Query 008119
Match_columns 577
No_of_seqs 293 out of 1797
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 19:42:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0797 Actin-related protein 100.0 3E-82 6.5E-87 654.6 20.7 520 1-561 16-615 (618)
2 PTZ00452 actin; Provisional 100.0 1.4E-65 3.1E-70 545.7 31.7 310 172-561 50-375 (375)
3 PTZ00466 actin-like protein; P 100.0 8E-65 1.7E-69 540.6 31.5 308 172-561 57-380 (380)
4 PTZ00281 actin; Provisional 100.0 1.2E-63 2.5E-68 531.9 30.8 310 172-561 51-376 (376)
5 KOG0676 Actin and related prot 100.0 2.5E-64 5.5E-69 522.5 24.8 305 172-561 52-372 (372)
6 PTZ00004 actin-2; Provisional 100.0 3.5E-62 7.6E-67 521.1 31.5 311 172-561 51-378 (378)
7 KOG0679 Actin-related protein 100.0 9.3E-62 2E-66 489.8 25.8 340 172-560 55-425 (426)
8 PTZ00280 Actin-related protein 100.0 3.1E-60 6.7E-65 512.0 32.3 315 172-560 52-409 (414)
9 PF00022 Actin: Actin; InterP 100.0 1.8E-59 4E-64 502.8 26.1 322 173-561 45-393 (393)
10 KOG0677 Actin-related protein 100.0 5.2E-59 1.1E-63 447.6 17.8 306 172-558 51-385 (389)
11 smart00268 ACTIN Actin. ACTIN 100.0 9.2E-57 2E-61 478.9 31.3 313 172-561 45-373 (373)
12 cd00012 ACTIN Actin; An ubiqui 100.0 4.8E-55 1.1E-59 465.4 30.0 310 172-559 44-371 (371)
13 COG5277 Actin and related prot 100.0 6.2E-54 1.3E-58 459.9 26.6 349 172-561 52-444 (444)
14 KOG0680 Actin-related protein 100.0 5.4E-53 1.2E-57 416.9 22.8 327 174-561 42-399 (400)
15 KOG0678 Actin-related protein 100.0 3.8E-39 8.2E-44 319.2 15.3 314 172-558 57-407 (415)
16 KOG0681 Actin-related protein 100.0 3.2E-36 6.8E-41 314.9 21.2 169 176-364 68-241 (645)
17 PRK13930 rod shape-determining 100.0 1.9E-29 4.2E-34 265.0 21.0 250 173-517 46-305 (335)
18 PRK13927 rod shape-determining 100.0 1.6E-29 3.4E-34 265.7 20.2 250 173-517 43-301 (334)
19 TIGR00904 mreB cell shape dete 99.9 2.1E-26 4.6E-31 242.0 18.6 254 172-518 43-305 (333)
20 PRK13929 rod-share determining 99.9 4.7E-25 1E-29 231.9 17.7 245 173-518 42-304 (335)
21 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 9.7E-23 2.1E-27 211.4 18.7 249 173-517 39-298 (326)
22 PRK13928 rod shape-determining 99.9 1.2E-22 2.7E-27 213.7 17.3 250 173-518 41-301 (336)
23 COG1077 MreB Actin-like ATPase 99.7 2.2E-16 4.7E-21 159.2 16.3 251 172-518 45-309 (342)
24 TIGR02529 EutJ ethanolamine ut 99.4 7E-12 1.5E-16 125.8 16.3 135 192-359 28-165 (239)
25 PRK15080 ethanolamine utilizat 99.2 7.9E-10 1.7E-14 112.8 17.6 138 189-359 52-192 (267)
26 PRK09472 ftsA cell division pr 98.9 6.5E-09 1.4E-13 112.9 10.8 94 249-361 165-263 (420)
27 TIGR01174 ftsA cell division p 98.8 1.3E-08 2.7E-13 108.9 10.5 90 255-363 163-257 (371)
28 PTZ00400 DnaK-type molecular c 98.6 4.8E-07 1E-11 103.7 15.2 91 239-330 177-275 (663)
29 CHL00094 dnaK heat shock prote 98.6 6.8E-07 1.5E-11 101.9 16.2 91 239-330 138-236 (621)
30 COG0849 ftsA Cell division ATP 98.6 1.6E-07 3.4E-12 100.8 10.1 90 254-361 168-262 (418)
31 TIGR01991 HscA Fe-S protein as 98.6 4.9E-07 1.1E-11 102.5 14.3 92 239-331 132-231 (599)
32 PTZ00186 heat shock 70 kDa pre 98.6 7.7E-07 1.7E-11 101.6 14.6 91 239-330 163-261 (657)
33 PLN03184 chloroplast Hsp70; Pr 98.6 1E-06 2.2E-11 101.1 15.6 91 239-330 175-273 (673)
34 TIGR02350 prok_dnaK chaperone 98.5 8.9E-07 1.9E-11 100.6 14.4 91 239-330 133-232 (595)
35 PRK00290 dnaK molecular chaper 98.5 1E-06 2.2E-11 100.7 14.1 91 239-330 136-234 (627)
36 PRK13411 molecular chaperone D 98.5 1.3E-06 2.9E-11 100.0 14.3 91 239-330 136-235 (653)
37 PRK11678 putative chaperone; P 98.5 4.9E-06 1.1E-10 91.1 17.2 86 239-326 152-260 (450)
38 PRK13410 molecular chaperone D 98.4 2.1E-06 4.6E-11 98.3 14.0 91 239-330 138-236 (668)
39 PRK05183 hscA chaperone protei 98.4 1.2E-06 2.5E-11 99.8 11.3 92 239-331 152-251 (616)
40 PRK01433 hscA chaperone protei 98.4 2.6E-06 5.5E-11 96.4 13.9 92 239-331 144-243 (595)
41 PTZ00009 heat shock 70 kDa pro 98.4 2.5E-06 5.5E-11 97.7 14.0 91 239-330 143-243 (653)
42 PF00012 HSP70: Hsp70 protein; 98.2 3.6E-06 7.8E-11 95.6 8.2 91 239-330 138-237 (602)
43 TIGR01175 pilM type IV pilus a 98.0 0.0001 2.2E-09 78.0 14.3 92 249-359 142-245 (348)
44 PF11104 PilM_2: Type IV pilus 97.6 0.00031 6.8E-09 74.3 10.2 124 212-358 87-236 (340)
45 COG0443 DnaK Molecular chapero 97.5 0.001 2.2E-08 75.3 13.8 108 215-329 105-220 (579)
46 PRK13917 plasmid segregation p 97.4 0.00087 1.9E-08 71.1 10.1 69 263-331 151-232 (344)
47 TIGR03739 PRTRC_D PRTRC system 97.0 0.0035 7.7E-08 65.8 10.2 113 213-332 84-215 (320)
48 COG4972 PilM Tfp pilus assembl 96.2 0.035 7.6E-07 57.4 10.1 79 249-329 147-236 (354)
49 PRK10719 eutA reactivating fac 95.9 0.016 3.5E-07 62.9 6.9 110 211-324 64-184 (475)
50 KOG0100 Molecular chaperones G 95.6 0.036 7.8E-07 58.4 7.8 111 239-358 175-298 (663)
51 COG4820 EutJ Ethanolamine util 95.3 0.0093 2E-07 57.3 2.1 80 259-356 115-194 (277)
52 KOG0104 Molecular chaperones G 95.3 0.25 5.5E-06 56.0 13.1 92 239-331 161-275 (902)
53 PF06277 EutA: Ethanolamine ut 93.8 0.17 3.7E-06 55.1 7.6 106 211-320 61-177 (473)
54 PF06406 StbA: StbA protein; 92.1 0.2 4.2E-06 52.6 5.0 70 262-331 137-212 (318)
55 KOG0101 Molecular chaperones H 90.4 0.92 2E-05 51.3 8.2 89 239-328 146-244 (620)
56 KOG0103 Molecular chaperones H 88.8 2.8 6.1E-05 47.6 10.4 92 239-331 140-246 (727)
57 TIGR03123 one_C_unchar_1 proba 87.9 3.8 8.2E-05 43.0 10.2 100 191-309 27-153 (318)
58 PF08841 DDR: Diol dehydratase 86.1 5.2 0.00011 40.9 9.5 88 253-358 98-191 (332)
59 PF02541 Ppx-GppA: Ppx/GppA ph 86.1 1.6 3.4E-05 45.0 6.2 70 254-326 75-152 (285)
60 PF14450 FtsA: Cell division p 86.1 3.2 7E-05 36.9 7.5 59 287-363 2-71 (120)
61 PF01968 Hydantoinase_A: Hydan 82.2 1.6 3.5E-05 45.2 4.3 33 277-309 69-102 (290)
62 KOG0102 Molecular chaperones m 72.1 28 0.0006 38.9 10.1 90 240-330 164-261 (640)
63 PRK11031 guanosine pentaphosph 69.8 15 0.00032 41.2 7.9 39 285-325 133-171 (496)
64 TIGR03706 exo_poly_only exopol 67.5 7.1 0.00015 40.5 4.5 40 285-326 126-165 (300)
65 COG0248 GppA Exopolyphosphatas 57.9 8.4 0.00018 42.9 3.1 42 283-326 128-169 (492)
66 COG4819 EutA Ethanolamine util 56.1 35 0.00077 35.8 6.9 107 211-321 63-180 (473)
67 COG1548 Predicted transcriptio 52.9 9.1 0.0002 38.7 2.1 22 284-305 130-151 (330)
68 TIGR00241 CoA_E_activ CoA-subs 52.7 68 0.0015 32.1 8.5 100 211-329 33-137 (248)
69 PRK10854 exopolyphosphatase; P 45.6 22 0.00049 39.8 4.1 40 284-325 137-176 (513)
70 PF08735 DUF1786: Putative pyr 41.0 44 0.00096 33.9 4.9 46 261-307 138-190 (254)
71 COG0145 HyuA N-methylhydantoin 33.3 52 0.0011 38.2 4.5 31 278-308 270-302 (674)
72 TIGR02261 benz_CoA_red_D benzo 30.0 31 0.00067 35.2 1.8 24 494-517 213-236 (262)
73 TIGR03192 benz_CoA_bzdQ benzoy 28.4 38 0.00081 35.2 2.1 46 471-519 221-266 (293)
74 TIGR00241 CoA_E_activ CoA-subs 28.1 61 0.0013 32.4 3.6 24 495-518 206-229 (248)
75 PF03702 UPF0075: Uncharacteri 27.6 33 0.00071 36.8 1.6 26 493-518 285-310 (364)
76 COG4012 Uncharacterized protei 27.1 96 0.0021 31.7 4.6 40 268-307 207-250 (342)
77 PRK03011 butyrate kinase; Prov 23.9 45 0.00098 35.7 1.8 26 284-310 176-201 (358)
78 TIGR03286 methan_mark_15 putat 23.8 2.9E+02 0.0062 30.1 7.8 46 470-518 335-381 (404)
79 cd01732 LSm5 The eukaryotic Sm 22.7 50 0.0011 27.0 1.5 12 16-27 65-76 (76)
80 PF00871 Acetate_kinase: Aceto 22.7 42 0.00091 36.3 1.3 27 284-311 199-225 (388)
81 PRK02308 uvsE putative UV dama 20.5 67 0.0014 33.5 2.2 13 17-29 143-158 (303)
No 1
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=3e-82 Score=654.64 Aligned_cols=520 Identities=39% Similarity=0.636 Sum_probs=382.3
Q ss_pred CCcccccCchhhHhhcCCCEEEEcCCCceeeeecCCCCCCCccceeeEEecCCC-Cccccccccccccc----cchhhhh
Q 008119 1 MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQV-PKRNVVDQMLNSQV----TTSQHVE 75 (577)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~iVihpGS~~lriG~asd~~P~~ip~~iAr~~~~~-~~~~~~~~~~~~~~----~~~~~~~ 75 (577)
.+|++.+-++|...+++.|+||||+||+|+|||+|+|.+|.++||||||+.++. -++......+.+.. +.....+
T Consensus 16 ~p~~~g~ee~q~~e~ed~k~ivih~gsqnlrig~a~d~np~tv~~~iar~~rap~sdr~~~~p~l~p~~~e~~n~~~~~e 95 (618)
T KOG0797|consen 16 QPYLKGVEETQILEEEDAKLIVIHLGSQNLRIGLAMDENPFTVPNCIARYIRAPVSDRMLNTPVLTPQHVEERNYNSAAE 95 (618)
T ss_pred CCcccCCCccccccccCCCeeEecCCcchhhccccccCCCcccccceeecccCchhhhcccCcCCCccccccccccchhh
Confidence 479999999999999999999999999999999999999999999999998761 11112222222221 1111122
Q ss_pred HHHHHHHHHhhcCCCcchHhhhcCCCCcccccccccccccccccccccccccccCCCCCCCccccccccccCCcccccCC
Q 008119 76 RERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQ 155 (577)
Q Consensus 76 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~~e~~~~ 155 (577)
+++......+.++.. +-++ +.|+.-.+.+.++++||+-.++|.+|.
T Consensus 96 f~~~lll~~s~lss~----------~~~k------------------------k~ri~v~~~~q~lkn~n~~S~aetvP~ 141 (618)
T KOG0797|consen 96 FLKILLLDESSLSSS----------ASRK------------------------KGRIDVYNQAQTLKNDNVASPAETVPD 141 (618)
T ss_pred hhHHHHHhhhhhhhH----------HHhh------------------------cCcccccCchHHhhcccccCccccCCC
Confidence 222222112222211 1112 233334467788889999999999984
Q ss_pred CC-Ccccccccccc------ccCCceEEccccccCCCCCCceEecceeCCeeeec-CCCCcccCHHHHHHHHHHHHhhhc
Q 008119 156 HR-NTDIKELNSSE------RKFREFICGEEALRVSPTEPYCIHRPIRRGHLNIS-QHYPMQQVLEDLYAIWDWILTEKL 227 (577)
Q Consensus 156 ~~-~~~~~~~~~~~------~~~~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~-~~~s~~~~~~d~e~i~~~~~~~~L 227 (577)
.+ +.-+.+|...+ ....+..+|++|..+ .+|.|++||++|.||++ +|+|+|+.++|+++||+|++.+.|
T Consensus 142 ps~~~a~~~wld~e~~~hv~v~c~kr~~~ee~n~i---~~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L 218 (618)
T KOG0797|consen 142 PSASEAVPDWLDSEDTSHVKVKCRKRIFGEEANKI---SPYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKL 218 (618)
T ss_pred CCCCcCCCCccccccchHHHHHHHHHHhhhhhhcC---CcceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhc
Confidence 33 22222222111 233455677777776 48999999999999997 777999999999999999999999
Q ss_pred CCCCCCCCccceEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeee
Q 008119 228 HIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVAL 307 (577)
Q Consensus 228 ~i~~~~~~~~~~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi 307 (577)
+|+++...+|+.|||+|+.|.++++++++.+||.+++|.++.++|+++||+||+|.+++||||||+++|+|+||+||.++
T Consensus 219 ~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~ 298 (618)
T KOG0797|consen 219 HIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSL 298 (618)
T ss_pred CCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcEEeccchhHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccc-hhccccCCCCCCCce
Q 008119 308 PNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVA-VVHSYEDGMPPGSHK 386 (577)
Q Consensus 308 ~~s~~~l~~GG~dit~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~-~~~~~~~~~p~~~~k 386 (577)
++++++|+|||+|||++|.++|++. .|| |+++++.+.+||.++++|||++|+++.+++.++. .|..+++..| +.|
T Consensus 299 ~ntri~L~YGGdDitr~f~~ll~rs-~FP-y~d~~v~~~~d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~--~~k 374 (618)
T KOG0797|consen 299 PNTRIILPYGGDDITRCFLWLLRRS-GFP-YQDCDVLAPIDWLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPP--TLK 374 (618)
T ss_pred cCceEEeccCCchHHHHHHHHHHhc-CCC-cccccccccccHHHHHHHHHHhccccHhhhhhhhhhhhccCCCCc--cee
Confidence 9999999999999999999999875 466 5889998899999999999999999987665432 2333343334 566
Q ss_pred eEee---eeccCCCcccCCcccCCCC--------CCCCCCCCCCCcccccCCCcccccC-C-----------------Cc
Q 008119 387 TRLI---ALNVPPMGLFYPKLLVPDV--------YPPPPRSWFNDYEDMLEDTWHTDFP-R-----------------RS 437 (577)
Q Consensus 387 ~~~~---~~~~aP~~lF~p~i~~~e~--------~~~p~~~~~~~~ed~~~d~~~~~~~-e-----------------r~ 437 (577)
|+|+ ++++|||+||+|.+|..+. +.+|.+-++.|++-++.+++....+ + |-
T Consensus 375 ytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~ 454 (618)
T KOG0797|consen 375 YTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRD 454 (618)
T ss_pred eeeeccchhhccchhhhhhhhhhccccccccccccCCCCcccccchhhhhhhcccccccccccccccccccccccccccc
Confidence 7765 5789999999999997665 2333333333333222222222111 0 00
Q ss_pred CCCCCCCCCcCCCCC------CCCCCCccC-----------CCCCCccCCCHHHHHHHHHhcCCChhhHHHhhcCeEEec
Q 008119 438 DISDNFYPGINVGLP------MWESYPVLT-----------TKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIG 500 (577)
Q Consensus 438 ~~~E~lfp~~~~~~~------~~~~~~~~~-----------~~~~~~~~~gL~eaI~~SI~~c~~~d~r~~L~~NIvLvG 500 (577)
..+|..-.+..|.++ ...++.... ...+..-..+|+++|+.||..|...|.+++||++|+++|
T Consensus 455 ~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vg 534 (618)
T KOG0797|consen 455 QLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVG 534 (618)
T ss_pred cccccccchhhccccccccCCchhhhhhhhhhhhhhcccceeccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhc
Confidence 011111000000000 000000000 000111234788999999999988999999999999999
Q ss_pred CCcCCCChHHHHHHHHHhhCCC-CCcceEEE-------------------EeeecCCCCceeEeHHHHhhcCCCceeccc
Q 008119 501 GVALTGGLIPAVEERVLHAIPS-NEAIDMVE-------------------VLGILDFGRDAWIHREDWIRNGIHIGSGRK 560 (577)
Q Consensus 501 G~S~ipG~~~RLe~eL~~~~P~-~~~v~~v~-------------------vlasL~sf~~~wItr~EYeE~G~~il~rk~ 560 (577)
|+.++|||.+.||+++...+|+ +..+..|+ |||.|++.+++||++.||+.+|.+++..||
T Consensus 535 ga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~ 614 (618)
T KOG0797|consen 535 GAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKK 614 (618)
T ss_pred ccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhhhhcc
Confidence 9999999999999999988877 22233332 389999999999999999999999999999
Q ss_pred c
Q 008119 561 Y 561 (577)
Q Consensus 561 ~ 561 (577)
+
T Consensus 615 ~ 615 (618)
T KOG0797|consen 615 Y 615 (618)
T ss_pred c
Confidence 7
No 2
>PTZ00452 actin; Provisional
Probab=100.00 E-value=1.4e-65 Score=545.70 Aligned_cols=310 Identities=21% Similarity=0.355 Sum_probs=264.8
Q ss_pred CceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHH
Q 008119 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~ 251 (577)
+++++|++|... +..+.|++||++|.+. |||++|.||+|+|.+.|+++++++ +||+++++++++.
T Consensus 50 ~~~~iG~~~~~~--~~~~~l~~Pi~~G~I~---------dwd~~e~iw~~~f~~~l~v~p~~~----pvlitE~~~~~~~ 114 (375)
T PTZ00452 50 KEYYVGEEAQAK--RGVLAIKEPIQNGIIN---------SWDDIEIIWHHAFYNELCMSPEDQ----PVFMTDAPMNSKF 114 (375)
T ss_pred cceEEChhhhcc--ccCcEEcccCcCCEEc---------CHHHHHHHHHHHHHhhcCCCcccC----ceeeecCCCCCHH
Confidence 357899999763 4679999999999998 999999999999999999999998 8999999998887
Q ss_pred HHH-HHHHHHhhcCCceEEecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHH
Q 008119 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 252 ~r~-l~ellfE~~~~~~v~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~ 330 (577)
.|+ ++|+|||.|++|+++++.+++||+|++|++||||||+|++.|+|+||+||+++.+++.++++||+++|++|.++|+
T Consensus 115 ~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~ 194 (375)
T PTZ00452 115 NRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQ 194 (375)
T ss_pred HHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHH
Confidence 776 9999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCCCceeEeeeeccCCCcccCCcccCCCCC
Q 008119 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (577)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~p~i~~~e~~ 410 (577)
.++. ++....+..+++++||++|+++.+..+ ..+.+.. .. ..
T Consensus 195 ~~~~-------~~~~~~~~~~~~~iKe~~c~v~~d~~~---e~~~~~~-~~-~~-------------------------- 236 (375)
T PTZ00452 195 ELGY-------SLTEPHQRIIVKNIKERLCYTALDPQD---EKRIYKE-SN-SQ-------------------------- 236 (375)
T ss_pred hcCC-------CCCCHHHHHHHHHHHHHhccccCcHHH---HHHHhhc-cC-Cc--------------------------
Confidence 6652 454456788999999999999863110 0110000 00 00
Q ss_pred CCCCCCCCCCcccccCCCcccccC-CCcCCCCCCC-CCcCCCCCCCCCCCccCCCCCCccCCCHHHHHHHHHhcCCChhh
Q 008119 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDL 488 (577)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~d~ 488 (577)
. ..| .++|+..+.++ +|+.++|.|| |...| .+..||+++|.+||.+| |.|+
T Consensus 237 ---~----~~y--~LPDg~~i~l~~er~~~~E~LF~P~~~g-----------------~~~~gi~~~i~~si~~c-~~d~ 289 (375)
T PTZ00452 237 ---D----SPY--KLPDGNILTIKSQKFRCSEILFQPKLIG-----------------LEVAGIHHLAYSSIKKC-DLDL 289 (375)
T ss_pred ---C----ceE--ECCCCCEEEeehHHhcCcccccChhhcC-----------------CCCCChhHHHHHHHHhC-CHhH
Confidence 0 012 25567777776 8999999999 44333 35679999999999999 9999
Q ss_pred HHHhhcCeEEecCCcCCCChHHHHHHHHHhhCCCCCcceEEE-------------EeeecCCCCceeEeHHHHhhcCCCc
Q 008119 489 QRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVE-------------VLGILDFGRDAWIHREDWIRNGIHI 555 (577)
Q Consensus 489 r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~P~~~~v~~v~-------------vlasL~sf~~~wItr~EYeE~G~~i 555 (577)
|++||+||+|+||+|+||||.+||++||+.++|+..++++++ +||+|++|+++||||+||+|+|.++
T Consensus 290 r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i 369 (375)
T PTZ00452 290 RQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSI 369 (375)
T ss_pred HHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcce
Confidence 999999999999999999999999999999999877776542 2899999999999999999999999
Q ss_pred eecccc
Q 008119 556 GSGRKY 561 (577)
Q Consensus 556 l~rk~~ 561 (577)
++||||
T Consensus 370 ~~~k~~ 375 (375)
T PTZ00452 370 VHRKCF 375 (375)
T ss_pred eeeecC
Confidence 999997
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=8e-65 Score=540.60 Aligned_cols=308 Identities=19% Similarity=0.355 Sum_probs=262.2
Q ss_pred CceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHH
Q 008119 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~ 251 (577)
++++||++|... +..+.++|||++|.+. ||+++|.||+|+| +.|+++++++ +||+++++++++.
T Consensus 57 ~~~~vG~~~~~~--~~~~~l~~Pi~~G~v~---------dwd~~e~iw~~~f-~~l~v~~~~~----pvllte~~~~~~~ 120 (380)
T PTZ00466 57 GNIFVGNKAEEY--RGLLKVTYPINHGIIE---------NWNDMENIWIHVY-NSMKINSEEH----PVLLTEAPLNPQK 120 (380)
T ss_pred CCeEECchhhhh--CcCceeCccccCCeEC---------CHHHHHHHHHHHH-hhcccCCccC----eEEEecCccccHH
Confidence 357899999764 3578899999999998 9999999999999 7899998888 8999999999888
Q ss_pred HHH-HHHHHHhhcCCceEEecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHH
Q 008119 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 252 ~r~-l~ellfE~~~~~~v~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~ 330 (577)
.|+ ++|+|||+|++|+++++.+++||+||+|++||||||+|++.|+|+||+||+++.+++.++++||+++|++|.++|+
T Consensus 121 ~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~ 200 (380)
T PTZ00466 121 NKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLR 200 (380)
T ss_pred HHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHH
Confidence 776 9999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCCCceeEeeeeccCCCcccCCcccCCCCC
Q 008119 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (577)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~p~i~~~e~~ 410 (577)
.++. .+....+..+++++||++|+|+.+.... ..... .+...
T Consensus 201 ~~~~-------~~~~~~~~~~v~~iKe~~c~v~~d~~~e---~~~~~--~~~~~-------------------------- 242 (380)
T PTZ00466 201 KNGH-------LFNTSAEMEVVKNMKENCCYVSFNMNKE---KNSSE--KALTT-------------------------- 242 (380)
T ss_pred hcCC-------CCCcHHHHHHHHHHHHhCeEecCChHHH---Hhhcc--ccccc--------------------------
Confidence 6653 2344567889999999999998631100 00000 00000
Q ss_pred CCCCCCCCCCcccccCCCcccccC-CCcCCCCCCC-CCcCCCCCCCCCCCccCCCCCCccCCCHHHHHHHHHhcCCChhh
Q 008119 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDL 488 (577)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~d~ 488 (577)
..| .++|+..+.++ +|+.+||.|| |+..| .+..||+++|.+||.+| |.|.
T Consensus 243 --------~~y--~LPdg~~i~l~~er~~~~E~LF~P~~~g-----------------~~~~gl~~~i~~sI~~c-~~d~ 294 (380)
T PTZ00466 243 --------LPY--ILPDGSQILIGSERYRAPEVLFNPSILG-----------------LEYLGLSELIVTSITRA-DMDL 294 (380)
T ss_pred --------eeE--ECCCCcEEEEchHHhcCcccccCccccC-----------------CCCCCHHHHHHHHHHhC-Chhh
Confidence 011 24566667776 8999999999 44433 46679999999999999 9999
Q ss_pred HHHhhcCeEEecCCcCCCChHHHHHHHHHhhCCCCCcceEEE-------------EeeecCCCCceeEeHHHHhhcCCCc
Q 008119 489 QRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVE-------------VLGILDFGRDAWIHREDWIRNGIHI 555 (577)
Q Consensus 489 r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~P~~~~v~~v~-------------vlasL~sf~~~wItr~EYeE~G~~i 555 (577)
|+.||+||+|+||+|++|||.+||++||+.+.|...++++++ +||++++|+++||||+||+|+|.++
T Consensus 295 r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~i 374 (380)
T PTZ00466 295 RRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVI 374 (380)
T ss_pred HHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHh
Confidence 999999999999999999999999999999999877666432 2899999999999999999999999
Q ss_pred eecccc
Q 008119 556 GSGRKY 561 (577)
Q Consensus 556 l~rk~~ 561 (577)
++||||
T Consensus 375 v~rk~~ 380 (380)
T PTZ00466 375 LHRKTF 380 (380)
T ss_pred heeecC
Confidence 999997
No 4
>PTZ00281 actin; Provisional
Probab=100.00 E-value=1.2e-63 Score=531.91 Aligned_cols=310 Identities=18% Similarity=0.339 Sum_probs=263.4
Q ss_pred CceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHH
Q 008119 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~ 251 (577)
+++++|++|+.. +..+.+++||++|.+. ||++++.||+|+|.+.|+++++++ +||+++++++++.
T Consensus 51 ~~~~~g~~~~~~--~~~~~l~~Pi~~G~i~---------dwd~~e~l~~~~f~~~l~v~p~~~----pvllte~~~~~~~ 115 (376)
T PTZ00281 51 KDSYVGDEAQSK--RGILTLKYPIEHGIVT---------NWDDMEKIWHHTFYNELRVAPEEH----PVLLTEAPLNPKA 115 (376)
T ss_pred CCeEECchhhcc--ccCcEEeccCcCCEEc---------CHHHHHHHHHHHHHhhccCCCccC----eEEEecCCCCcHH
Confidence 357899998753 4679999999999998 999999999999988999999988 8999999999888
Q ss_pred HHH-HHHHHHhhcCCceEEecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHH
Q 008119 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 252 ~r~-l~ellfE~~~~~~v~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~ 330 (577)
.|+ |+|+|||.|++|+++++.++++|+|++|++||||||+|++.|+|+||+||+++.+++.++++||++||++|.++|.
T Consensus 116 ~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~ 195 (376)
T PTZ00281 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILT 195 (376)
T ss_pred HHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHH
Confidence 776 9999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCCCceeEeeeeccCCCcccCCcccCCCCC
Q 008119 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (577)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~p~i~~~e~~ 410 (577)
.++. ++.+..+..++++|||++|+|+.+... ...... .+... .
T Consensus 196 ~~~~-------~~~~~~~~~~~~~iKe~~c~v~~d~~~---~~~~~~--~~~~~-----~-------------------- 238 (376)
T PTZ00281 196 ERGY-------SFTTTAEREIVRDIKEKLAYVALDFEA---EMQTAA--SSSAL-----E-------------------- 238 (376)
T ss_pred hcCC-------CCCcHHHHHHHHHHHHhcEEecCCchH---HHHhhh--cCccc-----c--------------------
Confidence 6642 344456789999999999999853110 000000 00000 0
Q ss_pred CCCCCCCCCCcccccCCCcccccC-CCcCCCCCCCC-CcCCCCCCCCCCCccCCCCCCccCCCHHHHHHHHHhcCCChhh
Q 008119 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYP-GINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDL 488 (577)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-er~~~~E~lfp-~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~d~ 488 (577)
..| .++|+..+.++ +|+.++|.||. ...+ .+..||+++|.+||.+| |.|+
T Consensus 239 --------~~y--~LPdg~~i~i~~er~~~~E~LF~P~~~~-----------------~~~~gi~~~i~~sI~~~-~~d~ 290 (376)
T PTZ00281 239 --------KSY--ELPDGQVITIGNERFRCPEALFQPSFLG-----------------MESAGIHETTYNSIMKC-DVDI 290 (376)
T ss_pred --------eeE--ECCCCCEEEeeHHHeeCcccccChhhcC-----------------CCCCCHHHHHHHHHHhC-ChhH
Confidence 011 24566667776 89999999994 4332 35679999999999999 9999
Q ss_pred HHHhhcCeEEecCCcCCCChHHHHHHHHHhhCCCCCcceEEE-------------EeeecCCCCceeEeHHHHhhcCCCc
Q 008119 489 QRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVE-------------VLGILDFGRDAWIHREDWIRNGIHI 555 (577)
Q Consensus 489 r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~P~~~~v~~v~-------------vlasL~sf~~~wItr~EYeE~G~~i 555 (577)
|+.||+||+|+||+|+||||.+||++||+.+.|...++++++ +||++++|+++||||+||+|+|.++
T Consensus 291 r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~ 370 (376)
T PTZ00281 291 RKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSI 370 (376)
T ss_pred HHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCcccHhhceeeHHHHhhhCchh
Confidence 999999999999999999999999999999999877776542 2899999999999999999999999
Q ss_pred eecccc
Q 008119 556 GSGRKY 561 (577)
Q Consensus 556 l~rk~~ 561 (577)
++||||
T Consensus 371 ~~~k~~ 376 (376)
T PTZ00281 371 VHRKCF 376 (376)
T ss_pred eeeecC
Confidence 999997
No 5
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=2.5e-64 Score=522.47 Aligned_cols=305 Identities=23% Similarity=0.406 Sum_probs=262.0
Q ss_pred CceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHH
Q 008119 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~ 251 (577)
++.+||++|.... .|+|||+||.++ ||++|+.||+|+|++.|++.|.++ |||+++++++++.
T Consensus 52 ~~~~vg~~a~~~~-----~l~~Pie~Giv~---------~wd~me~iw~~if~~~L~~~Pee~----pvllte~pl~p~~ 113 (372)
T KOG0676|consen 52 KDTYVGDEAESKR-----TLKYPIERGIVT---------DWDDMEKIWHHLFYSELLVAPEEH----PVLLTEPPLNPKA 113 (372)
T ss_pred cccccchhhhccc-----cccCcccccccc---------chHHHHHHHHHHHHHhhccCcccC----ceEeecCCCCchH
Confidence 5677899999752 889999999998 999999999999999999999998 8999999999999
Q ss_pred HHH-HHHHHHhhcCCceEEecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHH
Q 008119 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 252 ~r~-l~ellfE~~~~~~v~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~ 330 (577)
.|| |+|++||.|++|++++..++++ |++|++||||||+|++.|+++||+||+++++++.++++||+|+|++|...|.
T Consensus 114 nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~ 191 (372)
T KOG0676|consen 114 NREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLR 191 (372)
T ss_pred hHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCceeeeecccccccchhhheecccchhhHHHHHHHHH
Confidence 887 9999999999999999777766 9999999999999999999999999999999999999999999999998887
Q ss_pred hcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCCCceeEeeeeccCCCcccCCcccCCCCC
Q 008119 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (577)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~p~i~~~e~~ 410 (577)
+.+ +++....+.++++++||++||++.+ . +.+... ..+. . .+
T Consensus 192 ~~g-------~s~~~~~~~eIv~diKeklCyvald-~---------~~e~~~-~~~~--~-------------~l----- 233 (372)
T KOG0676|consen 192 KRG-------YSFTTSAEFEIVRDIKEKLCYVALD-F---------EEEEET-ANTS--S-------------SL----- 233 (372)
T ss_pred hcc-------cccccccHHHHHHHhHhhhcccccc-c---------chhhhc-cccc--c-------------cc-----
Confidence 755 2566677889999999999999862 2 111110 0000 0 00
Q ss_pred CCCCCCCCCCcccccCCCcccccC-CCcCCCCCCCC-CcCCCCCCCCCCCccCCCCCCccCCCHHHHHHHHHhcCCChhh
Q 008119 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYP-GINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDL 488 (577)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-er~~~~E~lfp-~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~d~ 488 (577)
-.+|+ ++|+..+.++ +|+.++|.+|+ +..| .+..||++++.+||.+| +.|+
T Consensus 234 -------~~~y~--lPDg~~i~i~~erf~~pE~lFqP~~~g-----------------~e~~gi~~~~~~sI~kc-d~dl 286 (372)
T KOG0676|consen 234 -------ESSYE--LPDGQKITIGNERFRCPEVLFQPSLLG-----------------MESPGIHELTVNSIMKC-DIDL 286 (372)
T ss_pred -------ccccc--CCCCCEEecCCcccccchhcCChhhcC-----------------CCCCchhHHHHHHHHhC-ChhH
Confidence 01233 4466666665 89999999994 4444 57889999999999999 9999
Q ss_pred HHHhhcCeEEecCCcCCCChHHHHHHHHHhhCCCCCcceEEE-------------EeeecCCCCceeEeHHHHhhcCCCc
Q 008119 489 QRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVE-------------VLGILDFGRDAWIHREDWIRNGIHI 555 (577)
Q Consensus 489 r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~P~~~~v~~v~-------------vlasL~sf~~~wItr~EYeE~G~~i 555 (577)
|++||+||+|+||++++|||.+||++||+.+.|...++++++ +||||++|+++||||+||+|.|.++
T Consensus 287 rk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~ 366 (372)
T KOG0676|consen 287 RKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSI 366 (372)
T ss_pred hHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccceecCceeEeecchHhhccccHHHHhhhCCce
Confidence 999999999999999999999999999999999887776543 3999999999999999999999999
Q ss_pred eecccc
Q 008119 556 GSGRKY 561 (577)
Q Consensus 556 l~rk~~ 561 (577)
++||||
T Consensus 367 ~~rk~f 372 (372)
T KOG0676|consen 367 IHRKCF 372 (372)
T ss_pred eeeccC
Confidence 999998
No 6
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=3.5e-62 Score=521.08 Aligned_cols=311 Identities=20% Similarity=0.351 Sum_probs=261.1
Q ss_pred CceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHH
Q 008119 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~ 251 (577)
+.+++|++|... +..+.+++||++|.+. ||++++.||+|+|.++|++++.++ +||+++++++++.
T Consensus 51 ~~~~~g~~~~~~--~~~~~l~~Pi~~G~i~---------d~d~~e~i~~~~~~~~l~v~~~~~----pvllte~~~~~~~ 115 (378)
T PTZ00004 51 KDCYVGDEAQDK--RGILTLKYPIEHGIVT---------NWDDMEKIWHHTFYNELRVAPEEH----PVLLTEAPLNPKA 115 (378)
T ss_pred CceEECchhhcc--cccceEcccCcCCEEc---------CHHHHHHHHHHHHHhhcccCCccC----cceeecCCCCcHH
Confidence 357899998754 3568999999999998 999999999999988999988888 7999999998877
Q ss_pred HHH-HHHHHHhhcCCceEEecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHH
Q 008119 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 252 ~r~-l~ellfE~~~~~~v~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~ 330 (577)
.|+ ++++|||.|++++++++.+++||+|++|++||||||+|++.|+|+||+||+++.+++.++++||+++|++|.++|+
T Consensus 116 ~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~ 195 (378)
T PTZ00004 116 NREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILH 195 (378)
T ss_pred HHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHH
Confidence 775 9999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCCCceeEeeeeccCCCcccCCcccCCCCC
Q 008119 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (577)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~p~i~~~e~~ 410 (577)
.++. .+....+..+++++||++|+|+.+-. . ...... ..+. . +.
T Consensus 196 ~~~~-------~~~~~~~~~~~~~iKe~~c~v~~d~~-~--~~~~~~-~~~~-~----~~-------------------- 239 (378)
T PTZ00004 196 ERGT-------TFTTTAEKEIVRDIKEKLCYIALDFD-E--EMGNSA-GSSD-K----YE-------------------- 239 (378)
T ss_pred hcCC-------CCCcHHHHHHHHHHhhcceeecCCHH-H--HHhhhh-cCcc-c----cc--------------------
Confidence 6642 34444577899999999999975311 0 000000 0000 0 00
Q ss_pred CCCCCCCCCCcccccCCCcccccC-CCcCCCCCCCCC-cCCCCCCCCCCCccCCCCCCcc-CCCHHHHHHHHHhcCCChh
Q 008119 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPG-INVGLPMWESYPVLTTKPKKEE-KIGLAEAVTSSILSTGRID 487 (577)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-er~~~~E~lfp~-~~~~~~~~~~~~~~~~~~~~~~-~~gL~eaI~~SI~~c~~~d 487 (577)
..| .++|+..+.++ +|+.++|.||.+ ..+ .+ ..||+++|.+||.+| |.|
T Consensus 240 --------~~y--~lPdg~~i~l~~er~~~~E~LF~P~~~~-----------------~~~~~gi~~~i~~sI~~~-~~d 291 (378)
T PTZ00004 240 --------ESY--ELPDGTIITVGSERFRCPEALFQPSLIG-----------------KEEPPGIHELTFQSINKC-DID 291 (378)
T ss_pred --------eEE--ECCCCCEEEEcHHHeeCcccccChhhcC-----------------ccccCChHHHHHHHHHhC-Chh
Confidence 011 24566667776 899999999944 332 23 679999999999999 999
Q ss_pred hHHHhhcCeEEecCCcCCCChHHHHHHHHHhhCCCCCcceEEE-------------EeeecCCCCceeEeHHHHhhcCCC
Q 008119 488 LQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVE-------------VLGILDFGRDAWIHREDWIRNGIH 554 (577)
Q Consensus 488 ~r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~P~~~~v~~v~-------------vlasL~sf~~~wItr~EYeE~G~~ 554 (577)
+|+.|++||+|+||+|++|||.+||++||+.++|...++++++ ++|++++|+++||||+||+|+|.+
T Consensus 292 ~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~ 371 (378)
T PTZ00004 292 IRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPS 371 (378)
T ss_pred HHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccCccchhhhEeEHHHHhhhCcc
Confidence 9999999999999999999999999999999999887666432 289999999999999999999999
Q ss_pred ceecccc
Q 008119 555 IGSGRKY 561 (577)
Q Consensus 555 il~rk~~ 561 (577)
+++||||
T Consensus 372 ~~~rk~~ 378 (378)
T PTZ00004 372 IVHRKCF 378 (378)
T ss_pred eEEeecC
Confidence 9999997
No 7
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=9.3e-62 Score=489.79 Aligned_cols=340 Identities=20% Similarity=0.324 Sum_probs=260.6
Q ss_pred CceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHH
Q 008119 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~ 251 (577)
+.+|||++|+..+ ++++.+..||++|++. |||.++.+|+|+|.++|.++|.+| |+|++++++|+++
T Consensus 55 ~~~y~~~~ai~~p-r~gmEv~~~i~nGlv~---------dWD~~~~~w~~~~~~~Lk~~p~eh----P~litEp~wN~~~ 120 (426)
T KOG0679|consen 55 KGYYVDENAIHVP-RPGMEVKTPIKNGLVE---------DWDLFEMQWRYAYKNQLKVNPEEH----PVLITEPPWNTRA 120 (426)
T ss_pred cceEeechhccCC-CCCCeeccchhcCCcc---------cHHHHHHHHHHHHhhhhhcCcccc----ceeeecCCCCcHH
Confidence 4589999999886 6889999999999998 999999999999999999999998 8999999999999
Q ss_pred HHH-HHHHHHhhcCCceEEecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHH
Q 008119 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 252 ~r~-l~ellfE~~~~~~v~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~ 330 (577)
+|+ ++|++||+++||++|++.+++|++|+.|++||||||||+..|+|+||+||+++.+++++.++||+.|+..+.++|+
T Consensus 121 ~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~ 200 (426)
T KOG0679|consen 121 NREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLE 200 (426)
T ss_pred HHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCCceeeeeecceEeeeeeEecccchHHHHHHHHHHHh
Confidence 986 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCC--CCCcc--------cccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCCCceeEeeeeccCCCccc
Q 008119 331 HHQT--WPQIR--------TDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLF 400 (577)
Q Consensus 331 ~~~~--~p~~~--------~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF 400 (577)
..+. .|.|. .....+..-....+++++.+|+.....+ ...++ ..+. ..+..-|
T Consensus 201 ~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~v--~~e~k------------e~v~---qv~dtp~ 263 (426)
T KOG0679|consen 201 PKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQRV--YQEFK------------ESVL---QVSDTPF 263 (426)
T ss_pred hcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHHHH--HHHHH------------HHHH---hccCCCC
Confidence 6632 23221 0000000011223344444444332110 00000 0000 0001111
Q ss_pred CCcccCCCCC-CCCCCCCCCCcccccCCCcccccC-CCcCCCCCCC-CCcCCCCCCCCCCCccCCCCCCccCCCHHHHHH
Q 008119 401 YPKLLVPDVY-PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVT 477 (577)
Q Consensus 401 ~p~i~~~e~~-~~p~~~~~~~~ed~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~ 477 (577)
+. +.. ..|+.+ ..+++++...++ +|+++||.|| |+...+++.....+ .......|+.+++.
T Consensus 264 de-----~~~~~i~~~~------~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~-----~~~n~~lG~~~lv~ 327 (426)
T KOG0679|consen 264 DE-----EVAAQIPTKH------FEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGAT-----SHINTMLGLPHLVY 327 (426)
T ss_pred cc-----cccccCCCcc------ccCCCCcccccCcceeecchhhcCcchhccccccccCC-----CCCccccCchHHHH
Confidence 11 111 011111 246788888888 8999999999 55433221111110 01134679999999
Q ss_pred HHHhcCCChhhHHHhhcCeEEecCCcCCCChHHHHHHHHHhhCCCCCcceEEEE----------------eeecCCCCce
Q 008119 478 SSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEV----------------LGILDFGRDA 541 (577)
Q Consensus 478 ~SI~~c~~~d~r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~P~~~~v~~v~v----------------lasL~sf~~~ 541 (577)
.||..| |.|+|+.||+||||+||+|+|+||.+||++||..+.|.+ ++++++. ||||++|++|
T Consensus 328 sSi~~c-DvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASLgtFqq~ 405 (426)
T KOG0679|consen 328 SSINMC-DVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASLGTFQQL 405 (426)
T ss_pred hhhccC-hHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhccccHHHH
Confidence 999999 999999999999999999999999999999999999988 8876642 9999999999
Q ss_pred eEeHHHHhhcCC-Cceeccc
Q 008119 542 WIHREDWIRNGI-HIGSGRK 560 (577)
Q Consensus 542 wItr~EYeE~G~-~il~rk~ 560 (577)
||||+||||.|. +.+.|||
T Consensus 406 WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 406 WISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred hhhHHHHHHhhhHHHHhhcC
Confidence 999999999999 8888887
No 8
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=3.1e-60 Score=512.03 Aligned_cols=315 Identities=22% Similarity=0.318 Sum_probs=254.6
Q ss_pred CceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHH
Q 008119 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~ 251 (577)
.++++|++|+... ..+.+++||++|.+. ||+++|.||+|+|.+.|++++.++ ++|++++++++..
T Consensus 52 ~~~~vG~ea~~~~--~~~~l~~Pi~~G~I~---------dwd~~e~l~~~~~~~~L~~~p~~~----~vllte~~~~~~~ 116 (414)
T PTZ00280 52 LDFYIGDEALAAS--KSYTLTYPMKHGIVE---------DWDLMEKFWEQCIFKYLRCEPEEH----YFILTEPPMNPPE 116 (414)
T ss_pred CCEEEcchhhhCc--CCcEEecCccCCEeC---------CHHHHHHHHHHHHHHhhccCCCCC----ceEEeeCCCCcHH
Confidence 3578999998864 579999999999998 999999999999988999999888 7999999998877
Q ss_pred HHH-HHHHHHhhcCCceEEecchhhHHhhhc----------CCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhH
Q 008119 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGN----------GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGED 320 (577)
Q Consensus 252 ~r~-l~ellfE~~~~~~v~~~~~~vla~f~~----------G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~d 320 (577)
.|+ ++|+|||.|++|+++++.+++||+||+ |.++|||||+|++.|+|+||+||+++.+++.++++||++
T Consensus 117 ~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~ 196 (414)
T PTZ00280 117 NREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRD 196 (414)
T ss_pred HHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEEcccceEEecCcHHH
Confidence 776 999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCC-CceeEeeeeccCCCcc
Q 008119 321 ISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLIALNVPPMGL 399 (577)
Q Consensus 321 it~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~-~~k~~~~~~~~aP~~l 399 (577)
||++|.++|+.++. ++....+.++++++||++|++..+-. ...+.+.. .+.. ..++. .|..
T Consensus 197 lt~~L~~lL~~~~~-------~~~~~~~~~~~~~iKe~~c~v~~d~~---~e~~~~~~-~~~~~~~~~~------~~d~- 258 (414)
T PTZ00280 197 ITNFIQQMLRERGE-------PIPAEDILLLAQRIKEKYCYVAPDIA---KEFEKYDS-DPKNHFKKYT------AVNS- 258 (414)
T ss_pred HHHHHHHHHHHcCC-------CCCcHHHHHHHHHHHHhcCcccCcHH---HHHHHhhc-CcccccceEE------CCCC-
Confidence 99999999976642 23334567899999999999976311 11122211 0100 00111 1100
Q ss_pred cCCcccCCCCCCCCCCCCCCCcccccCCCcccccC-CCcCCCCCCC-CCcCCCCCCCCCCCccCCCCCCccCCCHHHHHH
Q 008119 400 FYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVT 477 (577)
Q Consensus 400 F~p~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~ 477 (577)
....+..+.++ +|+.++|.|| |...+. ....||+++|.
T Consensus 259 ------------------------~~g~~~~i~l~~erf~~~E~LF~P~~~~~----------------~~~~gl~e~i~ 298 (414)
T PTZ00280 259 ------------------------VTKKPYTVDVGYERFLGPEMFFHPEIFSS----------------EWTTPLPEVVD 298 (414)
T ss_pred ------------------------CCCCccEEEechHHhcCcccccChhhcCC----------------ccCCCHHHHHH
Confidence 00011234555 8999999999 433321 23459999999
Q ss_pred HHHhcCCChhhHHHhhcCeEEecCCcCCCChHHHHHHHHHhhCC----------------CCCcceEEE-----------
Q 008119 478 SSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIP----------------SNEAIDMVE----------- 530 (577)
Q Consensus 478 ~SI~~c~~~d~r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~P----------------~~~~v~~v~----------- 530 (577)
+||.+| |+|+|++||+||+|+||+|+||||.+||++||+.++| ...++++++
T Consensus 299 ~sI~~~-~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~G 377 (414)
T PTZ00280 299 DAIQSC-PIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYG 377 (414)
T ss_pred HHHHhC-ChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEC
Confidence 999999 8999999999999999999999999999999999874 344444332
Q ss_pred --EeeecCCCCceeEeHHHHhhcCCCceeccc
Q 008119 531 --VLGILDFGRDAWIHREDWIRNGIHIGSGRK 560 (577)
Q Consensus 531 --vlasL~sf~~~wItr~EYeE~G~~il~rk~ 560 (577)
+||++++|+++||||+||+|+|.++++|+.
T Consensus 378 gSilas~~~f~~~~itk~eY~E~G~~i~~~~~ 409 (414)
T PTZ00280 378 GSMLASSPEFEKVCHTKAEYDEYGPSICRYNN 409 (414)
T ss_pred hhhcccCcchhhheEEHHHHhccChHheeecc
Confidence 289999999999999999999999999873
No 9
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=1.8e-59 Score=502.77 Aligned_cols=322 Identities=25% Similarity=0.399 Sum_probs=248.9
Q ss_pred ceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHHH
Q 008119 173 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREI 252 (577)
Q Consensus 173 ~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~~ 252 (577)
++++|++++. ....+.+++|+++|.+. ||++++.||+|+|.+.|+++++++ +||++++++.++..
T Consensus 45 ~~~~g~~~~~--~~~~~~~~~p~~~g~i~---------~~~~~e~i~~~~~~~~l~~~~~~~----~vll~~~~~~~~~~ 109 (393)
T PF00022_consen 45 DYYVGDEALS--PRSNLELRSPIENGVIV---------DWDALEEIWDYIFSNLLKVDPSDH----PVLLTEPPFNPRSQ 109 (393)
T ss_dssp SCEETHHHHH--TGTGEEEEESEETTEES---------SHHHHHHHHHHHHHTTT-SSGGGS----EEEEEESTT--HHH
T ss_pred eEEeeccccc--chhheeeeeeccccccc---------cccccccccccccccccccccccc----eeeeeccccCCchh
Confidence 4678888665 25689999999999998 999999999999988899988887 79999998887776
Q ss_pred HH-HHHHHHhhcCCceEEecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHHh
Q 008119 253 KE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRH 331 (577)
Q Consensus 253 r~-l~ellfE~~~~~~v~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~~ 331 (577)
++ ++++|||+|+|++++++++++||+|++|.+||||||+|++.|+|+||+||+++.+++.++++||+++|++|.++|+.
T Consensus 110 r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~ 189 (393)
T PF00022_consen 110 REKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKE 189 (393)
T ss_dssp HHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccccceeeeeecccccccccccccccccccceeeeeeeeeeeccccccccccccccHHHHHHHHHHHHHh
Confidence 65 99999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCC--CCCcc--------cccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCCCceeEeeeeccCCCcccC
Q 008119 332 HQT--WPQIR--------TDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFY 401 (577)
Q Consensus 332 ~~~--~p~~~--------~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~ 401 (577)
++. .|.+. ...+....+..+++++|+++|+++.......... ....+ ...+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~---~~~~~--~~~~-------------- 250 (393)
T PF00022_consen 190 RNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQ---ASENP--EKSY-------------- 250 (393)
T ss_dssp T-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHH---HCSTT--TEEE--------------
T ss_pred hccccccccccccccccccccccchhhhccchhccchhhhcccccccccccc---ccccc--ceec--------------
Confidence 521 11111 1122334578899999999999997532100000 00001 0001
Q ss_pred CcccCCCCCCCCCCCCCCCcccccCCCcccccC-CCcCCCCCCCCCc-CCCCCCCCCCCccCCCCCCccCCCHHHHHHHH
Q 008119 402 PKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGI-NVGLPMWESYPVLTTKPKKEEKIGLAEAVTSS 479 (577)
Q Consensus 402 p~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-er~~~~E~lfp~~-~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~S 479 (577)
.++|+..+.++ +|+.++|.||.+. .+... ........||+++|.+|
T Consensus 251 ----------------------~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~----------~~~~~~~~gL~~~I~~s 298 (393)
T PF00022_consen 251 ----------------------ELPDGQTIILGKERFRIPEILFNPSLIGIDS----------ASEPSEFMGLPELILDS 298 (393)
T ss_dssp ----------------------E-TTSSEEEESTHHHHHHHTTTSGGGGTSSS----------TS---SSSCHHHHHHHH
T ss_pred ----------------------ccccccccccccccccccccccccccccccc----------cccccccchhhhhhhhh
Confidence 12344445554 6888899999443 22100 00002346999999999
Q ss_pred HhcCCChhhHHHhhcCeEEecCCcCCCChHHHHHHHHHhhCCCCCcceEEEE--------------eeecCCCCceeEeH
Q 008119 480 ILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEV--------------LGILDFGRDAWIHR 545 (577)
Q Consensus 480 I~~c~~~d~r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~P~~~~v~~v~v--------------lasL~sf~~~wItr 545 (577)
|.+| +.|.|++|++||+|+||+|++|||.+||++||..+.|...++++++. ||+|++|+++||||
T Consensus 299 i~~~-~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr 377 (393)
T PF00022_consen 299 ISKC-PIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITR 377 (393)
T ss_dssp HHTS-TTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEH
T ss_pred hhcc-ccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccccccceeeeH
Confidence 9999 89999999999999999999999999999999999998888776543 89999999999999
Q ss_pred HHHhhcCCCceecccc
Q 008119 546 EDWIRNGIHIGSGRKY 561 (577)
Q Consensus 546 ~EYeE~G~~il~rk~~ 561 (577)
+||+|+|+++++||||
T Consensus 378 ~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 378 EEYEEYGPSIIHRKCF 393 (393)
T ss_dssp HHHHHHGGGGHHHHT-
T ss_pred HHHhCcCcceeeecCC
Confidence 9999999999999997
No 10
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=5.2e-59 Score=447.55 Aligned_cols=306 Identities=24% Similarity=0.446 Sum_probs=256.2
Q ss_pred CceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHH
Q 008119 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~ 251 (577)
|++.|||||-.+ +.-+.+.|||++|.+. ||+||+.+|+|+|.++|+|+|++. -+|++++++++..
T Consensus 51 KD~mvGdeasel--Rs~L~i~YPmeNGivr---------nwddM~h~WDytF~ekl~idp~~~----KiLLTePPmNP~k 115 (389)
T KOG0677|consen 51 KDLMVGDEASEL--RSLLDINYPMENGIVR---------NWDDMEHVWDYTFGEKLKIDPTNC----KILLTEPPMNPTK 115 (389)
T ss_pred hhheccchHHHH--HHHHhcCCcccccccc---------ChHHHHHHHHhhhhhhccCCCccC----eEEeeCCCCCccc
Confidence 678999999876 3678899999999998 999999999999999999999988 5999999999988
Q ss_pred HHH-HHHHHHhhcCCceEEecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHH
Q 008119 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 252 ~r~-l~ellfE~~~~~~v~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~ 330 (577)
.|+ |+|++||++||.++|++.++|+++|+.|..||+|||+|.+.|+||||+||+++++-..|++++|+|+|.||.+||.
T Consensus 116 NREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl 195 (389)
T KOG0677|consen 116 NREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLL 195 (389)
T ss_pred cHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHHH
Confidence 886 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCCCceeEeeeeccCCCcccCCcccCCCCC
Q 008119 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (577)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~p~i~~~e~~ 410 (577)
.+| +.++...|++.++++||++||++-+ ++. +..+...+ +.+-
T Consensus 196 ~rG-------YafN~tADFETVR~iKEKLCYisYd-~e~-------e~kLalET--TvLv-------------------- 238 (389)
T KOG0677|consen 196 RRG-------YAFNHTADFETVREIKEKLCYISYD-LEL-------EQKLALET--TVLV-------------------- 238 (389)
T ss_pred hhc-------cccccccchHHHHHHHhhheeEeec-hhh-------hhHhhhhh--eeee--------------------
Confidence 876 3678889999999999999999742 110 00000000 0000
Q ss_pred CCCCCCCCCCcccccCCCcccccC-CCcCCCCCCC-CCcCCCCCCCCCCCccCCCCCCccCCCHHHHHHHHHhcCCChhh
Q 008119 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDL 488 (577)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~d~ 488 (577)
..| .++||..+..+ |||.+||.|| |..+. -+..|+.++++++|+.+ ++|.
T Consensus 239 --------~~Y--tLPDGRvIkvG~ERFeAPE~LFqP~Li~-----------------VE~~G~aellF~~iQaa-DiD~ 290 (389)
T KOG0677|consen 239 --------ESY--TLPDGRVIKVGGERFEAPEALFQPHLIN-----------------VEGPGVAELLFNTIQAA-DIDI 290 (389)
T ss_pred --------eee--ecCCCcEEEecceeccCchhhcCcceec-----------------cCCCcHHHHHHHHHHHh-ccch
Confidence 112 35577777776 8999999999 44433 36789999999999999 9999
Q ss_pred HHHhhcCeEEecCCcCCCChHHHHHHHHHhhC---------------------CCCCcceEE----EEeeec-CCCCcee
Q 008119 489 QRKLFCSIQLIGGVALTGGLIPAVEERVLHAI---------------------PSNEAIDMV----EVLGIL-DFGRDAW 542 (577)
Q Consensus 489 r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~---------------------P~~~~v~~v----~vlasL-~sf~~~w 542 (577)
|.+||..|+|+||+++.|||..||++||+++. |++-+ ..| +|||.+ ..-.++|
T Consensus 291 R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRK-hMVflGGAVLA~imkD~d~fW 369 (389)
T KOG0677|consen 291 RSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRK-HMVFLGGAVLAGIMKDKDEFW 369 (389)
T ss_pred HHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccc-eeEEEchHHHHHHhcCCccce
Confidence 99999999999999999999999999999863 11111 111 236654 4557899
Q ss_pred EeHHHHhhcCCCceec
Q 008119 543 IHREDWIRNGIHIGSG 558 (577)
Q Consensus 543 Itr~EYeE~G~~il~r 558 (577)
+||+||+|.|.+++.+
T Consensus 370 ~skqeyqE~G~~~l~k 385 (389)
T KOG0677|consen 370 MSKQEYQEEGINVLNK 385 (389)
T ss_pred ecHHHHHhhhHHHHHh
Confidence 9999999999988764
No 11
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=9.2e-57 Score=478.94 Aligned_cols=313 Identities=22% Similarity=0.391 Sum_probs=255.6
Q ss_pred CceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHH
Q 008119 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~ 251 (577)
+.+++|++|.... +.+.+++||++|.+. ||++++.||+|+|.+.|+++++++ +|+++++.+.+..
T Consensus 45 ~~~~~G~~a~~~~--~~~~~~~P~~~G~i~---------d~~~~e~i~~~~~~~~l~~~~~~~----~vll~~p~~~~~~ 109 (373)
T smart00268 45 KDTFVGDEAQEKR--GGLELKYPIEHGIVE---------NWDDMEKIWDYTFFNELRVEPEEH----PVLLTEPPMNPKS 109 (373)
T ss_pred cceEecchhhhcC--CCceecCCCcCCEEe---------CHHHHHHHHHHHHhhhcCCCCccC----eeEEecCCCCCHH
Confidence 3578999996543 456899999999998 999999999999988899988777 7889988887655
Q ss_pred HHH-HHHHHHhhcCCceEEecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHH
Q 008119 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 252 ~r~-l~ellfE~~~~~~v~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~ 330 (577)
.|+ ++++|||.|++++++++.+++||+||+|.++|||||+|++.|+|+||+||+++.+++.++++||+++|++|.++|+
T Consensus 110 ~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~ 189 (373)
T smart00268 110 NREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLS 189 (373)
T ss_pred HHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHH
Confidence 554 9999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCC-CCCCCceeEeeeeccCCCcccCCcccCCCC
Q 008119 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDG-MPPGSHKTRLIALNVPPMGLFYPKLLVPDV 409 (577)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~-~p~~~~k~~~~~~~~aP~~lF~p~i~~~e~ 409 (577)
..+. .+....+..+++++||++|+++....+ ........ .+... .
T Consensus 190 ~~~~-------~~~~~~~~~~~~~iKe~~~~v~~~~~~---~~~~~~~~~~~~~~-----~------------------- 235 (373)
T smart00268 190 ERGY-------QFNSSAEFEIVREIKEKLCYVAEDFEK---EMKKARESSESSKL-----E------------------- 235 (373)
T ss_pred hcCC-------CCCcHHHHHHHHHhhhheeeecCChHH---HHHHhhhccccccc-----c-------------------
Confidence 6431 222345778999999999999863211 00000000 00000 0
Q ss_pred CCCCCCCCCCCcccccCCCcccccC-CCcCCCCCCCCCcCCCCCCCCCCCccCCCCCCccCCCHHHHHHHHHhcCCChhh
Q 008119 410 YPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDL 488 (577)
Q Consensus 410 ~~~p~~~~~~~~ed~~~d~~~~~~~-er~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~d~ 488 (577)
..| .++|+..+.++ +|+.++|.||.+...+ .+..||+++|.++|.+| |.|+
T Consensus 236 ---------~~~--~lpdg~~~~~~~er~~~~E~lf~p~~~~----------------~~~~~i~~~i~~~i~~~-~~d~ 287 (373)
T smart00268 236 ---------KTY--ELPDGNTIKVGNERFRIPEILFKPELIG----------------LEQKGIHELVYESIQKC-DIDV 287 (373)
T ss_pred ---------eeE--ECCCCCEEEEChHHeeCchhcCCchhcC----------------CCcCCHHHHHHHHHHhC-CHhH
Confidence 001 13355555565 7999999999543221 35679999999999999 9999
Q ss_pred HHHhhcCeEEecCCcCCCChHHHHHHHHHhhCCCCCcceEEE-------------EeeecCCCCceeEeHHHHhhcCCCc
Q 008119 489 QRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVE-------------VLGILDFGRDAWIHREDWIRNGIHI 555 (577)
Q Consensus 489 r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~P~~~~v~~v~-------------vlasL~sf~~~wItr~EYeE~G~~i 555 (577)
|++|++||+|+||+|++|||.+||++||+.+.|...++++.. ++|++++|+++||||+||+|+|.++
T Consensus 288 r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i 367 (373)
T smart00268 288 RKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQI 367 (373)
T ss_pred HHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcce
Confidence 999999999999999999999999999999999776655432 2899999999999999999999999
Q ss_pred eecccc
Q 008119 556 GSGRKY 561 (577)
Q Consensus 556 l~rk~~ 561 (577)
++||||
T Consensus 368 ~~~k~~ 373 (373)
T smart00268 368 VERKCF 373 (373)
T ss_pred EEeecC
Confidence 999997
No 12
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=4.8e-55 Score=465.43 Aligned_cols=310 Identities=24% Similarity=0.392 Sum_probs=252.9
Q ss_pred CceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHH
Q 008119 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~ 251 (577)
+.++||++|..+.+. .+.+++|+++|.+. ||++++.+|+|+|.+.|.++++++ +|+++++.+.++.
T Consensus 44 ~~~~~G~~a~~~~~~-~~~~~~P~~~G~i~---------d~~~~e~~~~~~~~~~l~~~~~~~----~vvl~~p~~~~~~ 109 (371)
T cd00012 44 KDYFVGEEALEKRGL-GLELIYPIEHGIVV---------DWDDMEKIWDHLFFNELKVNPEEH----PVLLTEPPLNPKS 109 (371)
T ss_pred CceEEchhhhhCCCC-ceEEcccccCCEEe---------CHHHHHHHHHHHHHHhcCCCCCCC----ceEEecCCCCCHH
Confidence 467899999987643 69999999999998 999999999999988888887776 6888888877765
Q ss_pred HHH-HHHHHHhhcCCceEEecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHH
Q 008119 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 252 ~r~-l~ellfE~~~~~~v~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~ 330 (577)
.++ ++++|||.+++++++++.+++||+|++|.++|||||+|++.|+|+||+||+++.+++.++++||+++|++|.++|+
T Consensus 110 ~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~ 189 (371)
T cd00012 110 NREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLR 189 (371)
T ss_pred HHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHH
Confidence 555 9999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCCCceeEeeeeccCCCcccCCcccCCCCC
Q 008119 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (577)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~p~i~~~e~~ 410 (577)
.++. .+....+..+++++||++|+++.+.... ...... ..... .
T Consensus 190 ~~~~-------~~~~~~~~~~~~~iKe~~~~v~~~~~~~---~~~~~~-~~~~~-~------------------------ 233 (371)
T cd00012 190 ERGY-------ELNSSDEREIVRDIKEKLCYVALDIEEE---QDKSAK-ETSLL-E------------------------ 233 (371)
T ss_pred hcCC-------CccchhHHHHHHHHHHhheeecCCHHHH---HHhhhc-cCCcc-c------------------------
Confidence 6542 2344567899999999999998642110 000000 00000 0
Q ss_pred CCCCCCCCCCcccccCCCcccccC-CCcCCCCCCCCC-cCCCCCCCCCCCccCCCCCCccCCCHHHHHHHHHhcCCChhh
Q 008119 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPG-INVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDL 488 (577)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-er~~~~E~lfp~-~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~d~ 488 (577)
..| .++|+..+.++ +|+.++|.||.+ ..+ ....+|+++|.++|.+| +.|.
T Consensus 234 --------~~~--~lpd~~~i~~~~er~~~~E~lF~p~~~~-----------------~~~~~i~~~i~~~i~~~-~~~~ 285 (371)
T cd00012 234 --------KTY--ELPDGRTIKVGNERFRAPEILFNPSLIG-----------------SEQVGISEAIYSSINKC-DIDL 285 (371)
T ss_pred --------eeE--ECCCCeEEEEChHHhhChHhcCChhhcC-----------------CCcCCHHHHHHHHHHhC-CHhH
Confidence 001 13344555555 799999999953 322 35679999999999999 8999
Q ss_pred HHHhhcCeEEecCCcCCCChHHHHHHHHHhhCCC--CCcceEE-------------EEeeecCCCCceeEeHHHHhhcCC
Q 008119 489 QRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPS--NEAIDMV-------------EVLGILDFGRDAWIHREDWIRNGI 553 (577)
Q Consensus 489 r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~P~--~~~v~~v-------------~vlasL~sf~~~wItr~EYeE~G~ 553 (577)
|+.+++||+|+||+|++|||.+||++||..+.|. ...+... +++|++++|+++||||+||+|+|.
T Consensus 286 ~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~ 365 (371)
T cd00012 286 RKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGP 365 (371)
T ss_pred HHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCc
Confidence 9999999999999999999999999999999986 3222211 128999999999999999999999
Q ss_pred Cceecc
Q 008119 554 HIGSGR 559 (577)
Q Consensus 554 ~il~rk 559 (577)
++++||
T Consensus 366 ~~~~~k 371 (371)
T cd00012 366 SIVHRK 371 (371)
T ss_pred hhEecC
Confidence 999986
No 13
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=6.2e-54 Score=459.94 Aligned_cols=349 Identities=22% Similarity=0.340 Sum_probs=268.0
Q ss_pred CceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhh--hcCCCCCCCCccceEEecCCCCCh
Q 008119 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTE--KLHIPRSERNLYSAILVLPESFDN 249 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~--~L~i~~~~~~~~~~vlvi~~~~~~ 249 (577)
++.++|+++....+...+.+++|+++|.+. ||++++.+|+|+|.+ .+...+.++ +++++++++++
T Consensus 52 ~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~---------~W~~~e~~w~~~~~~~~~~~~~~~~~----pllltep~~n~ 118 (444)
T COG5277 52 KDTYVGNEAQNDRDNSLLELRYPIENGIIL---------NWDAMEQIWDYTFFNKGDLLPSPEEH----PLLLTEPPLNP 118 (444)
T ss_pred cccccCchhhhccCCccceeecccccCccC---------CcHHHHHHHHHhhcchhhccCCCcCC----ceEEeccCCCc
Confidence 456799999877655689999999999998 999999999999987 577778888 89999999998
Q ss_pred HHHHH-HHHHHHhhcCCceEEecchhhHHhhhcCCc--ceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHH
Q 008119 250 REIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLS--TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 326 (577)
Q Consensus 250 ~~~r~-l~ellfE~~~~~~v~~~~~~vla~f~~G~~--tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~ 326 (577)
...|+ +++++||.|+|+++++..+++|++|+.|.+ +|||||+|++.|+|+||+||+++.+++.++++||+++|.+|.
T Consensus 119 ~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~ 198 (444)
T COG5277 119 PSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLK 198 (444)
T ss_pred HHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcCCCceeeEeeeccccccccceeeecCcHHHHHHHH
Confidence 88886 999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccccccccc---chHHHHHHHHHHcccc-------cCCcccccchhccccCCCCCCCceeEeeeeccCC
Q 008119 327 WTQRHHQTWPQIRTDILTKA---MDLLMLNRIKESYCEI-------KEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPP 396 (577)
Q Consensus 327 ~lL~~~~~~p~~~~~~l~~~---~d~~l~e~LKe~~c~v-------~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP 396 (577)
++|..... +.+.+.+... .++++++.+|+++|.. ..+-. ...+... ..+ ..+.+
T Consensus 199 ~lL~~~~~--~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~~~~---~~~~e~~-~~~--~~~~~-------- 262 (444)
T COG5277 199 KLLREKYP--PSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDAE---EEFEEEE-EKP--AEKST-------- 262 (444)
T ss_pred HHHhhccc--ccCCcccccccccccHHHHHHHHHhhccccccccchhhcch---HHHHHHh-hhh--hhhcc--------
Confidence 99987532 3345566665 7899999999999944 32100 0011000 001 00000
Q ss_pred CcccCCcccCCCCCCCCCCCCCCCcccccCCCcccccC-C-CcCCCCCCCCCc--CCCCCCC------------CCCCcc
Q 008119 397 MGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-R-RSDISDNFYPGI--NVGLPMW------------ESYPVL 460 (577)
Q Consensus 397 ~~lF~p~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-e-r~~~~E~lfp~~--~~~~~~~------------~~~~~~ 460 (577)
...|.+.- +.. . ..-....+++..+.++ + ||.+||.+|.+. ..++... ... ..
T Consensus 263 ~~~~~~~~---~~~--~-----~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~~~~~~-~~ 331 (444)
T COG5277 263 ESTFQLSK---ETS--I-----AKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQELVAENY-EI 331 (444)
T ss_pred cccccccc---hhc--c-----ccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhhhhhhhcc-cc
Confidence 00000000 000 0 0000134456666665 6 999999999433 2221100 000 11
Q ss_pred CCCCCCccCCCHHHHHHHHHhcCCChhhHHHhhcCeEEecCCcCCCChHHHHHHHHHhhCCCCCcceEEE----------
Q 008119 461 TTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVE---------- 530 (577)
Q Consensus 461 ~~~~~~~~~~gL~eaI~~SI~~c~~~d~r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~P~~~~v~~v~---------- 530 (577)
.+.....+..||+++|.+||..| +.|.|+.||+||+|+||+|++|||.+||++||..+.|..+.++++.
T Consensus 332 ~~~~~~~~~~gl~e~v~~si~~~-~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~ 410 (444)
T COG5277 332 SPTNLGNDIAGLPELVYQSIQIC-DEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWL 410 (444)
T ss_pred ccccccccccchHHHHHHHHHhc-cHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhcccc
Confidence 12222356789999999999999 8999999999999999999999999999999999999876666543
Q ss_pred ---EeeecCCCCceeEeHHHHhhcCCCceecccc
Q 008119 531 ---VLGILDFGRDAWIHREDWIRNGIHIGSGRKY 561 (577)
Q Consensus 531 ---vlasL~sf~~~wItr~EYeE~G~~il~rk~~ 561 (577)
+||++++|+++||||+||+|+|++++.++||
T Consensus 411 GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 411 GASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred chhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 2899999999999999999999999999886
No 14
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=5.4e-53 Score=416.89 Aligned_cols=327 Identities=18% Similarity=0.248 Sum_probs=254.3
Q ss_pred eEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhh-cCCCCCCCCccceEEecCCCCChHHH
Q 008119 174 FICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEK-LHIPRSERNLYSAILVLPESFDNREI 252 (577)
Q Consensus 174 ~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~-L~i~~~~~~~~~~vlvi~~~~~~~~~ 252 (577)
.|+|++.-.+.+...+..++|+++|.+. +|+-...+|+|+|.+. ++++.+++ .++++++.++-..+
T Consensus 42 ~f~~nei~ec~D~ssL~y~rp~erGyLv---------nW~tq~~vWDy~f~~~~~~~~~~~~----~ivlTep~~~~psi 108 (400)
T KOG0680|consen 42 SFLANEIDECKDISSLFYRRPHERGYLV---------NWDTQSQVWDYCFGNPGFDVEGKDH----NIVLTEPCMTFPSI 108 (400)
T ss_pred hhhhhhhhhccCccceEEeehhhcceeE---------eehhHHHHHHHHhcCCCcCcccCcc----eEEEecccccccch
Confidence 3466666666655678889999999999 9999999999999532 33555666 69999999987777
Q ss_pred HH-HHHHHHhhcCCceEEecchhhHHhhhc---CC--------cceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhH
Q 008119 253 KE-MLSIVLRDLRFASAVVHQEGLAAVFGN---GL--------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGED 320 (577)
Q Consensus 253 r~-l~ellfE~~~~~~v~~~~~~vla~f~~---G~--------~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~d 320 (577)
.+ +.|+|||+|+|.+++-...+.+++|-. +. .+++|||+|++.|+|+||.+|++...+++|+++||+.
T Consensus 109 ~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~ 188 (400)
T KOG0680|consen 109 QEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKA 188 (400)
T ss_pred hhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhhceEEeecchHH
Confidence 76 999999999999999999999998872 21 2689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCCCceeEeeeeccCCCccc
Q 008119 321 ISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLF 400 (577)
Q Consensus 321 it~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF 400 (577)
||++|++.+..++ ++-+.+..+++++||.+|||+++ ....... .+. .+. ..|... .++.|. |
T Consensus 189 LTn~LKE~iSyR~---------lNvmdET~vVNeiKEdvcfVSqn-F~~~m~~-~~~--k~~-~~~~~i--~YvLPD--F 250 (400)
T KOG0680|consen 189 LTNLLKETISYRH---------LNVMDETYVVNEIKEDVCFVSQN-FKEDMDI-AKT--KFQ-ENKVMI--DYVLPD--F 250 (400)
T ss_pred HHHHHHHHhhhhh---------hcccchhhhhhhhhhheEEechh-hHHHHHH-Hhh--ccc-cceeEE--EEecCC--c
Confidence 9999999987653 33356789999999999999973 1000000 011 110 011111 123332 1
Q ss_pred CCccc---CCCCCCCCCCCCCCCcccccCCCcccccC-CCcCCCCCCC-CCcCCCCCCCCCCCccCCCCCCccCCCHHHH
Q 008119 401 YPKLL---VPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEA 475 (577)
Q Consensus 401 ~p~i~---~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-er~~~~E~lf-p~~~~~~~~~~~~~~~~~~~~~~~~~gL~ea 475 (577)
..... .++.. ....|.+.+.+. |||.+||.|| |+.++ ....||.+|
T Consensus 251 ~T~k~Gyvr~~~v------------k~~~d~qii~L~nErF~IPEilF~Psdi~-----------------I~q~GIpEA 301 (400)
T KOG0680|consen 251 STSKRGYVRNEDV------------KLPEDEQIITLTNERFTIPEILFSPSDIG-----------------IQQPGIPEA 301 (400)
T ss_pred ccccceeEecCCC------------CCCCCcceeeecccccccchhhcChhhcC-----------------cccCCchHH
Confidence 11000 00000 112245667775 9999999999 55444 578999999
Q ss_pred HHHHHhcCCChhhHHHhhcCeEEecCCcCCCChHHHHHHHHHhhCCCCCcceEEEE-------------eeecCCCCcee
Q 008119 476 VTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEV-------------LGILDFGRDAW 542 (577)
Q Consensus 476 I~~SI~~c~~~d~r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~P~~~~v~~v~v-------------lasL~sf~~~w 542 (577)
|.+||..| |.++|+.|+.||+++||+++||||.+||..||++++|..+.+.++.+ ++.+++|..+|
T Consensus 302 V~esl~~~-Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~ 380 (400)
T KOG0680|consen 302 VLESLSML-PEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGSEFAKTDSFEKAV 380 (400)
T ss_pred HHHHHHhC-HHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceeeehhccccccCcchhcce
Confidence 99999999 99999999999999999999999999999999999999988775432 78889999999
Q ss_pred EeHHHHhhcCCCceecccc
Q 008119 543 IHREDWIRNGIHIGSGRKY 561 (577)
Q Consensus 543 Itr~EYeE~G~~il~rk~~ 561 (577)
|||+||+|+|.+++.+|.|
T Consensus 381 itR~dy~E~G~~~~~~~~~ 399 (400)
T KOG0680|consen 381 ITREDYEEHGPSWCTKKRF 399 (400)
T ss_pred ecHhhHhhcCchhhhhhcc
Confidence 9999999999999998876
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=3.8e-39 Score=319.17 Aligned_cols=314 Identities=20% Similarity=0.282 Sum_probs=244.9
Q ss_pred CceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHH
Q 008119 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~ 251 (577)
-++++|+||+. ...|.|.|||++|.+. +|+.||.+|+..+.+.|..+|++| -.|+++++.++.+
T Consensus 57 ldf~ig~eal~---~~~ysl~ypiRhg~ve---------~wd~mer~~~q~ifkylr~ePedh----~fLlteppln~pe 120 (415)
T KOG0678|consen 57 LDFFIGDEALD---ATTYSLKYPIRHGQVE---------DWDLMERFWEQCIFKYLRAEPEDH----YFLLTEPPLNQPE 120 (415)
T ss_pred cceecccHHHh---hcccccccceeccccc---------cHHHHHHHHhhhhhhhhcCCcccc----eEEecCCCCCCch
Confidence 46899999998 3589999999999998 999999999999999999999998 6899999999999
Q ss_pred HHH-HHHHHHhhcCCceEEecchhhHHhhhcC--------CcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHH
Q 008119 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNG--------LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDIS 322 (577)
Q Consensus 252 ~r~-l~ellfE~~~~~~v~~~~~~vla~f~~G--------~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit 322 (577)
.|+ +.+++||.|+++.+|++-++++|+-+.= .-||+|||.|.+.|+|.||.||+++.+++..+++.|+|+|
T Consensus 121 nreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT 200 (415)
T KOG0678|consen 121 NREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 200 (415)
T ss_pred hhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchh
Confidence 988 9999999999999999999999876541 2489999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCCCceeEeeeeccCCCcccCC
Q 008119 323 RCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYP 402 (577)
Q Consensus 323 ~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~p 402 (577)
.++.++|+.++.+++ + ....+.++.+||++||+.++-+ ..+..|..+ |..-.|+ ...+.
T Consensus 201 ~fiQ~llRer~~~iP-----~--e~sl~tak~iKe~ycy~cPdiv---kef~k~d~e-p~K~ikq-~~~~~--------- 259 (415)
T KOG0678|consen 201 YFIQQLLREREVGIP-----P--EQSLETAKAIKEKYCYTCPDIV---KEFAKYDRE-PAKWIKQ-YTGIN--------- 259 (415)
T ss_pred HHHHHHhhCCCCCCC-----h--HHhhhhhHHHHhhhcccCcHHH---HHHHHhccC-HHHHHHH-Hhccc---------
Confidence 999999988775432 2 2456889999999999987422 122222211 1100000 00000
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCcccccC-CCcCCCCCCCCCcCCCCCCCCCCCccCCCCCCccCCCHHHHHHHHHh
Q 008119 403 KLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSIL 481 (577)
Q Consensus 403 ~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-er~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~ 481 (577)
.+. .....++.+ +||--||++|.+.... ..-..+|++.|-..|+
T Consensus 260 -~i~-------------------~~~~~vDvgyerFlgpEiff~Pe~a~---------------~d~~~~~~~~vd~~Iq 304 (415)
T KOG0678|consen 260 -VIT-------------------GKKFVVDVGYERFLGPEIFFHPEFAN---------------PDFLTPLSEVVDWVIQ 304 (415)
T ss_pred -hhc-------------------CCceeecccHHhhcChhhhcCccccC---------------CccCcchHHHhhhhhh
Confidence 000 001123344 6888899988543210 0234679999999999
Q ss_pred cCCChhhHHHhhcCeEEecCCcCCCChHHHHHHHHHhhCC--------------CCCcceEE-------EE------eee
Q 008119 482 STGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIP--------------SNEAIDMV-------EV------LGI 534 (577)
Q Consensus 482 ~c~~~d~r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~P--------------~~~~v~~v-------~v------las 534 (577)
+| ++|.||-||.||++.||.+++++|..||++.+..++- ....+.++ +| |+|
T Consensus 305 ~~-pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~las 383 (415)
T KOG0678|consen 305 HC-PIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLAS 383 (415)
T ss_pred hC-CcccchhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcceeccCccccC
Confidence 99 9999999999999999999999999999999887642 11111111 22 788
Q ss_pred cCCCCceeEeHHHHhhcCCCceec
Q 008119 535 LDFGRDAWIHREDWIRNGIHIGSG 558 (577)
Q Consensus 535 L~sf~~~wItr~EYeE~G~~il~r 558 (577)
-+.|-..+-||+||||+|++|++.
T Consensus 384 tpef~~~~~tk~~yee~g~si~r~ 407 (415)
T KOG0678|consen 384 TPEFVPACHTKEDYEEYGPSICRT 407 (415)
T ss_pred CcccccccCcchhhhhhChhhhhc
Confidence 889999999999999999999865
No 16
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=3.2e-36 Score=314.93 Aligned_cols=169 Identities=19% Similarity=0.250 Sum_probs=142.1
Q ss_pred EccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHHHHH-
Q 008119 176 CGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKE- 254 (577)
Q Consensus 176 vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~~r~- 254 (577)
||++.+.... .....+.|+.+.++. ||+.+|.|++|+| .+||+++.+ .-+|+++||..+++.+.|.
T Consensus 68 vgnd~~~~~~-~Rs~~rSPFd~nVvt---------Nwel~E~ilDY~F-~~LG~~~~~--idhPIilTE~laNP~~~R~~ 134 (645)
T KOG0681|consen 68 VGNDILNFQG-VRSSPRSPFDRNVVT---------NWELMEQILDYIF-GKLGVDGQG--IDHPIILTEALANPVYSRSE 134 (645)
T ss_pred ccchhhhhhh-hhccCCCCCcCCccc---------cHHHHHHHHHHHH-HhcCCCccC--CCCCeeeehhccChHHHHHH
Confidence 4544443321 235578899999998 9999999999999 689998864 2348999999999999886
Q ss_pred HHHHHHhhcCCceEEecchhhHHhhh-cCCc---ceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHH
Q 008119 255 MLSIVLRDLRFASAVVHQEGLAAVFG-NGLS---TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 255 l~ellfE~~~~~~v~~~~~~vla~f~-~G~~---tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~ 330 (577)
|.++|||.+|+|+|.+.-+++.|+|. .+.. +|+||++|++.|+|.||.||..+-..+.|+++||..++.||.+||+
T Consensus 135 m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq 214 (645)
T KOG0681|consen 135 MVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQ 214 (645)
T ss_pred HHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHh
Confidence 99999999999999999999999994 3433 6999999999999999999999988899999999999999999998
Q ss_pred hcCCCCCcccccccccchHHHHHHHHHHcccccC
Q 008119 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKE 364 (577)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~ 364 (577)
.+- |. .-+..++.-++.|++.+||++.
T Consensus 215 ~Ky--p~-----~~~~~t~sk~E~l~~eHcyis~ 241 (645)
T KOG0681|consen 215 LKY--PF-----HLNAFTGSKAERLLHEHCYISP 241 (645)
T ss_pred ccC--cc-----chhhcCHHHHHHHhhhhceeCc
Confidence 652 21 1234678889999999999986
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.97 E-value=1.9e-29 Score=265.01 Aligned_cols=250 Identities=18% Similarity=0.203 Sum_probs=183.0
Q ss_pred ceEEccccccCCC--CCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChH
Q 008119 173 EFICGEEALRVSP--TEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNR 250 (577)
Q Consensus 173 ~~~vG~eAl~~~~--~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~ 250 (577)
.++||++|..... ..++.+++||++|.+. ||++++.+|+|+|++.+...+.+.+ .++++.|.+.+.
T Consensus 46 ~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~e~ll~~~~~~~~~~~~~~~~---~vvit~P~~~~~ 113 (335)
T PRK13930 46 VLAVGEEAKEMLGRTPGNIEAIRPLKDGVIA---------DFEATEAMLRYFIKKARGRRFFRKP---RIVICVPSGITE 113 (335)
T ss_pred EEEEcHHHHHhhhcCCCCeEEeecCCCCeEc---------CHHHHHHHHHHHHHHHhhcccCCCC---cEEEEECCCCCH
Confidence 4679999987532 2468899999999998 9999999999999544443233222 677777776666
Q ss_pred HHHHHHHHHHhhcCCceEEecchhhHHhhhcCC-----cceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHH
Q 008119 251 EIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 325 (577)
Q Consensus 251 ~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~-----~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L 325 (577)
..|+.+..+||.+|++.++++++++||+|++|. .+++|||+|+++|+|++|.+|.++. ...+++||+++|+.|
T Consensus 114 ~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~--~~~~~lGG~~id~~l 191 (335)
T PRK13930 114 VERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY--SESIRVAGDEMDEAI 191 (335)
T ss_pred HHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe--ecCcCchhHHHHHHH
Confidence 667766668999999999999999999999998 4679999999999999999998875 356899999999999
Q ss_pred HHHHHhcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhc--cccCCCCCCCceeEeeeeccCCCcccCCc
Q 008119 326 LWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVH--SYEDGMPPGSHKTRLIALNVPPMGLFYPK 403 (577)
Q Consensus 326 ~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~--~~~~~~p~~~~k~~~~~~~~aP~~lF~p~ 403 (577)
.+++..+. .+ ..+...++++|+++|++............ ....+.|
T Consensus 192 ~~~l~~~~--------~~--~~~~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 239 (335)
T PRK13930 192 VQYVRRKY--------NL--LIGERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLP---------------------- 239 (335)
T ss_pred HHHHHHHh--------CC--CCCHHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCC----------------------
Confidence 99886541 11 13447899999999988653110000000 0000000
Q ss_pred ccCCCCCCCCCCCCCCCcccccCCCcccccCCCcCCCCCCCCCcCCCCCCCCCCCccCCCCCCccCCCHHHHHHHHHhcC
Q 008119 404 LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILST 483 (577)
Q Consensus 404 i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~er~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c 483 (577)
+ .+.++ +....|.+++. ..++.+.|.++|.+|
T Consensus 240 -----------------------~--~~~i~-~~~~~e~i~~~----------------------~~~i~~~i~~~l~~~ 271 (335)
T PRK13930 240 -----------------------K--TIEIS-SEEVREALAEP----------------------LQQIVEAVKSVLEKT 271 (335)
T ss_pred -----------------------e--eEEEC-HHHHHHHHHHH----------------------HHHHHHHHHHHHHhC
Confidence 0 00011 00111233321 237889999999999
Q ss_pred CChhhHHHhhcC-eEEecCCcCCCChHHHHHHHHH
Q 008119 484 GRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVL 517 (577)
Q Consensus 484 ~~~d~r~~L~~N-IvLvGG~S~ipG~~~RLe~eL~ 517 (577)
+.+.+.+++.| |+|+||+|++|||.+||++++.
T Consensus 272 -~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~ 305 (335)
T PRK13930 272 -PPELAADIIDRGIVLTGGGALLRGLDKLLSEETG 305 (335)
T ss_pred -CHHHhhHHHhCCEEEECchhcchhHHHHHHHHHC
Confidence 88999999998 9999999999999999999986
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.97 E-value=1.6e-29 Score=265.72 Aligned_cols=250 Identities=18% Similarity=0.218 Sum_probs=181.9
Q ss_pred ceEEccccccCCC--CCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChH
Q 008119 173 EFICGEEALRVSP--TEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNR 250 (577)
Q Consensus 173 ~~~vG~eAl~~~~--~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~ 250 (577)
.++||++|.+... ..++.+.+||++|.+. ||+.++.+|+++|.+.++. ..+++ .++++.|.+.+.
T Consensus 43 ~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~~~ll~~~~~~~~~~-~~~~~---~~vi~vP~~~~~ 109 (334)
T PRK13927 43 VLAVGEEAKQMLGRTPGNIVAIRPMKDGVIA---------DFDVTEKMLKYFIKKVHKN-FRPSP---RVVICVPSGITE 109 (334)
T ss_pred EEEecHHHHHHhhcCCCCEEEEecCCCCeec---------CHHHHHHHHHHHHHHHhhc-cCCCC---cEEEEeCCCCCH
Confidence 3579999987642 2568899999999998 9999999999999877766 44443 466665655556
Q ss_pred HHHHHHHHHHhhcCCceEEecchhhHHhhhcCC-----cceEEEeeCCCeEEEEEe-eCCeeeccCcEEeccchhHHHHH
Q 008119 251 EIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEDISRC 324 (577)
Q Consensus 251 ~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~-----~tglVVDiG~~~T~V~pV-~dG~vi~~s~~~l~~GG~dit~~ 324 (577)
..|++++.+|+.+|++.++++++++||+|++|. ..++|||+|+++|+|++| ++|++...+ .++||+++|+.
T Consensus 110 ~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~---~~lGG~~id~~ 186 (334)
T PRK13927 110 VERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKS---VRVGGDKFDEA 186 (334)
T ss_pred HHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCC---cCChHHHHHHH
Confidence 666799999999999999999999999999997 357999999999999999 788877665 47999999999
Q ss_pred HHHHHHhcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCCCceeEeeeeccCCCcccCCcc
Q 008119 325 LLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKL 404 (577)
Q Consensus 325 L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~p~i 404 (577)
|.+++.... .+ ..+...++++|+++|++...+... ...+.. + ..
T Consensus 187 l~~~l~~~~--------~~--~~~~~~ae~iK~~~~~~~~~~~~~----------------~~~~~~----~------~~ 230 (334)
T PRK13927 187 IINYVRRNY--------NL--LIGERTAERIKIEIGSAYPGDEVL----------------EMEVRG----R------DL 230 (334)
T ss_pred HHHHHHHHh--------Cc--CcCHHHHHHHHHHhhccCCCCCCc----------------eEEEeC----c------cc
Confidence 999876431 12 134578999999999876421000 000000 0 00
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCcccccCCCcCCCCCCCCCcCCCCCCCCCCCccCCCCCCccCCCHHHHHHHHHhcCC
Q 008119 405 LVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTG 484 (577)
Q Consensus 405 ~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~er~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~ 484 (577)
.. . .++ .+.++ |....|.+++. ..++.++|.++|.+|
T Consensus 231 ~~-~----------------~~~--~~~i~-~~~~~e~i~~~----------------------~~~i~~~i~~~l~~~- 267 (334)
T PRK13927 231 VT-G----------------LPK--TITIS-SNEIREALQEP----------------------LSAIVEAVKVALEQT- 267 (334)
T ss_pred CC-C----------------CCe--EEEEC-HHHHHHHHHHH----------------------HHHHHHHHHHHHHHC-
Confidence 00 0 000 00011 00111233321 237889999999999
Q ss_pred ChhhHHHhhcC-eEEecCCcCCCChHHHHHHHHH
Q 008119 485 RIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVL 517 (577)
Q Consensus 485 ~~d~r~~L~~N-IvLvGG~S~ipG~~~RLe~eL~ 517 (577)
+.+.+.+++.+ |+|+||+|++|||.+||++++.
T Consensus 268 ~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~ 301 (334)
T PRK13927 268 PPELAADIVDRGIVLTGGGALLRGLDKLLSEETG 301 (334)
T ss_pred CchhhhhhhcCCEEEECchhhhhHHHHHHHHHHC
Confidence 78888999985 9999999999999999999985
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.94 E-value=2.1e-26 Score=241.96 Aligned_cols=254 Identities=17% Similarity=0.176 Sum_probs=184.5
Q ss_pred CceEEccccccCCCC--CCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCCh
Q 008119 172 REFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDN 249 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~--~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~ 249 (577)
+-++||++|.+...+ .++.+.+||++|.+. ||+.++.+|+|+|.+.++......+ +++++.|.+.+
T Consensus 43 ~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~~~~~~~~l~~~~~~~~~~~~---~~vitvP~~~~ 110 (333)
T TIGR00904 43 SILAVGHEAKEMLGKTPGNIVAIRPMKDGVIA---------DFEVTEKMIKYFIKQVHSRKSFFKP---RIVICVPSGIT 110 (333)
T ss_pred eEEEEhHHHHHhhhcCCCCEEEEecCCCCEEE---------cHHHHHHHHHHHHHHHhcccccCCC---cEEEEeCCCCC
Confidence 347899999987422 678999999999998 9999999999999776654322332 47776666655
Q ss_pred HHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC-----cceEEEeeCCCeEEEEEe-eCCeeeccCcEEeccchhHHHH
Q 008119 250 REIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEDISR 323 (577)
Q Consensus 250 ~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~-----~tglVVDiG~~~T~V~pV-~dG~vi~~s~~~l~~GG~dit~ 323 (577)
...|+.++.+|+.+|++.++++.+++||+|++|. .+++|||+|+++|+|++| ++|+++..+ .++||+++|+
T Consensus 111 ~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~---~~lGG~did~ 187 (333)
T TIGR00904 111 PVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRS---IRVGGDEFDE 187 (333)
T ss_pred HHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecCC---ccchHHHHHH
Confidence 5666778889999999999999999999999998 568999999999999999 788877654 4899999999
Q ss_pred HHHHHHHhcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCCCceeEeeeeccCCCcccCCc
Q 008119 324 CLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPK 403 (577)
Q Consensus 324 ~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~p~ 403 (577)
.|.+++.... .+ ..+...++++|+++|++....... .... . .+ .+.. + -
T Consensus 188 ~l~~~l~~~~--------~~--~~~~~~ae~lK~~l~~~~~~~~~~-~~~~-~-~~-~~~~--~------~--------- 236 (333)
T TIGR00904 188 AIINYIRRTY--------NL--LIGEQTAERIKIEIGSAYPLNDEP-RKME-V-RG-RDLV--T------G--------- 236 (333)
T ss_pred HHHHHHHHHh--------cc--cCCHHHHHHHHHHHhccccccccc-ccee-e-cC-cccc--C------C---------
Confidence 9998775431 11 234578999999999875421000 0000 0 00 0000 0 0
Q ss_pred ccCCCCCCCCCCCCCCCcccccCCCcccccCCCcCCCCCCCCCcCCCCCCCCCCCccCCCCCCccCCCHHHHHHHHHhcC
Q 008119 404 LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILST 483 (577)
Q Consensus 404 i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~er~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c 483 (577)
++++. .++ +..+.|.+|+. ..++.+.|.+++.+|
T Consensus 237 ---------------------~~~~~--~i~-~~~~~e~i~~~----------------------~~~i~~~i~~~l~~~ 270 (333)
T TIGR00904 237 ---------------------LPRTI--EIT-SVEVREALQEP----------------------VNQIVEAVKRTLEKT 270 (333)
T ss_pred ---------------------CCeEE--EEC-HHHHHHHHHHH----------------------HHHHHHHHHHHHHhC
Confidence 00000 000 11123334322 236889999999999
Q ss_pred CChhhHHHhhc-CeEEecCCcCCCChHHHHHHHHHh
Q 008119 484 GRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVLH 518 (577)
Q Consensus 484 ~~~d~r~~L~~-NIvLvGG~S~ipG~~~RLe~eL~~ 518 (577)
+.+.+.++++ +|+|+||+|++|||.+||++++..
T Consensus 271 -~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~ 305 (333)
T TIGR00904 271 -PPELAADIVERGIVLTGGGALLRNLDKLLSKETGL 305 (333)
T ss_pred -CchhhhhhccCCEEEECcccchhhHHHHHHHHHCC
Confidence 8899999997 799999999999999999999953
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.93 E-value=4.7e-25 Score=231.87 Aligned_cols=245 Identities=16% Similarity=0.230 Sum_probs=176.9
Q ss_pred ceEEccccccCCCC--CCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhh---hcCCCCCCCCccceEEecCCCC
Q 008119 173 EFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTE---KLHIPRSERNLYSAILVLPESF 247 (577)
Q Consensus 173 ~~~vG~eAl~~~~~--~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~---~L~i~~~~~~~~~~vlvi~~~~ 247 (577)
-++||++|.....+ .+..+.+||++|.+. +|+.++.+|+|++.+ .++...... +++++.|++
T Consensus 42 ~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~---------d~d~~~~~l~~~~~~~~~~l~~~~~~~----~vvitvP~~ 108 (335)
T PRK13929 42 VLAIGTEAKNMIGKTPGKIVAVRPMKDGVIA---------DYDMTTDLLKQIMKKAGKNIGMTFRKP----NVVVCTPSG 108 (335)
T ss_pred EEEeCHHHHHhhhcCCCcEEEEecCCCCccC---------CHHHHHHHHHHHHHHHHHhcCCCCCCC----eEEEEcCCC
Confidence 36899999886533 568889999999998 999999999999963 566655433 567765655
Q ss_pred -ChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC-----cceEEEeeCCCeEEEEEe-eCCeeeccCcEEeccchhH
Q 008119 248 -DNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGED 320 (577)
Q Consensus 248 -~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~-----~tglVVDiG~~~T~V~pV-~dG~vi~~s~~~l~~GG~d 320 (577)
+..+.+.+.+ +|+.+|++.++++.+++||++++|. .+++|||+|+++|++++| ++|.+... .+++||++
T Consensus 109 ~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~---~~~~GG~~ 184 (335)
T PRK13929 109 STAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSCH---SIRIGGDQ 184 (335)
T ss_pred CCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEec---CcCCHHHH
Confidence 4444444666 9999999999999999999999984 568999999999999999 66666544 36899999
Q ss_pred HHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhc--cccCCCCCCCceeEeeeeccCCCc
Q 008119 321 ISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVH--SYEDGMPPGSHKTRLIALNVPPMG 398 (577)
Q Consensus 321 it~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~--~~~~~~p~~~~k~~~~~~~~aP~~ 398 (577)
+|+.|.+.+.... ++. .+...+|++|+++|++.....+...... ....+.|.
T Consensus 185 id~~l~~~l~~~~--------~~~--~~~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~---------------- 238 (335)
T PRK13929 185 LDEDIVSFVRKKY--------NLL--IGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPK---------------- 238 (335)
T ss_pred HHHHHHHHHHHHh--------CcC--cCHHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCe----------------
Confidence 9999999876431 121 2457899999999987532100000000 00000110
Q ss_pred ccCCcccCCCCCCCCCCCCCCCcccccCCCcccccC-CCcC--CCCCCCCCcCCCCCCCCCCCccCCCCCCccCCCHHHH
Q 008119 399 LFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSD--ISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEA 475 (577)
Q Consensus 399 lF~p~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-er~~--~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~gL~ea 475 (577)
.+.++ +++. ++|. ...+.++
T Consensus 239 -------------------------------~i~i~~~~~~~~i~~~--------------------------l~~i~~~ 261 (335)
T PRK13929 239 -------------------------------TITLESKEIQGAMRES--------------------------LLHILEA 261 (335)
T ss_pred -------------------------------EEEEcHHHHHHHHHHH--------------------------HHHHHHH
Confidence 00000 0100 1111 1247899
Q ss_pred HHHHHhcCCChhhHHHhhc-CeEEecCCcCCCChHHHHHHHHHh
Q 008119 476 VTSSILSTGRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVLH 518 (577)
Q Consensus 476 I~~SI~~c~~~d~r~~L~~-NIvLvGG~S~ipG~~~RLe~eL~~ 518 (577)
|.+++.+| +.+++.++++ +|+||||+|++|||.+||++++..
T Consensus 262 i~~~L~~~-~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~ 304 (335)
T PRK13929 262 IRATLEDC-PPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVV 304 (335)
T ss_pred HHHHHHhC-CcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCC
Confidence 99999999 8899999998 699999999999999999999963
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.90 E-value=9.7e-23 Score=211.37 Aligned_cols=249 Identities=19% Similarity=0.295 Sum_probs=169.0
Q ss_pred ceEEccccccCCCC--CCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEe-cCCCCCh
Q 008119 173 EFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILV-LPESFDN 249 (577)
Q Consensus 173 ~~~vG~eAl~~~~~--~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlv-i~~~~~~ 249 (577)
-+.+|++|..+..+ .++.+.||+++|.+. |++..+.++.|++++.++-.....+ .+++ +|.-.+.
T Consensus 39 i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~---------D~~~~~~~l~~~l~k~~~~~~~~~p---~vvi~vP~~~T~ 106 (326)
T PF06723_consen 39 ILAVGDEAKAMLGKTPDNIEVVRPLKDGVIA---------DYEAAEEMLRYFLKKALGRRSFFRP---RVVICVPSGITE 106 (326)
T ss_dssp EEEESHHHHTTTTS-GTTEEEE-SEETTEES---------SHHHHHHHHHHHHHHHHTSS-SS-----EEEEEE-SS--H
T ss_pred EEEEhHHHHHHhhcCCCccEEEccccCCccc---------CHHHHHHHHHHHHHHhccCCCCCCC---eEEEEeCCCCCH
Confidence 35699999887654 679999999999998 9999999999999766553222222 3444 5656666
Q ss_pred HHHHHHHHHHHhhcCCceEEecchhhHHhhhcCCc-----ceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHH
Q 008119 250 REIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRC 324 (577)
Q Consensus 250 ~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~~-----tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~ 324 (577)
.+.|.+.+.+ ...|+.+++++.+++||++|+|.. ..+|||||+++|.|+-+..|-++. ...+++||+++++.
T Consensus 107 verrA~~~a~-~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~--s~si~~gG~~~Dea 183 (326)
T PF06723_consen 107 VERRALIDAA-RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVA--SRSIRIGGDDIDEA 183 (326)
T ss_dssp HHHHHHHHHH-HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHHHHHH
T ss_pred HHHHHHHHHH-HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEE--EEEEEecCcchhHH
Confidence 6655566655 679999999999999999999963 469999999999999999887774 36789999999999
Q ss_pred HHHHHHhcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchh--ccccCCCCCCCceeEeeeeccCCCcccCC
Q 008119 325 LLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVV--HSYEDGMPPGSHKTRLIALNVPPMGLFYP 402 (577)
Q Consensus 325 L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~--~~~~~~~p~~~~k~~~~~~~~aP~~lF~p 402 (577)
+.+.++.+. ++ ..+...+|+||++++++...+.+....+ ++...|+|.. ......
T Consensus 184 I~~~ir~~y--------~l--~Ig~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~---~~i~~~---------- 240 (326)
T PF06723_consen 184 IIRYIREKY--------NL--LIGERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKS---IEITSS---------- 240 (326)
T ss_dssp HHHHHHHHH--------SE--E--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEE---EEEEHH----------
T ss_pred HHHHHHHhh--------Cc--ccCHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEE---EEEcHH----------
Confidence 999887652 33 4677999999999988764321111111 1112223210 111000
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCcccccCCCcCCCCCCCCCcCCCCCCCCCCCccCCCCCCccCCCHHHHHHHHHhc
Q 008119 403 KLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILS 482 (577)
Q Consensus 403 ~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~er~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~ 482 (577)
.+.+.+. .....+.++|.+.+++
T Consensus 241 -----------------------------------ev~~ai~----------------------~~~~~I~~~i~~~Le~ 263 (326)
T PF06723_consen 241 -----------------------------------EVREAIE----------------------PPVDQIVEAIKEVLEK 263 (326)
T ss_dssp -----------------------------------HHHHHHH----------------------HHHHHHHHHHHHHHHT
T ss_pred -----------------------------------HHHHHHH----------------------HHHHHHHHHHHHHHHh
Confidence 0000000 1123688999999999
Q ss_pred CCChhhHHHhhcC-eEEecCCcCCCChHHHHHHHHH
Q 008119 483 TGRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVL 517 (577)
Q Consensus 483 c~~~d~r~~L~~N-IvLvGG~S~ipG~~~RLe~eL~ 517 (577)
| |+++..+++.| |+||||+|+++||.++|++++.
T Consensus 264 ~-pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~ 298 (326)
T PF06723_consen 264 T-PPELAADILENGIVLTGGGALLRGLDEYISEETG 298 (326)
T ss_dssp S--HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHS
T ss_pred C-CHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHC
Confidence 9 99999998876 9999999999999999999996
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.89 E-value=1.2e-22 Score=213.68 Aligned_cols=250 Identities=19% Similarity=0.219 Sum_probs=178.5
Q ss_pred ceEEccccccCCCC--CCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCC-CCCCCccceEEecCCCCCh
Q 008119 173 EFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIP-RSERNLYSAILVLPESFDN 249 (577)
Q Consensus 173 ~~~vG~eAl~~~~~--~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~-~~~~~~~~~vlvi~~~~~~ 249 (577)
-+++|++|.++..+ .++.+.+||++|.+. +|+.++.+|+|++. ++... ..+++ .++++.|.+..
T Consensus 41 i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~---------d~~~~~~~l~~~~~-~~~~~~~~~~p---~~vitvP~~~~ 107 (336)
T PRK13928 41 VLAVGEEARRMVGRTPGNIVAIRPLRDGVIA---------DYDVTEKMLKYFIN-KACGKRFFSKP---RIMICIPTGIT 107 (336)
T ss_pred EEEecHHHHHhhhcCCCCEEEEccCCCCeEe---------cHHHHHHHHHHHHH-HHhccCCCCCC---eEEEEeCCCCC
Confidence 36899999987533 578889999999998 99999999999994 44332 33342 36666555545
Q ss_pred HHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC-----cceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHH
Q 008119 250 REIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRC 324 (577)
Q Consensus 250 ~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~-----~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~ 324 (577)
...|++++.+|+.+|++.+.++.+++||++++|. ..++|||+|+++|+|++|.+|.++... .+++||+++|+.
T Consensus 108 ~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~~--~~~lGG~did~~ 185 (336)
T PRK13928 108 SVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTSS--SIKVAGDKFDEA 185 (336)
T ss_pred HHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEeC--CcCCHHHHHHHH
Confidence 5556699999999999999999999999999997 568999999999999999988766543 689999999999
Q ss_pred HHHHHHhcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhc--cccCCCCCCCceeEeeeeccCCCcccCC
Q 008119 325 LLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVH--SYEDGMPPGSHKTRLIALNVPPMGLFYP 402 (577)
Q Consensus 325 L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~--~~~~~~p~~~~k~~~~~~~~aP~~lF~p 402 (577)
|.+.+.... .+ ..+...+|++|+++|.+............ ....+.|..
T Consensus 186 i~~~l~~~~--------~~--~~~~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~------------------- 236 (336)
T PRK13928 186 IIRYIRKKY--------KL--LIGERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKT------------------- 236 (336)
T ss_pred HHHHHHHHh--------ch--hcCHHHHHHHHHHhcccccccCCcEEEEecccccCCCceE-------------------
Confidence 998876431 11 13346799999999876432100000000 000000000
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCcccccCCCcCCCCCCCCCcCCCCCCCCCCCccCCCCCCccCCCHHHHHHHHHhc
Q 008119 403 KLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILS 482 (577)
Q Consensus 403 ~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~er~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~ 482 (577)
+.++ +....|.+++ -...+.+.|.+++.+
T Consensus 237 ----------------------------~~i~-~~~~~eii~~----------------------~~~~i~~~i~~~l~~ 265 (336)
T PRK13928 237 ----------------------------ITVT-SEEIREALKE----------------------PVSAIVQAVKSVLER 265 (336)
T ss_pred ----------------------------EEEC-HHHHHHHHHH----------------------HHHHHHHHHHHHHHh
Confidence 0000 0000111211 123578889999999
Q ss_pred CCChhhHHHhhc-CeEEecCCcCCCChHHHHHHHHHh
Q 008119 483 TGRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVLH 518 (577)
Q Consensus 483 c~~~d~r~~L~~-NIvLvGG~S~ipG~~~RLe~eL~~ 518 (577)
| +.+++.+++. +|+||||+|++||+.++|++++..
T Consensus 266 ~-~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~ 301 (336)
T PRK13928 266 T-PPELSADIIDRGIIMTGGGALLHGLDKLLAEETKV 301 (336)
T ss_pred C-CccccHhhcCCCEEEECcccchhhHHHHHHHHHCC
Confidence 9 7888889998 799999999999999999999964
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.71 E-value=2.2e-16 Score=159.19 Aligned_cols=251 Identities=20% Similarity=0.259 Sum_probs=174.9
Q ss_pred CceEEccccccCCCC--CCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccce-EEe-cCCCC
Q 008119 172 REFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSA-ILV-LPESF 247 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~--~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~-vlv-i~~~~ 247 (577)
.-+.||+||..+-.+ ++....+|++.|++. +++..+.++.|.+++..+-... .+ +| +++ +|.-.
T Consensus 45 ~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIA---------d~~~te~ml~~fik~~~~~~~~-~~--~prI~i~vP~g~ 112 (342)
T COG1077 45 VVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIA---------DFEVTELMLKYFIKKVHKNGSS-FP--KPRIVICVPSGI 112 (342)
T ss_pred eEEEehHHHHHHhccCCCCceEEeecCCcEee---------cHHHHHHHHHHHHHHhccCCCC-CC--CCcEEEEecCCc
Confidence 457899999988654 678999999999998 9999999999998543321211 11 12 333 44444
Q ss_pred ChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC----cc-eEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHH
Q 008119 248 DNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL----ST-ACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDIS 322 (577)
Q Consensus 248 ~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~----~t-glVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit 322 (577)
+..+.|.+-+ ..+.-|...|+++.++++|++|+|+ .+ ..|||||.++|.|+.+..|=++.. ..+.+||+.++
T Consensus 113 T~VErrAi~e-a~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~~--~Sirv~GD~~D 189 (342)
T COG1077 113 TDVERRAIKE-AAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVSS--SSVRVGGDKMD 189 (342)
T ss_pred cHHHHHHHHH-HHHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEEE--eeEEEecchhh
Confidence 5555443444 4578899999999999999999997 34 799999999999999976644422 35789999999
Q ss_pred HHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHcccccCCcccc----cchhccccCCCCCCCceeEeeeeccCCCc
Q 008119 323 RCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDA----VAVVHSYEDGMPPGSHKTRLIALNVPPMG 398 (577)
Q Consensus 323 ~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~----~~~~~~~~~~~p~~~~k~~~~~~~~aP~~ 398 (577)
+.+...++++. ++ .+....+|+||.+..++...+... ....++...|+|.. ....
T Consensus 190 e~Ii~yvr~~~--------nl--~IGe~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~---i~i~-------- 248 (342)
T COG1077 190 EAIIVYVRKKY--------NL--LIGERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKT---ITIN-------- 248 (342)
T ss_pred HHHHHHHHHHh--------Ce--eecHHHHHHHHHHhcccccccCCccceeeEEeeecccCCCee---EEEc--------
Confidence 99999887652 33 456678999999987765421110 00011111111110 0000
Q ss_pred ccCCcccCCCCCCCCCCCCCCCcccccCCCcccccCCCcCCCCCCCCCcCCCCCCCCCCCccCCCCCCccCCCHHHHHHH
Q 008119 399 LFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTS 478 (577)
Q Consensus 399 lF~p~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~er~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~ 478 (577)
+ ..+.|.+- .....|.++|..
T Consensus 249 -----------------------------------s--~ev~eal~----------------------~~v~~Iveair~ 269 (342)
T COG1077 249 -----------------------------------S--EEIAEALE----------------------EPLNGIVEAIRL 269 (342)
T ss_pred -----------------------------------H--HHHHHHHH----------------------HHHHHHHHHHHH
Confidence 0 00011110 113478899999
Q ss_pred HHhcCCChhhHHHhhcC-eEEecCCcCCCChHHHHHHHHHh
Q 008119 479 SILSTGRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLH 518 (577)
Q Consensus 479 SI~~c~~~d~r~~L~~N-IvLvGG~S~ipG~~~RLe~eL~~ 518 (577)
.+.+| |+++-.+.+.+ |+++||+|++.||.++|.++..-
T Consensus 270 ~Le~t-pPeL~~DI~ergivltGGGalLrglD~~i~~et~~ 309 (342)
T COG1077 270 VLEKT-PPELAADIVERGIVLTGGGALLRGLDRLLSEETGV 309 (342)
T ss_pred HHhhC-CchhcccHhhCceEEecchHHhcCchHhHHhccCC
Confidence 99999 88999999999 99999999999999999998764
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.40 E-value=7e-12 Score=125.84 Aligned_cols=135 Identities=19% Similarity=0.178 Sum_probs=104.9
Q ss_pred ecceeCCeeeecCCCCcccCHHHHHHHHHHHHh---hhcCCCCCCCCccceEEecCCCCChHHHHHHHHHHHhhcCCceE
Q 008119 192 HRPIRRGHLNISQHYPMQQVLEDLYAIWDWILT---EKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASA 268 (577)
Q Consensus 192 ~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~---~~L~i~~~~~~~~~~vlvi~~~~~~~~~r~l~ellfE~~~~~~v 268 (577)
..||++|.+. |++..+.++++++. ..++.... . +|+-+|..++..+.+ .+.-+++..|+.-+
T Consensus 28 ~~~~~~g~I~---------d~~~~~~~l~~l~~~a~~~~g~~~~-~----vvisVP~~~~~~~r~-a~~~a~~~aGl~~~ 92 (239)
T TIGR02529 28 ADVVRDGIVV---------DFLGAVEIVRRLKDTLEQKLGIELT-H----AATAIPPGTIEGDPK-VIVNVIESAGIEVL 92 (239)
T ss_pred cccccCCeEE---------EhHHHHHHHHHHHHHHHHHhCCCcC-c----EEEEECCCCCcccHH-HHHHHHHHcCCceE
Confidence 4689999999 99999999999984 24443221 1 566677777765544 34455678899999
Q ss_pred EecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHHhcCCCCCcccccccccch
Q 008119 269 VVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMD 348 (577)
Q Consensus 269 ~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~~~~~~p~~~~~~l~~~~d 348 (577)
.++.+++|++.+++....+|||+|+++|.++-+.+|.++. ...+++||+++|+.+.+.+. .+
T Consensus 93 ~li~ep~Aaa~~~~~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~~----------------i~ 154 (239)
T TIGR02529 93 HVLDEPTAAAAVLQIKNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGAYG----------------IS 154 (239)
T ss_pred EEeehHHHHHHHhcCCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHHhC----------------CC
Confidence 9999999999998887789999999999999989998775 35678999999998865431 34
Q ss_pred HHHHHHHHHHc
Q 008119 349 LLMLNRIKESY 359 (577)
Q Consensus 349 ~~l~e~LKe~~ 359 (577)
+..+|++|..+
T Consensus 155 ~~~AE~~K~~~ 165 (239)
T TIGR02529 155 FEEAEEYKRGH 165 (239)
T ss_pred HHHHHHHHHhc
Confidence 57789998654
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.18 E-value=7.9e-10 Score=112.85 Aligned_cols=138 Identities=19% Similarity=0.205 Sum_probs=103.5
Q ss_pred ceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHh---hhcCCCCCCCCccceEEecCCCCChHHHHHHHHHHHhhcCC
Q 008119 189 YCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILT---EKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRF 265 (577)
Q Consensus 189 ~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~---~~L~i~~~~~~~~~~vlvi~~~~~~~~~r~l~ellfE~~~~ 265 (577)
.....++++|.+. |++.....++++.. +.++++.. . .++-+|+.++....+.+. -+.+..|+
T Consensus 52 ~~~~~~vr~G~i~---------di~~a~~~i~~~~~~ae~~~g~~i~-~----v~~~vp~~~~~~~~~~~~-~~~~~aGl 116 (267)
T PRK15080 52 LEWADVVRDGIVV---------DFIGAVTIVRRLKATLEEKLGRELT-H----AATAIPPGTSEGDPRAII-NVVESAGL 116 (267)
T ss_pred eccccccCCCEEe---------eHHHHHHHHHHHHHHHHHHhCCCcC-e----EEEEeCCCCCchhHHHHH-HHHHHcCC
Confidence 3456789999988 89998888888874 23455422 1 344466666544433344 67788999
Q ss_pred ceEEecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHHhcCCCCCcccccccc
Q 008119 266 ASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTK 345 (577)
Q Consensus 266 ~~v~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~~~~~~p~~~~~~l~~ 345 (577)
.-..++.++.+++.+.+...++|||||+++|.++-+.+|.++.. ..+++||+++|+.+.+.+.
T Consensus 117 ~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l~--------------- 179 (267)
T PRK15080 117 EVTHVLDEPTAAAAVLGIDNGAVVDIGGGTTGISILKDGKVVYS--ADEPTGGTHMSLVLAGAYG--------------- 179 (267)
T ss_pred ceEEEechHHHHHHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE--ecccCchHHHHHHHHHHhC---------------
Confidence 99999999999999888777899999999999998899987754 4679999999999876542
Q ss_pred cchHHHHHHHHHHc
Q 008119 346 AMDLLMLNRIKESY 359 (577)
Q Consensus 346 ~~d~~l~e~LKe~~ 359 (577)
.++..+|++|...
T Consensus 180 -i~~~eAE~lK~~~ 192 (267)
T PRK15080 180 -ISFEEAEQYKRDP 192 (267)
T ss_pred -CCHHHHHHHHhcc
Confidence 2346688888653
No 26
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.89 E-value=6.5e-09 Score=112.90 Aligned_cols=94 Identities=16% Similarity=0.219 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC-----cceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHH
Q 008119 249 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISR 323 (577)
Q Consensus 249 ~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~-----~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~ 323 (577)
+..++.+.+ +++..|+.-..++.+++|++++++. ...||||+|+++|+++.+.+|.++ ....+++||+++|+
T Consensus 165 ~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it~ 241 (420)
T PRK09472 165 NDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVTS 241 (420)
T ss_pred hHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHHH
Confidence 344445655 6689999999999999999998864 247999999999999999999877 34579999999999
Q ss_pred HHHHHHHhcCCCCCcccccccccchHHHHHHHHHHccc
Q 008119 324 CLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCE 361 (577)
Q Consensus 324 ~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~ 361 (577)
.+...|. .+...+|+||.++..
T Consensus 242 dIa~~l~----------------i~~~~AE~lK~~~g~ 263 (420)
T PRK09472 242 DIAYAFG----------------TPPSDAEAIKVRHGC 263 (420)
T ss_pred HHHHHhC----------------cCHHHHHHHHHhcce
Confidence 9976442 234679999988743
No 27
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.84 E-value=1.3e-08 Score=108.91 Aligned_cols=90 Identities=20% Similarity=0.308 Sum_probs=73.1
Q ss_pred HHHHHHhhcCCceEEecchhhHHhhhcCC-----cceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHH
Q 008119 255 MLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQ 329 (577)
Q Consensus 255 l~ellfE~~~~~~v~~~~~~vla~f~~G~-----~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL 329 (577)
+.+ +++..|+.-+.+..+++|++++++. ...+|||+|+++|+++.+.+|.... ...+++||+++|+.+.+.+
T Consensus 163 ~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it~~i~~~l 239 (371)
T TIGR01174 163 LVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHITKDIAKAL 239 (371)
T ss_pred HHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHHHHHHHHh
Confidence 444 6688999999999999999998753 2469999999999999999998664 3568999999999887643
Q ss_pred HhcCCCCCcccccccccchHHHHHHHHHHccccc
Q 008119 330 RHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIK 363 (577)
Q Consensus 330 ~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~ 363 (577)
. .++..+|++|.+++...
T Consensus 240 ~----------------~~~~~AE~lK~~~~~~~ 257 (371)
T TIGR01174 240 R----------------TPLEEAERIKIKYGCAS 257 (371)
T ss_pred C----------------CCHHHHHHHHHHeeEec
Confidence 2 23477999999998764
No 28
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=98.62 E-value=4.8e-07 Score=103.69 Aligned_cols=91 Identities=21% Similarity=0.315 Sum_probs=70.1
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCCc-----ceEEEeeCCCeEEEEEee--CCee-eccC
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVE--DGVA-LPNT 310 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~~-----tglVVDiG~~~T~V~pV~--dG~v-i~~s 310 (577)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|.. ..+|+|+|++++.|+.+. +|.. +..+
T Consensus 177 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~ 255 (663)
T PTZ00400 177 AVITVPAYFNDSQ-RQATKDAGKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKAT 255 (663)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEec
Confidence 5666777787665 44555567888999999999999999998863 579999999999998774 5643 2223
Q ss_pred cEEeccchhHHHHHHHHHHH
Q 008119 311 EKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 311 ~~~l~~GG~dit~~L~~lL~ 330 (577)
.....+||+++++.|.+.+.
T Consensus 256 ~gd~~LGG~d~D~~l~~~l~ 275 (663)
T PTZ00400 256 NGNTSLGGEDFDQRILNYLI 275 (663)
T ss_pred ccCCCcCHHHHHHHHHHHHH
Confidence 33468999999999987654
No 29
>CHL00094 dnaK heat shock protein 70
Probab=98.61 E-value=6.8e-07 Score=101.91 Aligned_cols=91 Identities=21% Similarity=0.282 Sum_probs=68.4
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC-----cceEEEeeCCCeEEEEEeeCC--ee-eccC
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDG--VA-LPNT 310 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~-----~tglVVDiG~~~T~V~pV~dG--~v-i~~s 310 (577)
+|+-+|..|+..+ |+.+.-+.+..|+.-+.++.++.||++++|. ...+|+|+|++++.|+.+.-| .. +..+
T Consensus 138 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~ 216 (621)
T CHL00094 138 AVITVPAYFNDSQ-RQATKDAGKIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLST 216 (621)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEE
Confidence 5666788887554 4444555678899999999999999998875 357999999999999888533 21 1222
Q ss_pred cEEeccchhHHHHHHHHHHH
Q 008119 311 EKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 311 ~~~l~~GG~dit~~L~~lL~ 330 (577)
.....+||+++++.|.+.+.
T Consensus 217 ~gd~~lGG~d~D~~l~~~~~ 236 (621)
T CHL00094 217 SGDTHLGGDDFDKKIVNWLI 236 (621)
T ss_pred ecCCCcChHHHHHHHHHHHH
Confidence 33468999999999987553
No 30
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.60 E-value=1.6e-07 Score=100.77 Aligned_cols=90 Identities=17% Similarity=0.239 Sum_probs=74.0
Q ss_pred HHHHHHHhhcCCceEEecchhhHHhhhcCC-----cceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHH
Q 008119 254 EMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWT 328 (577)
Q Consensus 254 ~l~ellfE~~~~~~v~~~~~~vla~f~~G~-----~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~l 328 (577)
+-+.-++|+.|..-..++-+++|++.++=. -.+|+||+|+++|+|+...+|.+... ..+++||+++|+.+.+.
T Consensus 168 ~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~--~~ipvgG~~vT~DIa~~ 245 (418)
T COG0849 168 ENLEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYT--GVIPVGGDHVTKDIAKG 245 (418)
T ss_pred HHHHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEE--eeEeeCccHHHHHHHHH
Confidence 344556788999988999999999988743 36899999999999999999988855 46999999999999977
Q ss_pred HHhcCCCCCcccccccccchHHHHHHHHHHccc
Q 008119 329 QRHHQTWPQIRTDILTKAMDLLMLNRIKESYCE 361 (577)
Q Consensus 329 L~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~ 361 (577)
|. .+++.||+||.++..
T Consensus 246 l~----------------t~~~~AE~iK~~~g~ 262 (418)
T COG0849 246 LK----------------TPFEEAERIKIKYGS 262 (418)
T ss_pred hC----------------CCHHHHHHHHHHcCc
Confidence 63 234779999988843
No 31
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=98.59 E-value=4.9e-07 Score=102.53 Aligned_cols=92 Identities=22% Similarity=0.282 Sum_probs=69.2
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC-----cceEEEeeCCCeEEEEEee--CCee-eccC
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 310 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~-----~tglVVDiG~~~T~V~pV~--dG~v-i~~s 310 (577)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|. .+-+|+|+|++++.|+.+. +|.. +..+
T Consensus 132 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~ 210 (599)
T TIGR01991 132 AVITVPAYFDDAQ-RQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLAT 210 (599)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEE
Confidence 5666777777665 4455556788999999999999999988764 3479999999999998774 4432 1122
Q ss_pred cEEeccchhHHHHHHHHHHHh
Q 008119 311 EKTLPFGGEDISRCLLWTQRH 331 (577)
Q Consensus 311 ~~~l~~GG~dit~~L~~lL~~ 331 (577)
.....+||+|+++.|.+.+..
T Consensus 211 ~gd~~lGG~d~D~~l~~~l~~ 231 (599)
T TIGR01991 211 GGDSALGGDDFDHALAKWILK 231 (599)
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 223589999999999987654
No 32
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=98.56 E-value=7.7e-07 Score=101.60 Aligned_cols=91 Identities=22% Similarity=0.258 Sum_probs=69.6
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC-----cceEEEeeCCCeEEEEEee--CCee-eccC
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 310 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~-----~tglVVDiG~~~T~V~pV~--dG~v-i~~s 310 (577)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.+|.||++++|. ...+|+|+|++++.|+.+. +|.. +..+
T Consensus 163 aVITVPayF~~~q-R~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at 241 (657)
T PTZ00186 163 AVVTCPAYFNDAQ-RQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKAT 241 (657)
T ss_pred EEEEECCCCChHH-HHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEe
Confidence 5666777777654 4456667788899999999999999988875 3579999999999998875 6643 2223
Q ss_pred cEEeccchhHHHHHHHHHHH
Q 008119 311 EKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 311 ~~~l~~GG~dit~~L~~lL~ 330 (577)
..-..+||+|+++.|.+.+.
T Consensus 242 ~Gd~~LGG~DfD~~l~~~~~ 261 (657)
T PTZ00186 242 NGDTHLGGEDFDLALSDYIL 261 (657)
T ss_pred cCCCCCCchhHHHHHHHHHH
Confidence 33568999999999887553
No 33
>PLN03184 chloroplast Hsp70; Provisional
Probab=98.55 E-value=1e-06 Score=101.13 Aligned_cols=91 Identities=22% Similarity=0.310 Sum_probs=68.3
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC-----cceEEEeeCCCeEEEEEee--CCee-eccC
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 310 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~-----~tglVVDiG~~~T~V~pV~--dG~v-i~~s 310 (577)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|. ..-+|+|+|++++.|+.+. +|.. +..+
T Consensus 175 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~ 253 (673)
T PLN03184 175 AVITVPAYFNDSQ-RTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLST 253 (673)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEe
Confidence 5666777777655 4455556788899999999999999988875 3579999999999987774 3431 1222
Q ss_pred cEEeccchhHHHHHHHHHHH
Q 008119 311 EKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 311 ~~~l~~GG~dit~~L~~lL~ 330 (577)
.....+||+++++.|.+.+.
T Consensus 254 ~gd~~LGG~dfD~~L~~~~~ 273 (673)
T PLN03184 254 SGDTHLGGDDFDKRIVDWLA 273 (673)
T ss_pred cCCCccCHHHHHHHHHHHHH
Confidence 23468999999999987654
No 34
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=98.54 E-value=8.9e-07 Score=100.56 Aligned_cols=91 Identities=21% Similarity=0.286 Sum_probs=67.3
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC------cceEEEeeCCCeEEEEEee--CCee-ecc
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVICVE--DGVA-LPN 309 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~------~tglVVDiG~~~T~V~pV~--dG~v-i~~ 309 (577)
+|+-+|..|+..+. +.+.-..+..|+.-+.++.++.||++++|. .+.+|+|+|++++.|+.+. +|.. +..
T Consensus 133 ~VItVPa~f~~~qR-~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~ 211 (595)
T TIGR02350 133 AVITVPAYFNDAQR-QATKDAGKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLS 211 (595)
T ss_pred EEEEECCCCCHHHH-HHHHHHHHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEE
Confidence 56667888876653 444446678899999999999999988764 3479999999999987764 4422 222
Q ss_pred CcEEeccchhHHHHHHHHHHH
Q 008119 310 TEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 310 s~~~l~~GG~dit~~L~~lL~ 330 (577)
+.....+||.++++.|.+.+.
T Consensus 212 ~~gd~~lGG~d~D~~l~~~~~ 232 (595)
T TIGR02350 212 TAGDTHLGGDDFDQRIIDWLA 232 (595)
T ss_pred ecCCcccCchhHHHHHHHHHH
Confidence 233467999999999987554
No 35
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=98.51 E-value=1e-06 Score=100.66 Aligned_cols=91 Identities=21% Similarity=0.291 Sum_probs=68.0
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC-----cceEEEeeCCCeEEEEEee--CCee-eccC
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 310 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~-----~tglVVDiG~~~T~V~pV~--dG~v-i~~s 310 (577)
.|+-+|..|+..+. +.+.-..+..|+.-+.++.++.||++++|. .+.+|+|+|++++.|+.+. +|.. +..+
T Consensus 136 ~VItVPa~f~~~qR-~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~ 214 (627)
T PRK00290 136 AVITVPAYFNDAQR-QATKDAGKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLST 214 (627)
T ss_pred EEEEECCCCCHHHH-HHHHHHHHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEe
Confidence 56667888876653 444556678899999999999999988874 4589999999999988774 3322 2222
Q ss_pred cEEeccchhHHHHHHHHHHH
Q 008119 311 EKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 311 ~~~l~~GG~dit~~L~~lL~ 330 (577)
.....+||.++++.|.+.+.
T Consensus 215 ~gd~~lGG~d~D~~l~~~~~ 234 (627)
T PRK00290 215 NGDTHLGGDDFDQRIIDYLA 234 (627)
T ss_pred cCCCCcChHHHHHHHHHHHH
Confidence 33468999999999987654
No 36
>PRK13411 molecular chaperone DnaK; Provisional
Probab=98.49 E-value=1.3e-06 Score=99.98 Aligned_cols=91 Identities=21% Similarity=0.291 Sum_probs=67.4
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCCc------ceEEEeeCCCeEEEEEee--CCee-ecc
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS------TACVVNMGAQVTSVICVE--DGVA-LPN 309 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~~------tglVVDiG~~~T~V~pV~--dG~v-i~~ 309 (577)
+|+-+|..|+..+. +.+.-+.+..|+.-+.++.++.||++++|.. +-+|+|+|++++.|+.+. +|.. +..
T Consensus 136 ~VITVPa~f~~~qR-~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~a 214 (653)
T PRK13411 136 AVITVPAYFTDAQR-QATKDAGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKA 214 (653)
T ss_pred EEEEECCCCCcHHH-HHHHHHHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEE
Confidence 56667777876653 4445566788999999999999999988752 479999999999988764 3422 222
Q ss_pred CcEEeccchhHHHHHHHHHHH
Q 008119 310 TEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 310 s~~~l~~GG~dit~~L~~lL~ 330 (577)
+.....+||+++++.|.+.+.
T Consensus 215 t~gd~~LGG~dfD~~l~~~l~ 235 (653)
T PRK13411 215 TAGNNHLGGDDFDNCIVDWLV 235 (653)
T ss_pred EecCCCcCHHHHHHHHHHHHH
Confidence 233457999999999987554
No 37
>PRK11678 putative chaperone; Provisional
Probab=98.46 E-value=4.9e-06 Score=91.06 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=63.6
Q ss_pred eEEecCCCCC-----hHHH--HHHHHHHHhhcCCceEEecchhhHHhhhcCC-----cceEEEeeCCCeEEEEEee-CC-
Q 008119 239 AILVLPESFD-----NREI--KEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE-DG- 304 (577)
Q Consensus 239 ~vlvi~~~~~-----~~~~--r~l~ellfE~~~~~~v~~~~~~vla~f~~G~-----~tglVVDiG~~~T~V~pV~-dG- 304 (577)
+|+-+|.-|+ ..+. ++++.-..+..||+.+.++++++||++++|. ...+|+|+|++++.++.|. ++
T Consensus 152 ~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~ 231 (450)
T PRK11678 152 AVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPS 231 (450)
T ss_pred EEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCc
Confidence 5666777776 2232 2345666788999999999999999999874 3589999999999888774 22
Q ss_pred ---------eeeccCcEEeccchhHHHHHHH
Q 008119 305 ---------VALPNTEKTLPFGGEDISRCLL 326 (577)
Q Consensus 305 ---------~vi~~s~~~l~~GG~dit~~L~ 326 (577)
-++..+- ..+||+|+++.|.
T Consensus 232 ~~~~~~r~~~vla~~G--~~lGG~DfD~~L~ 260 (450)
T PRK11678 232 WRGRADRSASLLGHSG--QRIGGNDLDIALA 260 (450)
T ss_pred ccccCCcceeEEecCC--CCCChHHHHHHHH
Confidence 1333332 3699999999986
No 38
>PRK13410 molecular chaperone DnaK; Provisional
Probab=98.43 E-value=2.1e-06 Score=98.33 Aligned_cols=91 Identities=22% Similarity=0.301 Sum_probs=68.2
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC-----cceEEEeeCCCeEEEEEee--CCee-eccC
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 310 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~-----~tglVVDiG~~~T~V~pV~--dG~v-i~~s 310 (577)
+|+-+|..|+..+. +.+.-+.+..|+.-+.++.++.||++++|. .+.+|+|+|++++.|+.+. +|.. +..+
T Consensus 138 ~VITVPa~f~~~qR-~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at 216 (668)
T PRK13410 138 AVITVPAYFNDSQR-QATRDAGRIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKAT 216 (668)
T ss_pred EEEEECCCCCHHHH-HHHHHHHHHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEe
Confidence 56667777876654 445555678899999999999999998875 3479999999999998775 4532 2222
Q ss_pred cEEeccchhHHHHHHHHHHH
Q 008119 311 EKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 311 ~~~l~~GG~dit~~L~~lL~ 330 (577)
.....+||.++++.|.+.+.
T Consensus 217 ~gd~~lGG~dfD~~l~~~l~ 236 (668)
T PRK13410 217 SGDTQLGGNDFDKRIVDWLA 236 (668)
T ss_pred ecCCCCChhHHHHHHHHHHH
Confidence 23457999999999986553
No 39
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=98.42 E-value=1.2e-06 Score=99.78 Aligned_cols=92 Identities=21% Similarity=0.275 Sum_probs=69.0
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC-----cceEEEeeCCCeEEEEEee--CCee-eccC
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 310 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~-----~tglVVDiG~~~T~V~pV~--dG~v-i~~s 310 (577)
.|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|. ..-+|+|+|++++.|+.+. +|.. +..+
T Consensus 152 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat 230 (616)
T PRK05183 152 AVITVPAYFDDAQ-RQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLAT 230 (616)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEe
Confidence 5666777777665 4455666788999999999999999987765 2469999999999998775 4432 1222
Q ss_pred cEEeccchhHHHHHHHHHHHh
Q 008119 311 EKTLPFGGEDISRCLLWTQRH 331 (577)
Q Consensus 311 ~~~l~~GG~dit~~L~~lL~~ 331 (577)
.....+||.|+++.|.+.+..
T Consensus 231 ~gd~~lGG~d~D~~l~~~~~~ 251 (616)
T PRK05183 231 GGDSALGGDDFDHLLADWILE 251 (616)
T ss_pred cCCCCcCHHHHHHHHHHHHHH
Confidence 234679999999999886654
No 40
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=98.41 E-value=2.6e-06 Score=96.44 Aligned_cols=92 Identities=20% Similarity=0.308 Sum_probs=69.3
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCCc-----ceEEEeeCCCeEEEEEee--CCee-eccC
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVE--DGVA-LPNT 310 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~~-----tglVVDiG~~~T~V~pV~--dG~v-i~~s 310 (577)
+|+-+|..|+..+ |+.+.-+.+..|+.-+.+++++.||++++|.. +.+|+|+|++++.|+.+. +|.. +-.+
T Consensus 144 aVITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at 222 (595)
T PRK01433 144 AVITVPAHFNDAA-RGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIAT 222 (595)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEE
Confidence 5666777777655 44556667888999999999999999998752 469999999999988774 5532 1122
Q ss_pred cEEeccchhHHHHHHHHHHHh
Q 008119 311 EKTLPFGGEDISRCLLWTQRH 331 (577)
Q Consensus 311 ~~~l~~GG~dit~~L~~lL~~ 331 (577)
..-..+||+|+++.|.+.+..
T Consensus 223 ~gd~~lGG~d~D~~l~~~~~~ 243 (595)
T PRK01433 223 NGDNMLGGNDIDVVITQYLCN 243 (595)
T ss_pred cCCcccChHHHHHHHHHHHHH
Confidence 233579999999999886654
No 41
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=98.41 E-value=2.5e-06 Score=97.72 Aligned_cols=91 Identities=20% Similarity=0.276 Sum_probs=68.6
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC-------cceEEEeeCCCeEEEEEee--CCee-ec
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-------STACVVNMGAQVTSVICVE--DGVA-LP 308 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~-------~tglVVDiG~~~T~V~pV~--dG~v-i~ 308 (577)
+|+-+|..|+..+ |+.+.-+.+..|+.-+.++.++.||++++|. .+.+|+|+|++++.|+-|. +|.. +.
T Consensus 143 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~ 221 (653)
T PTZ00009 143 AVVTVPAYFNDSQ-RQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVK 221 (653)
T ss_pred eEEEeCCCCCHHH-HHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence 5666777777655 4556667788899999999999999988864 3579999999999987764 5532 22
Q ss_pred cCcEEeccchhHHHHHHHHHHH
Q 008119 309 NTEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 309 ~s~~~l~~GG~dit~~L~~lL~ 330 (577)
.+.-...+||+++++.|.+.+.
T Consensus 222 a~~gd~~lGG~d~D~~l~~~~~ 243 (653)
T PTZ00009 222 ATAGDTHLGGEDFDNRLVEFCV 243 (653)
T ss_pred EecCCCCCChHHHHHHHHHHHH
Confidence 2223468999999999987553
No 42
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.18 E-value=3.6e-06 Score=95.60 Aligned_cols=91 Identities=23% Similarity=0.273 Sum_probs=66.5
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC------cceEEEeeCCCeEEEEEee--CCeee-cc
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVICVE--DGVAL-PN 309 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~------~tglVVDiG~~~T~V~pV~--dG~vi-~~ 309 (577)
+|+-+|..|+..+ |+.+.-+.+..|+..+.++.++.||+++++. .+-+|+|+|++++.|+.|. +|..- ..
T Consensus 138 ~vitVPa~~~~~q-r~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~ 216 (602)
T PF00012_consen 138 VVITVPAYFTDEQ-RQALRDAAELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLA 216 (602)
T ss_dssp EEEEE-TT--HHH-HHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEE
T ss_pred ceeeechhhhhhh-hhcccccccccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccc
Confidence 5666788888766 4466667788999999999999999987764 3679999999999888774 56432 22
Q ss_pred CcEEeccchhHHHHHHHHHHH
Q 008119 310 TEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 310 s~~~l~~GG~dit~~L~~lL~ 330 (577)
+.....+||+++++.|.+.+.
T Consensus 217 ~~~~~~lGG~~~D~~l~~~~~ 237 (602)
T PF00012_consen 217 TAGDNNLGGRDFDEALAEYLL 237 (602)
T ss_dssp EEEETTCSHHHHHHHHHHHHH
T ss_pred cccccccccceecceeecccc
Confidence 334568999999999988664
No 43
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=97.99 E-value=0.0001 Score=78.04 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHhhcCCceEEecchhhHHhhhc----------C-Cc-ceEEEeeCCCeEEEEEeeCCeeeccCcEEecc
Q 008119 249 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGN----------G-LS-TACVVNMGAQVTSVICVEDGVALPNTEKTLPF 316 (577)
Q Consensus 249 ~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~----------G-~~-tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~ 316 (577)
+..++.+.++ |+..|+.-..+..+++|..-+. . .. +.++||+|+..|+++-+.+|.++. .+.+++
T Consensus 142 ~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~--~r~i~~ 218 (348)
T TIGR01175 142 KEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF--TREVPF 218 (348)
T ss_pred HHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE--EEEeec
Confidence 3444456554 7888888777777777764322 1 12 388999999999999999998874 467999
Q ss_pred chhHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHc
Q 008119 317 GGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESY 359 (577)
Q Consensus 317 GG~dit~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~ 359 (577)
||+++|+.+.+.+. .++..++++|.+.
T Consensus 219 G~~~i~~~i~~~~~----------------~~~~~Ae~~k~~~ 245 (348)
T TIGR01175 219 GTRQLTSELSRAYG----------------LNPEEAGEAKQQG 245 (348)
T ss_pred hHHHHHHHHHHHcC----------------CCHHHHHHHHhcC
Confidence 99999998875431 2456788888643
No 44
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.60 E-value=0.00031 Score=74.28 Aligned_cols=124 Identities=20% Similarity=0.389 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCC--------------ccceEEecCCCCChHH-HHHHHHHHHhhcCCceEEecchhhH
Q 008119 212 LEDLYAIWDWILTEKLHIPRSERN--------------LYSAILVLPESFDNRE-IKEMLSIVLRDLRFASAVVHQEGLA 276 (577)
Q Consensus 212 ~~d~e~i~~~~~~~~L~i~~~~~~--------------~~~~vlvi~~~~~~~~-~r~l~ellfE~~~~~~v~~~~~~vl 276 (577)
-++++..+.+-..+.+.++..+.. .+ .||++- .+++ +...++ +|+..|+.-..+--++.|
T Consensus 87 ~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~-~Vll~A---a~k~~v~~~~~-~~~~aGL~~~~vDv~~~A 161 (340)
T PF11104_consen 87 EKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKM-EVLLVA---APKEIVESYVE-LFEEAGLKPVAVDVEAFA 161 (340)
T ss_dssp HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEE-EEEEEE---EEHHHHHHHHH-HHHHTT-EEEEEEEHHHH
T ss_pred HHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCce-EEEEEE---EcHHHHHHHHH-HHHHcCCceEEEeehHHH
Confidence 456677777666666555443321 11 233321 1333 333444 568888876655444433
Q ss_pred --HhhhcC---------CcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHHhcCCCCCcccccccc
Q 008119 277 --AVFGNG---------LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTK 345 (577)
Q Consensus 277 --a~f~~G---------~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~~~~~~p~~~~~~l~~ 345 (577)
-+|... ..+-++||||+..|+++-+.+|.++.. +.+++||+++|+.+.+.+.
T Consensus 162 l~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f~--R~i~~G~~~l~~~i~~~~~--------------- 224 (340)
T PF11104_consen 162 LARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIFS--RSIPIGGNDLTEAIARELG--------------- 224 (340)
T ss_dssp GGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEEE--EEEeeCHHHHHHHHHHhcC---------------
Confidence 344331 124599999999999999999998843 6789999999999986532
Q ss_pred cchHHHHHHHHHH
Q 008119 346 AMDLLMLNRIKES 358 (577)
Q Consensus 346 ~~d~~l~e~LKe~ 358 (577)
.+...++++|.+
T Consensus 225 -i~~~~Ae~~k~~ 236 (340)
T PF11104_consen 225 -IDFEEAEELKRS 236 (340)
T ss_dssp ---HHHHHHHHHH
T ss_pred -CCHHHHHHHHhc
Confidence 344667888755
No 45
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.001 Score=75.29 Aligned_cols=108 Identities=22% Similarity=0.275 Sum_probs=79.1
Q ss_pred HHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC-----cceEEE
Q 008119 215 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVV 289 (577)
Q Consensus 215 ~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~-----~tglVV 289 (577)
+.++++++ ...|+-...+ .|+=+|..|+..+ |+.+.-..+..|+.-+.++++|.||+|++|. ..-+|+
T Consensus 105 L~~lk~~a-e~~lg~~v~~-----~VItVPayF~d~q-R~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~ 177 (579)
T COG0443 105 LTKLKEDA-EAYLGEKVTD-----AVITVPAYFNDAQ-RQATKDAARIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVY 177 (579)
T ss_pred HHHHHHHH-HHhhCCCcce-----EEEEeCCCCCHHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhHhccCCCcEEEEE
Confidence 35555555 2455433222 4555666676665 6677888899999999999999999999986 367999
Q ss_pred eeCCCeEEEEEee--CCe-eeccCcEEeccchhHHHHHHHHHH
Q 008119 290 NMGAQVTSVICVE--DGV-ALPNTEKTLPFGGEDISRCLLWTQ 329 (577)
Q Consensus 290 DiG~~~T~V~pV~--dG~-vi~~s~~~l~~GG~dit~~L~~lL 329 (577)
|+|++++.|+-|. +|. -+..+.....+||+|++..|...+
T Consensus 178 DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~ 220 (579)
T COG0443 178 DLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYL 220 (579)
T ss_pred EcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHH
Confidence 9999999999885 452 333444567899999999988644
No 46
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=97.37 E-value=0.00087 Score=71.07 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=58.3
Q ss_pred cCCceEEecchhhHHhhhcCC-------------cceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHH
Q 008119 263 LRFASAVVHQEGLAAVFGNGL-------------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQ 329 (577)
Q Consensus 263 ~~~~~v~~~~~~vla~f~~G~-------------~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL 329 (577)
..+..|.+++|+++|+|.... ...+|||||+.+|.++.+.+|.+.......++.|..++-+.+.+.+
T Consensus 151 I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i 230 (344)
T PRK13917 151 INVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHI 230 (344)
T ss_pred EEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHH
Confidence 457789999999999876533 2459999999999999999998888777789999999999999888
Q ss_pred Hh
Q 008119 330 RH 331 (577)
Q Consensus 330 ~~ 331 (577)
+.
T Consensus 231 ~~ 232 (344)
T PRK13917 231 SK 232 (344)
T ss_pred Hh
Confidence 43
No 47
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=97.02 E-value=0.0035 Score=65.75 Aligned_cols=113 Identities=13% Similarity=0.077 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCccceEEec--CCCCChHHHHHHHHHHHhh--------cCCceEEecchhhHHhhhc-
Q 008119 213 EDLYAIWDWILTEKLHIPRSERNLYSAILVL--PESFDNREIKEMLSIVLRD--------LRFASAVVHQEGLAAVFGN- 281 (577)
Q Consensus 213 ~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi--~~~~~~~~~r~l~ellfE~--------~~~~~v~~~~~~vla~f~~- 281 (577)
++...++.+++.. .+.+ +. ..|++ |..+-..+.+++.+.+... +.+..|.+.+|++.|.|..
T Consensus 84 ~~~~~L~~~Al~~-~~~~--~~----~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~ 156 (320)
T TIGR03739 84 PEYMALLRGALAL-SKVR--EI----DQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFV 156 (320)
T ss_pred HHHHHHHHHHHHH-hcCC--CC----CEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHH
Confidence 4667888888843 3322 11 12343 3222122222355554432 5778899999999997754
Q ss_pred --------CCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHHhc
Q 008119 282 --------GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHH 332 (577)
Q Consensus 282 --------G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~~~ 332 (577)
.....+|||||+.+|.++.+.++.+.......++.|-.++.+.+.+.+...
T Consensus 157 ~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 157 AQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred hcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 224579999999999998777778877777788999999999999887643
No 48
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.15 E-value=0.035 Score=57.38 Aligned_cols=79 Identities=18% Similarity=0.332 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHhhcCCceEEecchhhHH--hhh-----cCC-c---ceEEEeeCCCeEEEEEeeCCeeeccCcEEeccc
Q 008119 249 NREIKEMLSIVLRDLRFASAVVHQEGLAA--VFG-----NGL-S---TACVVNMGAQVTSVICVEDGVALPNTEKTLPFG 317 (577)
Q Consensus 249 ~~~~r~l~ellfE~~~~~~v~~~~~~vla--~f~-----~G~-~---tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~G 317 (577)
++++-+-..-.|+.-|+....+=-++.+. +|. .|. + ..+|+|||+..|.++-+.+|.++.. +..++|
T Consensus 147 rkE~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly~--r~~~~g 224 (354)
T COG4972 147 RKEVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILYT--REVPVG 224 (354)
T ss_pred ehhhhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeeeE--eeccCc
Confidence 44443444456777788766666565554 333 122 2 2469999999999999999999854 789999
Q ss_pred hhHHHHHHHHHH
Q 008119 318 GEDISRCLLWTQ 329 (577)
Q Consensus 318 G~dit~~L~~lL 329 (577)
|+.+|+.+.+.+
T Consensus 225 ~~Qlt~~i~r~~ 236 (354)
T COG4972 225 TDQLTQEIQRAY 236 (354)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 49
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=95.94 E-value=0.016 Score=62.94 Aligned_cols=110 Identities=16% Similarity=0.193 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHHHHHHHHH---HHhhcCCceEEecchhhHHhhhcCC----
Q 008119 211 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSI---VLRDLRFASAVVHQEGLAAVFGNGL---- 283 (577)
Q Consensus 211 ~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~~r~l~el---lfE~~~~~~v~~~~~~vla~f~~G~---- 283 (577)
|-+.++.|.+.-+ ++-++.+++-.. ..++|+-..-..+..++.++- ...+|=+...-+--+++++.+|+|.
T Consensus 64 D~~~i~~~V~~ey-~~Agi~~~die~-~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLs 141 (475)
T PRK10719 64 DEAAIKELIEEEY-QKAGIAPESIDS-GAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLS 141 (475)
T ss_pred cHHHHHHHHHHHH-HHcCCCHHHccc-cEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhh
Confidence 7788999999887 578888865321 145565443333333333331 1111212222233445555555553
Q ss_pred ----cceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHH
Q 008119 284 ----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRC 324 (577)
Q Consensus 284 ----~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~ 324 (577)
...++||||+++|+++-..+|.++.. ..+++||++||..
T Consensus 142 eEke~gVa~IDIGgGTT~iaVf~~G~l~~T--~~l~vGG~~IT~D 184 (475)
T PRK10719 142 EERNTRVLNIDIGGGTANYALFDAGKVIDT--ACLNVGGRLIETD 184 (475)
T ss_pred hhccCceEEEEeCCCceEEEEEECCEEEEE--EEEecccceEEEC
Confidence 35799999999999999999988844 5699999998864
No 50
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.036 Score=58.39 Aligned_cols=111 Identities=17% Similarity=0.277 Sum_probs=68.8
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC------cceEEEeeCCCeEEEE--EeeCCee-ecc
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVI--CVEDGVA-LPN 309 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~------~tglVVDiG~~~T~V~--pV~dG~v-i~~ 309 (577)
+|+-+|..|+..+ |+.+.-.=--.|..-+-+++++.+|+.++|+ .+-+|.|.|.++-.|+ .|.+|.. +..
T Consensus 175 AVvTvPAYFNDAQ-rQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVla 253 (663)
T KOG0100|consen 175 AVVTVPAYFNDAQ-RQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLA 253 (663)
T ss_pred eEEecchhcchHH-HhhhcccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEe
Confidence 5666776676544 3333322223466778999999999988876 4679999999987665 4567741 112
Q ss_pred CcEEeccchhHHHHHHHH----HHHhcCCCCCcccccccccchHHHHHHHHHH
Q 008119 310 TEKTLPFGGEDISRCLLW----TQRHHQTWPQIRTDILTKAMDLLMLNRIKES 358 (577)
Q Consensus 310 s~~~l~~GG~dit~~L~~----lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~ 358 (577)
+.--..+||.|.++..++ +.+++.. .++ +.|...+..|+..
T Consensus 254 TnGDThLGGEDFD~rvm~~fiklykkK~g------kDv--~kdnkA~~KLrRe 298 (663)
T KOG0100|consen 254 TNGDTHLGGEDFDQRVMEYFIKLYKKKHG------KDV--RKDNKAVQKLRRE 298 (663)
T ss_pred cCCCcccCccchHHHHHHHHHHHHhhhcC------Ccc--chhhHHHHHHHHH
Confidence 223457899988876554 3333221 122 3455666777644
No 51
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=95.34 E-value=0.0093 Score=57.31 Aligned_cols=80 Identities=23% Similarity=0.247 Sum_probs=66.3
Q ss_pred HHhhcCCceEEecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHHhcCCCCCc
Q 008119 259 VLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQI 338 (577)
Q Consensus 259 lfE~~~~~~v~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~~~~~~p~~ 338 (577)
++|..|....+++.++.||++-.++..|.|||+|.++|-|+-|.+|.++..+ --+-||.++|-.| .|+
T Consensus 115 ViESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~A--DEpTGGtHmtLvl------AG~---- 182 (277)
T COG4820 115 VIESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYSA--DEPTGGTHMTLVL------AGN---- 182 (277)
T ss_pred eecccCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEec--cCCCCceeEEEEE------ecc----
Confidence 3578899999999999999999999999999999999999999999998664 3578999887443 232
Q ss_pred ccccccccchHHHHHHHH
Q 008119 339 RTDILTKAMDLLMLNRIK 356 (577)
Q Consensus 339 ~~~~l~~~~d~~l~e~LK 356 (577)
..++.+.+|+.|
T Consensus 183 ------ygi~~EeAE~~K 194 (277)
T COG4820 183 ------YGISLEEAEQYK 194 (277)
T ss_pred ------cCcCHhHHHHhh
Confidence 135667788887
No 52
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.25 Score=56.01 Aligned_cols=92 Identities=17% Similarity=0.244 Sum_probs=64.8
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC----------cceEEEeeCCCeEEEEEeeCCee--
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL----------STACVVNMGAQVTSVICVEDGVA-- 306 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~----------~tglVVDiG~~~T~V~pV~dG~v-- 306 (577)
+|+-+|+.|+..+++.+++- -+-.|..-++++++..+++..+|. +.-+|-|+|+++|+.+-|.--.+
T Consensus 161 ~ViTVP~~F~qaeR~all~A-a~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~ 239 (902)
T KOG0104|consen 161 MVITVPPFFNQAERRALLQA-AQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKT 239 (902)
T ss_pred eEEeCCcccCHHHHHHHHHH-HHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeecc
Confidence 46667778887776544442 345678889999999999988775 34699999999999988852111
Q ss_pred --e----cc-----CcEEeccchhHHHHHHHHHHHh
Q 008119 307 --L----PN-----TEKTLPFGGEDISRCLLWTQRH 331 (577)
Q Consensus 307 --i----~~-----s~~~l~~GG~dit~~L~~lL~~ 331 (577)
. +. ..-...+||..+|..|...|..
T Consensus 240 k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 240 KEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred ccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 1 10 1113468999999998877653
No 53
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=93.82 E-value=0.17 Score=55.11 Aligned_cols=106 Identities=20% Similarity=0.237 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHHHHHHHHHHHhhcCC---ceEEecchhhHHhhhcCC----
Q 008119 211 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRF---ASAVVHQEGLAAVFGNGL---- 283 (577)
Q Consensus 211 ~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~~r~l~ellfE~~~~---~~v~~~~~~vla~f~~G~---- 283 (577)
|-+.+++|.+.-+ ++-++.|++-. -.+|+||-..-.+..-+++++.|-+..|= ...----|+++|..|+|.
T Consensus 61 D~~al~~iv~~eY-~~Agi~p~~I~-TGAVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S 138 (473)
T PF06277_consen 61 DAEALKEIVEEEY-RKAGITPEDID-TGAVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALS 138 (473)
T ss_pred CHHHHHHHHHHHH-HHcCCCHHHCc-cccEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHh
Confidence 7889999999887 67899887632 23788886655554445577777665542 222223578999999984
Q ss_pred ----cceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhH
Q 008119 284 ----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGED 320 (577)
Q Consensus 284 ----~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~d 320 (577)
.+-+=+|||.++|.++-..+|.++..+ .+++||+.
T Consensus 139 ~~~~~~V~NiDIGGGTtN~avf~~G~v~~T~--cl~IGGRL 177 (473)
T PF06277_consen 139 KEHHTVVANIDIGGGTTNIAVFDNGEVIDTA--CLDIGGRL 177 (473)
T ss_pred hhhCCeEEEEEeCCCceeEEEEECCEEEEEE--EEeeccEE
Confidence 234558999999999999999999554 59999974
No 54
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=92.14 E-value=0.2 Score=52.62 Aligned_cols=70 Identities=21% Similarity=0.275 Sum_probs=50.9
Q ss_pred hcCCceEEecchhhHHhhhcC-----CcceEEEeeCCCeEEEEEeeCCeeec-cCcEEeccchhHHHHHHHHHHHh
Q 008119 262 DLRFASAVVHQEGLAAVFGNG-----LSTACVVNMGAQVTSVICVEDGVALP-NTEKTLPFGGEDISRCLLWTQRH 331 (577)
Q Consensus 262 ~~~~~~v~~~~~~vla~f~~G-----~~tglVVDiG~~~T~V~pV~dG~vi~-~s~~~l~~GG~dit~~L~~lL~~ 331 (577)
.+.+..|.+.+|+++|.|..- ..+.+|||||+.+|.++-|.++.... .+....+.|-..+.+.+.+.|..
T Consensus 137 ~i~I~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 137 TITIKDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp --EEEEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred eEEEeeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 345789999999999988752 35689999999999999888765433 33345688999999999988754
No 55
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=0.92 Score=51.27 Aligned_cols=89 Identities=19% Similarity=0.305 Sum_probs=65.9
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC-------cceEEEeeCCCeEEEEEee--CCe-eec
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-------STACVVNMGAQVTSVICVE--DGV-ALP 308 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~-------~tglVVDiG~~~T~V~pV~--dG~-vi~ 308 (577)
.|+-+|..|+..+ ++.+.-.-...|+..+-++.++.||+.++|. .+-||.|.|+++..|..+. +|. .+.
T Consensus 146 aviTVPa~F~~~Q-r~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vk 224 (620)
T KOG0101|consen 146 AVVTVPAYFNDSQ-RAATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVK 224 (620)
T ss_pred EEEEecCCcCHHH-HHHHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhh
Confidence 4666666666554 3455556667889999999999999988874 3459999999999998885 453 233
Q ss_pred cCcEEeccchhHHHHHHHHH
Q 008119 309 NTEKTLPFGGEDISRCLLWT 328 (577)
Q Consensus 309 ~s~~~l~~GG~dit~~L~~l 328 (577)
....-.++||.++++.|...
T Consensus 225 at~gd~~lGGedf~~~l~~h 244 (620)
T KOG0101|consen 225 ATAGDTHLGGEDFDNKLVNH 244 (620)
T ss_pred hhcccccccchhhhHHHHHH
Confidence 33445789999998888753
No 56
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=88.81 E-value=2.8 Score=47.55 Aligned_cols=92 Identities=16% Similarity=0.283 Sum_probs=69.2
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC------------cceEEEeeCCCeEEEEEee--CC
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------------STACVVNMGAQVTSVICVE--DG 304 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~------------~tglVVDiG~~~T~V~pV~--dG 304 (577)
|++-+|.-|+..++|.+++.. ...|+.-+-++.+..|++.++|. .+-+.||+||+.++++-+. -|
T Consensus 140 cvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG 218 (727)
T KOG0103|consen 140 CVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKG 218 (727)
T ss_pred eeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccC
Confidence 677788888888777666543 57899999999999999888885 2368899999999887663 34
Q ss_pred e-eeccCcEEeccchhHHHHHHHHHHHh
Q 008119 305 V-ALPNTEKTLPFGGEDISRCLLWTQRH 331 (577)
Q Consensus 305 ~-vi~~s~~~l~~GG~dit~~L~~lL~~ 331 (577)
. -+-.+..--.+||++.++.|.+.+..
T Consensus 219 ~lkvl~ta~D~~lGgr~fDe~L~~hfa~ 246 (727)
T KOG0103|consen 219 KLKVLATAFDRKLGGRDFDEALIDHFAK 246 (727)
T ss_pred cceeeeeecccccccchHHHHHHHHHHH
Confidence 2 22233334589999999999887654
No 57
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=87.88 E-value=3.8 Score=42.99 Aligned_cols=100 Identities=19% Similarity=0.352 Sum_probs=60.4
Q ss_pred EecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecC---CCCChH-H-HHHHHHHHHhhcCC
Q 008119 191 IHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLP---ESFDNR-E-IKEMLSIVLRDLRF 265 (577)
Q Consensus 191 l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~---~~~~~~-~-~r~l~ellfE~~~~ 265 (577)
...|+.+|. +.+...+..++. .+... ..+ .|.+|- |.|..+ + ++.+++.+-+.|+-
T Consensus 27 ~~~plW~~~-------------~~L~~~l~~~~~-~~~~~-~~~----avtMTgELaD~f~~r~~GV~~i~~~~~~~~~~ 87 (318)
T TIGR03123 27 LYCPLWKGN-------------DKLAETLKEISQ-DLSSA-DNV----AVTMTGELADCFEDKAEGVEFILAAVESAFGS 87 (318)
T ss_pred ecCcccCCc-------------hHHHHHHHHHHH-hcCcc-ceE----EEEeehhhhhhhcCHHHHHHHHHHHHHHhcCC
Confidence 556777753 456666666663 44321 223 677764 345433 3 55577777777755
Q ss_pred ceEEecchh-hH---------------------HhhhcCCcceEEEeeCCCeEEEEEeeCCeeecc
Q 008119 266 ASAVVHQEG-LA---------------------AVFGNGLSTACVVNMGAQVTSVICVEDGVALPN 309 (577)
Q Consensus 266 ~~v~~~~~~-vl---------------------a~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~ 309 (577)
+-.++.... ++ +.++.....++++|||..+|.|++|.+|.+...
T Consensus 88 ~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~la~~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 88 PVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLIAKRIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred CeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHHHhcCCCEEEEEcCccceeeEEecCCEeeee
Confidence 322222211 11 112233578999999999999999999988754
No 58
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=86.13 E-value=5.2 Score=40.92 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=62.6
Q ss_pred HHHHHHHHhhcCCceEEecchhhHHhhhcCC----cc-eEEEeeCCCeEEEEEee-CCeeeccCcEEeccchhHHHHHHH
Q 008119 253 KEMLSIVLRDLRFASAVVHQEGLAAVFGNGL----ST-ACVVNMGAQVTSVICVE-DGVALPNTEKTLPFGGEDISRCLL 326 (577)
Q Consensus 253 r~l~ellfE~~~~~~v~~~~~~vla~f~~G~----~t-glVVDiG~~~T~V~pV~-dG~vi~~s~~~l~~GG~dit~~L~ 326 (577)
+.+++.|=+++|++.-.-.-++-+|..|+=. .. -.|+|+|+++|..+-+. ||.+. .+.+-=+|+-+|-.+.
T Consensus 98 ~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~---~iHlAGAG~mVTmlI~ 174 (332)
T PF08841_consen 98 QMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT---AIHLAGAGNMVTMLIN 174 (332)
T ss_dssp HHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE---EEEEE-SHHHHHHHHH
T ss_pred HHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE---EEEecCCchhhHHHHH
Confidence 3578888899999999999999999999844 33 47899999999988885 56544 2456667888887776
Q ss_pred HHHHhcCCCCCcccccccccchHHHHHHHHHH
Q 008119 327 WTQRHHQTWPQIRTDILTKAMDLLMLNRIKES 358 (577)
Q Consensus 327 ~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~ 358 (577)
.-| | -.|+.++|+||.-
T Consensus 175 sEL---G------------l~d~~lAE~IKky 191 (332)
T PF08841_consen 175 SEL---G------------LEDRELAEDIKKY 191 (332)
T ss_dssp HHC---T-------------S-HHHHHHHHHS
T ss_pred Hhh---C------------CCCHHHHHHhhhc
Confidence 543 2 1367899999954
No 59
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=86.07 E-value=1.6 Score=44.95 Aligned_cols=70 Identities=17% Similarity=0.325 Sum_probs=47.4
Q ss_pred HHHHHHHhhcCCceEEecch---hhHHhhh----c-CCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHH
Q 008119 254 EMLSIVLRDLRFASAVVHQE---GLAAVFG----N-GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 325 (577)
Q Consensus 254 ~l~ellfE~~~~~~v~~~~~---~vla~f~----~-G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L 325 (577)
++++.+.+..|++ +-++.. +-++..| . ...+++|||+|.++|.++.+.+|.+.. ...+++|.-.+++.+
T Consensus 75 ~~~~~i~~~tGi~-i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 75 EFLDRIKKETGID-IEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVVF--SQSLPLGAVRLTERF 151 (285)
T ss_dssp HHHHHHHHHHSS--EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEEE--EEEES--HHHHHHHH
T ss_pred HHHHHHHHHhCCc-eEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeeeE--eeeeehHHHHHHHHH
Confidence 3667777777765 333332 2222222 2 456799999999999999999998884 468999999988877
Q ss_pred H
Q 008119 326 L 326 (577)
Q Consensus 326 ~ 326 (577)
.
T Consensus 152 ~ 152 (285)
T PF02541_consen 152 F 152 (285)
T ss_dssp S
T ss_pred h
Confidence 4
No 60
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=86.06 E-value=3.2 Score=36.87 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=40.2
Q ss_pred EEEeeCCCeEEEEEeeCCeeeccCcEEeccc--------hhHHH--HHHHHHHHhcCCCCCcccccccccchHHHHHHH-
Q 008119 287 CVVNMGAQVTSVICVEDGVALPNTEKTLPFG--------GEDIS--RCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRI- 355 (577)
Q Consensus 287 lVVDiG~~~T~V~pV~dG~vi~~s~~~l~~G--------G~dit--~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~L- 355 (577)
++||+|+++|.++-..+|.... ...+++| |.+|| +.+.+-++.. ...+|++
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a----------------~~~AE~~~ 63 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKIA----------------IEEAERLA 63 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT------------------HHHHHHH-
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHHH----------------HHHHHHHh
Confidence 7899999999999888876664 5679999 99999 8887766421 2457777
Q ss_pred HHHccccc
Q 008119 356 KESYCEIK 363 (577)
Q Consensus 356 Ke~~c~v~ 363 (577)
|.++..+.
T Consensus 64 k~~i~~v~ 71 (120)
T PF14450_consen 64 KCEIGSVY 71 (120)
T ss_dssp HHHH--S-
T ss_pred CCeeeEEE
Confidence 77765443
No 61
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=82.21 E-value=1.6 Score=45.16 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=23.2
Q ss_pred Hhh-hcCCcceEEEeeCCCeEEEEEeeCCeeecc
Q 008119 277 AVF-GNGLSTACVVNMGAQVTSVICVEDGVALPN 309 (577)
Q Consensus 277 a~f-~~G~~tglVVDiG~~~T~V~pV~dG~vi~~ 309 (577)
+++ ..|..++++||||..+|.|++|.||.+...
T Consensus 69 a~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~~ 102 (290)
T PF01968_consen 69 AAARLTGLENAIVVDMGGTTTDIALIKDGRPEIS 102 (290)
T ss_dssp HHH--HT-SSEEEEEE-SS-EEEEEEETTEE---
T ss_pred hhhhcCCCCCEEEEeCCCCEEEEEEEECCeeecc
Confidence 445 557789999999999999999999998643
No 62
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=72.07 E-value=28 Score=38.89 Aligned_cols=90 Identities=22% Similarity=0.304 Sum_probs=63.7
Q ss_pred EEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCCc-----ceEEEeeCCCeEEEEEe--eCCeee-ccCc
Q 008119 240 ILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICV--EDGVAL-PNTE 311 (577)
Q Consensus 240 vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~~-----tglVVDiG~~~T~V~pV--~dG~vi-~~s~ 311 (577)
|+-+|.-|+.. .|+.+.-+..-.|...+-+++++-+|+.++|.. .-.|-|+|.++..|.-. ++|... ..+-
T Consensus 164 vvtvpAyfnds-qRqaTkdag~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksTn 242 (640)
T KOG0102|consen 164 VITVPAYFNDS-QRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTN 242 (640)
T ss_pred eeccHHHHhHH-HHHHhHhhhhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEecc
Confidence 44444444443 355666666677888899999999999888863 35899999987766543 577533 2333
Q ss_pred EEeccchhHHHHHHHHHHH
Q 008119 312 KTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 312 ~~l~~GG~dit~~L~~lL~ 330 (577)
.-.-.||.|++.++..++-
T Consensus 243 gdtflggedfd~~~~~~~v 261 (640)
T KOG0102|consen 243 GDTHLGGEDFDNALVRFIV 261 (640)
T ss_pred CccccChhHHHHHHHHHHH
Confidence 4567899999999987664
No 63
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=69.84 E-value=15 Score=41.15 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=33.1
Q ss_pred ceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHH
Q 008119 285 TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 325 (577)
Q Consensus 285 tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L 325 (577)
.++|||||.++|.++.+.+|.+. ....+++|.-.+++.+
T Consensus 133 ~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl~e~f 171 (496)
T PRK11031 133 QRLVVDIGGASTELVTGTGAQAT--SLFSLSMGCVTWLERY 171 (496)
T ss_pred CEEEEEecCCeeeEEEecCCcee--eeeEEeccchHHHHHh
Confidence 58999999999999999988876 3468999998887654
No 64
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=67.51 E-value=7.1 Score=40.53 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=34.5
Q ss_pred ceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHH
Q 008119 285 TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 326 (577)
Q Consensus 285 tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~ 326 (577)
.++|||+|.++|.++.+.+|.++ ....+++|.-.+++.+.
T Consensus 126 ~~~v~DiGGGSte~~~~~~~~~~--~~~Sl~lG~vrl~e~f~ 165 (300)
T TIGR03706 126 DGLVVDIGGGSTELILGKDFEPG--EGVSLPLGCVRLTEQFF 165 (300)
T ss_pred CcEEEEecCCeEEEEEecCCCEe--EEEEEccceEEhHHhhC
Confidence 46999999999999999988776 34689999999998764
No 65
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=57.91 E-value=8.4 Score=42.92 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=32.8
Q ss_pred CcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHH
Q 008119 283 LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 326 (577)
Q Consensus 283 ~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~ 326 (577)
...+||+|||.++|.++-+.+..+. ....+++|.-.+|+.+.
T Consensus 128 ~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~G~v~lt~~~~ 169 (492)
T COG0248 128 KGDGLVIDIGGGSTELVLGDNFEIG--LLISLPLGCVRLTERFF 169 (492)
T ss_pred CCCEEEEEecCCeEEEEEecCCccc--eeEEeecceEEeehhhc
Confidence 5679999999999999988766555 34678888777776654
No 66
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=56.08 E-value=35 Score=35.83 Aligned_cols=107 Identities=20% Similarity=0.177 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHHHHHHHHHHH---hhcCCceEEecchhhHHhhhcCC----
Q 008119 211 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVL---RDLRFASAVVHQEGLAAVFGNGL---- 283 (577)
Q Consensus 211 ~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~~r~l~ellf---E~~~~~~v~~~~~~vla~f~~G~---- 283 (577)
+-+.++.+...-+ ..-|+.|+.-. ..+|+++-..-.++..+..+..|- -+|=+...--.-+++-|--|+|.
T Consensus 63 d~~alk~~v~eeY-~~AGi~pesi~-sGAvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~S 140 (473)
T COG4819 63 DEAALKKLVLEEY-QAAGIAPESID-SGAVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLS 140 (473)
T ss_pred cHHHHHHHHHHHH-HHcCCChhccc-cccEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchh
Confidence 5567788877665 46788876532 237888765554443333333333 33334444444567777777774
Q ss_pred ---cc-eEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHH
Q 008119 284 ---ST-ACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDI 321 (577)
Q Consensus 284 ---~t-glVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~di 321 (577)
.| -+=+|||.++|..+-..-|.++..+ .|++||+-|
T Consensus 141 eqr~t~v~NlDIGGGTtN~slFD~Gkv~dTa--CLdiGGRLi 180 (473)
T COG4819 141 EQRLTRVLNLDIGGGTTNYSLFDAGKVSDTA--CLDIGGRLI 180 (473)
T ss_pred hhhceEEEEEeccCCccceeeecccccccce--eeecCcEEE
Confidence 22 3447999999999999899888665 599999854
No 67
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=52.89 E-value=9.1 Score=38.72 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=20.6
Q ss_pred cceEEEeeCCCeEEEEEeeCCe
Q 008119 284 STACVVNMGAQVTSVICVEDGV 305 (577)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~ 305 (577)
.+++.||+|..+|.|+||.+|.
T Consensus 130 dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 130 DSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CceEEEecCCcccceEeecchh
Confidence 4699999999999999999997
No 68
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=52.70 E-value=68 Score=32.11 Aligned_cols=100 Identities=16% Similarity=0.103 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhc----CCcce
Q 008119 211 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGN----GLSTA 286 (577)
Q Consensus 211 ~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~----G~~tg 286 (577)
.|+...+.+..++ +++++++.+.. .+.++ .+.+.- +. |- + ..+.|-++-+-|+ . ...
T Consensus 33 ~~~~~~~~l~~~~-~~~~~~~~~i~---~i~~T--g~~~~~---v~---~~--~----~~~~ei~~~~~g~~~~~~-~~~ 93 (248)
T TIGR00241 33 VIEETARAILEAL-KEAGIGLEPID---KIVAT--GYGRHK---VG---FA--D----KIVTEISCHGKGANYLAP-EAR 93 (248)
T ss_pred CHHHHHHHHHHHH-HHcCCChhhee---EEEEE--CCCccc---cc---cc--C----CceEEhhHHHHHHHHHCC-CCC
Confidence 7888888888887 56666554431 33333 221111 11 11 1 2344544443333 3 234
Q ss_pred EEEeeCCCeEEEEEeeCCeeeccCc-EEeccchhHHHHHHHHHH
Q 008119 287 CVVNMGAQVTSVICVEDGVALPNTE-KTLPFGGEDISRCLLWTQ 329 (577)
Q Consensus 287 lVVDiG~~~T~V~pV~dG~vi~~s~-~~l~~GG~dit~~L~~lL 329 (577)
.|||||++.|.+.-+.+|.+..-.. .....|+..+++.+.+.|
T Consensus 94 ~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l 137 (248)
T TIGR00241 94 GVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRL 137 (248)
T ss_pred EEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHc
Confidence 6999999999999999998762211 235678787887776654
No 69
>PRK10854 exopolyphosphatase; Provisional
Probab=45.56 E-value=22 Score=39.85 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=31.8
Q ss_pred cceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHH
Q 008119 284 STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 325 (577)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L 325 (577)
..++|||||.++|.++-+.+|.+... ..+++|.-.+++.+
T Consensus 137 ~~~lvvDIGGGStEl~~~~~~~~~~~--~S~~lG~vrl~e~f 176 (513)
T PRK10854 137 GRKLVIDIGGGSTELVIGENFEPILV--ESRRMGCVSFAQLY 176 (513)
T ss_pred CCeEEEEeCCCeEEEEEecCCCeeEe--EEEecceeeHHhhh
Confidence 35899999999999999999865533 45688888777744
No 70
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=41.05 E-value=44 Score=33.86 Aligned_cols=46 Identities=33% Similarity=0.344 Sum_probs=37.3
Q ss_pred hhcCCceEEecchhhHHhhhcC-------CcceEEEeeCCCeEEEEEeeCCeee
Q 008119 261 RDLRFASAVVHQEGLAAVFGNG-------LSTACVVNMGAQVTSVICVEDGVAL 307 (577)
Q Consensus 261 E~~~~~~v~~~~~~vla~f~~G-------~~tglVVDiG~~~T~V~pV~dG~vi 307 (577)
...+... ++.+...||.+|+- ....+|||||-+.|-.+-|.+|.+.
T Consensus 138 ~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 138 GGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred ccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 4444444 88999999998874 3468999999999999999999865
No 71
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.30 E-value=52 Score=38.25 Aligned_cols=31 Identities=32% Similarity=0.418 Sum_probs=25.0
Q ss_pred hhhcCCcc--eEEEeeCCCeEEEEEeeCCeeec
Q 008119 278 VFGNGLST--ACVVNMGAQVTSVICVEDGVALP 308 (577)
Q Consensus 278 ~f~~G~~t--glVVDiG~~~T~V~pV~dG~vi~ 308 (577)
+|=+|... ++++|+|..+|.|+-+.+|.+-.
T Consensus 270 a~ltg~~~g~~i~~DmGGTStDva~i~~G~pe~ 302 (674)
T COG0145 270 AYLTGLKAGNAIVFDMGGTSTDVALIIDGEPEI 302 (674)
T ss_pred HHhcccccCCEEEEEcCCcceeeeeeecCcEEe
Confidence 34446666 99999999999999999887553
No 72
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=29.96 E-value=31 Score=35.22 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=22.2
Q ss_pred cCeEEecCCcCCCChHHHHHHHHH
Q 008119 494 CSIQLIGGVALTGGLIPAVEERVL 517 (577)
Q Consensus 494 ~NIvLvGG~S~ipG~~~RLe~eL~ 517 (577)
.+|+++||.++-+|+.+.|+++|.
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~ 236 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQ 236 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhc
Confidence 369999999999999999999984
No 73
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=28.37 E-value=38 Score=35.20 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=32.2
Q ss_pred CHHHHHHHHHhcCCChhhHHHhhcCeEEecCCcCCCChHHHHHHHHHhh
Q 008119 471 GLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHA 519 (577)
Q Consensus 471 gL~eaI~~SI~~c~~~d~r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~ 519 (577)
||+++|.+-+... -.|..+-..|+++||.+.-+|+...|+++|...
T Consensus 221 Gl~~sia~rv~~~---~~~~~i~~~v~~~GGva~N~~l~~al~~~Lg~~ 266 (293)
T TIGR03192 221 AYCQAMAERVVSL---LERIGVEEGFFITGGIAKNPGVVKRIERILGIK 266 (293)
T ss_pred HHHHHHHHHHHHH---hcccCCCCCEEEECcccccHHHHHHHHHHhCCC
Confidence 5555555443221 112345567999999999999999999999654
No 74
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=28.06 E-value=61 Score=32.45 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=22.1
Q ss_pred CeEEecCCcCCCChHHHHHHHHHh
Q 008119 495 SIQLIGGVALTGGLIPAVEERVLH 518 (577)
Q Consensus 495 NIvLvGG~S~ipG~~~RLe~eL~~ 518 (577)
.|+++||++..+++.++|.+.|..
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~lg~ 229 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKLGM 229 (248)
T ss_pred CEEEECccccCHHHHHHHHHHhCC
Confidence 699999999999999999999853
No 75
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=27.58 E-value=33 Score=36.82 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=19.4
Q ss_pred hcCeEEecCCcCCCChHHHHHHHHHh
Q 008119 493 FCSIQLIGGVALTGGLIPAVEERVLH 518 (577)
Q Consensus 493 ~~NIvLvGG~S~ipG~~~RLe~eL~~ 518 (577)
...|+|+|||+.=+-|-++|++++..
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred CceEEEECCCcCCHHHHHHHHhhCCC
Confidence 45799999999888888888887754
No 76
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.07 E-value=96 Score=31.70 Aligned_cols=40 Identities=30% Similarity=0.363 Sum_probs=33.4
Q ss_pred EEecchhhHHhhhcCC----cceEEEeeCCCeEEEEEeeCCeee
Q 008119 268 AVVHQEGLAAVFGNGL----STACVVNMGAQVTSVICVEDGVAL 307 (577)
Q Consensus 268 v~~~~~~vla~f~~G~----~tglVVDiG~~~T~V~pV~dG~vi 307 (577)
+++...-++|.+|+-. .-++|||+|-+.|..+-|.++.+.
T Consensus 207 av~mDskfaav~gal~dpaa~palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPAADPALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred EEEEcchhHhhhhcccCcccCceEEEEccCCceEEEEecCCeEE
Confidence 6778888888888754 358999999999999999888654
No 77
>PRK03011 butyrate kinase; Provisional
Probab=23.94 E-value=45 Score=35.66 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=21.7
Q ss_pred cceEEEeeCCCeEEEEEeeCCeeeccC
Q 008119 284 STACVVNMGAQVTSVICVEDGVALPNT 310 (577)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~vi~~s 310 (577)
.+.+++.+|.+. +++.|.||.++..+
T Consensus 176 ~n~I~~hLGtGi-g~gai~~Gk~idgs 201 (358)
T PRK03011 176 LNLIVAHLGGGI-SVGAHRKGRVIDVN 201 (358)
T ss_pred CcEEEEEeCCCc-eeeEEECCEEEecC
Confidence 378999999875 88899999988654
No 78
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=23.78 E-value=2.9e+02 Score=30.13 Aligned_cols=46 Identities=22% Similarity=0.344 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHhcCCChhhH-HHhhcCeEEecCCcCCCChHHHHHHHHHh
Q 008119 470 IGLAEAVTSSILSTGRIDLQ-RKLFCSIQLIGGVALTGGLIPAVEERVLH 518 (577)
Q Consensus 470 ~gL~eaI~~SI~~c~~~d~r-~~L~~NIvLvGG~S~ipG~~~RLe~eL~~ 518 (577)
.||..+|.+-+... -.+ ..+-..|+++||.++.+|+...|++.|..
T Consensus 335 AGl~~SIa~rv~~~---l~~~~~i~~~VvftGGva~N~gvv~ale~~Lg~ 381 (404)
T TIGR03286 335 AAACHSVAEQVYEQ---QLQEIDVREPVILVGGTSLIEGLVKALGDLLGI 381 (404)
T ss_pred HHHHHHHHHHHHHH---HhhcCCCCCcEEEECChhhhHHHHHHHHHHhCC
Confidence 35666665555420 112 23445599999999999999999999964
No 79
>cd01732 LSm5 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=22.74 E-value=50 Score=27.01 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=10.8
Q ss_pred cCCCEEEEcCCC
Q 008119 16 RGSNLVVINPGS 27 (577)
Q Consensus 16 ~g~~~iVihpGS 27 (577)
||++|++||||.
T Consensus 65 RG~nV~~i~p~~ 76 (76)
T cd01732 65 NGNNICMLVPGG 76 (76)
T ss_pred eCCeEEEEECCC
Confidence 589999999995
No 80
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=22.73 E-value=42 Score=36.31 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.3
Q ss_pred cceEEEeeCCCeEEEEEeeCCeeeccCc
Q 008119 284 STACVVNMGAQVTSVICVEDGVALPNTE 311 (577)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~vi~~s~ 311 (577)
.+-+|..+|.+ +|+|.+.+|.++.-+.
T Consensus 199 ~~lIvaHLG~G-~Sv~A~~~GrsvDtsm 225 (388)
T PF00871_consen 199 LNLIVAHLGSG-ASVCAIKNGRSVDTSM 225 (388)
T ss_dssp -EEEEEEESSS-EEEEEEETTEEEEESB
T ss_pred cCEEEEEeCCC-cEEEEEECCEEEEecC
Confidence 46799999987 7899999999887553
No 81
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=20.48 E-value=67 Score=33.53 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=11.0
Q ss_pred CCC---EEEEcCCCce
Q 008119 17 GSN---LVVINPGSAN 29 (577)
Q Consensus 17 g~~---~iVihpGS~~ 29 (577)
|-+ .||||||+.+
T Consensus 143 G~~~~~~vViHpG~~~ 158 (303)
T PRK02308 143 GIDDSSKINIHVGGAY 158 (303)
T ss_pred CCCCCCEEEECCCccC
Confidence 666 9999999963
Done!