Query 008119
Match_columns 577
No_of_seqs 293 out of 1797
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 18:34:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fo0_A Actin-related protein 8 100.0 3.4E-89 1.2E-93 768.1 29.4 512 5-561 1-590 (593)
2 4am6_A Actin-like protein ARP8 100.0 4.9E-85 1.7E-89 717.3 26.2 497 15-561 37-652 (655)
3 3qb0_A Actin-related protein 4 100.0 1.4E-64 4.8E-69 551.2 26.9 363 172-560 62-497 (498)
4 3dwl_A Actin-related protein 3 100.0 1.8E-64 6.1E-69 544.4 20.4 310 172-561 72-422 (427)
5 2fxu_A Alpha-actin-1, actin, a 100.0 3.4E-58 1.2E-62 488.8 27.1 309 172-561 50-375 (375)
6 1k8k_B ARP2, actin-like protei 100.0 2.6E-59 8.8E-64 500.6 13.1 307 172-558 53-388 (394)
7 1k8k_A ARP3, actin-like protei 100.0 2.7E-54 9.4E-59 464.8 26.0 316 172-563 58-416 (418)
8 1jce_A ROD shape-determining p 99.9 2.1E-24 7.2E-29 225.7 22.9 251 173-517 41-302 (344)
9 3h1q_A Ethanolamine utilizatio 99.6 3.3E-15 1.1E-19 150.5 13.2 140 191-360 58-197 (272)
10 2v7y_A Chaperone protein DNAK; 99.5 7.7E-14 2.6E-18 153.5 12.4 122 239-363 112-246 (509)
11 1dkg_D Molecular chaperone DNA 99.4 7.2E-13 2.4E-17 140.0 13.5 122 239-363 138-277 (383)
12 3qfu_A 78 kDa glucose-regulate 99.4 3.5E-13 1.2E-17 142.7 6.9 91 239-330 156-255 (394)
13 3i33_A Heat shock-related 70 k 99.3 9.4E-13 3.2E-17 140.1 4.4 91 239-330 161-263 (404)
14 2ych_A Competence protein PILM 99.1 7.3E-10 2.5E-14 116.6 13.7 90 256-363 156-252 (377)
15 1yuw_A Heat shock cognate 71 k 98.9 4.1E-09 1.4E-13 116.9 11.1 91 239-330 142-242 (554)
16 4a2a_A Cell division protein F 98.8 7.7E-09 2.6E-13 110.8 10.5 88 256-361 173-265 (419)
17 3d2f_A Heat shock protein homo 98.8 1.2E-08 4.1E-13 115.6 11.1 91 239-330 141-246 (675)
18 2kho_A Heat shock protein 70; 98.8 2.5E-08 8.6E-13 111.7 13.2 121 239-362 138-276 (605)
19 4gni_A Putative heat shock pro 98.8 8.2E-09 2.8E-13 109.9 7.7 110 215-331 135-255 (409)
20 4b9q_A Chaperone protein DNAK; 98.5 4.7E-07 1.6E-11 101.4 14.0 91 239-330 138-241 (605)
21 2fsj_A Hypothetical protein TA 98.5 1.1E-07 3.9E-12 99.1 8.2 138 172-332 78-240 (346)
22 2d0o_A DIOL dehydratase-reacti 98.0 2E-05 7E-10 84.9 11.3 92 251-360 369-465 (610)
23 1nbw_A Glycerol dehydratase re 98.0 1.4E-05 4.7E-10 86.5 9.2 71 272-360 392-467 (607)
24 2zgy_A Plasmid segregation pro 97.3 0.00021 7.4E-09 73.1 6.1 71 261-331 136-212 (320)
25 3js6_A Uncharacterized PARM pr 97.3 0.00036 1.2E-08 72.8 7.1 68 265-332 154-232 (355)
26 4apw_A ALP12; actin-like prote 96.9 0.00092 3.1E-08 68.9 5.7 67 265-331 149-219 (329)
27 1t6c_A Exopolyphosphatase; alp 88.1 1.5 5.3E-05 44.4 9.1 42 283-326 137-178 (315)
28 3mdq_A Exopolyphosphatase; str 81.9 1.4 4.9E-05 44.6 5.3 40 284-325 131-170 (315)
29 3cet_A Conserved archaeal prot 81.8 1.1 3.7E-05 45.8 4.3 25 284-308 127-151 (334)
30 3cer_A Possible exopolyphospha 79.5 1.2 4.3E-05 45.6 4.0 42 284-325 146-191 (343)
31 1u6z_A Exopolyphosphatase; alp 74.9 3.9 0.00014 44.3 6.5 40 285-326 138-177 (513)
32 3hi0_A Putative exopolyphospha 73.3 4.7 0.00016 43.6 6.6 39 284-324 140-178 (508)
33 4ehu_A Activator of 2-hydroxyi 58.7 3.5 0.00012 40.3 1.8 63 267-329 73-140 (276)
34 3aap_A Ectonucleoside triphosp 52.6 12 0.0004 38.5 4.5 37 284-320 140-178 (353)
35 2fsj_A Hypothetical protein TA 40.8 4.2 0.00014 41.5 -1.0 32 20-52 23-54 (346)
36 3js6_A Uncharacterized PARM pr 38.9 2.8 9.7E-05 43.1 -2.7 29 20-50 6-34 (355)
37 4apw_A ALP12; actin-like prote 37.3 11 0.00036 38.2 1.3 24 492-517 278-301 (329)
38 2gup_A ROK family protein; sug 32.5 72 0.0025 30.9 6.6 52 255-309 87-143 (292)
39 2e1z_A Propionate kinase; TDCD 24.8 29 0.001 36.3 2.1 28 284-312 210-237 (415)
40 3cj1_A Ectonucleoside triphosp 23.3 69 0.0024 33.9 4.7 35 284-318 190-225 (456)
41 2qm1_A Glucokinase; alpha-beta 22.7 1.6E+02 0.0054 28.8 7.1 47 261-309 106-159 (326)
42 1g99_A Acetate kinase; alpha/b 21.9 33 0.0011 35.8 1.8 28 284-312 202-229 (408)
43 4ehu_A Activator of 2-hydroxyi 20.7 80 0.0027 30.3 4.3 45 471-518 188-232 (276)
44 2zgy_A Plasmid segregation pro 20.0 23 0.0008 35.2 0.2 22 493-516 273-294 (320)
No 1
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.4e-89 Score=768.09 Aligned_cols=512 Identities=29% Similarity=0.492 Sum_probs=363.7
Q ss_pred cccCchhhHhhcCCC-EEEEcCCCceeeeecCCCCCCCccceeeEEecCCCCccccccccccccc--cchhhhhHHHHHH
Q 008119 5 KTVVPSQLIAERGSN-LVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQV--TTSQHVERERAYD 81 (577)
Q Consensus 5 ~~~~~~~~~~~~g~~-~iVihpGS~~lriG~asd~~P~~ip~~iAr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 81 (577)
++|+|+++.++++++ ||||||||++||||||+|..|++||||||||+++.......+..+.... ..+...+++....
T Consensus 1 ~p~~~~~~~~~~~~~~iIVIdpGS~~~riG~A~d~~P~~iP~~iar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (593)
T 4fo0_A 1 GPLVPESLQEQIQSNFIIVIHPGSTTLRIGRATDTLPASIPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLK 80 (593)
T ss_dssp CCCCCGGGTTTSGGGGEEEEECCSSEEEEEETTCSSCEEEECCEEEECSSTTCCCCBCCSSCCTTTTSTTHHHHHHHHHH
T ss_pred CCCCCCccccccCCCCEEEEeCCCCCeEeeecCCCCCCeeeEEEEEECCCCCCCcccccccccccccccchhhhhhhhHH
Confidence 479999999988765 9999999999999999999999999999999876443333333222111 1122223333333
Q ss_pred HHHhhcCCCcchHhhhcCCCCcccccccccccccccccccccccccccCCCCCCCccccccccccCCcccccCCCCCccc
Q 008119 82 VIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDI 161 (577)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~~e~~~~~~~~~~ 161 (577)
.+.+.++.. +..+++|+. ++++|++++||++.+||.+++++++.+
T Consensus 81 ~~~~~~~~~----------------------------------~~~~~~r~~-~~s~~~~~~~n~~~~p~~i~~~~~~~~ 125 (593)
T 4fo0_A 81 MVDQAIWSK----------------------------------KMSNGTRRI-PVSPEQARSYNKQMRPAILDHCSGNKW 125 (593)
T ss_dssp HHHHHHHHS----------------------------------CCTTSCCCC-CCCHHHHHHHHTTCCCEEEESSCSCCC
T ss_pred HHHHHHHHH----------------------------------hhhcccccC-CCcHHHhhhhhccCCCcccCCCCcccc
Confidence 222222110 111233334 599999999999999999987755543
Q ss_pred cccccccccCCceEEccccccCCCCCCceEecceeCCeeeec--CCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccce
Q 008119 162 KELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNIS--QHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSA 239 (577)
Q Consensus 162 ~~~~~~~~~~~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~--~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~ 239 (577)
.+ ....+++|||+||+++++++.|.|+|||+||.||++ +|.|++.+|+|||+||+|+|+++|+|++++.+.| +
T Consensus 126 ~~----~~~~~~~~vG~~al~~~~~~~~~l~~Pi~~G~~n~~~~~~~s~~~~wdd~e~iw~~~~~~~L~i~~~d~~~~-p 200 (593)
T 4fo0_A 126 TN----TSHHPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAVLADIEVIWSHAIQKYLEIPLKDLKYY-R 200 (593)
T ss_dssp CC----CTTCCSEEETHHHHTSCTTSSEEEECSEETTEECCCSSTTCSHHHHHHHHHHHHHHHHHHTSCCCGGGGGGC-E
T ss_pred cc----ccccccccccHHHhhcCCcccceEecCcccCccccccCCccchhcCHHHHHHHHHHHHHHhcCCCchhccCC-c
Confidence 22 234578999999999988889999999999999997 4559999999999999999999999999886655 5
Q ss_pred EEecCCCCChH-HHHHHHHHHHhhcCCceEEecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccch
Q 008119 240 ILVLPESFDNR-EIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGG 318 (577)
Q Consensus 240 vlvi~~~~~~~-~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG 318 (577)
||+++++++++ ++++|+++|||+|+||+++++++++||+||+|++||||||||++.|+|+||+||+++.++++++++||
T Consensus 201 vlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~rl~~GG 280 (593)
T 4fo0_A 201 CILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCCVEDGVSHRNTRLCLAYGG 280 (593)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCSEEEEEEECSSCEEEEEEESSCBCGGGCEEESCCH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCCceEEEEeCCCceeeeeeECCEEehhheEEecccH
Confidence 66666666555 44559999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCC-CceeEee---eecc
Q 008119 319 EDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLI---ALNV 394 (577)
Q Consensus 319 ~dit~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~-~~k~~~~---~~~~ 394 (577)
++||++|.++|+.++ +| +.++++.+..|++++++|||++|||+.+...... ..+....|.+ +.++.++ +.+.
T Consensus 281 ~~lt~~L~~lL~~~~-~~-~~~~~~~~~~d~~~v~~iKe~~c~v~~d~~~~~~--~~~~~~~p~~~~~~~~~~~~~E~~~ 356 (593)
T 4fo0_A 281 SDVSRCFYWLMQRAG-FP-YRECQLTNKMDCLLLQHLKETFCHLDQDISGLQD--HEFQIRHPDSPALLYQFRLGDEKLQ 356 (593)
T ss_dssp HHHHHHHHHHHHHTT-CS-CTTCCTTCHHHHHHHHHHHHHHCBCCTTCCSCEE--EEEEECCTTSCEEEEEEEECTHHHH
T ss_pred HHHHHHHHHHHHhcC-CC-ccccccccchhHHHHHHHHHHhcccccchHHhhh--hhhhcccCCCCceeeEEeccchhhc
Confidence 999999999998775 33 5667777889999999999999999875432211 1111123433 3444443 4678
Q ss_pred CCCcccCCcccCCCCCCCC---CCCCCCCc---------------------------ccccCCCcccccC-CCcCCCCCC
Q 008119 395 PPMGLFYPKLLVPDVYPPP---PRSWFNDY---------------------------EDMLEDTWHTDFP-RRSDISDNF 443 (577)
Q Consensus 395 aP~~lF~p~i~~~e~~~~p---~~~~~~~~---------------------------ed~~~d~~~~~~~-er~~~~E~l 443 (577)
+|+++|+|.++..+..... .+. ..+. ....+++....++ +|+.++|.+
T Consensus 357 ~p~~lf~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~e~~~~pe~l 435 (593)
T 4fo0_A 357 APMALFYPATFGIVGQKMTTLQHRS-QGDPEDPHDEHYLLATQSKQEQSAKATADRKSASKPIGFEGDLRGQSSDLPERL 435 (593)
T ss_dssp HHHTTTSGGGGCCCSSCCEEECC---------------------------------------------------------
T ss_pred CchhhcChhhhcccccccchhhhhc-ccCcccchhhhhhhhcccchhhhhhcccccccccCCCCcccccccccccCchhc
Confidence 9999999998864321100 000 0000 0123345555565 799999999
Q ss_pred CCC-cCCCCCC-------CCCCCcc--------CCCCCCccCCCHHHHHHHHHhcCCChhhHHHhhcCeEEecCCcCCCC
Q 008119 444 YPG-INVGLPM-------WESYPVL--------TTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGG 507 (577)
Q Consensus 444 fp~-~~~~~~~-------~~~~~~~--------~~~~~~~~~~gL~eaI~~SI~~c~~~d~r~~L~~NIvLvGG~S~ipG 507 (577)
|.+ ...+... ....... .......+..||+++|++||.+|+..|+|++||+|||||||+|+|||
T Consensus 436 f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~~aI~~SI~~~~~~D~r~~L~~NIvltGG~s~~pG 515 (593)
T 4fo0_A 436 HSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFHK 515 (593)
T ss_dssp -----------------------------------CHHHHSCCCHHHHHHHHHHTCSSHHHHHHHHHEEEEESSTTCCBT
T ss_pred cCcccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhCCcHHHHHHHhCCEEEEchhhchhc
Confidence 843 2111100 0000000 00011234579999999999999436999999999999999999999
Q ss_pred hHHHHHHHHHhhCCCCC-----cceEEE----------------EeeecCCCCceeEeHHHHhhcCCCceecccc
Q 008119 508 LIPAVEERVLHAIPSNE-----AIDMVE----------------VLGILDFGRDAWIHREDWIRNGIHIGSGRKY 561 (577)
Q Consensus 508 ~~~RLe~eL~~~~P~~~-----~v~~v~----------------vlasL~sf~~~wItr~EYeE~G~~il~rk~~ 561 (577)
|.+||++||..++|+.+ ++++++ +||+|++|+++||||+||+|+|.+||+|||.
T Consensus 516 f~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~~~aW~GgSilasL~~f~~~wItk~EYeE~G~~il~~kc~ 590 (593)
T 4fo0_A 516 AQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRMLRERAA 590 (593)
T ss_dssp HHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTTTHHHHHHHHHHHCGGGGGTCEEHHHHHHHTTHHHHHHCS
T ss_pred HHHHHHHHHHHhCcchhccccceEEEECCCCCCCCceeeehhhHHHhcCccHHHeeECHHHHHhhCcHHHhhcCC
Confidence 99999999999998653 345442 2899999999999999999999999999994
No 2
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=100.00 E-value=4.9e-85 Score=717.25 Aligned_cols=497 Identities=21% Similarity=0.357 Sum_probs=367.0
Q ss_pred hcCCCEEEEcCCCceeeeecCCCCCCCccceeeEEecCCCCccccccccccccccchhhhhHHHHHHHHHhhcCCCcchH
Q 008119 15 ERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQHVERERAYDVIASLMKIPFLDE 94 (577)
Q Consensus 15 ~~g~~~iVihpGS~~lriG~asd~~P~~ip~~iAr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (577)
..+++||||||||+|||||||||++|++||||||||++......... ...+....+..++++..+.+|++.||..
T Consensus 37 ~~~~~~IVIHpGS~~lRIG~AsD~~P~~ip~~iA~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~~~~~~k~r---- 111 (655)
T 4am6_A 37 NDPTATIVIHPGSNSIKIGFPKDDHPVVVPNCVAVPKKWLDLENSEH-VENVCLQREQSEEFNNIKSEMEKNFRER---- 111 (655)
T ss_dssp CCGGGEEEEECCSSEEEEECTTSSSCEEEESCEEEEGGGSCCSSSCC-CCTTCCCSCCCHHHHHHHHHHHHHHHHH----
T ss_pred cCCCCeEEEcCCCcceeeeecCCCCCcccceeEEeccccccCCCccc-cCccccchhhhHHHHHHHHHHHHHHHHH----
Confidence 45799999999999999999999999999999999976521110000 0000011234467777887777776532
Q ss_pred hhhcCCCCcccccccccccccccccccccccccccCCCCCCCccccccccccCCcccccCCCCCccccccccccccCCce
Q 008119 95 EVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREF 174 (577)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 174 (577)
++.+|||+.| |++|+|++||++.+||.|++|||+...+|... .+++
T Consensus 112 ------------------------------mr~~k~r~~p-n~~e~~~~fN~~~~Pe~i~~~nDp~~~~W~~~---~~d~ 157 (655)
T 4am6_A 112 ------------------------------MRYYKRKVPG-NAHEQVVSFNENSKPEIISEKNDPSPIEWIFD---DSKL 157 (655)
T ss_dssp ------------------------------HHHHSCCCST-TCCSSTTCCEEEECSCCCCSSSSCCSCCCBCC---TTSC
T ss_pred ------------------------------HhhcCCCCCC-CCHHHHHHhcCCCCCeECCCCCCccccccccC---CCCE
Confidence 4456667665 99999999999999999999987776655322 2789
Q ss_pred EEccccccCCCCCCceEecceeCCeeeec--CCCCcccCHHHHHHHHHHHHh-hhcCCCCC---CCCccceEEecCCCCC
Q 008119 175 ICGEEALRVSPTEPYCIHRPIRRGHLNIS--QHYPMQQVLEDLYAIWDWILT-EKLHIPRS---ERNLYSAILVLPESFD 248 (577)
Q Consensus 175 ~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~--~~~s~~~~~~d~e~i~~~~~~-~~L~i~~~---~~~~~~~vlvi~~~~~ 248 (577)
+||+||+.+. ++.+.++|||++|.|+.+ +|.|++.+|+++|.||+|+|. ++|+++++ ++ +||+++++++
T Consensus 158 ~VGdEA~~~~-r~~l~l~~PI~~GvI~~~s~Dy~s~q~~WD~mE~Iw~y~f~~~~L~V~p~~~~e~----pVLLTEPpln 232 (655)
T 4am6_A 158 YYGSDALRCV-DEKFVIRKPFRGGSFNVKSPYYKSLAELISDVTKLLEHALNSETLNVKPTKFNQY----KVVLVIPDIF 232 (655)
T ss_dssp EEHHHHHTBC-TTTEEEECSEETTEECTTCSSCSSHHHHHHHHHHHHHHHHBSSSCBCCGGGGGGC----EEEEEECTTC
T ss_pred EEehHHhhCC-ccCeEEeccccCCEecccCCccccccccHHHHHHHHHHHhccccccccccccCCC----cEEEEeCCCC
Confidence 9999999864 368999999999999854 667899999999999999997 38999886 45 8999999988
Q ss_pred hHHHHH-HHHHHHhhcCCceEEecchhhHHhhhcC-CcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHH
Q 008119 249 NREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNG-LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 326 (577)
Q Consensus 249 ~~~~r~-l~ellfE~~~~~~v~~~~~~vla~f~~G-~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~ 326 (577)
+...|+ |+++|||.||||+++++++++||+||+| .++|||||+|++.|+|+||++|+++.+++.++++||+++|++|.
T Consensus 233 p~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl~ttGLVVDiG~g~T~VvPV~eG~vl~~ai~rL~iGG~dLT~yL~ 312 (655)
T 4am6_A 233 KKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGISTSTCVVNIGAAETRIACVDEGTVLEHSAITLDYGGDDITRLFA 312 (655)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCCSSCEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCCCCceEEEcCCCceEEEEEEeCCEEEhhheeeecchHHHHHHHHH
Confidence 777775 9999999999999999999999999999 68999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcccccccccchHHHHHHHHHHcccccCCcccc-cchhccccCCCCCCCceeEee---eeccCCCcccCC
Q 008119 327 WTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDA-VAVVHSYEDGMPPGSHKTRLI---ALNVPPMGLFYP 402 (577)
Q Consensus 327 ~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~-~~~~~~~~~~~p~~~~k~~~~---~~~~aP~~lF~p 402 (577)
++|+.++. | |++++|.+..+++++++|||++|||+..++.. ...++.+.++.+ +.||.++ ++++||++||+|
T Consensus 313 kLL~~rgy-p-y~~~~f~t~~e~eiVrdIKEk~CyVs~~Di~~q~~~f~~r~P~~~--~~ky~i~vgdErflaPe~lF~P 388 (655)
T 4am6_A 313 LFLLQSDF-P-LQDWKIDSKHGWLLAERLKKNFTTFQDADVAVQLYNFMNRSPNQP--TEKYEFKLFDEVMLAPLALFFP 388 (655)
T ss_dssp HHHHHTTC-S-CCSCCTTSHHHHHHHHHHHHHHCCCCGGGCCSEEEEEEECCSSSC--EEEEEEEESSHHHHHHHGGGST
T ss_pred HHHHHcCC-C-ccccCCCCcchHHHHHHHHHheEEEcccchhhhhhcceeccCCCC--CcceEEEECCeehhCchhcCCh
Confidence 99988763 2 35667888889999999999999997655532 122233333332 4566664 567999999999
Q ss_pred cccCCCCCCCCC----CCCCC----CcccccCCCcccccCCCcCCCCCCCCCcCCC--CCC-----------CCCCCccC
Q 008119 403 KLLVPDVYPPPP----RSWFN----DYEDMLEDTWHTDFPRRSDISDNFYPGINVG--LPM-----------WESYPVLT 461 (577)
Q Consensus 403 ~i~~~e~~~~p~----~~~~~----~~ed~~~d~~~~~~~er~~~~E~lfp~~~~~--~~~-----------~~~~~~~~ 461 (577)
.++..+.+.... +.+++ -|++.++|..+.+-... .....+...... ++. .+..+...
T Consensus 389 ei~~~~~~~~~~~~~~~~~~~~s~d~y~~~~nd~~S~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (655)
T 4am6_A 389 QIFKLIRTSSHKNSSLEFQLPESRDLFTNELNDWNSLSQFES--KEGNLYCDLNDDLKILNRILDAHNIIDQLQDKPENY 466 (655)
T ss_dssp HHHHHTSCCCCCCHHHHTTSCCCBCTTTCCBCSCCCHHHHHH--HTTCCGGGCCSHHHHHHHHHHHHHHHHHHHTSSCSC
T ss_pred hhcccccccccccchhhhhcCccccccCCCCCCccchhHHhh--hccccCCCCccHhhhhhhhhcccccccccccCCccc
Confidence 999765433211 12222 24444444332210000 000000000000 000 00000000
Q ss_pred CCCCCccCCCHHHHHHHHHhcCCC-hhhHH--HhhcCeEEecCCcCCCChHHHHHHHHHhhCCCCC--------------
Q 008119 462 TKPKKEEKIGLAEAVTSSILSTGR-IDLQR--KLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNE-------------- 524 (577)
Q Consensus 462 ~~~~~~~~~gL~eaI~~SI~~c~~-~d~r~--~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~P~~~-------------- 524 (577)
.........||++||++||.+|+. .|.++ +||+||+||||||+||||...|++||....|.-.
T Consensus 467 ~~~~~~~~~pLdkAIi~SIt~a~~~~d~~k~~~~y~nilivGggski~g~~~~L~dri~i~rp~~~s~~~~~~~~~~~~~ 546 (655)
T 4am6_A 467 GNTLKENFAPLEKAIVQSIANASITADVTRMNSFYSNILIVGGSSKIPALDFILTDRINIWRPSLLSSASFPQFYKKLTK 546 (655)
T ss_dssp SCSSCCCCCCHHHHHHHHHHHHHHTSCGGGHHHHHTCEEEESTTCCCTTHHHHHHHHHHHHSCSTTTBTTHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHhhhccccHHHHHHHhhcEEEEcCcccCccHHHHHHHHHHhhCcccccccccHHHHHHHHH
Confidence 001113468999999999995432 36664 9999999999999999999999999998666311
Q ss_pred -----------------------------------------------------cceEEE----------------Eeeec
Q 008119 525 -----------------------------------------------------AIDMVE----------------VLGIL 535 (577)
Q Consensus 525 -----------------------------------------------------~v~~v~----------------vlasL 535 (577)
+|++++ |||+|
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~V~~~p~~~d~~~~~W~GgSvla~l 626 (655)
T 4am6_A 547 EIKDLEGHYVNAPDKTEDENKQILQAQIKEKIVEELEEQHQNIEHQNGNEHIFPVSIIPPPRDMNPALIIWKGASVLAQI 626 (655)
T ss_dssp HHHHHHSTTCSCCSSSCCSSTTSTTHHHHHHHHHHHHHHHHHHHHTTSCCCBCCCCEECCCTTSCGGGHHHHHHHHHTTS
T ss_pred hhhhhhhhhccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhccccCCceeeEEeCCccccCcceeEEecceeeeec
Confidence 123332 29999
Q ss_pred CCCCceeEeHHHHhhcCCCceecccc
Q 008119 536 DFGRDAWIHREDWIRNGIHIGSGRKY 561 (577)
Q Consensus 536 ~sf~~~wItr~EYeE~G~~il~rk~~ 561 (577)
++|+++||||+||+|+|.+|+++||+
T Consensus 627 ~~f~e~wIt~~Eyde~G~~il~~k~~ 652 (655)
T 4am6_A 627 KLVEELFITNSDWDVHGSRILQYKCI 652 (655)
T ss_dssp HHHHHHCEEHHHHHHHGGGGGGTSCS
T ss_pred ccHhheeecHHHHhhhcchheEeccc
Confidence 99999999999999999999999994
No 3
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-64 Score=551.17 Aligned_cols=363 Identities=20% Similarity=0.283 Sum_probs=263.7
Q ss_pred CceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHH
Q 008119 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~ 251 (577)
+.++||+++.... +..+.++|||++|.|. ||+++|.||+|+|.+.|++.+.++. +|||+++++++..
T Consensus 62 ~~~~vG~e~~~~~-r~~l~l~~Pi~~GvI~---------dwd~~E~iw~~~f~~~L~v~p~~~~---pvlltep~~n~~~ 128 (498)
T 3qb0_A 62 NKKIFSEQSIGIP-RKDYELKPIIENGLVI---------DWDTAQEQWQWALQNELYLNSNSGI---PALLTEPVWNSTE 128 (498)
T ss_dssp CCEECCTTGGGSC-CTTEEEEESEETTEES---------CHHHHHHHHHHHHHHTSCCSCCTTC---CEEEEECTTCCHH
T ss_pred ccEEEecHHHhcC-cCceEEeccCcCCEEc---------cHHHHHHHHHHHHHhhhCCCcccCC---ceEEEeCCCCcHH
Confidence 3467899754432 4689999999999998 9999999999999888999887762 6999999999887
Q ss_pred HHH-HHHHHHhhcCCceEEecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHH
Q 008119 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 252 ~r~-l~ellfE~~~~~~v~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~ 330 (577)
.|+ |+|++||.|||++++++.+++||+||+|+++|||||+|++.|+|+||++|+++.+++.++++||++||++|.++|+
T Consensus 129 ~Re~~~eilFE~f~vpav~l~~~~vlalya~G~~tglVVDiG~g~T~vvPI~~G~~l~~ai~rl~vgG~~lt~~L~~lL~ 208 (498)
T 3qb0_A 129 NRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALE 208 (498)
T ss_dssp HHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCCCeEeecchHHHHHHHcCCCeEEEEEcCCCcEEEEEEeCCEEccccceeccccHHHHHHHHHHHHH
Confidence 775 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCcc-----------ccccc------ccc-hHHHHHHHHHHcccccCC-ccccc------chhccccCCCCCCCc
Q 008119 331 HHQTWPQIR-----------TDILT------KAM-DLLMLNRIKESYCEIKEG-EIDAV------AVVHSYEDGMPPGSH 385 (577)
Q Consensus 331 ~~~~~p~~~-----------~~~l~------~~~-d~~l~e~LKe~~c~v~~~-~~~~~------~~~~~~~~~~p~~~~ 385 (577)
.++..|.|. .+.++ +.. +.+++++|||++|+|+.+ +.+.. ...+.|+ +|++..
T Consensus 209 ~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~iKE~~c~Va~~~~~~~~~~~~~~~~~~~ye--LPDG~~ 286 (498)
T 3qb0_A 209 PKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIE--SPWNEE 286 (498)
T ss_dssp TSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHHHHHTHHHHHHHHTCCCCSSCHHHHHHHHHHTCCCEEEE--CSSSCE
T ss_pred hccccchhhhcccccccccccCCCccCccHHHHHHHHHHHHHHHHhhEEecCCccHhHHhhhccCcCceEEE--CCCCCE
Confidence 654434331 11111 112 456999999999999874 22211 1123455 777642
Q ss_pred eeEe-ee-eccCCCcccCCcccCCCCCCCCCCCCCCCcccccCCCccccc-CCCcCCCCCCCC-CcCCCCCC--CCCCCc
Q 008119 386 KTRL-IA-LNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDF-PRRSDISDNFYP-GINVGLPM--WESYPV 459 (577)
Q Consensus 386 k~~~-~~-~~~aP~~lF~p~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~-~er~~~~E~lfp-~~~~~~~~--~~~~~~ 459 (577)
..+ .+ .+.+|+.||+|.++...... |.. .+-.++...-.+ +.+..- +.... .......+ .+..+.
T Consensus 287 -i~lg~E~Rf~~pE~LF~P~~~g~~~~~-~~~------~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 357 (498)
T 3qb0_A 287 -IVFDNETRYGFAEELFLPKEDDIPANW-PRS------NSGVVKTWRNDYVPLKRTK-PSGVNKSDKKVTPTEEKEQEAV 357 (498)
T ss_dssp -EEECHHHHHHHHHTTTSCCGGGSCTTS-CCC------SSSCCCCCSCCCCCCCBCC-----------------------
T ss_pred -EEECchHhhhCchhhCCHhHcCCcccc-ccc------ccccccccccccccccccc-cccccccccccccccccccccc
Confidence 233 34 56788888888776421100 000 000011111111 100000 00000 00000000 000000
Q ss_pred ----------------c---C-----CCCCCccCCCHHHHHHHHHhcCCChhhHHHhhcCeEEecCCcCCCChHHHHHHH
Q 008119 460 ----------------L---T-----TKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEER 515 (577)
Q Consensus 460 ----------------~---~-----~~~~~~~~~gL~eaI~~SI~~c~~~d~r~~L~~NIvLvGG~S~ipG~~~RLe~e 515 (577)
. + ......+..||+++|++||++| |.|+|+.||+||+|+||+|++|||.+||++|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~c-d~d~r~~L~~nIvLsGGst~~pGf~~Rl~~E 436 (498)
T 3qb0_A 358 SKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSS-DVDLRATLAHNVVLTGGTSSIPGLSDRLMTE 436 (498)
T ss_dssp -------------------------------CCSCCHHHHHHHHHHTS-CTTTHHHHHTTEEEESGGGGSTTHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccCCCchHHHHHHHHhC-CHHHHHHHhcCEEEeCCccCchhHHHHHHHH
Confidence 0 0 0000126789999999999999 9999999999999999999999999999999
Q ss_pred HHhhCCCCCcceEEEE----------------eeecCCCCceeEeHHHHhhcCC-Cceeccc
Q 008119 516 VLHAIPSNEAIDMVEV----------------LGILDFGRDAWIHREDWIRNGI-HIGSGRK 560 (577)
Q Consensus 516 L~~~~P~~~~v~~v~v----------------lasL~sf~~~wItr~EYeE~G~-~il~rk~ 560 (577)
|..++| .+++++++. ||+|++|+++||||+||+|.|+ +|++|||
T Consensus 437 l~~l~p-~~~i~v~~~~~~~er~~s~WiGgsilasl~~f~~~witk~EY~E~G~~~iv~~kc 497 (498)
T 3qb0_A 437 LNKILP-SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRF 497 (498)
T ss_dssp HHHHST-TSCCCEECCSCTGGGGSHHHHHHHHHHTCHHHHHTSEEHHHHHTTCCHHHHHHTT
T ss_pred HHHhCC-CCeeEEEcCCCCCccCccEEcccEEEecCcchhceEEEHHHHhhhCcHhhccccC
Confidence 999999 777776642 8999999999999999999999 9999998
No 4
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-64 Score=544.38 Aligned_cols=310 Identities=20% Similarity=0.302 Sum_probs=250.8
Q ss_pred CceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHH
Q 008119 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~ 251 (577)
++++||+||+... ...+.++|||++|.|. |||++|.||+|+|++.|++++.++ +||++++++++..
T Consensus 72 ~~~~vG~ea~~~~-~~~l~~~~Pi~~GvI~---------dwd~~e~iw~~~~~~~L~v~~~~~----pvlltep~~~~~~ 137 (427)
T 3dwl_A 72 LDFFIGNDALKKA-SAGYSLDYPIRHGQIE---------NWDHMERFWQQSLFKYLRCEPEDH----YFLLTEPPLNPPE 137 (427)
T ss_dssp SCCEETHHHHHTH-HHHCCCCCSEETTEEC---------CHHHHHHHHHHHHHTTSCCCGGGC----EEEEEECTTCCHH
T ss_pred CCeEEchHHhhCc-ccCcEEecCcccCeec---------cHHHHHHHHHHHHhHhhCCCCcCC----cEEEEcCCCCCHH
Confidence 5789999999864 1368999999999998 999999999999999999998887 8999999999888
Q ss_pred HHH-HHHHHHhhcCCceEEecchhhHHhhhcC--------CcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHH
Q 008119 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNG--------LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDIS 322 (577)
Q Consensus 252 ~r~-l~ellfE~~~~~~v~~~~~~vla~f~~G--------~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit 322 (577)
.|+ ++|++||.||||+++++.+++||+||+| .++|||||+|++.|+|+||+||+++.+++.++++||+++|
T Consensus 138 ~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt 217 (427)
T 3dwl_A 138 NRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVT 217 (427)
T ss_dssp HHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHH
T ss_pred HHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHH
Confidence 776 9999999999999999999999999999 5889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCCCceeEeeeeccCCCcccCC
Q 008119 323 RCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYP 402 (577)
Q Consensus 323 ~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~p 402 (577)
++|.++|+.++. . ..+.+++++|||++|||+.+-. .....+.. .+.. ++
T Consensus 218 ~~L~~lL~~~~~-------~---~~~~~~~~~IKe~~cyv~~d~~---~e~~~~~~-~~~~-----~~------------ 266 (427)
T 3dwl_A 218 YFVQSLLRDRNE-------P---DSSLKTAERIKEECCYVCPDIV---KEFSRFDR-EPDR-----YL------------ 266 (427)
T ss_dssp HHHHHTTC------------------CHHHHHHHHHHCCCCSCHH---HHHHHTTC-----------C------------
T ss_pred HHHHHHHHHcCC-------C---chhHHHHHHHHHhcCcccCCHH---HHHHHhhc-Cccc-----cc------------
Confidence 999999877642 1 3566899999999999986411 11111110 0100 00
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCc--ccccC-CCcCCCCCCCCC-cCCCCCCCCCCCccCCCCCCcc-CCCHHHHHH
Q 008119 403 KLLVPDVYPPPPRSWFNDYEDMLEDTW--HTDFP-RRSDISDNFYPG-INVGLPMWESYPVLTTKPKKEE-KIGLAEAVT 477 (577)
Q Consensus 403 ~i~~~e~~~~p~~~~~~~~ed~~~d~~--~~~~~-er~~~~E~lfp~-~~~~~~~~~~~~~~~~~~~~~~-~~gL~eaI~ 477 (577)
.|+-..+|+. .+.++ +||.+||.||.+ ..+ .+ ..||+++|.
T Consensus 267 -----------------~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g-----------------~~~~~gI~~~i~ 312 (427)
T 3dwl_A 267 -----------------KYASESITGHSTTIDVGFERFLAPEIFFNPEIAS-----------------SDFLTPLPELVD 312 (427)
T ss_dssp -----------------CBCC---------CBCCTHHHHSGGGGTCGGGTC-----------------SSCCSCHHHHHH
T ss_pred -----------------eeEeeCCCCCeeEEEEChHhhhChhhccCchhcC-----------------CccCCCccHHHH
Confidence 0000001222 45565 899999999944 333 24 479999999
Q ss_pred HHHhcCCChhhHHHhhcCeEEecCCcCCCChHHHHHHHHHhhC--------------CCCCcceEEEE------------
Q 008119 478 SSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAI--------------PSNEAIDMVEV------------ 531 (577)
Q Consensus 478 ~SI~~c~~~d~r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~--------------P~~~~v~~v~v------------ 531 (577)
+||++| |+|+|++||+||+|+||+|++|||.+||++||+.++ |..+++++++.
T Consensus 313 ~sI~~c-~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGS 391 (427)
T 3dwl_A 313 NVVQSS-PIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGS 391 (427)
T ss_dssp HHHHTS-CHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHH
T ss_pred HHHHhC-CHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCce
Confidence 999999 999999999999999999999999999999999987 44556665542
Q ss_pred -eeecCCCCceeEeHHHHhhcCCCceecccc
Q 008119 532 -LGILDFGRDAWIHREDWIRNGIHIGSGRKY 561 (577)
Q Consensus 532 -lasL~sf~~~wItr~EYeE~G~~il~rk~~ 561 (577)
||+|++|+++||||+||+|+|++|++||++
T Consensus 392 ilasl~~f~~~witk~EYeE~G~~iv~~~~~ 422 (427)
T 3dwl_A 392 LLAQTPEFGSYCHTKADYEEYGASIARRYQI 422 (427)
T ss_dssp HHHHSTTHHHHSEEHHHHHHSCGGGGSCCCC
T ss_pred eeccccchhheeEEHHHHhhhChHhheeccc
Confidence 899999999999999999999999999984
No 5
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=100.00 E-value=3.4e-58 Score=488.78 Aligned_cols=309 Identities=18% Similarity=0.333 Sum_probs=253.7
Q ss_pred CceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHH
Q 008119 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~ 251 (577)
++++||++|.... ..+.++|||++|.+. ||+++|.||+|+|++.|++++.++ +++++++++++..
T Consensus 50 ~~~~vG~~a~~~~--~~~~~~~Pi~~G~i~---------d~d~~e~i~~~~~~~~L~~~~~~~----~vvit~p~~~~~~ 114 (375)
T 2fxu_A 50 KDSYVGDEAQSKR--GILTLKYPIEHGIIT---------NWDDMEKIWHHTFYNELRVAPEEH----PTLLTEAPLNPKA 114 (375)
T ss_dssp -CCEEHHHHHHHT--TSEEEECSEETTEEC---------CHHHHHHHHHHHHHTTSCCCGGGS----CEEEEECTTCCHH
T ss_pred CCeEechhHhhcC--cccceeccccCCccc---------CHHHHHHHHHHHHHHhcCCCCcCC----cEEEEeCCCCcHH
Confidence 4578999999874 568999999999998 999999999999988899988776 7888888887776
Q ss_pred HHH-HHHHHHhhcCCceEEecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHH
Q 008119 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 252 ~r~-l~ellfE~~~~~~v~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~ 330 (577)
.|+ +++++||.||+++++++++++||+||+|.+++||||+|+++|+|+||+||+++.++..++++||+++|++|.++|.
T Consensus 115 ~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~~~~lVvDiG~gtt~v~~v~~G~~~~~~~~~~~~GG~~lt~~l~~~l~ 194 (375)
T 2fxu_A 115 NREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILT 194 (375)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcceEEEccchheeeeecCCCeEEEEEcCCCceEEeEeECCEEeccceEEeccCHHHHHHHHHHHHH
Confidence 665 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCC-CceeEeeeeccCCCcccCCcccCCCC
Q 008119 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLIALNVPPMGLFYPKLLVPDV 409 (577)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~-~~k~~~~~~~~aP~~lF~p~i~~~e~ 409 (577)
.++. ++....+...+++||+++|++..+... ...... .... ...+
T Consensus 195 ~~~~-------~~~~~~~~~~~e~iK~~~~~v~~~~~~---e~~~~~--~~~~~~~~~---------------------- 240 (375)
T 2fxu_A 195 ERGY-------SFVTTAEREIVRDIKEKLCYVALDFEN---EMATAA--SSSSLEKSY---------------------- 240 (375)
T ss_dssp HHTC-------CCCSHHHHHHHHHHHHHHCCCCSSHHH---HHHHHH--HCSTTCEEE----------------------
T ss_pred hcCC-------CCCcHHHHHHHHHHHHHHHhhcccHHH---HHHhhc--ccCccCeEE----------------------
Confidence 7642 344446788999999999999753110 000000 0000 0001
Q ss_pred CCCCCCCCCCCcccccCCCcccccC-CCcCCCCCCCCC-cCCCCCCCCCCCccCCCCCCccCCCHHHHHHHHHhcCCChh
Q 008119 410 YPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPG-INVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRID 487 (577)
Q Consensus 410 ~~~p~~~~~~~~ed~~~d~~~~~~~-er~~~~E~lfp~-~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~d 487 (577)
.++|+..+.++ +|+.++|.||.+ ..+ .+..+|+++|.++|.+| +.|
T Consensus 241 --------------~lpdg~~i~i~~erf~~~E~lf~p~~~~-----------------~~~~~i~~~i~~~i~~~-~~~ 288 (375)
T 2fxu_A 241 --------------ELPDGQVITIGNERFRCPETLFQPSFIG-----------------MESAGIHETTYNSIMKC-DID 288 (375)
T ss_dssp --------------ECTTSCEEEESTHHHHHHHTTTCGGGGT-----------------CCSCCHHHHHHHHHHTS-CHH
T ss_pred --------------ECCCCCEEEEChhheechHhhCCCccCC-----------------CCCCCHHHHHHHHHHhC-CHH
Confidence 12234445555 688899999943 333 35679999999999999 899
Q ss_pred hHHHhhcCeEEecCCcCCCChHHHHHHHHHhhCCCCCcceEEEE-------------eeecCCCCceeEeHHHHhhcCCC
Q 008119 488 LQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEV-------------LGILDFGRDAWIHREDWIRNGIH 554 (577)
Q Consensus 488 ~r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~P~~~~v~~v~v-------------lasL~sf~~~wItr~EYeE~G~~ 554 (577)
+|++|++||+||||+|++|||.+||++||..+.|...+++++.. +|++++|+++||||+||+|+|.+
T Consensus 289 ~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v~~~~~p~~~~w~G~si~a~l~~f~~~~itk~ey~e~G~~ 368 (375)
T 2fxu_A 289 IRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPS 368 (375)
T ss_dssp HHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGG
T ss_pred HHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEEEEcCCCCCccEEcchHHhhCcccHhhceeeHHHHhhhChH
Confidence 99999999999999999999999999999999998766765432 88999999999999999999999
Q ss_pred ceecccc
Q 008119 555 IGSGRKY 561 (577)
Q Consensus 555 il~rk~~ 561 (577)
+++||||
T Consensus 369 ~~~~k~~ 375 (375)
T 2fxu_A 369 IVHRKCF 375 (375)
T ss_dssp GGC----
T ss_pred HHhhhcc
Confidence 9999996
No 6
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=100.00 E-value=2.6e-59 Score=500.63 Aligned_cols=307 Identities=21% Similarity=0.363 Sum_probs=137.3
Q ss_pred CceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHH-hhhcCCCCCCCCccceEEecCCCCChH
Q 008119 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWIL-TEKLHIPRSERNLYSAILVLPESFDNR 250 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~-~~~L~i~~~~~~~~~~vlvi~~~~~~~ 250 (577)
++++||++|.... ..+.+++||++|.+. ||++++.||+|+| ++.|++++.++ +|+++++++++.
T Consensus 53 ~~~~vG~ea~~~~--~~~~~~~Pi~~G~i~---------dwd~~e~i~~~~~~~~~L~~~~~~~----~vllt~p~~~~~ 117 (394)
T 1k8k_B 53 KDLMVGDEASELR--SMLEVNYPMENGIVR---------NWDDMKHLWDYTFGPEKLNIDTRNC----KILLTEPPMNPT 117 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEChHHHhcC--CCceeeccccCCEEe---------cHHHHHHHHHHHhcccccCcCCCCC----cEEEEECCCCCH
Confidence 4678999998874 578999999999998 9999999999999 88999988877 799999988877
Q ss_pred HHHH-HHHHHHhhcCCceEEecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHH
Q 008119 251 EIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQ 329 (577)
Q Consensus 251 ~~r~-l~ellfE~~~~~~v~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL 329 (577)
..|+ +++++||.||+++++++.+++||+||+|+++|||||+|+++|+|+||+||+++.++..++++||+++|++|.++|
T Consensus 118 ~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~~~~lVVDiG~g~T~v~pv~~G~~~~~~~~~~~~GG~~lt~~l~~~l 197 (394)
T 1k8k_B 118 KNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLL 197 (394)
T ss_dssp ------------------------------------CCEEEECSSCEEEECEETTEECSTTCEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCCceEEEEEcCCCceEeeeeECCEEcccceEEeeccHHHHHHHHHHHH
Confidence 7665 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCCCceeEeeeeccCCCcccCCcccCCCC
Q 008119 330 RHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDV 409 (577)
Q Consensus 330 ~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~p~i~~~e~ 409 (577)
+.++. ++....+...+++||+++|+++.+... ....... .......+
T Consensus 198 ~~~~~-------~~~~~~~~~~ae~iK~~~~~v~~d~~~---~~~~~~~-~~~~~~~~---------------------- 244 (394)
T 1k8k_B 198 LLRGY-------AFNHSADFETVRMIKEKLCYVGYNIEQ---EQKLALE-TTVLVESY---------------------- 244 (394)
T ss_dssp HHTTC-------CCCTTTTHHHHHHHHHHHCCCCSSHHH---HHHHHHH-CSTTCEEE----------------------
T ss_pred HhcCC-------CCCcHHHHHHHHHHHHhheeEecCHHH---HHHhhcc-CCcCceEE----------------------
Confidence 87642 454456889999999999999753110 0000000 00000001
Q ss_pred CCCCCCCCCCCcccccCCCcccccC-CCcCCCCCCCCC-cCCCCCCCCCCCccCCCCCCccCCCHHHHHHHHHhcCCChh
Q 008119 410 YPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPG-INVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRID 487 (577)
Q Consensus 410 ~~~p~~~~~~~~ed~~~d~~~~~~~-er~~~~E~lfp~-~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~d 487 (577)
.++|+..+.++ +|+.++|.||.+ ..+ .+..+|+++|.++|.+| +.|
T Consensus 245 --------------~lpdg~~i~i~~erf~~~E~Lf~p~~~~-----------------~~~~~i~~~i~~~i~~~-~~d 292 (394)
T 1k8k_B 245 --------------TLPDGRIIKVGGERFEAPEALFQPHLIN-----------------VEGVGVAELLFNTIQAA-DID 292 (394)
T ss_dssp --------------ECTTSCEEEECTHHHHTGGGGTCGGGGT-----------------CCSCCHHHHHHHHHHHS-CTT
T ss_pred --------------ECCCCCEEEECchhhcChHhhCCchhcc-----------------CCCCCHHHHHHHHHHhC-CHH
Confidence 12244445555 789999999943 332 45679999999999999 899
Q ss_pred hHHHhhcCeEEecCCcCCCChHHHHHHHHHhhC-----------CCCCcceEEE-------------EeeecCCCC-cee
Q 008119 488 LQRKLFCSIQLIGGVALTGGLIPAVEERVLHAI-----------PSNEAIDMVE-------------VLGILDFGR-DAW 542 (577)
Q Consensus 488 ~r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~-----------P~~~~v~~v~-------------vlasL~sf~-~~w 542 (577)
+|++|++||+|+||+|++|||.+||++||..++ |..+++++++ +||+|++|+ ++|
T Consensus 293 ~r~~l~~nIvLtGG~s~~~G~~~rl~~el~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~~ 372 (394)
T 1k8k_B 293 TRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFW 372 (394)
T ss_dssp THHHHHTTCEEESGGGCSTTHHHHHHHHHHHHHHHHTCSSCCCTTCCCCC------------------------------
T ss_pred HHHHHHhCEEEeCcccccccHHHHHHHHHHHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhCCcCCcccee
Confidence 999999999999999999999999999999987 7766665432 289999999 999
Q ss_pred EeHHHHhhcCCCceec
Q 008119 543 IHREDWIRNGIHIGSG 558 (577)
Q Consensus 543 Itr~EYeE~G~~il~r 558 (577)
|||+||+|+|.++++|
T Consensus 373 itk~eY~e~G~~~~~~ 388 (394)
T 1k8k_B 373 MTRQEYQEKGVRVLEK 388 (394)
T ss_dssp ----------------
T ss_pred ecHHHHhhhCHHHHHh
Confidence 9999999999999987
No 7
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=100.00 E-value=2.7e-54 Score=464.84 Aligned_cols=316 Identities=17% Similarity=0.252 Sum_probs=250.7
Q ss_pred CceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHH
Q 008119 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~ 251 (577)
++++||++|...+ .+.+++||++|.+. ||++++.||+|+|.+.|+++++++ +++++++++++..
T Consensus 58 ~~~~vG~~a~~~~---~~~~~~pi~~G~i~---------d~d~~e~i~~~~~~~~L~~~~~~~----~vvit~p~~~~~~ 121 (418)
T 1k8k_A 58 LDFFIGDEAIEKP---TYATKWPIRHGIVE---------DWDLMERFMEQVIFKYLRAEPEDH----YFLLTEPPLNTPE 121 (418)
T ss_dssp GCEEEGGGGTSCT---TSEEECCEETTEES---------CHHHHHHHHHHHHHTTTCCCGGGC----CEEEEECTTCCHH
T ss_pred cCeEEChHHHhcC---CCEEeccccCCEEC---------CHHHHHHHHHHHHHhccCCCCCCC----cEEEEeCCCCCHH
Confidence 4689999999884 59999999999998 999999999999988899988776 6888888777666
Q ss_pred HHH-HHHHHHhhcCCceEEecchhhHHhhh---------cCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHH
Q 008119 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFG---------NGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDI 321 (577)
Q Consensus 252 ~r~-l~ellfE~~~~~~v~~~~~~vla~f~---------~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~di 321 (577)
.|+ +.+++||.+|+++++++.+++||+|+ .|. +|||||+|+++|+|+||++|+++.++..++++||+++
T Consensus 122 ~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~-~glVvDiG~gtt~v~~v~~G~~~~~~~~~~~lGG~~l 200 (418)
T 1k8k_A 122 NREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTL-TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDI 200 (418)
T ss_dssp HHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCC-CEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCC-eEEEEEcCCCceEEEEeECCEEcccceEEEeCcHHHH
Confidence 665 99999999999999999999999999 566 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCC-CceeEeeeeccCCCccc
Q 008119 322 SRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLIALNVPPMGLF 400 (577)
Q Consensus 322 t~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~-~~k~~~~~~~~aP~~lF 400 (577)
|++|.++|..++. ++....+...++++|+++|++..+... ....+.. .+.. ...+.+ |.+.
T Consensus 201 t~~l~~~l~~~~~-------~~~~~~~~~~~e~iK~~~~~v~~~~~~---e~~~~~~-~~~~~~~~~~l------pd~~- 262 (418)
T 1k8k_A 201 TYFIQQLLRDREV-------GIPPEQSLETAKAVKERYSYVCPDLVK---EFNKYDT-DGSKWIKQYTG------INAI- 262 (418)
T ss_dssp HHHHHHHHHTTCC-------CCCGGGHHHHHHHHHHHHCCCCSCHHH---HHHHHHH-SGGGTCEEEEE------ECTT-
T ss_pred HHHHHHHHHhcCC-------CCCCHHHHHHHHHHHHhhchhcccHHH---HHHhhcc-cccccceeEEC------CCCC-
Confidence 9999999876542 333456789999999999999753110 0000000 0000 001111 1100
Q ss_pred CCcccCCCCCCCCCCCCCCCcccccCCCcccccC-CCcCCCCCCCCCcCCCCCCCCCCCccCCCCCCcc-CCCHHHHHHH
Q 008119 401 YPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEE-KIGLAEAVTS 478 (577)
Q Consensus 401 ~p~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-er~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~-~~gL~eaI~~ 478 (577)
. .....+.++ +|+.++|.||.+...+ .+ ..+|+++|.+
T Consensus 263 -----~-------------------~~~~~i~l~~erf~~~E~lF~P~~~~----------------~~~~~~i~~~i~~ 302 (418)
T 1k8k_A 263 -----S-------------------KKEFSIDVGYERFLGPEIFFHPEFAN----------------PDFTQPISEVVDE 302 (418)
T ss_dssp -----T-------------------CCEEEEEECTHHHHHHHTTTCGGGTC----------------TTCCCCHHHHHHH
T ss_pred -----C-------------------CcccEEEeChHHhhCcHhhCCCccCC----------------CCCCCCHHHHHHH
Confidence 0 000123444 6888899999443211 22 3699999999
Q ss_pred HHhcCCChhhHHHhhcCeEEecCCcCCCChHHHHHHHHHhhC----------------CCCCcceEEEE-----------
Q 008119 479 SILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAI----------------PSNEAIDMVEV----------- 531 (577)
Q Consensus 479 SI~~c~~~d~r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~----------------P~~~~v~~v~v----------- 531 (577)
+|.+| +.|+|+++++||+||||+|++|||.+||++||..++ |...++++++.
T Consensus 303 si~~~-~~~~~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Gg 381 (418)
T 1k8k_A 303 VIQNC-PIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGG 381 (418)
T ss_dssp HHHHS-CGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHH
T ss_pred HHHcC-CHHHHHHHHhceEEeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhH
Confidence 99999 899999999999999999999999999999999875 55666665532
Q ss_pred --eeecCCCCceeEeHHHHhhcCCCceeccc-cCC
Q 008119 532 --LGILDFGRDAWIHREDWIRNGIHIGSGRK-YKD 563 (577)
Q Consensus 532 --lasL~sf~~~wItr~EYeE~G~~il~rk~-~~~ 563 (577)
||+|++|+++||||+||+|+|+++++||| |+.
T Consensus 382 silasl~~f~~~~itk~ey~e~G~~~~~~~~~f~~ 416 (418)
T 1k8k_A 382 SMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGV 416 (418)
T ss_dssp HHHTTSHHHHHHSEEHHHHHHHCGGGGGCCCCCSC
T ss_pred HHHHcCccHhheEEEHHHHhhhCHHHHhhhccccC
Confidence 89999999999999999999999999976 654
No 8
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=99.93 E-value=2.1e-24 Score=225.67 Aligned_cols=251 Identities=17% Similarity=0.227 Sum_probs=173.2
Q ss_pred ceEEccccccCCCC--CCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCC-CCCCCccceEEec-CCCCC
Q 008119 173 EFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIP-RSERNLYSAILVL-PESFD 248 (577)
Q Consensus 173 ~~~vG~eAl~~~~~--~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~-~~~~~~~~~vlvi-~~~~~ 248 (577)
.++||++|.+...+ .+..+.+|+++|.+. +|+.++.+|.++|.+..... .... .++++ |..|+
T Consensus 41 ~~~vG~~A~~~~~~~~~~~~~~~p~~~g~i~---------~~~~~~~i~~~~l~~~~~~~~~~~~----~~vitvP~~~~ 107 (344)
T 1jce_A 41 ILKVGLEAKNMIGKTPATIKAIRPMRDGVIA---------DYTVALVMLRYFINKAKGGMNLFKP----RVVIGVPIGIT 107 (344)
T ss_dssp EEEESHHHHTTTTCCCTTEEEECCEETTEES---------SHHHHHHHHHHHHHHHHTSCCSCCC----EEEEEECTTCC
T ss_pred EEEEcHHHHHhcccCCCCeEEEecCCCCeeC---------ChHHHHHHHHHHHHHHhhccccCCC----eEEEEECCCCC
Confidence 35688888775432 356778999999987 99999999999995433322 2222 56665 54555
Q ss_pred hHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC-----cceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHH
Q 008119 249 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISR 323 (577)
Q Consensus 249 ~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~-----~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~ 323 (577)
..+.+.+.+ +++.+|++.+.++.+++||++++|. .+.+|||+|+++|+|+++..|.++. ...+++||+++|+
T Consensus 108 ~~~r~~~~~-a~~~aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDiGggttdvsv~~~~~~~~--~~~~~lGG~~id~ 184 (344)
T 1jce_A 108 DVERRAILD-AGLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIVT--WESIRIAGDEMDE 184 (344)
T ss_dssp HHHHHHHHH-HHHHTTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEEEECSSCEEEEEEETTEEEE--EEEESCSHHHHHH
T ss_pred HHHHHHHHH-HHHHcCCCeEeccCCHHHHHHhcCCCCCCCceEEEEEeCCCeEEEEEEEcCCEEe--eCCCCccChhHHH
Confidence 555434555 6899999999999999999999987 5789999999999999999998774 3578999999999
Q ss_pred HHHHHHHhcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCCCceeEeeeeccCCCcccCCc
Q 008119 324 CLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPK 403 (577)
Q Consensus 324 ~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~p~ 403 (577)
.|.+.+..+. .+ ..+...+|++|+++|+........ ..++.+....+ ..+. +
T Consensus 185 ~l~~~l~~~~--------~~--~~~~~~ae~~K~~l~~~~~~~~~~--------------~~~~~~~~~~~-~~g~--~- 236 (344)
T 1jce_A 185 AIVQYVRETY--------RV--AIGERTAERVKIEIGNVFPSKEND--------------ELETTVSGIDL-STGL--P- 236 (344)
T ss_dssp HHHHHHHHHH--------CE--ECCHHHHHHHHHHHCBCSCCHHHH--------------HCEEEEEEEET-TTTE--E-
T ss_pred HHHHHHHHHh--------Cc--ccCHHHHHHHHHHHhccCccccCC--------------cceEEEecccc-CCCC--c-
Confidence 9999876431 11 234678999999999875421000 00010000000 0000 0
Q ss_pred ccCCCCCCCCCCCCCCCcccccCCCcccccC-CCcCCCCCCCCCcCCCCCCCCCCCccCCCCCCccCCCHHHHHHHHHhc
Q 008119 404 LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILS 482 (577)
Q Consensus 404 i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-er~~~~E~lfp~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~ 482 (577)
..+.++ +++ +.++.+ ....+.+.|.++|.+
T Consensus 237 -------------------------~~~~i~~~~~---~~~~~~---------------------~~~~i~~~i~~~l~~ 267 (344)
T 1jce_A 237 -------------------------RKLTLKGGEV---REALRS---------------------VVVAIVESVRTTLEK 267 (344)
T ss_dssp -------------------------EEEEEEHHHH---HHHTHH---------------------HHHHHHHHHHHHHHT
T ss_pred -------------------------eeEEEeHHHH---HHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 000000 000 001100 123578899999999
Q ss_pred CCChhhHHHhh-cCeEEecCCcCCCChHHHHHHHHH
Q 008119 483 TGRIDLQRKLF-CSIQLIGGVALTGGLIPAVEERVL 517 (577)
Q Consensus 483 c~~~d~r~~L~-~NIvLvGG~S~ipG~~~RLe~eL~ 517 (577)
| +.+++.+++ ++|+|+||+|++|||.++|++++.
T Consensus 268 ~-~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~ 302 (344)
T 1jce_A 268 T-PPELVSDIIERGIFLTGGGSLLRGLDTLLQKETG 302 (344)
T ss_dssp S-CHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHS
T ss_pred C-CchhccchhhCcEEEECccccchHHHHHHHHHHC
Confidence 9 788888888 799999999999999999999995
No 9
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=99.61 E-value=3.3e-15 Score=150.53 Aligned_cols=140 Identities=16% Similarity=0.131 Sum_probs=108.3
Q ss_pred EecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHHHHHHHHHHHhhcCCceEEe
Q 008119 191 IHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVV 270 (577)
Q Consensus 191 l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~ 270 (577)
-..|+++|.+. ||+.++.+|++++.........+.. .++++.+.......++.++.+++.+|++...+
T Consensus 58 ~~~~l~~g~i~---------d~~~~~~~l~~~~~~~~~~~~~~~~---~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i 125 (272)
T 3h1q_A 58 WASVVKDGLVV---------DYIGAIQIVRELKAKVERLLGSELF---QAATAIPPGTVGRNAEACGHVVAGAGLELVTL 125 (272)
T ss_dssp ECCCCBTTBCT---------THHHHHHHHHHHHHHHHHHSSSCCC---EEEEECCSCC---CTTHHHHHHHHTTCEEEEE
T ss_pred cccccCCCEEE---------cHHHHHHHHHHHHHHHHHhcCCccC---eEEEEcCCCCCHHHHHHHHHHHHHcCCeeeec
Confidence 34689999998 9999999999998643222112221 34454444433333457788999999999999
Q ss_pred cchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHHhcCCCCCcccccccccchHH
Q 008119 271 HQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLL 350 (577)
Q Consensus 271 ~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~~~~~~p~~~~~~l~~~~d~~ 350 (577)
..++.|+++++|..+++|||+|+++|.++++.+|.++.. ..+++||.++|+.+.+.+. .+..
T Consensus 126 ~~e~~A~a~~~~~~~~~viDiGggst~~~~~~~g~~~~~--~~~~~Gg~~~~~~l~~~l~----------------~~~~ 187 (272)
T 3h1q_A 126 VDEPVAAARALGINDGIVVDIGGGTTGIAVIEKGKITAT--FDEPTGGTHLSLVLAGSYK----------------IPFE 187 (272)
T ss_dssp ECHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEEEEE--CCBSCCHHHHHHHHHHHHT----------------CCHH
T ss_pred ccHHHHHHHHHcCCCEEEEEECCCcEEEEEEECCEEEEE--ecCCCcHHHHHHHHHHHhC----------------CCHH
Confidence 999999999999999999999999999999999988743 5789999999999987763 1246
Q ss_pred HHHHHHHHcc
Q 008119 351 MLNRIKESYC 360 (577)
Q Consensus 351 l~e~LKe~~c 360 (577)
.++++|+++|
T Consensus 188 ~ae~~k~~~~ 197 (272)
T 3h1q_A 188 EAETIKKDFS 197 (272)
T ss_dssp HHHHHHHSST
T ss_pred HHHHHHHhcC
Confidence 7899998876
No 10
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=99.49 E-value=7.7e-14 Score=153.46 Aligned_cols=122 Identities=20% Similarity=0.219 Sum_probs=84.1
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCCc-----ceEEEeeCCCeEEEEEee--CCee-eccC
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVE--DGVA-LPNT 310 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~~-----tglVVDiG~~~T~V~pV~--dG~v-i~~s 310 (577)
.|+-+|..|+..+.+.+.+ +++..|++.+.++.++.||++++|.. +.+|||+|+++|.|+.+. +|.. +..+
T Consensus 112 ~VitvPa~~~~~qr~a~~~-a~~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~ 190 (509)
T 2v7y_A 112 AVITVPAYFNDAQRQATKD-AGRIAGLEVERIINEPTAAALAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKAT 190 (509)
T ss_dssp EEEEECTTCCHHHHHHHHH-HHHHTTCEEEEEEEHHHHHHHHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHH-HHHHcCCCeEEEecCHHHHHHHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEe
Confidence 4555666666665444555 56899999999999999999999873 689999999999999776 4643 3333
Q ss_pred cEEeccchhHHHHHHHHHHHhcCCCCCcccccccc-----cchHHHHHHHHHHccccc
Q 008119 311 EKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTK-----AMDLLMLNRIKESYCEIK 363 (577)
Q Consensus 311 ~~~l~~GG~dit~~L~~lL~~~~~~p~~~~~~l~~-----~~d~~l~e~LKe~~c~v~ 363 (577)
....++||+++|+.|.+.+...-.. .+ ..++.. ..-...+|++|+.+|...
T Consensus 191 ~g~~~lGG~d~d~~l~~~l~~~~~~-~~-~~~~~~~~~~~~~l~~~aE~~K~~ls~~~ 246 (509)
T 2v7y_A 191 AGDNHLGGDDFDQVIIDYLVNQFKQ-EH-GIDLSKDKMALQRLKDAAEKAKKELSGVT 246 (509)
T ss_dssp EEETTCSHHHHHHHHHHHHHHHHHH-HH-SCCGGGCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred cCCCCcCHHHHHHHHHHHHHHHHHH-Hh-CCCcccCHHHHHHHHHHHHHHHHhcCCCC
Confidence 3457899999999998866442000 00 012211 012467899999987653
No 11
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.42 E-value=7.2e-13 Score=140.04 Aligned_cols=122 Identities=17% Similarity=0.144 Sum_probs=82.6
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCCc------ceEEEeeCCCeEEEEEeeCC------ee
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS------TACVVNMGAQVTSVICVEDG------VA 306 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~~------tglVVDiG~~~T~V~pV~dG------~v 306 (577)
.|+-+|..|+..+.+.+.+ +++..|++.+.++.+++||++++|.. +.+|||+|+++|+++.+..| ..
T Consensus 138 ~vitvP~~~~~~~r~~~~~-a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~ 216 (383)
T 1dkg_D 138 AVITVPAYFNDAQRQATKD-AGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTF 216 (383)
T ss_dssp EEECBCTTCCHHHHHHHHH-HHHHTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCC
T ss_pred EEEEECCCCCHHHHHHHHH-HHHHcCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeE
Confidence 3444666666655444555 57899999999999999999988763 58999999999999987743 32
Q ss_pred e-ccCcEEeccchhHHHHHHHHHHHhcCCCCCcccccccc-----cchHHHHHHHHHHccccc
Q 008119 307 L-PNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTK-----AMDLLMLNRIKESYCEIK 363 (577)
Q Consensus 307 i-~~s~~~l~~GG~dit~~L~~lL~~~~~~p~~~~~~l~~-----~~d~~l~e~LKe~~c~v~ 363 (577)
. ..+....++||+++|+.|.+++...-.. . ...++.. ..-+..+|++|+++|...
T Consensus 217 ~v~~~~~~~~lGG~~id~~l~~~l~~~~~~-~-~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~ 277 (383)
T 1dkg_D 217 EVLATNGDTHLGGEDFDSRLINYLVEEFKK-D-QGIDLRNDPLAMQRLKEAAEKAKIELSSAQ 277 (383)
T ss_dssp EEEEEEEESSCSHHHHHHHHHHHHHHHHHH-H-HCCCSTTCHHHHHHHHHHHHHHHHHTTSSS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHH-H-hCCCcccCHHHHHHHHHHHHHHHHHhCCCC
Confidence 1 1123457899999999999876542000 0 0011111 012467899999988654
No 12
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.37 E-value=3.5e-13 Score=142.72 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=67.9
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCCcc------eEEEeeCCCeEEEEEee--CCeeeccC
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLST------ACVVNMGAQVTSVICVE--DGVALPNT 310 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~~t------glVVDiG~~~T~V~pV~--dG~vi~~s 310 (577)
.|+-+|..|+..+. +.+.-+++..|++.+.++.+++||++++|... .+|||+|+++|.|+.+. +|.....+
T Consensus 156 ~vitvP~~~~~~~r-~~~~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~~~~ 234 (394)
T 3qfu_A 156 AVVTVPAYFNDAQR-QATKDAGTIAGLNVLRIVNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQA 234 (394)
T ss_dssp EEEEECTTCCHHHH-HHHHHHHHHTTCEEEEEEEHHHHHHHHTTTTSCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEE
T ss_pred EEEEECCCCCHHHH-HHHHHHHHHcCCceEEEecCHHHHHHHHhhccCCCCceEEEEEcCCCceeEEEEEEeCCEEEEEE
Confidence 35556666776654 44444558999999999999999999998643 49999999999887774 55332222
Q ss_pred -cEEeccchhHHHHHHHHHHH
Q 008119 311 -EKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 311 -~~~l~~GG~dit~~L~~lL~ 330 (577)
....++||+++|+.|.+.+.
T Consensus 235 ~~~~~~lGG~~~d~~l~~~l~ 255 (394)
T 3qfu_A 235 TSGDTHLGGEDFDYKIVRQLI 255 (394)
T ss_dssp EEEETTCSHHHHHHHHHHHHH
T ss_pred EcCCCCCChHHHHHHHHHHHH
Confidence 33479999999999988663
No 13
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.29 E-value=9.4e-13 Score=140.12 Aligned_cols=91 Identities=19% Similarity=0.281 Sum_probs=69.3
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCCcc---------eEEEeeCCCeEEEEEee--CCee-
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLST---------ACVVNMGAQVTSVICVE--DGVA- 306 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~~t---------glVVDiG~~~T~V~pV~--dG~v- 306 (577)
.|+-+|..|+..+. +.+.-+++..|++.+.++.++.||++++|... .+|||+|+++|.++.+. +|..
T Consensus 161 ~vitvPa~~~~~~r-~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~ 239 (404)
T 3i33_A 161 AVITVPAYFNDSQR-QATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFE 239 (404)
T ss_dssp EEEEECTTCCHHHH-HHHHHHHHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCHHHH-HHHHHHHHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEE
Confidence 45556777776664 44455588999999999999999999987643 39999999999998774 5432
Q ss_pred eccCcEEeccchhHHHHHHHHHHH
Q 008119 307 LPNTEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 307 i~~s~~~l~~GG~dit~~L~~lL~ 330 (577)
+..+.....+||+++++.|.+.+.
T Consensus 240 v~~~~~~~~lGG~~~d~~l~~~l~ 263 (404)
T 3i33_A 240 VKSTAGDTHLGGEDFDNRMVSHLA 263 (404)
T ss_dssp EEEEEEETTCSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222334579999999999987663
No 14
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=99.08 E-value=7.3e-10 Score=116.59 Aligned_cols=90 Identities=20% Similarity=0.348 Sum_probs=71.1
Q ss_pred HHHHHhhcCCceEEecchhhHHhhhcCC------cc-eEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHH
Q 008119 256 LSIVLRDLRFASAVVHQEGLAAVFGNGL------ST-ACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWT 328 (577)
Q Consensus 256 ~ellfE~~~~~~v~~~~~~vla~f~~G~------~t-glVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~l 328 (577)
+.-+++..|+.-..+..+++|++.++|. .. .+|||+|+++|.|+.+.+|.++. ...+++||+++|+.+.+.
T Consensus 156 ~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~~--~~~~~~GG~~i~~~i~~~ 233 (377)
T 2ych_A 156 VLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLA--VRVLTLSGKDFTEAIARS 233 (377)
T ss_dssp HHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEEE--EEEESCSHHHHHHHHHHH
T ss_pred HHHHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEEE--EEeeechHHHHHHHHHHH
Confidence 3445689999999999999999988753 23 59999999999999999998874 357899999999998763
Q ss_pred HHhcCCCCCcccccccccchHHHHHHHHHHccccc
Q 008119 329 QRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIK 363 (577)
Q Consensus 329 L~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~ 363 (577)
+ + .+...+|++|+++++..
T Consensus 234 ~---~-------------~~~~~aE~~K~~~~~~~ 252 (377)
T 2ych_A 234 F---N-------------LDLLAAEEVKRTYGMAT 252 (377)
T ss_dssp T---T-------------CCHHHHHHHHHHTC---
T ss_pred h---C-------------CCHHHHHHHHhhccccc
Confidence 2 1 23467999999987654
No 15
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=98.89 E-value=4.1e-09 Score=116.92 Aligned_cols=91 Identities=18% Similarity=0.247 Sum_probs=71.0
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC-------cceEEEeeCCCeEEEEEee--CCee-ec
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-------STACVVNMGAQVTSVICVE--DGVA-LP 308 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~-------~tglVVDiG~~~T~V~pV~--dG~v-i~ 308 (577)
.|+-+|..|+..+. +.+.-+++..|++.+.++.++.||++++|. .+.+|+|+|+++|.|+.+. +|.. +.
T Consensus 142 ~VitVPa~f~~~qr-~a~~~A~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~ 220 (554)
T 1yuw_A 142 AVVTVPAYFNDSQR-QATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVK 220 (554)
T ss_dssp EEEEECTTCCHHHH-HHHHHHHHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEE
T ss_pred EEEEECCCCCHHHH-HHHHHHHHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEE
Confidence 45557777777664 444447789999999999999999998874 3579999999999999887 7754 23
Q ss_pred cCcEEeccchhHHHHHHHHHHH
Q 008119 309 NTEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 309 ~s~~~l~~GG~dit~~L~~lL~ 330 (577)
.+.....+||+++++.|.+.+.
T Consensus 221 a~~g~~~lGG~d~d~~l~~~l~ 242 (554)
T 1yuw_A 221 STAGDTHLGGEDFDNRMVNHFI 242 (554)
T ss_dssp EEEEETTCSHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 3344578999999999987654
No 16
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=98.84 E-value=7.7e-09 Score=110.79 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=72.8
Q ss_pred HHHHHhhcCCceEEecchhhHHhhhcCCc-----ceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHH
Q 008119 256 LSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 256 ~ellfE~~~~~~v~~~~~~vla~f~~G~~-----tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~ 330 (577)
..-+++..|+.-..++.+++||+++++.. ..+|||+|+++|.|+.+.+|.++.. ..+++||+++|+.+...+.
T Consensus 173 ~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~~~--~~i~~GG~~it~dIa~~l~ 250 (419)
T 4a2a_A 173 FYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKI--SYVPVGMKHVIKDVSAVLD 250 (419)
T ss_dssp HHHHHHTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETTEEEEE--EEESCCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECCEEEEE--EecccHHHHHHHHHHHHHC
Confidence 33457899999999999999999988752 5799999999999999999988743 5789999999999987542
Q ss_pred hcCCCCCcccccccccchHHHHHHHHHHccc
Q 008119 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCE 361 (577)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~ 361 (577)
.+...+|++|.++..
T Consensus 251 ----------------~~~~~AE~iK~~~g~ 265 (419)
T 4a2a_A 251 ----------------TSFEESERLIITHGN 265 (419)
T ss_dssp ----------------CCHHHHHHHHHHHCC
T ss_pred ----------------CCHHHHHHHHHHhcc
Confidence 234679999988754
No 17
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=98.80 E-value=1.2e-08 Score=115.56 Aligned_cols=91 Identities=14% Similarity=0.174 Sum_probs=70.0
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC------------cceEEEeeCCCeEEEEEee--CC
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------------STACVVNMGAQVTSVICVE--DG 304 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~------------~tglVVDiG~~~T~V~pV~--dG 304 (577)
.|+-+|..|+..+. +.+.-+.+..|+..+.++.++.||++++|. .+.+|+|+|+++|.|+.+. +|
T Consensus 141 ~VITVPa~f~~~qR-~a~~~Aa~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g 219 (675)
T 3d2f_A 141 VCIAVPPWYTEEQR-YNIADAARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKG 219 (675)
T ss_dssp EEEEECTTCCHHHH-HHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEETT
T ss_pred EEEEECCCCCHHHH-HHHHHHHHHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEecCC
Confidence 45557777777664 444446688999999999999999987754 2479999999999999886 67
Q ss_pred ee-eccCcEEeccchhHHHHHHHHHHH
Q 008119 305 VA-LPNTEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 305 ~v-i~~s~~~l~~GG~dit~~L~~lL~ 330 (577)
.. +..+.....+||+++++.|.+.+.
T Consensus 220 ~~~V~a~~gd~~lGG~d~D~~l~~~l~ 246 (675)
T 3d2f_A 220 QLKVLGTACDKHFGGRDFDLAITEHFA 246 (675)
T ss_dssp EEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred eEEEEEEcCCCCccHHHHHHHHHHHHH
Confidence 54 333334578999999999988664
No 18
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=98.79 E-value=2.5e-08 Score=111.73 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=81.2
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCCc------ceEEEeeCCCeEEEEEee------CCee
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS------TACVVNMGAQVTSVICVE------DGVA 306 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~~------tglVVDiG~~~T~V~pV~------dG~v 306 (577)
.|+-+|..|+..+. +.+.-+.+..|+..+.++.++.||++++|.. +.+|+|+|+++|.|+.+. +|..
T Consensus 138 ~VitVPa~f~d~qr-~a~~~A~~~AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~ 216 (605)
T 2kho_A 138 AVITVPAYFNDAQR-QATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTF 216 (605)
T ss_dssp EEEEECTTCCHHHH-HHHHHHHHTTTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEE
T ss_pred EEEEECCCCCHHHH-HHHHHHHHHcCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeE
Confidence 46667777776654 4444556889999999999999999988753 369999999999999886 4543
Q ss_pred -eccCcEEeccchhHHHHHHHHHHHhcCCCCCcccccccc-cc----hHHHHHHHHHHcccc
Q 008119 307 -LPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTK-AM----DLLMLNRIKESYCEI 362 (577)
Q Consensus 307 -i~~s~~~l~~GG~dit~~L~~lL~~~~~~p~~~~~~l~~-~~----d~~l~e~LKe~~c~v 362 (577)
+..+.....+||+++++.|.+.+...-.- .+ ..++.. .. =+..+|++|+.++..
T Consensus 217 ~v~a~~gd~~lGG~d~D~~l~~~l~~~~~~-~~-~~~~~~~~~~~~~L~~~aE~~K~~ls~~ 276 (605)
T 2kho_A 217 EVLATNGDTHLGGEDFDSRLINYLVEEFKK-DQ-GIDLRNDPLAMQRLKEAAEKAKIELSSA 276 (605)
T ss_dssp EEEEEEEESSCSGGGTHHHHHHHHHHHHHH-HH-SCCSTTCHHHHHHHHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHHHHH-Hh-CCCcccCHHHHHHHHHHHHHHHHHcCCC
Confidence 22223446899999999998766432000 00 011210 00 135678888887654
No 19
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=98.76 E-value=8.2e-09 Score=109.88 Aligned_cols=110 Identities=17% Similarity=0.206 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhhcCCCCCCCCccceEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCCc--------ce
Q 008119 215 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS--------TA 286 (577)
Q Consensus 215 ~e~i~~~~~~~~L~i~~~~~~~~~~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~~--------tg 286 (577)
++.+++++- ..++.+.. ..|+-+|..|+..+. +.+.-+.+..|+..+.++.++.||+++++.. +.
T Consensus 135 L~~l~~~a~-~~~~~~~~-----~~vitvPa~~~~~~r-~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~v 207 (409)
T 4gni_A 135 LRRLVGAAS-EYLGKKVT-----SAVITIPTNFTEKQK-AALIAAAAAADLEVLQLISEPAAAVLAYDARPEATISDKII 207 (409)
T ss_dssp HHHHHHHHH-HHHTSCCC-----EEEEEECTTCCHHHH-HHHHHHHHHTTCEEEEEEEHHHHHHHHTTC------CCEEE
T ss_pred HHHHHHHHH-HHhCCCCC-----eEEEEECCCCCHHHH-HHHHHHHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEE
Confidence 455555543 34543222 156667888887664 3455567888999999999999999999864 48
Q ss_pred EEEeeCCCeEEEEEe--eCCeee-ccCcEEeccchhHHHHHHHHHHHh
Q 008119 287 CVVNMGAQVTSVICV--EDGVAL-PNTEKTLPFGGEDISRCLLWTQRH 331 (577)
Q Consensus 287 lVVDiG~~~T~V~pV--~dG~vi-~~s~~~l~~GG~dit~~L~~lL~~ 331 (577)
+|||+|+++|.++.+ .+|..- ..+.....+||+++|+.|.+.+..
T Consensus 208 lv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~~~l~~ 255 (409)
T 4gni_A 208 VVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSK 255 (409)
T ss_dssp EEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999875 344221 112234799999999999887653
No 20
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=98.54 E-value=4.7e-07 Score=101.39 Aligned_cols=91 Identities=21% Similarity=0.262 Sum_probs=68.4
Q ss_pred eEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCC------cceEEEeeCCCeEEEEEeeCCe------e
Q 008119 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVICVEDGV------A 306 (577)
Q Consensus 239 ~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~------~tglVVDiG~~~T~V~pV~dG~------v 306 (577)
.|+-+|..|+..+ |+.+.-+.+..|+..+.++.++.||++++|. .+-+|+|+|++++.|+.+.-+- .
T Consensus 138 ~VITVPa~f~~~q-r~a~~~Aa~~AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~ 216 (605)
T 4b9q_A 138 AVITVPAYFNDAQ-RQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTF 216 (605)
T ss_dssp EEEEECTTCCHHH-HHHHHHHHHHTTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEE
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceE
Confidence 4666777787665 3456666788999999999999999988865 3469999999999999876332 1
Q ss_pred -eccCcEEeccchhHHHHHHHHHHH
Q 008119 307 -LPNTEKTLPFGGEDISRCLLWTQR 330 (577)
Q Consensus 307 -i~~s~~~l~~GG~dit~~L~~lL~ 330 (577)
+..+.....+||+++++.|.+.+.
T Consensus 217 evla~~gd~~lGG~d~D~~l~~~l~ 241 (605)
T 4b9q_A 217 EVLATNGDTHLGGEDFDSRLINYLV 241 (605)
T ss_dssp EEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred EEEEecCCCCcChHHHHHHHHHHHH
Confidence 111223467899999999987664
No 21
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=98.54 E-value=1.1e-07 Score=99.08 Aligned_cols=138 Identities=14% Similarity=0.166 Sum_probs=94.3
Q ss_pred CceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccceE--EecCCCCCh
Q 008119 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAI--LVLPESFDN 249 (577)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~v--lvi~~~~~~ 249 (577)
+.|+||++|. +|+..|.+. + +..+.++.+++.+...-..... .+.| +-+|..+..
T Consensus 78 ~~~~vG~~A~-----------~~l~~~~~~---------~-~~~~~ll~~~l~~~~~~~~~~~--~~vvL~i~vP~~~~~ 134 (346)
T 2fsj_A 78 GKYASGNNIR-----------VPQGDGRLA---------S-KEAFPLIAAALWESGIHNDGSP--VDLVIGSGTPLGTFD 134 (346)
T ss_dssp GGGCCSSCCB-----------CCSSTTCTT---------S-TTTHHHHHHHHHHHCCCC---C--EEEEEEEEECGGGHH
T ss_pred cEEEEcccee-----------cccCCCccc---------C-hhHHHHHHHHHHHhhhccCCCc--eEEEEcccCCHHHHH
Confidence 5788999988 678888776 5 6677788888854331111111 1233 334544554
Q ss_pred HHHHHHHHHHHhh-------------cCCceEEecchhhHHhhhc--CC------cceEEEeeCCCeEEEEEee--CCee
Q 008119 250 REIKEMLSIVLRD-------------LRFASAVVHQEGLAAVFGN--GL------STACVVNMGAQVTSVICVE--DGVA 306 (577)
Q Consensus 250 ~~~r~l~ellfE~-------------~~~~~v~~~~~~vla~f~~--G~------~tglVVDiG~~~T~V~pV~--dG~v 306 (577)
.+.+.+.+.+... +++..+.+++++.+|++++ +. .+.+|||+|+++|.|+.+. +|..
T Consensus 135 ~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~~ 214 (346)
T 2fsj_A 135 LEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP 214 (346)
T ss_dssp HHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTEE
T ss_pred HHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccHHHHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecCCEE
Confidence 4444455544332 2357799999999999985 31 2349999999999999998 8876
Q ss_pred eccCcEEeccchhHHHHHHHHHHHhc
Q 008119 307 LPNTEKTLPFGGEDISRCLLWTQRHH 332 (577)
Q Consensus 307 i~~s~~~l~~GG~dit~~L~~lL~~~ 332 (577)
+......+++||+++++.+.+.++..
T Consensus 215 v~~~s~~~~lGg~~i~~~I~~~i~~~ 240 (346)
T 2fsj_A 215 VVELSFSLQIGVGDAISALSRKIAKE 240 (346)
T ss_dssp CGGGCEEESCCHHHHHHHHHHHHHHH
T ss_pred EeecCCCcchhHHHHHHHHHHHHHHH
Confidence 66555788999999999998877543
No 22
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=98.02 E-value=2e-05 Score=84.93 Aligned_cols=92 Identities=16% Similarity=0.231 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhhcCCceEEecchhhHHhhhc----CCc-ceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHH
Q 008119 251 EIKEMLSIVLRDLRFASAVVHQEGLAAVFGN----GLS-TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 325 (577)
Q Consensus 251 ~~r~l~ellfE~~~~~~v~~~~~~vla~f~~----G~~-tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L 325 (577)
.++.+.+.+=+.++++-=.=.-++.||.+|+ ++. -.++||+|+++|+++.+.+|..+.. ..+++||+++|..+
T Consensus 369 ~m~NI~~cVer~~gL~veV~g~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv~a--~~ip~gG~~VT~DI 446 (610)
T 2d0o_A 369 QMAMIAREIEQKLNIDVQIGGAEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDIIA--THLAGAGDMVTMII 446 (610)
T ss_dssp CHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCEEE--EEEECSHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcceeccccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEEE--EEeccchHHHHHHH
Confidence 3444555544444652111116778887777 333 3699999999999999999977743 57999999999999
Q ss_pred HHHHHhcCCCCCcccccccccchHHHHHHHHHHcc
Q 008119 326 LWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYC 360 (577)
Q Consensus 326 ~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c 360 (577)
..-|.. -|...+|+||. |.
T Consensus 447 A~~Lgt---------------~d~~~AErIK~-YG 465 (610)
T 2d0o_A 447 ARELGL---------------EDRYLAEEIKK-YP 465 (610)
T ss_dssp HHHHTC---------------CCHHHHHHHHH-SC
T ss_pred HHHhCC---------------CCHHHHHHhcc-cC
Confidence 887642 23578999998 64
No 23
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=97.99 E-value=1.4e-05 Score=86.52 Aligned_cols=71 Identities=23% Similarity=0.239 Sum_probs=56.8
Q ss_pred chhhHHhhhc----CCc-ceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHHhcCCCCCccccccccc
Q 008119 272 QEGLAAVFGN----GLS-TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKA 346 (577)
Q Consensus 272 ~~~vla~f~~----G~~-tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~~~~~~p~~~~~~l~~~ 346 (577)
-++.||.+|+ ++. -.++||+|+++|+++.+.+|..+. ...+++||+++|..+..-|..
T Consensus 392 ~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv~--a~~ip~gG~~VT~DIA~~Lg~--------------- 454 (607)
T 1nbw_A 392 VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQIT--AVHLAGAGNMVSLLIKTELGL--------------- 454 (607)
T ss_dssp CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCEE--EEEEECCHHHHHHHHHHHHTC---------------
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEE--EEEeccchHHHHHHHHHHhCC---------------
Confidence 6777777777 333 369999999999999999997774 357999999999999887642
Q ss_pred chHHHHHHHHHHcc
Q 008119 347 MDLLMLNRIKESYC 360 (577)
Q Consensus 347 ~d~~l~e~LKe~~c 360 (577)
-|...+|+||. |.
T Consensus 455 ~d~~~AErIK~-YG 467 (607)
T 1nbw_A 455 EDLSLAEAIKK-YP 467 (607)
T ss_dssp SCHHHHHHHHH-SC
T ss_pred CCHHHHHHhcc-cC
Confidence 23578999998 64
No 24
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=97.31 E-value=0.00021 Score=73.14 Aligned_cols=71 Identities=8% Similarity=0.096 Sum_probs=58.2
Q ss_pred hhcCCceEEecchhhHHhhhcCC-----cceEEEeeCCCeEEEEEeeCCee-eccCcEEeccchhHHHHHHHHHHHh
Q 008119 261 RDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVA-LPNTEKTLPFGGEDISRCLLWTQRH 331 (577)
Q Consensus 261 E~~~~~~v~~~~~~vla~f~~G~-----~tglVVDiG~~~T~V~pV~dG~v-i~~s~~~l~~GG~dit~~L~~lL~~ 331 (577)
+.+++..+.++.++++|+++++. ...+|||+|+++|.++.+.+|.+ +..+...+++||+++++.+.+.+..
T Consensus 136 ~~~~i~~v~~~~e~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~ 212 (320)
T 2zgy_A 136 DTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSL 212 (320)
T ss_dssp CCCEEEEEEEEESSHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHHHHHHHHHHTTC
T ss_pred cEEEEEEEEEecCcHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEeCCeeEEeeecCCccccHHHHHHHHHHHHHH
Confidence 34567889999999999998742 35799999999999999999875 4434467799999999999987754
No 25
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=97.25 E-value=0.00036 Score=72.76 Aligned_cols=68 Identities=7% Similarity=0.102 Sum_probs=58.7
Q ss_pred CceEEecchhhHHhhhcCC-----------cceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHHhc
Q 008119 265 FASAVVHQEGLAAVFGNGL-----------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHH 332 (577)
Q Consensus 265 ~~~v~~~~~~vla~f~~G~-----------~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~~~ 332 (577)
+..|.+++|+++|+|+++. ...+|||||+++|.++.+.+|.++......+++||..+++.+.+.++..
T Consensus 154 I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~~~~~~~~~~s~s~~~G~~~~~~~i~~~l~~~ 232 (355)
T 3js6_A 154 VKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVINKGTIDFYKRIASHVSKK 232 (355)
T ss_dssp EEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHTC--
T ss_pred EEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCCCcEEEEEEcCCEEccccccCcchHHHHHHHHHHHHHHHh
Confidence 4789999999999999863 2468999999999999998899988777889999999999999888653
No 26
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=96.87 E-value=0.00092 Score=68.89 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=57.4
Q ss_pred CceEEecchhhHHhhhcC----CcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHHh
Q 008119 265 FASAVVHQEGLAAVFGNG----LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRH 331 (577)
Q Consensus 265 ~~~v~~~~~~vla~f~~G----~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~~ 331 (577)
+..+.+.+|+++|+|... ..+.+|||||+++|.++.+.+|.++......+++||+++++.+.+.++.
T Consensus 149 I~~v~v~pe~~ga~~~~~~~~~~~~v~vvDiGggTtd~~v~~~g~~~~~~~~~~~~G~~~~~~~i~~~l~~ 219 (329)
T 4apw_A 149 ITDITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSLYRNCVVNPSERFIEEHGVKDLIIRVGDALTD 219 (329)
T ss_dssp EEEEEEEEHHHHHHHHSCCCCTTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHTSSSS
T ss_pred EeEEEEEeccHHHHhhcchhhccCCEEEEEeCCCcEEEEEEECCEEeeccccchhhHHHHHHHHHHHHHHh
Confidence 567999999999998762 2457999999999999999999988776678999999999999876654
No 27
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=88.08 E-value=1.5 Score=44.37 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=36.1
Q ss_pred CcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHH
Q 008119 283 LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 326 (577)
Q Consensus 283 ~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~ 326 (577)
..+++|||||.++|.++-+.+|.+. ....+++|+-.+++.+.
T Consensus 137 ~~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~~G~v~l~e~~~ 178 (315)
T 1t6c_A 137 EGEVCVVDQGGGSTEYVFGKGYKVR--EVISLPIGIVNLTETFF 178 (315)
T ss_dssp CSEEEEEEEETTEEEEEEEETTEEE--EEEEECCCHHHHHHHHC
T ss_pred CCCEEEEEeCCCcEEEEEEeCCcee--eEEEEeccHHHHHHHhc
Confidence 4569999999999999999998775 34679999999998873
No 28
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=81.92 E-value=1.4 Score=44.60 Aligned_cols=40 Identities=13% Similarity=0.253 Sum_probs=34.8
Q ss_pred cceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHH
Q 008119 284 STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 325 (577)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L 325 (577)
..++|||||.++|.++-+.+|.+.. ...+++|.-.+++.+
T Consensus 131 ~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~e~f 170 (315)
T 3mdq_A 131 HISLAMDIGGGSVEFIIGNKNEILW--KQSFEIGGQRLIDRF 170 (315)
T ss_dssp CCEEEEEECSSCEEEEEECSSCEEE--EEEESCCHHHHHHHS
T ss_pred CCEEEEEeCCCceEEEEEECCeEee--eEEEechhhHHHHHh
Confidence 5689999999999999999987763 468999999988766
No 29
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=81.82 E-value=1.1 Score=45.76 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=23.2
Q ss_pred cceEEEeeCCCeEEEEEeeCCeeec
Q 008119 284 STACVVNMGAQVTSVICVEDGVALP 308 (577)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~vi~ 308 (577)
.++++||||..+|.|+|+.+|.++.
T Consensus 127 ~~~llvDIGsTTTDIipi~~G~pl~ 151 (334)
T 3cet_A 127 ENCILVDMGSTTTDIIPIVEGKVVA 151 (334)
T ss_dssp SSEEEEEECSSCEEEEEEETTEECC
T ss_pred CCEEEEEcCcchhhhhhhcCCeecc
Confidence 4699999999999999999999875
No 30
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=79.52 E-value=1.2 Score=45.64 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=33.0
Q ss_pred cceEEEeeCCCeEEEEEeeC--Ceee--ccCcEEeccchhHHHHHH
Q 008119 284 STACVVNMGAQVTSVICVED--GVAL--PNTEKTLPFGGEDISRCL 325 (577)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~d--G~vi--~~s~~~l~~GG~dit~~L 325 (577)
..++|||||.++|.++-+.+ +.+. ......+++|+..+|+.+
T Consensus 146 ~~~lviDIGGGStel~~~~~~~~~~~~~~~~~~SlplG~v~lt~~~ 191 (343)
T 3cer_A 146 APYLVVDLGGGSTELVIGGDGVSAPTTQVQGAFSMNIGSVRMTERH 191 (343)
T ss_dssp SSEEEEEECSSCEEEEECCCSSSSCTTSCSEEEEESCCHHHHHHHT
T ss_pred CCEEEEEeCCCceEEEEeecCccCcccccceeEEEehhHHHHHHHh
Confidence 46999999999999998877 3321 013568999999999876
No 31
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=74.91 E-value=3.9 Score=44.25 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=34.7
Q ss_pred ceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHH
Q 008119 285 TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 326 (577)
Q Consensus 285 tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~ 326 (577)
.++|||||.++|.++-..+|.+. ....+++|.-.+|+.+.
T Consensus 138 ~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrlte~f~ 177 (513)
T 1u6z_A 138 RKLVIDIGGGSTELVIGENFEPI--LVESRRMGCVSFAQLYF 177 (513)
T ss_dssp CEEEEEECSSCEEEEEEETTEEE--EEEEESCCHHHHHHHHS
T ss_pred CEEEEEECCCcEEEEEEeCCeee--EEEEEeccHHHHHHHHc
Confidence 69999999999999999888876 35689999999998763
No 32
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=73.34 E-value=4.7 Score=43.59 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=33.7
Q ss_pred cceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHH
Q 008119 284 STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRC 324 (577)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~ 324 (577)
..++|||||.++|.++-+.+|.+. ....+++|.-.+++.
T Consensus 140 ~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl~e~ 178 (508)
T 3hi0_A 140 PDGIAGDLGGGSLELIDIKDKSCG--EGITLPLGGLRLSEQ 178 (508)
T ss_dssp CEEEEEEECSSCEEEEEEETTEEC--CCEEESCCHHHHHHH
T ss_pred CCeEEEEeCCCceEEEEeeCCeee--eEEEecceEEehhhc
Confidence 457999999999999999999876 457899999988874
No 33
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=58.69 E-value=3.5 Score=40.30 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=43.0
Q ss_pred eEEecchhhHHhhhcCC---cceEEEeeCCCeEEEEEee-CCeeecc-CcEEeccchhHHHHHHHHHH
Q 008119 267 SAVVHQEGLAAVFGNGL---STACVVNMGAQVTSVICVE-DGVALPN-TEKTLPFGGEDISRCLLWTQ 329 (577)
Q Consensus 267 ~v~~~~~~vla~f~~G~---~tglVVDiG~~~T~V~pV~-dG~vi~~-s~~~l~~GG~dit~~L~~lL 329 (577)
.+..+++..|+++|+.. ..-.|+|+|.+.++++-+. +|....- .-....-||.+..+.+.+.|
T Consensus 73 ~~~~Vne~~aha~a~~~~~~~~~~vl~lgG~~~~~~~~~~~g~~~~~~~~~~~~~g~G~f~d~~a~~l 140 (276)
T 4ehu_A 73 ADKQISELSCHARGVNFIIPETRTIIDIGGQDAKVLKLDNNGRLLNFLMNDKCAAGTGRFLDVMAKII 140 (276)
T ss_dssp CSEECCHHHHHHHHHHHHSTTCCEEEEECSSCEEEEEECTTSCEEEEEEECSCSTTSHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHhCCCCCeEEEEcCCCceEEEEEecCceEEEEeCCCcCcchhhHHHHHHHHh
Confidence 35678888988888754 3468999999999998884 5643211 11235667777766666665
No 34
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=52.63 E-value=12 Score=38.51 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=27.0
Q ss_pred cceEEEeeCCCeEEEEEeeC--CeeeccCcEEeccchhH
Q 008119 284 STACVVNMGAQVTSVICVED--GVALPNTEKTLPFGGED 320 (577)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~d--G~vi~~s~~~l~~GG~d 320 (577)
.+++|||||.++|.|+-..+ +.+.......+++||..
T Consensus 140 ~t~~v~DiGGGStei~~~~~~~~~~~~~~~~sl~lG~~~ 178 (353)
T 3aap_A 140 KSVGVMDMGGASVQIVFPMPKNAEISKHNQVELNIYGQN 178 (353)
T ss_dssp SCEEEEEECSSEEEEEEECCCCTTSCGGGEEEEEETTEE
T ss_pred ccEEEEEeCCCceEEEEecCCccccCCCceEEEEECCcc
Confidence 47999999999999998744 33433334678888743
No 35
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=40.81 E-value=4.2 Score=41.48 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=24.5
Q ss_pred EEEEcCCCceeeeecCCCCCCCccceeeEEecC
Q 008119 20 LVVINPGSANIRIGLAQHDTPLNIPHCIARRTS 52 (577)
Q Consensus 20 ~iVihpGS~~lriG~asd~~P~~ip~~iAr~~~ 52 (577)
+|-|+.|..|.++-. .+-.-..+|++||....
T Consensus 23 ~igiDlG~~~tkv~~-~~g~~~~~PSvva~~~~ 54 (346)
T 2fsj_A 23 VVGLDVGYGDTKVIG-VDGKRIIFPSRWAVTET 54 (346)
T ss_dssp EEEEEECSSEEEEEC-GGGCEEEEESCEEEECC
T ss_pred EEEEecCCcceeEEe-cCCCEEEecceeeeccc
Confidence 589999999999974 33334468999998754
No 36
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=38.91 E-value=2.8 Score=43.08 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=21.4
Q ss_pred EEEEcCCCceeeeecCCCCCCCccceeeEEe
Q 008119 20 LVVINPGSANIRIGLAQHDTPLNIPHCIARR 50 (577)
Q Consensus 20 ~iVihpGS~~lriG~asd~~P~~ip~~iAr~ 50 (577)
+|=|+.|=.++|+ ..++ ....+|++|+..
T Consensus 6 iigiD~G~~~~K~-~~~~-~~~~fPS~v~~~ 34 (355)
T 3js6_A 6 VMALDFGNGFVKG-KIND-EKFVIPSRIGRK 34 (355)
T ss_dssp EEEEEECSSEEEE-EETT-EEEEEESEEEEC
T ss_pred EEEEEcCCCcEEE-ecCC-eEEEeceeeeec
Confidence 5668899999995 3333 667789999864
No 37
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=37.33 E-value=11 Score=38.19 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=18.8
Q ss_pred hhcCeEEecCCcCCCChHHHHHHHHH
Q 008119 492 LFCSIQLIGGVALTGGLIPAVEERVL 517 (577)
Q Consensus 492 L~~NIvLvGG~S~ipG~~~RLe~eL~ 517 (577)
+...|+|+||||++ +.+.|++++.
T Consensus 278 ~~~~IvltGGGA~l--~~~~l~~~~~ 301 (329)
T 4apw_A 278 QLDSLIFIGGTTQK--LKEQISKTYP 301 (329)
T ss_dssp SCSEEEEESTTHHH--HHHHHHHHST
T ss_pred HccEEEEECChHHH--HHHHHHHHcC
Confidence 46889999999999 5577776653
No 38
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=32.52 E-value=72 Score=30.88 Aligned_cols=52 Identities=10% Similarity=0.138 Sum_probs=40.6
Q ss_pred HHHHHHhhcCCceEEecchhhHHhhhc-----CCcceEEEeeCCCeEEEEEeeCCeeecc
Q 008119 255 MLSIVLRDLRFASAVVHQEGLAAVFGN-----GLSTACVVNMGAQVTSVICVEDGVALPN 309 (577)
Q Consensus 255 l~ellfE~~~~~~v~~~~~~vla~f~~-----G~~tglVVDiG~~~T~V~pV~dG~vi~~ 309 (577)
+.+.| +.|++| |++.++.-++++|. +..+.++|-+|.+ .-..-|.+|.++..
T Consensus 87 l~~~l-~~~~~p-v~v~NDa~aaa~~e~~~~~~~~~~v~l~~GtG-iG~giv~~G~l~~G 143 (292)
T 2gup_A 87 WYEAL-SSYQLP-VHLENDANCVGLSELLAHPELENAACVVIGTG-IGGAMIINGRLHRG 143 (292)
T ss_dssp HHHHT-GGGCCC-EEEEEHHHHHHHHHHHHCTTCSSEEEEEESSS-EEEEEEETTEEECC
T ss_pred HHHHH-HHcCCC-EEEechHHHHHHHHHHhcCCCCeEEEEEECCc-eEEEEEECCEEEec
Confidence 55667 888988 88999999998873 5568999999987 44666778987754
No 39
>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A*
Probab=24.76 E-value=29 Score=36.28 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=23.4
Q ss_pred cceEEEeeCCCeEEEEEeeCCeeeccCcE
Q 008119 284 STACVVNMGAQVTSVICVEDGVALPNTEK 312 (577)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~vi~~s~~ 312 (577)
..-+|..+|.+. |+|.|.+|.++..+.-
T Consensus 210 ~~lIv~HLGnGa-Si~Ai~~GksVDTsMG 237 (415)
T 2e1z_A 210 SGLIVAHLGNGA-SICAVRNGQSVDTSMG 237 (415)
T ss_dssp CEEEEEEESSSE-EEEEEETTEEEEESCC
T ss_pred cCEEEEEeCCch-hhhheeCCEEEecCCC
Confidence 367999999886 9999999999876543
No 40
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*
Probab=23.28 E-value=69 Score=33.88 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=24.1
Q ss_pred cceEEEeeCCCeEEEEEeeCCee-eccCcEEeccch
Q 008119 284 STACVVNMGAQVTSVICVEDGVA-LPNTEKTLPFGG 318 (577)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~v-i~~s~~~l~~GG 318 (577)
.+..|+|+|.++|.|+-+.++.. -+.....+.++|
T Consensus 190 ~t~gvlDlGGgStqi~~~~~~~~~~~~~~~~l~l~g 225 (456)
T 3cj1_A 190 GTLGAMDLGGASTQITFETTSPSEDPGNEVHLRLYG 225 (456)
T ss_dssp CCCEEEEECSSEEEEEEECCSCCSCGGGEEEEEETT
T ss_pred CceEEEEcCCCceEEEeccCCccCCCCceEEEEeCC
Confidence 46799999999999998876642 223334455555
No 41
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=22.73 E-value=1.6e+02 Score=28.77 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=33.0
Q ss_pred hhcCCceEEecchhhHHhhh-----c--CCcceEEEeeCCCeEEEEEeeCCeeecc
Q 008119 261 RDLRFASAVVHQEGLAAVFG-----N--GLSTACVVNMGAQVTSVICVEDGVALPN 309 (577)
Q Consensus 261 E~~~~~~v~~~~~~vla~f~-----~--G~~tglVVDiG~~~T~V~pV~dG~vi~~ 309 (577)
+.|++| +++.++.-++++| . +..+.++|-+|.+ +-..-|.+|.++..
T Consensus 106 ~~~~~p-v~v~ND~~aaa~~e~~~g~~~~~~~~~~l~~GtG-iG~giv~~G~l~~G 159 (326)
T 2qm1_A 106 SALGIP-FALDNDANVAALGERWKGAGENNPDVIFITLGTG-VGGGIVAAGKLLHG 159 (326)
T ss_dssp HHHCSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEEETTEECCC
T ss_pred HHhCCC-EEEecHHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEECCEEeec
Confidence 345666 7777777777655 2 3467899999988 55666778987764
No 42
>1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A*
Probab=21.95 E-value=33 Score=35.79 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=23.3
Q ss_pred cceEEEeeCCCeEEEEEeeCCeeeccCcE
Q 008119 284 STACVVNMGAQVTSVICVEDGVALPNTEK 312 (577)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~vi~~s~~ 312 (577)
..-+|..+|.+. |+|.|.+|.++..+.-
T Consensus 202 ~~lIv~HLGnGa-Si~Ai~~GksVDTsMG 229 (408)
T 1g99_A 202 TKIITCHLGNGS-SITAVEGGKSVETSMG 229 (408)
T ss_dssp CEEEEEEESSSE-EEEEEETTEEEEESCC
T ss_pred CCEEEEEeCCcc-chhheECCEEEEeCCC
Confidence 367999999886 9999999999876543
No 43
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=20.67 E-value=80 Score=30.28 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=31.3
Q ss_pred CHHHHHHHHHhcCCChhhHHHhhcCeEEecCCcCCCChHHHHHHHHHh
Q 008119 471 GLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLH 518 (577)
Q Consensus 471 gL~eaI~~SI~~c~~~d~r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~ 518 (577)
++.++|.+.+... -.+......|+|+||.+..|++.++|++++..
T Consensus 188 ~~~~~v~~~l~~~---~~~~~~~~~vvl~GGva~n~~lr~~l~~~~g~ 232 (276)
T 4ehu_A 188 GIHTSVAKRVSSL---VKRIGVQRNVVMVGGVARNSGIVRAMAREINT 232 (276)
T ss_dssp HHHHHHHHHHHHH---HHHHCCCSSEEEESGGGGCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHH---HHhcccCCeEEEecCccchHHHHHHHHHHHCC
Confidence 4445555544322 22334456799999999999999999988853
No 44
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=20.02 E-value=23 Score=35.18 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=16.3
Q ss_pred hcCeEEecCCcCCCChHHHHHHHH
Q 008119 493 FCSIQLIGGVALTGGLIPAVEERV 516 (577)
Q Consensus 493 ~~NIvLvGG~S~ipG~~~RLe~eL 516 (577)
...|+|+||+|.+ +.+.|++.+
T Consensus 273 ~~~vvl~GGga~l--l~~~l~~~~ 294 (320)
T 2zgy_A 273 YTHVMVIGGGAEL--ICDAVKKHT 294 (320)
T ss_dssp CCEEEEESTTHHH--HHHHHHHTS
T ss_pred CCeEEEECChHHH--HHHHHHHHh
Confidence 3679999999987 666655543
Done!