ELAV-like family 99.9 7.6E-22 2.6E-26 184.4 12.1 153 127-293 2-159 (175)
7 1l3k_A Heterogeneous nuclear r 99.9 1.3E-21 4.4E-26 186.6 13.4 154 126-289 11-165 (196)
8 3pgw_S U1-70K; protein-RNA com 99.8 3.4E-21 1.2E-25 206.7 14.5 82 126-207 100-181 (437)
9 2cjk_A Nuclear polyadenylated 99.8 2.5E-21 8.5E-26 179.8 9.5 145 127-288 2-147 (167)
10 1fje_B Nucleolin RBD12, protei 99.8 2.4E-21 8.1E-26 181.6 9.2 150 125-293 10-159 (175)
11 3tyt_A Heterogeneous nuclear r 99.8 3.9E-21 1.3E-25 185.9 9.6 158 127-293 3-188 (205)
12 3smz_A Protein raver-1, ribonu 99.8 3.4E-20 1.2E-24 187.7 16.1 155 127-293 94-249 (284)
13 3sde_A Paraspeckle component 1 99.8 2.7E-20 9.3E-25 186.6 11.9 140 126-292 20-159 (261)
14 3pgw_A U1-A; protein-RNA compl 99.8 8.3E-20 2.8E-24 184.7 14.2 162 125-293 6-267 (282)
15 2ghp_A U4/U6 snRNA-associated 99.8 1.6E-19 5.4E-24 183.6 10.9 157 127-293 116-276 (292)
16 2g4b_A Splicing factor U2AF 65 99.8 1.7E-19 5.8E-24 168.2 9.8 145 127-293 3-159 (172)
17 4fxv_A ELAV-like protein 1; RN 99.8 7.6E-19 2.6E-23 149.6 11.8 82 126-207 17-98 (99)
18 2adc_A Polypyrimidine tract-bi 99.8 2.6E-19 8.8E-24 175.9 10.2 159 126-293 32-212 (229)
19 4f25_A Polyadenylate-binding p 99.8 4.7E-19 1.6E-23 155.1 10.2 109 127-244 4-112 (115)
20 2ghp_A U4/U6 snRNA-associated 99.8 7.1E-19 2.4E-23 178.8 12.4 144 125-293 38-182 (292)
21 3smz_A Protein raver-1, ribonu 99.8 7E-19 2.4E-23 178.1 12.0 139 127-293 21-160 (284)
22 2yh0_A Splicing factor U2AF 65 99.8 2.8E-19 9.5E-24 170.6 6.9 160 127-293 3-179 (198)
23 1qm9_A Polypyrimidine tract-bi 99.8 3.9E-19 1.3E-23 170.1 7.2 157 128-293 3-181 (198)
24 3s8s_A Histone-lysine N-methyl 99.8 8.8E-18 3E-22 145.8 13.3 84 127-210 5-88 (110)
25 2khc_A Testis-specific RNP-typ 99.7 2.4E-17 8.1E-22 144.6 14.3 82 125-206 37-118 (118)
26 3n9u_C Cleavage and polyadenyl 99.7 1.6E-17 5.5E-22 153.3 12.8 83 126-208 53-137 (156)
27 2lkz_A RNA-binding protein 5; 99.7 1.1E-17 3.7E-22 141.2 8.4 83 125-207 6-94 (95)
28 2lxi_A RNA-binding protein 10; 99.7 3.4E-18 1.1E-22 143.2 4.9 81 128-208 1-83 (91)
29 3bs9_A Nucleolysin TIA-1 isofo 99.7 5.2E-17 1.8E-21 134.2 11.6 82 126-207 4-85 (87)
30 3ns6_A Eukaryotic translation 99.7 1.2E-17 4.1E-22 142.4 7.8 86 126-211 4-96 (100)
31 2la6_A RNA-binding protein FUS 99.7 5.2E-17 1.8E-21 137.9 11.7 81 126-206 11-99 (99)
32 3md1_A Nuclear and cytoplasmic 99.7 6E-17 2.1E-21 132.6 11.6 80 128-207 1-80 (83)
33 2e5h_A Zinc finger CCHC-type a 99.7 8.4E-17 2.9E-21 135.1 12.6 81 126-206 14-94 (94)
34 3mdf_A Peptidyl-prolyl CIS-tra 99.7 5.3E-17 1.8E-21 133.6 11.1 81 126-206 5-85 (85)
35 2x1f_A MRNA 3'-END-processing 99.7 6.7E-17 2.3E-21 136.4 11.5 84 127-210 1-84 (96)
36 2cq4_A RNA binding motif prote 99.7 4.7E-17 1.6E-21 141.9 10.5 82 126-208 23-104 (114)
37 1u6f_A Tcubp1, RNA-binding pro 99.7 2.7E-16 9.4E-21 141.9 15.4 83 125-207 39-121 (139)
38 2cqc_A Arginine/serine-rich sp 99.7 1.2E-16 4.3E-21 134.2 12.2 82 126-207 13-94 (95)
39 2cpz_A CUG triplet repeat RNA- 99.7 1.7E-16 5.7E-21 138.6 13.1 82 126-207 23-104 (115)
40 2dgs_A DAZ-associated protein 99.7 1.1E-16 3.7E-21 135.8 11.6 82 125-207 7-88 (99)
41 2dnz_A Probable RNA-binding pr 99.7 1E-16 3.5E-21 134.8 11.2 82 126-207 3-84 (95)
42 1x5u_A Splicing factor 3B subu 99.7 1.2E-16 4E-21 137.1 11.7 83 126-208 13-95 (105)
43 2jrs_A RNA-binding protein 39; 99.7 1.1E-16 3.6E-21 138.5 11.3 83 125-207 23-105 (108)
44 3p5t_L Cleavage and polyadenyl 99.7 2.2E-17 7.4E-22 137.8 6.5 80 129-208 2-83 (90)
45 2dgo_A Cytotoxic granule-assoc 99.7 2.2E-16 7.6E-21 137.7 13.2 84 125-208 12-95 (115)
46 1p27_B RNA-binding protein 8A; 99.7 1.1E-16 3.8E-21 137.5 10.9 82 126-207 21-102 (106)
47 2dnm_A SRP46 splicing factor; 99.7 8.4E-17 2.9E-21 137.6 10.0 83 125-207 10-92 (103)
48 1whw_A Hypothetical protein ri 99.7 1.7E-16 5.9E-21 134.5 11.9 83 126-208 6-88 (99)
49 1oo0_B CG8781-PA, drosophila Y 99.7 1.3E-16 4.5E-21 138.0 11.2 82 126-207 24-105 (110)
50 2cq0_A Eukaryotic translation 99.7 1.7E-16 5.9E-21 135.6 11.7 83 125-207 12-94 (103)
51 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.1E-16 3.7E-21 136.5 10.2 83 126-208 10-92 (102)
52 3ulh_A THO complex subunit 4; 99.7 2.3E-16 7.8E-21 135.8 12.1 80 126-206 27-106 (107)
53 3s7r_A Heterogeneous nuclear r 99.7 2.5E-16 8.4E-21 130.3 11.7 80 125-205 8-87 (87)
54 2do4_A Squamous cell carcinoma 99.7 3.2E-16 1.1E-20 133.2 12.7 81 126-207 15-95 (100)
55 1x5t_A Splicing factor 3B subu 99.7 1.1E-16 3.6E-21 135.0 9.5 82 126-207 3-85 (96)
56 2ywk_A Putative RNA-binding pr 99.7 1.7E-16 5.7E-21 133.5 10.6 81 126-207 14-94 (95)
57 1x4h_A RNA-binding protein 28; 99.7 2.3E-16 7.8E-21 136.6 11.7 82 126-207 13-100 (111)
58 1x5s_A Cold-inducible RNA-bind 99.7 1.6E-16 5.5E-21 135.5 10.4 82 126-207 10-91 (102)
59 2dnh_A Bruno-like 5, RNA bindi 99.7 3E-16 1E-20 134.5 12.1 82 126-208 13-97 (105)
60 2cph_A RNA binding motif prote 99.7 2.4E-16 8.4E-21 135.5 11.5 84 125-208 12-97 (107)
61 2dgp_A Bruno-like 4, RNA bindi 99.7 1.8E-16 6.2E-21 136.2 10.5 83 125-207 10-95 (106)
62 2div_A TRNA selenocysteine ass 99.7 1.8E-16 6.3E-21 134.4 10.3 82 126-207 7-93 (99)
63 2j76_E EIF-4B, EIF4B, eukaryot 99.7 4.7E-17 1.6E-21 138.6 6.4 81 125-207 16-97 (100)
64 2cpf_A RNA binding motif prote 99.7 1.8E-16 6.1E-21 134.2 9.9 82 126-207 3-87 (98)
65 3ucg_A Polyadenylate-binding p 99.7 3.1E-16 1.1E-20 130.1 10.9 79 128-207 6-84 (89)
66 2cpe_A RNA-binding protein EWS 99.7 3E-16 1E-20 136.5 11.1 83 125-207 12-102 (113)
67 1s79_A Lupus LA protein; RRM, 99.7 1.4E-16 4.7E-21 136.5 8.7 80 126-207 9-88 (103)
68 3ex7_B RNA-binding protein 8A; 99.7 2.2E-16 7.4E-21 140.1 10.3 82 126-207 20-101 (126)
69 2dng_A Eukaryotic translation 99.7 4.3E-16 1.5E-20 133.2 11.6 80 126-207 13-92 (103)
70 4a8x_A RNA-binding protein wit 99.7 2.5E-16 8.6E-21 130.3 9.8 81 127-207 3-84 (88)
71 2cqi_A Nucleolysin TIAR; RNA r 99.7 9.1E-16 3.1E-20 131.1 13.3 82 125-208 12-93 (103)
72 2kxn_B Transformer-2 protein h 99.7 2.1E-16 7.4E-21 141.1 9.4 82 126-207 44-125 (129)
73 2d9p_A Polyadenylate-binding p 99.7 4.7E-16 1.6E-20 132.9 11.0 81 125-207 12-92 (103)
74 1wi8_A EIF-4B, eukaryotic tran 99.7 5.4E-16 1.8E-20 132.8 11.1 80 126-207 13-93 (104)
75 2cqp_A RNA-binding protein 12; 99.7 3E-16 1E-20 132.8 9.4 82 126-207 13-94 (98)
76 2fy1_A RNA-binding motif prote 99.7 3.4E-16 1.2E-20 137.1 10.0 82 126-208 5-86 (116)
77 2cqd_A RNA-binding region cont 99.6 8E-16 2.7E-20 134.4 12.4 82 125-207 14-95 (116)
78 2rs2_A Musashi-1, RNA-binding 99.6 3.8E-16 1.3E-20 135.2 10.2 82 125-207 22-103 (109)
79 2dgv_A HnRNP M, heterogeneous 99.6 5.3E-16 1.8E-20 129.6 10.4 80 126-207 6-85 (92)
80 2cq3_A RNA-binding protein 9; 99.6 1.5E-15 5.3E-20 129.7 13.4 81 125-207 12-92 (103)
81 2m2b_A RNA-binding protein 10; 99.6 1.4E-16 4.7E-21 142.6 7.1 82 125-207 20-107 (131)
82 1rk8_A CG8781-PA, CG8781-PA pr 99.6 7.1E-16 2.4E-20 143.6 12.2 83 126-208 70-152 (165)
83 2dgx_A KIAA0430 protein; RRM d 99.6 8E-16 2.7E-20 129.9 11.4 79 126-207 7-89 (96)
84 1p1t_A Cleavage stimulation fa 99.6 2.9E-16 9.9E-21 134.3 8.7 83 126-208 6-88 (104)
85 2err_A Ataxin-2-binding protei 99.6 4.2E-16 1.4E-20 134.9 9.8 81 125-207 26-106 (109)
86 2do0_A HnRNP M, heterogeneous 99.6 1.1E-15 3.9E-20 132.9 12.7 81 126-207 13-93 (114)
87 2dhg_A TRNA selenocysteine ass 99.6 3.8E-16 1.3E-20 133.6 9.4 81 126-207 7-89 (104)
88 2mss_A Protein (musashi1); RNA 99.6 1.9E-16 6.5E-21 127.1 7.0 75 130-205 1-75 (75)
89 2wbr_A GW182, gawky, LD47780P; 99.6 7.3E-16 2.5E-20 126.3 10.5 74 127-206 6-79 (89)
90 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.1E-15 3.8E-20 137.8 12.8 80 126-205 61-140 (140)
91 2nlw_A Eukaryotic translation 99.6 2.3E-16 7.7E-21 135.6 7.8 81 126-208 13-100 (105)
92 1x4e_A RNA binding motif, sing 99.6 9.6E-17 3.3E-21 132.1 5.1 80 126-205 3-82 (85)
93 2dgw_A Probable RNA-binding pr 99.6 1.2E-15 4E-20 127.3 11.8 80 125-207 7-86 (91)
94 2jwn_A Embryonic polyadenylate 99.6 3.1E-16 1.1E-20 138.7 8.5 80 127-207 35-114 (124)
95 2cqg_A TDP-43, TAR DNA-binding 99.6 1.8E-15 6E-20 129.3 13.0 82 125-208 12-93 (103)
96 2ek1_A RNA-binding protein 12; 99.6 2.8E-16 9.6E-21 132.1 7.8 80 127-206 14-93 (95)
97 2kt5_A RNA and export factor-b 99.6 3.8E-15 1.3E-19 131.8 15.2 83 125-208 32-114 (124)
98 2dh8_A DAZ-associated protein 99.6 7.5E-16 2.6E-20 132.1 10.1 82 125-207 13-94 (105)
99 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.4E-15 4.9E-20 140.1 12.6 82 126-207 37-118 (156)
100 2a3j_A U1 small nuclear ribonu 99.6 9.2E-16 3.1E-20 136.4 10.5 81 126-209 27-111 (127)
101 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.7E-16 9.3E-21 126.7 6.2 76 129-205 1-76 (77)
102 1x4a_A Splicing factor, argini 99.6 3.2E-15 1.1E-19 129.1 13.1 80 125-207 19-98 (109)
103 2kn4_A Immunoglobulin G-bindin 99.6 1.6E-15 5.4E-20 139.9 11.9 82 126-207 68-149 (158)
104 2db1_A Heterogeneous nuclear r 99.6 1.1E-15 3.8E-20 134.2 10.3 82 125-208 14-98 (118)
105 1sjq_A Polypyrimidine tract-bi 99.6 9E-16 3.1E-20 131.2 9.1 76 126-207 14-91 (105)
106 1x4b_A Heterogeneous nuclear r 99.6 9.7E-16 3.3E-20 133.9 9.4 82 126-208 25-106 (116)
107 2ki2_A SS-DNA binding protein 99.6 2E-16 6.7E-21 131.7 4.7 79 129-208 2-80 (90)
108 2dis_A Unnamed protein product 99.6 1E-15 3.6E-20 132.0 9.3 83 126-208 6-92 (109)
109 3q2s_C Cleavage and polyadenyl 99.6 9.3E-16 3.2E-20 150.5 10.1 83 127-209 67-151 (229)
110 2cpy_A RNA-binding protein 12; 99.6 1.2E-15 4.2E-20 133.0 9.7 81 126-208 13-94 (114)
111 1x5o_A RNA binding motif, sing 99.6 4.3E-15 1.5E-19 129.3 12.8 82 125-207 22-111 (114)
112 1wel_A RNA-binding protein 12; 99.6 1E-15 3.5E-20 135.5 8.8 82 126-208 23-104 (124)
113 2lea_A Serine/arginine-rich sp 99.6 5.1E-16 1.7E-20 139.7 6.7 82 126-207 45-126 (135)
114 2krb_A Eukaryotic translation 99.6 5.3E-16 1.8E-20 126.6 6.2 73 128-202 1-80 (81)
115 2j8a_A Histone-lysine N-methyl 99.6 1.3E-15 4.6E-20 133.0 9.0 81 129-209 3-97 (136)
116 3pgw_A U1-A; protein-RNA compl 99.6 1.9E-14 6.4E-19 145.3 18.8 77 125-206 204-281 (282)
117 2cq1_A PTB-like protein L; RRM 99.6 4E-15 1.4E-19 126.8 11.5 77 125-207 12-90 (101)
118 1fj7_A Nucleolin RBD1, protein 99.6 3E-16 1E-20 133.6 4.5 80 126-207 15-94 (101)
119 2xnq_A Nuclear polyadenylated 99.6 4.2E-15 1.4E-19 125.8 11.3 75 125-207 19-94 (97)
120 3lqv_A PRE-mRNA branch site pr 99.6 3.5E-15 1.2E-19 130.1 11.0 81 126-209 6-86 (115)
121 1wg5_A Heterogeneous nuclear r 99.6 2.9E-15 1E-19 128.4 10.2 80 126-207 13-93 (104)
122 2cpi_A CCR4-NOT transcription 99.6 1.5E-15 5E-20 131.9 8.3 83 126-208 13-101 (111)
123 1x4c_A Splicing factor, argini 99.6 6.3E-15 2.2E-19 127.1 12.1 75 126-207 13-92 (108)
124 3r27_A HnRNP L, heterogeneous 99.6 3.7E-15 1.3E-19 126.2 10.3 77 125-207 18-96 (100)
125 1wez_A HnRNP H', FTP-3, hetero 99.6 1.6E-15 5.5E-20 129.7 7.9 79 126-207 13-91 (102)
126 1iqt_A AUF1, heterogeneous nuc 99.6 7.5E-16 2.6E-20 123.5 5.4 75 130-205 1-75 (75)
127 2ytc_A PRE-mRNA-splicing facto 99.6 5.8E-15 2E-19 121.3 10.8 76 125-206 9-85 (85)
128 2jvo_A Nucleolar protein 3; nu 99.6 3.6E-15 1.2E-19 128.8 9.9 76 125-208 28-103 (108)
129 2fc9_A NCL protein; structure 99.6 5.9E-15 2E-19 125.5 11.1 80 125-208 12-91 (101)
130 2hvz_A Splicing factor, argini 99.6 1.8E-15 6.3E-20 128.7 7.9 75 129-208 1-75 (101)
131 1nu4_A U1A RNA binding domain; 99.6 1.6E-15 5.5E-20 127.9 7.5 80 126-208 6-89 (97)
132 2cpx_A Hypothetical protein FL 99.6 1.7E-15 5.8E-20 132.0 7.8 83 126-208 23-105 (115)
133 2hgl_A HNRPF protein, heteroge 99.6 2.5E-15 8.5E-20 135.2 9.0 81 126-208 42-125 (136)
134 2lmi_A GRSF-1, G-rich sequence 99.6 1.3E-15 4.4E-20 131.3 6.3 82 125-208 8-92 (107)
135 2dnn_A RNA-binding protein 12; 99.6 6.6E-15 2.2E-19 127.3 10.8 79 127-208 15-93 (109)
136 2fc8_A NCL protein; structure 99.6 7E-15 2.4E-19 125.2 10.8 80 125-207 12-91 (102)
137 2jvr_A Nucleolar protein 3; RN 99.6 5.5E-15 1.9E-19 128.1 9.9 77 127-207 27-104 (111)
138 2dnq_A RNA-binding protein 4B; 99.6 7.7E-15 2.6E-19 122.1 10.4 74 126-207 6-79 (90)
139 1x4d_A Matrin 3; structural ge 99.6 3.9E-15 1.3E-19 127.0 8.5 76 126-207 13-91 (102)
140 2ad9_A Polypyrimidine tract-bi 99.6 4.4E-15 1.5E-19 130.0 8.9 76 126-207 29-106 (119)
141 2f3j_A RNA and export factor b 99.6 1.8E-14 6E-19 135.7 13.6 82 126-208 86-167 (177)
142 2la4_A Nuclear and cytoplasmic 99.6 5.2E-15 1.8E-19 125.9 9.0 75 127-207 26-100 (101)
143 2dgt_A RNA-binding protein 30; 99.6 1.4E-14 4.8E-19 121.0 11.4 75 125-207 7-81 (92)
144 1x4g_A Nucleolysin TIAR; struc 99.6 8.7E-15 3E-19 126.4 10.3 77 126-208 23-99 (109)
145 2e5j_A Methenyltetrahydrofolat 99.6 1E-14 3.5E-19 123.2 10.5 77 126-207 17-93 (97)
146 1why_A Hypothetical protein ri 99.6 1.3E-14 4.3E-19 122.6 11.0 76 126-207 15-92 (97)
147 1fjc_A Nucleolin RBD2, protein 99.6 4.4E-15 1.5E-19 125.0 7.5 78 125-207 13-90 (96)
148 3egn_A RNA-binding protein 40; 99.6 1.7E-15 5.7E-20 137.5 4.9 84 125-208 42-130 (143)
149 2xs2_A Deleted in azoospermia- 99.6 4.1E-15 1.4E-19 126.8 7.0 80 126-208 7-86 (102)
150 2dnp_A RNA-binding protein 14; 99.5 2.1E-14 7.3E-19 119.4 10.6 75 125-207 6-80 (90)
151 3md3_A Nuclear and cytoplasmic 99.5 3.7E-14 1.3E-18 130.6 12.9 81 126-206 85-165 (166)
152 1wex_A Hypothetical protein (r 99.5 1.9E-14 6.4E-19 123.4 10.1 76 126-207 13-90 (104)
153 1whx_A Hypothetical protein ri 99.5 7.6E-15 2.6E-19 127.4 7.6 76 126-207 8-83 (111)
154 2cpj_A Non-POU domain-containi 99.5 1.8E-14 6.2E-19 122.1 9.6 76 126-207 13-88 (99)
155 1wf1_A RNA-binding protein RAL 99.5 2.9E-14 9.8E-19 123.3 11.0 74 126-207 25-99 (110)
156 2lcw_A RNA-binding protein FUS 99.3 5.3E-16 1.8E-20 135.6 0.0 83 126-208 5-95 (116)
157 2e44_A Insulin-like growth fac 99.5 1.7E-14 6E-19 121.3 9.4 79 126-208 13-92 (96)
158 2dgu_A Heterogeneous nuclear r 99.5 3.5E-14 1.2E-18 121.2 11.2 75 126-208 9-83 (103)
159 2cpd_A Apobec-1 stimulating pr 99.5 6E-14 2E-18 118.8 12.2 75 125-207 12-88 (99)
160 2i2y_A Fusion protein consists 99.5 2.5E-14 8.7E-19 130.8 10.3 77 126-207 71-147 (150)
161 1x4f_A Matrin 3; structural ge 99.5 3E-14 1E-18 123.4 9.9 77 125-207 22-101 (112)
162 2kvi_A Nuclear polyadenylated 99.5 1.7E-14 5.9E-19 121.6 8.0 74 126-207 8-82 (96)
163 2g4b_A Splicing factor U2AF 65 99.5 5.8E-14 2E-18 130.4 11.7 79 127-205 93-171 (172)
164 2e5g_A U6 snRNA-specific termi 99.5 4.1E-14 1.4E-18 118.7 9.5 76 126-207 6-81 (94)
165 2dha_A FLJ20171 protein; RRM d 99.5 1.9E-14 6.6E-19 127.1 7.6 80 126-207 21-104 (123)
166 2hgm_A HNRPF protein, heteroge 99.5 2.2E-14 7.6E-19 127.1 7.8 79 126-207 40-120 (126)
167 2cqh_A IGF-II mRNA-binding pro 99.5 4.1E-14 1.4E-18 118.3 8.9 75 126-207 6-82 (93)
168 1wg1_A KIAA1579 protein, homol 99.5 4.1E-14 1.4E-18 117.2 8.5 74 127-207 4-77 (88)
169 2hgn_A Heterogeneous nuclear r 99.5 8.1E-15 2.8E-19 132.3 4.2 79 126-207 44-122 (139)
170 1x5p_A Negative elongation fac 99.5 1.4E-13 4.9E-18 116.1 11.6 74 126-207 13-86 (97)
171 4f02_A Polyadenylate-binding p 99.5 1E-13 3.5E-18 134.3 12.0 81 127-209 102-182 (213)
172 3beg_B Splicing factor, argini 99.5 3.8E-14 1.3E-18 123.7 7.7 74 126-206 14-92 (115)
173 2qfj_A FBP-interacting repress 99.5 9.1E-14 3.1E-18 134.1 11.1 83 126-208 123-205 (216)
174 2cq2_A Hypothetical protein LO 99.5 7E-14 2.4E-18 121.2 9.0 76 126-207 23-105 (114)
175 3d2w_A TAR DNA-binding protein 99.5 1.1E-13 3.8E-18 115.1 9.8 74 126-208 9-84 (89)
176 2diu_A KIAA0430 protein; struc 99.5 1.1E-13 3.6E-18 114.5 8.8 71 128-208 9-84 (96)
177 1sjr_A Polypyrimidine tract-bi 99.5 1.5E-13 5.2E-18 126.5 10.8 78 127-208 45-124 (164)
178 2yh0_A Splicing factor U2AF 65 99.5 2.4E-13 8.1E-18 129.3 12.4 82 126-207 112-193 (198)
179 3pgw_S U1-70K; protein-RNA com 99.5 6.9E-16 2.4E-20 165.4 -6.4 64 230-293 103-167 (437)
180 3zzy_A Polypyrimidine tract-bi 99.5 2.5E-13 8.5E-18 120.5 11.1 77 127-208 27-106 (130)
181 2hzc_A Splicing factor U2AF 65 99.5 1.5E-13 5.1E-18 113.2 9.1 71 126-203 4-85 (87)
182 2cjk_A Nuclear polyadenylated 99.5 6.5E-14 2.2E-18 129.5 7.7 80 127-207 86-165 (167)
183 2dnl_A Cytoplasmic polyadenyla 99.5 1.2E-13 4.1E-18 120.3 8.8 78 126-206 6-86 (114)
184 1b7f_A Protein (SXL-lethal pro 99.5 3E-13 1E-17 125.0 11.8 79 127-205 88-168 (168)
185 1l3k_A Heterogeneous nuclear r 99.5 2.4E-13 8.3E-18 129.0 11.3 81 127-208 103-183 (196)
186 2pe8_A Splicing factor 45; RRM 99.4 5.2E-13 1.8E-17 114.6 11.9 82 126-207 6-93 (105)
187 2e5i_A Heterogeneous nuclear r 99.4 4.8E-13 1.7E-17 118.0 11.2 75 128-208 25-102 (124)
188 1fxl_A Paraneoplastic encephal 99.4 3.8E-13 1.3E-17 123.9 10.9 79 127-205 87-167 (167)
189 2bz2_A Negative elongation fac 99.4 3.4E-13 1.2E-17 118.8 8.9 75 126-208 37-111 (121)
190 3nmr_A Cugbp ELAV-like family 99.4 4.5E-13 1.5E-17 124.5 10.2 79 127-206 94-175 (175)
191 2voo_A Lupus LA protein; RNA-b 99.4 7.3E-13 2.5E-17 126.4 11.0 79 127-207 108-186 (193)
192 1wf0_A TDP-43, TAR DNA-binding 99.4 3.3E-13 1.1E-17 111.6 5.6 75 126-207 3-77 (88)
193 1fje_B Nucleolin RBD12, protei 99.4 1.4E-12 4.7E-17 121.6 9.7 77 126-207 97-173 (175)
194 3u1l_A PRE-mRNA-splicing facto 99.4 9E-13 3.1E-17 129.2 8.4 78 125-208 131-229 (240)
195 3tyt_A Heterogeneous nuclear r 99.3 2E-12 6.9E-17 124.5 8.7 78 126-205 121-204 (205)
196 3v4m_A Splicing factor U2AF 65 99.3 8.6E-12 2.9E-16 106.9 9.4 83 126-208 3-97 (105)
197 2dit_A HIV TAT specific factor 99.3 1.2E-11 4.1E-16 107.2 9.9 78 126-207 13-101 (112)
198 1jmt_A Splicing factor U2AF 35 99.3 2.8E-12 9.7E-17 109.7 4.9 72 133-205 20-103 (104)
199 3sde_A Paraspeckle component 1 99.3 1.5E-11 5E-16 122.9 10.7 80 127-207 95-178 (261)
200 1qm9_A Polypyrimidine tract-bi 99.3 1.4E-11 4.8E-16 117.3 9.9 77 126-207 118-196 (198)
201 3ue2_A Poly(U)-binding-splicin 99.2 2E-11 6.9E-16 106.8 9.4 81 127-207 19-108 (118)
202 2adc_A Polypyrimidine tract-bi 99.2 2.7E-11 9.2E-16 118.5 9.8 77 126-207 149-227 (229)
203 3tht_A Alkylated DNA repair pr 99.1 1.1E-10 3.9E-15 120.2 9.8 77 125-207 15-98 (345)
204 2kn4_A Immunoglobulin G-bindin 99.1 3.2E-11 1.1E-15 110.9 4.7 131 157-293 2-135 (158)
205 2d9o_A DNAJ (HSP40) homolog, s 99.1 5.9E-10 2E-14 94.4 10.5 63 138-207 27-89 (100)
206 3s6e_A RNA-binding protein 39; 99.0 1.1E-09 3.6E-14 95.2 10.1 77 127-207 6-92 (114)
207 2i2y_A Fusion protein consists 99.0 1.5E-10 5E-15 105.6 2.1 129 158-293 3-133 (150)
208 2dnr_A Synaptojanin-1; RRM dom 98.9 2.7E-09 9.1E-14 87.4 8.0 73 126-207 5-85 (91)
209 1owx_A Lupus LA protein, SS-B, 98.9 8.9E-09 3E-13 89.7 10.2 87 125-217 15-107 (121)
210 1ufw_A Synaptojanin 2; RNP dom 98.7 2.2E-08 7.4E-13 82.4 6.8 70 126-204 13-91 (95)
211 3dxb_A Thioredoxin N-terminall 98.5 1.6E-07 5.3E-12 91.1 8.5 69 139-207 140-212 (222)
212 2lkz_A RNA-binding protein 5; 98.3 4.3E-07 1.5E-11 76.0 4.4 65 229-293 9-76 (95)
213 2lxi_A RNA-binding protein 10; 98.2 3.5E-07 1.2E-11 75.7 2.6 62 230-291 2-65 (91)
214 2lea_A Serine/arginine-rich sp 98.2 1.8E-07 6E-12 83.6 0.7 107 171-293 5-112 (135)
215 3p5t_L Cleavage and polyadenyl 98.1 2.6E-07 9E-12 76.2 -0.3 62 232-293 4-68 (90)
216 2l9w_A U4/U6 snRNA-associated- 98.1 1.4E-05 4.9E-10 67.0 10.0 74 126-205 19-97 (117)
217 4fxv_A ELAV-like protein 1; RN 98.1 5.8E-07 2E-11 75.7 1.5 62 232-293 22-84 (99)
218 1rk8_A CG8781-PA, CG8781-PA pr 98.1 6.4E-07 2.2E-11 82.7 1.6 119 175-293 11-137 (165)
219 1x4e_A RNA binding motif, sing 98.1 5.3E-06 1.8E-10 67.2 6.3 64 230-293 6-70 (85)
220 3s8s_A Histone-lysine N-methyl 98.1 1.4E-06 4.8E-11 74.8 2.9 64 230-293 7-71 (110)
221 3ns6_A Eukaryotic translation 97.9 1.9E-06 6.4E-11 72.5 1.2 65 229-293 6-77 (100)
222 2dnn_A RNA-binding protein 12; 97.9 6.5E-06 2.2E-10 70.6 4.1 60 231-292 18-77 (109)
223 2fc8_A NCL protein; structure 97.9 6.9E-06 2.4E-10 69.0 4.1 63 229-293 15-77 (102)
224 2dnl_A Cytoplasmic polyadenyla 97.9 7.7E-06 2.6E-10 70.4 4.3 63 231-293 10-75 (114)
225 2hgn_A Heterogeneous nuclear r 97.9 2.7E-06 9.2E-11 76.3 1.4 106 171-292 2-107 (139)
226 2cqb_A Peptidyl-prolyl CIS-tra 97.9 1.2E-05 4E-10 67.5 4.7 65 229-293 12-77 (102)
227 2cpe_A RNA-binding protein EWS 97.8 1.1E-05 3.7E-10 69.2 4.4 64 230-293 16-88 (113)
228 2dnh_A Bruno-like 5, RNA bindi 97.8 4.8E-06 1.6E-10 70.4 2.1 65 229-293 15-79 (105)
229 1x5t_A Splicing factor 3B subu 97.8 7.6E-06 2.6E-10 67.8 3.3 63 231-293 7-71 (96)
230 2lmi_A GRSF-1, G-rich sequence 97.8 9.7E-06 3.3E-10 69.0 4.0 62 230-292 12-76 (107)
231 2x1f_A MRNA 3'-END-processing 97.8 7E-06 2.4E-10 68.2 3.1 63 231-293 4-67 (96)
232 1s79_A Lupus LA protein; RRM, 97.8 4E-06 1.4E-10 71.1 1.5 60 231-291 13-72 (103)
233 2cq0_A Eukaryotic translation 97.8 1E-05 3.4E-10 68.2 4.0 65 229-293 15-80 (103)
234 2fy1_A RNA-binding motif prote 97.8 6E-06 2.1E-10 71.4 2.6 63 231-293 9-71 (116)
235 2d9p_A Polyadenylate-binding p 97.8 9.1E-06 3.1E-10 68.4 3.7 62 231-293 17-78 (103)
236 2krb_A Eukaryotic translation 97.8 3.5E-06 1.2E-10 67.7 1.0 61 232-293 4-70 (81)
237 2j76_E EIF-4B, EIF4B, eukaryot 97.8 1E-05 3.5E-10 67.9 3.9 61 231-293 21-83 (100)
238 1whw_A Hypothetical protein ri 97.8 9.1E-06 3.1E-10 67.8 3.4 64 230-293 9-73 (99)
239 2dnz_A Probable RNA-binding pr 97.8 1.2E-05 4.2E-10 66.4 4.2 63 231-293 7-70 (95)
240 1wg5_A Heterogeneous nuclear r 97.8 8.1E-06 2.8E-10 69.1 3.0 60 230-289 16-76 (104)
241 2m2b_A RNA-binding protein 10; 97.8 6.8E-06 2.3E-10 72.7 2.6 62 229-293 23-89 (131)
242 2do4_A Squamous cell carcinoma 97.8 7E-06 2.4E-10 68.7 2.5 65 229-293 17-81 (100)
243 2ek1_A RNA-binding protein 12; 97.8 1E-05 3.5E-10 66.9 3.5 63 231-293 17-80 (95)
244 2la6_A RNA-binding protein FUS 97.8 7.9E-06 2.7E-10 68.3 2.8 65 229-293 13-86 (99)
245 2cqp_A RNA-binding protein 12; 97.8 1.1E-05 3.6E-10 67.3 3.5 64 230-293 16-80 (98)
246 4f25_A Polyadenylate-binding p 97.8 2.9E-06 9.9E-11 73.3 0.0 61 232-293 8-68 (115)
247 2fc9_A NCL protein; structure 97.8 1.6E-05 5.6E-10 66.6 4.6 62 229-293 15-76 (101)
248 2cpy_A RNA-binding protein 12; 97.8 1E-05 3.5E-10 69.7 3.3 60 230-289 16-76 (114)
249 2kxn_B Transformer-2 protein h 97.8 1.6E-05 5.5E-10 70.2 4.6 66 228-293 45-111 (129)
250 2e5h_A Zinc finger CCHC-type a 97.8 1.8E-05 6E-10 65.3 4.6 65 229-293 16-81 (94)
251 2dgp_A Bruno-like 4, RNA bindi 97.8 1.6E-05 5.3E-10 67.3 4.0 62 230-293 14-78 (106)
252 2hgm_A HNRPF protein, heteroge 97.8 6.5E-06 2.2E-10 72.4 1.7 62 230-291 43-105 (126)
253 1x5o_A RNA binding motif, sing 97.8 1.2E-05 4.1E-10 69.0 3.2 64 231-294 27-90 (114)
254 3md1_A Nuclear and cytoplasmic 97.8 9.3E-06 3.2E-10 65.3 2.4 62 232-293 4-66 (83)
255 3n9u_C Cleavage and polyadenyl 97.8 4.3E-06 1.5E-10 76.5 0.3 62 232-293 58-122 (156)
256 1wez_A HnRNP H', FTP-3, hetero 97.7 6.7E-06 2.3E-10 69.5 1.5 61 230-292 16-76 (102)
257 1wel_A RNA-binding protein 12; 97.7 6.1E-06 2.1E-10 72.2 1.2 62 230-292 26-88 (124)
258 2do0_A HnRNP M, heterogeneous 97.7 8.8E-06 3E-10 69.8 2.2 65 229-293 15-79 (114)
259 2dng_A Eukaryotic translation 97.7 8.3E-06 2.8E-10 68.7 1.9 64 229-293 15-78 (103)
260 2hgl_A HNRPF protein, heteroge 97.7 8.1E-06 2.8E-10 72.9 1.9 62 230-292 45-109 (136)
261 2dgs_A DAZ-associated protein 97.7 1.6E-05 5.3E-10 66.4 3.5 63 230-293 11-74 (99)
262 2db1_A Heterogeneous nuclear r 97.7 8.7E-06 3E-10 70.7 2.0 62 230-292 18-82 (118)
263 1wi8_A EIF-4B, eukaryotic tran 97.7 1.6E-05 5.3E-10 67.1 3.5 62 230-293 16-79 (104)
264 2cph_A RNA binding motif prote 97.7 1.6E-05 5.3E-10 67.3 3.5 64 229-292 15-81 (107)
265 3ulh_A THO complex subunit 4; 97.7 7E-06 2.4E-10 69.6 1.2 65 229-293 29-93 (107)
266 3mdf_A Peptidyl-prolyl CIS-tra 97.7 1E-05 3.5E-10 65.4 2.0 64 230-293 8-72 (85)
267 1oo0_B CG8781-PA, drosophila Y 97.7 1.3E-05 4.3E-10 68.4 2.7 65 229-293 26-91 (110)
268 1x5u_A Splicing factor 3B subu 97.7 1.1E-05 3.8E-10 68.0 2.4 64 230-293 16-80 (105)
269 2dnm_A SRP46 splicing factor; 97.7 1.5E-05 5.2E-10 67.0 3.2 65 229-293 13-78 (103)
270 2nlw_A Eukaryotic translation 97.7 7E-06 2.4E-10 69.6 1.1 64 229-293 15-84 (105)
271 1x4h_A RNA-binding protein 28; 97.7 1.5E-05 5E-10 68.0 3.1 63 229-291 15-78 (111)
272 2dhg_A TRNA selenocysteine ass 97.7 7.6E-06 2.6E-10 69.0 1.0 64 230-293 10-74 (104)
273 3bs9_A Nucleolysin TIA-1 isofo 97.7 9.8E-06 3.3E-10 65.8 1.6 62 232-293 9-71 (87)
274 2cpz_A CUG triplet repeat RNA- 97.7 1.2E-05 4E-10 69.3 2.1 64 230-293 26-90 (115)
275 1fj7_A Nucleolin RBD1, protein 97.7 4.8E-06 1.6E-10 69.9 -0.3 62 231-293 19-80 (101)
276 1x5s_A Cold-inducible RNA-bind 97.7 2.1E-05 7.3E-10 65.9 3.7 62 230-293 13-77 (102)
277 2cqc_A Arginine/serine-rich sp 97.7 1.3E-05 4.3E-10 66.3 2.0 66 228-293 14-80 (95)
278 1x4f_A Matrin 3; structural ge 97.7 3.5E-05 1.2E-09 66.2 4.9 60 228-292 24-84 (112)
279 2kt5_A RNA and export factor-b 97.7 1.9E-05 6.4E-10 68.9 3.2 64 230-293 36-99 (124)
280 3ex7_B RNA-binding protein 8A; 97.7 2.2E-05 7.7E-10 68.5 3.6 65 229-293 22-87 (126)
281 1uaw_A Mouse-musashi-1; RNP-ty 97.7 1.3E-05 4.5E-10 63.4 1.8 60 232-291 3-63 (77)
282 2cpi_A CCR4-NOT transcription 97.7 2.9E-05 9.8E-10 66.5 4.1 64 230-293 16-86 (111)
283 1x4a_A Splicing factor, argini 97.6 1.9E-05 6.4E-10 67.2 2.8 63 229-293 22-84 (109)
284 2mss_A Protein (musashi1); RNA 97.6 2.2E-05 7.6E-10 61.8 3.0 57 232-288 2-59 (75)
285 2cq4_A RNA binding motif prote 97.6 1.4E-05 4.9E-10 68.5 2.0 62 231-293 27-89 (114)
286 1p27_B RNA-binding protein 8A; 97.6 1.2E-05 4.2E-10 67.9 1.5 64 230-293 24-88 (106)
287 2khc_A Testis-specific RNP-typ 97.6 1.6E-05 5.4E-10 68.7 2.2 62 232-293 43-105 (118)
288 2wbr_A GW182, gawky, LD47780P; 97.6 9.3E-06 3.2E-10 66.3 0.6 57 232-293 10-66 (89)
289 2div_A TRNA selenocysteine ass 97.6 1E-05 3.5E-10 67.5 0.8 62 230-293 10-75 (99)
290 2ywk_A Putative RNA-binding pr 97.6 9.8E-06 3.3E-10 67.0 0.6 64 230-293 17-80 (95)
291 2dgw_A Probable RNA-binding pr 97.6 1.2E-05 4.1E-10 66.0 1.1 61 231-293 12-72 (91)
292 1fjc_A Nucleolin RBD2, protein 97.6 1.1E-05 3.7E-10 66.9 0.8 60 230-293 17-76 (96)
293 2cq3_A RNA-binding protein 9; 97.6 2.7E-05 9.3E-10 65.4 3.3 63 230-293 16-78 (103)
294 2dgv_A HnRNP M, heterogeneous 97.6 1.6E-05 5.5E-10 65.3 1.7 62 231-293 10-71 (92)
295 2rs2_A Musashi-1, RNA-binding 97.6 1.9E-05 6.6E-10 67.4 2.2 63 230-292 26-89 (109)
296 2dgo_A Cytotoxic granule-assoc 97.6 1.5E-05 5E-10 68.5 1.4 64 230-293 16-80 (115)
297 2jrs_A RNA-binding protein 39; 97.6 1.8E-05 6.2E-10 67.5 1.9 65 229-293 26-91 (108)
298 2cq1_A PTB-like protein L; RRM 97.6 4.8E-05 1.6E-09 64.1 4.5 61 227-292 13-73 (101)
299 2cqd_A RNA-binding region cont 97.6 1.8E-05 6E-10 68.2 1.7 67 230-296 18-85 (116)
300 1x4d_A Matrin 3; structural ge 97.6 4.8E-05 1.6E-09 64.3 4.3 60 228-292 14-74 (102)
301 3r27_A HnRNP L, heterogeneous 97.6 2.5E-05 8.6E-10 65.7 2.4 62 227-293 19-80 (100)
302 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.6 3.3E-05 1.1E-09 68.6 3.2 65 229-293 63-128 (140)
303 2err_A Ataxin-2-binding protei 97.6 3.6E-05 1.2E-09 65.6 3.3 64 229-293 29-92 (109)
304 2ad9_A Polypyrimidine tract-bi 97.5 3.4E-05 1.2E-09 67.0 3.1 61 227-292 29-89 (119)
305 3q2s_C Cleavage and polyadenyl 97.5 8.3E-06 2.9E-10 79.4 -1.0 62 232-293 71-135 (229)
306 1sjq_A Polypyrimidine tract-bi 97.5 2E-05 6.9E-10 66.9 1.5 58 230-292 17-74 (105)
307 2cpx_A Hypothetical protein FL 97.5 1.9E-05 6.6E-10 67.7 1.3 65 229-293 25-90 (115)
308 2jvr_A Nucleolar protein 3; RN 97.5 4.2E-05 1.4E-09 65.6 3.4 59 232-293 31-90 (111)
309 2a3j_A U1 small nuclear ribonu 97.5 2E-05 6.7E-10 69.5 1.3 63 229-293 29-95 (127)
310 1p1t_A Cleavage stimulation fa 97.5 1.3E-05 4.5E-10 67.4 0.1 63 231-293 10-73 (104)
311 2dha_A FLJ20171 protein; RRM d 97.5 1.4E-05 4.7E-10 70.1 0.2 59 231-289 25-87 (123)
312 2lcw_A RNA-binding protein FUS 96.7 1.3E-05 4.4E-10 69.1 0.0 63 231-293 9-80 (116)
313 1h2v_Z 20 kDa nuclear CAP bind 97.5 2.5E-05 8.6E-10 71.0 1.8 66 228-293 38-104 (156)
314 3ucg_A Polyadenylate-binding p 97.5 2.1E-05 7.1E-10 64.1 0.8 61 232-293 9-70 (89)
315 3lqv_A PRE-mRNA branch site pr 97.5 3.9E-05 1.3E-09 65.8 2.5 63 229-293 8-70 (115)
316 2cpf_A RNA binding motif prote 97.5 1.7E-05 5.9E-10 65.9 0.2 62 230-293 6-73 (98)
317 2ki2_A SS-DNA binding protein 97.5 3.2E-05 1.1E-09 63.2 1.7 59 232-293 4-65 (90)
318 2cqg_A TDP-43, TAR DNA-binding 97.5 1.8E-05 6.1E-10 66.5 0.1 60 230-289 16-76 (103)
319 1wex_A Hypothetical protein (r 97.5 6E-05 2.1E-09 63.8 3.3 61 227-292 13-73 (104)
320 2dh8_A DAZ-associated protein 97.5 2.5E-05 8.6E-10 65.9 0.9 62 230-292 17-79 (105)
321 1u6f_A Tcubp1, RNA-binding pro 97.5 1.7E-05 5.7E-10 70.7 -0.2 61 231-293 44-107 (139)
322 1wey_A Calcipressin 1; structu 97.4 0.0002 6.8E-09 59.9 6.2 75 127-207 4-83 (104)
323 3egn_A RNA-binding protein 40; 97.4 1.9E-05 6.5E-10 70.7 0.0 65 229-293 45-115 (143)
324 3s7r_A Heterogeneous nuclear r 97.4 4E-05 1.4E-09 62.2 2.0 61 229-289 11-72 (87)
325 2dis_A Unnamed protein product 97.4 2.7E-05 9.2E-10 66.1 0.8 60 231-291 10-73 (109)
326 2f3j_A RNA and export factor b 97.4 3.6E-05 1.2E-09 71.8 1.7 62 232-293 91-152 (177)
327 2cqi_A Nucleolysin TIAR; RNA r 97.4 4.2E-05 1.4E-09 64.3 1.8 58 229-293 15-78 (103)
328 2dgx_A KIAA0430 protein; RRM d 97.4 4E-05 1.4E-09 63.6 1.3 60 232-293 12-75 (96)
329 1nu4_A U1A RNA binding domain; 97.4 2.3E-05 8E-10 64.9 -0.2 62 230-293 9-74 (97)
330 1x4b_A Heterogeneous nuclear r 97.4 8.1E-05 2.8E-09 64.0 3.2 59 231-289 29-88 (116)
331 4a8x_A RNA-binding protein wit 97.4 4.7E-05 1.6E-09 61.7 1.5 62 232-293 7-70 (88)
332 1iqt_A AUF1, heterogeneous nuc 97.4 4.4E-05 1.5E-09 60.0 1.2 56 232-289 2-60 (75)
333 2e5j_A Methenyltetrahydrofolat 97.3 4.7E-05 1.6E-09 63.3 1.3 60 230-293 20-79 (97)
334 1wg1_A KIAA1579 protein, homol 97.3 8.4E-05 2.9E-09 60.5 2.6 56 232-293 8-63 (88)
335 2jwn_A Embryonic polyadenylate 97.3 2.8E-05 9.4E-10 67.8 -0.4 62 231-293 38-100 (124)
336 2la4_A Nuclear and cytoplasmic 97.3 6.9E-05 2.4E-09 62.6 1.9 58 231-293 29-86 (101)
337 3beg_B Splicing factor, argini 97.3 6.4E-05 2.2E-09 64.8 1.5 56 232-293 19-74 (115)
338 2cq2_A Hypothetical protein LO 97.3 5.7E-05 1.9E-09 65.0 1.1 62 227-293 23-86 (114)
339 1why_A Hypothetical protein ri 97.3 0.00011 3.8E-09 60.9 2.6 60 229-293 17-76 (97)
340 1whx_A Hypothetical protein ri 97.2 0.00011 3.8E-09 62.8 2.5 58 231-293 12-69 (111)
341 2jvo_A Nucleolar protein 3; nu 97.2 0.00015 5E-09 61.7 3.2 58 229-293 31-88 (108)
342 2cpj_A Non-POU domain-containi 97.2 0.00016 5.3E-09 60.2 3.0 59 230-293 16-74 (99)
343 1x4c_A Splicing factor, argini 97.2 8.2E-05 2.8E-09 63.2 1.2 57 231-293 17-73 (108)
344 2cqh_A IGF-II mRNA-binding pro 97.2 7.2E-05 2.5E-09 61.5 0.6 56 231-292 10-66 (93)
345 2hvz_A Splicing factor, argini 97.2 9.1E-05 3.1E-09 61.9 1.2 55 232-293 3-60 (101)
346 2xnq_A Nuclear polyadenylated 97.2 0.00013 4.6E-09 60.6 2.2 58 229-293 22-80 (97)
347 2kvi_A Nuclear polyadenylated 97.1 0.00016 5.6E-09 59.8 2.4 58 229-293 10-68 (96)
348 2xs2_A Deleted in azoospermia- 97.1 1.9E-05 6.3E-10 66.3 -3.6 57 232-288 12-68 (102)
349 2dnq_A RNA-binding protein 4B; 97.1 0.00014 4.7E-09 59.4 1.5 56 231-293 10-65 (90)
350 2cpd_A Apobec-1 stimulating pr 97.1 0.00014 4.8E-09 60.5 1.5 58 229-293 15-74 (99)
351 3d2w_A TAR DNA-binding protein 97.1 0.00026 8.9E-09 57.9 3.1 52 230-285 12-63 (89)
352 1wf1_A RNA-binding protein RAL 97.0 0.00015 5.2E-09 61.6 1.0 56 231-293 29-85 (110)
353 2voo_A Lupus LA protein; RNA-b 97.0 0.00015 5.2E-09 68.5 0.9 108 179-292 63-172 (193)
354 2dgt_A RNA-binding protein 30; 97.0 0.00033 1.1E-08 57.4 2.8 57 230-293 11-67 (92)
355 2e5g_A U6 snRNA-specific termi 97.0 0.00026 8.8E-09 58.3 2.0 58 231-293 10-67 (94)
356 2dgu_A Heterogeneous nuclear r 96.9 0.00019 6.5E-09 60.2 1.2 57 230-293 12-68 (103)
357 1x4g_A Nucleolysin TIAR; struc 96.9 0.00015 5.3E-09 61.5 0.5 58 231-293 27-84 (109)
358 2j8a_A Histone-lysine N-methyl 96.9 9.6E-05 3.3E-09 64.6 -1.3 48 232-279 5-57 (136)
359 1wf0_A TDP-43, TAR DNA-binding 96.9 0.00043 1.5E-08 56.2 2.5 52 231-286 7-58 (88)
360 2hzc_A Splicing factor U2AF 65 96.9 0.00015 5E-09 58.7 -0.4 62 231-293 8-75 (87)
361 2ytc_A PRE-mRNA-splicing facto 96.9 0.00024 8.4E-09 57.1 1.0 58 230-292 13-71 (85)
362 2dnp_A RNA-binding protein 14; 96.8 0.00031 1E-08 57.3 1.2 57 230-293 10-66 (90)
363 1uw4_A UPF3X; nonsense mediate 96.8 0.0045 1.6E-07 50.7 8.1 68 129-196 2-71 (91)
364 1x5p_A Negative elongation fac 96.8 0.00059 2E-08 56.4 2.7 57 230-293 16-72 (97)
365 1sjr_A Polypyrimidine tract-bi 96.7 0.00028 9.6E-09 64.6 0.4 59 232-293 49-107 (164)
366 3tht_A Alkylated DNA repair pr 96.7 0.0005 1.7E-08 70.7 2.3 63 226-293 15-79 (345)
367 3zzy_A Polypyrimidine tract-bi 96.6 0.00063 2.2E-08 59.9 1.9 58 232-293 31-89 (130)
368 1whv_A Poly(A)-specific ribonu 96.6 0.0093 3.2E-07 49.0 8.6 54 128-190 16-69 (100)
369 2diu_A KIAA0430 protein; struc 96.6 0.00088 3E-08 55.2 2.4 53 232-293 12-69 (96)
370 2e5i_A Heterogeneous nuclear r 96.6 0.00083 2.8E-08 58.7 2.4 57 232-293 28-85 (124)
371 2bz2_A Negative elongation fac 96.5 0.0011 3.6E-08 57.7 2.9 57 230-293 40-96 (121)
372 2d9o_A DNAJ (HSP40) homolog, s 96.5 0.00049 1.7E-08 57.7 0.2 53 239-295 27-79 (100)
373 2dhx_A Poly (ADP-ribose) polym 96.3 0.019 6.6E-07 47.7 8.7 69 126-203 6-79 (104)
374 2pe8_A Splicing factor 45; RRM 96.2 0.0021 7.2E-08 54.3 2.6 28 266-293 52-79 (105)
375 3u1l_A PRE-mRNA-splicing facto 96.2 0.0013 4.4E-08 64.1 1.4 59 230-293 135-202 (240)
376 1jmt_A Splicing factor U2AF 35 96.1 0.00069 2.4E-08 57.2 -0.8 30 264-293 62-91 (104)
377 1wwh_A Nucleoporin 35, nucleop 95.8 0.028 9.6E-07 48.2 8.0 70 127-204 23-93 (119)
378 3ctr_A Poly(A)-specific ribonu 95.8 0.011 3.6E-07 48.8 4.9 54 129-191 7-60 (101)
379 3v4m_A Splicing factor U2AF 65 95.7 0.0073 2.5E-07 50.9 4.1 27 267-293 56-82 (105)
380 2dit_A HIV TAT specific factor 95.6 0.0055 1.9E-07 52.1 2.7 25 269-293 63-87 (112)
381 2e44_A Insulin-like growth fac 95.4 0.0023 7.9E-08 52.5 -0.5 61 231-293 17-77 (96)
382 2l08_A Regulator of nonsense t 94.7 0.034 1.2E-06 45.8 4.6 69 128-196 9-79 (97)
383 3p3d_A Nucleoporin 53; structu 94.1 0.064 2.2E-06 46.6 5.4 76 128-205 7-96 (132)
384 3ue2_A Poly(U)-binding-splicin 93.8 0.032 1.1E-06 48.0 2.9 28 266-293 67-94 (118)
385 3pq1_A Poly(A) RNA polymerase; 92.2 0.082 2.8E-06 56.1 3.8 55 128-188 53-107 (464)
386 1owx_A Lupus LA protein, SS-B, 92.0 0.1 3.5E-06 45.0 3.4 55 231-290 20-76 (121)
387 3s6e_A RNA-binding protein 39; 91.7 0.11 3.8E-06 44.3 3.4 25 269-293 54-78 (114)
388 3dxb_A Thioredoxin N-terminall 86.7 0.37 1.3E-05 45.7 3.3 30 264-293 169-198 (222)
389 3d45_A Poly(A)-specific ribonu 80.6 3.5 0.00012 44.3 8.1 55 128-191 440-494 (507)
390 2dnr_A Synaptojanin-1; RRM dom 52.4 5.3 0.00018 32.3 1.5 21 272-293 51-71 (91)
391 2g0c_A ATP-dependent RNA helic 48.5 34 0.0012 25.9 5.7 67 130-205 2-74 (76)
392 1ufw_A Synaptojanin 2; RNP dom 42.8 12 0.00042 30.4 2.3 20 273-293 61-80 (95)
393 4e8u_A Putative uncharacterize 25.9 2E+02 0.007 25.8 7.6 46 140-188 33-81 (172)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.89 E-value=1.1e-23 Score=204.96 Aligned_cols=154 Identities=18% Similarity=0.256 Sum_probs=123.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||||||+++|+++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..||..||+..+.|+.|.|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008117 206 QATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQE 285 (577)
Q Consensus 206 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~ 285 (577)
........ .. ...+||+||+..+++.+|.+++..++........ ...+.++|||||.|.+.++|.+
T Consensus 93 ~~~~~~~~------------~~-~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~-~d~~~~~g~~fV~f~~~~~a~~ 158 (213)
T 4f02_A 93 QRDPSLRK------------SG-VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGSKGYGFVHFETQEAAER 158 (213)
T ss_dssp CCCTHHHH------------HC-TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-EETTEEEEEEEEEESSHHHHHH
T ss_pred cccccccc------------cc-cccceECCcccccHHHHHHHHHhhcCCeEEEEee-ccCCCCceEEEEEeCCHHHHHH
Confidence 65422111 11 1225999999999999999884411111111000 1123479999999999999999
Q ss_pred HHHHHhhh
Q 008117 286 ALEKLTCM 293 (577)
Q Consensus 286 Al~~l~~~ 293 (577)
||..||+.
T Consensus 159 Ai~~lng~ 166 (213)
T 4f02_A 159 AIEKMNGM 166 (213)
T ss_dssp HHHHHTTC
T ss_pred HHHHhCCC
Confidence 99999874
No 2
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.88 E-value=2.2e-22 Score=186.40 Aligned_cols=152 Identities=13% Similarity=0.192 Sum_probs=126.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
+.++|||+|||+.+|+++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999998899999999999999999999999999999999999999886
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCC-CCCCCCCCCCceEEEEeCCHHHHHH
Q 008117 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNE-TGNKESHDPTNFGVVTEEDRKADQE 285 (577)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~-~~~~~~g~~kgfgfV~f~~~e~a~~ 285 (577)
.... ......+||+||+..+++.+|.+++...+...... ..+..+|.++|||||+|.+.++|..
T Consensus 81 ~~~~---------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ 145 (167)
T 1fxl_A 81 PSSA---------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 145 (167)
T ss_dssp CCCG---------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCcc---------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHH
Confidence 5311 11123359999999999999988844221111011 1124578899999999999999999
Q ss_pred HHHHHhhh
Q 008117 286 ALEKLTCM 293 (577)
Q Consensus 286 Al~~l~~~ 293 (577)
|+..|++.
T Consensus 146 A~~~l~g~ 153 (167)
T 1fxl_A 146 AIKGLNGQ 153 (167)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 99998875
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.88 E-value=1.8e-22 Score=187.53 Aligned_cols=152 Identities=14% Similarity=0.230 Sum_probs=127.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999886
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHH
Q 008117 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQE 285 (577)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~ 285 (577)
... .......+||+||+..+++.+|.+++...+....... .+..+|.++|||||.|.+.++|.+
T Consensus 82 ~~~---------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 82 PGG---------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp CCS---------------STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCc---------------ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 531 1122334699999999999999988442221111111 124578899999999999999999
Q ss_pred HHHHHhhh
Q 008117 286 ALEKLTCM 293 (577)
Q Consensus 286 Al~~l~~~ 293 (577)
|+..|++.
T Consensus 147 A~~~l~g~ 154 (168)
T 1b7f_A 147 AISALNNV 154 (168)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 99998875
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.87 E-value=7.6e-22 Score=182.61 Aligned_cols=151 Identities=15% Similarity=0.223 Sum_probs=123.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhh
Q 008117 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (577)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~~ 208 (577)
++|||+|||+++|+++|..+|+.||.|.+|.|+.++ +|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999986 6889999999999999999999999999999999999988553
Q ss_pred HHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHH
Q 008117 209 REYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEAL 287 (577)
Q Consensus 209 ~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al 287 (577)
.. ........+||+||+..+++.+|.+++...+....... .+..+|.++|||||.|.+.++|..|+
T Consensus 80 ~~-------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 146 (166)
T 3md3_A 80 QQ-------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 146 (166)
T ss_dssp CC-------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHH
T ss_pred CC-------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 11 11223344699999999999999988442221111111 12467899999999999999999999
Q ss_pred HHHhhh
Q 008117 288 EKLTCM 293 (577)
Q Consensus 288 ~~l~~~ 293 (577)
..|++.
T Consensus 147 ~~l~g~ 152 (166)
T 3md3_A 147 DSMQGQ 152 (166)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 998864
No 5
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.86 E-value=7e-22 Score=191.42 Aligned_cols=163 Identities=15% Similarity=0.212 Sum_probs=126.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
..++|||+|||+++|+++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999998875
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHH
Q 008117 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQE 285 (577)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~ 285 (577)
........... ........+.+||+||+..+++++|.+++..++....... .+..+|.++|||||+|.+.++|..
T Consensus 107 ~~~~~~~~~~~----~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 107 NIGQAQPIIDQ----LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp CCGGGHHHHHH----HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred Cccccchhhhh----hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 54221111100 0011223345699999999999999988442221111111 124578999999999999999999
Q ss_pred HHHHHhhh
Q 008117 286 ALEKLTCM 293 (577)
Q Consensus 286 Al~~l~~~ 293 (577)
|+..|++.
T Consensus 183 A~~~l~g~ 190 (216)
T 2qfj_A 183 AVSSMNLF 190 (216)
T ss_dssp HHHHHTTC
T ss_pred HHHHccCC
Confidence 99999874
No 6
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.86 E-value=7.6e-22 Score=184.42 Aligned_cols=153 Identities=15% Similarity=0.152 Sum_probs=122.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG--TPKGFGFCEFESAEGVLRALRLLNKFNID---GQELM 201 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg--~~kg~gFV~f~~~~~A~~Al~~Lng~~i~---gr~i~ 201 (577)
..++|||+|||+++|+++|+.+|+.||.|.+|.|+.++.+| .++|||||+|.+.++|..|+..|||..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998776 89999999999999999999999998876 67788
Q ss_pred EEEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHH
Q 008117 202 LKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRK 281 (577)
Q Consensus 202 V~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e 281 (577)
|.++.... ........+||+||+..+++.+|.+++...+.........+.+|.++|||||+|.+.+
T Consensus 82 ~~~~~~~~--------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~ 147 (175)
T 3nmr_A 82 MKPADSEK--------------NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRA 147 (175)
T ss_dssp EEECGGGC--------------CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred Eccccccc--------------cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHH
Confidence 77665421 0111233469999999999999998844111111111111346889999999999999
Q ss_pred HHHHHHHHHhhh
Q 008117 282 ADQEALEKLTCM 293 (577)
Q Consensus 282 ~a~~Al~~l~~~ 293 (577)
+|.+|+..|++.
T Consensus 148 ~A~~A~~~l~g~ 159 (175)
T 3nmr_A 148 MAQTAIKAMHQA 159 (175)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHhcCC
Confidence 999999999864
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.86 E-value=1.3e-21 Score=186.64 Aligned_cols=154 Identities=16% Similarity=0.224 Sum_probs=122.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+++|+++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||.. ++..|+|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4678999999999999999999999999999999999999999999999999999999999985 999999999999988
Q ss_pred hhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHH
Q 008117 206 QATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQ 284 (577)
Q Consensus 206 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~ 284 (577)
........ .........+||+||+..+++.+|.+++..++....... .+..+|.++|||||.|.+.++|.
T Consensus 90 ~~~~~~~~---------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 160 (196)
T 1l3k_A 90 VSREDSQR---------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160 (196)
T ss_dssp CC--------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred cCcccccc---------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHH
Confidence 65422110 011122344699999999999999988442221111111 12457899999999999999999
Q ss_pred HHHHH
Q 008117 285 EALEK 289 (577)
Q Consensus 285 ~Al~~ 289 (577)
+|+..
T Consensus 161 ~A~~~ 165 (196)
T 1l3k_A 161 KIVIQ 165 (196)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 99875
No 8
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.85 E-value=3.4e-21 Score=206.66 Aligned_cols=82 Identities=18% Similarity=0.406 Sum_probs=78.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||+.||+.+|..+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||+.|+|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 180 ~~ 181 (437)
T 3pgw_S 180 RG 181 (437)
T ss_pred CC
Confidence 75
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.84 E-value=2.5e-21 Score=179.80 Aligned_cols=145 Identities=22% Similarity=0.295 Sum_probs=119.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
+.++|||+|||+.+|+++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..||. ++..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999998899999999999999999999998 4689999999999876
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHH
Q 008117 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQE 285 (577)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~ 285 (577)
..... .....+||+||+..+++.+|.+++...+....... .+..+|.++|||||.|.+.++|.+
T Consensus 80 ~~~~~---------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 144 (167)
T 2cjk_A 80 PRDEQ---------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDR 144 (167)
T ss_dssp CHHHH---------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHH
T ss_pred chhhc---------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 54211 11223699999999999999988332221111111 224679999999999999999999
Q ss_pred HHH
Q 008117 286 ALE 288 (577)
Q Consensus 286 Al~ 288 (577)
|+.
T Consensus 145 A~~ 147 (167)
T 2cjk_A 145 VCQ 147 (167)
T ss_dssp HHH
T ss_pred HHh
Confidence 987
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.84 E-value=2.4e-21 Score=181.65 Aligned_cols=150 Identities=16% Similarity=0.229 Sum_probs=123.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+.+|+++|+.+|..||.|.. .++.+..+|.++|||||+|.+.++|..||. |||..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 356899999999999999999999999998776 334444688999999999999999999995 999999999999998
Q ss_pred chhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHH
Q 008117 205 DQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQ 284 (577)
Q Consensus 205 a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~ 284 (577)
+..... ........+||+||+..+++.+|.+++..++..... ..+|.++|||||+|.+.++|.
T Consensus 88 ~~~~~~-------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~ 150 (175)
T 1fje_B 88 PKGRDS-------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAE 150 (175)
T ss_dssp CCCSSC-------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHH
T ss_pred CCCccc-------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHH
Confidence 865310 111223446999999999999999986644433222 567889999999999999999
Q ss_pred HHHHHHhhh
Q 008117 285 EALEKLTCM 293 (577)
Q Consensus 285 ~Al~~l~~~ 293 (577)
+|+..|++.
T Consensus 151 ~A~~~l~g~ 159 (175)
T 1fje_B 151 KNLEEKQGA 159 (175)
T ss_dssp HHHHHHTEE
T ss_pred HHHHHhCCC
Confidence 999998863
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.84 E-value=3.9e-21 Score=185.88 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=119.1
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 127 PQTKVYVGKIA-PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 127 ~~~tlfVgnLp-~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
+.++|||+||| +.+|+++|..+|+.||.|.+|+|+.+ .+|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999865 3699999999999999999999999999999999998
Q ss_pred hhhHHHH-------------Hhhhhhhh--------hc-cccccccccccccCCCcccchhhhcCCCC---CC--ccccc
Q 008117 206 QATREYL-------------ERYVDKKT--------EN-TKKLKETQDAGAGKEDESVQSVEKNEPTK---SP--ENLKD 258 (577)
Q Consensus 206 ~~~~~~~-------------~~~~~~k~--------~~-~~~~~~~~~~~v~nl~~~~~~~~l~e~~k---s~--~~~k~ 258 (577)
....... ..+..... .. .....+...+||+||+..+++++|.+++. .+ ...+.
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 6432100 00000000 00 00012234579999999999999998844 22 21211
Q ss_pred CCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 259 NETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 259 ~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
. ...|..+|||||+|.+.++|..||..||+.
T Consensus 158 ~----~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~ 188 (205)
T 3tyt_A 158 F----SGKSERSSSGLLEWDSKSDALETLGFLNHY 188 (205)
T ss_dssp C----SCCSSSSEEEEEECSSHHHHHHHHHHHTTC
T ss_pred E----cCCCCCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 1 112556799999999999999999999875
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.83 E-value=3.4e-20 Score=187.75 Aligned_cols=155 Identities=14% Similarity=0.151 Sum_probs=127.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
..++|||+|||+.+|+++|..+|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 35799999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCccc-chhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008117 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESV-QSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQE 285 (577)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~-~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~ 285 (577)
.... .........+||+||+..+ ++++|.+++..++.........+.+|.++|||||.|.+.++|..
T Consensus 174 ~~~~------------~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~ 241 (284)
T 3smz_A 174 AGQL------------TPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEE 241 (284)
T ss_dssp GGGC------------CTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHH
T ss_pred CCCC------------CcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHH
Confidence 6311 0111233446999999995 88999888553222211111224578999999999999999999
Q ss_pred HHHHHhhh
Q 008117 286 ALEKLTCM 293 (577)
Q Consensus 286 Al~~l~~~ 293 (577)
|+..|++.
T Consensus 242 A~~~l~g~ 249 (284)
T 3smz_A 242 AQQQADGL 249 (284)
T ss_dssp HHHHHTTC
T ss_pred HHHHhCCC
Confidence 99999874
No 13
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.82 E-value=2.7e-20 Score=186.60 Aligned_cols=140 Identities=14% Similarity=0.127 Sum_probs=117.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+++|+++|+.+|+.||.|..|.|..+ +|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 45789999999999999999999999999999998644 699999999999999999999999999999999987
Q ss_pred hhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008117 206 QATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQE 285 (577)
Q Consensus 206 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~ 285 (577)
.. ...+||+||+..+++.+|.+++..++.+.......+.+|.++|||||+|.+.++|..
T Consensus 94 ~~---------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~ 152 (261)
T 3sde_A 94 TH---------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARK 152 (261)
T ss_dssp CC---------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHH
T ss_pred cc---------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHH
Confidence 53 223699999999999999888442221111111113578999999999999999999
Q ss_pred HHHHHhh
Q 008117 286 ALEKLTC 292 (577)
Q Consensus 286 Al~~l~~ 292 (577)
|+..|++
T Consensus 153 A~~~l~~ 159 (261)
T 3sde_A 153 ALERCGD 159 (261)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9998854
No 14
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.81 E-value=8.3e-20 Score=184.72 Aligned_cols=162 Identities=10% Similarity=0.145 Sum_probs=121.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~----~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i 200 (577)
..+.++|||+|||+.+|+++|+ .+|+.||.|..|.|+. +|.++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4568999999999999999976 8999999999999875 78899999999999999999999999999999999
Q ss_pred EEEEchhhHHHHHhhhh----hhhh-------------------------------------------------------
Q 008117 201 MLKVDQATREYLERYVD----KKTE------------------------------------------------------- 221 (577)
Q Consensus 201 ~V~~a~~~~~~~~~~~~----~k~~------------------------------------------------------- 221 (577)
.|.|+............ ....
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 99998654322111000 0000
Q ss_pred -------------------------------------ccccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCC
Q 008117 222 -------------------------------------NTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNK 264 (577)
Q Consensus 222 -------------------------------------~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~ 264 (577)
..........+||+||+..+++++|.+++..++........
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~-- 240 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-- 240 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe--
Confidence 00011123447999999999999999884422211111110
Q ss_pred CCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 265 ESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 265 ~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+ .+|||||+|.+.++|..|+..|++.
T Consensus 241 -~~-~~g~afV~f~~~~~A~~A~~~l~g~ 267 (282)
T 3pgw_A 241 -PG-RHDIAFVEFDNEVQAGAARDALQGF 267 (282)
T ss_pred -cC-CCcEEEEEeCCHHHHHHHHHHcCCc
Confidence 11 1589999999999999999999874
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.79 E-value=1.6e-19 Score=183.60 Aligned_cols=157 Identities=12% Similarity=0.145 Sum_probs=116.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcC-ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G-~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
..++|||+|||+.+++++|..+|+.|| .|..|.|+.+. .|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 99999999886 4889999999999999999999999999999999999998
Q ss_pred hhhHHHHHhhhhhhhhccccccccccccccCCCcc-cchhhhcCCCCCCcccccCCCCCCC--CCCCCceEEEEeCCHHH
Q 008117 206 QATREYLERYVDKKTENTKKLKETQDAGAGKEDES-VQSVEKNEPTKSPENLKDNETGNKE--SHDPTNFGVVTEEDRKA 282 (577)
Q Consensus 206 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~-~~~~~l~e~~ks~~~~k~~~~~~~~--~g~~kgfgfV~f~~~e~ 282 (577)
......... .........+||+||+.. +++++|.+++..++.........+. +|.++|||||.|.+.++
T Consensus 195 ~~~~~~~~~--------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~ 266 (292)
T 2ghp_A 195 NPLEKSKRT--------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDS 266 (292)
T ss_dssp CCC-----------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHH
T ss_pred CCCcccccc--------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHH
Confidence 754321111 011223344699999999 9999998884422211111111122 48999999999999999
Q ss_pred HHHHHHHHhhh
Q 008117 283 DQEALEKLTCM 293 (577)
Q Consensus 283 a~~Al~~l~~~ 293 (577)
|..|+ .|++.
T Consensus 267 A~~A~-~l~g~ 276 (292)
T 2ghp_A 267 AERAL-QMNRS 276 (292)
T ss_dssp HHHHG-GGTTE
T ss_pred HHHHH-HhcCC
Confidence 99999 88874
No 16
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.79 E-value=1.7e-19 Score=168.16 Aligned_cols=145 Identities=18% Similarity=0.236 Sum_probs=114.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhc----C-------ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~----G-------~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i 195 (577)
+.++|||+|||+.+|+++|+.+|+.| | .|..+.+. .++|||||+|.+.++|..|+ .|||..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 67777664 44799999999999999999 7999999
Q ss_pred CCeEEEEEEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEE
Q 008117 196 DGQELMLKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGV 274 (577)
Q Consensus 196 ~gr~i~V~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgf 274 (577)
+|+.|.|.++.... .......+||+||+..+++.+|.+++...+....... .+..+|.++||||
T Consensus 76 ~g~~i~v~~~~~~~---------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~af 140 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQ---------------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 140 (172)
T ss_dssp TTEECEEECCSSCC---------------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEE
T ss_pred cCceeeecCCcccC---------------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEE
Confidence 99999998764421 1112344699999999999999888332221111111 1245789999999
Q ss_pred EEeCCHHHHHHHHHHHhhh
Q 008117 275 VTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 275 V~f~~~e~a~~Al~~l~~~ 293 (577)
|.|.+.++|.+|+..|++.
T Consensus 141 V~f~~~~~A~~A~~~l~g~ 159 (172)
T 2g4b_A 141 CEYVDINVTDQAIAGLNGM 159 (172)
T ss_dssp EEESSTTHHHHHHHHHTTC
T ss_pred EEeCCHHHHHHHHHHcCCC
Confidence 9999999999999998863
No 17
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.78 E-value=7.6e-19 Score=149.59 Aligned_cols=82 Identities=21% Similarity=0.323 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
..+++|||+|||+++|+++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
.+
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 64
No 18
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.78 E-value=2.6e-19 Score=175.92 Aligned_cols=159 Identities=13% Similarity=0.110 Sum_probs=118.6
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 126 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 126 ~~~~tlfVgnLp~-~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
.+.++|||+|||+ .+++++|+.+|+.||.|..|.|+.++ +|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4578999999999 99999999999999999999998874 78999999999999999999999999999999998
Q ss_pred chhhHHHHHhhhhh-----------h---------hhccccccccccccccCCCcccchhhhcCCCCCCc-ccccCCCCC
Q 008117 205 DQATREYLERYVDK-----------K---------TENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGN 263 (577)
Q Consensus 205 a~~~~~~~~~~~~~-----------k---------~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~-~~k~~~~~~ 263 (577)
+............. . ............+||+||+..+++.+|.+++...+ ........
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~- 185 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF- 185 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC-
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE-
Confidence 86431111000000 0 00000112244579999999999999988843222 11111110
Q ss_pred CCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 264 KESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 264 ~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+|||||+|.+.++|.+|+..|++.
T Consensus 186 ---~~~~g~afV~f~~~~~A~~Ai~~l~g~ 212 (229)
T 2adc_A 186 ---QKDRKMALIQMGSVEEAVQALIDLHNH 212 (229)
T ss_dssp ---SSSTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred ---ECCCcEEEEEECCHHHHHHHHHHHCCC
Confidence 124799999999999999999998874
No 19
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=4.7e-19 Score=155.09 Aligned_cols=109 Identities=15% Similarity=0.247 Sum_probs=74.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
..++|||+|||+++|+++|+.+|+.||.|.+|+|+.+. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999984 5689999999999999999999999999999999999986
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchh
Q 008117 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSV 244 (577)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~ 244 (577)
......... .......++ +||+||+..+|++
T Consensus 82 ~~~~~~~~~------~~~~~~~~~-lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 82 SRKEREAEL------GARAKEFTN-VYIKNFGPGSTRA 112 (115)
T ss_dssp CCCC----------------------------------
T ss_pred Ccccccccc------ccccCCCCc-eEeCCCCCCcccc
Confidence 532111111 111223344 4999999888765
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.78 E-value=7.1e-19 Score=178.76 Aligned_cols=144 Identities=14% Similarity=0.129 Sum_probs=112.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+.+|+++|..+|+.||.|..|.|+.+.. .++|||||+|.+.++|..||. |||..|+|+.|.|.+
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK--KNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSH 114 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT--SSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEE
Confidence 45689999999999999999999999999999999999853 257999999999999999996 899999999999987
Q ss_pred chhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHH
Q 008117 205 DQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKAD 283 (577)
Q Consensus 205 a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~-~~k~~~~~~~~~g~~kgfgfV~f~~~e~a 283 (577)
+. ...+||+||+..+++.+|.+++..++ ............|.++|||||.|.+.++|
T Consensus 115 ~~----------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a 172 (292)
T 2ghp_A 115 LT----------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDA 172 (292)
T ss_dssp CC----------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHH
T ss_pred CC----------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHH
Confidence 52 22359999999999999988733222 11111122234478999999999999999
Q ss_pred HHHHHHHhhh
Q 008117 284 QEALEKLTCM 293 (577)
Q Consensus 284 ~~Al~~l~~~ 293 (577)
..|+..|++.
T Consensus 173 ~~A~~~l~g~ 182 (292)
T 2ghp_A 173 RYCVEKLNGL 182 (292)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhCCC
Confidence 9999988864
No 21
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.77 E-value=7e-19 Score=178.10 Aligned_cols=139 Identities=12% Similarity=0.113 Sum_probs=115.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
+.++|||+|||+++|+++|..+|+.|| |.+|.+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 568999999999999999999999999 999987 4567999999999999999999999999999999998753
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCC-CCCCCCCCCCceEEEEeCCHHHHHH
Q 008117 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNE-TGNKESHDPTNFGVVTEEDRKADQE 285 (577)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~-~~~~~~g~~kgfgfV~f~~~e~a~~ 285 (577)
. ...+||+||+..+++.+|.+++..++...... ..+..+|.++|||||.|.+.++|..
T Consensus 94 ~---------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 152 (284)
T 3smz_A 94 T---------------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAAR 152 (284)
T ss_dssp C---------------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred C---------------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHH
Confidence 2 12359999999999999988844222111111 1125678999999999999999999
Q ss_pred HHHHHhhh
Q 008117 286 ALEKLTCM 293 (577)
Q Consensus 286 Al~~l~~~ 293 (577)
|+..|++.
T Consensus 153 A~~~l~~~ 160 (284)
T 3smz_A 153 AKSDLLGK 160 (284)
T ss_dssp HHHHHTTC
T ss_pred HHHHhCCC
Confidence 99998874
No 22
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.77 E-value=2.8e-19 Score=170.64 Aligned_cols=160 Identities=16% Similarity=0.183 Sum_probs=115.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhc----C-------ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~----G-------~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i 195 (577)
..++|||+|||+.+|+++|..+|+.| | .|..+.+ +.++|||||+|.+.++|..|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 47899999999999999999999999 4 5555554 456799999999999999999 7999999
Q ss_pred CCeEEEEEEchhhHHHHHhhhhhh-----hhccccccccccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCC
Q 008117 196 DGQELMLKVDQATREYLERYVDKK-----TENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDP 269 (577)
Q Consensus 196 ~gr~i~V~~a~~~~~~~~~~~~~k-----~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~ 269 (577)
+|+.|.|.++.............. ............+||+||+..+++.+|.+++..++....... .+..+|.+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 999999998755311100000000 000001123344799999999999999888332221111111 12457899
Q ss_pred CceEEEEeCCHHHHHHHHHHHhhh
Q 008117 270 TNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 270 kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+|||||.|.+.++|..|+..|++.
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~ 179 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGM 179 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCC
Confidence 999999999999999999998874
No 23
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.76 E-value=3.9e-19 Score=170.13 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=117.0
Q ss_pred CceEEEcCCCC-CCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 128 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 128 ~~tlfVgnLp~-~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
.++|||+|||+ .+++++|..+|+.||.|..|.|+.++ +|||||+|.+.++|..||..|||..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999998764 6899999999999999999999999999999999986
Q ss_pred hhHHHHHhhhhhhh--------------------hccccccccccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCC
Q 008117 207 ATREYLERYVDKKT--------------------ENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKE 265 (577)
Q Consensus 207 ~~~~~~~~~~~~k~--------------------~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~-~~k~~~~~~~~ 265 (577)
.............. ...........+||+||+..+++++|.+++...+ ........
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~--- 154 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF--- 154 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEES---
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEE---
Confidence 53211100000000 0000112245579999999999999988733112 11111110
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 266 SHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 266 ~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+|||||.|.+.++|..|+..|++.
T Consensus 155 -~~~~g~afV~f~~~~~A~~A~~~l~g~ 181 (198)
T 1qm9_A 155 -QKDRKMALIQMGSVEEAVQALIDLHNH 181 (198)
T ss_dssp -STTSSCEEEECSSHHHHHHHHHHHTSS
T ss_pred -eCCCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 123799999999999999999998874
No 24
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=8.8e-18 Score=145.82 Aligned_cols=84 Identities=15% Similarity=0.253 Sum_probs=79.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
+.++|||+|||+.+++++|+.+|++||.|.+|.|+.++.||.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhHH
Q 008117 207 ATRE 210 (577)
Q Consensus 207 ~~~~ 210 (577)
....
T Consensus 85 ~~~~ 88 (110)
T 3s8s_A 85 KGQQ 88 (110)
T ss_dssp TTHH
T ss_pred CCcH
Confidence 6543
No 25
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=2.4e-17 Score=144.65 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=77.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+++++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34679999999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred ch
Q 008117 205 DQ 206 (577)
Q Consensus 205 a~ 206 (577)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 26
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=153.35 Aligned_cols=83 Identities=23% Similarity=0.344 Sum_probs=77.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC--ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G--~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~ 203 (577)
...++|||||||+++|+++|+.+|+.|| .|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred Echhh
Q 008117 204 VDQAT 208 (577)
Q Consensus 204 ~a~~~ 208 (577)
++...
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99764
No 27
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=141.24 Aligned_cols=83 Identities=19% Similarity=0.370 Sum_probs=77.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCc--eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eeCCe
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT--VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQ 198 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~--v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~----~i~gr 198 (577)
.....||||+|||+.+|+++|+.+|+.||. |..|+|+.|+.||.++|||||+|.+.++|..||..|||. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345789999999999999999999999995 679999999999999999999999999999999999996 59999
Q ss_pred EEEEEEchh
Q 008117 199 ELMLKVDQA 207 (577)
Q Consensus 199 ~i~V~~a~~ 207 (577)
.|.|.||.+
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=3.4e-18 Score=143.23 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=75.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcC-ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEEc
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKVD 205 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G-~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~L-ng~~i~gr~i~V~~a 205 (577)
+.+|||+|||+++|+++|+.+|+.|| .|.+|+|+.++.||.++|||||+|.+.++|.+||..| |+..|+|+.|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999999999999999999999999999877 567899999999998
Q ss_pred hhh
Q 008117 206 QAT 208 (577)
Q Consensus 206 ~~~ 208 (577)
...
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 653
No 29
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.71 E-value=5.2e-17 Score=134.18 Aligned_cols=82 Identities=16% Similarity=0.320 Sum_probs=77.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||..+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 65
No 30
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=1.2e-17 Score=142.36 Aligned_cols=86 Identities=17% Similarity=0.217 Sum_probs=80.9
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-e
Q 008117 126 KPQTKVYVGKIAP------TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-Q 198 (577)
Q Consensus 126 ~~~~tlfVgnLp~------~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~g-r 198 (577)
...++|||+|||+ .+++++|+.+|+.||.|.+|.|+.++.||.++|||||+|.+.++|..||..|||..|+| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEEEchhhHHH
Q 008117 199 ELMLKVDQATREY 211 (577)
Q Consensus 199 ~i~V~~a~~~~~~ 211 (577)
.|.|.++.....+
T Consensus 84 ~l~V~~a~~~~~~ 96 (100)
T 3ns6_A 84 RLFLYTMKDVERY 96 (100)
T ss_dssp BCEEEESHHHHHH
T ss_pred EEEEEECchhhhh
Confidence 9999999876554
No 31
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.71 E-value=5.2e-17 Score=137.87 Aligned_cols=81 Identities=14% Similarity=0.225 Sum_probs=77.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~--------~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~g 197 (577)
.+.++|||+|||+++++++|+.+|+.||.|.. |.|+.++.+|.++|||||+|.+.++|..||..|||..|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45799999999999999999999999999999 9999998999999999999999999999999999999999
Q ss_pred eEEEEEEch
Q 008117 198 QELMLKVDQ 206 (577)
Q Consensus 198 r~i~V~~a~ 206 (577)
+.|.|.++.
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999873
No 32
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=6e-17 Score=132.58 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=77.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~ 207 (577)
+.+|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999989999999999999999999999999999999999999999865
No 33
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=8.4e-17 Score=135.06 Aligned_cols=81 Identities=15% Similarity=0.232 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999999987
Q ss_pred h
Q 008117 206 Q 206 (577)
Q Consensus 206 ~ 206 (577)
.
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=5.3e-17 Score=133.56 Aligned_cols=81 Identities=21% Similarity=0.362 Sum_probs=77.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46799999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred h
Q 008117 206 Q 206 (577)
Q Consensus 206 ~ 206 (577)
.
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 35
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=6.7e-17 Score=136.39 Aligned_cols=84 Identities=26% Similarity=0.405 Sum_probs=79.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
+.++|||+|||..+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred hhHH
Q 008117 207 ATRE 210 (577)
Q Consensus 207 ~~~~ 210 (577)
....
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7543
No 36
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.7e-17 Score=141.86 Aligned_cols=82 Identities=17% Similarity=0.251 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45689999999999999999999999999999999999989999999999999999999999 89999999999999998
Q ss_pred hhh
Q 008117 206 QAT 208 (577)
Q Consensus 206 ~~~ 208 (577)
...
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 764
No 37
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.69 E-value=2.7e-16 Score=141.93 Aligned_cols=83 Identities=23% Similarity=0.332 Sum_probs=79.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||..+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 119 a~~ 121 (139)
T 1u6f_A 119 AAS 121 (139)
T ss_dssp SSC
T ss_pred CCC
Confidence 865
No 38
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=134.19 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=78.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 39
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.69 E-value=1.7e-16 Score=138.58 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 103 ~~ 104 (115)
T 2cpz_A 103 RS 104 (115)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 40
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=135.84 Aligned_cols=82 Identities=23% Similarity=0.381 Sum_probs=77.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||. ||+..|+|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3467899999999999999999999999999999999999899999999999999999999999 899999999999998
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 86 a~~ 88 (99)
T 2dgs_A 86 AEP 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 41
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=134.78 Aligned_cols=82 Identities=23% Similarity=0.431 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 65
No 42
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=137.08 Aligned_cols=83 Identities=20% Similarity=0.398 Sum_probs=79.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred hhh
Q 008117 206 QAT 208 (577)
Q Consensus 206 ~~~ 208 (577)
...
T Consensus 93 ~~~ 95 (105)
T 1x5u_A 93 SAH 95 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 653
No 43
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=138.49 Aligned_cols=83 Identities=23% Similarity=0.432 Sum_probs=78.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45679999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 103 a~~ 105 (108)
T 2jrs_A 103 VTE 105 (108)
T ss_dssp SCS
T ss_pred ccc
Confidence 754
No 44
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.69 E-value=2.2e-17 Score=137.81 Aligned_cols=80 Identities=19% Similarity=0.296 Sum_probs=72.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC--ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 129 TKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G--~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
.+|||+|||+++|+++|+.+|+.|| .|.+|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999998876
Q ss_pred hh
Q 008117 207 AT 208 (577)
Q Consensus 207 ~~ 208 (577)
..
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 45
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.69 E-value=2.2e-16 Score=137.74 Aligned_cols=84 Identities=15% Similarity=0.311 Sum_probs=79.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34689999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred chhh
Q 008117 205 DQAT 208 (577)
Q Consensus 205 a~~~ 208 (577)
+...
T Consensus 92 a~~~ 95 (115)
T 2dgo_A 92 ATRK 95 (115)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 8653
No 46
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=137.49 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 101 ~~ 102 (106)
T 1p27_B 101 FV 102 (106)
T ss_dssp EE
T ss_pred cC
Confidence 65
No 47
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=8.4e-17 Score=137.57 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=79.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34579999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 90 a~~ 92 (103)
T 2dnm_A 90 ARY 92 (103)
T ss_dssp CSS
T ss_pred CCc
Confidence 865
No 48
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=134.54 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=79.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred hhh
Q 008117 206 QAT 208 (577)
Q Consensus 206 ~~~ 208 (577)
...
T Consensus 86 ~~~ 88 (99)
T 1whw_A 86 TIK 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 664
No 49
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.68 E-value=1.3e-16 Score=138.03 Aligned_cols=82 Identities=22% Similarity=0.237 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 104 ~~ 105 (110)
T 1oo0_B 104 FV 105 (110)
T ss_dssp EE
T ss_pred cc
Confidence 65
No 50
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=135.59 Aligned_cols=83 Identities=18% Similarity=0.292 Sum_probs=79.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34579999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 92 a~~ 94 (103)
T 2cq0_A 92 AKP 94 (103)
T ss_dssp SSC
T ss_pred CCC
Confidence 865
No 51
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=136.53 Aligned_cols=83 Identities=20% Similarity=0.352 Sum_probs=79.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 46789999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred hhh
Q 008117 206 QAT 208 (577)
Q Consensus 206 ~~~ 208 (577)
...
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 52
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.68 E-value=2.3e-16 Score=135.77 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=76.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||+.+|+++|+.+|+.||.|..|.|+.+. +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 457999999999999999999999999999999999997 9999999999999999999999999999999999999987
Q ss_pred h
Q 008117 206 Q 206 (577)
Q Consensus 206 ~ 206 (577)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 53
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.68 E-value=2.5e-16 Score=130.26 Aligned_cols=80 Identities=24% Similarity=0.380 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||. +++..|+|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3567899999999999999999999999999999999999999999999999999999999997 589999999999987
Q ss_pred c
Q 008117 205 D 205 (577)
Q Consensus 205 a 205 (577)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 54
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.2e-16 Score=133.15 Aligned_cols=81 Identities=17% Similarity=0.361 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|+.+|..||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 457899999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 94 ~~ 95 (100)
T 2do4_A 94 NS 95 (100)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 55
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=134.97 Aligned_cols=82 Identities=17% Similarity=0.370 Sum_probs=78.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~-~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
.+.++|||+|||+.+|+++|..+|+.||.|..| .|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 9999988999999999999999999999999999999999999998
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 865
No 56
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=133.50 Aligned_cols=81 Identities=22% Similarity=0.431 Sum_probs=76.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++. |.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4578999999999999999999999999999999999974 999999999999999999999999999999999999987
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 57
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=136.62 Aligned_cols=82 Identities=18% Similarity=0.359 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC------CceeCCeE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN------KFNIDGQE 199 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Ln------g~~i~gr~ 199 (577)
.+.++|||+|||+.+|+++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|..||..|| |..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 457899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEEEchh
Q 008117 200 LMLKVDQA 207 (577)
Q Consensus 200 i~V~~a~~ 207 (577)
|.|.|+..
T Consensus 93 l~v~~a~~ 100 (111)
T 1x4h_A 93 LKVDLAVT 100 (111)
T ss_dssp EEEECCCC
T ss_pred EEEEECCC
Confidence 99998765
No 58
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=135.49 Aligned_cols=82 Identities=18% Similarity=0.361 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 90 ~~ 91 (102)
T 1x5s_A 90 GK 91 (102)
T ss_dssp EC
T ss_pred CC
Confidence 65
No 59
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.67 E-value=3e-16 Score=134.54 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC---eEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG---QELML 202 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~g---r~i~V 202 (577)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 458999999999999999999999999999999999997 89999999999999999999999999999998 99999
Q ss_pred EEchhh
Q 008117 203 KVDQAT 208 (577)
Q Consensus 203 ~~a~~~ 208 (577)
.|+...
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 998653
No 60
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=135.50 Aligned_cols=84 Identities=20% Similarity=0.411 Sum_probs=79.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY-PSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELML 202 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~-~~tg~~kg~gFV~f~~~~~A~~Al~~L-ng~~i~gr~i~V 202 (577)
....++|||+|||+.+|+++|+.+|+.||.|..|.|+.+ +.+|.++|||||+|.+.++|..||..| ||..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 456799999999999999999999999999999999998 789999999999999999999999999 999999999999
Q ss_pred EEchhh
Q 008117 203 KVDQAT 208 (577)
Q Consensus 203 ~~a~~~ 208 (577)
.|+...
T Consensus 92 ~~a~~~ 97 (107)
T 2cph_A 92 EWADSE 97 (107)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 998653
No 61
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.67 E-value=1.8e-16 Score=136.16 Aligned_cols=83 Identities=17% Similarity=0.281 Sum_probs=78.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CCeEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQELM 201 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i---~gr~i~ 201 (577)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..| .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999988 899999
Q ss_pred EEEchh
Q 008117 202 LKVDQA 207 (577)
Q Consensus 202 V~~a~~ 207 (577)
|.++..
T Consensus 90 v~~a~~ 95 (106)
T 2dgp_A 90 VKPADS 95 (106)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 998865
No 62
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=134.37 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=78.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceE-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeE----E
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK-SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE----L 200 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~-~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~----i 200 (577)
...++|||+|||+++++++|+.+|+.||.|. .|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4579999999999999999999999999999 9999999999999999999999999999999999999999999 9
Q ss_pred EEEEchh
Q 008117 201 MLKVDQA 207 (577)
Q Consensus 201 ~V~~a~~ 207 (577)
.|.|+..
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9988764
No 63
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.67 E-value=4.7e-17 Score=138.57 Aligned_cols=81 Identities=20% Similarity=0.423 Sum_probs=74.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~-~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~ 203 (577)
....++|||+|||+++++++|+.+|+.|| |..|.|+.++ .+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34579999999999999999999999999 9999999987 69999999999999999999999 899999999999999
Q ss_pred Echh
Q 008117 204 VDQA 207 (577)
Q Consensus 204 ~a~~ 207 (577)
++..
T Consensus 94 ~a~~ 97 (100)
T 2j76_E 94 VADQ 97 (100)
T ss_dssp ECCC
T ss_pred eccC
Confidence 8865
No 64
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=134.19 Aligned_cols=82 Identities=20% Similarity=0.405 Sum_probs=77.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS---NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~---tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V 202 (577)
.+.++|||+|||+.+|+++|+.+|+.||.|..|.|+.++. |+.++|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3578999999999999999999999999999999998876 6689999999999999999999999999999999999
Q ss_pred EEchh
Q 008117 203 KVDQA 207 (577)
Q Consensus 203 ~~a~~ 207 (577)
.++..
T Consensus 83 ~~a~~ 87 (98)
T 2cpf_A 83 RISER 87 (98)
T ss_dssp ECSSC
T ss_pred EEccC
Confidence 98765
No 65
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.66 E-value=3.1e-16 Score=130.10 Aligned_cols=79 Identities=24% Similarity=0.417 Sum_probs=76.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~ 207 (577)
.++|||+|||+.+|+++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+ .|||..|+|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999889999999999999999999999 8999999999999998865
No 66
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=136.46 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=78.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceE--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~--------~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~ 196 (577)
....++|||+|||+.+|+++|+.+|+.||.|. .|.|+.++.+|.++|||||+|.+.++|..||..|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45689999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CeEEEEEEchh
Q 008117 197 GQELMLKVDQA 207 (577)
Q Consensus 197 gr~i~V~~a~~ 207 (577)
|+.|.|.++..
T Consensus 92 g~~l~V~~a~~ 102 (113)
T 2cpe_A 92 GSKLKVSLARK 102 (113)
T ss_dssp TEECEEECSSC
T ss_pred CCEEEEEECCC
Confidence 99999998765
No 67
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=136.54 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||||||+.+|+++|+.+|+.||.|.+|.|+.++. |.++|||||+|.+.++|..||. +||..|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 4568999999999999999999999999999999999976 9999999999999999999999 8999999999999987
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 68
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.66 E-value=2.2e-16 Score=140.12 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|..+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 100 ~~ 101 (126)
T 3ex7_B 100 FV 101 (126)
T ss_dssp EE
T ss_pred cC
Confidence 65
No 69
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=4.3e-16 Score=133.19 Aligned_cols=80 Identities=18% Similarity=0.321 Sum_probs=76.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||+.+++++|+.+|+.|| |..|.|+.++.+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4579999999999999999999999997 999999999999999999999999999999999 79999999999999988
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 91 ~~ 92 (103)
T 2dng_A 91 EG 92 (103)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 70
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=130.26 Aligned_cols=81 Identities=25% Similarity=0.430 Sum_probs=76.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT-PKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~-~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
..++|||+|||+++|+++|..+|+.||.|..|.|+.+..++. ++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999887766 8999999999999999999999999999999999987
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 71
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.1e-16 Score=131.09 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +.++|||||+|.+.++|..||..|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 4567999999999999999999999999999999999984 34689999999999999999999999999999999999
Q ss_pred chhh
Q 008117 205 DQAT 208 (577)
Q Consensus 205 a~~~ 208 (577)
+...
T Consensus 90 a~~~ 93 (103)
T 2cqi_A 90 ATTP 93 (103)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 8663
No 72
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.65 E-value=2.1e-16 Score=141.06 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 124 ~~ 125 (129)
T 2kxn_B 124 IT 125 (129)
T ss_dssp SS
T ss_pred cC
Confidence 65
No 73
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.7e-16 Score=132.86 Aligned_cols=81 Identities=25% Similarity=0.341 Sum_probs=77.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+.+|+++|+.+|+.||.|..|.|+.+ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346889999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 90 a~~ 92 (103)
T 2d9p_A 90 AQR 92 (103)
T ss_dssp CSS
T ss_pred ecc
Confidence 865
No 74
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.4e-16 Score=132.81 Aligned_cols=80 Identities=23% Similarity=0.449 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN-GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~t-g~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
.+.++|||+|||+.+++++|+.+|..|| |..|.|+.++.+ |.++|||||+|.+.++|..|| .|||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4569999999999999999999999999 999999999887 999999999999999999999 8999999999999998
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 91 a~~ 93 (104)
T 1wi8_A 91 ADQ 93 (104)
T ss_dssp CCC
T ss_pred ccC
Confidence 865
No 75
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3e-16 Score=132.79 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=77.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+++++|+.+|..||.|..+.++.+..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45789999999999999999999999999998888888889999999999999999999999999999999999999987
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 76
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.65 E-value=3.4e-16 Score=137.05 Aligned_cols=82 Identities=15% Similarity=0.319 Sum_probs=77.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+++|+++|..+|+.||.|..|.|+.+. +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 457899999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred hhh
Q 008117 206 QAT 208 (577)
Q Consensus 206 ~~~ 208 (577)
...
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 77
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8e-16 Score=134.44 Aligned_cols=82 Identities=18% Similarity=0.290 Sum_probs=77.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+.+|+++|+.+|..||.|..|.|+.++.++.++|||||+|.+.++|..||..||+ .|.|+.|.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 93 a~~ 95 (116)
T 2cqd_A 93 AYL 95 (116)
T ss_dssp STT
T ss_pred ccc
Confidence 854
No 78
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.65 E-value=3.8e-16 Score=135.16 Aligned_cols=82 Identities=21% Similarity=0.328 Sum_probs=74.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+.+|+++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..+ +..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 456789999999999999999999999999999999999989999999999999999999999975 6999999999998
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 101 a~~ 103 (109)
T 2rs2_A 101 AFP 103 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 865
No 79
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.65 E-value=5.3e-16 Score=129.58 Aligned_cols=80 Identities=25% Similarity=0.423 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.+ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999884 8999999999999999999999999999999999999988
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 84 ~~ 85 (92)
T 2dgv_A 84 RN 85 (92)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 80
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-15 Score=129.66 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=75.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+.+|+++|+.+|+.||.|..|.|+.+. +.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467999999999999999999999999999999999885 34899999999999999999999999999999999998
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 90 a~~ 92 (103)
T 2cq3_A 90 ATA 92 (103)
T ss_dssp CCS
T ss_pred ccc
Confidence 865
No 81
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=142.64 Aligned_cols=82 Identities=17% Similarity=0.368 Sum_probs=77.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eeCCe
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQ 198 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~--~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~----~i~gr 198 (577)
....++|||+|||+.+|+++|+.+|..||.|.. |.|+.++.+|.++|||||+|.+. +|..||..|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345789999999999999999999999999977 99999999999999999999999 999999999999 99999
Q ss_pred EEEEEEchh
Q 008117 199 ELMLKVDQA 207 (577)
Q Consensus 199 ~i~V~~a~~ 207 (577)
.|.|.++..
T Consensus 99 ~l~V~~a~~ 107 (131)
T 2m2b_A 99 TINVEFAKG 107 (131)
T ss_dssp CCCCEECCC
T ss_pred EEEEEECCC
Confidence 999998865
No 82
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.64 E-value=7.1e-16 Score=143.61 Aligned_cols=83 Identities=22% Similarity=0.235 Sum_probs=78.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||+.+|+.+|..+|+.||.|..|.|+.++.+|.++|||||+|.+..+|..||..|||..|+|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhh
Q 008117 206 QAT 208 (577)
Q Consensus 206 ~~~ 208 (577)
...
T Consensus 150 ~~~ 152 (165)
T 1rk8_A 150 FVK 152 (165)
T ss_dssp EEC
T ss_pred cCC
Confidence 653
No 83
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8e-16 Score=129.88 Aligned_cols=79 Identities=14% Similarity=0.199 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~----~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~ 201 (577)
...++|||+|||+.+++++|+ .+|+.||.|..|.|+.++.+ +|||||+|.+.++|..||..|||..|+|+.|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 357899999999999999999 99999999999999988654 88999999999999999999999999999999
Q ss_pred EEEchh
Q 008117 202 LKVDQA 207 (577)
Q Consensus 202 V~~a~~ 207 (577)
|.++..
T Consensus 84 V~~a~~ 89 (96)
T 2dgx_A 84 VSLATG 89 (96)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 998865
No 84
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.9e-16 Score=134.31 Aligned_cols=83 Identities=29% Similarity=0.536 Sum_probs=79.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hhh
Q 008117 206 QAT 208 (577)
Q Consensus 206 ~~~ 208 (577)
...
T Consensus 86 ~~~ 88 (104)
T 1p1t_A 86 ASE 88 (104)
T ss_dssp TCT
T ss_pred CCc
Confidence 764
No 85
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.2e-16 Score=134.92 Aligned_cols=81 Identities=19% Similarity=0.243 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||..+|+++|+.+|+.||.|..|.|+.+. +.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999884 45899999999999999999999999999999999998
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 104 a~~ 106 (109)
T 2err_A 104 ATA 106 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 86
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=132.90 Aligned_cols=81 Identities=17% Similarity=0.293 Sum_probs=76.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||+.+++++|+.+|..||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 457899999999999999999999999999999999996 6999999999999999999999999999999999999987
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 87
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.8e-16 Score=133.63 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=77.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhh-cCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-eCCeEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-IDGQELMLK 203 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~-~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~-i~gr~i~V~ 203 (577)
.+.++|||+|||+.+|+++|+.+|+. ||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||.. |+|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45789999999999999999999999 9999999999998 99999999999999999999999999999 999999998
Q ss_pred Echh
Q 008117 204 VDQA 207 (577)
Q Consensus 204 ~a~~ 207 (577)
++..
T Consensus 86 ~a~~ 89 (104)
T 2dhg_A 86 VAIP 89 (104)
T ss_dssp BCCC
T ss_pred EccC
Confidence 8754
No 88
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.64 E-value=1.9e-16 Score=127.12 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=72.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 130 tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
+|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+. |||..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999998 8999999999999865
No 89
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.64 E-value=7.3e-16 Score=126.28 Aligned_cols=74 Identities=12% Similarity=0.235 Sum_probs=70.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
.+.-||||||++.+|+++|+.+|..||+|.+|.++. ++|||||+|.+.++|..|+..||+..|.|+.|.|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999865 57999999999999999999999999999999999984
No 90
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=137.83 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|+.+|+.||.|..+.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.||
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 45799999999999999999999999999999999999899999999999999999999999999999999999999875
No 91
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.64 E-value=2.3e-16 Score=135.61 Aligned_cols=81 Identities=14% Similarity=0.259 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCC------CHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe-
Q 008117 126 KPQTKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ- 198 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~------te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr- 198 (577)
...++|||+|||+.+ |+++|+.+|+.||.|..|.|+ ..+|.++|||||+|.+.++|..||..|||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 457899999999999 789999999999999999988 36899999999999999999999999999999998
Q ss_pred EEEEEEchhh
Q 008117 199 ELMLKVDQAT 208 (577)
Q Consensus 199 ~i~V~~a~~~ 208 (577)
.|.|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999987653
No 92
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.6e-17 Score=132.13 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999988654
No 93
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=127.30 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+.+|+++|+.+|+.| .|..|.|+.+ .+|.++|||||+|.+.++|..||. |||..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3467899999999999999999999999 9999999999 799999999999999999999999 999999999999998
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 84 a~~ 86 (91)
T 2dgw_A 84 EKS 86 (91)
T ss_dssp ESS
T ss_pred CCc
Confidence 765
No 94
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.64 E-value=3.1e-16 Score=138.73 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=76.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
..++|||+|||+.+|+++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999889999999999999999999999 799999999999999876
Q ss_pred h
Q 008117 207 A 207 (577)
Q Consensus 207 ~ 207 (577)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 95
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-15 Score=129.28 Aligned_cols=82 Identities=18% Similarity=0.245 Sum_probs=76.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|..||. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4567899999999999999999999999999999999998899999999999999999999998 58899999999998
Q ss_pred chhh
Q 008117 205 DQAT 208 (577)
Q Consensus 205 a~~~ 208 (577)
+...
T Consensus 90 a~~~ 93 (103)
T 2cqg_A 90 PNSK 93 (103)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 8653
No 96
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.64 E-value=2.8e-16 Score=132.09 Aligned_cols=80 Identities=21% Similarity=0.217 Sum_probs=75.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
+.++|||+|||+.+|+++|+.+|..||.|..+.++.+..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999999898888899999999999999999999999999999999999998764
No 97
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.64 E-value=3.8e-15 Score=131.81 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=78.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.+. +|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred chhh
Q 008117 205 DQAT 208 (577)
Q Consensus 205 a~~~ 208 (577)
+...
T Consensus 111 a~~~ 114 (124)
T 2kt5_A 111 VASQ 114 (124)
T ss_dssp ECCT
T ss_pred eCCC
Confidence 8653
No 98
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.5e-16 Score=132.10 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=77.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|..||.. |+..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999998 99999999999988
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 92 a~~ 94 (105)
T 2dh8_A 92 CTP 94 (105)
T ss_dssp SCC
T ss_pred ccC
Confidence 755
No 99
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.63 E-value=1.4e-15 Score=140.10 Aligned_cols=82 Identities=21% Similarity=0.307 Sum_probs=78.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|..+|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..||+..|+|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 117 ~~ 118 (156)
T 1h2v_Z 117 AG 118 (156)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 100
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=9.2e-16 Score=136.41 Aligned_cols=81 Identities=12% Similarity=0.269 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~----~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~ 201 (577)
.+.++|||+|||+.+++++|+ .+|+.||.|..|.+. .+|.++|||||+|.+.++|..||..|||..|.|+.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 457899999999999999876 799999999998774 3688999999999999999999999999999999999
Q ss_pred EEEchhhH
Q 008117 202 LKVDQATR 209 (577)
Q Consensus 202 V~~a~~~~ 209 (577)
|.|+....
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99987653
No 101
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.7e-16 Score=126.72 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=73.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|+ ..|+|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999998899999999999999999999999988 9999999999876
No 102
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.2e-15 Score=129.12 Aligned_cols=80 Identities=19% Similarity=0.357 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+.+|+++|+.+|+.||.|..|.|.. ++.++|||||+|.+.++|..||..||+..|+|+.|.|.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999955 456899999999999999999999999999999999998
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 96 a~~ 98 (109)
T 1x4a_A 96 PRS 98 (109)
T ss_dssp CCC
T ss_pred ccc
Confidence 865
No 103
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.62 E-value=1.6e-15 Score=139.91 Aligned_cols=82 Identities=18% Similarity=0.281 Sum_probs=78.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 148 ~~ 149 (158)
T 2kn4_A 148 RY 149 (158)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 104
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=1.1e-15 Score=134.21 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=76.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCc---eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~---v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~ 201 (577)
....++|||+|||+++|+++|+.+|+.||. |..|.|+.++. |+++|||||+|.+.++|..||. |||..|+|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999999999999999999999 89999999975 9999999999999999999999 899999999999
Q ss_pred EEEchhh
Q 008117 202 LKVDQAT 208 (577)
Q Consensus 202 V~~a~~~ 208 (577)
|.++...
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9988654
No 105
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9e-16 Score=131.24 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=69.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLK 203 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Ln--g~~i~gr~i~V~ 203 (577)
.+.++|||+|||+.+|+++|+.+|+.||.|.+|.|+.+ +|||||+|.+.++|..||..|+ +..|.|+.|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 35789999999999999999999999999999999875 6999999999999999999886 479999999998
Q ss_pred Echh
Q 008117 204 VDQA 207 (577)
Q Consensus 204 ~a~~ 207 (577)
|+..
T Consensus 88 ~A~~ 91 (105)
T 1sjq_A 88 FSNH 91 (105)
T ss_dssp CCSS
T ss_pred EcCC
Confidence 8755
No 106
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.7e-16 Score=133.93 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|..||.. |+..|+|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3468999999999999999999999999999999999999999999999999999999999997 999999999999987
Q ss_pred hhh
Q 008117 206 QAT 208 (577)
Q Consensus 206 ~~~ 208 (577)
...
T Consensus 104 ~~~ 106 (116)
T 1x4b_A 104 VAR 106 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 107
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.62 E-value=2e-16 Score=131.73 Aligned_cols=79 Identities=25% Similarity=0.404 Sum_probs=74.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhh
Q 008117 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (577)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~~ 208 (577)
++|||+|||..+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.+ |..|+..|||..|+|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999989999999999999999 99999999999999999999998764
No 108
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1e-15 Score=132.05 Aligned_cols=83 Identities=17% Similarity=0.270 Sum_probs=77.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCc-eEEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRA-QYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELM 201 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~-v~~~~i~-~~~~tg~~kg~gFV~f~~~~~A~~Al~~Ln--g~~i~gr~i~ 201 (577)
.+.++|||+|||+.+|+++|+.+|..||. |..|.|+ .+..+|.++|||||+|.+.++|..||..|| +..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35789999999999999999999999998 9999998 788889999999999999999999999996 5999999999
Q ss_pred EEEchhh
Q 008117 202 LKVDQAT 208 (577)
Q Consensus 202 V~~a~~~ 208 (577)
|.|+...
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9998653
No 109
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.62 E-value=9.3e-16 Score=150.53 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=78.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcC--ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G--~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
..++|||+||++.+|+++|+.+|+.|| .|..|.|+.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred chhhH
Q 008117 205 DQATR 209 (577)
Q Consensus 205 a~~~~ 209 (577)
+....
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 87653
No 110
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=133.01 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCce-EEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v-~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
...++|||+|||+.+|+++|+.+|+.||.| ..|.|+.++ +|.++|||||+|.+.++|..||.. |+..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 457899999999999999999999999999 899999997 999999999999999999999996 99999999999999
Q ss_pred chhh
Q 008117 205 DQAT 208 (577)
Q Consensus 205 a~~~ 208 (577)
+...
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8664
No 111
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.3e-15 Score=129.29 Aligned_cols=82 Identities=26% Similarity=0.356 Sum_probs=76.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--------C
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI--------D 196 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i--------~ 196 (577)
....++|||+|||+.+|+++|+.+|..||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3467899999999999999999999999999999999997 999999999999999999999999999999 5
Q ss_pred CeEEEEEEchh
Q 008117 197 GQELMLKVDQA 207 (577)
Q Consensus 197 gr~i~V~~a~~ 207 (577)
++.|.|.|+..
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 78899988764
No 112
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1e-15 Score=135.53 Aligned_cols=82 Identities=21% Similarity=0.247 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|+.+|..||.|..+.++.+..+|.++|||||+|.+.++|..||. |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 456899999999999999999999999999886666666799999999999999999999999 9999999999999998
Q ss_pred hhh
Q 008117 206 QAT 208 (577)
Q Consensus 206 ~~~ 208 (577)
...
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 664
No 113
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.61 E-value=5.1e-16 Score=139.74 Aligned_cols=82 Identities=18% Similarity=0.281 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 125 ~~ 126 (135)
T 2lea_A 125 RY 126 (135)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 114
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=5.3e-16 Score=126.60 Aligned_cols=73 Identities=15% Similarity=0.324 Sum_probs=68.2
Q ss_pred CceEEEcCCCCCC------CHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 008117 128 QTKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-EL 200 (577)
Q Consensus 128 ~~tlfVgnLp~~~------te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr-~i 200 (577)
.++|||+|||+.+ |+++|+.+|+.||.|..|.|+ +.+|.++|||||+|.+.++|..||..|||..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999987 35899999999999999999999999999999999 88
Q ss_pred EE
Q 008117 201 ML 202 (577)
Q Consensus 201 ~V 202 (577)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 115
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.3e-15 Score=133.00 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=73.6
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCce
Q 008117 129 TKVYVGKI----APTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES----AEG----VLRALR--LLNKFN 194 (577)
Q Consensus 129 ~tlfVgnL----p~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~----~~~----A~~Al~--~Lng~~ 194 (577)
+.|||||| |+.+++..|+.+|+.||.|.+|.++.|+.||.++|||||+|.+ +.+ |..||. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 788888 789999
Q ss_pred eCCeEEEEEEchhhH
Q 008117 195 IDGQELMLKVDQATR 209 (577)
Q Consensus 195 i~gr~i~V~~a~~~~ 209 (577)
|+|+.|+|.+.....
T Consensus 83 I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 83 IMGFKFEVILNKHSI 97 (136)
T ss_dssp ETTEEEEEEECCTTH
T ss_pred ecCcEEEEEECcccH
Confidence 999999999987653
No 116
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=1.9e-14 Score=145.28 Aligned_cols=77 Identities=12% Similarity=0.211 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 203 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~-gr~i~V~ 203 (577)
..+.++|||+|||..+|+++|+.+|+.||.|..|.|+.+. +|||||+|.+.++|..||..|||..|+ |+.|.|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 4467899999999999999999999999999999998653 589999999999999999999999999 9999999
Q ss_pred Ech
Q 008117 204 VDQ 206 (577)
Q Consensus 204 ~a~ 206 (577)
|+.
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 875
No 117
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4e-15 Score=126.83 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCceeCCeEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELML 202 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~L--ng~~i~gr~i~V 202 (577)
..+.++|||+|||+.+|+++|+.+|+.||.|..|.|+.+ +|||||+|.+.++|..||..| ++..|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 346789999999999999999999999999999988764 699999999999999999976 578899999999
Q ss_pred EEchh
Q 008117 203 KVDQA 207 (577)
Q Consensus 203 ~~a~~ 207 (577)
.|+..
T Consensus 86 ~~a~~ 90 (101)
T 2cq1_A 86 QYSNH 90 (101)
T ss_dssp EECSC
T ss_pred EEcCc
Confidence 99865
No 118
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=3e-16 Score=133.59 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=74.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+++|+++|+.+|+.||.|.. .++.+..+|.++|||||+|.+.++|..||. |||..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45789999999999999999999999999988 666777789999999999999999999999 9999999999999987
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 93 ~~ 94 (101)
T 1fj7_A 93 KG 94 (101)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 119
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=4.2e-15 Score=125.77 Aligned_cols=75 Identities=16% Similarity=0.386 Sum_probs=69.9
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008117 125 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (577)
Q Consensus 125 ~~~~~tlfVgnLp~-~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~ 203 (577)
..+.++|||+|||+ .+++++|+.+|+.||.|..|.|. +|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34689999999998 99999999999999999999983 6899999999999999999999999999999999
Q ss_pred Echh
Q 008117 204 VDQA 207 (577)
Q Consensus 204 ~a~~ 207 (577)
++..
T Consensus 91 ~a~~ 94 (97)
T 2xnq_A 91 VSSS 94 (97)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 8764
No 120
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.60 E-value=3.5e-15 Score=130.06 Aligned_cols=81 Identities=14% Similarity=0.271 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||+.+|+++|..+|+.||.|..|.|+.+ +.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 35789999999999999999999999999999999865 566899999999999999999999999999999999998
Q ss_pred hhhH
Q 008117 206 QATR 209 (577)
Q Consensus 206 ~~~~ 209 (577)
....
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 7653
No 121
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.9e-15 Score=128.36 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=74.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~-~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
...++|||+|||+.+|+++|+.+|..||.|.. |.|+.+ .+|.++|||||+|.+.++|..||.. |+..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 45789999999999999999999999999987 888888 7999999999999999999999997 99999999999987
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 91 ~~~ 93 (104)
T 1wg5_A 91 SSR 93 (104)
T ss_dssp ECT
T ss_pred CCH
Confidence 643
No 122
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=131.88 Aligned_cols=83 Identities=18% Similarity=0.271 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHH---HHHhhcCceEEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 008117 126 KPQTKVYVGKIAPTADSDFVL---SVLKVCGTVKSWKRAQYPSNG---TPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 199 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~---~~F~~~G~v~~~~i~~~~~tg---~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~ 199 (577)
...++|||+|||+.+++++|. .+|+.||.|..|.|+.+..++ .++|||||+|.+.++|..||..|||..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 347899999999999999999 999999999999999887644 56699999999999999999999999999999
Q ss_pred EEEEEchhh
Q 008117 200 LMLKVDQAT 208 (577)
Q Consensus 200 i~V~~a~~~ 208 (577)
|.|.|+...
T Consensus 93 l~V~~a~~k 101 (111)
T 2cpi_A 93 LKASLGTTK 101 (111)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccc
Confidence 999988653
No 123
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=6.3e-15 Score=127.13 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-----eEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-----QEL 200 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~g-----r~i 200 (577)
...++|||+|||+++|+++|+.+|..||.|..|.|+.+ |||||+|.+.++|..||..|||..|+| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999876 899999999999999999999999999 999
Q ss_pred EEEEchh
Q 008117 201 MLKVDQA 207 (577)
Q Consensus 201 ~V~~a~~ 207 (577)
.|.++..
T Consensus 86 ~V~~a~~ 92 (108)
T 1x4c_A 86 RVKVDGP 92 (108)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 9998865
No 124
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.59 E-value=3.7e-15 Score=126.17 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=70.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce--eCCeEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN--IDGQELML 202 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~--i~gr~i~V 202 (577)
..++++|||+|||+.+|+++|..+|+.||.|.+|.++.. +|||||+|.+.++|..||..|+|.. |.|+.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 346889999999999999999999999999999998753 6899999999999999999999875 78999999
Q ss_pred EEchh
Q 008117 203 KVDQA 207 (577)
Q Consensus 203 ~~a~~ 207 (577)
.|+..
T Consensus 92 ~~S~~ 96 (100)
T 3r27_A 92 NYSTS 96 (100)
T ss_dssp EECSC
T ss_pred Eeccc
Confidence 99865
No 125
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-15 Score=129.65 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|+.+|..|| ++.|.|+.++ +|+++|||||+|.+.++|..||. +|+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3568999999999999999999999999 4599999997 99999999999999999999995 7999999999999876
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 90 ~~ 91 (102)
T 1wez_A 90 ST 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 126
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.59 E-value=7.5e-16 Score=123.50 Aligned_cols=75 Identities=21% Similarity=0.345 Sum_probs=71.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 130 tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
+|||+|||+.+|+++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||. +++..|+|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999998899999999999999999999999 4999999999999875
No 127
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.8e-15 Score=121.28 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLK 203 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~L-ng~~i~gr~i~V~ 203 (577)
....++|||+|||..+++++|+.+|+.||.|..|.++.+ +|||||+|.+.++|..|+..| ||..|+|+.|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345789999999999999999999999999999999864 689999999999999999988 9999999999999
Q ss_pred Ech
Q 008117 204 VDQ 206 (577)
Q Consensus 204 ~a~ 206 (577)
|+.
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 128
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.59 E-value=3.6e-15 Score=128.80 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=71.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+.+|+++|+.+|+.||.|..|.|+ +|||||+|.+.++|..|+..|||..|+|+.|.|.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567999999999999999999999999999999987 58999999999999999999999999999999998
Q ss_pred chhh
Q 008117 205 DQAT 208 (577)
Q Consensus 205 a~~~ 208 (577)
+...
T Consensus 100 a~~~ 103 (108)
T 2jvo_A 100 SKLP 103 (108)
T ss_dssp CSCC
T ss_pred ecCC
Confidence 8653
No 129
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.9e-15 Score=125.52 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=73.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+.+|+++|+.+|..||.| .++.+ .+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3468999999999999999999999999987 56666 6899999999999999999999999999999999999999
Q ss_pred chhh
Q 008117 205 DQAT 208 (577)
Q Consensus 205 a~~~ 208 (577)
+...
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8653
No 130
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=128.70 Aligned_cols=75 Identities=27% Similarity=0.400 Sum_probs=71.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhh
Q 008117 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (577)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~~ 208 (577)
++|||+|||+.+|+++|+.+|+.||.|..|.|+.+ ++|||||+|.+.++|..|+..|||..|+|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 6799999999999999999999999999999999998764
No 131
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.59 E-value=1.6e-15 Score=127.91 Aligned_cols=80 Identities=14% Similarity=0.308 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~----~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~ 201 (577)
.+.++|||+|||+.+++++|+ .+|+.||.|..|.++. +|.++|||||+|.+.++|..|+..|||..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 457899999999999999999 9999999999998873 578889999999999999999999999999999999
Q ss_pred EEEchhh
Q 008117 202 LKVDQAT 208 (577)
Q Consensus 202 V~~a~~~ 208 (577)
|.|+...
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9998764
No 132
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.7e-15 Score=132.03 Aligned_cols=83 Identities=19% Similarity=0.319 Sum_probs=72.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||+.+|+++|+.+|..||.|..|.+..+..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45789999999999999999999999999943322222237899999999999999999999999999999999999998
Q ss_pred hhh
Q 008117 206 QAT 208 (577)
Q Consensus 206 ~~~ 208 (577)
...
T Consensus 103 ~~~ 105 (115)
T 2cpx_A 103 KNK 105 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 133
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.59 E-value=2.5e-15 Score=135.19 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCc---eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~---v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V 202 (577)
...++|||+|||+++|+++|+.+|+.||. |..|.|+.++. |+++|||||+|.+.++|..||. |||..|+|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 45789999999999999999999999999 89999999976 9999999999999999999999 9999999999999
Q ss_pred EEchhh
Q 008117 203 KVDQAT 208 (577)
Q Consensus 203 ~~a~~~ 208 (577)
.++...
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 987553
No 134
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-15 Score=131.34 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=76.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCc---eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~---v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~ 201 (577)
....++|||+|||+++|+++|+.+|+.||. |..|.|+.++. |.++|||||+|.+.++|..||. |||..|+|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 346789999999999999999999999998 89999999976 9999999999999999999999 999999999999
Q ss_pred EEEchhh
Q 008117 202 LKVDQAT 208 (577)
Q Consensus 202 V~~a~~~ 208 (577)
|.++...
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9988653
No 135
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.6e-15 Score=127.31 Aligned_cols=79 Identities=16% Similarity=0.108 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
...+|||+|||+.+|+++|+.+|+.| .|..|.|+.++ +|+++|||||+|.+.++|.+|| .||+..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45899999999999999999999999 89999999996 4999999999999999999999 589999999999998876
Q ss_pred hh
Q 008117 207 AT 208 (577)
Q Consensus 207 ~~ 208 (577)
..
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 136
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=7e-15 Score=125.24 Aligned_cols=80 Identities=20% Similarity=0.356 Sum_probs=73.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
..+.++|||+|||+.+|+++|+.+|+.|+ .|.++.++.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34679999999999999999999999874 577888888999999999999999999999999999999999999999
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 89 a~~ 91 (102)
T 2fc8_A 89 AKP 91 (102)
T ss_dssp CCC
T ss_pred ecC
Confidence 865
No 137
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.58 E-value=5.5e-15 Score=128.14 Aligned_cols=77 Identities=16% Similarity=0.172 Sum_probs=71.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcC-ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G-~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
..++|||+|||+++|+++|+.+|+.|| .|..+.|+. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 478999999999999999999999999 899998853 357899999999999999999999999999999999988
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 103 ~~ 104 (111)
T 2jvr_A 103 DN 104 (111)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 138
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=7.7e-15 Score=122.11 Aligned_cols=74 Identities=19% Similarity=0.399 Sum_probs=69.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||+++|+++|+.+|+.||.|..|.|+ +|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 467999999999999999999999999999999987 479999999999999999999999999999999987
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 78 ~~ 79 (90)
T 2dnq_A 78 KN 79 (90)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 139
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3.9e-15 Score=127.01 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=69.7
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEE
Q 008117 126 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELML 202 (577)
Q Consensus 126 ~~~~tlfVgnLp~-~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng--~~i~gr~i~V 202 (577)
.+.++|||+|||+ .+|+++|+.+|+.||.|.+|.|+.+ +|||||+|.+.++|..||..||+ ..|.|+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3678999999999 9999999999999999999999875 48999999999999999998886 4699999999
Q ss_pred EEchh
Q 008117 203 KVDQA 207 (577)
Q Consensus 203 ~~a~~ 207 (577)
.|+..
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99875
No 140
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.4e-15 Score=130.03 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=70.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLK 203 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Ln--g~~i~gr~i~V~ 203 (577)
.+.++|||+|||+.+|+++|+.+|+.||.|..|.|+.+ +|||||+|.+.++|..||..|+ +..|.|+.|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 45789999999999999999999999999999999875 6999999999999999999887 468999999999
Q ss_pred Echh
Q 008117 204 VDQA 207 (577)
Q Consensus 204 ~a~~ 207 (577)
|+..
T Consensus 103 ~a~~ 106 (119)
T 2ad9_A 103 FSNH 106 (119)
T ss_dssp ECSS
T ss_pred EccC
Confidence 9865
No 141
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.57 E-value=1.8e-14 Score=135.73 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=78.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.+. +|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 457899999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred hhh
Q 008117 206 QAT 208 (577)
Q Consensus 206 ~~~ 208 (577)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 664
No 142
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=5.2e-15 Score=125.89 Aligned_cols=75 Identities=20% Similarity=0.348 Sum_probs=69.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
..++|||+|||.++++++|+.+|+.||.|..|.|+ .++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46899999999999999999999999999999987 346999999999999999999999999999999998875
Q ss_pred h
Q 008117 207 A 207 (577)
Q Consensus 207 ~ 207 (577)
.
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 143
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=121.03 Aligned_cols=75 Identities=24% Similarity=0.426 Sum_probs=70.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+.+|+++|+.+|+.||.|..|.|+. +||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45689999999999999999999999999999999874 4999999999999999999999999999999999
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 79 a~~ 81 (92)
T 2dgt_A 79 STS 81 (92)
T ss_dssp SSC
T ss_pred ccC
Confidence 865
No 144
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8.7e-15 Score=126.38 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=72.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||..+++++|+.+|+.||.|..|.|+.+ +|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45789999999999999999999999999999999876 689999999999999999999999999999999988
Q ss_pred hhh
Q 008117 206 QAT 208 (577)
Q Consensus 206 ~~~ 208 (577)
...
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 145
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=123.21 Aligned_cols=77 Identities=17% Similarity=0.285 Sum_probs=70.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|+.+|+.||.|. +.++. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4578999999999999999999999999997 66654 467899999999999999999999999999999999988
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 92 ~~ 93 (97)
T 2e5j_A 92 RQ 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 146
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=122.55 Aligned_cols=76 Identities=16% Similarity=0.395 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLK 203 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~--gr~i~V~ 203 (577)
.+.++|||+|||+.+|+++|+.+|+.||.|..|.++.+ +|||||+|.+.++|..||..|||..|. |+.|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 35689999999999999999999999999999998754 689999999999999999999999999 9999999
Q ss_pred Echh
Q 008117 204 VDQA 207 (577)
Q Consensus 204 ~a~~ 207 (577)
|+..
T Consensus 89 ~a~~ 92 (97)
T 1why_A 89 FAKS 92 (97)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9865
No 147
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=4.4e-15 Score=125.02 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
..+.++|||+|||+.+|+++|+.+|+.||.|..+ ..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4467999999999999999999999999988766 24789999999999999999999999999999999999998
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 88 a~~ 90 (96)
T 1fjc_A 88 TGE 90 (96)
T ss_dssp CSS
T ss_pred cCC
Confidence 854
No 148
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.55 E-value=1.7e-15 Score=137.52 Aligned_cols=84 Identities=15% Similarity=0.269 Sum_probs=73.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEE--E---eecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWK--R---AQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 199 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~--i---~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~ 199 (577)
..+.++|||+|||+.+|+++|+.+|+.||.|..|. + +....+|.++|||||+|.+.++|..||..|||..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34578999999999999999999999999987751 1 111247999999999999999999999999999999999
Q ss_pred EEEEEchhh
Q 008117 200 LMLKVDQAT 208 (577)
Q Consensus 200 i~V~~a~~~ 208 (577)
|.|.|+...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998664
No 149
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.55 E-value=4.1e-15 Score=126.76 Aligned_cols=80 Identities=26% Similarity=0.377 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||. +|..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 356899999999999999999999999999999999997 99999999999999999999998 999999999999887
Q ss_pred hhh
Q 008117 206 QAT 208 (577)
Q Consensus 206 ~~~ 208 (577)
...
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 653
No 150
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.1e-14 Score=119.39 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=69.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
....++|||+|||+.+|+++|+.+|+.||.|..|.|+. +||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999974 4999999999999999999999999999999998
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 78 a~~ 80 (90)
T 2dnp_A 78 STK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 865
No 151
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3.7e-14 Score=130.63 Aligned_cols=81 Identities=17% Similarity=0.322 Sum_probs=77.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|..+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred h
Q 008117 206 Q 206 (577)
Q Consensus 206 ~ 206 (577)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 152
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=123.38 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=68.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELMLK 203 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng--~~i~gr~i~V~ 203 (577)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.+ +|||||+|.+.++|..||..|++ ..|.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45789999999999999999999999999999998764 68999999999999999998865 45999999999
Q ss_pred Echh
Q 008117 204 VDQA 207 (577)
Q Consensus 204 ~a~~ 207 (577)
|+..
T Consensus 87 ~a~~ 90 (104)
T 1wex_A 87 YSTS 90 (104)
T ss_dssp ECSS
T ss_pred EccC
Confidence 9865
No 153
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=7.6e-15 Score=127.40 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+. ++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999998864 4689999999999999999999999999999999998
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 82 ~~ 83 (111)
T 1whx_A 82 PI 83 (111)
T ss_dssp ET
T ss_pred CC
Confidence 65
No 154
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=122.08 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||+.+|+++|+.+|+.||.|..|.|+.+ +|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 45789999999999999999999999999999998754 689999999999999999999999999999999988
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 87 ~~ 88 (99)
T 2cpj_A 87 CH 88 (99)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 155
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.54 E-value=2.9e-14 Score=123.32 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=69.2
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 126 KPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 126 ~~~~tlfVgnLp~~-~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
...++|||+|||+. +++++|+.+|+.||.|..|.| ++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45689999999999 999999999999999999988 468999999999999999999999999999999998
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 97 a~~ 99 (110)
T 1wf1_A 97 AGE 99 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 864
No 156
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=5.3e-16 Score=135.64 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=78.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~--------~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~g 197 (577)
.+.++|||+|||+.+++++|+.+|+.||.|.. |.|+.++.+|.++|||||+|.+.++|..||..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999998 8999998899999999999999999999999999999999
Q ss_pred eEEEEEEchhh
Q 008117 198 QELMLKVDQAT 208 (577)
Q Consensus 198 r~i~V~~a~~~ 208 (577)
+.|.|.++...
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999988654
No 157
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=121.33 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~-~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
...++|||+|||+.+|+++|+.+|+.||.|..| .|+.++.+| .|||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457899999999999999999999999999999 587775443 399999999999999999999999999999998
Q ss_pred chhh
Q 008117 205 DQAT 208 (577)
Q Consensus 205 a~~~ 208 (577)
+...
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8653
No 158
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.53 E-value=3.5e-14 Score=121.24 Aligned_cols=75 Identities=15% Similarity=0.399 Sum_probs=69.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|||+.+|+++|+.+|..||.|..|.|+. +||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4578999999999999999999999999999999863 59999999999999999999999999999999998
Q ss_pred hhh
Q 008117 206 QAT 208 (577)
Q Consensus 206 ~~~ 208 (577)
...
T Consensus 81 ~~~ 83 (103)
T 2dgu_A 81 KPP 83 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 159
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=6e-14 Score=118.84 Aligned_cols=75 Identities=17% Similarity=0.374 Sum_probs=69.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhc--CceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008117 125 EKPQTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~--G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V 202 (577)
..+.++|||+|||+.+|+++|+.+|+.| |.|..|.+. +|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3467899999999999999999999999 999998874 479999999999999999999999999999999
Q ss_pred EEchh
Q 008117 203 KVDQA 207 (577)
Q Consensus 203 ~~a~~ 207 (577)
.|+..
T Consensus 84 ~~a~~ 88 (99)
T 2cpd_A 84 TLAKP 88 (99)
T ss_dssp ECCCC
T ss_pred EECCC
Confidence 98865
No 160
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.53 E-value=2.5e-14 Score=130.77 Aligned_cols=77 Identities=25% Similarity=0.399 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|+.+|+.||.|.+|.|+.+ ++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 45789999999999999999999999999999999876 5799999999999999999999999999999999998
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 146 ~~ 147 (150)
T 2i2y_A 146 NG 147 (150)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 161
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=3e-14 Score=123.36 Aligned_cols=77 Identities=13% Similarity=0.218 Sum_probs=69.3
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 008117 125 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELM 201 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~-~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Ln--g~~i~gr~i~ 201 (577)
..+.++|||+|||++ +|+++|+.+|+.||.|..|.|+. ++|||||+|.+.++|..||..|| +..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345889999999998 99999999999999999999974 36999999999999999999885 5679999999
Q ss_pred EEEchh
Q 008117 202 LKVDQA 207 (577)
Q Consensus 202 V~~a~~ 207 (577)
|.|+..
T Consensus 96 V~~a~~ 101 (112)
T 1x4f_A 96 VDLSEK 101 (112)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 999865
No 162
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.7e-14 Score=121.57 Aligned_cols=74 Identities=18% Similarity=0.425 Sum_probs=69.1
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008117 126 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (577)
Q Consensus 126 ~~~~tlfVgnLp~-~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~ 204 (577)
.+.++|||+|||+ .+|+++|+.+|+.||.|..|.|. +|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4688999999999 99999999999999999999984 58999999999999999999999999999999998
Q ss_pred chh
Q 008117 205 DQA 207 (577)
Q Consensus 205 a~~ 207 (577)
+..
T Consensus 80 a~~ 82 (96)
T 2kvi_A 80 SSS 82 (96)
T ss_dssp EEC
T ss_pred cCc
Confidence 865
No 163
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.51 E-value=5.8e-14 Score=130.44 Aligned_cols=79 Identities=22% Similarity=0.447 Sum_probs=76.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
..++|||+|||+.+|+++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.||
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 3789999999999999999999999999999999999889999999999999999999999999999999999999986
No 164
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.1e-14 Score=118.74 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=68.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|+.+|+.||.|..| +.++.+|. ||||+|.+.++|..||. |||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 356899999999999999999999999999987 55555666 99999999999999999 9999999999999866
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 80 ~~ 81 (94)
T 2e5g_A 80 EQ 81 (94)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 165
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.9e-14 Score=127.06 Aligned_cols=80 Identities=23% Similarity=0.219 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCce----EEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV----KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v----~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~ 201 (577)
...++|||+|||+++|+++|+.+|+.||.| ..|.|+.+ .+|+++|||||+|.+.++|..||.. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 457899999999999999999999999975 68999998 5899999999999999999999995 99999999999
Q ss_pred EEEchh
Q 008117 202 LKVDQA 207 (577)
Q Consensus 202 V~~a~~ 207 (577)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 987754
No 166
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.51 E-value=2.2e-14 Score=127.07 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceE--EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~--~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~ 203 (577)
...++|||+|||+.+|+++|+.+|+.| .|+ .|.|+.++. |.++|||||+|.+.++|.+||. +++..|+|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 356889999999999999999999999 576 999999976 9999999999999999999998 48899999999998
Q ss_pred Echh
Q 008117 204 VDQA 207 (577)
Q Consensus 204 ~a~~ 207 (577)
.+..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 7644
No 167
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.1e-14 Score=118.35 Aligned_cols=75 Identities=15% Similarity=0.332 Sum_probs=67.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCc-eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-ceeCCeEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK-FNIDGQELMLK 203 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~-v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng-~~i~gr~i~V~ 203 (577)
...++|||+|||+++|+++|+.+|+.||. |..+.+. ++|||||+|.+.++|..||..||| ..|+|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45789999999999999999999999999 6655553 368999999999999999999999 99999999999
Q ss_pred Echh
Q 008117 204 VDQA 207 (577)
Q Consensus 204 ~a~~ 207 (577)
|+..
T Consensus 79 ~a~~ 82 (93)
T 2cqh_A 79 YSVS 82 (93)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9865
No 168
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.50 E-value=4.1e-14 Score=117.23 Aligned_cols=74 Identities=15% Similarity=0.302 Sum_probs=69.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
..++|||+|||+.+++++|+.+|+.| .|..|.|. .++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 56899999999999999999999999 99999884 568999999999999999999999999999999999875
Q ss_pred h
Q 008117 207 A 207 (577)
Q Consensus 207 ~ 207 (577)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 169
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.50 E-value=8.1e-15 Score=132.28 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=72.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+++|+++|+.+|+.|| |+.|.|+.++. |+++|||||+|.+.++|..|| .||+..|+|+.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4568999999999999999999999999 77999999975 999999999999999999999 68999999999999876
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 121 ~~ 122 (139)
T 2hgn_A 121 ST 122 (139)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 170
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.4e-13 Score=116.06 Aligned_cols=74 Identities=15% Similarity=0.284 Sum_probs=68.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
.+.++|||+|| .+|+++|+.+|..||.|..|.|. .++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35789999996 89999999999999999999984 45799999999999999999999999999999999988
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 85 ~~ 86 (97)
T 1x5p_A 85 RK 86 (97)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 171
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.49 E-value=1e-13 Score=134.28 Aligned_cols=81 Identities=17% Similarity=0.361 Sum_probs=75.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
...+|||+|||+.+|+++|+.+|+.||.|..|.|+.+. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35789999999999999999999999999999999983 5689999999999999999999999999999999999997
Q ss_pred hhH
Q 008117 207 ATR 209 (577)
Q Consensus 207 ~~~ 209 (577)
...
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 654
No 172
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.49 E-value=3.8e-14 Score=123.72 Aligned_cols=74 Identities=23% Similarity=0.322 Sum_probs=65.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeE-----E
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE-----L 200 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~-----i 200 (577)
...++|||+|||+++|+++|+.+|..||.|..|.|+.+ |||||+|.+.++|..||..|||..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35789999999999999999999999999999999765 89999999999999999999999999998 6
Q ss_pred EEEEch
Q 008117 201 MLKVDQ 206 (577)
Q Consensus 201 ~V~~a~ 206 (577)
.|..+.
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 665443
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.49 E-value=9.1e-14 Score=134.06 Aligned_cols=83 Identities=29% Similarity=0.492 Sum_probs=78.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||..+|+++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred hhh
Q 008117 206 QAT 208 (577)
Q Consensus 206 ~~~ 208 (577)
...
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 653
No 174
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7e-14 Score=121.24 Aligned_cols=76 Identities=22% Similarity=0.338 Sum_probs=68.4
Q ss_pred CCCceEEE--cCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-----CCe
Q 008117 126 KPQTKVYV--GKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI-----DGQ 198 (577)
Q Consensus 126 ~~~~tlfV--gnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i-----~gr 198 (577)
.+..+||| |||++.+++++|+.+|+.||.|..|.|+.+ +|||||+|.+.++|..|+..|||..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45788999 789999999999999999999999987542 68999999999999999999999998 689
Q ss_pred EEEEEEchh
Q 008117 199 ELMLKVDQA 207 (577)
Q Consensus 199 ~i~V~~a~~ 207 (577)
.|.|.|+..
T Consensus 97 ~l~v~~a~~ 105 (114)
T 2cq2_A 97 TLYLNFVEK 105 (114)
T ss_dssp ECEEEEESC
T ss_pred EEEEEeccc
Confidence 999988754
No 175
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.48 E-value=1.1e-13 Score=115.07 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=62.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--CCeEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI--DGQELMLK 203 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i--~gr~i~V~ 203 (577)
.+.++|||||||+++|+++|+.+|+.||.|.+|.|+.+ ++|||||+|.+.++|.. |+|..+ .|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 46889999999999999999999999999999999874 68999999999999873 466554 59999999
Q ss_pred Echhh
Q 008117 204 VDQAT 208 (577)
Q Consensus 204 ~a~~~ 208 (577)
++...
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 88654
No 176
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=114.53 Aligned_cols=71 Identities=18% Similarity=0.309 Sum_probs=63.9
Q ss_pred CceEEEcCCCCCCCHHH----HHHHHhhcC-ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008117 128 QTKVYVGKIAPTADSDF----VLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~----L~~~F~~~G-~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V 202 (577)
.+.|||+|||+.++.++ |..+|+.|| .|.+| +| |||||.|.+.++|.+|+..|||..|.|+.|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 34499999999999987 558999995 99998 34 99999999999999999999999999999999
Q ss_pred EEchhh
Q 008117 203 KVDQAT 208 (577)
Q Consensus 203 ~~a~~~ 208 (577)
.|+...
T Consensus 79 ~~A~~~ 84 (96)
T 2diu_A 79 SFTPKN 84 (96)
T ss_dssp ESSCCS
T ss_pred EecCCC
Confidence 988764
No 177
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.47 E-value=1.5e-13 Score=126.47 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=70.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 204 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~g--r~i~V~~ 204 (577)
...+|||+||++.+|+++|+.+|+.||.|..|.|+.. .++|||||+|.+.++|..|+..|||..|.| +.|+|.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 4578999999999999999999999999999998654 257899999999999999999999999965 9999999
Q ss_pred chhh
Q 008117 205 DQAT 208 (577)
Q Consensus 205 a~~~ 208 (577)
+...
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8653
No 178
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.47 E-value=2.4e-13 Score=129.28 Aligned_cols=82 Identities=21% Similarity=0.443 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45799999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 192 ~~ 193 (198)
T 2yh0_A 192 SV 193 (198)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 179
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.46 E-value=6.9e-16 Score=165.41 Aligned_cols=64 Identities=9% Similarity=0.061 Sum_probs=49.7
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|.+++..++.+..+.. .+..+|.++|||||+|.+.++|..||..||+.
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 45699999999999999988552322211111 23568999999999999999999999999875
No 180
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.46 E-value=2.5e-13 Score=120.48 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=69.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEE
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELMLK 203 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~-gFV~f~~~~~A~~Al~~Lng~~i~g--r~i~V~ 203 (577)
....|||+||++.+|+++|..+|+.||.|..|.|+.. .+|| |||+|.+.++|..|+..|||..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 4567899999999999999999999999999988764 2577 9999999999999999999999988 899999
Q ss_pred Echhh
Q 008117 204 VDQAT 208 (577)
Q Consensus 204 ~a~~~ 208 (577)
|+...
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 88653
No 181
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.46 E-value=1.5e-13 Score=113.22 Aligned_cols=71 Identities=24% Similarity=0.418 Sum_probs=66.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhc----C-------ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 194 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~----G-------~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~ 194 (577)
.+.++|||+|||+.+++++|+.+|+.| | .|.++.+..+ +|||||+|.+.++|..|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8999998754 699999999999999999 899999
Q ss_pred eCCeEEEEE
Q 008117 195 IDGQELMLK 203 (577)
Q Consensus 195 i~gr~i~V~ 203 (577)
|+|+.|.|.
T Consensus 77 ~~g~~l~V~ 85 (87)
T 2hzc_A 77 FQGQSLKIR 85 (87)
T ss_dssp ETTEECEEE
T ss_pred ECCeEEEEe
Confidence 999999985
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.46 E-value=6.5e-14 Score=129.45 Aligned_cols=80 Identities=21% Similarity=0.382 Sum_probs=76.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
..++|||+|||+.+|+++|..+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+. |||..|+|+.|.|.|+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 36799999999999999999999999999999999998899999999999999999999998 89999999999999986
Q ss_pred h
Q 008117 207 A 207 (577)
Q Consensus 207 ~ 207 (577)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 183
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=120.33 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=69.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN---GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~t---g~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V 202 (577)
...++|||+|||+.+|+++|+.+|+.||.|. +.++.+..+ |.++|||||+|.+.++|..||..|+ .++|+.|.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 888887766 7999999999999999999999884 478888887
Q ss_pred EEch
Q 008117 203 KVDQ 206 (577)
Q Consensus 203 ~~a~ 206 (577)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6543
No 184
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.46 E-value=3e-13 Score=124.98 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=75.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 204 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~g--r~i~V~~ 204 (577)
..++|||+|||..+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..|||..|.| +.|.|.|
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 46899999999999999999999999999999999998899999999999999999999999999999988 9999987
Q ss_pred c
Q 008117 205 D 205 (577)
Q Consensus 205 a 205 (577)
|
T Consensus 168 A 168 (168)
T 1b7f_A 168 A 168 (168)
T ss_dssp C
T ss_pred C
Confidence 5
No 185
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.45 E-value=2.4e-13 Score=128.97 Aligned_cols=81 Identities=15% Similarity=0.343 Sum_probs=75.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
..++|||+|||+.+|+++|+.+|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+||.. +|..|+|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 468999999999999999999999999999999999988999999999999999999999986 8999999999999987
Q ss_pred hh
Q 008117 207 AT 208 (577)
Q Consensus 207 ~~ 208 (577)
..
T Consensus 182 ~k 183 (196)
T 1l3k_A 182 SK 183 (196)
T ss_dssp --
T ss_pred Ch
Confidence 65
No 186
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.45 E-value=5.2e-13 Score=114.56 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHHHHhhcCceEEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 008117 126 KPQTKVYVGKIAP-----TADSDFVLSVLKVCGTVKSWKRAQYPSN-GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 199 (577)
Q Consensus 126 ~~~~tlfVgnLp~-----~~te~~L~~~F~~~G~v~~~~i~~~~~t-g~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~ 199 (577)
.++++|+|.||.. .-++++|+.+|++||.|.+|.|+.++.+ +.++|||||+|.+.++|..|+..|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3578999999963 2368899999999999999999988644 689999999999999999999999999999999
Q ss_pred EEEEEchh
Q 008117 200 LMLKVDQA 207 (577)
Q Consensus 200 i~V~~a~~ 207 (577)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 187
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=4.8e-13 Score=117.98 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=66.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 204 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~-gFV~f~~~~~A~~Al~~Lng~~i~g--r~i~V~~ 204 (577)
...|||+||++.+|+++|+.+|+.||.|..|.|+.. .|| |||+|.+.++|..|+..|||..|.| +.|.|.|
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 345789999999999999999999999999998652 276 9999999999999999999999987 6899988
Q ss_pred chhh
Q 008117 205 DQAT 208 (577)
Q Consensus 205 a~~~ 208 (577)
+...
T Consensus 99 Ak~~ 102 (124)
T 2e5i_A 99 ARPT 102 (124)
T ss_dssp CSCS
T ss_pred ecCC
Confidence 8653
No 188
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.44 E-value=3.8e-13 Score=123.87 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=74.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeE--EEEEE
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE--LMLKV 204 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~--i~V~~ 204 (577)
..++|||+|||..+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..|||..|+|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4678999999999999999999999999999999999889999999999999999999999999999999975 77776
Q ss_pred c
Q 008117 205 D 205 (577)
Q Consensus 205 a 205 (577)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 189
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.42 E-value=3.4e-13 Score=118.82 Aligned_cols=75 Identities=15% Similarity=0.281 Sum_probs=68.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|| ++|+++|+.+|+.||.|..|.|. .++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45789999996 69999999999999999999985 45799999999999999999999999999999999998
Q ss_pred hhh
Q 008117 206 QAT 208 (577)
Q Consensus 206 ~~~ 208 (577)
...
T Consensus 109 ~~~ 111 (121)
T 2bz2_A 109 RKQ 111 (121)
T ss_dssp CSS
T ss_pred CCC
Confidence 653
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.42 E-value=4.5e-13 Score=124.53 Aligned_cols=79 Identities=14% Similarity=0.344 Sum_probs=73.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC---CeEEEEE
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMLK 203 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~---gr~i~V~ 203 (577)
..++|||+|||+.+|+++|+.+|+.||.|..|.++.+. +|.++|||||+|.+.++|..|+..|||..|. |+.|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 46799999999999999999999999999999999985 6999999999999999999999999998776 4999999
Q ss_pred Ech
Q 008117 204 VDQ 206 (577)
Q Consensus 204 ~a~ 206 (577)
|+.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 191
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.41 E-value=7.3e-13 Score=126.44 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=72.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~ 206 (577)
..++|||+|||+.+|+++|+.+|+.||.|..|.|+.+. +|.++|||||+|.+.++|..||..+ +..|+|+.|.|.++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 35899999999999999999999999999999999985 6999999999999999999999864 569999999998865
Q ss_pred h
Q 008117 207 A 207 (577)
Q Consensus 207 ~ 207 (577)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 192
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3.3e-13 Score=111.63 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=63.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.+ ++|||||+|.+.++|..|+. .+..+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35789999999999999999999999999999999764 67999999999999975432 234558999999877
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 76 ~~ 77 (88)
T 1wf0_A 76 EP 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.36 E-value=1.4e-12 Score=121.63 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a 205 (577)
...++|||+|||+.+|+++|+.+|+.||.|..+ ..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 357899999999999999999999999988766 368999999999999999999999999999999999999998
Q ss_pred hh
Q 008117 206 QA 207 (577)
Q Consensus 206 ~~ 207 (577)
..
T Consensus 172 ~~ 173 (175)
T 1fje_B 172 GE 173 (175)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 194
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.36 E-value=9e-13 Score=129.16 Aligned_cols=78 Identities=19% Similarity=0.291 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCCCC---------CHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 008117 125 EKPQTKVYVGKIAPTA---------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~~---------te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i 195 (577)
....++||||||+..+ ++++|+.+|+.||.|.+|.|+.+ +|||||+|.+.++|..|+..|||..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568999999999998 79999999999999999999864 69999999999999999999999999
Q ss_pred ------------CCeEEEEEEchhh
Q 008117 196 ------------DGQELMLKVDQAT 208 (577)
Q Consensus 196 ------------~gr~i~V~~a~~~ 208 (577)
.|+.|.|.||...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999999764
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.33 E-value=2e-12 Score=124.55 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCce--EEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe----E
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV--KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ----E 199 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v--~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr----~ 199 (577)
.+.++|||+|||+.+|+++|+.+|+.||.| ..++++.+. |..+|||||+|.+.++|..||..|||..|.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 357899999999999999999999999999 899988773 66679999999999999999999999999877 5
Q ss_pred EEEEEc
Q 008117 200 LMLKVD 205 (577)
Q Consensus 200 i~V~~a 205 (577)
+.|+|+
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777765
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.29 E-value=8.6e-12 Score=106.93 Aligned_cols=83 Identities=17% Similarity=0.077 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCC--CCC--------HHHHHHHHhhcCceEEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCc
Q 008117 126 KPQTKVYVGKIAP--TAD--------SDFVLSVLKVCGTVKSWKRAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKF 193 (577)
Q Consensus 126 ~~~~tlfVgnLp~--~~t--------e~~L~~~F~~~G~v~~~~i~~~~~t--g~~kg~gFV~f~~~~~A~~Al~~Lng~ 193 (577)
.+++.|.|.|+-. .+. .++|+.+|++||.|.+|.|+.+..+ +.++|||||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4578899999832 332 3689999999999999999988654 468999999999999999999999999
Q ss_pred eeCCeEEEEEEchhh
Q 008117 194 NIDGQELMLKVDQAT 208 (577)
Q Consensus 194 ~i~gr~i~V~~a~~~ 208 (577)
.|+|+.|.|.+....
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999987553
No 197
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.2e-11 Score=107.18 Aligned_cols=78 Identities=12% Similarity=0.136 Sum_probs=67.6
Q ss_pred CCCceEEEcCCCCCCC-----------HHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 008117 126 KPQTKVYVGKIAPTAD-----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 194 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~t-----------e~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~ 194 (577)
.+.++|+|.||..... +++|+.+|++||.|..|.| .+. .++|||||+|.+.++|..||..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 3578999999954432 5799999999999999965 443 378999999999999999999999999
Q ss_pred eCCeEEEEEEchh
Q 008117 195 IDGQELMLKVDQA 207 (577)
Q Consensus 195 i~gr~i~V~~a~~ 207 (577)
|+|+.|.|.++..
T Consensus 89 ~~gr~l~v~~a~~ 101 (112)
T 2dit_A 89 FGGRQITAQAWDG 101 (112)
T ss_dssp ETTEECEEEECCS
T ss_pred ECCcEEEEEEeCC
Confidence 9999999998765
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.26 E-value=2.8e-12 Score=109.75 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=64.7
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 008117 133 VGKIAPTADSDFVLSVL------------KVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (577)
Q Consensus 133 VgnLp~~~te~~L~~~F------------~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i 200 (577)
+.||+..+++++|+.+| ++||.|.+|.|+.+. +|.++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888777766 999999999999885 58999999999999999999999999999999999
Q ss_pred EEEEc
Q 008117 201 MLKVD 205 (577)
Q Consensus 201 ~V~~a 205 (577)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.26 E-value=1.5e-11 Score=122.86 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=73.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeC---CeEEEE
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNID---GQELML 202 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~L-ng~~i~---gr~i~V 202 (577)
+.++|||+|||+.+|+++|+.+|+.||.|..|.|+.+ .+|.++|||||+|.+.++|..||..| +|..+. |+.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999999999999999999999999999999999 59999999999999999999999999 555555 999999
Q ss_pred EEchh
Q 008117 203 KVDQA 207 (577)
Q Consensus 203 ~~a~~ 207 (577)
.++..
T Consensus 174 ~~~~~ 178 (261)
T 3sde_A 174 EPMEQ 178 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 88764
No 200
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.25 E-value=1.4e-11 Score=117.30 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC-ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 203 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G-~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~-gr~i~V~ 203 (577)
.+.++|||+|||..+++++|+.+|+.|| .|..|.|+.+ .+|||||+|.+.++|..|+..|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4579999999999999999999999999 9999998664 2689999999999999999999999999 9999999
Q ss_pred Echh
Q 008117 204 VDQA 207 (577)
Q Consensus 204 ~a~~ 207 (577)
|+..
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9864
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.24 E-value=2e-11 Score=106.78 Aligned_cols=81 Identities=17% Similarity=0.080 Sum_probs=70.8
Q ss_pred CCceEEEcCCCC--C---CCHHHHHHHHhhcCceEEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 008117 127 PQTKVYVGKIAP--T---ADSDFVLSVLKVCGTVKSWKRAQYPS----NGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (577)
Q Consensus 127 ~~~tlfVgnLp~--~---~te~~L~~~F~~~G~v~~~~i~~~~~----tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~g 197 (577)
++++|+|.|+-. . --+++|+..|++||.|.+|.|+.+.. ++.++||+||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999842 1 23579999999999999999998864 45778999999999999999999999999999
Q ss_pred eEEEEEEchh
Q 008117 198 QELMLKVDQA 207 (577)
Q Consensus 198 r~i~V~~a~~ 207 (577)
+.|.|.|...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998755
No 202
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.21 E-value=2.7e-11 Score=118.50 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC-ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 203 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G-~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~-gr~i~V~ 203 (577)
.+.++|||+|||+.+++++|+.+|+.|| .|..|.|+.. .+|||||+|.+.++|..||..|||..|+ |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4579999999999999999999999999 9999998653 3689999999999999999999999999 9999999
Q ss_pred Echh
Q 008117 204 VDQA 207 (577)
Q Consensus 204 ~a~~ 207 (577)
|+..
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9865
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.12 E-value=1.1e-10 Score=120.22 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=66.2
Q ss_pred CCCCceEEEcC--CCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC---Ce-
Q 008117 125 EKPQTKVYVGK--IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQ- 198 (577)
Q Consensus 125 ~~~~~tlfVgn--Lp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~---gr- 198 (577)
..++.+||||| |++.+|+++|+.+|++||.|.+|.|.. ++|||||+|.+.++|.+||..|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45688999999 588999999999999999999987743 4699999999999999999999999883 45
Q ss_pred -EEEEEEchh
Q 008117 199 -ELMLKVDQA 207 (577)
Q Consensus 199 -~i~V~~a~~ 207 (577)
.|.|.|...
T Consensus 89 ~~ly~~~~~~ 98 (345)
T 3tht_A 89 ITLYLNFVEK 98 (345)
T ss_dssp EECEEEECSS
T ss_pred eEEEEEEeec
Confidence 577777643
No 204
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.11 E-value=3.2e-11 Score=110.87 Aligned_cols=131 Identities=10% Similarity=0.021 Sum_probs=83.8
Q ss_pred EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhhHHHHHhhhhhhhhccccccccccccccC
Q 008117 157 SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQATREYLERYVDKKTENTKKLKETQDAGAGK 236 (577)
Q Consensus 157 ~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~n 236 (577)
+++|+.+. ..++|||||+|.+..+|.+|+..+++....+..+.+.......... .................+||+|
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~v~n 77 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVT--EGSHHHHHHMDVEGMTSLKVDN 77 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEE--CCCCCSSCCCCCCBCCEEEEES
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccc--ccccccccccCCCCCCEEEEeC
Confidence 56777774 4689999999999999999998887643333333332111100000 0000000111122234469999
Q ss_pred CCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 237 EDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 237 l~~~~~~~~l~e~~k---s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
|+..+++++|.+++. .+...... .+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 78 l~~~~~~~~l~~~F~~~G~v~~~~i~--~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 135 (158)
T 2kn4_A 78 LTYRTSPDTLRRVFEKYGRVGDVYIP--RDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 135 (158)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEECC--CCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEe--ecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 999999999998844 22111111 12468999999999999999999999998874
No 205
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.9e-10 Score=94.44 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008117 138 PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (577)
Q Consensus 138 ~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~ 207 (577)
..+++++|+.+|++||.|..|.|+ +.++|||||+|.+.++|..||..+++ +.|+.|.|.|+..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 568999999999999999999987 46789999999999999999997554 6799999998755
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.02 E-value=1.1e-09 Score=95.15 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=64.7
Q ss_pred CCceEEEcCCCCCCC----------HHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008117 127 PQTKVYVGKIAPTAD----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (577)
Q Consensus 127 ~~~tlfVgnLp~~~t----------e~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~ 196 (577)
+++.|.+.|+-.... .++|+..|++||.|.+|.|..+. ++|||||+|.+.++|.+|+..|||..|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 466788888743221 24889999999999999986652 5899999999999999999999999999
Q ss_pred CeEEEEEEchh
Q 008117 197 GQELMLKVDQA 207 (577)
Q Consensus 197 gr~i~V~~a~~ 207 (577)
|+.|.|.|+..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999854
No 207
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.95 E-value=1.5e-10 Score=105.56 Aligned_cols=129 Identities=17% Similarity=0.112 Sum_probs=85.9
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEEchhhHHHHHhhhh-hhhhcccccccccccccc
Q 008117 158 WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKVDQATREYLERYVD-KKTENTKKLKETQDAGAG 235 (577)
Q Consensus 158 ~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~L-ng~~i~gr~i~V~~a~~~~~~~~~~~~-~k~~~~~~~~~~~~~~v~ 235 (577)
+.+..+ ....+|+++|+|.+.++|.+|+..| ||..|+| .|.|.++............ ..............+||+
T Consensus 3 ~al~l~--g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~ 79 (150)
T 2i2y_A 3 YKLILN--GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVG 79 (150)
T ss_dssp EEEEEC--CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEE
T ss_pred eEeeec--cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEe
Confidence 344443 4567899999999999999999999 9999999 9999876542111000000 000011122233446999
Q ss_pred CCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 236 KEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 236 nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
||+..+++.+|.+++..++.+...... ..++|||||+|.+.++|..|+..|++.
T Consensus 80 nl~~~~t~~~l~~~F~~~G~i~~v~i~----~~~~g~afV~f~~~~~a~~A~~~l~g~ 133 (150)
T 2i2y_A 80 NLGNNGNKTELERAFGYYGPLRSVWVA----RNPPGFAFVEFEDPRDAADAVRELDGR 133 (150)
T ss_dssp SCCSCCSCHHHHHHHHHHSCEEEEEEC----SSSCSEEEEEESSHHHHHHHHHHHSSS
T ss_pred CCCCCCCHHHHHHHHHhhCCEEEEEEe----eCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 999999999999884411111111010 016899999999999999999988874
No 208
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=2.7e-09 Score=87.44 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=62.3
Q ss_pred CCCceEEEcCCC----CCCCH----HHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 008117 126 KPQTKVYVGKIA----PTADS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (577)
Q Consensus 126 ~~~~tlfVgnLp----~~~te----~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~g 197 (577)
++..||+|.-++ .++-+ .+|...|..||.|..++|+.+ .+||+|.+.++|.+||. |||..|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCC
Confidence 356788888776 23434 579999999999999999887 38999999999999999 99999999
Q ss_pred eEEEEEEchh
Q 008117 198 QELMLKVDQA 207 (577)
Q Consensus 198 r~i~V~~a~~ 207 (577)
+.|+|+++..
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999987654
No 209
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=8.9e-09 Score=89.72 Aligned_cols=87 Identities=15% Similarity=0.136 Sum_probs=73.8
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHhC--CceeCCeEE
Q 008117 125 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES-AEGVLRALRLLN--KFNIDGQEL 200 (577)
Q Consensus 125 ~~~~~tlfVgnLp~~-~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~-~~~A~~Al~~Ln--g~~i~gr~i 200 (577)
..+++.|||+||++. ++.++|+.+|+.||.|.+|.++.+. .+|||.|.+ ..+|..|+..|| |..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 456899999999999 9999999999999999999998874 369999999 899999999994 889999888
Q ss_pred EEEEch--hhHHHHHhhhh
Q 008117 201 MLKVDQ--ATREYLERYVD 217 (577)
Q Consensus 201 ~V~~a~--~~~~~~~~~~~ 217 (577)
.+.+.. .-+.|+.....
T Consensus 89 ~~evL~GeeE~~yw~Ki~e 107 (121)
T 1owx_A 89 TWEVLEGEVEKEALKKIIE 107 (121)
T ss_dssp EEEECCHHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHH
Confidence 887654 34556665554
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=2.2e-08 Score=82.43 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=60.7
Q ss_pred CCCceEEEcCCCCC-----C-CH---HHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008117 126 KPQTKVYVGKIAPT-----A-DS---DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (577)
Q Consensus 126 ~~~~tlfVgnLp~~-----~-te---~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~ 196 (577)
++..||+|.-++.. + .+ .+|.+.|..||.|..++|+.+. +||+|.+.++|.+||. |||+.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45789999988743 3 32 4689999999999999999882 9999999999999999 9999999
Q ss_pred CeEEEEEE
Q 008117 197 GQELMLKV 204 (577)
Q Consensus 197 gr~i~V~~ 204 (577)
|+.|+|++
T Consensus 84 Gr~L~V~~ 91 (95)
T 1ufw_A 84 GRAVKISG 91 (95)
T ss_dssp TEEEEEEC
T ss_pred CeEEEEec
Confidence 99999975
No 211
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.53 E-value=1.6e-07 Score=91.12 Aligned_cols=69 Identities=19% Similarity=0.072 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHhhcCceEEEEEeecC----CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008117 139 TADSDFVLSVLKVCGTVKSWKRAQYP----SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (577)
Q Consensus 139 ~~te~~L~~~F~~~G~v~~~~i~~~~----~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~ 207 (577)
.-.+++|...|++||.|.++.|+.+. .+|.++||+||+|.+.++|.+|+..|||..|+|+.|.|.+...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 34557999999999999999998554 4558999999999999999999999999999999999998754
No 212
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.30 E-value=4.3e-07 Score=75.96 Aligned_cols=65 Identities=8% Similarity=0.032 Sum_probs=50.0
Q ss_pred cccccccCCCcccchhhhcCCCCCCcc--cccCC-CCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPEN--LKDNE-TGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~--~k~~~-~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+.+||+||+..+++++|.+++..++. ..+.. ..+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~ 76 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSL 76 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSS
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCC
Confidence 344799999999999999998552221 11111 123678999999999999999999999999874
No 213
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.24 E-value=3.5e-07 Score=75.75 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=46.9
Q ss_pred ccccccCCCcccchhhhcCCCCCCc-ccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPE-NLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLT 291 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~-~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~ 291 (577)
+++||+|||..+++++|.+++...+ ....... .+..+|.++|||||+|.+.++|..|++.++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~ 65 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ 65 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcC
Confidence 4579999999999999998844111 1111111 236789999999999999999999998764
No 214
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.24 E-value=1.8e-07 Score=83.63 Aligned_cols=107 Identities=6% Similarity=0.017 Sum_probs=50.0
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCC
Q 008117 171 GFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPT 250 (577)
Q Consensus 171 g~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ 250 (577)
.|.|+.|.+...+..|+..++|....|+.- +.++.. .........+||+||+..+++.+|.+++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~---------------~~~~~~~~~l~V~nLp~~~te~~L~~~F 68 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRP---------------PPDVEGMTSLKVDNLTYRTSPDTLRRVF 68 (135)
T ss_dssp -------------------------------CCSCCS---------------CSSGGGCCCEEEECCCSSCHHHHHHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCCC---------------CCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 478899999999999999998877666431 111111 0112223346999999999999999884
Q ss_pred CCCcccccCC-CCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 251 KSPENLKDNE-TGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 251 ks~~~~k~~~-~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..++.+.... ..+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 69 ~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~ 112 (135)
T 2lea_A 69 EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 112 (135)
T ss_dssp GGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC
T ss_pred HhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 4222111111 122467899999999999999999999888764
No 215
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.14 E-value=2.6e-07 Score=76.16 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=46.6
Q ss_pred ccccCCCcccchhhhcCCCCCCc--ccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPE--NLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~--~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++++|.+++..++ ....... .+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 4 l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~ 68 (90)
T 3p5t_L 4 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR 68 (90)
T ss_dssp CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGS
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCC
Confidence 59999999999999988843222 1111111 23568999999999999999999999999984
No 216
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.13 E-value=1.4e-05 Score=66.98 Aligned_cols=74 Identities=9% Similarity=0.056 Sum_probs=67.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhc-----CceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKVC-----GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~-----G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i 200 (577)
...++|-+-|||..+++..|+.|+..| |.|+.+.++.+- +-|+|+|.+...|.+|.-.|+|..|.|+.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 347899999999999999999999999 999999998874 579999999999999998899999999999
Q ss_pred EEEEc
Q 008117 201 MLKVD 205 (577)
Q Consensus 201 ~V~~a 205 (577)
+|...
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 99643
No 217
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.12 E-value=5.8e-07 Score=75.69 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=47.4
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCC-CCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNE-TGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~-~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++++|.+++..++...... ..+..+|.++|||||+|.+.++|.+|+..|++.
T Consensus 22 lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~ 84 (99)
T 4fxv_A 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL 84 (99)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC
Confidence 59999999999999998843222111111 123678999999999999999999999998864
No 218
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.11 E-value=6.4e-07 Score=82.67 Aligned_cols=119 Identities=18% Similarity=0.079 Sum_probs=50.1
Q ss_pred EEeCCHHHHHHHHHHhCCceeC--CeEEEEEEchhhH-HHHHhhh---hh-hhhccccccccccccccCCCcccchhhhc
Q 008117 175 CEFESAEGVLRALRLLNKFNID--GQELMLKVDQATR-EYLERYV---DK-KTENTKKLKETQDAGAGKEDESVQSVEKN 247 (577)
Q Consensus 175 V~f~~~~~A~~Al~~Lng~~i~--gr~i~V~~a~~~~-~~~~~~~---~~-k~~~~~~~~~~~~~~v~nl~~~~~~~~l~ 247 (577)
.+|.+.++|..|+..|++.... |+.+.+.++.... ..+..+. .. .............+||+||+..+++.+|.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999999987775 6666665532211 0111110 00 01111122334457999999999999999
Q ss_pred CCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 248 EPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 248 e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.++..++.+..... .+..+|.++|||||+|.+.++|..||..|++.
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 137 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA 137 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 88442221111111 22568899999999999999999999998874
No 219
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.07 E-value=5.3e-06 Score=67.21 Aligned_cols=64 Identities=11% Similarity=0.084 Sum_probs=49.3
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCC-CCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNE-TGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~-~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|.+++..++...... ..+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (85)
T 1x4e_A 6 SGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS 70 (85)
T ss_dssp CEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCC
Confidence 3469999999999999999955332211111 123567999999999999999999999988875
No 220
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.07 E-value=1.4e-06 Score=74.83 Aligned_cols=64 Identities=8% Similarity=0.123 Sum_probs=48.8
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++++|.+++..++.+..... .+..+|+++|||||+|.+.++|..|+..||+.
T Consensus 7 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~ 71 (110)
T 3s8s_A 7 KEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT 71 (110)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC
Confidence 34699999999999999998442221111111 23567999999999999999999999999875
No 221
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.94 E-value=1.9e-06 Score=72.54 Aligned_cols=65 Identities=8% Similarity=-0.012 Sum_probs=47.9
Q ss_pred cccccccCCCc------ccchhhhcCCCCCCcccccCC-CCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDE------SVQSVEKNEPTKSPENLKDNE-TGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~------~~~~~~l~e~~ks~~~~k~~~-~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+.+||+|||. .+++.+|.+++..++...... ..+..+|+++|||||+|.+.++|..|+..|++.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~ 77 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK 77 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCc
Confidence 34569999999 999999988833222111111 122567999999999999999999999988864
No 222
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.91 E-value=6.5e-06 Score=70.56 Aligned_cols=60 Identities=12% Similarity=-0.085 Sum_probs=45.0
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
.+||+||+..+++++|.+++..+.+ .......+..|+++|||||+|.+.++|.+|| .+++
T Consensus 18 ~v~V~nLp~~~te~dl~~~F~~~~v-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~ 77 (109)
T 2dnn_A 18 YVSVHGMPFSAMENDVRDFFHGLRV-DAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNR 77 (109)
T ss_dssp EEEEECCCSSCCHHHHHHHTTTSCC-CEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTT
T ss_pred EEEEeCCCCCCCHHHHHHHhccCCe-eEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCC
Confidence 3699999999999999998653322 1111122345999999999999999999999 4543
No 223
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.90 E-value=6.9e-06 Score=68.95 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=49.1
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|.+++..+...... .+..++.++|||||+|.+.++|..||..|++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~--~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 2fc8_A 15 SKTLFVKGLSEDTTEETLKESFDGSVRARIV--TDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 77 (102)
T ss_dssp CSSEEEECCCTTCCHHHHHHTSTTCSEEEEE--ECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCccCHHHHHHHhcCCeEEEEE--ecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 3446999999999999999995522222111 12567899999999999999999999998874
No 224
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=7.7e-06 Score=70.44 Aligned_cols=63 Identities=11% Similarity=0.054 Sum_probs=46.6
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCC---CCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKES---HDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~---g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++++|.+++..++........+..+ |.++|||||+|.+.++|..||..|+++
T Consensus 10 ~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~ 75 (114)
T 2dnl_A 10 KVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEE 75 (114)
T ss_dssp CEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEE
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhc
Confidence 359999999999999998855222111111112333 899999999999999999999988554
No 225
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.89 E-value=2.7e-06 Score=76.27 Aligned_cols=106 Identities=8% Similarity=-0.033 Sum_probs=46.1
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCC
Q 008117 171 GFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPT 250 (577)
Q Consensus 171 g~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ 250 (577)
++||..|..+..+..++..+... .+|...--...... + .........+||+||+..+++++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~~------~-------~~~~~~~~~lfV~nLp~~~te~dL~~~F 67 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDSE------F-------TVQSTTGHCVHMRGLPYKATENDIYNFF 67 (139)
T ss_dssp ---------------------------------------------------------CCCCEECCSCCTTCCHHHHHHHH
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCcc------c-------CCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 67888888887777776654322 23322211100000 0 0011222346999999999999999995
Q ss_pred CCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 251 KSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 251 ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
..+++. ......+.+|+++|||||+|.+.++|.+|| .+++
T Consensus 68 ~~~Gi~-~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g 107 (139)
T 2hgn_A 68 SPLNPV-RVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDR 107 (139)
T ss_dssp CSCCCS-EEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCS
T ss_pred HhcCCe-EEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCC
Confidence 533322 222222345999999999999999999998 4543
No 226
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.85 E-value=1.2e-05 Score=67.53 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=48.7
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|.+++..++....... .+..++.++|||||+|.+.++|..|+..|++.
T Consensus 12 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 2cqb_A 12 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 77 (102)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 344699999999999999988442221111111 23567899999999999999999999998864
No 227
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=1.1e-05 Score=69.17 Aligned_cols=64 Identities=19% Similarity=0.065 Sum_probs=48.7
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccc--------cCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLK--------DNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k--------~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|.+++..++... .... .+..+|.++|||||+|.+.++|..||..|++.
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 16 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 3469999999999999998844222111 1111 23478999999999999999999999998875
No 228
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.84 E-value=4.8e-06 Score=70.37 Aligned_cols=65 Identities=8% Similarity=-0.021 Sum_probs=48.3
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|.+++..++.+.......+.+|.++|||||+|.+.++|..|+..|++.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 79 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS 79 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCC
Confidence 34469999999999999998844222111111111346899999999999999999999988875
No 229
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=7.6e-06 Score=67.84 Aligned_cols=63 Identities=8% Similarity=0.100 Sum_probs=47.6
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccC-CC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDN-ET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~-~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++.+|..++..++..... .. .+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 71 (96)
T 1x5t_A 7 GIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ 71 (96)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCC
Confidence 46999999999999999884322211111 11 22478999999999999999999999988764
No 230
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.84 E-value=9.7e-06 Score=68.97 Aligned_cols=62 Identities=11% Similarity=-0.168 Sum_probs=46.3
Q ss_pred ccccccCCCcccchhhhcCCCCCCcc---cccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPEN---LKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~---~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
..+||+||+..+++.+|.+++..++. ........+..|.++|||||+|.+.++|..||. +++
T Consensus 12 ~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~ 76 (107)
T 2lmi_A 12 FLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHR 76 (107)
T ss_dssp CEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCc
Confidence 34699999999999999998653222 222222223349999999999999999999988 554
No 231
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.84 E-value=7e-06 Score=68.23 Aligned_cols=63 Identities=6% Similarity=0.005 Sum_probs=47.3
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++.+|.+++..++....... .+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 4 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 67 (96)
T 2x1f_A 4 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY 67 (96)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 3599999999999999888432221111111 22467899999999999999999999998874
No 232
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=4e-06 Score=71.09 Aligned_cols=60 Identities=5% Similarity=-0.122 Sum_probs=43.2
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLT 291 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~ 291 (577)
.+||+||+..+++++|.+++..++.+.......+..|.++|||||+|.+.++|..|+. ++
T Consensus 13 ~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~ 72 (103)
T 1s79_A 13 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TP 72 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SS
T ss_pred EEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cC
Confidence 3699999999999999988432221111111112338999999999999999999987 44
No 233
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=1e-05 Score=68.16 Aligned_cols=65 Identities=9% Similarity=0.127 Sum_probs=49.5
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|.+++..++.+..... .+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 80 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF 80 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCC
Confidence 344699999999999999999553221111111 22467899999999999999999999998874
No 234
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.83 E-value=6e-06 Score=71.45 Aligned_cols=63 Identities=8% Similarity=0.025 Sum_probs=47.1
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++++|.+++..++.+.......+.+|.++|||||+|.+.++|..|+..|++.
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 71 (116)
T 2fy1_A 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGK 71 (116)
T ss_dssp EEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 359999999999999998843222111111112338999999999999999999999988764
No 235
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.83 E-value=9.1e-06 Score=68.39 Aligned_cols=62 Identities=8% Similarity=0.097 Sum_probs=48.0
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++.+|.+++..++.+.......+ +|.++|||||+|.+.++|..|+..|++.
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (103)
T 2d9p_A 17 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGR 78 (103)
T ss_dssp CEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCC
Confidence 3699999999999999998553332221112113 7899999999999999999999998874
No 236
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.83 E-value=3.5e-06 Score=67.75 Aligned_cols=61 Identities=3% Similarity=-0.081 Sum_probs=44.3
Q ss_pred ccccCCCccc------chhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESV------QSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~------~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+ ++.+|.+++..++......-. ..+|.++|||||+|.+.++|..|+..|++.
T Consensus 4 l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 4 IVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp EEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCc
Confidence 5999999988 568887773322211111111 467899999999999999999999887764
No 237
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.82 E-value=1e-05 Score=67.87 Aligned_cols=61 Identities=18% Similarity=0.070 Sum_probs=47.4
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCC-CC-CCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETG-NK-ESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~-~~-~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++++|.+++..++ .....-. +. .+|+++|||||+|.+.++|..|+ .+++.
T Consensus 21 ~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~ 83 (100)
T 2j76_E 21 TAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 83 (100)
T ss_dssp EEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC
Confidence 359999999999999999866444 2222221 22 58999999999999999999999 77764
No 238
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.82 E-value=9.1e-06 Score=67.81 Aligned_cols=64 Identities=9% Similarity=-0.033 Sum_probs=47.9
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|.+++..++....... .+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (99)
T 1whw_A 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ 73 (99)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCC
Confidence 34699999999999999988432221111111 22458899999999999999999999998874
No 239
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=1.2e-05 Score=66.40 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=47.6
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCC-CCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNE-TGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~-~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++.+|.+++..++...... ..+..++.++|||||+|.+.++|..|+..|++.
T Consensus 7 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (95)
T 2dnz_A 7 GLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 70 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC
Confidence 359999999999999998844222111111 123567899999999999999999999998874
No 240
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.81 E-value=8.1e-06 Score=69.06 Aligned_cols=60 Identities=12% Similarity=-0.097 Sum_probs=46.2
Q ss_pred ccccccCCCcccchhhhcCCCCCCccccc-CCCCCCCCCCCCceEEEEeCCHHHHHHHHHH
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKD-NETGNKESHDPTNFGVVTEEDRKADQEALEK 289 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~-~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~ 289 (577)
..+||+||+..+++.+|.+++..++.... .....+.+|+++|||||+|.+.++|..||..
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 16 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 76 (104)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 34699999999999999999663332221 1122246899999999999999999999886
No 241
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=97.81 E-value=6.8e-06 Score=72.65 Aligned_cols=62 Identities=6% Similarity=-0.022 Sum_probs=47.9
Q ss_pred cccccccCCCcccchhhhcCCCCCCcc-----cccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPEN-----LKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~-----~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+.+||+||+..+++++|.+++..++. ++.. .+..+|.++|||||+|.+. +|.+|+..|++.
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~--~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVI--KDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECC--BCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEE--EcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 344699999999999999988442211 1111 2256899999999999999 999999999984
No 242
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=7e-06 Score=68.70 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=48.2
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|.+++..++.........+.+|.++|||||+|.+.++|..|+..|++.
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 81 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGM 81 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCC
Confidence 33469999999999999998844222111111111337899999999999999999999998863
No 243
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.80 E-value=1e-05 Score=66.91 Aligned_cols=63 Identities=16% Similarity=-0.040 Sum_probs=48.1
Q ss_pred cccccCCCcccchhhhcCCCCCCcccc-cCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLK-DNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k-~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++.+|.+++..++... .....+..+|.++|||||+|.+.++|.+|+..|++.
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (95)
T 2ek1_A 17 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (95)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 369999999999999998855222111 111122567899999999999999999999988764
No 244
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.80 E-value=7.9e-06 Score=68.31 Aligned_cols=65 Identities=12% Similarity=0.030 Sum_probs=48.7
Q ss_pred cccccccCCCcccchhhhcCCCCCCccccc--------CCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKD--------NET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~--------~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++++|.+++..++.... ... .+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 334699999999999999988442221111 111 22467999999999999999999999988874
No 245
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.80 E-value=1.1e-05 Score=67.27 Aligned_cols=64 Identities=16% Similarity=-0.030 Sum_probs=48.8
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccC-CCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDN-ETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~-~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|.+++..++..... ...+..+|.++|||||+|.+.++|.+|+..|++.
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (98)
T 2cqp_A 16 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (98)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 336999999999999999885522221111 1123578899999999999999999999998864
No 246
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.80 E-value=2.9e-06 Score=73.33 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=44.4
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++++|.+++..++.+...... ...+.++|||||+|.+.++|..||..|++.
T Consensus 8 lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~-~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~ 68 (115)
T 4f25_A 8 IFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDENGSKGYGFVHFETQEAAERAIEKMNGM 68 (115)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-EETTEEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred EEECCCCCCCCHHHHHHHHhccCCEEEEEEe-ecCCCCCceEEEEECCHHHHHHHHHHcCCC
Confidence 4999999999999999984422211111110 112447999999999999999999998875
No 247
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.79 E-value=1.6e-05 Score=66.56 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=49.1
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|.+++..++.+.. ..+.+|.++|||||+|.+.++|..|+..|++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~---~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 76 (101)
T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFEKATFIKV---PQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 76 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHHCSSCSEEEC---CBCSSSCBCSEEEEECSSHHHHHHHHHHTSSE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCEEEE---EECCCCCEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344699999999999999998653332221 11367899999999999999999999988864
No 248
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.79 E-value=1e-05 Score=69.67 Aligned_cols=60 Identities=5% Similarity=-0.134 Sum_probs=45.9
Q ss_pred ccccccCCCcccchhhhcCCCCCCccc-ccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHH
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENL-KDNETGNKESHDPTNFGVVTEEDRKADQEALEK 289 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~-k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~ 289 (577)
..+||+||+..+++.+|.+++..++.. .......+.+|.++|||||+|.+.++|..||..
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 16 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp CEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG
T ss_pred cEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 346999999999999999986533322 222222234899999999999999999999876
No 249
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.78 E-value=1.6e-05 Score=70.17 Aligned_cols=66 Identities=17% Similarity=0.062 Sum_probs=49.5
Q ss_pred ccccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 228 ETQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 228 ~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
....+||+||+..+++.+|.+++..++.+..... .+..+|.++|||||+|.+.++|..||..|++.
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~ 111 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 111 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 3445799999999999999988442221111111 23567899999999999999999999998874
No 250
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=1.8e-05 Score=65.31 Aligned_cols=65 Identities=6% Similarity=0.005 Sum_probs=48.8
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCC-CCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNE-TGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~-~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|.+++..++...... ..+..++.++|||||+|.+.++|..|+..|++.
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 81 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNK 81 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCC
Confidence 33469999999999999998855222111111 123567899999999999999999999988763
No 251
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.76 E-value=1.6e-05 Score=67.27 Aligned_cols=62 Identities=10% Similarity=-0.029 Sum_probs=48.1
Q ss_pred ccccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~k---s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|.+++. .+...... .+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 14 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~--~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (106)
T 2dgp_A 14 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL--KDRFTGMHKGCAFLTYCERESALKAQSALHEQ 78 (106)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHHHSCCCEEECC--CCSSSCSCCSEEEEEESSHHHHHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE--ecCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 3469999999999999998844 22211111 22567999999999999999999999999874
No 252
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.76 E-value=6.5e-06 Score=72.42 Aligned_cols=62 Identities=11% Similarity=-0.125 Sum_probs=46.6
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccc-cCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLK-DNETGNKESHDPTNFGVVTEEDRKADQEALEKLT 291 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k-~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~ 291 (577)
..+||+||+..+++++|.+++..+.+.. ......+..|+++|||||+|.+.++|.+||...+
T Consensus 43 ~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~ 105 (126)
T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 105 (126)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCC
Confidence 3469999999999999999966333321 1222223449999999999999999999988543
No 253
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.75 E-value=1.2e-05 Score=69.03 Aligned_cols=64 Identities=9% Similarity=0.013 Sum_probs=48.6
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhhH
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~i 294 (577)
.+||+||+..+++.+|..++..++.........+.+|.++|||||+|.+.++|..|+..|++..
T Consensus 27 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 90 (114)
T 1x5o_A 27 NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKF 90 (114)
T ss_dssp EEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 3699999999999999998553322221111113378999999999999999999999888753
No 254
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.75 E-value=9.3e-06 Score=65.27 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=46.8
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++.+|.+++...+....... .+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 4 l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~ 66 (83)
T 3md1_A 4 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ 66 (83)
T ss_dssp EEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC
Confidence 599999999999999988442221111111 12467899999999999999999999988865
No 255
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.75 E-value=4.3e-06 Score=76.48 Aligned_cols=62 Identities=11% Similarity=0.051 Sum_probs=47.4
Q ss_pred ccccCCCcccchhhhcCCCCCCc--ccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPE--NLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~--~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++++|.+++..++ .+..... .+..+|.++|||||+|.+.++|..||..|++.
T Consensus 58 lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~ 122 (156)
T 3n9u_C 58 VYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGK 122 (156)
T ss_dssp EEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 49999999999999998844222 1111111 23578999999999999999999999998764
No 256
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.75 E-value=6.7e-06 Score=69.47 Aligned_cols=61 Identities=5% Similarity=-0.184 Sum_probs=45.9
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
..+||+||+..+++++|.+++..++.. ......+.+|+++|||||+|.+.++|.+||. +++
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~ 76 (102)
T 1wez_A 16 HCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDK 76 (102)
T ss_dssp CEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCC
Confidence 346999999999999999996633322 1122123489999999999999999999985 443
No 257
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.74 E-value=6.1e-06 Score=72.18 Aligned_cols=62 Identities=11% Similarity=-0.116 Sum_probs=47.2
Q ss_pred ccccccCCCcccchhhhcCCCCCCccccc-CCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKD-NETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~-~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
..+||+||+..+++.+|.+++..++.+.. .......+|.++|||||+|.+.++|..||. +++
T Consensus 26 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g 88 (124)
T 1wel_A 26 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHK 88 (124)
T ss_dssp CEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCC
Confidence 34699999999999999998653332211 111235689999999999999999999998 655
No 258
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=8.8e-06 Score=69.80 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=48.2
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|.+++..++.+.......+.+|.++|||||+|.+.++|..|+..|++.
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ 79 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 34469999999999999998844222111111111345889999999999999999999998874
No 259
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.74 E-value=8.3e-06 Score=68.72 Aligned_cols=64 Identities=14% Similarity=0.012 Sum_probs=48.1
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|.+++..+++....-..+..+|.++|||||+|.+.++|..|+ .|++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 78 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGA 78 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCC
Confidence 33469999999999999999855333221111123567899999999999999999999 77763
No 260
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.73 E-value=8.1e-06 Score=72.85 Aligned_cols=62 Identities=6% Similarity=-0.208 Sum_probs=46.5
Q ss_pred ccccccCCCcccchhhhcCCCCCCcc---cccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPEN---LKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~---~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
..+||+||+..+++++|.+++..++. ........+..|+++|||||+|.+.++|.+||. +++
T Consensus 45 ~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g 109 (136)
T 2hgl_A 45 FVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDR 109 (136)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCC
Confidence 33699999999999999998653332 222222223349999999999999999999998 665
No 261
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.73 E-value=1.6e-05 Score=66.42 Aligned_cols=63 Identities=19% Similarity=0.195 Sum_probs=46.4
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCC-CCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNE-TGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~-~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|.+++..++.+.... ..+..+|.++|||||+|.+.++|..|+. +++.
T Consensus 11 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~ 74 (99)
T 2dgs_A 11 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFH 74 (99)
T ss_dssp CEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCC
Confidence 3469999999999999998844222111111 1225678999999999999999999998 6653
No 262
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.73 E-value=8.7e-06 Score=70.66 Aligned_cols=62 Identities=8% Similarity=-0.172 Sum_probs=46.4
Q ss_pred ccccccCCCcccchhhhcCCCCCCcc---cccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPEN---LKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~---~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
..+||+||+..+++++|.+++..++. +.......+..|+++|||||+|.+.++|.+||. +++
T Consensus 18 ~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g 82 (118)
T 2db1_A 18 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDR 82 (118)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCC
Confidence 33699999999999999998653322 222222223348999999999999999999998 654
No 263
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.73 E-value=1.6e-05 Score=67.12 Aligned_cols=62 Identities=18% Similarity=0.062 Sum_probs=47.4
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCC-CCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKES-HDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~-g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|.+++..++ +..... .+..+ |.++|||||+|.+.++|.+|| .|++.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 79 (104)
T 1wi8_A 16 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 79 (104)
T ss_dssp EEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCC
Confidence 3469999999999999999866433 222222 22444 899999999999999999999 77764
No 264
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.73 E-value=1.6e-05 Score=67.34 Aligned_cols=64 Identities=16% Similarity=0.086 Sum_probs=47.3
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCC-CC-CCCCCCCceEEEEeCCHHHHHHHHHHH-hh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GN-KESHDPTNFGVVTEEDRKADQEALEKL-TC 292 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~-~~~g~~kgfgfV~f~~~e~a~~Al~~l-~~ 292 (577)
...+||+||+..+++.+|.+++..++.+..... .+ ..+|.++|||||+|.+.++|..|+..| ++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 81 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHS 81 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccC
Confidence 344699999999999999988442221111111 12 347899999999999999999999998 54
No 265
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.72 E-value=7e-06 Score=69.58 Aligned_cols=65 Identities=14% Similarity=0.031 Sum_probs=48.2
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|.+++..++.+.......+.+|.++|||||+|.+.++|..|+..|++.
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 93 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV 93 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 34469999999999999988844222111111111338899999999999999999999998874
No 266
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.71 E-value=1e-05 Score=65.38 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=47.6
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|.+++..++....... .+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 8 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 72 (85)
T 3mdf_A 8 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 72 (85)
T ss_dssp SEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC
Confidence 34699999999999999988442221111111 12467889999999999999999999988864
No 267
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.71 E-value=1.3e-05 Score=68.40 Aligned_cols=65 Identities=17% Similarity=0.028 Sum_probs=48.6
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|..++..++....... .+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 91 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA 91 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC
Confidence 344699999999999999988442221111111 22467899999999999999999999998874
No 268
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.71 E-value=1.1e-05 Score=68.04 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=47.8
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|.+++..++.+..... .+..++.++|||||+|.+.++|..|+..|++.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (105)
T 1x5u_A 16 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMI 80 (105)
T ss_dssp TEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 34699999999999999888442221111111 22457899999999999999999999988763
No 269
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.71 E-value=1.5e-05 Score=67.00 Aligned_cols=65 Identities=12% Similarity=0.075 Sum_probs=48.6
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCC-CCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNE-TGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~-~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|.+++..++.+.... ..+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (103)
T 2dnm_A 13 MITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGA 78 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCC
Confidence 34469999999999999998844222111111 123567899999999999999999999998874
No 270
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.71 E-value=7e-06 Score=69.60 Aligned_cols=64 Identities=3% Similarity=-0.091 Sum_probs=46.6
Q ss_pred cccccccCCCccc------chhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESV------QSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~------~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+.+||+||+..+ ++.+|..++..++........ ..+|.++|||||+|.+.++|..|+..|++.
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~ 84 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGY 84 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCc
Confidence 3446999999998 667788774422211111111 467899999999999999999999988764
No 271
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.71 E-value=1.5e-05 Score=68.00 Aligned_cols=63 Identities=10% Similarity=-0.011 Sum_probs=47.3
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLT 291 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~ 291 (577)
...+||+||+..+++.+|.+++..++.+..... .+..+|.++|||||+|.+.++|..|+..++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 344699999999999999988432221111111 225678999999999999999999999987
No 272
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.69 E-value=7.6e-06 Score=68.97 Aligned_cols=64 Identities=13% Similarity=0.020 Sum_probs=47.7
Q ss_pred ccccccCCCcccchhhhcCCCCC-CcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKS-PENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks-~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|.+++.. ++.........+.+|.++|||||+|.+.++|..|+..|++.
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 74 (104)
T 2dhg_A 10 YSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGA 74 (104)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCC
Confidence 34699999999999999887432 33221111111338899999999999999999999998874
No 273
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.69 E-value=9.8e-06 Score=65.77 Aligned_cols=62 Identities=8% Similarity=0.131 Sum_probs=46.7
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++.+|.+++..++....... .+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 9 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 71 (87)
T 3bs9_A 9 VFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 71 (87)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 599999999999999988442221111111 12467899999999999999999999998863
No 274
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.69 E-value=1.2e-05 Score=69.25 Aligned_cols=64 Identities=11% Similarity=0.075 Sum_probs=47.8
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++++|.+++..++.+..... .+..++.++|||||+|.+.++|..|+..|++.
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 90 (115)
T 2cpz_A 26 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGF 90 (115)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCC
Confidence 34699999999999999988442211111111 12457899999999999999999999998874
No 275
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.69 E-value=4.8e-06 Score=69.90 Aligned_cols=62 Identities=19% Similarity=0.132 Sum_probs=45.9
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++.+|.+++..++........+..+|.++|||||+|.+.++|..|+. |++.
T Consensus 19 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~ 80 (101)
T 1fj7_A 19 NLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL 80 (101)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCc
Confidence 3699999999999999988441111100111225678999999999999999999998 8764
No 276
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.69 E-value=2.1e-05 Score=65.89 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=47.8
Q ss_pred ccccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~k---s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|.+++. .+...... .+..++.++|||||+|.+.++|..|+..|++.
T Consensus 13 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~--~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 1x5s_A 13 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVV--KDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 77 (102)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHHHSCCCEEEEC--CCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEE--eCCCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 3469999999999999988844 22211111 22567889999999999999999999998875
No 277
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.68 E-value=1.3e-05 Score=66.29 Aligned_cols=66 Identities=17% Similarity=0.065 Sum_probs=48.4
Q ss_pred ccccccccCCCcccchhhhcCCCCCCcccccCC-CCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 228 ETQDAGAGKEDESVQSVEKNEPTKSPENLKDNE-TGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 228 ~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~-~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
....+||+||+..+++.+|.+++..++...... ..+..++.++|||||+|.+.++|..|+..|++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 80 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 80 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 344569999999999999988843222111111 122566889999999999999999999998763
No 278
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.67 E-value=3.5e-05 Score=66.20 Aligned_cols=60 Identities=7% Similarity=-0.063 Sum_probs=45.2
Q ss_pred ccccccccCCCcc-cchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 228 ETQDAGAGKEDES-VQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 228 ~~~~~~v~nl~~~-~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
....+||+||+.. +++.+|.+++..++.+.... ..+++|||||+|.+.++|..|+..|++
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~-----i~~~kg~aFVef~~~~~A~~Ai~~l~~ 84 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYI-----LMRMKSQAFIEMETREDAMAMVDHCLK 84 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEE-----EETTTTEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEE-----EecCCCEEEEEECCHHHHHHHHHHhcc
Confidence 3445799999998 99999999955333222111 124689999999999999999998865
No 279
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.67 E-value=1.9e-05 Score=68.93 Aligned_cols=64 Identities=16% Similarity=0.057 Sum_probs=47.9
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|.+++..++.+.......+.+|.++|||||+|.+.++|..|+..|++.
T Consensus 36 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 99 (124)
T 2kt5_A 36 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV 99 (124)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCC
Confidence 3469999999999999988844222111111111338899999999999999999999998875
No 280
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.66 E-value=2.2e-05 Score=68.55 Aligned_cols=65 Identities=14% Similarity=0.038 Sum_probs=48.5
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|.+++..++.+..... .+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 87 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ 87 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 344699999999999999988432221111111 22458899999999999999999999988874
No 281
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.65 E-value=1.3e-05 Score=63.35 Aligned_cols=60 Identities=15% Similarity=0.045 Sum_probs=44.9
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLT 291 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~ 291 (577)
+||+||+..+++.+|..++...+......- .+..+|.++|||||.|.+.++|..|+..++
T Consensus 3 l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp EEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 499999999999999888432221111111 224678999999999999999999998776
No 282
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.65 E-value=2.9e-05 Score=66.45 Aligned_cols=64 Identities=13% Similarity=-0.029 Sum_probs=46.0
Q ss_pred ccccccCCCcccchhhhc---CCCCCCc---ccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKN---EPTKSPE---NLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~---e~~ks~~---~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+.+||+||+..+++++|. +++..++ ......+ ....++.++|||||+|.+.++|..|+..|++.
T Consensus 16 ~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~ 86 (111)
T 2cpi_A 16 NLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV 86 (111)
T ss_dssp SCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC
Confidence 346999999999999998 7744222 1111111 11224567799999999999999999998875
No 283
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.65 E-value=1.9e-05 Score=67.24 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=46.7
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++++|.+++..++.+..... ..++.++|||||+|.+.++|..|+..|++.
T Consensus 22 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 84 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL--KNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 84 (109)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE--CCSSSSSCCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE--EECCCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 344699999999999999988442221111111 234568999999999999999999998874
No 284
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.65 E-value=2.2e-05 Score=61.80 Aligned_cols=57 Identities=16% Similarity=0.090 Sum_probs=41.9
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHH
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALE 288 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~ 288 (577)
+||+||+..+++++|.+++...+....... .+..+|.++|||||+|.+.++|..|+.
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 489999999999999888332221111111 224578999999999999999999876
No 285
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.64 E-value=1.4e-05 Score=68.53 Aligned_cols=62 Identities=10% Similarity=0.048 Sum_probs=46.9
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++.+|.+++..++.+..... .+..+|.++|||||+|.+.++|..|| .|++.
T Consensus 27 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 89 (114)
T 2cq4_A 27 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQ 89 (114)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCC
Confidence 4699999999999999988442221111111 23566899999999999999999999 88764
No 286
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.64 E-value=1.2e-05 Score=67.93 Aligned_cols=64 Identities=14% Similarity=0.045 Sum_probs=47.8
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|.+++..++....... .+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 24 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 88 (106)
T 1p27_B 24 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ 88 (106)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCC
Confidence 34699999999999999988442221111111 22567899999999999999999999998874
No 287
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.64 E-value=1.6e-05 Score=68.69 Aligned_cols=62 Identities=11% Similarity=0.076 Sum_probs=47.5
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++++|.+++..++....... .+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 43 l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 105 (118)
T 2khc_A 43 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGF 105 (118)
T ss_dssp EEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCC
Confidence 489999999999999988553332111111 23567899999999999999999999988764
No 288
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.63 E-value=9.3e-06 Score=66.33 Aligned_cols=57 Identities=7% Similarity=-0.078 Sum_probs=43.2
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++.+|.+++..++...... ...++|||||+|.+.++|.+|+..||+.
T Consensus 10 L~VgNL~~~~te~~L~~lF~q~G~V~~~~-----l~~~kGfaFVey~~~~eA~~Ai~~Ln~~ 66 (89)
T 2wbr_A 10 LLLKNLTAQIDGPTLRTLCMQHGPLVSFH-----PYLNQGIALCKYTTREEANKAQMALNNC 66 (89)
T ss_dssp EEEECCCTTCCCHHHHHHHHHHSCEEEEE-----EETTTTEEEEEESSHHHHHHHHHHHTTE
T ss_pred EEEeCCCccCCHHHHHHHHHhhCCEEEEE-----EcCCCcEEEEEECCHHHHHHHHHHhcCC
Confidence 58999999999999999944111111111 1237999999999999999999999873
No 289
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.62 E-value=1e-05 Score=67.52 Aligned_cols=62 Identities=13% Similarity=0.076 Sum_probs=47.6
Q ss_pred ccccccCCCcccchhhhcCCCC---CCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTK---SPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~k---s~~-~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|.+++. .+. ..+.. .+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~--~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (99)
T 2div_A 10 ASLWMGDLEPYMDENFISRAFATMGETVMSVKII--RNRLTGIPAGYCFVEFADLATAEKCLHKINGK 75 (99)
T ss_dssp SEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEE--ECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEe--ecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC
Confidence 3469999999999999988843 222 11111 22568899999999999999999999988864
No 290
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.62 E-value=9.8e-06 Score=67.02 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=46.8
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|.+++..++.........+.+|.++|||||+|.+.++|..|+..|++.
T Consensus 17 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (95)
T 2ywk_A 17 RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGI 80 (95)
T ss_dssp GEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 3469999999999999998844222111111111334889999999999999999999988764
No 291
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.62 E-value=1.2e-05 Score=65.98 Aligned_cols=61 Identities=10% Similarity=-0.033 Sum_probs=46.1
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++.+|.+++..+.+. ......+.+|.++|||||+|.+.++|..|+. +++.
T Consensus 12 ~l~v~nLp~~~t~~~l~~~F~~~~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~ 72 (91)
T 2dgw_A 12 TVKLRGAPFNVTEKNVMEFLAPLKPV-AIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNRE 72 (91)
T ss_dssp EEEEECCCSSCCHHHHHHHHTTSCCS-EEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSE
T ss_pred EEEEECCCCCCCHHHHHHHHhhCCce-EEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCc
Confidence 36999999999999999884422211 1111113678999999999999999999999 7764
No 292
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.62 E-value=1.1e-05 Score=66.92 Aligned_cols=60 Identities=8% Similarity=0.024 Sum_probs=47.9
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|..++..++.+... ..+|.++|||||+|.+.++|..|+..|++.
T Consensus 17 ~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 76 (96)
T 1fjc_A 17 RTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGA 76 (96)
T ss_dssp GEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 346999999999999999885533322211 457889999999999999999999988863
No 293
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.61 E-value=2.7e-05 Score=65.42 Aligned_cols=63 Identities=19% Similarity=0.110 Sum_probs=45.1
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|.+++..++.+.......+. +.++|||||+|.+.++|..|+..|++.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cq3_A 16 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-RGSKGFGFVTFENSADADRAREKLHGT 78 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT-TTTCCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-CCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 346999999999999999884422211111111122 238999999999999999999998874
No 294
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.60 E-value=1.6e-05 Score=65.25 Aligned_cols=62 Identities=11% Similarity=-0.002 Sum_probs=46.3
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++.+|..++..++........ ..+|.++|||||+|.+.++|..|+..|++.
T Consensus 10 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~-~~~g~~~g~afV~f~~~~~a~~a~~~l~g~ 71 (92)
T 2dgv_A 10 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIK-MENGKSKGCGVVKFESPEVAERACRMMNGM 71 (92)
T ss_dssp EEEECSCCTTCCHHHHHHHHHTTSCEEEEEEE-ESSSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-ccCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 36999999999999998884322211111111 247889999999999999999999998874
No 295
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=97.60 E-value=1.9e-05 Score=67.36 Aligned_cols=63 Identities=14% Similarity=0.026 Sum_probs=46.8
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
..+||+||+..+++.+|..++..++....... .+..+|.++|||||+|.+.++|..|+..++.
T Consensus 26 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~ 89 (109)
T 2rs2_A 26 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRH 89 (109)
T ss_dssp CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCC
Confidence 34699999999999999988442221111111 2356799999999999999999999987653
No 296
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.60 E-value=1.5e-05 Score=68.55 Aligned_cols=64 Identities=8% Similarity=0.125 Sum_probs=48.0
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|.+++..++.+..... .+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (115)
T 2dgo_A 16 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 80 (115)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 34699999999999999988442221111111 12457899999999999999999999998874
No 297
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.59 E-value=1.8e-05 Score=67.45 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=48.4
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|.+++..++....... .+..+|.++|||||.|.+.++|..|+..+++.
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 91 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 91 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 344699999999999999988442221111111 12467889999999999999999999988874
No 298
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.59 E-value=4.8e-05 Score=64.12 Aligned_cols=61 Identities=8% Similarity=-0.068 Sum_probs=44.6
Q ss_pred cccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 227 KETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 227 ~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
.+...+||+||+..+++++|.+++..++....... ...+|||||+|.+.++|..|+..++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i-----~~~kg~aFVef~~~~~A~~Ai~~l~~ 73 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILM-----LKGKNQAFLELATEEAAITMVNYYSA 73 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-----ECCCCEEEEEECCHHHHHHHHHHhcc
Confidence 34455799999999999999998553332221111 11289999999999999999987753
No 299
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.58 E-value=1.8e-05 Score=68.21 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=49.6
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCC-CCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhhHHH
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNE-TGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEE 296 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~-~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~i~e 296 (577)
..+||+||+..+++++|.+++..++.+.... ..+..++.++|||||+|.+.++|..||..+++.+..
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g 85 (116)
T 2cqd_A 18 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDG 85 (116)
T ss_dssp SEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCC
Confidence 3469999999999999998844222111111 123567999999999999999999999998875443
No 300
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.58 E-value=4.8e-05 Score=64.26 Aligned_cols=60 Identities=7% Similarity=-0.054 Sum_probs=44.6
Q ss_pred ccccccccCCCc-ccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 228 ETQDAGAGKEDE-SVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 228 ~~~~~~v~nl~~-~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
+...+||+||+. .+++.+|.+++..++.+..... -..+|||||+|++.++|..|+..|++
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i-----~~~kg~aFVef~~~~~A~~Ai~~l~~ 74 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI-----LNKINEAFIEMATTEDAQAAVDYYTT 74 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE-----CSSSSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEE-----EcCCCEEEEEECCHHHHHHHHHHHcC
Confidence 344569999999 9999999999653222211111 12368999999999999999999886
No 301
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.57 E-value=2.5e-05 Score=65.66 Aligned_cols=62 Identities=10% Similarity=-0.092 Sum_probs=45.6
Q ss_pred cccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 227 KETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 227 ~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+..++||+||+..+++.+|.+++...+....... -+.||||||+|++.++|..|+..+++.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i-----~~~kg~AFVef~~~~~A~~Av~~ln~~ 80 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVV-----MPKKRQALVEFEDVLGACNAVNYAADN 80 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEE-----EcCCCEEEEEECCHHHHHHHHHHhcCC
Confidence 34556799999999999999988442221111100 135899999999999999999998763
No 302
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.56 E-value=3.3e-05 Score=68.57 Aligned_cols=65 Identities=14% Similarity=0.082 Sum_probs=48.3
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCC-CCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNE-TGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~-~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|.+++...+...... ..+..+|.++|||||+|.+.++|.+|+..|++.
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 128 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 128 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEE
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 34469999999999999998844221111111 122567899999999999999999999988764
No 303
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.55 E-value=3.6e-05 Score=65.61 Aligned_cols=64 Identities=17% Similarity=0.091 Sum_probs=45.5
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++++|.+++..++.........+ .+.++|||||+|.+.++|..|+..|++.
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~~kg~afV~f~~~~~A~~Ai~~l~g~ 92 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ERGSKGFGFVTFENSADADRAREKLHGT 92 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCB-TTBCTTEEEEECCCSHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEEC-CCCCceEEEEEECCHHHHHHHHHHcCCC
Confidence 334699999999999999888442221111111111 2348999999999999999999988864
No 304
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.55 E-value=3.4e-05 Score=67.01 Aligned_cols=61 Identities=10% Similarity=-0.066 Sum_probs=44.1
Q ss_pred cccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 227 KETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 227 ~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
.....+||+||+..+++.+|.+++..++.+..... -..+|||||+|++.++|..|+..+++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i-----~~~kG~AFVeF~~~e~A~~Ai~~l~~ 89 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM-----LKGKNQAFIEMNTEEAANTMVNYYTS 89 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEE-----EGGGTEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-----eCCCCEEEEEECCHHHHHHHHHHhcc
Confidence 34455799999999999999988442221111111 01279999999999999999998875
No 305
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.55 E-value=8.3e-06 Score=79.44 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=48.1
Q ss_pred ccccCCCcccchhhhcCCCCCCc--ccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPE--NLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~--~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++.+|.+++..++ .+..+.. .+..+|+++|||||+|.+.++|.+||..|++.
T Consensus 71 lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~ 135 (229)
T 3q2s_C 71 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR 135 (229)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTS
T ss_pred EEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 59999999999999998844333 1221111 23578999999999999999999999988754
No 306
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.54 E-value=2e-05 Score=66.88 Aligned_cols=58 Identities=10% Similarity=-0.066 Sum_probs=41.7
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
..+||+||+..+++++|.+++..++....... -..||||||+|++.++|..|+..+++
T Consensus 17 ~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i-----~~~kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 17 RVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM-----LKGKNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp CEEEECSCCTTSCHHHHHHHHHHHCCEEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-----EcCCCEEEEEECCHHHHHHHHHHhcc
Confidence 34699999999999999988441111111100 01279999999999999999998763
No 307
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.53 E-value=1.9e-05 Score=67.72 Aligned_cols=65 Identities=8% Similarity=-0.113 Sum_probs=47.8
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccc-cCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLK-DNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k-~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++++|.+++..++... ........+|.++|||||+|.+.++|..|+..|++.
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 90 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGY 90 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 34579999999999999998855211110 000111337899999999999999999999998874
No 308
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.53 E-value=4.2e-05 Score=65.65 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=44.2
Q ss_pred ccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~-~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++.+|.+++..++ .+.... -..+.++|||||+|.+.++|.+|+..|++.
T Consensus 31 l~VgnLp~~~te~dL~~~F~~~G~~v~~v~---i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~ 90 (111)
T 2jvr_A 31 ITMKNLPEGCSWQDLKDLARENSLETTFSS---VNTRDFDGTGALEFPSEEILVEALERLNNI 90 (111)
T ss_dssp EEEECSSCCCCHHHHHHHHHHHTCCCSEEE---CSSCSSSCCEEEEESSHHHHHHHHHHTTTE
T ss_pred EEEECCCCCCCHHHHHHHHHHhCCeeEEEE---EEcCCCCCEEEEEECCHHHHHHHHHHcCCC
Confidence 59999999999999998844222 111111 112358999999999999999999998874
No 309
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.53 E-value=2e-05 Score=69.46 Aligned_cols=63 Identities=13% Similarity=0.049 Sum_probs=44.8
Q ss_pred cccccccCCCcccchhhhcC----CCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNE----PTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e----~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++++|+. ++..++.+..... ..+|.++|||||+|.+.++|..|+..|++.
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i--~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~ 95 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVV--DLSDDNSGKAYIVFATQESAQAFVEAFQGY 95 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE--CCCCSSCCCEEEEESSHHHHHHHHHHSTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEe--ccCCCcCCEEEEEECCHHHHHHHHHHHCCC
Confidence 34479999999999988652 3221111111111 346889999999999999999999998874
No 310
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.52 E-value=1.3e-05 Score=67.40 Aligned_cols=63 Identities=11% Similarity=0.132 Sum_probs=46.6
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++.+|.+++..++....... .+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 10 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (104)
T 1p1t_A 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 73 (104)
T ss_dssp CEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB
T ss_pred EEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 3599999999999999888332221111111 12457889999999999999999999988764
No 311
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.52 E-value=1.4e-05 Score=70.06 Aligned_cols=59 Identities=14% Similarity=-0.161 Sum_probs=44.4
Q ss_pred cccccCCCcccchhhhcCCCCCCc-c---cccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHH
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPE-N---LKDNETGNKESHDPTNFGVVTEEDRKADQEALEK 289 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~-~---~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~ 289 (577)
.+||+||+..+++++|.+++..++ + ........+.+|+++|||||+|.+.++|.+||..
T Consensus 25 ~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 25 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp EEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh
Confidence 369999999999999999844221 1 1112222235799999999999999999999975
No 312
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.66 E-value=1.3e-05 Score=69.10 Aligned_cols=63 Identities=13% Similarity=0.024 Sum_probs=48.2
Q ss_pred cccccCCCcccchhhhcCCCCCCccccc--------CCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKD--------NET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~--------~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++.+|.+++..++.... ... .+..+|.++|||||+|.+.++|..|+..|++.
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 9 TIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 3699999999999999998552221111 111 22467899999999999999999999988874
No 313
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.51 E-value=2.5e-05 Score=71.01 Aligned_cols=66 Identities=12% Similarity=0.035 Sum_probs=48.7
Q ss_pred ccccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 228 ETQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 228 ~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
....+||+||+..+++.+|.+++..++.+..+.. .+..++.++|||||+|.+.++|..||..|++.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 104 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGT 104 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 3445799999999999999988442211111111 22557889999999999999999999988764
No 314
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.48 E-value=2.1e-05 Score=64.07 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=45.3
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++.+|.+++..++....... .+..+|.++|||||+|.+.++|..|+ .+++.
T Consensus 9 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~ 70 (89)
T 3ucg_A 9 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDES 70 (89)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCC
Confidence 599999999999999888442221111111 12457899999999999999999999 77764
No 315
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.48 E-value=3.9e-05 Score=65.80 Aligned_cols=63 Identities=10% Similarity=0.019 Sum_probs=45.9
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|..++..++....... ..++.++|||||+|.+.++|..|+..|++.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 70 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRV--GNTPETRGTAYVVYEDIFDAKNAVDHLSGF 70 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE--ECSTTTTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE--eeCCCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 344699999999999999888432221111111 123566999999999999999999988874
No 316
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.48 E-value=1.7e-05 Score=65.94 Aligned_cols=62 Identities=15% Similarity=0.016 Sum_probs=45.7
Q ss_pred ccccccCCCcccchhhhcCCCCC------CcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKS------PENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks------~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++++|.+++.. +.+..+.. ...++.++|||||+|.+.++|..|+..|++.
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (98)
T 2cpf_A 6 SGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKN--KAGVLLSMGFGFVEYKKPEQAQKALKQLQGH 73 (98)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEEC--TTCCEEEEEEEEEEESSHHHHHHHHHHSTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCCCcCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 34699999999999999988332 12221100 0114588999999999999999999998874
No 317
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.47 E-value=3.2e-05 Score=63.18 Aligned_cols=59 Identities=25% Similarity=0.224 Sum_probs=45.5
Q ss_pred ccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~k---s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++.+|.+++. .+...... .+..+|.++|||||+|.+.+ |..|+..|++.
T Consensus 4 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~--~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~ 65 (90)
T 2ki2_A 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLI--YDRETKKPKGFGFVEMQEES-VSEAIAKLDNT 65 (90)
T ss_dssp EEEEEECTTSSHHHHTTTHHHHTCCSEEEEC--CCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS
T ss_pred EEECCCCCCCCHHHHHHHHHhcCCEEEEEEE--EcCCCCCcceEEEEEECCHH-HHHHHHHhCCC
Confidence 49999999999999998844 22211111 22567899999999999999 99999988765
No 318
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.46 E-value=1.8e-05 Score=66.55 Aligned_cols=60 Identities=8% Similarity=0.008 Sum_probs=44.5
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHH
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEK 289 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~ 289 (577)
..+||+||+..+++.+|.+++..++.+..... .+..+|.++|||||+|.+.++|..||..
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 16 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 34699999999999999988442221111111 2246799999999999999999999985
No 319
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.46 E-value=6e-05 Score=63.85 Aligned_cols=61 Identities=11% Similarity=-0.082 Sum_probs=44.6
Q ss_pred cccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 227 KETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 227 ~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
.+..++||+||+..+++.+|.+++..++....... ...||||||+|.+.++|..|+..|++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i-----~~~kg~aFVef~~~~~A~~Ai~~l~~ 73 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM-----MPFKRQALVEFENIDSAKECVTFAAD 73 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-----ECCCCEEEEEECCHHHHHHHHHHhcc
Confidence 34556799999999999999988442222111111 11389999999999999999998865
No 320
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.45 E-value=2.5e-05 Score=65.88 Aligned_cols=62 Identities=16% Similarity=0.070 Sum_probs=45.7
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
..+||+||+..+++.+|.+++..++.+..... .+..+|.++|||||+|.+.++|..||.. ++
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~ 79 (105)
T 2dh8_A 17 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RP 79 (105)
T ss_dssp SEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CC
Confidence 34699999999999999988432221111111 1246789999999999999999999987 54
No 321
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.45 E-value=1.7e-05 Score=70.66 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=46.7
Q ss_pred cccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~k---s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++++|.+++. .+..+... .+..+|.++|||||+|.+.++|.+|+..|++.
T Consensus 44 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~--~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 107 (139)
T 1u6f_A 44 NLMVNYIPTTVDEVQLRQLFERYGPIESVKIV--CDRETRQSRGYGFVKFQSGSSAQQAIAGLNGF 107 (139)
T ss_dssp EEEEESCSTTCCHHHHHHHHHHHSCEEEEEEE--EETTTTEEEEEEEEEESSHHHHHHHHHHTTTE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--EcCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 359999999999999988844 22111111 12457889999999999999999999998874
No 322
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.44 E-value=0.0002 Score=59.88 Aligned_cols=75 Identities=12% Similarity=0.026 Sum_probs=63.0
Q ss_pred CCceEEEcCCCCCC-CH----HHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008117 127 PQTKVYVGKIAPTA-DS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (577)
Q Consensus 127 ~~~tlfVgnLp~~~-te----~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~ 201 (577)
-+++|+|.||+..+ .. ..++.+|..|+.+..+..... -.=..|.|.+.++|.+|-..||+..|+|..|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 36789999998754 32 467899999999998877653 23468999999999999999999999999999
Q ss_pred EEEchh
Q 008117 202 LKVDQA 207 (577)
Q Consensus 202 V~~a~~ 207 (577)
|.|++.
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999874
No 323
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.44 E-value=1.9e-05 Score=70.74 Aligned_cols=65 Identities=9% Similarity=-0.045 Sum_probs=48.1
Q ss_pred cccccccCCCcccchhhhcCCCCCCccccc------CCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKD------NETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~------~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|..++..++.+.. .+.....+|.++|||||+|.+.++|..|+..|++.
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 115 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGY 115 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 344699999999999999988442221110 00011357899999999999999999999999874
No 324
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.44 E-value=4e-05 Score=62.19 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=44.8
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHH
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEK 289 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~ 289 (577)
...+||+||+..+++.+|.+++..++....... .+..+|.++|||||+|.+.++|..|+..
T Consensus 11 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 11 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 334699999999999999988442221111111 2256799999999999999999999865
No 325
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.43 E-value=2.7e-05 Score=66.11 Aligned_cols=60 Identities=17% Similarity=0.059 Sum_probs=45.9
Q ss_pred cccccCCCcccchhhhcCCCC---C-CcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHh
Q 008117 231 DAGAGKEDESVQSVEKNEPTK---S-PENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLT 291 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~k---s-~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~ 291 (577)
.+||+||+..+++++|.+++. . +...... ..+..+|.++|||||+|.+.++|..|+..|+
T Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 10 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVY-ASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHSTTEEEEECC-SSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred EEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEE-ccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 359999999999999988744 1 2222111 1235678999999999999999999999885
No 326
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.42 E-value=3.6e-05 Score=71.80 Aligned_cols=62 Identities=16% Similarity=0.057 Sum_probs=46.6
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++.+|.+++..++.+.......+.+|.++|||||+|.+.++|..|+..|++.
T Consensus 91 l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~ 152 (177)
T 2f3j_A 91 LLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV 152 (177)
T ss_dssp EEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCC
Confidence 49999999999999998844222111111112337899999999999999999999988875
No 327
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.41 E-value=4.2e-05 Score=64.27 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=44.8
Q ss_pred cccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~k------s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|.+++. ++.+.. + .+.++|||||+|.+.++|..|+..|++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~------~-~~~~~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMIT------E-HTSNDPYCFVEFYEHRDAAAALAAMNGR 78 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEEC------C-CCSSCCEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEe------c-CCCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 34469999999999999998844 222222 1 2336899999999999999999988875
No 328
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.38 E-value=4e-05 Score=63.63 Aligned_cols=60 Identities=17% Similarity=0.075 Sum_probs=42.1
Q ss_pred ccccCCCcccchhhhc----CCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKN----EPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~----e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++.+|. +++..++.........+..+ +|||||+|.+.++|..|+..|++.
T Consensus 12 l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~ 75 (96)
T 2dgx_A 12 VQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRY 75 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTE
T ss_pred EEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCC
Confidence 5999999999999998 66331111111111112222 899999999999999999999875
No 329
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.38 E-value=2.3e-05 Score=64.93 Aligned_cols=62 Identities=11% Similarity=0.024 Sum_probs=45.4
Q ss_pred ccccccCCCcccchhhhc----CCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKN----EPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~----e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|. +++..++....... ..+|.++|||||+|.+.++|..|+..|++.
T Consensus 9 ~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 74 (97)
T 1nu4_A 9 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILV--SRSLKMRGQAFVIFKEVSSATNALRSMQGF 74 (97)
T ss_dssp SEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEEC--CHHHHHTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEE--EcCCCcCcEEEEEeCCHHHHHHHHHHhCCC
Confidence 446999999999999888 66332221111111 135778999999999999999999998874
No 330
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.37 E-value=8.1e-05 Score=63.97 Aligned_cols=59 Identities=15% Similarity=0.043 Sum_probs=44.4
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCC-CCCCCCCCCCceEEEEeCCHHHHHHHHHH
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNE-TGNKESHDPTNFGVVTEEDRKADQEALEK 289 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~-~~~~~~g~~kgfgfV~f~~~e~a~~Al~~ 289 (577)
.+||+||+..+++.+|.+++..++.+.... ..+..+|.++|||||+|.+.++|..||..
T Consensus 29 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 29 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp EEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 359999999999999998844222111111 12356789999999999999999999876
No 331
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.36 E-value=4.7e-05 Score=61.71 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=44.2
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCC-CCCCC-CCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKES-HDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~-g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++.+|.+++..++....... .+..+ +.++|||||+|.+.++|..|+..|++.
T Consensus 7 l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (88)
T 4a8x_A 7 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG 70 (88)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCC
Confidence 599999999999999888332221111110 11223 338999999999999999999998874
No 332
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.35 E-value=4.4e-05 Score=59.98 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=42.5
Q ss_pred ccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHH
Q 008117 232 AGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEK 289 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~k---s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~ 289 (577)
+||+||+..+++++|..++. .+....- ..+..+|.++|||||+|.+.++|..|+..
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i--~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFGEVESIEL--PMDNKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHSCCSEECC--CCSCCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEE--EecCCCCCcCCEEEEEECCHHHHHHHHHh
Confidence 48999999999999988843 2211111 12256789999999999999999999874
No 333
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=4.7e-05 Score=63.26 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=45.3
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|..++..++... . ...++.++|||||+|.+.++|..|+..|++.
T Consensus 20 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (97)
T 2e5j_A 20 ADVYVGNLPRDARVSDLKRALRELGSVP-L---RLTWQGPRRRAFLHYPDSAAAQQAVSCLQGL 79 (97)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCC-S---EEEEETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CEEEEeCCCCcCcHHHHHHHHHhcCCEE-E---EEEcCCCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 3469999999999999988844221111 0 0224578999999999999999999988864
No 334
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.33 E-value=8.4e-05 Score=60.54 Aligned_cols=56 Identities=11% Similarity=-0.034 Sum_probs=44.0
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++.+|.+++....+.. ... ..++|||||+|.+.++|..|+..|++.
T Consensus 8 l~V~nLp~~~t~~~l~~~F~~~~v~~-~~i-----~~~~g~afV~f~~~~~a~~Ai~~l~g~ 63 (88)
T 1wg1_A 8 ILVKNLPQDSNCQEVHDLLKDYDLKY-CYV-----DRNKRTAFVTLLNGEQAQNAIQMFHQY 63 (88)
T ss_dssp EEEESCCSSCCHHHHHHHTCSSCCCC-EEE-----EGGGTEEEECCSCHHHHHHHHHHHTTE
T ss_pred EEEeCCCCCCCHHHHHHHHhhCCeEE-EEE-----eCCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 59999999999999998855332211 111 167999999999999999999998875
No 335
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.33 E-value=2.8e-05 Score=67.76 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=45.7
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~-~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++++|.+++..++.+..... .+..+|.++|||||+|.+.++|..|+ .|++.
T Consensus 38 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~ 100 (124)
T 2jwn_A 38 SVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDET 100 (124)
T ss_dssp EEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCC
Confidence 3599999999999999988442221111111 12467899999999999999999999 67764
No 336
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.30 E-value=6.9e-05 Score=62.63 Aligned_cols=58 Identities=7% Similarity=-0.040 Sum_probs=43.9
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++++|..++..++..... ....++|||||+|.+.++|..|+..|++.
T Consensus 29 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~-----~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 86 (101)
T 2la4_A 29 TAYIGNIPHFATEADLIPLFQNFGFILDF-----KHYPEKGCCFIKYDTHEQAAVCIVALANF 86 (101)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCCSEE-----EEETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred EEEEcCCCcccCHHHHHHHHHhCCCEEEE-----EEecCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 36999999999999999884422211111 11257899999999999999999988864
No 337
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.28 E-value=6.4e-05 Score=64.76 Aligned_cols=56 Identities=13% Similarity=0.012 Sum_probs=41.4
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++.+|.+++..++.+.......+ |||||+|.+.++|..||..|++.
T Consensus 19 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~ 74 (115)
T 3beg_B 19 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNT 74 (115)
T ss_dssp EEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCC
Confidence 599999999999999988442221111111001 89999999999999999988764
No 338
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.28 E-value=5.7e-05 Score=65.05 Aligned_cols=62 Identities=10% Similarity=-0.035 Sum_probs=44.7
Q ss_pred cccccccc--cCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 227 KETQDAGA--GKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 227 ~~~~~~~v--~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+++.+|| +||+..+++++|++++...+......- . ..+|||||+|.+.++|.+|+..||+.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i---~--~~rgfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM---P--PNKPYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC---C--TTCSCEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEE---e--CCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 34555799 679999999999988441111111111 1 13799999999999999999999885
No 339
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.25 E-value=0.00011 Score=60.94 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=43.6
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|.+++..++....... .. .+|||||+|.+.++|..|+..|++.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~---~~--~~g~afV~f~~~~~A~~A~~~l~g~ 76 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDH---VK--GDSFAYIQYESLDAAQAACAKMRGF 76 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEE---CS--SSCCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE---eC--CCCEEEEEECCHHHHHHHHHHHCCC
Confidence 344699999999999999988442221111111 11 2789999999999999999998864
No 340
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.23 E-value=0.00011 Score=62.81 Aligned_cols=58 Identities=12% Similarity=-0.049 Sum_probs=44.1
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++.+|.+++..++.+..... ..++|||||+|.+.++|..|+..|++.
T Consensus 12 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-----~~~~g~afV~f~~~~~A~~Ai~~l~g~ 69 (111)
T 1whx_A 12 VILAKNLPAGTLAAEIQETFSRFGSLGRVLL-----PEGGITAIVEFLEPLEARKAFRHLAYS 69 (111)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-----CSSSSCEEEEESCHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-----eCCCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 4699999999999999988442222111111 136899999999999999999999874
No 341
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.23 E-value=0.00015 Score=61.74 Aligned_cols=58 Identities=19% Similarity=0.106 Sum_probs=43.8
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|..++..++....... .+|||||+|.+.++|..|+..|++.
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i-------~kg~afV~f~~~~~A~~Ai~~l~g~ 88 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFGPFGPMKEVKI-------LNGFAFVEFEEAESAAKAIEEVHGK 88 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEE-------ETTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-------ECCEEEEEECCHHHHHHHHHHcCCC
Confidence 344699999999999999988442222211111 1799999999999999999998875
No 342
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.20 E-value=0.00016 Score=60.24 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=44.4
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|..++..++...... ....+|||||+|.+.++|..|+..|++.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~-----~~~~kg~afV~f~~~~~a~~a~~~l~g~ 74 (99)
T 2cpj_A 16 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVF-----IHKDKGFGFIRLETRTLAEIAKVELDNM 74 (99)
T ss_dssp TEEEEESCCTTCCHHHHHHHTSTTCCCSEEE-----EETTTTEEEEECSSSHHHHHHHHHHTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCCeEEEE-----EecCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3469999999999999998855332211111 1234899999999999999999998875
No 343
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.20 E-value=8.2e-05 Score=63.19 Aligned_cols=57 Identities=12% Similarity=0.010 Sum_probs=41.6
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++.+|.+++..++.+.......+ |||||+|.+.++|..||..|++.
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~ 73 (108)
T 1x4c_A 17 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNT 73 (108)
T ss_dssp EEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcC
Confidence 3599999999999999988442221111111001 89999999999999999988764
No 344
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.17 E-value=7.2e-05 Score=61.49 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=42.5
Q ss_pred cccccCCCcccchhhhcCCCCCCcc-cccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPEN-LKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~-~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
.+||+||+..+++++|.+++..++. .... .-.++|||||+|.+.++|..|+..|++
T Consensus 10 ~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~------~~~~~g~afV~f~~~~~A~~A~~~l~g 66 (93)
T 2cqh_A 10 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQ------VLLKSGYAFVDYPDQNWAIRAIETLSG 66 (93)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHTTCCCSSC------EEEETTEEEECCSCHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCceEEE------EEcCCCEEEEEECCHHHHHHHHHHccC
Confidence 3599999999999999888441111 1100 013589999999999999999999987
No 345
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.17 E-value=9.1e-05 Score=61.88 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=42.0
Q ss_pred ccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~k---s~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++.+|.+++. .+...... .+ ++|||||+|.+.++|..|+..|++.
T Consensus 3 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~---~~----~~g~afV~f~~~~~a~~A~~~l~g~ 60 (101)
T 2hvz_A 3 VYVGNLGTGAGKGELERAFSYYGPLRTVWIA---RN----PPGFAFVEFEDPRDAEDAVRGLDGK 60 (101)
T ss_dssp EEEECCCSSCSHHHHHHHHHHHCCCSEEEEE---SS----SSSEEEEECSSHHHHHHHHHHHHHS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe---eC----CCCEEEEEECCHHHHHHHHHHHCCC
Confidence 49999999999999988843 22211100 01 7899999999999999999988874
No 346
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.17 E-value=0.00013 Score=60.63 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=43.7
Q ss_pred cccccccCCCc-ccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDE-SVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~-~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+. .+++++|..++..++....... ++|||||+|.+.++|..|+..+++.
T Consensus 22 ~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (97)
T 2xnq_A 22 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-------KNAFGFIQFDNPQSVRDAIEXESQE 80 (97)
T ss_dssp TCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-------CSSEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCC
Confidence 34469999998 9999999888543322211111 3899999999999999999988774
No 347
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.00016 Score=59.82 Aligned_cols=58 Identities=10% Similarity=0.030 Sum_probs=43.6
Q ss_pred cccccccCCCc-ccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDE-SVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~-~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+. .+++.+|..++..++...... -++|||||+|.+.++|..|+..|++.
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~-------i~~g~afV~f~~~~~A~~A~~~l~g~ 68 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQIN-------IKNAFGFIQFDNPQSVRDAIECESQE 68 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEE-------EETTEEEEEESCHHHHHHHHHHHTCS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEE-------EeCCEEEEEECCHHHHHHHHHHcCCC
Confidence 33469999998 999999998844232221111 13899999999999999999998765
No 348
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.12 E-value=1.9e-05 Score=66.34 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=42.3
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHH
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALE 288 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~ 288 (577)
+||+||+..+++++|..++..++.........+.+|.++|||||+|.+.++|..|+.
T Consensus 12 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 12 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 599999999999999988442221111111112388999999999999999999988
No 349
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.09 E-value=0.00014 Score=59.42 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=42.4
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++.+|..++..++....... .+|||||+|.+.++|..|+..|++.
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~-------~~g~afV~f~~~~~A~~A~~~l~g~ 65 (90)
T 2dnq_A 10 KLFIGNLPREATEQEIRSLFEQYGKVLECDI-------IKNYGFVHIEDKTAAEDAIRNLHHY 65 (90)
T ss_dssp EEEEESCCSSCCHHHHHHHHHTSSCEEEEEE-------ETTEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-------ECCEEEEEECCHHHHHHHHHHhcCC
Confidence 3599999999999999888442221111111 1789999999999999999998874
No 350
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.08 E-value=0.00014 Score=60.53 Aligned_cols=58 Identities=10% Similarity=0.006 Sum_probs=44.3
Q ss_pred cccccccCCCcccchhhhcCCCCCC--cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 229 TQDAGAGKEDESVQSVEKNEPTKSP--ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 229 ~~~~~v~nl~~~~~~~~l~e~~ks~--~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
...+||+||+..+++.+|..++..+ +..... ..++|||||+|.+.++|..|+..|++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~-------~~~~g~afV~f~~~~~A~~A~~~l~g~ 74 (99)
T 2cpd_A 15 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV-------KKIRDYAFVHFSNREDAVEAMKALNGK 74 (99)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEE-------EECSSEEEEEESSHHHHHHHHHHHSSE
T ss_pred cCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEE-------EEeCCeEEEEeCCHHHHHHHHHHhCCC
Confidence 3446999999999999998884422 222111 235789999999999999999988875
No 351
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.08 E-value=0.00026 Score=57.91 Aligned_cols=52 Identities=19% Similarity=0.074 Sum_probs=36.9
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQE 285 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~ 285 (577)
..+||+||+..+++++|.+++..++........ ..++|||||+|.+.++|..
T Consensus 12 ~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~----~~srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 12 SKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIP----KPFRAFAFVTFADDKVAQS 63 (89)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEECC----SSCCSEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEe----eCCCCEEEEEECCHHHHHH
Confidence 346999999999999999884422222111111 1379999999999999873
No 352
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.00 E-value=0.00015 Score=61.62 Aligned_cols=56 Identities=7% Similarity=0.033 Sum_probs=42.8
Q ss_pred cccccCCCcc-cchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDES-VQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~-~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+.. +++++|.+++..++....... ++|||||+|.+.++|..|+..|++.
T Consensus 29 ~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~ 85 (110)
T 1wf1_A 29 RVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGR 85 (110)
T ss_dssp EEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCC
Confidence 4699999999 999999888442221111111 5899999999999999999998874
No 353
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=96.99 E-value=0.00015 Score=68.49 Aligned_cols=108 Identities=9% Similarity=-0.010 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHh--CCceeCCeEEEEEEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCccc
Q 008117 179 SAEGVLRALRLL--NKFNIDGQELMLKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENL 256 (577)
Q Consensus 179 ~~~~A~~Al~~L--ng~~i~gr~i~V~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~~~~l~e~~ks~~~~ 256 (577)
+...+..|+... ....+.+..+.|.-..... ...+.. .. ........+||+||+..++.++|.+++..++..
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p--~p~~~~---~~-~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v 136 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKP--LPEVTD---EY-KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQV 136 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSC--CCCCCH---HH-HHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCC--Ccccch---hh-hhccccCEEEecCCCCcCCHHHHHHHHhcCCCE
Confidence 567788888776 5556665544553321100 000000 00 001112336999999999999999884422211
Q ss_pred ccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhh
Q 008117 257 KDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (577)
Q Consensus 257 k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~ 292 (577)
....-....+|.++|||||+|.+.++|..|+..++.
T Consensus 137 ~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~ 172 (193)
T 2voo_A 137 LNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ 172 (193)
T ss_dssp EEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC
T ss_pred EEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC
Confidence 111111134588999999999999999999976543
No 354
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.98 E-value=0.00033 Score=57.38 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=42.5
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|..++..++...... ..++||||+|.+.++|..|+..|++.
T Consensus 11 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~-------~~~~~afV~f~~~~~a~~A~~~l~g~ 67 (92)
T 2dgt_A 11 TKLHVGNISPTCTNQELRAKFEEYGPVIECD-------IVKDYAFVHMERAEDAVEAIRGLDNT 67 (92)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCCEEE-------ECSSEEEEEESCHHHHHHHHHHHTTE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------EECCEEEEEECCHHHHHHHHHHhCCC
Confidence 3469999999999999998844222111111 12569999999999999999998874
No 355
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.96 E-value=0.00026 Score=58.33 Aligned_cols=58 Identities=16% Similarity=0.043 Sum_probs=42.3
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++.+|..++..++..... ..+..+|. ||||+|.+.++|..|+. |++.
T Consensus 10 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~ 67 (94)
T 2e5g_A 10 SVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQH 67 (94)
T ss_dssp EEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCe
Confidence 35999999999999999885533222111 12234444 99999999999999999 7764
No 356
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=96.95 E-value=0.00019 Score=60.21 Aligned_cols=57 Identities=9% Similarity=0.087 Sum_probs=42.7
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|.+++..++.+.... ..+|||||+|.+.++|..|+..|++.
T Consensus 12 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~-------~~~~~afV~f~~~~~a~~A~~~l~g~ 68 (103)
T 2dgu_A 12 KVLFVRNLANTVTEEILEKAFSQFGKLERVK-------KLKDYAFIHFDERDGAVKAMEEMNGK 68 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHSCEEEEE-------ECSSCEEEEESSHHHHHHHHHHHTTE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE-------EECCEEEEEeCCHHHHHHHHHHHCCC
Confidence 3469999999999999998844222111110 12679999999999999999998875
No 357
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.94 E-value=0.00015 Score=61.47 Aligned_cols=58 Identities=5% Similarity=0.029 Sum_probs=42.2
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++.+|..++..++.+..... ...+|||||+|.+.++|..|+..|++.
T Consensus 27 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i-----~~~~g~afV~f~~~~~a~~A~~~l~g~ 84 (109)
T 1x4g_A 27 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRV-----FPEKGYSFVRFSTHESAAHAIVSVNGT 84 (109)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHSCEEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-----eCCCCEEEEEECCHHHHHHHHHHcCCC
Confidence 3699999999999999888441111110000 011899999999999999999998874
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=96.88 E-value=9.6e-05 Score=64.61 Aligned_cols=48 Identities=8% Similarity=0.010 Sum_probs=35.7
Q ss_pred ccccCC----CcccchhhhcCCCCCCcccccC-CCCCCCCCCCCceEEEEeCC
Q 008117 232 AGAGKE----DESVQSVEKNEPTKSPENLKDN-ETGNKESHDPTNFGVVTEED 279 (577)
Q Consensus 232 ~~v~nl----~~~~~~~~l~e~~ks~~~~k~~-~~~~~~~g~~kgfgfV~f~~ 279 (577)
+||+|| +..+++..|++++.+++-+... ...+..||.++|||||+|.+
T Consensus 5 I~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 5 IVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp EEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 399999 9999999999985533322211 12448999999999999996
No 359
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.86 E-value=0.00043 Score=56.15 Aligned_cols=52 Identities=17% Similarity=0.044 Sum_probs=37.4
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHH
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEA 286 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~A 286 (577)
.+||+||+..+++++|.+++..++........ ..++|||||+|.+.++|..|
T Consensus 7 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~----~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 7 GVFVGRCTGDMTEDELREFFSQYGDVMDVFIP----KPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp EEEEESCCSSSCHHHHHHHSTTTSCCCEEECC----SSCCSCCEEECSCHHHHHHT
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEe----cCCCCEEEEEECCHHHHHHH
Confidence 35999999999999999885533322211111 12799999999999998754
No 360
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=96.85 E-value=0.00015 Score=58.65 Aligned_cols=62 Identities=6% Similarity=-0.000 Sum_probs=42.1
Q ss_pred cccccCCCcccchhhhcCCCCCC----cccc-cC-CCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSP----ENLK-DN-ETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~----~~~k-~~-~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++++|.+++... ++.. .+ ...+-.....+|||||+|.+.++|..|+ .|++.
T Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 8 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCC
Confidence 35999999999999998874422 2100 00 0000122345899999999999999999 88764
No 361
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.85 E-value=0.00024 Score=57.07 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=41.6
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHH-hh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKL-TC 292 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l-~~ 292 (577)
..+||+||+..+++.+|.+++...+....... ..++|||||+|.+.++|..|+..| ++
T Consensus 13 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~-----~~~kg~afV~f~~~~~A~~a~~~l~~~ 71 (85)
T 2ytc_A 13 TTLYVGGLGDTITETDLRNHFYQFGEIRTITV-----VQRQQCAFIQFATRQAAEVAAEKSFNK 71 (85)
T ss_dssp CCEEEECCTTTSCHHHHHHHHHTTSCEEEEEE-----EGGGTEEEEEESSHHHHHHHHHTTTTT
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEE-----ECCCCEEEEEECCHHHHHHHHHHhcCC
Confidence 34699999999999999888332221111100 124799999999999999999987 54
No 362
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.80 E-value=0.00031 Score=57.30 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=42.0
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+++.+|..++..++...... ..++||||+|.+.++|..|+..|++.
T Consensus 10 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~-------~~~~~afV~f~~~~~a~~A~~~l~g~ 66 (90)
T 2dnp_A 10 WKIFVGNVSAACTSQELRSLFERRGRVIECD-------VVKDYAFVHMEKEADAKAAIAQLNGK 66 (90)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHHHSCEEEEE-------ECSSCEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHcCCCEEEEE-------EECCEEEEEECCHHHHHHHHHHhCCC
Confidence 3469999999999999988844221111110 12569999999999999999998874
No 363
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.79 E-value=0.0045 Score=50.69 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=57.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCc--ceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008117 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTP--KGFGFCEFESAEGVLRALRLLNKFNID 196 (577)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~--kg~gFV~f~~~~~A~~Al~~Lng~~i~ 196 (577)
+.|.|.+||+++|++++...++.++.+..+..+....+.++ -+-|||.|.+.+++......++|+.|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 57899999999999999999999998887777766544443 356899999999999999999999873
No 364
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.75 E-value=0.00059 Score=56.44 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=41.7
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+|+ .+++.+|.+++..++.+... ..+.++|||||+|.+.++|..|+..|++.
T Consensus 16 ~~l~V~n~--~~t~~~l~~~F~~~G~i~~v-----~i~~~~g~afV~f~~~~~a~~Ai~~l~g~ 72 (97)
T 1x5p_A 16 NTLYVYGE--DMTPTLLRGAFSPFGNIIDL-----SMDPPRNCAFVTYEKMESADQAVAELNGT 72 (97)
T ss_dssp SEEEEECS--SCCHHHHHHHHTTTSCEEEE-----EEETTTTEEEEEESSHHHHHHHHHHTTTE
T ss_pred CEEEEcCC--CCCHHHHHHHHhhCCCEEEE-----EecCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 34699996 78889998884422211111 11467999999999999999999998875
No 365
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=96.72 E-value=0.00028 Score=64.61 Aligned_cols=59 Identities=10% Similarity=-0.162 Sum_probs=42.8
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++++|.+++..++.+..... ....++|||||+|.+.++|..|+..|++.
T Consensus 49 l~VgNL~~~vted~L~~~Fs~fG~V~~V~i---~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~ 107 (164)
T 1sjr_A 49 IIVENLFYPVTLDVLHQIFSKFGTVLKIIT---FTKNNQFQALLQYADPVSAQHAKLSLDGQ 107 (164)
T ss_dssp EEECSCCSCCCHHHHHHHHHHHSCEEEEEE---EESSSCEEEEEEESCHHHHHHHHHHSTTB
T ss_pred EEEeCcCCCCCHHHHHHHHHhcCCEEEEEE---EeCCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 589999999999999988441111110000 01225789999999999999999999875
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=96.71 E-value=0.0005 Score=70.67 Aligned_cols=63 Identities=8% Similarity=-0.071 Sum_probs=45.7
Q ss_pred ccccccccccC--CCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 226 LKETQDAGAGK--EDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 226 ~~~~~~~~v~n--l~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+++.+||+| |+..+++++|.+++...+.+....- ..+||||||+|.+.++|.+|++.||+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~-----~~~kgfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-----PPNKPYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEEC-----CTTCSEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEE-----eCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 44566679999 5788999999888442221111111 125899999999999999999999985
No 367
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=96.61 E-value=0.00063 Score=59.87 Aligned_cols=58 Identities=12% Similarity=-0.116 Sum_probs=42.5
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCce-EEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNF-GVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgf-gfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++++|.+++...+........ .+.+|| |||+|.+.++|..|+..|++.
T Consensus 31 I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~----~~~~gfqAFVef~~~~~A~~Ai~~LnG~ 89 (130)
T 3zzy_A 31 IIVENLFYPVTLDVLHQIFSKFGTVLKIITF----TKNNQFQALLQYADPVSAQHAKLSLDGQ 89 (130)
T ss_dssp EEEESCCSCCCHHHHHHHHTTSSCEEEEEEE----EETTEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred EEECCCCCCCCHHHHHHHHhCcCCEEEEEEE----cCCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 4899999999999999984422211111110 123688 999999999999999999875
No 368
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.61 E-value=0.0093 Score=49.00 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=45.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~L 190 (577)
...++| ++|..+...+|..+|+.||. ..|.++.| .-|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 455666 99999999999999999994 44666666 48999999999999999876
No 369
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.57 E-value=0.00088 Score=55.24 Aligned_cols=53 Identities=2% Similarity=-0.081 Sum_probs=39.9
Q ss_pred ccccCCCcccchhhhc----CCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKN----EPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~----e~~ks~-~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||.||+..++.+.|. +++..+ +.+.+ -+| |||||.|.+.++|..|++.|++.
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~------Vtg---G~AfV~F~~~esA~~A~~~l~G~ 69 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLS------ITG---CSAILRFINQDSAERAQKRMENE 69 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEE------CCT---TCEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEE------Eec---CEEEEEECCHHHHHHHHHHhcCC
Confidence 6999999999988754 453333 12221 133 99999999999999999999874
No 370
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.57 E-value=0.00083 Score=58.67 Aligned_cols=57 Identities=11% Similarity=-0.074 Sum_probs=41.5
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCce-EEEEeCCHHHHHHHHHHHhhh
Q 008117 232 AGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNF-GVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 232 ~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgf-gfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+||+..+++++|.+++...+........ . + .|| |||+|.+.++|..|+..|++.
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~-~---~-~Gf~aFVef~~~~~A~~A~~~LnG~ 85 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-K---R-NGIQAMVEFESVLCAQKAKAALNGA 85 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHTTTSCEEEEEEE-E---S-SSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEcCcCCCCCHHHHHHHHHhcCCEEEEEEE-e---C-CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 5899999999999999884422211111111 1 1 286 999999999999999999875
No 371
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=96.55 E-value=0.0011 Score=57.66 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=41.4
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+|+ .+++++|.+++..++.+... ..+.++|||||+|.+.++|..|+..|++.
T Consensus 40 ~~lfVgnl--~~te~~L~~~F~~~G~I~~v-----~i~~~kg~aFV~f~~~~~A~~Ai~~lng~ 96 (121)
T 2bz2_A 40 NTLYVYGE--DMTPTLLRGAFSPFGNIIDL-----SMDPPRNCAFVTYEKMESADQAVAELNGT 96 (121)
T ss_dssp CEEEEECS--SCCHHHHHHHHSTTCCCSCE-----EEETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CEEEEcCC--CCCHHHHHHHHHccCCEEEE-----EEeCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 34699996 58888888884422222111 11367999999999999999999998875
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.46 E-value=0.00049 Score=57.73 Aligned_cols=53 Identities=13% Similarity=-0.019 Sum_probs=34.9
Q ss_pred cccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhhHH
Q 008117 239 ESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVE 295 (577)
Q Consensus 239 ~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~i~ 295 (577)
..+++.+|.+++..++.+..... .+.++|||||+|.+.++|..|+..++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i----~~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g 79 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVL----SSKKPGTAVVEFATVKAAELAVQNEVGLVD 79 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEE----ESSSSSEEEEEESCHHHHHHHHHTCCBCSS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEE----ccCCCCEEEEEECCHHHHHHHHHhcCCCCC
Confidence 45677777776332221111111 147899999999999999999998766543
No 373
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.27 E-value=0.019 Score=47.70 Aligned_cols=69 Identities=22% Similarity=0.355 Sum_probs=57.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhh---c--CceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 008117 126 KPQTKVYVGKIAPTADSDFVLSVLKV---C--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (577)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~---~--G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i 200 (577)
....+|.|.|||+.+.++.|.-+|.. . |.|..|.... +-|+|+|.+...|.+.|.. ..+.|+|..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 34689999999999999999999986 2 4777776633 4789999999999999873 4788889888
Q ss_pred EEE
Q 008117 201 MLK 203 (577)
Q Consensus 201 ~V~ 203 (577)
.|.
T Consensus 77 sV~ 79 (104)
T 2dhx_A 77 SLR 79 (104)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 374
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=96.18 E-value=0.0021 Score=54.28 Aligned_cols=28 Identities=14% Similarity=0.000 Sum_probs=25.7
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 266 SHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 266 ~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
++.++|||||.|.+.++|.+|+..||+.
T Consensus 52 ~~~~~G~~FV~f~~~~~A~~Ai~~lnG~ 79 (105)
T 2pe8_A 52 PDDEAVRIFLEFERVESAIKAVVDLNGR 79 (105)
T ss_dssp CTTTSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCcEEEEEEECCHHHHHHHHHHHCCC
Confidence 4688999999999999999999999875
No 375
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.17 E-value=0.0013 Score=64.11 Aligned_cols=59 Identities=12% Similarity=0.025 Sum_probs=41.9
Q ss_pred ccccccCCCccc---------chhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 230 QDAGAGKEDESV---------QSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 230 ~~~~v~nl~~~~---------~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+||+||+..+ ++.+|..++..++.+..... ..++|||||+|.+.++|..|++.|++.
T Consensus 135 rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v-----~~~kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 135 KTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRY-----VESKNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp CEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEE-----EGGGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred ceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEE-----ECCCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 346999999988 68888777332221111111 135899999999999999999998874
No 376
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=96.10 E-value=0.00069 Score=57.19 Aligned_cols=30 Identities=10% Similarity=-0.037 Sum_probs=26.5
Q ss_pred CCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 264 KESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 264 ~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+.+|.++|||||.|.+.++|.+|+..||+.
T Consensus 62 ~~~~~~~G~~fV~f~~~~~A~~A~~~lng~ 91 (104)
T 1jmt_A 62 NLGDHLVGNVYVKFRREEDAEKAVIDLNNR 91 (104)
T ss_dssp SSSSSSEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCccEEEEEEECCHHHHHHHHHHHCCC
Confidence 344789999999999999999999999874
No 377
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.82 E-value=0.028 Score=48.17 Aligned_cols=70 Identities=13% Similarity=0.090 Sum_probs=56.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-eEEEEEE
Q 008117 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-QELMLKV 204 (577)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~g-r~i~V~~ 204 (577)
..+-|.|-+.|+.. -..|...|..||.|+...... ...|-.|.|.+..+|.+||. .||..|+| -.|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 46778888999875 567888999999999887621 23699999999999999999 49999985 5666654
No 378
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.77 E-value=0.011 Score=48.83 Aligned_cols=54 Identities=11% Similarity=0.050 Sum_probs=45.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 008117 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (577)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Ln 191 (577)
..++| ++|..+...+|..+|+.|| -..|.++.| .-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999999 556777777 489999999999999999764
No 379
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=95.75 E-value=0.0073 Score=50.87 Aligned_cols=27 Identities=19% Similarity=-0.103 Sum_probs=24.9
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 267 HDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 267 g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
+.++|||||.|.+.++|.+|+..||+.
T Consensus 56 ~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 56 VPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred cCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 578999999999999999999999874
No 380
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.60 E-value=0.0055 Score=52.10 Aligned_cols=25 Identities=16% Similarity=0.233 Sum_probs=23.4
Q ss_pred CCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 269 PTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 269 ~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
++|||||+|.+.++|..|+..|++.
T Consensus 63 ~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 63 PDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp TTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCEEEEEEECCHHHHHHHHHHcCCC
Confidence 7999999999999999999999874
No 381
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.37 E-value=0.0023 Score=52.53 Aligned_cols=61 Identities=15% Similarity=0.052 Sum_probs=41.1
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 231 ~~~v~nl~~~~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+||+..+++.+|..++..++....... -......|.|||+|.+.++|..|+..|++.
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~--i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~ 77 (96)
T 2e44_A 17 KLQIRNIPPHLQWEVLDSLLVQYGVVESCEQ--VNTDSETAVVNVTYSSKDQARQALDKLNGF 77 (96)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHSCEEEEEE--ECCSSSSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEEcCCCCCCHHHHHHHHHhcCCeEEEEE--eecCCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3699999999999999988441111111100 001122344999999999999999988874
No 382
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.66 E-value=0.034 Score=45.85 Aligned_cols=69 Identities=9% Similarity=0.096 Sum_probs=52.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCc--ceEEEEEeCCHHHHHHHHHHhCCceeC
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTP--KGFGFCEFESAEGVLRALRLLNKFNID 196 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~--kg~gFV~f~~~~~A~~Al~~Lng~~i~ 196 (577)
+-.|.|..||+++|++++.+.++.+-.+.....+....+-++ -+-|||.|.+.+++......++|+.|-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 567999999999999999888887666544444333323222 245899999999999999999998873
No 383
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.13 E-value=0.064 Score=46.60 Aligned_cols=76 Identities=13% Similarity=0.053 Sum_probs=53.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCC-------------CC-CcceEEEEEeCCHHHHHHHHHHhCCc
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS-------------NG-TPKGFGFCEFESAEGVLRALRLLNKF 193 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~-------------tg-~~kg~gFV~f~~~~~A~~Al~~Lng~ 193 (577)
..-|.|-+.|+..+ ..+...|++||.|..-.-..... .+ ...+|-.|.|.+..+|.+||.. ||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 45677778876554 56678999999987621111100 00 1246889999999999999994 999
Q ss_pred eeCCeEEEEEEc
Q 008117 194 NIDGQELMLKVD 205 (577)
Q Consensus 194 ~i~gr~i~V~~a 205 (577)
.|+|..|-|...
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999987777654
No 384
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=93.78 E-value=0.032 Score=47.99 Aligned_cols=28 Identities=11% Similarity=-0.065 Sum_probs=25.5
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 266 SHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 266 ~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
++.++||+||+|.+.++|.+|+..||+.
T Consensus 67 ~~~~~G~~FV~F~~~e~A~~Ai~~LnGr 94 (118)
T 3ue2_A 67 DAEIIVKIFVEFSIASETHKAIQALNGR 94 (118)
T ss_dssp TCEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCcceEEEEEEECCHHHHHHHHHHHCCC
Confidence 5678899999999999999999999875
No 385
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.18 E-value=0.082 Score=56.12 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=42.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 188 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~ 188 (577)
.++|||. ++..+++.+|..+|+.||.|.++.+..+. | .|+.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 5899997 79999999999999999999999886542 2 799999999999987764
No 386
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.95 E-value=0.1 Score=45.03 Aligned_cols=55 Identities=5% Similarity=-0.085 Sum_probs=37.7
Q ss_pred cccccCCCcc-cchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCC-HHHHHHHHHHH
Q 008117 231 DAGAGKEDES-VQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEED-RKADQEALEKL 290 (577)
Q Consensus 231 ~~~v~nl~~~-~~~~~l~e~~ks~~~~k~~~~~~~~~g~~kgfgfV~f~~-~e~a~~Al~~l 290 (577)
+++|+||+.. ++..+|++++...+.+..++- ..| ..+|||.|.+ ..+|..|+.++
T Consensus 20 il~v~~l~~~~~sredLke~F~~~G~V~~Vd~---~~g--~~tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 20 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDF---VRG--AKEGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp EEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC---CTT--CSEEEEEESSCHHHHHHHHHHT
T ss_pred EEEEecCCCCcCCHHHHHHHHHhcCCEEEEEE---ecC--CCEEEEEECCChHHHHHHHHHh
Confidence 4688999999 999999988552222221111 111 2269999999 78999988875
No 387
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=91.68 E-value=0.11 Score=44.29 Aligned_cols=25 Identities=16% Similarity=-0.053 Sum_probs=23.4
Q ss_pred CCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 269 PTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 269 ~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
++|||||.|.+.++|.+|+..||+.
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 5899999999999999999999975
No 388
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=86.70 E-value=0.37 Score=45.65 Aligned_cols=30 Identities=13% Similarity=-0.007 Sum_probs=27.1
Q ss_pred CCCCCCCceEEEEeCCHHHHHHHHHHHhhh
Q 008117 264 KESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 264 ~~~g~~kgfgfV~f~~~e~a~~Al~~l~~~ 293 (577)
..+|.++||+||+|.+.++|.+|+..|++.
T Consensus 169 ~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr 198 (222)
T 3dxb_A 169 EEDAEIIVKIFVEFSIASETHKAIQALNGR 198 (222)
T ss_dssp STTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccCcCceeEEEEEECCHHHHHHHHHHhcCc
Confidence 456789999999999999999999999875
No 389
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=80.55 E-value=3.5 Score=44.29 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=45.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 008117 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (577)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Ln 191 (577)
...++|+ +|..+...+|..+|+.||. ..|.++.+ ..|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4566676 8889999999999999994 45666655 489999999999999999884
No 390
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.38 E-value=5.3 Score=32.28 Aligned_cols=21 Identities=19% Similarity=-0.043 Sum_probs=18.4
Q ss_pred eEEEEeCCHHHHHHHHHHHhhh
Q 008117 272 FGVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 272 fgfV~f~~~e~a~~Al~~l~~~ 293 (577)
.+||+|.+.++|..|+. |++.
T Consensus 51 ~~fVtF~d~~sAlaAi~-mnG~ 71 (91)
T 2dnr_A 51 KMWVTFLEGSSALNVLS-LNGK 71 (91)
T ss_dssp SEEEEESSHHHHHHGGG-GTTC
T ss_pred CEEEEECChHHHHHHHh-cCCe
Confidence 48999999999999998 7765
No 391
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=48.55 E-value=34 Score=25.93 Aligned_cols=67 Identities=9% Similarity=0.139 Sum_probs=40.4
Q ss_pred eEEEc-CCCCCCCHHHHHHHHhhcCc-----eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008117 130 KVYVG-KIAPTADSDFVLSVLKVCGT-----VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (577)
Q Consensus 130 tlfVg-nLp~~~te~~L~~~F~~~G~-----v~~~~i~~~~~tg~~kg~gFV~f~~~~~A~~Al~~Lng~~i~gr~i~V~ 203 (577)
+|||. +--..+...+|..++..-+. |-.+.|.. .|.||+.... .+..++..|++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 45664 22335666777777775543 44555543 3889887754 3667888899999999999886
Q ss_pred Ec
Q 008117 204 VD 205 (577)
Q Consensus 204 ~a 205 (577)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 392
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.76 E-value=12 Score=30.36 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=18.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhh
Q 008117 273 GVVTEEDRKADQEALEKLTCM 293 (577)
Q Consensus 273 gfV~f~~~e~a~~Al~~l~~~ 293 (577)
+||+|.+.++|..||. |++.
T Consensus 61 ~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 61 MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp EEEECSCSHHHHHHHH-GGGS
T ss_pred EEEEEcChHHHHHHHh-cCCe
Confidence 8999999999999998 7764
No 393
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=25.92 E-value=2e+02 Score=25.78 Aligned_cols=46 Identities=11% Similarity=0.036 Sum_probs=31.9
Q ss_pred CCHHHHHHHH--hhcCceEEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHH
Q 008117 140 ADSDFVLSVL--KVCGTVKSWKRAQYPSNGTPKGFGFCEFES-AEGVLRALR 188 (577)
Q Consensus 140 ~te~~L~~~F--~~~G~v~~~~i~~~~~tg~~kg~gFV~f~~-~~~A~~Al~ 188 (577)
.+...|...| +.|.++....+ .+ ...+.|++.|.|.+ ......|+.
T Consensus 33 ~s~~~l~~~~~~~~F~p~kv~~l-~~--~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTRVRPL-WN--YLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSEEEEE-EC--SSBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCceeEec-cc--CCCCceeEEEEecCChHHHHHHHH
Confidence 5567899977 99998775444 33 23577999999995 445555554
Done!