Query 008120
Match_columns 577
No_of_seqs 454 out of 2277
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 19:43:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2381 Phosphatidylinositol 4 100.0 4.4E-65 9.5E-70 518.0 10.3 280 253-553 2-285 (286)
2 TIGR03843 conserved hypothetic 100.0 1.3E-45 2.9E-50 363.8 16.0 197 267-514 11-235 (253)
3 cd01802 AN1_N ubiquitin-like d 99.7 1.9E-16 4E-21 140.3 8.3 92 87-180 9-100 (103)
4 cd01793 Fubi Fubi ubiquitin-li 99.6 5.3E-16 1.2E-20 128.9 7.5 74 30-105 1-74 (74)
5 cd01802 AN1_N ubiquitin-like d 99.6 9.4E-16 2E-20 135.8 8.4 78 27-105 25-103 (103)
6 cd01807 GDX_N ubiquitin-like d 99.6 9.1E-16 2E-20 127.5 7.4 72 30-102 1-73 (74)
7 PTZ00044 ubiquitin; Provisiona 99.6 1.4E-15 3E-20 126.5 7.6 75 30-105 1-76 (76)
8 cd01807 GDX_N ubiquitin-like d 99.6 1.3E-15 2.9E-20 126.5 7.0 73 106-180 1-73 (74)
9 cd01797 NIRF_N amino-terminal 99.6 4.7E-15 1E-19 124.9 7.0 73 30-103 1-76 (78)
10 cd01810 ISG15_repeat2 ISG15 ub 99.6 6.5E-15 1.4E-19 122.4 6.7 73 32-105 1-74 (74)
11 cd01803 Ubiquitin Ubiquitin. U 99.6 9.9E-15 2.1E-19 120.8 7.5 75 30-105 1-76 (76)
12 cd01806 Nedd8 Nebb8-like ubiq 99.5 1.2E-14 2.6E-19 120.3 7.8 75 30-105 1-76 (76)
13 cd01797 NIRF_N amino-terminal 99.5 1.1E-14 2.4E-19 122.7 6.8 73 106-180 1-75 (78)
14 cd01793 Fubi Fubi ubiquitin-li 99.5 1.7E-14 3.7E-19 119.9 7.1 71 106-180 1-71 (74)
15 cd01804 midnolin_N Ubiquitin-l 99.5 2.4E-14 5.2E-19 120.5 7.7 76 29-106 1-77 (78)
16 cd01798 parkin_N amino-termina 99.5 2E-14 4.3E-19 118.1 6.8 70 108-179 1-70 (70)
17 cd01805 RAD23_N Ubiquitin-like 99.5 3.4E-14 7.4E-19 118.3 7.8 77 106-182 1-77 (77)
18 PTZ00044 ubiquitin; Provisiona 99.5 3.2E-14 6.8E-19 118.3 7.3 73 106-180 1-73 (76)
19 cd01810 ISG15_repeat2 ISG15 ub 99.5 4E-14 8.6E-19 117.7 7.3 71 108-180 1-71 (74)
20 cd01791 Ubl5 UBL5 ubiquitin-li 99.5 3.6E-14 7.8E-19 118.2 7.0 69 30-99 2-71 (73)
21 cd01798 parkin_N amino-termina 99.5 3.5E-14 7.6E-19 116.6 6.5 69 32-101 1-70 (70)
22 KOG0003 Ubiquitin/60s ribosoma 99.5 5.5E-15 1.2E-19 128.7 0.9 75 30-105 1-76 (128)
23 cd01805 RAD23_N Ubiquitin-like 99.5 7.5E-14 1.6E-18 116.2 7.6 72 30-102 1-75 (77)
24 cd01794 DC_UbP_C dendritic cel 99.5 5.3E-14 1.2E-18 116.2 6.4 67 33-100 2-69 (70)
25 cd01794 DC_UbP_C dendritic cel 99.5 6.8E-14 1.5E-18 115.5 6.8 68 109-178 2-69 (70)
26 cd01791 Ubl5 UBL5 ubiquitin-li 99.5 6.6E-14 1.4E-18 116.6 6.4 70 106-177 2-71 (73)
27 cd01806 Nedd8 Nebb8-like ubiq 99.5 1.3E-13 2.8E-18 114.0 7.7 73 106-180 1-73 (76)
28 cd01809 Scythe_N Ubiquitin-lik 99.5 1.3E-13 2.8E-18 112.9 7.5 71 30-101 1-72 (72)
29 cd01803 Ubiquitin Ubiquitin. U 99.5 1.3E-13 2.9E-18 114.0 7.2 73 106-180 1-73 (76)
30 cd01809 Scythe_N Ubiquitin-lik 99.4 2.1E-13 4.5E-18 111.7 6.9 72 106-179 1-72 (72)
31 cd01800 SF3a120_C Ubiquitin-li 99.4 1.9E-13 4.1E-18 114.3 6.8 70 35-105 4-73 (76)
32 cd01792 ISG15_repeat1 ISG15 ub 99.4 1.7E-13 3.8E-18 115.6 6.0 74 106-181 3-78 (80)
33 cd01792 ISG15_repeat1 ISG15 ub 99.4 2.7E-13 6E-18 114.4 7.0 71 30-101 3-76 (80)
34 cd01808 hPLIC_N Ubiquitin-like 99.4 3E-13 6.5E-18 111.4 6.7 71 106-179 1-71 (71)
35 cd01804 midnolin_N Ubiquitin-l 99.4 3.1E-13 6.8E-18 113.7 6.6 72 106-180 2-73 (78)
36 cd01808 hPLIC_N Ubiquitin-like 99.4 3.6E-13 7.8E-18 111.0 6.8 70 30-101 1-71 (71)
37 cd01796 DDI1_N DNA damage indu 99.4 3.9E-13 8.4E-18 111.1 6.6 67 32-99 1-70 (71)
38 PF00240 ubiquitin: Ubiquitin 99.4 5.8E-13 1.3E-17 108.5 7.4 66 36-102 3-68 (69)
39 KOG0004 Ubiquitin/40S ribosoma 99.4 1.1E-13 2.4E-18 128.6 3.1 76 30-106 1-77 (156)
40 PF00240 ubiquitin: Ubiquitin 99.4 6.2E-13 1.4E-17 108.3 7.2 68 111-180 1-68 (69)
41 cd01812 BAG1_N Ubiquitin-like 99.4 1.1E-12 2.3E-17 107.4 7.2 70 30-100 1-70 (71)
42 KOG0005 Ubiquitin-like protein 99.4 3E-13 6.5E-18 106.2 3.6 69 30-99 1-70 (70)
43 cd01796 DDI1_N DNA damage indu 99.4 1.1E-12 2.3E-17 108.5 6.3 67 108-176 1-69 (71)
44 cd01790 Herp_N Homocysteine-re 99.4 9.7E-13 2.1E-17 111.0 6.0 72 106-178 2-78 (79)
45 cd01813 UBP_N UBP ubiquitin pr 99.4 2E-12 4.3E-17 108.0 7.5 70 30-100 1-73 (74)
46 KOG0005 Ubiquitin-like protein 99.3 4.9E-13 1.1E-17 105.0 2.8 70 106-177 1-70 (70)
47 cd01763 Sumo Small ubiquitin-r 99.3 6.4E-12 1.4E-16 107.9 8.8 81 24-105 6-87 (87)
48 cd01790 Herp_N Homocysteine-re 99.3 4E-12 8.7E-17 107.3 6.3 71 29-100 1-78 (79)
49 cd01800 SF3a120_C Ubiquitin-li 99.2 1.5E-11 3.3E-16 102.8 7.1 66 113-180 5-70 (76)
50 KOG0003 Ubiquitin/60s ribosoma 99.2 6.6E-13 1.4E-17 115.8 -1.4 72 106-179 1-72 (128)
51 cd01812 BAG1_N Ubiquitin-like 99.2 1.1E-11 2.5E-16 101.3 5.9 70 106-178 1-70 (71)
52 KOG0004 Ubiquitin/40S ribosoma 99.2 5.9E-12 1.3E-16 117.2 4.2 72 106-179 1-72 (156)
53 TIGR00601 rad23 UV excision re 99.2 1.9E-11 4E-16 130.9 8.0 76 106-183 1-79 (378)
54 cd01799 Hoil1_N Ubiquitin-like 99.2 2.6E-11 5.7E-16 101.5 6.8 69 31-100 2-74 (75)
55 smart00213 UBQ Ubiquitin homol 99.2 5.6E-11 1.2E-15 94.4 7.2 64 30-94 1-64 (64)
56 cd01815 BMSC_UbP_N Ubiquitin-l 99.2 2E-11 4.4E-16 101.8 4.4 55 45-100 16-74 (75)
57 cd01815 BMSC_UbP_N Ubiquitin-l 99.1 5.3E-11 1.2E-15 99.4 5.1 56 122-178 16-74 (75)
58 TIGR00601 rad23 UV excision re 99.1 6.8E-11 1.5E-15 126.6 7.2 72 30-102 1-76 (378)
59 cd01763 Sumo Small ubiquitin-r 99.1 1.6E-10 3.5E-15 99.2 8.0 76 103-180 9-84 (87)
60 cd01813 UBP_N UBP ubiquitin pr 99.1 1.1E-10 2.3E-15 97.5 5.9 68 107-177 2-72 (74)
61 PF00454 PI3_PI4_kinase: Phosp 99.0 1.5E-12 3.3E-17 130.1 -9.3 159 318-492 27-202 (235)
62 smart00213 UBQ Ubiquitin homol 99.0 2.7E-10 5.8E-15 90.4 5.5 64 106-172 1-64 (64)
63 cd01814 NTGP5 Ubiquitin-like N 99.0 2.4E-10 5.1E-15 101.8 4.8 76 106-181 5-92 (113)
64 cd01795 USP48_C USP ubiquitin- 99.0 3.4E-10 7.4E-15 98.3 5.5 64 39-102 15-78 (107)
65 cd01799 Hoil1_N Ubiquitin-like 99.0 8.3E-10 1.8E-14 92.5 6.2 64 112-178 9-74 (75)
66 KOG0011 Nucleotide excision re 99.0 8.9E-10 1.9E-14 113.7 7.1 77 106-182 1-77 (340)
67 KOG0010 Ubiquitin-like protein 98.9 7.3E-10 1.6E-14 119.7 5.9 75 104-181 14-88 (493)
68 KOG0010 Ubiquitin-like protein 98.9 2.1E-09 4.5E-14 116.2 6.9 75 28-103 14-88 (493)
69 KOG0011 Nucleotide excision re 98.9 2.1E-09 4.6E-14 111.0 5.8 73 30-103 1-76 (340)
70 cd01769 UBL Ubiquitin-like dom 98.9 4.6E-09 1E-13 84.4 6.3 64 36-100 5-68 (69)
71 cd01769 UBL Ubiquitin-like dom 98.9 5.7E-09 1.2E-13 83.9 6.7 67 110-178 2-68 (69)
72 cd01814 NTGP5 Ubiquitin-like N 98.8 2.7E-09 5.8E-14 95.2 4.7 75 28-103 3-92 (113)
73 cd01789 Alp11_N Ubiquitin-like 98.8 1.6E-08 3.5E-13 86.4 8.4 70 30-99 2-79 (84)
74 PF11976 Rad60-SLD: Ubiquitin- 98.8 1.4E-08 3E-13 83.5 6.8 70 30-100 1-72 (72)
75 cd01795 USP48_C USP ubiquitin- 98.8 1.4E-08 3.1E-13 88.3 6.3 62 116-179 15-77 (107)
76 PF11976 Rad60-SLD: Ubiquitin- 98.7 3E-08 6.4E-13 81.5 6.3 71 106-178 1-72 (72)
77 KOG0001 Ubiquitin and ubiquiti 98.7 7.5E-08 1.6E-12 76.9 7.4 71 32-103 2-73 (75)
78 KOG0001 Ubiquitin and ubiquiti 98.6 2.8E-07 6E-12 73.6 7.8 71 108-180 2-72 (75)
79 PF14560 Ubiquitin_2: Ubiquiti 98.5 3.6E-07 7.9E-12 78.3 7.4 70 30-99 2-81 (87)
80 KOG3829 Uncharacterized conser 98.4 1.5E-06 3.3E-11 92.1 9.7 169 250-452 151-390 (486)
81 cd01788 ElonginB Ubiquitin-lik 98.4 1.1E-06 2.4E-11 78.5 7.1 73 30-103 3-82 (119)
82 cd01811 OASL_repeat1 2'-5' oli 98.3 1.5E-06 3.3E-11 71.8 6.3 72 30-102 1-77 (80)
83 PF13881 Rad60-SLD_2: Ubiquiti 98.3 3.7E-06 7.9E-11 75.8 9.2 76 107-182 4-91 (111)
84 cd01789 Alp11_N Ubiquitin-like 98.2 2.9E-06 6.3E-11 72.5 7.0 62 115-178 12-80 (84)
85 KOG4248 Ubiquitin-like protein 98.2 1.1E-06 2.4E-11 101.7 5.6 70 31-102 4-74 (1143)
86 KOG4248 Ubiquitin-like protein 98.2 1.7E-06 3.6E-11 100.3 5.3 70 107-179 4-73 (1143)
87 PLN02560 enoyl-CoA reductase 98.2 2.9E-06 6.2E-11 89.2 6.7 67 30-97 1-79 (308)
88 cd01788 ElonginB Ubiquitin-lik 98.1 5.3E-06 1.2E-10 74.1 6.6 72 108-181 3-82 (119)
89 PLN02560 enoyl-CoA reductase 98.1 4.5E-06 9.7E-11 87.7 6.6 70 106-176 1-80 (308)
90 PF13881 Rad60-SLD_2: Ubiquiti 98.1 1.4E-05 3E-10 72.1 8.7 74 29-103 2-90 (111)
91 PF14560 Ubiquitin_2: Ubiquiti 97.9 1.9E-05 4E-10 67.7 5.5 61 116-178 14-82 (87)
92 PF11543 UN_NPL4: Nuclear pore 97.9 1.9E-05 4.1E-10 67.1 5.4 72 28-99 3-78 (80)
93 cd00196 UBQ Ubiquitin-like pro 97.8 6.2E-05 1.3E-09 56.6 6.3 63 37-100 6-68 (69)
94 cd00196 UBQ Ubiquitin-like pro 97.7 9.9E-05 2.1E-09 55.4 6.7 64 113-178 5-68 (69)
95 cd01801 Tsc13_N Ubiquitin-like 97.7 5E-05 1.1E-09 63.7 5.4 52 46-98 20-74 (77)
96 cd01801 Tsc13_N Ubiquitin-like 97.7 6.3E-05 1.4E-09 63.1 6.0 53 123-176 20-74 (77)
97 PF11543 UN_NPL4: Nuclear pore 97.3 0.00018 3.8E-09 61.2 3.6 70 104-176 3-77 (80)
98 KOG0006 E3 ubiquitin-protein l 97.3 0.00027 6E-09 73.1 4.7 68 114-183 12-79 (446)
99 cd01811 OASL_repeat1 2'-5' oli 97.3 0.00068 1.5E-08 56.4 6.0 70 106-178 1-75 (80)
100 KOG0006 E3 ubiquitin-protein l 97.2 0.0006 1.3E-08 70.6 6.8 69 30-99 1-73 (446)
101 KOG1872 Ubiquitin-specific pro 96.9 0.0016 3.5E-08 70.9 6.1 71 31-102 5-76 (473)
102 KOG4495 RNA polymerase II tran 96.8 0.0018 3.8E-08 56.4 4.7 62 30-92 3-66 (110)
103 KOG3493 Ubiquitin-like protein 96.7 0.00065 1.4E-08 55.0 1.0 68 31-99 3-71 (73)
104 KOG3493 Ubiquitin-like protein 96.4 0.0017 3.6E-08 52.6 1.6 69 107-177 3-71 (73)
105 PF07804 HipA_C: HipA-like C-t 96.2 0.0018 4E-08 54.4 1.0 39 404-443 39-77 (79)
106 PF06702 DUF1193: Protein of u 95.9 0.0045 9.7E-08 62.0 2.5 43 406-450 90-132 (221)
107 KOG1769 Ubiquitin-like protein 95.9 0.039 8.5E-07 48.6 7.8 77 28-105 19-96 (99)
108 cd05167 PI4Kc_III_alpha Phosph 95.8 0.056 1.2E-06 57.2 10.2 143 408-574 152-294 (311)
109 cd05168 PI4Kc_III_beta Phospho 95.7 0.11 2.3E-06 54.7 11.5 143 408-574 133-276 (293)
110 cd00895 PI3Kc_C2_beta Phosphoi 95.5 0.16 3.5E-06 54.7 12.2 144 408-573 195-339 (354)
111 KOG0906 Phosphatidylinositol 3 95.3 0.18 3.9E-06 57.4 12.2 142 406-574 684-826 (843)
112 cd00893 PI4Kc_III Phosphoinosi 95.3 0.17 3.6E-06 53.2 11.4 141 408-574 131-272 (289)
113 PF10302 DUF2407: DUF2407 ubiq 95.1 0.029 6.4E-07 49.5 4.6 51 116-166 12-64 (97)
114 KOG4495 RNA polymerase II tran 95.1 0.021 4.7E-07 49.8 3.5 51 116-168 12-64 (110)
115 KOG0013 Uncharacterized conser 95.1 0.026 5.6E-07 55.9 4.4 67 29-96 147-213 (231)
116 PF08817 YukD: WXG100 protein 95.0 0.04 8.7E-07 46.4 4.9 68 30-98 3-78 (79)
117 KOG1872 Ubiquitin-specific pro 95.0 0.036 7.8E-07 60.7 5.7 70 108-180 6-76 (473)
118 cd00896 PI3Kc_III Phosphoinosi 94.9 0.24 5.1E-06 53.4 11.4 142 407-575 193-335 (350)
119 PF11470 TUG-UBL1: GLUT4 regul 94.8 0.074 1.6E-06 43.6 5.6 64 34-98 2-65 (65)
120 PF13019 Telomere_Sde2: Telome 94.7 0.088 1.9E-06 50.6 6.8 76 30-105 1-88 (162)
121 cd00891 PI3Kc Phosphoinositide 94.6 0.24 5.2E-06 53.4 10.5 142 408-574 195-338 (352)
122 PF08817 YukD: WXG100 protein 94.5 0.068 1.5E-06 45.0 4.9 71 106-176 3-78 (79)
123 PF10302 DUF2407: DUF2407 ubiq 94.5 0.076 1.6E-06 46.9 5.4 47 40-87 13-63 (97)
124 cd05177 PI3Kc_C2_gamma Phospho 94.2 0.44 9.5E-06 51.4 11.6 42 407-452 194-235 (354)
125 cd00894 PI3Kc_IB_gamma Phospho 94.0 0.36 7.8E-06 52.3 10.4 143 408-574 204-350 (365)
126 cd05174 PI3Kc_IA_delta Phospho 93.9 0.43 9.3E-06 51.6 10.8 143 408-574 200-346 (361)
127 PF11470 TUG-UBL1: GLUT4 regul 93.9 0.15 3.3E-06 41.8 5.6 63 112-176 3-65 (65)
128 COG5417 Uncharacterized small 93.7 0.27 5.7E-06 41.3 6.7 68 30-98 5-80 (81)
129 PF00789 UBX: UBX domain; Int 93.7 0.26 5.7E-06 41.3 7.0 72 27-98 4-80 (82)
130 cd05166 PI3Kc_II Phosphoinosit 93.4 0.64 1.4E-05 50.2 11.1 143 407-573 193-338 (353)
131 KOG1769 Ubiquitin-like protein 93.4 0.44 9.5E-06 42.1 8.0 73 106-180 21-93 (99)
132 KOG0013 Uncharacterized conser 93.1 0.16 3.4E-06 50.5 5.3 64 113-178 154-219 (231)
133 KOG3206 Alpha-tubulin folding 93.0 0.16 3.5E-06 50.4 5.3 71 30-100 2-80 (234)
134 PF00789 UBX: UBX domain; Int 92.6 0.36 7.7E-06 40.5 6.2 70 105-176 6-80 (82)
135 cd05124 AFK Actin-Fragmin Kina 92.4 0.27 5.9E-06 49.9 6.1 61 384-445 94-172 (238)
136 PF09192 Act-Frag_cataly: Acti 92.4 0.054 1.2E-06 56.2 1.1 140 267-449 32-209 (275)
137 cd05173 PI3Kc_IA_beta Phosphoi 91.9 0.74 1.6E-05 49.8 9.1 142 408-573 200-345 (362)
138 cd05165 PI3Kc_I Phosphoinositi 91.8 0.93 2E-05 49.2 9.7 142 408-573 204-350 (366)
139 cd05176 PI3Kc_C2_alpha Phospho 91.1 2 4.4E-05 46.3 11.3 42 407-452 193-234 (353)
140 smart00166 UBX Domain present 90.6 1.1 2.4E-05 37.6 7.1 71 28-98 3-78 (80)
141 smart00166 UBX Domain present 90.4 0.88 1.9E-05 38.2 6.4 70 105-176 4-78 (80)
142 cd01770 p47_UBX p47-like ubiqu 90.2 0.89 1.9E-05 38.5 6.2 69 106-175 5-76 (79)
143 PF13019 Telomere_Sde2: Telome 90.1 0.94 2E-05 43.6 6.9 72 106-179 1-84 (162)
144 cd01770 p47_UBX p47-like ubiqu 89.9 1.3 2.7E-05 37.6 6.9 67 29-95 4-74 (79)
145 KOG1639 Steroid reductase requ 89.1 0.46 9.9E-06 48.5 4.2 67 30-97 1-75 (297)
146 PF14533 USP7_C2: Ubiquitin-sp 88.7 1.5 3.3E-05 43.9 7.6 112 28-142 19-159 (213)
147 COG5227 SMT3 Ubiquitin-like pr 87.7 1.2 2.5E-05 38.8 5.1 73 27-100 22-95 (103)
148 cd05175 PI3Kc_IA_alpha Phospho 87.3 5.3 0.00012 43.4 11.1 41 408-452 203-243 (366)
149 cd01772 SAKS1_UBX SAKS1-like U 87.1 2.3 4.9E-05 35.9 6.6 68 106-176 5-77 (79)
150 KOG0903 Phosphatidylinositol 4 87.1 0.61 1.3E-05 54.0 4.0 68 408-484 687-754 (847)
151 PF14836 Ubiquitin_3: Ubiquiti 86.6 4.4 9.5E-05 35.3 8.2 66 39-105 14-84 (88)
152 PF09379 FERM_N: FERM N-termin 85.9 2.9 6.3E-05 34.5 6.6 69 110-179 1-75 (80)
153 KOG0012 DNA damage inducible p 85.5 0.9 2E-05 48.6 4.1 76 30-105 1-80 (380)
154 KOG4583 Membrane-associated ER 85.3 0.29 6.3E-06 51.7 0.3 72 107-178 11-86 (391)
155 PF15044 CLU_N: Mitochondrial 85.2 1.3 2.8E-05 37.3 4.2 56 122-178 1-57 (76)
156 cd01767 UBX UBX (ubiquitin reg 85.0 3.5 7.6E-05 34.2 6.7 65 107-174 4-73 (77)
157 COG5417 Uncharacterized small 84.6 2.8 6.1E-05 35.3 5.7 66 111-176 12-80 (81)
158 cd01767 UBX UBX (ubiquitin reg 84.4 4.8 0.0001 33.4 7.2 64 30-94 3-71 (77)
159 PF12436 USP7_ICP0_bdg: ICP0-b 84.1 4.1 8.8E-05 41.8 8.1 124 25-151 64-223 (249)
160 cd01774 Faf1_like2_UBX Faf1 ik 82.7 5 0.00011 34.5 6.8 69 105-176 4-82 (85)
161 cd01774 Faf1_like2_UBX Faf1 ik 82.5 6 0.00013 34.0 7.2 71 27-98 2-82 (85)
162 cd01772 SAKS1_UBX SAKS1-like U 82.4 4.7 0.0001 33.9 6.5 69 29-98 4-77 (79)
163 PF15044 CLU_N: Mitochondrial 82.3 1.8 3.9E-05 36.4 3.8 58 45-103 1-60 (76)
164 KOG1639 Steroid reductase requ 82.1 1.8 3.9E-05 44.3 4.4 69 106-176 1-76 (297)
165 PTZ00303 phosphatidylinositol 82.1 0.59 1.3E-05 54.2 1.1 42 406-451 1135-1176(1374)
166 PRK09775 putative DNA-binding 80.8 0.87 1.9E-05 50.6 1.9 39 405-443 327-365 (442)
167 PF11620 GABP-alpha: GA-bindin 80.3 3 6.4E-05 36.1 4.4 61 40-101 4-64 (88)
168 cd06406 PB1_P67 A PB1 domain i 78.9 6.9 0.00015 33.5 6.2 45 31-76 4-48 (80)
169 cd01771 Faf1_UBX Faf1 UBX doma 78.0 10 0.00022 32.2 7.1 71 28-99 3-78 (80)
170 cd06407 PB1_NLP A PB1 domain i 78.0 8.3 0.00018 33.0 6.6 45 30-74 1-46 (82)
171 smart00146 PI3Kc Phosphoinosit 76.6 1.2 2.5E-05 44.1 1.1 42 407-452 92-133 (202)
172 cd05169 PIKKc_TOR TOR (Target 76.5 1.5 3.2E-05 45.6 1.9 42 406-450 171-212 (280)
173 KOG1235 Predicted unusual prot 76.2 1.8 3.8E-05 49.3 2.5 39 412-450 316-354 (538)
174 cd01773 Faf1_like1_UBX Faf1 ik 75.3 15 0.00032 31.6 7.3 71 28-99 4-79 (82)
175 KOG4250 TANK binding protein k 74.9 6.9 0.00015 45.6 6.8 50 30-79 314-365 (732)
176 PF11620 GABP-alpha: GA-bindin 74.9 9.8 0.00021 33.0 6.1 60 118-179 5-64 (88)
177 PRK08364 sulfur carrier protei 74.8 15 0.00032 30.2 7.0 63 32-104 5-69 (70)
178 KOG0902 Phosphatidylinositol 4 73.4 1.3 2.9E-05 54.6 0.7 41 408-452 1644-1684(1803)
179 PRK06437 hypothetical protein; 73.3 14 0.0003 30.2 6.5 61 34-104 5-66 (67)
180 cd00754 MoaD Ubiquitin domain 73.2 12 0.00026 30.7 6.3 61 39-105 16-80 (80)
181 cd05172 PIKKc_DNA-PK DNA-depen 73.2 2.5 5.5E-05 43.0 2.6 43 407-452 127-169 (235)
182 smart00666 PB1 PB1 domain. Pho 73.1 15 0.00033 30.4 6.9 46 30-75 2-47 (81)
183 cd01773 Faf1_like1_UBX Faf1 ik 72.6 15 0.00032 31.6 6.7 68 106-176 6-78 (82)
184 PF14453 ThiS-like: ThiS-like 71.5 7.3 0.00016 31.2 4.3 54 30-99 1-54 (57)
185 COG5227 SMT3 Ubiquitin-like pr 71.0 10 0.00022 33.2 5.3 68 107-176 26-93 (103)
186 cd05171 PIKKc_ATM Ataxia telan 70.6 2.7 5.9E-05 43.8 2.2 44 406-452 171-214 (279)
187 cd00892 PIKKc_ATR ATR (Ataxia 70.6 2.7 5.8E-05 42.8 2.1 43 407-452 130-172 (237)
188 PF15051 FAM198: FAM198 protei 70.0 18 0.00039 38.3 7.9 114 324-450 74-243 (326)
189 KOG0904 Phosphatidylinositol 3 69.7 3.8 8.2E-05 48.5 3.2 37 411-451 918-954 (1076)
190 COG0661 AarF Predicted unusual 69.3 10 0.00022 43.1 6.5 92 417-525 285-376 (517)
191 cd00142 PI3Kc_like Phosphoinos 65.9 3.7 8.1E-05 41.1 2.0 67 407-481 119-185 (219)
192 KOG0905 Phosphoinositide 3-kin 64.5 5.3 0.00012 48.8 3.1 38 410-451 1190-1227(1639)
193 PRK06488 sulfur carrier protei 63.4 24 0.00051 28.3 5.9 62 34-104 3-64 (65)
194 PF00564 PB1: PB1 domain; Int 62.5 33 0.0007 28.4 6.8 45 30-74 2-47 (84)
195 PF08337 Plexin_cytopl: Plexin 61.4 9.3 0.0002 43.6 4.2 78 27-104 187-292 (539)
196 cd05164 PIKKc Phosphoinositide 60.7 3.8 8.2E-05 41.3 0.9 43 407-452 122-164 (222)
197 cd01771 Faf1_UBX Faf1 UBX doma 60.6 33 0.00072 29.1 6.5 68 106-176 5-77 (80)
198 PLN02799 Molybdopterin synthas 60.1 31 0.00067 28.8 6.3 70 30-105 2-82 (82)
199 cd05170 PIKKc_SMG1 Suppressor 58.1 4.9 0.00011 42.5 1.2 43 406-451 199-241 (307)
200 PF12754 Blt1: Cell-cycle cont 57.0 3.5 7.7E-05 43.5 0.0 68 23-91 72-160 (309)
201 KOG4583 Membrane-associated ER 55.2 6.2 0.00013 42.1 1.4 63 28-91 8-75 (391)
202 smart00295 B41 Band 4.1 homolo 55.0 47 0.001 31.8 7.5 62 106-168 4-71 (207)
203 cd06408 PB1_NoxR The PB1 domai 54.2 69 0.0015 27.9 7.4 45 29-74 2-46 (86)
204 PF10790 DUF2604: Protein of U 53.9 47 0.001 27.4 5.9 66 114-179 4-71 (76)
205 PRK05863 sulfur carrier protei 53.9 33 0.00071 27.7 5.2 62 34-104 3-64 (65)
206 cd05992 PB1 The PB1 domain is 53.8 37 0.00079 27.9 5.7 45 31-75 2-47 (81)
207 KOG2086 Protein tyrosine phosp 53.6 42 0.00091 36.6 7.3 68 29-96 305-376 (380)
208 cd06406 PB1_P67 A PB1 domain i 52.9 24 0.00051 30.3 4.3 38 117-156 12-49 (80)
209 KOG3206 Alpha-tubulin folding 52.4 28 0.0006 35.0 5.3 60 118-179 15-81 (234)
210 cd01760 RBD Ubiquitin-like dom 51.8 41 0.00089 28.1 5.5 43 33-75 3-46 (72)
211 cd00754 MoaD Ubiquitin domain 51.7 57 0.0012 26.6 6.5 56 117-177 17-74 (80)
212 PF09379 FERM_N: FERM N-termin 51.4 78 0.0017 25.9 7.3 56 35-91 3-65 (80)
213 cd06409 PB1_MUG70 The MUG70 pr 51.4 26 0.00056 30.4 4.4 45 108-152 3-48 (86)
214 PRK06083 sulfur carrier protei 50.4 71 0.0015 27.5 6.9 69 28-104 15-83 (84)
215 PF10790 DUF2604: Protein of U 50.0 41 0.00088 27.8 5.0 65 36-101 3-71 (76)
216 TIGR01682 moaD molybdopterin c 49.8 57 0.0012 27.1 6.2 61 39-105 16-80 (80)
217 cd06407 PB1_NLP A PB1 domain i 49.1 45 0.00098 28.5 5.5 43 113-156 7-49 (82)
218 smart00455 RBD Raf-like Ras-bi 48.5 51 0.0011 27.3 5.6 40 36-75 7-46 (70)
219 TIGR01687 moaD_arch MoaD famil 47.7 59 0.0013 27.4 6.1 62 39-105 16-88 (88)
220 smart00455 RBD Raf-like Ras-bi 47.4 33 0.00072 28.4 4.3 44 109-154 3-46 (70)
221 PRK06437 hypothetical protein; 46.7 82 0.0018 25.7 6.5 53 114-177 9-61 (67)
222 cd01760 RBD Ubiquitin-like dom 46.6 32 0.00069 28.8 4.1 44 109-154 3-46 (72)
223 PF14453 ThiS-like: ThiS-like 46.6 40 0.00088 27.1 4.5 48 115-177 7-54 (57)
224 KOG0012 DNA damage inducible p 45.9 19 0.00041 38.9 3.3 68 114-183 11-80 (380)
225 PRK07440 hypothetical protein; 45.7 1E+02 0.0022 25.4 6.9 65 32-104 5-69 (70)
226 cd00565 ThiS ThiaminS ubiquiti 45.2 48 0.001 26.5 4.9 63 35-105 3-65 (65)
227 PRK05659 sulfur carrier protei 45.1 84 0.0018 25.0 6.3 63 34-104 3-65 (66)
228 smart00295 B41 Band 4.1 homolo 44.4 1.2E+02 0.0026 28.9 8.5 39 28-66 2-41 (207)
229 KOG0007 Splicing factor 3a, su 44.2 12 0.00025 40.3 1.5 56 29-85 281-339 (341)
230 COG2104 ThiS Sulfur transfer p 44.1 92 0.002 25.8 6.4 66 31-104 2-67 (68)
231 KOG4250 TANK binding protein k 43.4 46 0.001 39.1 6.1 43 113-157 322-364 (732)
232 PF02597 ThiS: ThiS family; I 41.7 68 0.0015 25.9 5.4 63 40-105 13-77 (77)
233 PF08337 Plexin_cytopl: Plexin 41.7 48 0.001 38.0 5.8 68 114-181 200-291 (539)
234 cd06411 PB1_p51 The PB1 domain 41.7 78 0.0017 27.1 5.7 35 40-74 8-42 (78)
235 TIGR01683 thiS thiamine biosyn 39.7 74 0.0016 25.4 5.2 62 35-104 2-63 (64)
236 PHA02537 M terminase endonucle 39.6 6.7 0.00015 40.0 -1.1 42 439-480 106-156 (230)
237 cd06396 PB1_NBR1 The PB1 domai 39.6 1E+02 0.0023 26.5 6.2 35 31-65 2-38 (81)
238 cd06409 PB1_MUG70 The MUG70 pr 39.5 70 0.0015 27.8 5.2 32 35-66 7-38 (86)
239 cd05163 TRRAP TRansformation/t 38.8 15 0.00032 37.8 1.2 42 407-451 145-186 (253)
240 PF00788 RA: Ras association ( 38.8 78 0.0017 26.3 5.5 35 117-151 18-52 (93)
241 TIGR02958 sec_mycoba_snm4 secr 38.1 94 0.002 34.8 7.4 72 31-103 4-82 (452)
242 PRK08364 sulfur carrier protei 38.0 1.2E+02 0.0027 24.7 6.3 50 117-177 15-64 (70)
243 KOG0608 Warts/lats-like serine 37.4 26 0.00057 40.9 2.9 39 405-452 742-780 (1034)
244 KOG2086 Protein tyrosine phosp 34.8 37 0.00079 37.1 3.4 69 106-175 306-377 (380)
245 smart00666 PB1 PB1 domain. Pho 34.7 76 0.0016 26.1 4.7 40 114-155 9-48 (81)
246 PRK06944 sulfur carrier protei 34.4 1.7E+02 0.0036 23.1 6.4 62 34-104 3-64 (65)
247 smart00144 PI3K_rbd PI3-kinase 34.3 1.2E+02 0.0026 27.1 6.1 66 115-180 28-105 (108)
248 cd01817 RGS12_RBD Ubiquitin do 33.7 1E+02 0.0022 26.0 5.1 40 37-76 8-47 (73)
249 KOG3439 Protein conjugation fa 33.5 1.3E+02 0.0029 27.4 6.1 50 27-76 28-82 (116)
250 PF14836 Ubiquitin_3: Ubiquiti 33.1 2.3E+02 0.005 24.8 7.4 61 116-179 14-80 (88)
251 PRK08053 sulfur carrier protei 33.0 1.8E+02 0.0039 23.3 6.5 63 34-104 3-65 (66)
252 PF02597 ThiS: ThiS family; I 32.6 58 0.0013 26.3 3.6 61 114-177 11-71 (77)
253 cd01768 RA RA (Ras-associating 32.0 2.2E+02 0.0047 23.7 7.1 37 115-151 12-48 (87)
254 PF07924 NuiA: Nuclease A inhi 31.9 20 0.00044 33.5 0.8 38 445-484 16-53 (133)
255 cd06398 PB1_Joka2 The PB1 doma 31.8 1.8E+02 0.0039 25.3 6.7 44 31-74 2-51 (91)
256 TIGR01682 moaD molybdopterin c 31.5 2.1E+02 0.0046 23.6 6.9 56 117-177 17-74 (80)
257 PF07805 HipA_N: HipA-like N-t 31.5 37 0.0008 28.3 2.3 68 261-364 3-70 (81)
258 PRK07696 sulfur carrier protei 31.3 1.9E+02 0.0042 23.4 6.4 63 34-104 3-66 (67)
259 KOG3316 Transport protein part 31.2 15 0.00032 35.2 -0.3 59 273-337 94-152 (163)
260 PRK04750 ubiB putative ubiquin 30.0 30 0.00065 39.6 1.9 38 413-450 276-313 (537)
261 PF00788 RA: Ras association ( 29.5 1.6E+02 0.0034 24.4 5.8 33 40-72 18-52 (93)
262 PF14451 Ub-Mut7C: Mut7-C ubiq 28.9 1.3E+02 0.0028 25.7 5.1 53 38-100 22-75 (81)
263 cd01768 RA RA (Ras-associating 27.6 2E+02 0.0044 23.9 6.2 49 38-86 12-68 (87)
264 KOG0892 Protein kinase ATM/Tel 27.1 37 0.00079 45.2 2.1 48 407-457 2616-2663(2806)
265 PF14533 USP7_C2: Ubiquitin-sp 26.8 55 0.0012 32.8 2.9 40 29-68 115-162 (213)
266 PRK10359 lipopolysaccharide co 26.2 2.2E+02 0.0047 29.1 7.2 54 381-447 117-180 (232)
267 PF12754 Blt1: Cell-cycle cont 24.8 24 0.00053 37.4 0.0 41 125-167 103-158 (309)
268 PLN02799 Molybdopterin synthas 24.7 3.1E+02 0.0068 22.6 6.8 57 116-177 19-76 (82)
269 COG5100 NPL4 Nuclear pore prot 24.7 2.4E+02 0.0052 31.3 7.3 70 108-178 3-78 (571)
270 COG5032 TEL1 Phosphatidylinosi 24.5 30 0.00065 45.9 0.7 45 406-453 1932-1976(2105)
271 cd06397 PB1_UP1 Uncharacterize 24.0 2.4E+02 0.0053 24.3 5.8 44 31-74 2-45 (82)
272 cd06410 PB1_UP2 Uncharacterize 24.0 1.8E+02 0.0039 25.7 5.3 38 36-74 20-57 (97)
273 PF10209 DUF2340: Uncharacteri 23.9 1.2E+02 0.0025 28.2 4.1 55 44-98 21-105 (122)
274 PF08671 SinI: Anti-repressor 23.7 62 0.0013 22.7 1.8 22 509-530 6-27 (30)
275 PF04639 Baculo_E56: Baculovir 23.5 95 0.002 32.8 3.9 35 240-284 121-155 (305)
276 smart00314 RA Ras association 23.3 3.5E+02 0.0076 22.6 6.9 55 32-86 5-70 (90)
277 PF02196 RBD: Raf-like Ras-bin 23.1 2.5E+02 0.0054 23.2 5.7 39 37-75 9-47 (71)
278 cd01787 GRB7_RA RA (RAS-associ 22.0 1.9E+02 0.0042 25.1 4.9 59 108-167 5-69 (85)
279 TIGR01687 moaD_arch MoaD famil 21.9 3.5E+02 0.0075 22.6 6.6 58 116-177 16-82 (88)
280 cd00194 UBA Ubiquitin Associat 21.5 1E+02 0.0023 21.6 2.8 32 485-517 3-34 (38)
281 cd01775 CYR1_RA Ubiquitin doma 21.2 4.6E+02 0.01 23.4 7.2 37 30-66 3-40 (97)
282 cd06411 PB1_p51 The PB1 domain 21.2 1.4E+02 0.0029 25.6 3.8 37 116-154 7-43 (78)
283 PRK01777 hypothetical protein; 21.2 3.8E+02 0.0083 23.5 6.8 65 28-102 2-77 (95)
284 KOG4261 Talin [Cytoskeleton] 21.1 2.2E+02 0.0047 34.2 6.5 124 31-159 5-137 (1003)
285 KOG4572 Predicted DNA-binding 20.0 2.1E+02 0.0046 34.4 6.1 80 113-194 2-85 (1424)
No 1
>KOG2381 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-65 Score=518.02 Aligned_cols=280 Identities=44% Similarity=0.721 Sum_probs=256.2
Q ss_pred HHHHHHHhcCCCcccccCCCCcEEEEEcCCCCeeEEEEecCCCCCcccCCCCCCCCCCCC-CCccCCcccCCchhh-hhh
Q 008120 253 NSTFDGLERGNKPIRSSDGTGGTYFMQDSTGHEYVSVFKPIDEEPKAVNNPRGLPVSLDG-EGLKRGTRVGEGALR-EVA 330 (577)
Q Consensus 253 ~~~~~~~~~g~~p~~~~~Gs~gsyf~~~~~g~~~~aVFKP~deEp~~~~nP~~~~~~~~~-~~~~~g~~~geg~~r-EvA 330 (577)
.++..|++.|+.|++++.|++|+|||++..|. .+|||||+|||||+.+||+|+++...+ +|+++||++|+++.| |+|
T Consensus 2 ~~~~~a~~~g~~p~~~~~g~~gayf~~~~~~~-~~~v~kP~deEp~~~~Npk~~~~~~~g~~~~~~~~~v~~~g~~~E~a 80 (286)
T KOG2381|consen 2 REAIEAIEKGIFPELLPLGSGGAYFMQDTSGW-IVGVFKPKDEEPYARNNPKGTKVLQRGQCGCKRSCLVGNSGYRSEAA 80 (286)
T ss_pred chHHHHhhcCCCcccccCCCchhHHHhccccc-eeeccCCCcccccccCCCccCchhhccccccccceeccCccccchhh
Confidence 56889999999999999999999999999996 599999999999999999999985544 489999999777777 999
Q ss_pred hhhhccCCCCCCCCcccccCCCCCCceeEEEeccCCccCCccccc--ccCCCcceeEeeeccCCCCCCCCCCCCcchhhh
Q 008120 331 AYVLDHPKSGPRSLSGETMGFAGIPPTVMVRCLHEGFNHPEGYEH--ALKNVKLGSLQMFMKNDGNCEDMGPGAFPVEEV 408 (577)
Q Consensus 331 AyllD~~~~~~~~~~~~~lgf~~VP~T~~v~~~~~~f~~~~~~~~--~~~~~k~GSlQ~fv~~~~~~~~~~~~~f~~~ev 408 (577)
||||||+ +|+.||+|.+++++|+.|||++++.. .....|+||+|+||++ .++.|++++.|+++|+
T Consensus 81 ayLlD~~------------~~~~Vp~t~~v~i~~~~f~~~~~~~~~~~~~~~k~gs~q~Fve~-~~~~d~~~~~F~~~e~ 147 (286)
T KOG2381|consen 81 AYLLDHP------------EFNDVPRTALVKITHFTFNYNAAFLSKRQGKKSKIGSLQLFVEG-YSAADYGLRRFEAEEV 147 (286)
T ss_pred hhccCcc------------ccCCCCceeeEEEeeecccccccceecccccccchhhHHHhhcC-ccccceeEEecccccc
Confidence 9999985 89999999999999999999987532 2333799999999999 8888999999999999
Q ss_pred hhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCCCChhHHHHHHcCChHHHHH
Q 008120 409 HKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDAEQDIE 488 (577)
Q Consensus 409 ~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~Pfs~~~~~~i~~Ld~~~d~~ 488 (577)
|||+||||||+|||||+|||||++..........+|||||||....+++|+|+|||||+.|||+++++|| |++..|++
T Consensus 148 hkivvlD~ri~NtDRh~~N~lvk~~~~~~~~~~~~Dhgl~fP~~~~d~~f~W~~~pqa~~pfs~~~~~yi--L~~~~d~~ 225 (286)
T KOG2381|consen 148 HKIVVLDIRIRNTDRHAGNWLVKKEPTLEQAAILGDHGLCFPEKHPDEWFEWLYWPQAKIPFSEEIVDYI--LDPLTDCN 225 (286)
T ss_pred ceeEEEEEEeeccCCCCCceeEEeccCcccccccccCceeCcccCCccccchHHHHhhcccccHHHHhcc--CCcccCHH
Confidence 9999999999999999999999994433444566699999999999999999999999999999999999 99999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCChHHHHHHHHHhhcCC
Q 008120 489 LLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLP 553 (577)
Q Consensus 489 ~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~ 553 (577)
++| +++++++++++++|+|+|+++++|||+.+||.+|+|+.+.. |.+|.+|.+|...+.+
T Consensus 226 ~~r----~l~~~~~~~~~~~~~f~k~~~~~~l~~~~~g~~~~re~~~~-~~~~~~~~~~~~~~~~ 285 (286)
T KOG2381|consen 226 LLR----ELPEDLLRLFKVDTGFLKKAFEKQLSVMRIGILNLREALKD-SKLEQLCVEAKASVVE 285 (286)
T ss_pred HHH----HhHHHHHHHHhhchhhhHHHHHhCchHhhccceehHHHHhh-CccHHHHHhhhhcccC
Confidence 999 68899999999999999999999999999999999998877 9999999999877654
No 2
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=100.00 E-value=1.3e-45 Score=363.81 Aligned_cols=197 Identities=29% Similarity=0.484 Sum_probs=161.2
Q ss_pred cccCCCCcEEEEEc-CCCCeeEEEEecCCCCCcccCCCCCCCCCCCCCCccCCcccCCchhhhhhhhhhccCCCCCCCCc
Q 008120 267 RSSDGTGGTYFMQD-STGHEYVSVFKPIDEEPKAVNNPRGLPVSLDGEGLKRGTRVGEGALREVAAYVLDHPKSGPRSLS 345 (577)
Q Consensus 267 ~~~~Gs~gsyf~~~-~~g~~~~aVFKP~deEp~~~~nP~~~~~~~~~~~~~~g~~~geg~~rEvAAyllD~~~~~~~~~~ 345 (577)
|+.++||+||+|.- .+|....|||||+.+|.++|+||+ ||| |.||+|||+||
T Consensus 11 ri~~aSN~t~~~~~~~~~~~~~~VYKPv~gErPLWDFpd-------------GtL----a~REvAAYlvs---------- 63 (253)
T TIGR03843 11 RLVDASNATLLCEVTLGGVSARAVYKPVRGERPLWDFPD-------------GTL----AGREVAAYLVS---------- 63 (253)
T ss_pred EEccccceeEEEEEecCCeeEEEEECCcCCccccccCCC-------------Cch----HHHHHHHHHHH----------
Confidence 67899999999994 345567899999999999999999 788 99999999997
Q ss_pred ccccCCCCCCceeEEEeccCCccCCcccccccCCCcceeEeeeccCCCC--------CCCCCCCCcch------------
Q 008120 346 GETMGFAGIPPTVMVRCLHEGFNHPEGYEHALKNVKLGSLQMFMKNDGN--------CEDMGPGAFPV------------ 405 (577)
Q Consensus 346 ~~~lgf~~VP~T~~v~~~~~~f~~~~~~~~~~~~~k~GSlQ~fv~~~~~--------~~~~~~~~f~~------------ 405 (577)
+++||++||+|+++ +| +.|+||+|+||+++.+ ++++++++|++
T Consensus 64 -~~lGw~~VPpTvlr----------DG------P~G~GmvQlwie~~~~~~lv~l~~~~~~~~g~~~v~~~~d~~g~~v~ 126 (253)
T TIGR03843 64 -EALGWGLVPPTVLR----------DG------PFGPGMVQLWIDPDDDPDLVDLVPAGEVPEGWLPVLRAEDEEGEPVV 126 (253)
T ss_pred -HHhCCCcCCCeeee----------cC------CCCCceEEEeccCCCccchhhcccccccCCccccccccccccCccee
Confidence 67999999999998 34 4799999999999754 56788899874
Q ss_pred ------hhhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCCCChhHHHHHH
Q 008120 406 ------EEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIK 479 (577)
Q Consensus 406 ------~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~Pfs~~~~~~i~ 479 (577)
.++|||+|||++|+|+|||+||||+++ +|+ ++|||||||||++.+ ++|++|+|+++|||+++++||+
T Consensus 127 l~h~d~~~l~riaVfDi~inNaDRk~GhiL~~~--dg~--l~~IDHGl~f~~~~k---lrtvlW~wag~Pls~e~l~~i~ 199 (253)
T TIGR03843 127 LVHADHPQLRRMAVFDALVNNADRKGGHVLPGP--DGR--VWGVDHGVCFHVEPK---LRTVLWGWAGEPLPAELLADLA 199 (253)
T ss_pred ecccccHHHhhhhhheeeeecCCCCCCcEeEcC--CCc--EEEecCceecCCCCc---ccccccccccCCCCHHHHHHHH
Confidence 259999999999999999999999988 565 999999999999755 5558999999999999999999
Q ss_pred cCChHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHHH
Q 008120 480 SLDAEQDIELLKFYGWNIP-LECARTLRISTMLLKK 514 (577)
Q Consensus 480 ~Ld~~~d~~~l~~~~~~~~-~~~~~~lr~~~~~Lk~ 514 (577)
+|+.+.+-.+=++..--|. +|..++.+.+..+|..
T Consensus 200 ~L~~~l~~~l~~~L~~llt~~Ei~Al~~R~~~Ll~~ 235 (253)
T TIGR03843 200 RLRDDLDGDLGRELAELLTPEEVAALRRRVDRLLET 235 (253)
T ss_pred HHHHhhcChHHHHHHHhCCHHHHHHHHHHHHHHHhC
Confidence 9998875432222111244 3444444455555543
No 3
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.66 E-value=1.9e-16 Score=140.33 Aligned_cols=92 Identities=17% Similarity=0.261 Sum_probs=86.8
Q ss_pred ccccccccccceeeeeccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCccccc
Q 008120 87 DYGVTGGNVLHLVLKLSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDI 166 (577)
Q Consensus 87 dygI~dgstL~LvlrLsd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy 166 (577)
-+++.+-.++|+.+++++.|+|+||+.+|+++.++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|+++|++|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip--~~~QrLi~~Gk~L~D~~tL~dy 86 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIP--VAQQHLIWNNMELEDEYCLNDY 86 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--hHHEEEEECCEECCCCCcHHHc
Confidence 45666778999999999999999999999999999999999999999999999987 9999999999999999999999
Q ss_pred CCCCCCEEEEEEec
Q 008120 167 CKDNDAVIHLLVQK 180 (577)
Q Consensus 167 ~I~~~svI~Lvvrk 180 (577)
+|+++++|||+++-
T Consensus 87 ~I~~~stL~l~~~l 100 (103)
T cd01802 87 NISEGCTLKLVLAM 100 (103)
T ss_pred CCCCCCEEEEEEec
Confidence 99999999998873
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.63 E-value=5.3e-16 Score=128.93 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=69.8
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 30 ILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 30 M~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
|+|+|+. +++++++|++++||++||++|++.+|+|+++|+|+|+|++|. |+.+|++|||+++++||+++++.|+
T Consensus 1 mqi~vk~-~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~-D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRA-QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLE-DDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEEC-CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence 7999954 478999999999999999999999999999999999999999 9999999999999999999998764
No 5
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.62 E-value=9.4e-16 Score=135.84 Aligned_cols=78 Identities=27% Similarity=0.510 Sum_probs=74.7
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
.+.|+|+| ++.|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.|+
T Consensus 25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~-D~~tL~dy~I~~~stL~l~~~l~GG 103 (103)
T cd01802 25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELE-DEYCLNDYNISEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEecCCC
Confidence 67899999 789999999999999999999999999999999999999999999 9999999999999999999998764
No 6
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.62 E-value=9.1e-16 Score=127.47 Aligned_cols=72 Identities=22% Similarity=0.426 Sum_probs=69.3
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeee
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrL 102 (577)
|+|+| +..|++++++|++++||++||++|++..|+|+++|+|+|+|++|. |+.+|++|||+++++|+|+++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~-d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALA-DDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECC-CCCCHHHCCCCCCCEEEEEEcC
Confidence 89999 689999999999999999999999999999999999999999999 8999999999999999999874
No 7
>PTZ00044 ubiquitin; Provisional
Probab=99.61 E-value=1.4e-15 Score=126.50 Aligned_cols=75 Identities=24% Similarity=0.526 Sum_probs=72.1
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
|+|+| +++|++++++|++++||++||.+|++..|+|+++|+|+|+|++|. |+.+|++|+|+++++||+++++.|+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMS-DDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEcc-CCCcHHHcCCCCCCEEEEEEEccCC
Confidence 89999 789999999999999999999999999999999999999999999 9999999999999999999998764
No 8
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.60 E-value=1.3e-15 Score=126.45 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=70.2
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
|+|+||+.+|+++.++|++++||.+||++|+++.|++ +++|+|+|+|++|+|+++|++|+|+++++|||++|.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~--~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVP--EEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 6899999999999999999999999999999999987 999999999999999999999999999999998873
No 9
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.57 E-value=4.7e-15 Score=124.92 Aligned_cols=73 Identities=16% Similarity=0.343 Sum_probs=68.9
Q ss_pred EEEEE-EeCCeE-EEEE-eCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeec
Q 008120 30 ILIYL-SVSGSL-VPMR-VLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLS 103 (577)
Q Consensus 30 M~I~V-tl~G~~-~~le-V~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLs 103 (577)
|+|+| ++.|++ ++++ +.+++||++||++|++.+|+|+++|||+|+|+.|. |+.+|++|||+++++|+|++++.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~-D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQME-DGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECC-CCCCHHHcCCCCCCEEEEEEecC
Confidence 89999 788986 6895 89999999999999999999999999999999999 99999999999999999999874
No 10
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.55 E-value=6.5e-15 Score=122.42 Aligned_cols=73 Identities=19% Similarity=0.314 Sum_probs=69.2
Q ss_pred EEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 32 IYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 32 I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
|+| ++.|++++++|++++||++||++|++..|+|+++|+|+|+|++|. |+.+|++|||+++++|+|++++.++
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~-D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPME-DEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCCHHHcCCCCCCEEEEEEEccCC
Confidence 578 688999999999999999999999999999999999999999999 8999999999999999999998764
No 11
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.55 E-value=9.9e-15 Score=120.77 Aligned_cols=75 Identities=32% Similarity=0.617 Sum_probs=71.8
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
|+|+| +.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|. |+.+|++|||++|++|++++++.|+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEccCC
Confidence 89999 688999999999999999999999999999999999999999999 8999999999999999999998764
No 12
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.55 E-value=1.2e-14 Score=120.30 Aligned_cols=75 Identities=31% Similarity=0.620 Sum_probs=71.6
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
|+|+| +++|+++.++|++++||++||++|++..|+|++.|+|+|+|+.|. |+.+|++|+|++|++||++++++++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~-d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEcc-CCCCHHHcCCCCCCEEEEEEEccCC
Confidence 78999 688999999999999999999999999999999999999999998 8999999999999999999998764
No 13
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.54 E-value=1.1e-14 Score=122.72 Aligned_cols=73 Identities=27% Similarity=0.354 Sum_probs=69.0
Q ss_pred cccccccCCCce-eEEe-eccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 106 LLITVRTSCGKE-LEFH-IDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 106 m~I~Vrt~~Gk~-~~i~-Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
|+|+||+.+|++ +.++ +++++||.+||++|++..|++ +++|+|+|+|+.|+|+++|++|+|+++++|||++|.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~--~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVE--PECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCC--HHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence 789999999997 6895 899999999999999999987 999999999999999999999999999999999874
No 14
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.53 E-value=1.7e-14 Score=119.92 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=66.9
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
|+|+||+ ++++.++|++++||.+||++|+++.|++ +++|+|+|+|++|+|+++|++|+++++++|||++|-
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip--~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l 71 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGID--VEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRL 71 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCC--HHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEec
Confidence 6789998 4789999999999999999999999987 999999999999999999999999999999999873
No 15
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.52 E-value=2.4e-14 Score=120.50 Aligned_cols=76 Identities=21% Similarity=0.311 Sum_probs=71.3
Q ss_pred cEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecccc
Q 008120 29 SILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLL 106 (577)
Q Consensus 29 sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~m 106 (577)
.|+|+| +..|+.++++|++++||++||++|++..|+++++|+|+|+|+.|. |+ +|++|||++|++|+|+..+.++.
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~-d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLS-SG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCC-CC-cHHHcCCCCCCEEEEEeeccccC
Confidence 599999 678999999999999999999999999999999999999999999 77 99999999999999999887653
No 16
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.52 E-value=2e-14 Score=118.10 Aligned_cols=70 Identities=17% Similarity=0.305 Sum_probs=67.0
Q ss_pred cccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 108 ITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 108 I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
|+||+.+|+++.++|++++||.+||++|+++.|++ +++|+|+|+|++|+|+.+|++|+|+++++|||+.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVP--PDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCC--HHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 68999999999999999999999999999999987 89999999999999999999999999999999764
No 17
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.51 E-value=3.4e-14 Score=118.33 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=71.5
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecCC
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSA 182 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks~ 182 (577)
|+|+|++.+|+++.++|++++||.+||++|++..++..++++|+|+|+|+.|+|+.+|++|++++|++|++++++++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~~ 77 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKPK 77 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecCC
Confidence 68999999999999999999999999999999999822399999999999999999999999999999999988653
No 18
>PTZ00044 ubiquitin; Provisional
Probab=99.51 E-value=3.2e-14 Score=118.34 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=70.3
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
|+|+||+.+|+++.+++++++||.+||++|++..|++ +++|+|+|+|+.|+|+.+|++|+++++++||++++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGID--VKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQL 73 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEc
Confidence 6899999999999999999999999999999999987 999999999999999999999999999999999874
No 19
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.50 E-value=4e-14 Score=117.70 Aligned_cols=71 Identities=14% Similarity=0.253 Sum_probs=68.1
Q ss_pred cccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 108 ITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 108 I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
|+|||.+|+++.++|++++||.+||++|++..|++ +++|+|+|+|+.|+|+++|++|+|+++++|+|+++.
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~--~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l 71 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQ--ADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRL 71 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCC--HHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEc
Confidence 68999999999999999999999999999999986 999999999999999999999999999999998874
No 20
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.50 E-value=3.6e-14 Score=118.17 Aligned_cols=69 Identities=23% Similarity=0.190 Sum_probs=66.3
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCccccccccccccccee
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lv 99 (577)
|+|+| ++.|+.+.++|++++||++||++|++..|+|+++|||+|+|+.|. |+.+|++|||++|++|||.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~-D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFK-DHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCC-CCCCHHHcCCCCCCEEEEE
Confidence 88999 678999999999999999999999999999999999999999999 8999999999999999985
No 21
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.50 E-value=3.5e-14 Score=116.61 Aligned_cols=69 Identities=22% Similarity=0.467 Sum_probs=65.4
Q ss_pred EEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120 32 IYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 32 I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
|+| +..|++++++|++++||++||++|++..|+|+++|+|+|+|++|. |+.+|++|||+++++|||+.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~-d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELR-NTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEeC
Confidence 567 678999999999999999999999999999999999999999998 999999999999999999864
No 22
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=5.5e-15 Score=128.71 Aligned_cols=75 Identities=31% Similarity=0.611 Sum_probs=72.5
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
|++++ ++.|++.+++|+|++||.++|.+|+..+|+|+++|+|+|+|++|+ |..|+++|||+..+|||++++|.|+
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LE-D~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccc-cCCcccccCccchhhhhhhHHHhcC
Confidence 56777 899999999999999999999999999999999999999999999 9999999999999999999999887
No 23
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.48 E-value=7.5e-14 Score=116.24 Aligned_cols=72 Identities=19% Similarity=0.421 Sum_probs=68.4
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCC--ccccEEEEEcCeeccCCCCcccccccccccccceeeee
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGF--VVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gi--p~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrL 102 (577)
|+|+| +.+|+++.++|++++||++||++|++.+|+ |+++|+|+|+|++|. |+.+|++|||++|++|+++++-
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~-d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILK-DDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEcc-CCCCHHHcCCCCCCEEEEEEec
Confidence 89999 789999999999999999999999999999 999999999999999 8999999999999999988753
No 24
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.48 E-value=5.3e-14 Score=116.15 Aligned_cols=67 Identities=18% Similarity=0.336 Sum_probs=63.5
Q ss_pred EE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceee
Q 008120 33 YL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVL 100 (577)
Q Consensus 33 ~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvl 100 (577)
.| .++|++++++|++++||++||.+|++.+|+|+++|+|+|+|++|. |+.+|++|||+++++|||++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~-D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLT-DKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECC-CCCCHHHcCCCCCCEEEEEe
Confidence 45 467999999999999999999999999999999999999999999 99999999999999999986
No 25
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.48 E-value=6.8e-14 Score=115.52 Aligned_cols=68 Identities=25% Similarity=0.369 Sum_probs=65.4
Q ss_pred ccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 008120 109 TVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLV 178 (577)
Q Consensus 109 ~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvv 178 (577)
.||+.+|+++.++|++++||.+||++|++..|++ +++|+|+|+|+.|+|+.+|.+|+++++++|||++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~--~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVD--PCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCC--HHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 5789999999999999999999999999999987 9999999999999999999999999999999986
No 26
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.47 E-value=6.6e-14 Score=116.57 Aligned_cols=70 Identities=14% Similarity=0.090 Sum_probs=67.3
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
|.|+|++..|+.+.++|++++||++||++|+++.+++ +++|||+|+|+.|+|+.+|++|+++++++|||.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~--~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTR--PEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--hHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999976 999999999999999999999999999999985
No 27
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.46 E-value=1.3e-13 Score=114.05 Aligned_cols=73 Identities=27% Similarity=0.448 Sum_probs=69.9
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
|+|+|++.+|+++.++++++.||.+||++|++..+++ +++|+|+|+|+.|+|.++|++|++++|++|||+++.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~--~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~ 73 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLAL 73 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCC--hhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEc
Confidence 6899999999999999999999999999999999987 999999999999999999999999999999998874
No 28
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.46 E-value=1.3e-13 Score=112.91 Aligned_cols=71 Identities=27% Similarity=0.460 Sum_probs=67.6
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
|+|+| ++.|+++++++++++||++||++|++..|+|++.|+|+|+|+.|. |+.+|++|||++|++||++.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLK-DDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECC-CcCcHHHCCCCCCCEEEEEeC
Confidence 78999 688999999999999999999999999999999999999999999 899999999999999998764
No 29
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.46 E-value=1.3e-13 Score=113.99 Aligned_cols=73 Identities=22% Similarity=0.374 Sum_probs=70.0
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
|+|+||+.+|+.+.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|..+|++|+++++++||++++-
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCC--HHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 6899999999999999999999999999999999986 899999999999999999999999999999999873
No 30
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.44 E-value=2.1e-13 Score=111.67 Aligned_cols=72 Identities=24% Similarity=0.293 Sum_probs=68.8
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
|+|+||+.+|+++.++++++.||.+||++|++..|++ ++.|+|+|+|+.|+|..+|++|+++++++|||+.|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIP--VEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 6799999999999999999999999999999999986 89999999999999999999999999999999764
No 31
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.44 E-value=1.9e-13 Score=114.33 Aligned_cols=70 Identities=23% Similarity=0.423 Sum_probs=66.8
Q ss_pred EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 35 SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 35 tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
+++|++++++|++++||++||++|+..+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|++++.++
T Consensus 4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~-d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 4 KLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIK-DSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred ccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcC-CCCcHHHcCCCCCCEEEEEEecCCC
Confidence 468999999999999999999999999999999999999999999 8899999999999999999998775
No 32
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.43 E-value=1.7e-13 Score=115.65 Aligned_cols=74 Identities=23% Similarity=0.182 Sum_probs=70.4
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEE--EECCeecCCCCcccccCCCCCCEEEEEEecC
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEI--FCDGEKLDDQRLIDDICKDNDAVIHLLVQKS 181 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrL--if~Gr~LeD~~tLsdy~I~~~svI~Lvvrks 181 (577)
|.|+|++.+|+++.++++++.||.+||++|++..+++ +++|+| +|+|+.|+|+.+|++||++++++|+|++++-
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~--~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~ 78 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVP--AFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQNC 78 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCC--HHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 7899999999999999999999999999999999976 999999 8999999999999999999999999998853
No 33
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.42 E-value=2.7e-13 Score=114.44 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=68.2
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEE--EEcCeeccCCCCcccccccccccccceeee
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKL--VFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrL--if~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
|+|+| +..|+++.++|++++||++||++|++..|+|+++|+| +|+|+.|. |+.+|++|||++|++|+|+++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~-D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQ-DGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCC-CCCCHHHcCCCCCCEEEEEEE
Confidence 89999 6789999999999999999999999999999999999 89999999 889999999999999999987
No 34
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.42 E-value=3e-13 Score=111.45 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=66.3
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
+.|+|++.+|+ ..++++++.||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+++++++|||++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~--~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKAN--QEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCC--HHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 46899999997 5899999999999999999999976 89999999999999999999999999999999875
No 35
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.41 E-value=3.1e-13 Score=113.72 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=68.3
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
|+|+|++.+|+.+.++|+++.||.+||++|+++.+++ +++|+|+|+|+.|+|. +|++||++++++|+|+..-
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~--~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~ 73 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVP--KERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTV 73 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCC--hHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeec
Confidence 7899999999999999999999999999999999976 8999999999999999 9999999999999998653
No 36
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.41 E-value=3.6e-13 Score=110.98 Aligned_cols=70 Identities=19% Similarity=0.297 Sum_probs=64.9
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
|+|+| +..|+ ..+++++++||++||++|++..|+++++|+|+|+|+.|. |+.+|++|||++|++|||+++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~-d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILK-DTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcC-CCCcHHHcCCCCCCEEEEEEC
Confidence 57888 67786 589999999999999999999999999999999999999 899999999999999999874
No 37
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.41 E-value=3.9e-13 Score=111.13 Aligned_cols=67 Identities=27% Similarity=0.444 Sum_probs=61.4
Q ss_pred EEE-Ee-CCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCC-Cccccccccccccccee
Q 008120 32 IYL-SV-SGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNH-SLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 32 I~V-tl-~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~-~tL~dygI~dgstL~Lv 99 (577)
|+| +. .|+++.++|++++||++||++|++.+|+|+++|+|+|+|++|. |+ .+|++|||++|++|+|.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~-D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELV-DNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEcc-CCcccHHHcCCCCCCEEEEe
Confidence 456 45 7899999999999999999999999999999999999999998 55 78999999999999874
No 38
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.40 E-value=5.8e-13 Score=108.50 Aligned_cols=66 Identities=30% Similarity=0.621 Sum_probs=63.5
Q ss_pred eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeee
Q 008120 36 VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 36 l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrL 102 (577)
++|+.+.++|++++||.+||++|+...|+|++.|+|+|+|+.|. |+.+|++|||++|++|+|+++.
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~-d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELD-DDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEES-TTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeeccc-CcCcHHHcCCCCCCEEEEEEec
Confidence 57899999999999999999999999999999999999999997 9999999999999999998875
No 39
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.1e-13 Score=128.56 Aligned_cols=76 Identities=30% Similarity=0.597 Sum_probs=73.6
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecccc
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLL 106 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~m 106 (577)
|+|+| ++.+++++++|.+++||..+|.+||..+|||+++|||+|.|++|+ |..+|+||+|+..+||||+++++|+.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLe-dgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccc-cCCccccccccccceEEEEEEecCCc
Confidence 79999 899999999999999999999999999999999999999999999 89999999999999999999998874
No 40
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.40 E-value=6.2e-13 Score=108.30 Aligned_cols=68 Identities=28% Similarity=0.443 Sum_probs=64.8
Q ss_pred ccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 111 RTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 111 rt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
||.+|+.+.++|++++||.+||++|++..+++ +++|+|+|+|++|+|+.+|++|+++++++|+|++|+
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~--~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIP--PEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTST--GGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccc--cccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 57899999999999999999999999999986 999999999999999999999999999999998763
No 41
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.37 E-value=1.1e-12 Score=107.36 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=66.0
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceee
Q 008120 30 ILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVL 100 (577)
Q Consensus 30 M~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvl 100 (577)
|+|+|+..|+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|. |+.+|++|||++|++|+++.
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~-d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERD-DAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccC-ccCcHHHcCCCCCCEEEEec
Confidence 57888777999999999999999999999999999999999999999998 89999999999999998864
No 42
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3e-13 Score=106.20 Aligned_cols=69 Identities=29% Similarity=0.640 Sum_probs=66.5
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCccccccccccccccee
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lv 99 (577)
|.|.| +++|+.+.++++|+++|..+|++|++++|||+.+|||+|.|+++. |+.+-++|++.-|+++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~-DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMN-DDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhcccccc-ccccHHHhhhccceeEeeC
Confidence 67899 899999999999999999999999999999999999999999999 9999999999999999974
No 43
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.36 E-value=1.1e-12 Score=108.48 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=63.4
Q ss_pred cccccC-CCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCC-CcccccCCCCCCEEEE
Q 008120 108 ITVRTS-CGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQ-RLIDDICKDNDAVIHL 176 (577)
Q Consensus 108 I~Vrt~-~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~-~tLsdy~I~~~svI~L 176 (577)
|+|++. +|+++.++|++++||.+||++|++..|+| +++|+|+|+|+.|+|+ .+|++|+++++++|||
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip--~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIP--ASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCC--HHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence 578999 99999999999999999999999999987 9999999999999987 6899999999999997
No 44
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.36 E-value=9.7e-13 Score=111.02 Aligned_cols=72 Identities=21% Similarity=0.234 Sum_probs=63.6
Q ss_pred cccccccCCCcee--EEeeccCCchhhhHHHHHhhCC-CCCCCCceEEEECCeecCCCCcccccC--CCCCCEEEEEE
Q 008120 106 LLITVRTSCGKEL--EFHIDRYRNVGYLKQRIARKGK-GFVDVVDQEIFCDGEKLDDQRLIDDIC--KDNDAVIHLLV 178 (577)
Q Consensus 106 m~I~Vrt~~Gk~~--~i~Vd~~~TV~~LK~kI~~~~g-i~~p~~~QrLif~Gr~LeD~~tLsdy~--I~~~svI~Lvv 178 (577)
+.|+||+.+|+++ .++++++.||.+||++|++..+ .+ ++++|||+|+||+|+|+.+|++|. +.++.+|||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~-~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKP-LEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCC-ChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 5789999999984 4555899999999999999874 33 479999999999999999999996 99999999974
No 45
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.35 E-value=2e-12 Score=107.97 Aligned_cols=70 Identities=16% Similarity=0.246 Sum_probs=66.0
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEE---cCeeccCCCCcccccccccccccceee
Q 008120 30 ILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVF---GGRELARNHSLVKDYGVTGGNVLHLVL 100 (577)
Q Consensus 30 M~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif---~Gk~L~~D~~tL~dygI~dgstL~Lvl 100 (577)
|.|.|+..|+++.++|++++||++||++|++.+|+|+++|+|+| .|+.|. |+.+|++|+|++|++|+|+-
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~-D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAE-DDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCC-CCcCHHHcCCCCCCEEEEEe
Confidence 57888999999999999999999999999999999999999996 899999 99999999999999998863
No 46
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.9e-13 Score=105.03 Aligned_cols=70 Identities=27% Similarity=0.418 Sum_probs=67.4
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
|.|.|+|++|+++.++++++++|..+|++|.++.|+| |.+|||+|.|+++.|..+-.+|++..||++||+
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIP--p~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCC--chhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5688999999999999999999999999999999998 999999999999999999999999999999984
No 47
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.32 E-value=6.4e-12 Score=107.93 Aligned_cols=81 Identities=15% Similarity=0.315 Sum_probs=75.8
Q ss_pred CCCCCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeee
Q 008120 24 RSSSESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 24 ~~~~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrL 102 (577)
+..+..|+|+| +..|+.+.++|.+++|+..||.++++..|+++++|+|+|+|+.|. ++.|+++|++++|++|++++++
T Consensus 6 ~~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~-~~~T~~~l~m~d~d~I~v~l~l 84 (87)
T cd01763 6 GEISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIR-DNQTPDDLGMEDGDEIEVMLEQ 84 (87)
T ss_pred CCCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECC-CCCCHHHcCCCCCCEEEEEEec
Confidence 34577899999 688999999999999999999999999999999999999999999 9999999999999999999998
Q ss_pred ccc
Q 008120 103 SDL 105 (577)
Q Consensus 103 sd~ 105 (577)
.++
T Consensus 85 ~GG 87 (87)
T cd01763 85 TGG 87 (87)
T ss_pred ccC
Confidence 764
No 48
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.30 E-value=4e-12 Score=107.29 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=62.4
Q ss_pred cEEEEE-EeCCeE--EEEEeCCCCCHHHHHHHHHHhhC--CccccEEEEEcCeeccCCCCcccccc--cccccccceee
Q 008120 29 SILIYL-SVSGSL--VPMRVLETDSIESVKLRIQTCKG--FVVKKQKLVFGGRELARNHSLVKDYG--VTGGNVLHLVL 100 (577)
Q Consensus 29 sM~I~V-tl~G~~--~~leV~~sdTV~~LK~kI~~~~G--ip~~~QrLif~Gk~L~~D~~tL~dyg--I~dgstL~Lvl 100 (577)
.|.|+| +.+|+. +.+++++++||++||++|++..+ .++++|||||+||.|. |+.+|++|+ +.++.||||+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLk-D~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLP-DHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeecc-chhhHHHHhhcccCCceEEEEe
Confidence 378889 567877 66666999999999999999874 5589999999999999 999999996 99999999985
No 49
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.24 E-value=1.5e-11 Score=102.80 Aligned_cols=66 Identities=21% Similarity=0.247 Sum_probs=62.9
Q ss_pred CCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 113 SCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 113 ~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
.+|+++.++|++++||.+||++|+...|++ +++|+|+|+|+.|+|+++|++|+++++++||++++.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip--~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMP--AGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEec
Confidence 468999999999999999999999999987 999999999999999999999999999999999874
No 50
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=6.6e-13 Score=115.84 Aligned_cols=72 Identities=22% Similarity=0.390 Sum_probs=69.4
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
|.++|+|.+|++..++|++++||..||.+|+.+.|++ +++|+|+|+|++|+|..|+++|+++.-++||++.|
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~--~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~r 72 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCC--HHHHHHHhcccccccCCcccccCccchhhhhhhHH
Confidence 5689999999999999999999999999999999997 99999999999999999999999999999999876
No 51
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.24 E-value=1.1e-11 Score=101.30 Aligned_cols=70 Identities=21% Similarity=0.284 Sum_probs=65.6
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLV 178 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvv 178 (577)
++|+||+. |+.+.++++++.||.+||++|++..|++ +++|+|+|+|+.|+|..+|++|++++|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVE--PRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCC--hHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 46889987 9999999999999999999999999987 9999999999999999999999999999999863
No 52
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=5.9e-12 Score=117.18 Aligned_cols=72 Identities=22% Similarity=0.397 Sum_probs=70.2
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
|.|+|++..|+++.++|++++||..+|.+|+.+++|| +++|||+|.|+.|+|.++|+||+|+--++|||+++
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp--~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~ 72 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCC--chhhhhhhhhcccccCCccccccccccceEEEEEE
Confidence 6899999999999999999999999999999999998 99999999999999999999999999999999987
No 53
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.22 E-value=1.9e-11 Score=130.94 Aligned_cols=76 Identities=17% Similarity=0.290 Sum_probs=71.6
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCC---CCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecCC
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGK---GFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSA 182 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~g---i~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks~ 182 (577)
|+|+|||.+|++|.++|++++||.+||++|+...+ ++ +++|+|+|+|++|+|+++|++|+|+++++|+++++|++
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip--~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k 78 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYP--VAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPK 78 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCC--hhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCC
Confidence 78999999999999999999999999999999988 65 89999999999999999999999999999999988765
Q ss_pred C
Q 008120 183 K 183 (577)
Q Consensus 183 k 183 (577)
.
T Consensus 79 ~ 79 (378)
T TIGR00601 79 T 79 (378)
T ss_pred C
Confidence 4
No 54
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.21 E-value=2.6e-11 Score=101.52 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=61.7
Q ss_pred EEEE--E-eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccc-cccccceee
Q 008120 31 LIYL--S-VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVT-GGNVLHLVL 100 (577)
Q Consensus 31 ~I~V--t-l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~-dgstL~Lvl 100 (577)
+++| + ..|.+++++|++++||++||.+|++.+|+|+++|+| |+|+.|.+|+.+|++|||+ +|++++|.+
T Consensus 2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 4566 3 357899999999999999999999999999999999 9999997688999999999 789999864
No 55
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.18 E-value=5.6e-11 Score=94.38 Aligned_cols=64 Identities=22% Similarity=0.483 Sum_probs=58.9
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCccccccccccc
Q 008120 30 ILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGN 94 (577)
Q Consensus 30 M~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgs 94 (577)
|+|+|+..+..+.++|++++||++||.+|+..+|+|++.|+|+|+|+.|. |+.+|++|||++|+
T Consensus 1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~-d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLE-DDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECC-CCCCHHHcCCcCCC
Confidence 78999543478999999999999999999999999999999999999999 88999999999875
No 56
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.17 E-value=2e-11 Score=101.83 Aligned_cols=55 Identities=20% Similarity=0.344 Sum_probs=49.9
Q ss_pred eCC-CCCHHHHHHHHHHhh--CCc-cccEEEEEcCeeccCCCCcccccccccccccceee
Q 008120 45 VLE-TDSIESVKLRIQTCK--GFV-VKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVL 100 (577)
Q Consensus 45 V~~-sdTV~~LK~kI~~~~--Gip-~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvl 100 (577)
|+| ++||.+||++|+++. |++ +++|||+|+||.|. |+.+|++|||++|++|||+.
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~-D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLK-DDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCC-CCCcHHHcCCCCCCEEEEEe
Confidence 444 889999999999995 575 99999999999999 99999999999999999875
No 57
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.13 E-value=5.3e-11 Score=99.35 Aligned_cols=56 Identities=27% Similarity=0.214 Sum_probs=49.7
Q ss_pred ecc-CCchhhhHHHHHhhC--CCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 008120 122 IDR-YRNVGYLKQRIARKG--KGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLV 178 (577)
Q Consensus 122 Vd~-~~TV~~LK~kI~~~~--gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvv 178 (577)
|.+ ++||.+||++|+++. +++ ++++|||+|+|++|+|+++|++|+|+++++|||+.
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~egi~-~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLPDSLP-DPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred cCCccCcHHHHHHHHHHhhccCCC-ChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 444 599999999999995 454 48999999999999999999999999999999964
No 58
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=6.8e-11 Score=126.63 Aligned_cols=72 Identities=15% Similarity=0.423 Sum_probs=68.3
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhC---CccccEEEEEcCeeccCCCCcccccccccccccceeeee
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKG---FVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~G---ip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrL 102 (577)
|+|+| ++.|+++.|+|++++||.+||++|+...| +++++|||+|+||+|. |+.+|++|||+++++|++++.-
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~-Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILS-DDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECC-CCCcHHHcCCCCCCEEEEEecc
Confidence 89999 78999999999999999999999999998 9999999999999999 8999999999999999888654
No 59
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.13 E-value=1.6e-10 Score=99.24 Aligned_cols=76 Identities=18% Similarity=0.331 Sum_probs=71.8
Q ss_pred ccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 103 SDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
+..|.|+|++.+|+.+.++|.+++++..||++++++.|++ +++|+|+|+|+.|++..|+.+|+++++++|+++++.
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~--~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l 84 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLS--MNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQ 84 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCC--ccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEec
Confidence 4557899999999999999999999999999999999987 899999999999999999999999999999998874
No 60
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.11 E-value=1.1e-10 Score=97.54 Aligned_cols=68 Identities=19% Similarity=0.152 Sum_probs=62.5
Q ss_pred ccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEE---CCeecCCCCcccccCCCCCCEEEEE
Q 008120 107 LITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFC---DGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 107 ~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif---~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
.|.|+ .+|+++.++|++++||++||++|++..++| +++|+|+| +|+.|+|..+|++|++++++.|+|+
T Consensus 2 ~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp--~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 2 PVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVL--PERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred EEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCC--HHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 45555 578999999999999999999999999987 99999996 9999999999999999999999986
No 61
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=99.05 E-value=1.5e-12 Score=130.11 Aligned_cols=159 Identities=26% Similarity=0.280 Sum_probs=83.4
Q ss_pred CcccCCchhhhhhhhhhccCCCCCCC--CcccccCCCCCCceeEEEeccCCccCCccc------ccccCCCcceeEeeec
Q 008120 318 GTRVGEGALREVAAYVLDHPKSGPRS--LSGETMGFAGIPPTVMVRCLHEGFNHPEGY------EHALKNVKLGSLQMFM 389 (577)
Q Consensus 318 g~~~geg~~rEvAAyllD~~~~~~~~--~~~~~lgf~~VP~T~~v~~~~~~f~~~~~~------~~~~~~~k~GSlQ~fv 389 (577)
.++.++++.+++.+|.+...-...+. .-.....+..|+.|...+..+..+++.... ......++.++.|.|+
T Consensus 27 ~~l~~~~~~~~~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 106 (235)
T PF00454_consen 27 RILKKEGETREIRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHSNDNPSRKYKAKLFEKQSSKVPKDGLRQYFL 106 (235)
T ss_dssp HHHHHTT---------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTTCSC------------------TTHHHHHHH
T ss_pred HHHhcCCCCceEEEeEEEecCCCCceeEEeccccchhHhhccccccccccccccccccccccccccccccccchHHHHHH
Confidence 34456778888999999742100000 000111333344444333333333332111 1123456889999999
Q ss_pred cCCCCCCCCC-CCCcchhhhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCC----CCCCCCCccccccC
Q 008120 390 KNDGNCEDMG-PGAFPVEEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLP----ENFEDCTFDWLYWP 464 (577)
Q Consensus 390 ~~~~~~~~~~-~~~f~~~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp----~~~~~~~~~W~~wp 464 (577)
....+++++. ....-..+++.++|+||+++|.|||.+|||+.. .+|+ +++||||+||+ ..++..+|+|
T Consensus 107 ~~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~-~~g~--~~hIDfg~~f~~~~~~~~e~vPFrL---- 179 (235)
T PF00454_consen 107 KSFPSAEEWFEARKNFTRSLAAYSILDYILGLGDRHPGNILIDK-KTGE--LIHIDFGFIFGGKHLPVPETVPFRL---- 179 (235)
T ss_dssp HHSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-E-TTSE--EEE--HSSCTTHHHGSSSS--SSTT----
T ss_pred hcCCChhhhHhhhHhhHHHHHHHhhceEEEeecCCCchhheecc-ccce--eeeEEeHHhhhccccCCCCCCCeEe----
Confidence 9988876654 333347789999999999999999999999955 2455 99999999999 5677888888
Q ss_pred CCCCCCChhHHHHHHcC----ChHHHHHHHHh
Q 008120 465 QAREPYSPQTVDYIKSL----DAEQDIELLKF 492 (577)
Q Consensus 465 qa~~Pfs~~~~~~i~~L----d~~~d~~~l~~ 492 (577)
|.+.+..+ ++..+...++.
T Consensus 180 ---------T~~~~~~~~~~l~~~~~~g~f~~ 202 (235)
T PF00454_consen 180 ---------TRNMVNAMGGYLGPSGVEGLFRS 202 (235)
T ss_dssp ---------HHHHHHHTTTSSSTSHHHHHHHH
T ss_pred ---------CHHHHHHHhccCCCchhHhHHHH
Confidence 33455555 77777777775
No 62
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.04 E-value=2.7e-10 Score=90.44 Aligned_cols=64 Identities=23% Similarity=0.306 Sum_probs=59.9
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCC
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDA 172 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~s 172 (577)
|.|+||+.+ +.+.++|+++.||.+||++|+...+++ ++.|+|+|+|+.|.|..+|++|++++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~--~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIP--VEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 578999998 789999999999999999999999986 8999999999999999999999999875
No 63
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.02 E-value=2.4e-10 Score=101.84 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=61.8
Q ss_pred cccccccCCCceeE-EeeccCCchhhhHHHHHhhC-----CCCCCCCceEEEECCeecCCCCcccccC------CCCCCE
Q 008120 106 LLITVRTSCGKELE-FHIDRYRNVGYLKQRIARKG-----KGFVDVVDQEIFCDGEKLDDQRLIDDIC------KDNDAV 173 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~-i~Vd~~~TV~~LK~kI~~~~-----gi~~p~~~QrLif~Gr~LeD~~tLsdy~------I~~~sv 173 (577)
+.|.+|..+|..+. +.+++++||.+||++|++.. ++|.++++|+|||+|++|+|.+||++|+ +....|
T Consensus 5 ~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~T 84 (113)
T cd01814 5 IEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVIT 84 (113)
T ss_pred EEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceE
Confidence 34555556665444 67889999999999999444 4555689999999999999999999999 778899
Q ss_pred EEEEEecC
Q 008120 174 IHLLVQKS 181 (577)
Q Consensus 174 I~Lvvrks 181 (577)
+|+++|.+
T Consensus 85 mHvvlr~~ 92 (113)
T cd01814 85 MHVVVQPP 92 (113)
T ss_pred EEEEecCC
Confidence 99999854
No 64
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.02 E-value=3.4e-10 Score=98.32 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=60.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeee
Q 008120 39 SLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 39 ~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrL 102 (577)
...+++|++++||.+||.+|++.+++++.+|+|+|+|+.|.||..||++|||..+++|+|.++.
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 3577889999999999999999999999999999999999999999999999999999998764
No 65
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.98 E-value=8.3e-10 Score=92.48 Aligned_cols=64 Identities=17% Similarity=0.059 Sum_probs=58.6
Q ss_pred cCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecC-CCCcccccCCC-CCCEEEEEE
Q 008120 112 TSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLD-DQRLIDDICKD-NDAVIHLLV 178 (577)
Q Consensus 112 t~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~Le-D~~tLsdy~I~-~~svI~Lvv 178 (577)
...|.++.++|++++||.+||++|+.+.|++ +++|+| |+|+.|. |.++|++|+++ +|+++||.+
T Consensus 9 ~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip--~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 9 QSHTVTIWLTVRPDMTVAQLKDKVFLDYGFP--PAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred ccCCCeEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 4678999999999999999999999999997 999999 9999985 77999999998 889999864
No 66
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.97 E-value=8.9e-10 Score=113.71 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=72.6
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecCC
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSA 182 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks~ 182 (577)
|+|+|||+.|.+|++++.+++||.++|++|+...|...|.+.|+|||+|++|.|..++.+|++.++..|.+++.|++
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 68999999999999999999999999999999998445699999999999999999999999999999999998776
No 67
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.95 E-value=7.3e-10 Score=119.65 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=69.9
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecC
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKS 181 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks 181 (577)
..++|+|||.++ ++.|.|..+.||.++|+.|+..++++ +++++|||.||+|+|+.+|..|+|++|.|||||++..
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~--~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAP--PDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCC--hhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 347899999998 88999999999999999999999986 9999999999999999999999999999999988744
No 68
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.89 E-value=2.1e-09 Score=116.20 Aligned_cols=75 Identities=24% Similarity=0.364 Sum_probs=69.5
Q ss_pred CcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeec
Q 008120 28 ESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLS 103 (577)
Q Consensus 28 ~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLs 103 (577)
..++|+|+..+..+.+.|..+.||.+||++|...+++++++|+|||.||.|+ |+.+|..|||+||.||||+++..
T Consensus 14 ~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILK-D~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 14 SLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILK-DDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred ceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCcccc-ChhhHHHcCCCCCcEEEEEeccC
Confidence 5689999544449999999999999999999999999999999999999999 99999999999999999999864
No 69
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.87 E-value=2.1e-09 Score=110.97 Aligned_cols=73 Identities=23% Similarity=0.442 Sum_probs=69.2
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhC--CccccEEEEEcCeeccCCCCcccccccccccccceeeeec
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKG--FVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLS 103 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~G--ip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLs 103 (577)
|+|+| ++.|+.+++++.|++||.++|.+|+...| .|+.+|+|||+|+.|. |+.++.+|+|++++.|.+++.-.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~-D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILK-DETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceecc-CCcchhhhccccCceEEEEEecC
Confidence 78999 89999999999999999999999999999 9999999999999999 99999999999999988887654
No 70
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.86 E-value=4.6e-09 Score=84.42 Aligned_cols=64 Identities=30% Similarity=0.624 Sum_probs=60.0
Q ss_pred eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceee
Q 008120 36 VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVL 100 (577)
Q Consensus 36 l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvl 100 (577)
.+|+.+.+++.++.||.+||.+|+...|+|++.|+|+|+|+.|. |+.+|.+|++.++++|++..
T Consensus 5 ~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~-d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 5 LTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILK-DDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred cCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCC-CcCCHHHCCCCCCCEEEEEE
Confidence 46889999999999999999999999999999999999999998 99999999999999998764
No 71
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.86 E-value=5.7e-09 Score=83.88 Aligned_cols=67 Identities=27% Similarity=0.395 Sum_probs=62.6
Q ss_pred cccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 008120 110 VRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLV 178 (577)
Q Consensus 110 Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvv 178 (577)
|+..+|+.+.+.++++.||.+||++|+...+++ ++.|+|+|+|+.|+|..+|.+|++.++++|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~--~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVP--PEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 667789999999999999999999999999976 8999999999999999999999999999999864
No 72
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.84 E-value=2.7e-09 Score=95.19 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=61.8
Q ss_pred CcEEEEEEe-CC-eEEEEEeCCCCCHHHHHHHHHHhh-----CCc--cccEEEEEcCeeccCCCCcccccc------ccc
Q 008120 28 ESILIYLSV-SG-SLVPMRVLETDSIESVKLRIQTCK-----GFV--VKKQKLVFGGRELARNHSLVKDYG------VTG 92 (577)
Q Consensus 28 ~sM~I~Vtl-~G-~~~~leV~~sdTV~~LK~kI~~~~-----Gip--~~~QrLif~Gk~L~~D~~tL~dyg------I~d 92 (577)
+.+.|.+++ +| ..=+..+.+++||++||++|++.. ++| +++|+|||+||.|+ |+.||++|+ +..
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLe-D~~TL~d~~~p~g~~~~~ 81 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILE-NSKTVGECRSPVGDIAGG 81 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecC-CCCcHHHhCCcccccCCC
Confidence 445566643 55 456678899999999999999554 555 99999999999999 999999999 777
Q ss_pred ccccceeeeec
Q 008120 93 GNVLHLVLKLS 103 (577)
Q Consensus 93 gstL~LvlrLs 103 (577)
..|+||+++.+
T Consensus 82 ~~TmHvvlr~~ 92 (113)
T cd01814 82 VITMHVVVQPP 92 (113)
T ss_pred ceEEEEEecCC
Confidence 78999999875
No 73
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.81 E-value=1.6e-08 Score=86.41 Aligned_cols=70 Identities=19% Similarity=0.337 Sum_probs=60.1
Q ss_pred EEEEEEeC--CeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEE-EcCe-----eccCCCCccccccccccccccee
Q 008120 30 ILIYLSVS--GSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLV-FGGR-----ELARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 30 M~I~Vtl~--G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLi-f~Gk-----~L~~D~~tL~dygI~dgstL~Lv 99 (577)
+.|+|+.+ ......+++++.||.+||++++..+|+++..|+|. |.|+ .|.+|+.+|++||+++|.+||++
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 45666443 45566679999999999999999999999999995 8888 68779999999999999999976
No 74
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.79 E-value=1.4e-08 Score=83.49 Aligned_cols=70 Identities=21% Similarity=0.430 Sum_probs=63.9
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCcc-ccEEEEEcCeeccCCCCcccccccccccccceee
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVV-KKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVL 100 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~-~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvl 100 (577)
|+|+| ..+|+.+.+.|.+++++..|+++..+..|++. +..+|+|.|+.|. ++.|+++||+.+|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~-~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLD-PNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE--TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcC-CCCCHHHCCCCCCCEEEEEC
Confidence 78899 67889999999999999999999999999999 9999999999998 89999999999999999864
No 75
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.76 E-value=1.4e-08 Score=88.33 Aligned_cols=62 Identities=21% Similarity=0.174 Sum_probs=57.2
Q ss_pred ceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecC-CCCcccccCCCCCCEEEEEEe
Q 008120 116 KELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLD-DQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 116 k~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~Le-D~~tLsdy~I~~~svI~Lvvr 179 (577)
++..++|++++||.+||.+|+.+++++ +.+|+|+|+|+.|. |.++|++||+..+++|+|.+.
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~--P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVA--PFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCC--cccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 456788999999999999999999987 99999999999995 579999999999999999875
No 76
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.70 E-value=3e-08 Score=81.52 Aligned_cols=71 Identities=23% Similarity=0.377 Sum_probs=64.7
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCC-CceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDV-VDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLV 178 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~-~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvv 178 (577)
|+|+|++.+|+.+.+.|.+++++..|+++.+++.+++ . ++.+|+|.|+.|.++.|+.+|+++++++|++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~--~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIP--PEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTT--T-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCC--ccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 5789999999999999999999999999999999987 6 999999999999999999999999999999863
No 77
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.66 E-value=7.5e-08 Score=76.90 Aligned_cols=71 Identities=37% Similarity=0.716 Sum_probs=66.5
Q ss_pred EEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeec
Q 008120 32 IYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLS 103 (577)
Q Consensus 32 I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLs 103 (577)
+++ ++.|+++.+++.++.+|..+|.+|+...|++..+|++.+.|+.|. |+.++.+|+|..++++++..++.
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~-d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLE-DGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECc-CCCcHHHhCCCCCCEEEEEEecC
Confidence 455 688999999999999999999999999999999999999999999 88999999999999999988765
No 78
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.55 E-value=2.8e-07 Score=73.58 Aligned_cols=71 Identities=24% Similarity=0.351 Sum_probs=66.3
Q ss_pred cccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 108 ITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 108 I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
+++++..|+.+.+.+.++.+|..+|.+|+...+++ ..+|++.+.|+.|+|..++.+|+|..+++++|+.+.
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~--~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~ 72 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIP--VDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSL 72 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCC--CeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEec
Confidence 56778899999999999999999999999999987 899999999999999999999999999999998763
No 79
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.49 E-value=3.6e-07 Score=78.29 Aligned_cols=70 Identities=19% Similarity=0.404 Sum_probs=58.0
Q ss_pred EEEEEEeCC---eEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEc----C---eeccCCCCccccccccccccccee
Q 008120 30 ILIYLSVSG---SLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFG----G---RELARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 30 M~I~Vtl~G---~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~----G---k~L~~D~~tL~dygI~dgstL~Lv 99 (577)
++|+|+... .....+++++.||.+||.+|+..+|+|++.|+|.+. + ..+.+|..+|.+||+++|.+||+.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 567775433 488999999999999999999999999999999976 1 346668999999999999999875
No 80
>KOG3829 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=1.5e-06 Score=92.11 Aligned_cols=169 Identities=24% Similarity=0.331 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhcCCCcc-cccCCCCcE---EEEEcCCCCeeEEEEecC----CCCCcccCCCCCCCCCCCCCCccCCccc
Q 008120 250 DLINSTFDGLERGNKPI-RSSDGTGGT---YFMQDSTGHEYVSVFKPI----DEEPKAVNNPRGLPVSLDGEGLKRGTRV 321 (577)
Q Consensus 250 ~~~~~~~~~~~~g~~p~-~~~~Gs~gs---yf~~~~~g~~~~aVFKP~----deEp~~~~nP~~~~~~~~~~~~~~g~~~ 321 (577)
.++..+..++.. .|+ .+..+-+|| ..++=+.++ -|||||. |||-... -| .||-|
T Consensus 151 ~~~~alL~~l~~--~pI~~v~v~~~GtqLKlll~~~~~~--KavfKPmR~~Rd~~~~~~----yf------s~~dR---- 212 (486)
T KOG3829|consen 151 QSMGALLHALRT--EPITRVSVLGRGTQLKLLLRLSHQQ--KVVFKPMRYPRDEVIDGM----YY------SGFDR---- 212 (486)
T ss_pred hhHHHHHHHhhc--CcceEEeecCCceEEEEEEEecCCc--eeeeccccCCccccCCCc----cc------ccccc----
Confidence 556666666654 344 334444554 344445543 6999995 3332211 00 12322
Q ss_pred CCchhhhhhhhhhccCCCCCCCCcccccCCCCCCceeEEEec--c-----------CCccCCccc---------------
Q 008120 322 GEGALREVAAYVLDHPKSGPRSLSGETMGFAGIPPTVMVRCL--H-----------EGFNHPEGY--------------- 373 (577)
Q Consensus 322 geg~~rEvAAyllD~~~~~~~~~~~~~lgf~~VP~T~~v~~~--~-----------~~f~~~~~~--------------- 373 (577)
---||||+=|| +.|||..+|||+=+-+. - .+|+.+.+.
T Consensus 213 ---HnAEiAAFHLD-----------RiL~FrRappvVGRvvNlttEI~~~a~~~LlqtfFvsp~~N~CF~gKC~YyC~t~ 278 (486)
T KOG3829|consen 213 ---HNAEVAAFHLD-----------RVLDFRRAPPVVGRVVNLTTEIYEKAEEELLQTFFVSPAENYCFFGKCDYYCDTE 278 (486)
T ss_pred ---cchhhhhhhhh-----------hhhcccccCcccceeeeeehHHHHhhHHHHHhheeeccCcceEEeeccccccCCc
Confidence 23599999999 47999999999744322 1 134333211
Q ss_pred --ccccCCCcceeEeeeccCCCCCCC-CCCC------------Ccc--------------------hhhhhhheeeeeee
Q 008120 374 --EHALKNVKLGSLQMFMKNDGNCED-MGPG------------AFP--------------------VEEVHKISVFDIRM 418 (577)
Q Consensus 374 --~~~~~~~k~GSlQ~fv~~~~~~~~-~~~~------------~f~--------------------~~ev~ki~ilD~~i 418 (577)
-...+..+.||+|.|+++....-. ..++ .|. ..++=.++||||+|
T Consensus 279 ~avCg~pdmlEGS~~~fLP~~~~~prk~~r~Pw~RtY~~~k~a~WE~d~~YCd~VK~~~pY~~g~RLlDliD~aIfDyLi 358 (486)
T KOG3829|consen 279 EAVCGDPDMLEGSLIAFLPDESTLPRKHRRSPWRRTYKKDKKAEWEDDMNYCDKVKSIKPYDEGRRLLDLIDMAIFDYLI 358 (486)
T ss_pred ccccCCcccccceEEEEcCCcccccccccCCccccccccccccccccchHHHHHhcccCccccchhHHHHHHHHHHHHHh
Confidence 112458899999999998443210 0000 010 23577899999999
Q ss_pred ccCCCCCCceEEeeCCCCceEEeeeecCCcCCCC
Q 008120 419 ANADRHAGNILIGKGDNGQTVLIPIDHGYCLPEN 452 (577)
Q Consensus 419 ~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~ 452 (577)
.|+|||.=--.-.. ++.-.++-+|||-+|-..
T Consensus 359 GN~DRHHYEtF~~f--~d~s~~ihLDngr~FGrp 390 (486)
T KOG3829|consen 359 GNMDRHHYETFEVF--GDLSFLIHLDNGRAFGRP 390 (486)
T ss_pred cccchhhhhhhhcc--CCcceEEEeccccccCCC
Confidence 99999975333222 233569999999999743
No 81
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.35 E-value=1.1e-06 Score=78.48 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=62.5
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCccccccc-------ccccccceeeee
Q 008120 30 ILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGV-------TGGNVLHLVLKL 102 (577)
Q Consensus 30 M~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI-------~dgstL~LvlrL 102 (577)
|-+.|+....++.+++.++.||.+||.+|+.....|+++|+|+-.+..|+ |++||+|||+ +...+|-|.+|-
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLe-D~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLD-DGKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeec-ccccHHHcCccccccccCCCCeEEEEEec
Confidence 44555666788999999999999999999999999999999997778888 9999999999 557777777664
Q ss_pred c
Q 008120 103 S 103 (577)
Q Consensus 103 s 103 (577)
.
T Consensus 82 ~ 82 (119)
T cd01788 82 S 82 (119)
T ss_pred C
Confidence 3
No 82
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.30 E-value=1.5e-06 Score=71.83 Aligned_cols=72 Identities=22% Similarity=0.295 Sum_probs=61.6
Q ss_pred EEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEc----CeeccCCCCcccccccccccccceeeee
Q 008120 30 ILIYLS-VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFG----GRELARNHSLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 30 M~I~Vt-l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~----Gk~L~~D~~tL~dygI~dgstL~LvlrL 102 (577)
+||+|+ .++..+++.|+|..+|..+|++|....|++ ..|||.|+ -++|.++..+|++|||..+..|.|+-+.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~-g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~ 77 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCS-GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETF 77 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCcc-cceEEEeecCCcccccccccccHhhhcceeccEEEEEecC
Confidence 578884 566889999999999999999999999998 59999996 2566669999999999998888776554
No 83
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.29 E-value=3.7e-06 Score=75.77 Aligned_cols=76 Identities=26% Similarity=0.308 Sum_probs=55.9
Q ss_pred ccccccCCCc-eeEEeeccCCchhhhHHHHHhhCC-----CCCCCCceEEEECCeecCCCCcccccCCCCCC------EE
Q 008120 107 LITVRTSCGK-ELEFHIDRYRNVGYLKQRIARKGK-----GFVDVVDQEIFCDGEKLDDQRLIDDICKDNDA------VI 174 (577)
Q Consensus 107 ~I~Vrt~~Gk-~~~i~Vd~~~TV~~LK~kI~~~~g-----i~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~s------vI 174 (577)
.|.++..+|+ .-.+..+++.||.+||++|..... .+..+++.||+|.||.|+|..+|.++.+..+. ++
T Consensus 4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm 83 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM 83 (111)
T ss_dssp EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence 3444556788 777999999999999999987641 23357899999999999999999999876555 78
Q ss_pred EEEEecCC
Q 008120 175 HLLVQKSA 182 (577)
Q Consensus 175 ~Lvvrks~ 182 (577)
||++|.+.
T Consensus 84 Hlvvrp~~ 91 (111)
T PF13881_consen 84 HLVVRPNA 91 (111)
T ss_dssp EEEE-SSS
T ss_pred EEEecCCC
Confidence 99998554
No 84
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.24 E-value=2.9e-06 Score=72.53 Aligned_cols=62 Identities=23% Similarity=0.267 Sum_probs=53.8
Q ss_pred CceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEE-ECCe-----ec-CCCCcccccCCCCCCEEEEEE
Q 008120 115 GKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIF-CDGE-----KL-DDQRLIDDICKDNDAVIHLLV 178 (577)
Q Consensus 115 Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLi-f~Gr-----~L-eD~~tLsdy~I~~~svI~Lvv 178 (577)
.......++++.||.+||++|...+|++ ++.|+|. |.|+ .| +|..+|++|++++|+.||++=
T Consensus 12 ~~~~ekr~~~~~Tv~~lK~kl~~~~G~~--~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 12 SFSFEKKYSRGLTIAELKKKLELVVGTP--ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred ceeeeEecCCCCcHHHHHHHHHHHHCCC--ccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 3445566999999999999999999987 8999995 8887 56 778999999999999999864
No 85
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.1e-06 Score=101.70 Aligned_cols=70 Identities=24% Similarity=0.412 Sum_probs=66.9
Q ss_pred EEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeee
Q 008120 31 LIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 31 ~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrL 102 (577)
.|.| |++.++.++.|...+||.+||..|.++.+|+.++|||||+||+|. |++++++||| +|.||||+-|.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~-~~k~vq~~~v-dgk~~hlverp 74 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQ-DDKKVQEYNV-DGKVIHLVERP 74 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeec-cchhhhhccC-CCeEEEeeccC
Confidence 3788 799999999999999999999999999999999999999999999 9999999999 99999999885
No 86
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.7e-06 Score=100.33 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=67.5
Q ss_pred ccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 107 LITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 107 ~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
.|+|||++.++.+|.|...+||.++|..|..+.+|+ .+.|||||+||+|.|.+++.+|+| +|-+|||+-|
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~--s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlver 73 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIP--SEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVER 73 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccc--cccceeeecceeeccchhhhhccC-CCeEEEeecc
Confidence 489999999999999999999999999999999998 999999999999999999999999 9999999866
No 87
>PLN02560 enoyl-CoA reductase
Probab=98.17 E-value=2.9e-06 Score=89.16 Aligned_cols=67 Identities=24% Similarity=0.389 Sum_probs=58.2
Q ss_pred EEEEE-EeCCeEE---EEEeCCCCCHHHHHHHHHHhhCC-ccccEEEEEc---C----eeccCCCCcccccccccccccc
Q 008120 30 ILIYL-SVSGSLV---PMRVLETDSIESVKLRIQTCKGF-VVKKQKLVFG---G----RELARNHSLVKDYGVTGGNVLH 97 (577)
Q Consensus 30 M~I~V-tl~G~~~---~leV~~sdTV~~LK~kI~~~~Gi-p~~~QrLif~---G----k~L~~D~~tL~dygI~dgstL~ 97 (577)
|+|+| ..+|+.+ +++++++.||++||.+|+++.++ ++++|||.+. | +.|. |+.+|++||+++|++|+
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~-d~ktL~d~gv~~gstLy 79 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLD-DSKSLKDYGLGDGGTVV 79 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccC-CCCCHHhcCCCCCceEE
Confidence 78888 4567776 79999999999999999999986 8999999983 4 3777 88999999999999865
No 88
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.14 E-value=5.3e-06 Score=74.13 Aligned_cols=72 Identities=21% Similarity=0.148 Sum_probs=60.1
Q ss_pred cccccCCCc-eeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCC-------CCCCEEEEEEe
Q 008120 108 ITVRTSCGK-ELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICK-------DNDAVIHLLVQ 179 (577)
Q Consensus 108 I~Vrt~~Gk-~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I-------~~~svI~Lvvr 179 (577)
+|++....| ++-+++.++.||.+||++|+.-...+ +++|+|+-.+..|+|.+||+|||+ ++.+++-|.+|
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~p--p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRP--PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCC--hhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 444433333 45578999999999999999999876 999999987889999999999999 77999999888
Q ss_pred cC
Q 008120 180 KS 181 (577)
Q Consensus 180 ks 181 (577)
+.
T Consensus 81 ~~ 82 (119)
T cd01788 81 SS 82 (119)
T ss_pred cC
Confidence 53
No 89
>PLN02560 enoyl-CoA reductase
Probab=98.11 E-value=4.5e-06 Score=87.73 Aligned_cols=70 Identities=20% Similarity=0.316 Sum_probs=61.0
Q ss_pred cccccccCCCcee---EEeeccCCchhhhHHHHHhhCCCCCCCCceEEEEC-------CeecCCCCcccccCCCCCCEEE
Q 008120 106 LLITVRTSCGKEL---EFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCD-------GEKLDDQRLIDDICKDNDAVIH 175 (577)
Q Consensus 106 m~I~Vrt~~Gk~~---~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~-------Gr~LeD~~tLsdy~I~~~svI~ 175 (577)
|.|+|++.+|+.+ +++++++.||++||++|+++.+.. ++++|||++. |+.|+|+.+|+|++++++++|+
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~-~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy 79 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKY-YPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVV 79 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCC-ChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEE
Confidence 5688888888887 799999999999999999998753 3899999983 3488999999999999999988
Q ss_pred E
Q 008120 176 L 176 (577)
Q Consensus 176 L 176 (577)
+
T Consensus 80 ~ 80 (308)
T PLN02560 80 F 80 (308)
T ss_pred E
Confidence 5
No 90
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.10 E-value=1.4e-05 Score=72.05 Aligned_cols=74 Identities=23% Similarity=0.390 Sum_probs=54.9
Q ss_pred cEEEEE-EeCCe-EEEEEeCCCCCHHHHHHHHHHhh-------CCccccEEEEEcCeeccCCCCccccccccccc-----
Q 008120 29 SILIYL-SVSGS-LVPMRVLETDSIESVKLRIQTCK-------GFVVKKQKLVFGGRELARNHSLVKDYGVTGGN----- 94 (577)
Q Consensus 29 sM~I~V-tl~G~-~~~leV~~sdTV~~LK~kI~~~~-------Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgs----- 94 (577)
.+.|.+ -.+|. +.++..++++||++||++|.... -..++..||||.||.|. |+.+|+++++..|.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~-d~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILE-DNKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE--SSSBTGGGT--TTSETT--
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecC-CcCcHHHhCCCCCCCCCCC
Confidence 455666 35887 89999999999999999998653 23567799999999999 99999999988765
Q ss_pred -ccceeeeec
Q 008120 95 -VLHLVLKLS 103 (577)
Q Consensus 95 -tL~LvlrLs 103 (577)
++||+++..
T Consensus 81 ~vmHlvvrp~ 90 (111)
T PF13881_consen 81 TVMHLVVRPN 90 (111)
T ss_dssp EEEEEEE-SS
T ss_pred EEEEEEecCC
Confidence 677777653
No 91
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=97.90 E-value=1.9e-05 Score=67.73 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=51.4
Q ss_pred ceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEEC----C---eec-CCCCcccccCCCCCCEEEEEE
Q 008120 116 KELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCD----G---EKL-DDQRLIDDICKDNDAVIHLLV 178 (577)
Q Consensus 116 k~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~----G---r~L-eD~~tLsdy~I~~~svI~Lvv 178 (577)
+.....++++.||.+||++|+..+|++ ++.|+|.+. + ..| +|..+|.+|++++|.+||+.=
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~Gi~--~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTGIP--PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHTS---TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCC--cccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 577899999999999999999999997 999999985 1 234 668999999999999999853
No 92
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.90 E-value=1.9e-05 Score=67.09 Aligned_cols=72 Identities=17% Similarity=0.267 Sum_probs=45.1
Q ss_pred CcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEc---Ceec-cCCCCccccccccccccccee
Q 008120 28 ESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFG---GREL-ARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 28 ~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~---Gk~L-~~D~~tL~dygI~dgstL~Lv 99 (577)
++|-|.|.-....+.+++++++|+.+||++|++..+++...|.|+.+ ...| .+++.+|+++||+.|+.|.|.
T Consensus 3 ~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 57889995555688899999999999999999999999999999754 2345 347899999999999988763
No 93
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.80 E-value=6.2e-05 Score=56.58 Aligned_cols=63 Identities=25% Similarity=0.447 Sum_probs=57.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceee
Q 008120 37 SGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVL 100 (577)
Q Consensus 37 ~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvl 100 (577)
+|....+.+.++.|+.+||.+|..+.|+++..|.|+++|..+. +...+.+|++.+++++++..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILP-DSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEe
Confidence 5788889999999999999999999999999999999999998 77777899999999998753
No 94
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.74 E-value=9.9e-05 Score=55.44 Aligned_cols=64 Identities=22% Similarity=0.264 Sum_probs=58.1
Q ss_pred CCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 008120 113 SCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLV 178 (577)
Q Consensus 113 ~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvv 178 (577)
.+|....+.+.+..|+.+||++|..+.+.+ ++.|.|+++|..+.+...+.++++.++++|++..
T Consensus 5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 5 NDGKTVELLVPSGTTVADLKEKLAKKLGLP--PEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHHHHCcC--hHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 368888899999999999999999999865 8999999999999999888899999999999853
No 95
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=97.74 E-value=5e-05 Score=63.66 Aligned_cols=52 Identities=25% Similarity=0.346 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHHHHHhhC-CccccEEEE--EcCeeccCCCCcccccccccccccce
Q 008120 46 LETDSIESVKLRIQTCKG-FVVKKQKLV--FGGRELARNHSLVKDYGVTGGNVLHL 98 (577)
Q Consensus 46 ~~sdTV~~LK~kI~~~~G-ip~~~QrLi--f~Gk~L~~D~~tL~dygI~dgstL~L 98 (577)
.++.||.+||..|+...+ ++++.|+|. +.|+.|. |+.+|.+|||.+|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~-d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLK-DDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccC-CcccHhhcCCCCCCEEEE
Confidence 488999999999998875 578999996 7899998 888999999999998764
No 96
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=97.74 E-value=6.3e-05 Score=63.06 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=46.5
Q ss_pred ccCCchhhhHHHHHhhCCCCCCCCceEEE--ECCeecCCCCcccccCCCCCCEEEE
Q 008120 123 DRYRNVGYLKQRIARKGKGFVDVVDQEIF--CDGEKLDDQRLIDDICKDNDAVIHL 176 (577)
Q Consensus 123 d~~~TV~~LK~kI~~~~gi~~p~~~QrLi--f~Gr~LeD~~tLsdy~I~~~svI~L 176 (577)
+++.||.+||+.|++..+.. ++++|+|. +.|+.|.|..+|.+||+.++++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~-~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQL-TVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCC-CcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 47899999999999987642 48999986 7999999999999999999999885
No 97
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.35 E-value=0.00018 Score=61.20 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=41.9
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEEC---Ceec--CCCCcccccCCCCCCEEEE
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCD---GEKL--DDQRLIDDICKDNDAVIHL 176 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~---Gr~L--eD~~tLsdy~I~~~svI~L 176 (577)
+.|-|-||+.+|- +.+++++++|+.+||++|++..+++ .+.|.|+.+ ...| .+..+|+++|+++|+.|+|
T Consensus 3 ~~milRvrS~dG~-~Rie~~~~~t~~~L~~kI~~~l~~~--~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 3 SSMILRVRSKDGM-KRIEVSPSSTLSDLKEKISEQLSIP--DSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp ---EEEEE-SSEE-EEEEE-TTSBHHHHHHHHHHHS-----TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred ccEEEEEECCCCC-EEEEcCCcccHHHHHHHHHHHcCCC--CcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 4456667776654 4689999999999999999999986 678887642 2345 5689999999999999987
No 98
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00027 Score=73.06 Aligned_cols=68 Identities=12% Similarity=0.228 Sum_probs=61.0
Q ss_pred CCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 008120 114 CGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSAK 183 (577)
Q Consensus 114 ~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks~k 183 (577)
....+.++|+.+.+|.+||+-+++..|++ +++.+++|.|++|.|..++..+.+...+++|+++-|++.
T Consensus 12 ~~h~l~v~v~~~t~I~~lke~Vak~~gvp--~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP~~ 79 (446)
T KOG0006|consen 12 SSHGLPVEVDSDTSIFQLKEVVAKRQGVP--ADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRPWR 79 (446)
T ss_pred ccCceeEEEecCCCHHHHHHHHHHhhCCC--hhheEEEEeccccccCceeecccccccchhhhhccCccc
Confidence 34568899999999999999999999987 999999999999999999999999899999998666653
No 99
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.26 E-value=0.00068 Score=56.42 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=60.3
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEEC---C--eecCCCCcccccCCCCCCEEEEEE
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCD---G--EKLDDQRLIDDICKDNDAVIHLLV 178 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~---G--r~LeD~~tLsdy~I~~~svI~Lvv 178 (577)
++|+|+...+..+.+.|+|..+|..+|++|....+.. ..|||.|+ | +.|.+..+|++|||-.+..|.|+-
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~---g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCS---GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCcc---cceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence 3678888888999999999999999999999999974 69999993 3 356899999999998888887753
No 100
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0006 Score=70.63 Aligned_cols=69 Identities=20% Similarity=0.438 Sum_probs=60.0
Q ss_pred EEEEEEeC--C--eEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCccccccccccccccee
Q 008120 30 ILIYLSVS--G--SLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 30 M~I~Vtl~--G--~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lv 99 (577)
|.+.|.++ | ..++++|+.+.+|.+||+-++...|+|+++.+++|.||+|. |+.+++.+.+..-+.+|++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs-~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELS-NDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccc-cCceeecccccccchhhhh
Confidence 45666433 2 45888999999999999999999999999999999999999 9999998888888888876
No 101
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0016 Score=70.92 Aligned_cols=71 Identities=11% Similarity=0.155 Sum_probs=65.5
Q ss_pred EEEEEeCCeEEEEE-eCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeee
Q 008120 31 LIYLSVSGSLVPMR-VLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 31 ~I~Vtl~G~~~~le-V~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrL 102 (577)
.|.|+..|+.+.++ ++.++|+..+|+++...+|++|+.|++.+.|..+. |+..+...+|++|.+|+|+-..
T Consensus 5 ~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~-dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 5 TVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAK-DDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred eEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEeccccc-ccccccccccCCCCEEEeeccc
Confidence 46678899999998 99999999999999999999999999999999999 8888889999999999988654
No 102
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=96.82 E-value=0.0018 Score=56.40 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=52.3
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEE-cC-eeccCCCCccccccccc
Q 008120 30 ILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVF-GG-RELARNHSLVKDYGVTG 92 (577)
Q Consensus 30 M~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif-~G-k~L~~D~~tL~dygI~d 92 (577)
|-+.|+....++.++..++.||-+||.+++....-|++.|+|+. .. +.|. |..+|+|+|...
T Consensus 3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~-D~ktL~d~gfts 66 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLD-DGKTLGDCGFTS 66 (110)
T ss_pred eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhh-ccchhhhccccc
Confidence 45556666678999999999999999999999999999999998 44 4555 999999998754
No 103
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.00065 Score=54.96 Aligned_cols=68 Identities=24% Similarity=0.212 Sum_probs=57.4
Q ss_pred EEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCccccccccccccccee
Q 008120 31 LIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 31 ~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lv 99 (577)
++.+ ..-|+...+..++++||+++|..|+.++|..+++..|---+-.+. |+-+|++|.|++|..+.|.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~k-d~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFK-DHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhh-cccceeeEEeccCccEEEe
Confidence 3444 355889999999999999999999999999988877765666777 9999999999999877653
No 104
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0017 Score=52.63 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=58.3
Q ss_pred ccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 107 LITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 107 ~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
.+.++..-|++..+.+.+.+||+++|+.|+...|-. ++...|---+-.++|+-+|+||.+++|..+.|.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~--~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR--PEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCC--hhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 455666679999999999999999999999999965 666666656678899999999999999888763
No 105
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=96.20 E-value=0.0018 Score=54.44 Aligned_cols=39 Identities=31% Similarity=0.382 Sum_probs=29.3
Q ss_pred chhhhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeee
Q 008120 404 PVEEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPI 443 (577)
Q Consensus 404 ~~~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~I 443 (577)
.+.++-+..+|+++|+|+|||.+||=+-.+ ++.++|.|+
T Consensus 39 ~~~~l~~~~~fn~ligN~D~H~kN~s~l~~-~~~~~LaP~ 77 (79)
T PF07804_consen 39 DVRELFRRLVFNYLIGNTDRHLKNFSFLYD-GGGWRLAPA 77 (79)
T ss_dssp HHHHHHHHHHHHHHCTBS---CCCSEEEEE-CCEEEE--B
T ss_pred HHHHHHHHHHHHHHHcCCcCCcCCEEEEEc-CCeEEecCC
Confidence 367889999999999999999999988775 577899886
No 106
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=95.94 E-value=0.0045 Score=62.00 Aligned_cols=43 Identities=23% Similarity=0.436 Sum_probs=34.4
Q ss_pred hhhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCC
Q 008120 406 EEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLP 450 (577)
Q Consensus 406 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp 450 (577)
.++-.++|||++|+|+|||.-|..=+... ..-++-+|||-.|-
T Consensus 90 ldliDm~IFDFLigN~DRhhye~f~~fgn--~~~l~~LDNgrgFG 132 (221)
T PF06702_consen 90 LDLIDMAIFDFLIGNMDRHHYETFNKFGN--EGFLLHLDNGRGFG 132 (221)
T ss_pred hHHHHHHHHHHHhcCCcchhhhhhhccCC--CceEEEEeCCcccC
Confidence 35778999999999999999997643322 23489999999995
No 107
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.039 Score=48.60 Aligned_cols=77 Identities=14% Similarity=0.295 Sum_probs=67.4
Q ss_pred CcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 28 ESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 28 ~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
.-+++.| ..++.+..+.|..+.+...|+..-.+..|++.+..|++|+|+.+. ..+|-++.+..+|+.|.++....++
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~-~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIR-ETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcC-CCCChhhhCCcCCcEEEEEeecccC
Confidence 3455555 356788899999999999999999999999999999999999998 9999999999999999988766554
No 108
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=95.80 E-value=0.056 Score=57.23 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=79.1
Q ss_pred hhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCCCChhHHHHHHcCChHHHH
Q 008120 408 VHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDAEQDI 487 (577)
Q Consensus 408 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~Pfs~~~~~~i~~Ld~~~d~ 487 (577)
+---+|.=|++.=.|||.||||+.. +|+ ++.||=|++|-.... .++.+..+-.-++++.++-+-.......-
T Consensus 152 ~Agysv~tYiLgigDRHn~NILid~--~G~--l~HIDFG~il~~~p~----~~~~~E~~PFkLT~emv~~mGg~~~s~~f 223 (311)
T cd05167 152 MAAYSLISYLLQIKDRHNGNIMIDD--DGH--IIHIDFGFIFEISPG----GNLKFESAPFKLTKEMVQIMGGSMEATPF 223 (311)
T ss_pred HHHHHHHHHHhhccccCccceEEcC--CCC--EEEEeeHHhhccCCC----CCCCcCCCCEeecHHHHHHhCCCCcchhH
Confidence 4455677788888899999999987 677 999999999964311 11111222333566666655444322222
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCChHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 008120 488 ELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLETVSKI 567 (577)
Q Consensus 488 ~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~~~~ 567 (577)
+.+++ +..++..+||-..-+ ..-+..||.-..+..-+ +..+..-++.+.++.||+.-.+.+..+
T Consensus 224 ~~F~~----~~~~~~~~lR~~~~~----------il~l~~lm~~s~lp~~~--~~~i~~l~~rf~l~~se~~a~~~~~~l 287 (311)
T cd05167 224 KWFVE----LCVRAFLAVRPYMDE----------IVSLVELMLDSGLPCFR--GDTIKNLRQRFAPEKSEREAAEFMLSL 287 (311)
T ss_pred HHHHH----HHHHHHHHHHcCHHH----------HHHHHHHHHcCCchhhh--HHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 23322 111222223322211 11222233322211111 344555566688889999888888888
Q ss_pred HHHHHhh
Q 008120 568 TDYRLDK 574 (577)
Q Consensus 568 ~~~~~~~ 574 (577)
++.-++.
T Consensus 288 I~~s~~~ 294 (311)
T cd05167 288 IAESYEK 294 (311)
T ss_pred HHHHHhc
Confidence 8776664
No 109
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=95.65 E-value=0.11 Score=54.69 Aligned_cols=143 Identities=20% Similarity=0.299 Sum_probs=78.2
Q ss_pred hhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCCCChhHHHHHHcCChHHHH
Q 008120 408 VHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDAEQDI 487 (577)
Q Consensus 408 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~Pfs~~~~~~i~~Ld~~~d~ 487 (577)
+--.+|.=|++.=-|||.+|||+.. +|+ ++.||=|++|-.......| ..+---++++.++-+-....+. -
T Consensus 133 ~A~ySvv~YvLGigDRH~~NILi~~--~G~--liHIDFG~~fg~~~~~~~~-----E~vPFrLT~~mv~~mGg~~s~~-~ 202 (293)
T cd05168 133 LAGYSLICYLLQIKDRHNGNILIDN--DGH--IIHIDFGFMLSNSPGNVGF-----ETAPFKLTQEYIEVMGGVNSDL-F 202 (293)
T ss_pred HHHHHHHHHHhhccccCCCceEEcC--CCC--EEEEehHHhhcccccCCCC-----CCCCEEecHHHHHHhCCCCCch-h
Confidence 4556778888888999999999987 577 9999999999754322221 1122223555555444333221 1
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhccccc-CCCCCChHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 008120 488 ELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRE-TVNKESVIEEIVREAQDSLLPGISEAAFLETVSK 566 (577)
Q Consensus 488 ~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~-~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~~~ 566 (577)
..++. +-.+.+.+||-..-.+ .-+-.+|.-. .+..-+.-+..+...++.+.++.+|..--+.+-.
T Consensus 203 ~~F~~----~c~~~~~~LR~~~~~i----------l~ll~~m~~~~~lp~f~~~~~~i~~l~~r~~l~~se~~a~~~~~~ 268 (293)
T cd05168 203 NYFKK----LFLKGFMALRKHVDRI----------ILLVEIMQSDSKLPCFKAGEFTIQQLRDRFMLNLTEEQLEVFVDE 268 (293)
T ss_pred HHHHH----HHHHHHHHHHhchHHH----------HHHHHHHccCCCCccccCchHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 22221 1122333333332222 2222233222 1111110234455556667788888887777777
Q ss_pred HHHHHHhh
Q 008120 567 ITDYRLDK 574 (577)
Q Consensus 567 ~~~~~~~~ 574 (577)
+++..++.
T Consensus 269 lI~~s~~~ 276 (293)
T cd05168 269 LINQSLDN 276 (293)
T ss_pred HHHHHHhc
Confidence 77776654
No 110
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=95.47 E-value=0.16 Score=54.67 Aligned_cols=144 Identities=19% Similarity=0.173 Sum_probs=78.6
Q ss_pred hhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCCCChhHHHHHHcCCh-HHH
Q 008120 408 VHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDA-EQD 486 (577)
Q Consensus 408 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~Pfs~~~~~~i~~Ld~-~~d 486 (577)
.---+|.=|++.=.|||.||||+.. +|+ ++.||=|+.|-.. .+|+++.+..+--+|++|.++-+..-+. ...
T Consensus 195 ~AgYsV~tYiLgIgDRHndNImi~~--~Gh--lfHIDFG~iLg~~---~~~g~~~re~~PF~Lt~emv~vm~gg~~~S~~ 267 (354)
T cd00895 195 CAGCCVATYVLGICDRHNDNIMLKT--TGH--MFHIDFGRFLGHA---QMFGNIKRDRAPFVFTSDMAYVINGGDKPSSR 267 (354)
T ss_pred HHHHHHHHHHccccccCCCceeEcC--CCC--EEEEeeHHhcCCC---cccCCCCcCCCCccccHHHHHHhcCCCCCChh
Confidence 4456778888999999999999986 677 9999999999864 3444443433444457777655532111 112
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCChHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 008120 487 IELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLETVSK 566 (577)
Q Consensus 487 ~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~~~ 566 (577)
.+.+++. --+....||-..-+ .--+..||.-..+..-+. ++-+...++.+.++.||+.=.+.+.+
T Consensus 268 f~~F~~l----c~~ay~~lRk~~~~----------il~L~~lM~~sgiP~l~~-~~~i~~l~~rf~l~~se~eA~~~f~~ 332 (354)
T cd00895 268 FHDFVDL----CCQAYNLIRKHTHL----------FLNLLGLMLSCGIPELSD-LEDLKYVYDALRPQDTEADATTYFTR 332 (354)
T ss_pred HHHHHHH----HHHHHHHHHHhHHH----------HHHHHHHHHcCCCcccCc-chHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 2222221 01112222222211 122233333221111111 22345556677888888866666666
Q ss_pred HHHHHHh
Q 008120 567 ITDYRLD 573 (577)
Q Consensus 567 ~~~~~~~ 573 (577)
+++.-++
T Consensus 333 lI~~s~~ 339 (354)
T cd00895 333 LIESSLG 339 (354)
T ss_pred HHHHHHh
Confidence 6665554
No 111
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.30 E-value=0.18 Score=57.35 Aligned_cols=142 Identities=22% Similarity=0.305 Sum_probs=94.0
Q ss_pred hhhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCCCChhHHHHHHcCChHH
Q 008120 406 EEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDAEQ 485 (577)
Q Consensus 406 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~Pfs~~~~~~i~~Ld~~~ 485 (577)
...---+|.=|+|+=.|||.||+|+++ ||+ +..||-||.|--..+..+ ...-++.+.++++-.-....
T Consensus 684 kScaGYsVitYILGvGDRhldNLllT~--dGk--~FHiDFgyIlGRDPKP~p--------p~MkL~kemve~mgg~es~~ 751 (843)
T KOG0906|consen 684 KSCAGYSVITYILGVGDRHLDNLLLTK--DGK--LFHIDFGYILGRDPKPFP--------PPMKLAKEMVEGMGGAESKQ 751 (843)
T ss_pred HhhccceeeeeeecccCCCcCceEEcc--CCc--EEEEeeeeeccCCCCCCC--------CccccCHHHHHHhcccchHH
Confidence 345556799999999999999999999 777 999999999976544333 23445677777776555544
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccC-CCCCChHHHHHHHHHhhcCCCCChHHHHHHH
Q 008120 486 DIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRET-VNKESVIEEIVREAQDSLLPGISEAAFLETV 564 (577)
Q Consensus 486 d~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~~-~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~ 564 (577)
..+....+ -+....||.+..++ |.++ ++|.-.+ .|...+.+++|-++++-.--.+||++=.+.+
T Consensus 752 Yq~F~s~c-----~~Af~~LRRssnlI-------lnLf---~LM~~~~IPDia~dp~k~I~kvqeRfrLdmSde~A~~~f 816 (843)
T KOG0906|consen 752 YQEFRSYC-----YEAFLILRRSSNLI-------LNLF---SLMADANIPDIAFDPNKAILKVQERFRLDMSDEAATKHF 816 (843)
T ss_pred HHHHHHHH-----HHHHHHHHHhccHH-------HHHH---HHHhcCCCCceeeCcchhhHHHHHHHcccccHHHHHHHH
Confidence 44444432 22333344333322 2233 3444433 3456788999999999888889998777776
Q ss_pred HHHHHHHHhh
Q 008120 565 SKITDYRLDK 574 (577)
Q Consensus 565 ~~~~~~~~~~ 574 (577)
-..++.-+..
T Consensus 817 q~lI~~SV~A 826 (843)
T KOG0906|consen 817 QKLINESVNA 826 (843)
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 112
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=95.28 E-value=0.17 Score=53.18 Aligned_cols=141 Identities=21% Similarity=0.318 Sum_probs=78.6
Q ss_pred hhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCC-CCccccccCCCCCCCChhHHHHHHcCChHHH
Q 008120 408 VHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFED-CTFDWLYWPQAREPYSPQTVDYIKSLDAEQD 486 (577)
Q Consensus 408 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~-~~~~W~~wpqa~~Pfs~~~~~~i~~Ld~~~d 486 (577)
+--.+|.=|++.=-|||.||||+.. +|+ ++.||-|++|-..... ..| ..+---++++.++-+-....+.
T Consensus 131 lA~ySvv~YiLgigDRH~~NILid~--~G~--liHIDFG~ilg~~p~~~~~~-----E~~PFrLT~emv~~mGg~~s~~- 200 (289)
T cd00893 131 MAGYSLLCYLLQIKDRHNGNILLDS--DGH--IIHIDFGFILDSSPGNNLGF-----EPAAFKFTKEMVDFMGGKKSDD- 200 (289)
T ss_pred HHHHHHHHHHhhccccCCCceEECC--CCC--EEEEehHHhhCcCCcCCCCC-----CCCCeeecHHHHHHhCCCCChh-
Confidence 4556778888888999999999986 677 9999999999764221 111 1122234666665554433221
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCChHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 008120 487 IELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLETVSK 566 (577)
Q Consensus 487 ~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~~~ 566 (577)
...+++ +-.+.+.+||-..-. ..-+-.+|.-..+..-+ +..+..-++.+.++.||+...+.+-.
T Consensus 201 f~~F~~----~c~~~~~~lR~~~~~----------il~ll~~m~~~~lp~~~--~~~i~~l~~r~~l~~s~~~a~~~~~~ 264 (289)
T cd00893 201 FKKFRY----LCLRGFIAVRKHMDL----------VISLVYLLIFSGLPCFR--GSTIKKLKERLCLNMSEKEAINTVMK 264 (289)
T ss_pred HHHHHH----HHHHHHHHHhhCHHH----------HHHHHHHHccCCCcccC--HHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 122222 112222333322111 12222233322222112 34456666777888899888888877
Q ss_pred HHHHHHhh
Q 008120 567 ITDYRLDK 574 (577)
Q Consensus 567 ~~~~~~~~ 574 (577)
+++.-++.
T Consensus 265 lI~~s~~~ 272 (289)
T cd00893 265 KIDSSYNS 272 (289)
T ss_pred HHHHHHhh
Confidence 77776654
No 113
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=95.15 E-value=0.029 Score=49.47 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=39.9
Q ss_pred ceeEEeec--cCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCccccc
Q 008120 116 KELEFHID--RYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDI 166 (577)
Q Consensus 116 k~~~i~Vd--~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy 166 (577)
..+.+++. .+.||..||++|.+.......-..+||+|+|+.|.|...++..
T Consensus 12 pDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 12 PDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred CCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 34666666 7899999999999998422235788999999999998777653
No 114
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=95.13 E-value=0.021 Score=49.81 Aligned_cols=51 Identities=22% Similarity=0.175 Sum_probs=43.9
Q ss_pred ceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEE-CC-eecCCCCcccccCC
Q 008120 116 KELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFC-DG-EKLDDQRLIDDICK 168 (577)
Q Consensus 116 k~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif-~G-r~LeD~~tLsdy~I 168 (577)
.++.++.+++.||.+||+++..-..-| ++.|+|+. .. +.|+|..+|+|+|.
T Consensus 12 ttif~da~es~tV~elK~~l~gi~~~P--vn~qrL~kmd~eqlL~D~ktL~d~gf 64 (110)
T KOG4495|consen 12 TTIFTDAKESSTVFELKRKLEGILKRP--VNEQRLYKMDTEQLLDDGKTLGDCGF 64 (110)
T ss_pred eeEEeecCccccHHHHHHHHHHHHhCC--CcchheeecCHHHHhhccchhhhccc
Confidence 456688999999999999999988866 99999997 44 67899999999974
No 115
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=0.026 Score=55.89 Aligned_cols=67 Identities=13% Similarity=0.250 Sum_probs=59.0
Q ss_pred cEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCccccccccccccc
Q 008120 29 SILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVL 96 (577)
Q Consensus 29 sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL 96 (577)
..+..++..++.+.+.+...+|+.++|.++....|+.+-.|+++|+|+.|. |...|..++|..|..-
T Consensus 147 ~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~-dkt~LeEc~iekg~rY 213 (231)
T KOG0013|consen 147 ILKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLV-DKTDLEECKIEKGQRY 213 (231)
T ss_pred chHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCcee-ccccceeeeecCCCEE
Confidence 344455556788999999999999999999999999999999999999999 9999999999999543
No 116
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=95.02 E-value=0.04 Score=46.38 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=47.6
Q ss_pred EEEEEEeC-CeEEEEEeCCCCCHHHHHHHHHHhhCCcccc------EEEE-EcCeeccCCCCcccccccccccccce
Q 008120 30 ILIYLSVS-GSLVPMRVLETDSIESVKLRIQTCKGFVVKK------QKLV-FGGRELARNHSLVKDYGVTGGNVLHL 98 (577)
Q Consensus 30 M~I~Vtl~-G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~------QrLi-f~Gk~L~~D~~tL~dygI~dgstL~L 98 (577)
++|+|... |+.+.+.+..+.+|++|...|.+..+.+... -+|. -+|.+|. ++.+|++|||.+|++|.|
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~-~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLD-PDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEE-TTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccC-CcCcHhHcCCCCCCEEEe
Confidence 45666554 5899999999999999999999987764333 2444 4689998 999999999999999876
No 117
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.036 Score=60.73 Aligned_cols=70 Identities=11% Similarity=0.094 Sum_probs=62.2
Q ss_pred cccccCCCceeEEe-eccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 108 ITVRTSCGKELEFH-IDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 108 I~Vrt~~Gk~~~i~-Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
|.|| ..|+.+.++ ++.++|+..+|.++-..++++ |+.|++.+.|..+.|.-.+....|++|.+|+|+-..
T Consensus 6 v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~--PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 6 VIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVP--PERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred Eeee-ecCccccceeccCCCchHHHHHHHHHhcCCC--ccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 3444 568899988 999999999999999999987 999999999999999988888999999999997653
No 118
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=94.87 E-value=0.24 Score=53.37 Aligned_cols=142 Identities=20% Similarity=0.315 Sum_probs=79.8
Q ss_pred hhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCCCChhHHHHHHcCChHHH
Q 008120 407 EVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDAEQD 486 (577)
Q Consensus 407 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~Pfs~~~~~~i~~Ld~~~d 486 (577)
.+.-.+|.=|++.=.|||.||||+.. +|+ ++.||=|++|-.... +| | +-.-++.+.++.+-....+.
T Consensus 193 S~A~ysvv~YiLGigDRH~~NILi~~--~G~--~~HIDFG~ilg~~p~--~~-----~-~PFrLT~~mv~~mGg~~s~~- 259 (350)
T cd00896 193 SCAGYCVITYILGVGDRHLDNLLLTK--DGK--LFHIDFGYILGRDPK--PF-----P-PPMKLCKEMVEAMGGAQSEG- 259 (350)
T ss_pred HHHHHHHHHHHhcccccCCCcEEEcC--CCC--EEEEEhHHhhCCCCC--CC-----C-CCeeccHHHHHHhCCCCCcc-
Confidence 35566778888888999999999975 677 999999999964321 11 1 22223555554443222211
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccCCCC-CChHHHHHHHHHhhcCCCCChHHHHHHHH
Q 008120 487 IELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNK-ESVIEEIVREAQDSLLPGISEAAFLETVS 565 (577)
Q Consensus 487 ~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~~~~~-~s~le~~~~~a~~~~~~~~~~~~f~~~~~ 565 (577)
-+.++. +-...+.+||-..-++ ..+-.+|.-..+.. .+.-+..+...++.+.++.+|..-.+.+-
T Consensus 260 ~~~F~~----~c~~~~~~lR~~~~~i----------l~l~~lm~~~~ip~~~~~~~~~i~~l~~rf~l~~s~~ea~~~~~ 325 (350)
T cd00896 260 YQEFKS----YCCEAYNILRKSANLI----------LNLFSLMVDANIPDIALDPDKAILKVQEKFRLDLSDEEAIKHFQ 325 (350)
T ss_pred hHHHHH----HHHHHHHHHHhCHHHH----------HHHHHHHcCCCCcccccCHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 112221 1122333333322222 12222232222211 12345667777777888999988888888
Q ss_pred HHHHHHHhhh
Q 008120 566 KITDYRLDKL 575 (577)
Q Consensus 566 ~~~~~~~~~~ 575 (577)
.+++.-++..
T Consensus 326 ~lI~~s~~~~ 335 (350)
T cd00896 326 NLINDSVNAL 335 (350)
T ss_pred HHHHHHHhhh
Confidence 8777766543
No 119
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=94.77 E-value=0.074 Score=43.59 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=46.5
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccce
Q 008120 34 LSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHL 98 (577)
Q Consensus 34 Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~L 98 (577)
|..+++...+.|.|+.|+.++-+..-+++|+.+++-.|.|+++.|. -+.+++-.|+.+|+++.|
T Consensus 2 i~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ld-lslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 2 ICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLD-LSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp E-TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEES-SS-BHHHH---SS-EEEE
T ss_pred CccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEec-cccceeecCCCCCCEEeC
Confidence 3557899999999999999999999999999999999999999997 889999999999988754
No 120
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=94.70 E-value=0.088 Score=50.55 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=57.2
Q ss_pred EEEEE-EeCC----eEEEEEeCCCCCHHHHHHHHHHhhCCccccE-EEEEc-Ceecc-CCCCcccccccccc----cccc
Q 008120 30 ILIYL-SVSG----SLVPMRVLETDSIESVKLRIQTCKGFVVKKQ-KLVFG-GRELA-RNHSLVKDYGVTGG----NVLH 97 (577)
Q Consensus 30 M~I~V-tl~G----~~~~leV~~sdTV~~LK~kI~~~~Gip~~~Q-rLif~-Gk~L~-~D~~tL~dygI~dg----stL~ 97 (577)
|+|+| +++| .++.+.+.++.||.+|+.+|....+++...| .|++. ++.|. .++..+..+.-.+. .+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 68999 7888 6899999999999999999999999998885 46653 55553 25555666554433 3577
Q ss_pred eeeeeccc
Q 008120 98 LVLKLSDL 105 (577)
Q Consensus 98 LvlrLsd~ 105 (577)
|.+++.||
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 77777665
No 121
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=94.56 E-value=0.24 Score=53.39 Aligned_cols=142 Identities=21% Similarity=0.226 Sum_probs=78.3
Q ss_pred hhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCCC--ChhHHHHHHcCChHH
Q 008120 408 VHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPY--SPQTVDYIKSLDAEQ 485 (577)
Q Consensus 408 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~Pf--s~~~~~~i~~Ld~~~ 485 (577)
+--.+|+=|++.=.|||+||||+.. +|+ ++.||-|++|-..-+-.. +-| -..|| +++.++-+-..+.+.
T Consensus 195 ~A~ysv~~YiLgigDRH~~NILi~~--~G~--~~HIDFG~ilg~~~~~~~----~~~-E~~PFrLT~~mv~~mGg~~s~~ 265 (352)
T cd00891 195 CAGYCVATYVLGIGDRHNDNIMLTK--TGH--LFHIDFGHFLGNFKKKFG----IKR-ERAPFVLTPDMAYVMGGGDSEK 265 (352)
T ss_pred HHHHHHHHHHccccccCCCceEECC--CCC--EEEEehHHhhccCCccCC----CCC-CCCCeeecHHHHHHhCCCCCcc
Confidence 5556778888888999999999985 677 999999999953311111 001 12444 666666655444221
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCChHHHHHHHHHhhcCCCCChHHHHHHHH
Q 008120 486 DIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLETVS 565 (577)
Q Consensus 486 d~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~~ 565 (577)
. ..++. +-.+.+.+||-..-+| ..+..+|.-..+..-+. +.-+...++.+.++.+|..-.+.+-
T Consensus 266 ~-~~F~~----~c~~~~~~LR~~~~~i----------l~l~~lm~~~~lp~~~~-~~~i~~l~~r~~l~~s~~~a~~~~~ 329 (352)
T cd00891 266 F-QRFED----LCCKAYNILRKHGNLF----------INLFSLMLSAGIPELQS-IEDIEYLRDALALDKSDEEATEYFR 329 (352)
T ss_pred c-chHHH----HHHHHHHHHhcCHHHH----------HHHHHhhccCCCCccCc-HHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 1 11111 0022233333222222 12222333222211111 2334556667888999988888888
Q ss_pred HHHHHHHhh
Q 008120 566 KITDYRLDK 574 (577)
Q Consensus 566 ~~~~~~~~~ 574 (577)
++++.-++.
T Consensus 330 ~lI~~s~~~ 338 (352)
T cd00891 330 KLIHESLNS 338 (352)
T ss_pred HHHHHHHhc
Confidence 888777664
No 122
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=94.49 E-value=0.068 Score=44.99 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=50.1
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCC-CCC---ceEEE-ECCeecCCCCcccccCCCCCCEEEE
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFV-DVV---DQEIF-CDGEKLDDQRLIDDICKDNDAVIHL 176 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~-p~~---~QrLi-f~Gr~LeD~~tLsdy~I~~~svI~L 176 (577)
.+|+|...+|+.+.+.+..+.+|..|...|.+..+.+. +.. ..+|. -+|+.|.++++|++++|.+|+++.|
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 35666665578999999999999999999999887431 122 34566 6799999999999999999999987
No 123
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=94.48 E-value=0.076 Score=46.90 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=37.7
Q ss_pred EEEEEeC--CCCCHHHHHHHHHHhhC--CccccEEEEEcCeeccCCCCcccc
Q 008120 40 LVPMRVL--ETDSIESVKLRIQTCKG--FVVKKQKLVFGGRELARNHSLVKD 87 (577)
Q Consensus 40 ~~~leV~--~sdTV~~LK~kI~~~~G--ip~~~QrLif~Gk~L~~D~~tL~d 87 (577)
-.+++|. .+.||..||..|.+..+ ..-..+||+|+||.|. |+..|+.
T Consensus 13 Dl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~-d~t~l~~ 63 (97)
T PF10302_consen 13 DLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLN-DHTDLSS 63 (97)
T ss_pred CceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccC-ccchhhh
Confidence 3667776 78999999999999873 4445589999999999 7777664
No 124
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=94.23 E-value=0.44 Score=51.43 Aligned_cols=42 Identities=26% Similarity=0.434 Sum_probs=35.3
Q ss_pred hhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCC
Q 008120 407 EVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPEN 452 (577)
Q Consensus 407 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~ 452 (577)
..---+|.=|++.=.|||.||||+.. +|+ ++.||-|++|-..
T Consensus 194 S~AgysvvtYiLGigDRHn~NILi~~--~G~--~~HIDFG~ilg~~ 235 (354)
T cd05177 194 SCAGWCVVTFILGVCDRHNDNIMLTH--SGH--MFHIDFGKFLGHA 235 (354)
T ss_pred HHHHHHHHHHHhcccCcCCCceeEcC--CCC--EEEEehHHhcCCC
Confidence 34556778888889999999999976 677 9999999999754
No 125
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=94.01 E-value=0.36 Score=52.25 Aligned_cols=143 Identities=22% Similarity=0.247 Sum_probs=77.7
Q ss_pred hhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCCC--ChhHHHHHHcCChH-
Q 008120 408 VHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPY--SPQTVDYIKSLDAE- 484 (577)
Q Consensus 408 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~Pf--s~~~~~~i~~Ld~~- 484 (577)
.---+|.=|++.=.|||.||||+.. +|+ ++.||-|++|-.. .+| .-+-.-..|| +++.++-+-.....
T Consensus 204 ~AgYsV~tYiLGIgDRHndNImi~~--~G~--lfHIDFG~ilg~~---~~~--~gi~~E~~PFkLT~e~v~vmg~~gg~~ 274 (365)
T cd00894 204 CAGYCVATFVLGIGDRHNDNIMITE--TGN--LFHIDFGHILGNY---KSF--LGINKERVPFVLTPDFLFVMGTSGKKT 274 (365)
T ss_pred hHHHHHHHHhccccCccccceeEcC--CCC--EEEEeeHHhhCCC---Ccc--CCCCCCCCCeeecHHHHHHhCccCCcC
Confidence 4445667788888999999999986 676 9999999999642 121 1111123444 55555544432111
Q ss_pred -HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCChHHHHHHHHHhhcCCCCChHHHHHH
Q 008120 485 -QDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLET 563 (577)
Q Consensus 485 -~d~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~ 563 (577)
.....+++ +-.++...||-..-+ ..-+..||.-.++..-+. +.-+..-++.+.++.||+.=.+.
T Consensus 275 s~~f~~F~~----~c~~a~~~LRk~~~l----------il~L~~lM~~sgip~l~~-~~~i~~l~~~~~l~~se~eA~~~ 339 (365)
T cd00894 275 SLHFQKFQD----VCVKAYLALRHHTNL----------LIILFSMMLMTGMPQLTS-KEDIEYIRDALTVGKSEEDAKKH 339 (365)
T ss_pred ChhHHHHHH----HHHHHHHHHHhhHHH----------HHHHHHHHhcCCCcccCc-chHHHHHHHHhCCCCCHHHHHHH
Confidence 11223332 112333334433322 222333444332211111 12255566778888898877777
Q ss_pred HHHHHHHHHhh
Q 008120 564 VSKITDYRLDK 574 (577)
Q Consensus 564 ~~~~~~~~~~~ 574 (577)
+.+++..-++.
T Consensus 340 f~~~I~~s~~~ 350 (365)
T cd00894 340 FLDQIEVCRDK 350 (365)
T ss_pred HHHHHHHHHhc
Confidence 77777766654
No 126
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=93.91 E-value=0.43 Score=51.60 Aligned_cols=143 Identities=22% Similarity=0.231 Sum_probs=75.7
Q ss_pred hhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCC--CChhHHHHHHc--CCh
Q 008120 408 VHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREP--YSPQTVDYIKS--LDA 483 (577)
Q Consensus 408 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~P--fs~~~~~~i~~--Ld~ 483 (577)
.--.+|.=|++.=.|||.||||+.. +|+ ++.||-|++|-..-. .|. ..| -..| ++++.++-+.. ...
T Consensus 200 ~AgysVvtYiLGIGDRHn~NILi~~--~G~--l~HIDFG~ilg~~~~--~~~--~~~-E~vPFkLT~e~v~vmg~G~~~~ 270 (361)
T cd05174 200 CAGYCVATYVLGIGDRHSDNIMIRE--SGQ--LFHIDFGHFLGNFKT--KFG--INR-ERVPFILTYDFVHVIQQGKTNN 270 (361)
T ss_pred HHHHHHHHHHhcccCcCccceeEcC--CCC--EEEEehHHhhcCCcc--cCC--CCC-CCCCeeccHHHHHHHccCCCCC
Confidence 4456677888888999999999976 676 999999999964210 010 001 1223 45555544431 111
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCChHHHHHHHHHhhcCCCCChHHHHHH
Q 008120 484 EQDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLET 563 (577)
Q Consensus 484 ~~d~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~ 563 (577)
...-..++. +-...+.+||-..-++ +++ ..||.-..+..-.. +.-++.-++.+.++.||+.-.+.
T Consensus 271 s~~f~~F~~----~c~~a~~~LRk~~~~i-------l~l---~~lM~~sgip~~~~-~~~i~~l~~~~~l~~se~ea~~~ 335 (361)
T cd05174 271 SEKFERFRG----YCEQAYKILRRHGTLF-------LHL---FALMKAAGLPELNC-SKDIQYLKDSLALGKTEEEALKH 335 (361)
T ss_pred CchhhHHHH----HHHHHHHHHHhhHHHH-------HHH---HHHHhcCCCCccCc-hhHHHHHHHHhCCCCCHHHHHHH
Confidence 111122332 1123333444332222 222 22332211111011 24456677778888999877777
Q ss_pred HHHHHHHHHhh
Q 008120 564 VSKITDYRLDK 574 (577)
Q Consensus 564 ~~~~~~~~~~~ 574 (577)
+...+++-+.+
T Consensus 336 f~~~i~~s~~~ 346 (361)
T cd05174 336 FRVKFNEALRE 346 (361)
T ss_pred HHHHHHHHHhh
Confidence 77777666643
No 127
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=93.86 E-value=0.15 Score=41.80 Aligned_cols=63 Identities=10% Similarity=-0.018 Sum_probs=46.2
Q ss_pred cCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEE
Q 008120 112 TSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHL 176 (577)
Q Consensus 112 t~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~L 176 (577)
+.+++.+++.|.++.++.++-+...+++++. +++-.|.|+++.|+-...+.-.++.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~--~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLD--PSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT----GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCC--ccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 3578999999999999999999999999986 78899999999999899999999999998875
No 128
>COG5417 Uncharacterized small protein [Function unknown]
Probab=93.68 E-value=0.27 Score=41.28 Aligned_cols=68 Identities=15% Similarity=0.261 Sum_probs=54.8
Q ss_pred EEEEE--E-eCCeEEEEEeCCCCCHHHHHHHHHHhhCCcc-----ccEEEEEcCeeccCCCCcccccccccccccce
Q 008120 30 ILIYL--S-VSGSLVPMRVLETDSIESVKLRIQTCKGFVV-----KKQKLVFGGRELARNHSLVKDYGVTGGNVLHL 98 (577)
Q Consensus 30 M~I~V--t-l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~-----~~QrLif~Gk~L~~D~~tL~dygI~dgstL~L 98 (577)
|+|+| + .+|.++.++++...+|..|-.-+.+...+.. ...|..-.++.|. ++..|.||+|.+|+.+.+
T Consensus 5 ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~lls-gd~kL~d~~IadGD~Lei 80 (81)
T COG5417 5 IKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLS-GDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEec-CCceEEeccccCCCEEEe
Confidence 66676 2 5789999999999999999988887765422 2346777899998 999999999999997753
No 129
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=93.68 E-value=0.26 Score=41.30 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=59.8
Q ss_pred CCcEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHhhCCcccc-EEEE--EcCeeccCCC-Ccccccccccccccce
Q 008120 27 SESILIYLS-VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKK-QKLV--FGGRELARNH-SLVKDYGVTGGNVLHL 98 (577)
Q Consensus 27 ~~sM~I~Vt-l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~-QrLi--f~Gk~L~~D~-~tL~dygI~dgstL~L 98 (577)
.+...|.|+ .+|+.+.-...+++||.+|..-|......+... ..|+ |-.+.+..++ .+|++.|+..+.+|+|
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 566788885 478999999999999999999999887776654 6776 5678888555 7999999999998875
No 130
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=93.44 E-value=0.64 Score=50.16 Aligned_cols=143 Identities=19% Similarity=0.239 Sum_probs=74.5
Q ss_pred hhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCC--CChhHHHHHHcCChH
Q 008120 407 EVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREP--YSPQTVDYIKSLDAE 484 (577)
Q Consensus 407 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~P--fs~~~~~~i~~Ld~~ 484 (577)
..--.+|.=|++.=-|||.||||+.. +|+ ++-||-|++|-..- ++. -...-..| |+++.++-+..-...
T Consensus 193 S~A~ysvv~YiLgigDRH~~NILl~~--~G~--l~HIDFG~~lg~~~---~~~--~~~~E~~PFrLT~emv~~~ggg~~~ 263 (353)
T cd05166 193 SCAGCCVATYVLGICDRHNDNIMLTK--SGH--MFHIDFGKFLGHAQ---MFG--GFKRDRAPFVFTSDMAYVINGGDKP 263 (353)
T ss_pred HHHHHHHHHHHhhccccCCCceEECC--CCC--EEEEeeHHhccccc---ccc--cCCCCCCCccccHHHHHHhcCCCCC
Confidence 35556778888888999999999986 677 99999999996431 100 00012233 444444333211110
Q ss_pred -HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCChHHHHHHHHHhhcCCCCChHHHHHH
Q 008120 485 -QDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLET 563 (577)
Q Consensus 485 -~d~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~ 563 (577)
..-..+++ +-.+.+.+||-. .-..--+-.+|.-..+..-+. +.-+..-++.+.++.||+.-.+.
T Consensus 264 s~~~~~F~~----~c~~~~~~lRk~----------~~~il~ll~~ml~s~lp~~~~-~~~i~~l~~r~~l~~s~~ea~~~ 328 (353)
T cd05166 264 TQRFQDFVD----LCCRAYNIIRKH----------ANLLLNLLRMMACSGLPELSK-IQDLKYVRDALRPQLTDAEATIQ 328 (353)
T ss_pred cchHhHHHH----HHHHHHHHHHcC----------hHHHHHHHHHHhcCCCcccCc-hhHHHHHHHHhCCCCCHHHHHHH
Confidence 11122221 011222222221 112223333333322221111 23455666778888998877777
Q ss_pred HHHHHHHHHh
Q 008120 564 VSKITDYRLD 573 (577)
Q Consensus 564 ~~~~~~~~~~ 573 (577)
+.++++.-++
T Consensus 329 ~~~~I~~s~~ 338 (353)
T cd05166 329 FTKMIQSSLG 338 (353)
T ss_pred HHHHHHHHHh
Confidence 7777776654
No 131
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=0.44 Score=42.13 Aligned_cols=73 Identities=14% Similarity=0.241 Sum_probs=64.1
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
+.+.|+-.++.+..|.|.++.....|+..-+++.|+. .+..|.+|+|+.+.+.+|-.+.+.++++.|.++.-+
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~--~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q 93 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLS--MNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQ 93 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCc--cceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeec
Confidence 4455555667888899999999999999999999986 899999999999999999999999999999986543
No 132
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=0.16 Score=50.54 Aligned_cols=64 Identities=19% Similarity=0.296 Sum_probs=56.2
Q ss_pred CCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCC--CEEEEEE
Q 008120 113 SCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDND--AVIHLLV 178 (577)
Q Consensus 113 ~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~--svI~Lvv 178 (577)
.+++.+.+.+...+||.++|.++..+.++. +-.|+++|+|+.|-|...|..+++++| -++...|
T Consensus 154 tT~~d~~lta~~~Dtv~eik~~L~Aaeg~D--~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqviV 219 (231)
T KOG0013|consen 154 TTREDFWLTAPHYDTVGEIKRALRAAEGVD--PLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVIV 219 (231)
T ss_pred hhhhheeecccCcCcHHHHHHHHHHhhccc--hhhheeeccCCceeccccceeeeecCCCEEEEEEEe
Confidence 367889999999999999999999999975 789999999999999999999999999 4444434
No 133
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.16 Score=50.35 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=56.7
Q ss_pred EEEEEE--eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEE-EcC-----eeccCCCCcccccccccccccceee
Q 008120 30 ILIYLS--VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLV-FGG-----RELARNHSLVKDYGVTGGNVLHLVL 100 (577)
Q Consensus 30 M~I~Vt--l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLi-f~G-----k~L~~D~~tL~dygI~dgstL~Lvl 100 (577)
+.++|+ +......-+..++.||++||.|++...|.+++.+.|. |.| -.|.+++..|..|+..+|..||++=
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 456663 3233355567899999999999999999999999887 444 4788889999999999999998763
No 134
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=92.58 E-value=0.36 Score=40.48 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=56.1
Q ss_pred ccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCc-eEEE--ECCeecCCC--CcccccCCCCCCEEEE
Q 008120 105 LLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVD-QEIF--CDGEKLDDQ--RLIDDICKDNDAVIHL 176 (577)
Q Consensus 105 ~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~-QrLi--f~Gr~LeD~--~tLsdy~I~~~svI~L 176 (577)
...|.||..+|+.+.-...+++||.+|.+-|....... ... -.|+ |-.+.+.+. .+|.|.++.++++|++
T Consensus 6 ~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~--~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 6 VVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSP--EESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp EEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCT--TTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred EEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCC--CCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 34677778888989989999999999999998887654 332 5675 667888654 6999999999999886
No 135
>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac
Probab=92.40 E-value=0.27 Score=49.94 Aligned_cols=61 Identities=21% Similarity=0.177 Sum_probs=39.9
Q ss_pred eEeeeccCCCCCCCCCC---CCcc---hhhhhhheeeeeeeccCCC----------CCCceEEeeC--CCCceEEeeeec
Q 008120 384 SLQMFMKNDGNCEDMGP---GAFP---VEEVHKISVFDIRMANADR----------HAGNILIGKG--DNGQTVLIPIDH 445 (577)
Q Consensus 384 SlQ~fv~~~~~~~~~~~---~~f~---~~ev~ki~ilD~~i~N~DR----------~~gNiLv~~~--~~g~~~l~~IDh 445 (577)
-+++||++..-.+.... .... ..++-||-+||+.++|.|| |.+|||++.. .+| ...-+||-
T Consensus 94 limeYv~G~~l~~~~~~~~s~~~~~~~~~~LG~ii~lDi~inN~DRlPl~~~~~~GN~~Nil~~~~~~~~~-~~~~~~d~ 172 (238)
T cd05124 94 LIMEYVPGITLFKMTTHRASEYKGEERLIQLGKIIALDIFINNSDRLPLAIWRNSGNFDNIILKDIPNKNG-ATEDLIDS 172 (238)
T ss_pred eeeeecCCccchhhccccccchhhHHHHHHhhhhheeeeeecCCCCCCccccccCCCcceEEEEcccCcCC-Cceeeccc
Confidence 57888887654433222 1121 3468899999999999998 6788998772 222 34555655
No 136
>PF09192 Act-Frag_cataly: Actin-fragmin kinase, catalytic; InterPro: IPR015275 This domain assumes a secondary structure consisting of eight beta strands and 11 alpha-helices, organised in two lobes. It is predominantly found in actin-fragmin kinase, it is the catalytic domain that mediates the phosphorylation of actin []. ; PDB: 1CJA_A.
Probab=92.38 E-value=0.054 Score=56.20 Aligned_cols=140 Identities=23% Similarity=0.293 Sum_probs=66.2
Q ss_pred cccCC--CCcEEEEEcCCC-CeeEEEEecCCCCCcccCCCCCCCCCCCCCCccCCcccCCchhhhhhhhhhccCCCCCCC
Q 008120 267 RSSDG--TGGTYFMQDSTG-HEYVSVFKPIDEEPKAVNNPRGLPVSLDGEGLKRGTRVGEGALREVAAYVLDHPKSGPRS 343 (577)
Q Consensus 267 ~~~~G--s~gsyf~~~~~g-~~~~aVFKP~deEp~~~~nP~~~~~~~~~~~~~~g~~~geg~~rEvAAyllD~~~~~~~~ 343 (577)
++..| |||+||+..-+| .+..+|.|+..- -..|+=||+|-
T Consensus 32 ~s~~g~ns~gv~fv~~f~~~~~~avViK~s~t-----------------------------~~~E~~~s~La-------- 74 (275)
T PF09192_consen 32 HSEHGVNSGGVFFVATFSGSKEEAVVIKFSST-----------------------------IQQEVFASELA-------- 74 (275)
T ss_dssp EEEE-STTS-EEEEEETTE----EEEEE--TT-----------------------------HHHHHHHHHHH--------
T ss_pred hhccccCCCCEEEEEEcCCCceEEEEEecCCc-----------------------------hHHHHHHHHHH--------
Confidence 34455 999999996554 235889998643 36899999994
Q ss_pred CcccccCCCCCCceeEEEeccCCccCCc---------cc-----ccccCCCcceeEeeeccCCCCCCCCCCC-Ccc----
Q 008120 344 LSGETMGFAGIPPTVMVRCLHEGFNHPE---------GY-----EHALKNVKLGSLQMFMKNDGNCEDMGPG-AFP---- 404 (577)
Q Consensus 344 ~~~~~lgf~~VP~T~~v~~~~~~f~~~~---------~~-----~~~~~~~k~GSlQ~fv~~~~~~~~~~~~-~f~---- 404 (577)
..||. -+|--.+++...+-|.-=. +. -...+....=-+++||++ ....++... .|.
T Consensus 75 ---~~Lgv-~~P~~Rii~~~~~E~~e~~~~l~~a~~~~~~l~~~i~~el~~a~~liMeyv~G-~~L~e~~~~~~f~~~~~ 149 (275)
T PF09192_consen 75 ---RWLGV-PTPQMRIIESSSSEFQEMSEALLFATSNDDELGDFICSELDKAFFLIMEYVPG-KPLNELNHKEYFSPEKS 149 (275)
T ss_dssp ---HHCT------EEEEESSSHHHHHHHHHHH----HH-SSS-HHHHHCT-SEEEEEE---E-EESTT--SS--SHHHHS
T ss_pred ---HHhCC-CCCceeeeecCCHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCC-CCccccCcccccCCcch
Confidence 46776 6777777754442111000 00 000111122346777774 223333322 132
Q ss_pred ----hhhhhhheeeeeeeccCCCCC------------CceEEeeCCCCceEEeeeecCCcC
Q 008120 405 ----VEEVHKISVFDIRMANADRHA------------GNILIGKGDNGQTVLIPIDHGYCL 449 (577)
Q Consensus 405 ----~~ev~ki~ilD~~i~N~DR~~------------gNiLv~~~~~g~~~l~~IDhGl~f 449 (577)
..++-+|-+||+.++|.||-. .|||+....+| +.+..||..++-
T Consensus 150 ~~~~~~~LG~ii~fDi~inN~DRlP~~~l~W~n~gN~~Nil~~~~p~~-~~~~~i~~~i~~ 209 (275)
T PF09192_consen 150 GEKRLEQLGRIIAFDIFINNFDRLPCRILNWRNEGNPSNILFYEKPNG-WYFSLIDSNITC 209 (275)
T ss_dssp -HHHHHHHHHHHHHHHHHT--SSS----SSS-S---GGGEEEESB--T-T-EEE-S-----
T ss_pred HHHHHHHHHhHHhhhhhhcCcccCcccccccCCCCChhheEEeccccc-ceeeeccccccc
Confidence 346889999999999999966 57888764343 668888888763
No 137
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=91.90 E-value=0.74 Score=49.83 Aligned_cols=142 Identities=23% Similarity=0.254 Sum_probs=73.6
Q ss_pred hhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCCC--ChhHHHHHH-cCChH
Q 008120 408 VHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPY--SPQTVDYIK-SLDAE 484 (577)
Q Consensus 408 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~Pf--s~~~~~~i~-~Ld~~ 484 (577)
.---+|.=|++.=.|||.||||+.. +|+ ++.||=|++|-..- ..+. .-.-..|| +++.++-+. .....
T Consensus 200 ~AgYsvvtYILGIGDRHn~NILi~~--~G~--l~HIDFG~ilg~~~--~~~~---~~~E~vPFkLT~emv~vm~~G~~g~ 270 (362)
T cd05173 200 CAGYCVATYVLGIGDRHSDNIMVRK--NGQ--LFHIDFGHILGNFK--SKFG---IKRERVPFILTYDFIHVIQQGKTGN 270 (362)
T ss_pred HHHHHHHHHHhhccccCCCceEECC--CCC--EEEEehHHhhccCC--cccC---CCCCCCCeeecHHHHHHHhcCCCCC
Confidence 4456677888888999999999975 677 99999999996421 0110 00123444 555554443 11000
Q ss_pred -HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCChHHHHHHHHHhhcCCCCChHHHHHH
Q 008120 485 -QDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLET 563 (577)
Q Consensus 485 -~d~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~ 563 (577)
+.-..+++ +-..++.+||-..-+ .--+..||.-.++..-+. +.-|+..++.+.++.||+.-.+.
T Consensus 271 s~~~~~F~~----~c~~a~~~LRk~~~l----------il~l~~lM~~s~ip~~~~-~~~i~~l~~r~~l~~se~eA~~~ 335 (362)
T cd05173 271 TEKFGRFRQ----YCEDAYLILRKNGNL----------FITLFALMLTAGLPELTS-VKDIQYLKDSLALGKSEEEALKQ 335 (362)
T ss_pred CcchhHHHH----HHHHHHHHHHhhHHH----------HHHHHHHHhcCCCccccc-hhHHHHHHHhcCCCCCHHHHHHH
Confidence 11112221 112333333332222 112222232222111111 23356667778888999876666
Q ss_pred HHHHHHHHHh
Q 008120 564 VSKITDYRLD 573 (577)
Q Consensus 564 ~~~~~~~~~~ 573 (577)
+-+.++.-++
T Consensus 336 f~~~i~~s~~ 345 (362)
T cd05173 336 FRQKFDEALR 345 (362)
T ss_pred HHHHHHHHHH
Confidence 6666666664
No 138
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=91.84 E-value=0.93 Score=49.16 Aligned_cols=142 Identities=24% Similarity=0.271 Sum_probs=75.7
Q ss_pred hhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCCC--ChhHHHHHHcCChH-
Q 008120 408 VHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPY--SPQTVDYIKSLDAE- 484 (577)
Q Consensus 408 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~Pf--s~~~~~~i~~Ld~~- 484 (577)
.--.+|.=|++.=-|||.||||+.. +|+ ++.||-|++|-..-+ +|. +---..|| +++.++.+.....+
T Consensus 204 ~AgysvvtYiLGigDRH~~NILi~~--~G~--l~HIDFG~ilg~~~~--~~~---i~~E~~PFkLT~emv~~mg~~~~~~ 274 (366)
T cd05165 204 CAGYCVATFVLGIGDRHNDNIMVKE--TGQ--LFHIDFGHILGNYKS--KFG---INRERVPFVLTPDFVHVIGRGKKDN 274 (366)
T ss_pred HHHHHHHHHHhhccccCCcceEEcC--CCC--EEEEehHHhhccCCc--cCC---CCCCCCCeeecHHHHHHhcccCCcC
Confidence 4456778888888999999999986 677 999999999943211 110 00012333 55555444322111
Q ss_pred --HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCChHHHHHHHHHhhcCCCCChHHHHH
Q 008120 485 --QDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLE 562 (577)
Q Consensus 485 --~d~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~ 562 (577)
+....++. +-...+.+||-..-++ .-+..||.-.++..-+ -+.-+..-++.+..+.||+.-.+
T Consensus 275 ~s~~f~~F~~----~c~~a~~~LR~~~~~i----------l~l~~lM~~s~ip~~~-~~~~i~~lr~rf~l~~se~eA~~ 339 (366)
T cd05165 275 TSEHFQRFQD----LCEKAYLALRRHGNLL----------IILFSMMLMSGLPELT-SKEDIEYLRDTLALGKSEEEALK 339 (366)
T ss_pred CChhhhHHHH----HHHHHHHHHHhCHHHH----------HHHHHHHhcCCCcccC-chhHHHHHHHHhCCCCCHHHHHH
Confidence 11123332 1133344444333222 1222333322211111 12345666677778888887777
Q ss_pred HHHHHHHHHHh
Q 008120 563 TVSKITDYRLD 573 (577)
Q Consensus 563 ~~~~~~~~~~~ 573 (577)
.+..++..-++
T Consensus 340 ~f~~~I~~s~~ 350 (366)
T cd05165 340 YFLDKFNEALD 350 (366)
T ss_pred HHHHHHHHHHh
Confidence 77777776665
No 139
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=91.10 E-value=2 Score=46.32 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=35.4
Q ss_pred hhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCC
Q 008120 407 EVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPEN 452 (577)
Q Consensus 407 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~ 452 (577)
.+---+|.=|++.=.|||.||||+.. +|+ ++.||=|++|-..
T Consensus 193 S~AgYsv~tYiLGIgDRHn~NILi~~--~Gh--l~HIDFG~ilg~~ 234 (353)
T cd05176 193 SCAGCCVATYVLGICDRHNDNIMLRS--TGH--MFHIDFGKFLGHA 234 (353)
T ss_pred HHHHHHHHhhhccccCcCCcceEEcC--CCC--EEEEeeHHhcCCC
Confidence 35556788889999999999999976 677 9999999999753
No 140
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=90.56 E-value=1.1 Score=37.59 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=56.6
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEE--EcCeeccCC--CCcccccccccccccce
Q 008120 28 ESILIYLS-VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLV--FGGRELARN--HSLVKDYGVTGGNVLHL 98 (577)
Q Consensus 28 ~sM~I~Vt-l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLi--f~Gk~L~~D--~~tL~dygI~dgstL~L 98 (577)
+..+|.|+ .+|+.+......++||.+|.+-|....+.......|+ |-.+.+.++ +.+|.+.|+..+.+|.|
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 45678885 5789999999999999999999976666666667776 557788744 47999999988887754
No 141
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=90.43 E-value=0.88 Score=38.20 Aligned_cols=70 Identities=6% Similarity=-0.023 Sum_probs=54.0
Q ss_pred ccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEE--ECCeecCC---CCcccccCCCCCCEEEE
Q 008120 105 LLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIF--CDGEKLDD---QRLIDDICKDNDAVIHL 176 (577)
Q Consensus 105 ~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLi--f~Gr~LeD---~~tLsdy~I~~~svI~L 176 (577)
...|.||..+|+.+.-....++|+.+|.+-|....+.. .....|+ |-.+.+.+ +.+|.+.++..+++|.+
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~--~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDG--NDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCC--CCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 34677888899999989999999999999996655432 3445665 66777854 47899999988888875
No 142
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.19 E-value=0.89 Score=38.52 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=52.9
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEE--ECCeecCC-CCcccccCCCCCCEEE
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIF--CDGEKLDD-QRLIDDICKDNDAVIH 175 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLi--f~Gr~LeD-~~tLsdy~I~~~svI~ 175 (577)
.+|.||..+|+.+.-....++||.+|.+-|....+.. ......|. |-.+.|.| +.||.|.|+.+.+++.
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~-~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~q 76 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEF-AARPFTLMTAFPVKELSDESLTLKEANLLNAVIVQ 76 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCC-CCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEEE
Confidence 4677888999999989999999999999998875432 13455665 67888855 7899999998655443
No 143
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=90.14 E-value=0.94 Score=43.62 Aligned_cols=72 Identities=13% Similarity=0.152 Sum_probs=51.8
Q ss_pred cccccccCCC----ceeEEeeccCCchhhhHHHHHhhCCCCCCCCc-eEEEE-CCeec--CCCCcccccCCCCC----CE
Q 008120 106 LLITVRTSCG----KELEFHIDRYRNVGYLKQRIARKGKGFVDVVD-QEIFC-DGEKL--DDQRLIDDICKDND----AV 173 (577)
Q Consensus 106 m~I~Vrt~~G----k~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~-QrLif-~Gr~L--eD~~tLsdy~I~~~----sv 173 (577)
|.|+|.+.+| .++.+.+.++.||.+|+.+|....+++ ... +.|.+ .++.| .+...++.+.-.++ -+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~--~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~ 78 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIP--SSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFIT 78 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCC--ccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceE
Confidence 5789999999 588899999999999999999999876 444 44565 45555 45566666654333 24
Q ss_pred EEEEEe
Q 008120 174 IHLLVQ 179 (577)
Q Consensus 174 I~Lvvr 179 (577)
++|.++
T Consensus 79 l~l~~r 84 (162)
T PF13019_consen 79 LRLSLR 84 (162)
T ss_pred EEEEEe
Confidence 555544
No 144
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.90 E-value=1.3 Score=37.59 Aligned_cols=67 Identities=13% Similarity=0.186 Sum_probs=53.3
Q ss_pred cEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHhhCC-ccccEEEE--EcCeeccCCCCcccccccccccc
Q 008120 29 SILIYLS-VSGSLVPMRVLETDSIESVKLRIQTCKGF-VVKKQKLV--FGGRELARNHSLVKDYGVTGGNV 95 (577)
Q Consensus 29 sM~I~Vt-l~G~~~~leV~~sdTV~~LK~kI~~~~Gi-p~~~QrLi--f~Gk~L~~D~~tL~dygI~dgst 95 (577)
.-+|.|+ .+|+.+..+.+.++||.+|.+-|....+- ......|. |-.+.|.+++.||.+.|+.+..+
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v 74 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI 74 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence 4577785 47899999999999999999999986542 23456676 67899998899999999986443
No 145
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=89.13 E-value=0.46 Score=48.49 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=47.9
Q ss_pred EEEEE-EeCC-eEEE-EEeCCCCCHHHHHHHHHHh-hCCccccEEEEE----cCeeccCCCCcccccccccccccc
Q 008120 30 ILIYL-SVSG-SLVP-MRVLETDSIESVKLRIQTC-KGFVVKKQKLVF----GGRELARNHSLVKDYGVTGGNVLH 97 (577)
Q Consensus 30 M~I~V-tl~G-~~~~-leV~~sdTV~~LK~kI~~~-~Gip~~~QrLif----~Gk~L~~D~~tL~dygI~dgstL~ 97 (577)
|.|++ +.++ .... ...+..+||.+++.+|.+. ..+.+..||+.+ .|++|. |+++|++|+..+|.++.
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~-~~s~l~e~~~~s~~~i~ 75 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLI-DNSKLQEYGDGSGATIY 75 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCcccc-chhHHHHhccCCCCEEE
Confidence 67788 3333 3333 6677899999999766655 556665555443 599999 99999999998886554
No 146
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=88.68 E-value=1.5 Score=43.88 Aligned_cols=112 Identities=15% Similarity=0.111 Sum_probs=58.9
Q ss_pred CcEEEEEEeCC----eEEEEEeCCCCCHHHHHHHHHHhhCCccc---cEEEE--EcCe---eccCCCCcccccccccccc
Q 008120 28 ESILIYLSVSG----SLVPMRVLETDSIESVKLRIQTCKGFVVK---KQKLV--FGGR---ELARNHSLVKDYGVTGGNV 95 (577)
Q Consensus 28 ~sM~I~Vtl~G----~~~~leV~~sdTV~~LK~kI~~~~Gip~~---~QrLi--f~Gk---~L~~D~~tL~dygI~dgst 95 (577)
..|+|+..-.+ +.+.+-|..+.||.+|..+++.+.+++.+ ..||+ +++| .+. .+.+|... .+..+
T Consensus 19 k~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~-~d~~i~~l--~~~~~ 95 (213)
T PF14533_consen 19 KQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILS-EDEPISSL--NDYIT 95 (213)
T ss_dssp --EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE--TTSBGGGS----TTE
T ss_pred eEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecC-CCCchhhc--cCcce
Confidence 34566653222 46888999999999999999999998765 33443 4555 455 66666654 22222
Q ss_pred cceeeeec----------cccccccc-------cCCCceeEEeeccCCchhhhHHHHHhhCCCC
Q 008120 96 LHLVLKLS----------DLLLITVR-------TSCGKELEFHIDRYRNVGYLKQRIARKGKGF 142 (577)
Q Consensus 96 L~LvlrLs----------d~m~I~Vr-------t~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~ 142 (577)
+.+-.-.. +.+-|.|- -..|-.|.+.|.+++|..++|+||++++|++
T Consensus 96 ~r~E~ip~ee~~~~~~~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~ 159 (213)
T PF14533_consen 96 LRIEEIPEEELNLDDESEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVS 159 (213)
T ss_dssp EEEEE--GGGSS--TT--TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---
T ss_pred eeeecCChHHhhcccccccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCC
Confidence 22211111 11223222 1247788899999999999999999999875
No 147
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=87.68 E-value=1.2 Score=38.85 Aligned_cols=73 Identities=11% Similarity=0.227 Sum_probs=64.9
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceee
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVL 100 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvl 100 (577)
..-+.+.| ..+|.++.+.|..+.|...|........|-..+..|++|+|+.+. -++|-.|++..+++.|.++.
T Consensus 22 t~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~-~dqTP~dldmEdnd~iEav~ 95 (103)
T COG5227 22 TKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRID-LDQTPGDLDMEDNDEIEAVT 95 (103)
T ss_pred ccccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecC-CCCChhhcCCccchHHHHHH
Confidence 34567777 578899999999999999999999999999999999999999998 99999999999999887654
No 148
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=87.34 E-value=5.3 Score=43.38 Aligned_cols=41 Identities=32% Similarity=0.480 Sum_probs=34.3
Q ss_pred hhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCC
Q 008120 408 VHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPEN 452 (577)
Q Consensus 408 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~ 452 (577)
+---+|.=|++.=.|||.||||+.. +|+ ++.||=|++|-..
T Consensus 203 ~AgYsV~tYiLGIgDRHndNImi~~--~G~--l~HIDFG~iLg~~ 243 (366)
T cd05175 203 CAGYCVATFILGIGDRHNSNIMVKD--DGQ--LFHIDFGHFLDHK 243 (366)
T ss_pred HHHHHHHHHHhcccccCccceeEcC--CCC--EEEEehHHhhcCC
Confidence 4456677888888999999999986 677 9999999999543
No 149
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=87.10 E-value=2.3 Score=35.87 Aligned_cols=68 Identities=9% Similarity=0.094 Sum_probs=53.9
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEE--ECCeecCC---CCcccccCCCCCCEEEE
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIF--CDGEKLDD---QRLIDDICKDNDAVIHL 176 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLi--f~Gr~LeD---~~tLsdy~I~~~svI~L 176 (577)
..|.||..+|+.+.-....++|+.+|.+-|....+. .....|+ |--+.+.+ ..+|.+.++.+.++|.+
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~---~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGN---GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCC---CCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 457788888998888888999999999999876542 2445565 67788854 58999999999998875
No 150
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.09 E-value=0.61 Score=54.03 Aligned_cols=68 Identities=28% Similarity=0.467 Sum_probs=43.7
Q ss_pred hhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCCCChhHHHHHHcCChH
Q 008120 408 VHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDAE 484 (577)
Q Consensus 408 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~Pfs~~~~~~i~~Ld~~ 484 (577)
+---.+.=|++-=-|||+||||+.. +|+ ++.||-|+-+-.+..-.-|+- |-..|+.|.++.+--||.+
T Consensus 687 lagYSLvcYlLQvKDRHNGNILiD~--EGH--IIHIDFGFmLsnsPgnvgFEs-----APFKLT~EylEvmgG~~~d 754 (847)
T KOG0903|consen 687 LAGYSLVCYLLQVKDRHNGNILIDE--EGH--IIHIDFGFMLSNSPGNVGFES-----APFKLTTEYLEVMGGLDSD 754 (847)
T ss_pred HHHHHHHHHhhhcccccCCceEecC--CCC--EEEEeeeeEecCCCCCccccc-----CchhhHHHHHHHhcCCcHH
Confidence 3344566677777899999999966 566 999999999986644333321 2233455555444444443
No 151
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=86.64 E-value=4.4 Score=35.29 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=47.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEE----cCe-eccCCCCcccccccccccccceeeeeccc
Q 008120 39 SLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVF----GGR-ELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 39 ~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif----~Gk-~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
..++...+..|||..++..+.+.+.| .++-||-- ++. .|.+.+.||.+.||.+|-+|.+-.+..||
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 47788899999999999999999999 56678763 243 46656789999999999999888777665
No 152
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=85.89 E-value=2.9 Score=34.53 Aligned_cols=69 Identities=20% Similarity=0.155 Sum_probs=52.5
Q ss_pred cccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEE----CC--eecCCCCcccccCCCCCCEEEEEEe
Q 008120 110 VRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFC----DG--EKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 110 Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif----~G--r~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
|+..+|....++|+++.|+.++=++|+.+.++. ..+---|.| +| .-|+..++|.++.........|.+|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~-e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~fr 75 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLK-EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFR 75 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTS-SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCC-CccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEE
Confidence 567889999999999999999999999999976 467778888 22 4577888888887663444443333
No 153
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=85.53 E-value=0.9 Score=48.63 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=65.3
Q ss_pred EEEEE--Ee-CCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCC-CCcccccccccccccceeeeeccc
Q 008120 30 ILIYL--SV-SGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARN-HSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 30 M~I~V--tl-~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D-~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
|.++| .+ ....+++.|..+-....++..++...|++...--|+|+++++..+ ...+.+||+++++++.+.-+.++.
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d~ 80 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSDP 80 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCCC
Confidence 45555 33 347889999999999999999999999999999999999999866 577999999999999888777766
No 154
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=85.26 E-value=0.29 Score=51.74 Aligned_cols=72 Identities=22% Similarity=0.318 Sum_probs=53.5
Q ss_pred ccccccCCC--ceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCC--CCCEEEEEE
Q 008120 107 LITVRTSCG--KELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKD--NDAVIHLLV 178 (577)
Q Consensus 107 ~I~Vrt~~G--k~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~--~~svI~Lvv 178 (577)
.++||..+. +.+.|..+...||++||..++..+--..=+.+|||+|+||.|.|+..|.|.-++ ...+.||+.
T Consensus 11 ~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvc 86 (391)
T KOG4583|consen 11 TLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVC 86 (391)
T ss_pred EEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 344555443 567788888999999999999887422126899999999999999999997643 345666653
No 155
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=85.21 E-value=1.3 Score=37.30 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=46.4
Q ss_pred eccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccC-CCCCCEEEEEE
Q 008120 122 IDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDIC-KDNDAVIHLLV 178 (577)
Q Consensus 122 Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~-I~~~svI~Lvv 178 (577)
|.++++|.++++-|....... ....-.|.++|+.|+|...|+++. ++++++|.|+.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~-~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETC-YLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred CChhhHHHHHHHHHHhCcccc-ceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence 567899999999999886522 256778999999999999998885 88899999864
No 156
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=84.96 E-value=3.5 Score=34.24 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=49.7
Q ss_pred ccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEE--ECCeecCC---CCcccccCCCCCCEE
Q 008120 107 LITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIF--CDGEKLDD---QRLIDDICKDNDAVI 174 (577)
Q Consensus 107 ~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLi--f~Gr~LeD---~~tLsdy~I~~~svI 174 (577)
.|.||..+|+.+.-....++|+.+|.+-|...... .....|+ |-.+.+.| +.+|.+.|+.+.+++
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~---~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~ 73 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP---AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVF 73 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC---CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEE
Confidence 57788888998888889999999999999877542 3445565 56677754 889999999854433
No 157
>COG5417 Uncharacterized small protein [Function unknown]
Probab=84.61 E-value=2.8 Score=35.31 Aligned_cols=66 Identities=11% Similarity=0.141 Sum_probs=54.3
Q ss_pred ccCCCceeEEeeccCCchhhhHHHHHhhCCCCC-CC--CceEEEECCeecCCCCcccccCCCCCCEEEE
Q 008120 111 RTSCGKELEFHIDRYRNVGYLKQRIARKGKGFV-DV--VDQEIFCDGEKLDDQRLIDDICKDNDAVIHL 176 (577)
Q Consensus 111 rt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~-p~--~~QrLif~Gr~LeD~~tLsdy~I~~~svI~L 176 (577)
+.-+|.++-+.+....+|..+-.-+.+...+.. +. .+.+..-.++.|.++..|.||+|.+|+.+.+
T Consensus 12 t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 12 TNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 345799999999999999998888877765332 22 4668889999999999999999999999875
No 158
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=84.40 E-value=4.8 Score=33.44 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=49.8
Q ss_pred EEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEE--EcCeeccC--CCCccccccccccc
Q 008120 30 ILIYLS-VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLV--FGGRELAR--NHSLVKDYGVTGGN 94 (577)
Q Consensus 30 M~I~Vt-l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLi--f~Gk~L~~--D~~tL~dygI~dgs 94 (577)
.+|.|+ .+|+.+.-....++||.+|.+-|.....- .....|+ |-.+.+.+ .+.+|.+.|+.+..
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~ 71 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEV 71 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccce
Confidence 457774 47888999999999999999999876543 4556676 45788874 68899999999443
No 159
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=84.07 E-value=4.1 Score=41.79 Aligned_cols=124 Identities=13% Similarity=0.215 Sum_probs=81.9
Q ss_pred CCCCcEEEEEE-e---CCeE---EEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcC------eeccCCCCcccccccc
Q 008120 25 SSSESILIYLS-V---SGSL---VPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGG------RELARNHSLVKDYGVT 91 (577)
Q Consensus 25 ~~~~sM~I~Vt-l---~G~~---~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~G------k~L~~D~~tL~dygI~ 91 (577)
...+.+.||++ + ..+. -.+-|..+++|+++-..|.+..|+|.+...++|.- ..+. ...++....+.
T Consensus 64 ~~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~-~~~t~~~~el~ 142 (249)
T PF12436_consen 64 DPSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPID-PNQTFEKAELQ 142 (249)
T ss_dssp -TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE---SSSBHHHTT--
T ss_pred CCCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcC-CCCchhhcccC
Confidence 34678999995 2 2222 23468999999999999999999999988888862 3565 89999999999
Q ss_pred cccccceeeeecc--------------------cccccccc---CCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCce
Q 008120 92 GGNVLHLVLKLSD--------------------LLLITVRT---SCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQ 148 (577)
Q Consensus 92 dgstL~LvlrLsd--------------------~m~I~Vrt---~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~Q 148 (577)
+|+.|..-..... .+.|.++- .++..|.+.++...|-.+|-++|++..++. |+..
T Consensus 143 ~GdIi~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~d--P~~l 220 (249)
T PF12436_consen 143 DGDIICFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVD--PEHL 220 (249)
T ss_dssp TTEEEEEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS---GGGE
T ss_pred CCCEEEEEeccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC--hHHE
Confidence 9998876654431 13344443 344689999999999999999999999975 7877
Q ss_pred EEE
Q 008120 149 EIF 151 (577)
Q Consensus 149 rLi 151 (577)
+|+
T Consensus 221 r~~ 223 (249)
T PF12436_consen 221 RFF 223 (249)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 160
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=82.67 E-value=5 Score=34.48 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=53.8
Q ss_pred ccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECC--eecC--------CCCcccccCCCCCCEE
Q 008120 105 LLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDG--EKLD--------DQRLIDDICKDNDAVI 174 (577)
Q Consensus 105 ~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~G--r~Le--------D~~tLsdy~I~~~svI 174 (577)
..+|.||..+|+.+.-....++||.+|..-|... +.. ++...|+.+= +.+. ...||.+.|+.+.++|
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~--~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L 80 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KET--PEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL 80 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCC--CCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence 4567788888888888888899999999999654 323 5778888654 7775 3679999999988887
Q ss_pred EE
Q 008120 175 HL 176 (577)
Q Consensus 175 ~L 176 (577)
.+
T Consensus 81 ~V 82 (85)
T cd01774 81 FV 82 (85)
T ss_pred EE
Confidence 65
No 161
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=82.45 E-value=6 Score=33.98 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=55.8
Q ss_pred CCcEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEc--Ceecc-------CCCCccccccccccccc
Q 008120 27 SESILIYLS-VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFG--GRELA-------RNHSLVKDYGVTGGNVL 96 (577)
Q Consensus 27 ~~sM~I~Vt-l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~--Gk~L~-------~D~~tL~dygI~dgstL 96 (577)
++..+|.|+ .+|+.+.-+...++||.+|..-|.. .+..+....|+.+ -|.+. +.+.||++.|+....+|
T Consensus 2 ~~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L 80 (85)
T cd01774 2 PDTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL 80 (85)
T ss_pred CceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence 356788885 5889999999999999999999965 4455577888865 37775 24779999999987776
Q ss_pred ce
Q 008120 97 HL 98 (577)
Q Consensus 97 ~L 98 (577)
.+
T Consensus 81 ~V 82 (85)
T cd01774 81 FV 82 (85)
T ss_pred EE
Confidence 54
No 162
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=82.41 E-value=4.7 Score=33.92 Aligned_cols=69 Identities=14% Similarity=0.266 Sum_probs=53.7
Q ss_pred cEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEE--EcCeeccCC--CCcccccccccccccce
Q 008120 29 SILIYLS-VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLV--FGGRELARN--HSLVKDYGVTGGNVLHL 98 (577)
Q Consensus 29 sM~I~Vt-l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLi--f~Gk~L~~D--~~tL~dygI~dgstL~L 98 (577)
.-+|.|+ .+|+.+.-....++||.+|.+-|+...+-. ....|+ |-.|.+.++ +.+|.+.|+.+..+|.|
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 3567775 588999999999999999999998765433 446666 557888632 58999999998888765
No 163
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=82.27 E-value=1.8 Score=36.44 Aligned_cols=58 Identities=22% Similarity=0.333 Sum_probs=45.7
Q ss_pred eCCCCCHHHHHHHHHHhhC-CccccEEEEEcCeeccCCCCccccc-ccccccccceeeeec
Q 008120 45 VLETDSIESVKLRIQTCKG-FVVKKQKLVFGGRELARNHSLVKDY-GVTGGNVLHLVLKLS 103 (577)
Q Consensus 45 V~~sdTV~~LK~kI~~~~G-ip~~~QrLif~Gk~L~~D~~tL~dy-gI~dgstL~LvlrLs 103 (577)
|+++++|.++++-+..... ..-....|.++|+.|. +...|++. |+++|.++.|+...-
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~-~~~el~~i~~~~~~~~L~lve~pY 60 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLD-DFVELSEIEGIKDGCVLELVEEPY 60 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccC-CchhhhhhhCCCCCcEEEEEecCC
Confidence 6789999999999987744 4456678999999997 88888886 577788887776553
No 164
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=82.07 E-value=1.8 Score=44.31 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=47.9
Q ss_pred cccccccCCC-ceeE-EeeccCCchhhhHHHHHhhC-CCCCCCCceEEEE----CCeecCCCCcccccCCCCCCEEEE
Q 008120 106 LLITVRTSCG-KELE-FHIDRYRNVGYLKQRIARKG-KGFVDVVDQEIFC----DGEKLDDQRLIDDICKDNDAVIHL 176 (577)
Q Consensus 106 m~I~Vrt~~G-k~~~-i~Vd~~~TV~~LK~kI~~~~-gi~~p~~~QrLif----~Gr~LeD~~tLsdy~I~~~svI~L 176 (577)
|.|++..-++ -..+ ...+...|+.+++++|..+. ++. +..+|+.+ +|+.|-|+.+|++||..++++|.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~--~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKIT--PYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccC--ccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 3455554333 2333 56677899999998876654 443 44444443 799999999999999999988774
No 165
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=82.07 E-value=0.59 Score=54.16 Aligned_cols=42 Identities=33% Similarity=0.617 Sum_probs=35.5
Q ss_pred hhhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCC
Q 008120 406 EEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPE 451 (577)
Q Consensus 406 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~ 451 (577)
...---.|+-|++.=.|||.||||+.. +|+ |+-||-|+.|-+
T Consensus 1135 ~S~AGYsViTYILgIgDRHngNILId~--dGh--LfHIDFGFILg~ 1176 (1374)
T PTZ00303 1135 ASAKLFLLLNYIFSIGDRHKGNVLIGT--NGA--LLHIDFRFIFSE 1176 (1374)
T ss_pred HHHHHHHHHHHHhccCcccCCceeEcC--CCC--EEEEecceeecC
Confidence 344556788889999999999999988 677 999999999974
No 166
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=80.81 E-value=0.87 Score=50.59 Aligned_cols=39 Identities=28% Similarity=0.404 Sum_probs=32.5
Q ss_pred hhhhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeee
Q 008120 405 VEEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPI 443 (577)
Q Consensus 405 ~~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~I 443 (577)
..++.+..+|.++|+|+|.|+.|+=+-.+.++.++|.|+
T Consensus 327 ~~~~~rr~~fN~LigN~D~H~KN~Sfl~~~~~~~~LAPa 365 (442)
T PRK09775 327 AQRAELLWAFGRLIANTDMHAGNLSFVLSDGRPLALAPV 365 (442)
T ss_pred HHHHHHHHHHhHHhcCCCCCccceEEEECCCCCeeecch
Confidence 346778899999999999999998776644568899987
No 167
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=80.26 E-value=3 Score=36.06 Aligned_cols=61 Identities=13% Similarity=0.226 Sum_probs=44.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120 40 LVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 40 ~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
.+...++-.+++..||..++.+.++.-+.-.++.+...|. ++++|.+.+|+-..++.+.+.
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~-~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLE-PHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE---TTSBTTTSS----SEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceec-CCccHHHhhccccCEEEEEEE
Confidence 4556677889999999999999999999999999998898 999999999998888886543
No 168
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=78.86 E-value=6.9 Score=33.52 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=38.5
Q ss_pred EEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCe
Q 008120 31 LIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGR 76 (577)
Q Consensus 31 ~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk 76 (577)
-|.|.+++ ++.|+|.++.+..+|.++|.++.++|++.-+|.|.-.
T Consensus 4 vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 4 VVKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 45554555 9999999999999999999999999988889988643
No 169
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=77.98 E-value=10 Score=32.21 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=57.3
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEE--EcCeecc--CCCCccccccccccccccee
Q 008120 28 ESILIYLS-VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLV--FGGRELA--RNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 28 ~sM~I~Vt-l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLi--f~Gk~L~--~D~~tL~dygI~dgstL~Lv 99 (577)
...+|.|+ .+|+...-+...++|+.+|-.-|... |.+....+|+ |--|.+. +.+.+|.+.|+....+|.+-
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 45678885 47899999999999999999999864 7777788887 5577775 34679999999988887654
No 170
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=77.96 E-value=8.3 Score=32.97 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=37.7
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCcc-ccEEEEEc
Q 008120 30 ILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVV-KKQKLVFG 74 (577)
Q Consensus 30 M~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~-~~QrLif~ 74 (577)
|+|.++++|..+.+.+.++.+..+|+++|..+.++.. ....|-|-
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~ 46 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL 46 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE
Confidence 5677788999999999999999999999999999864 44556553
No 171
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=76.59 E-value=1.2 Score=44.12 Aligned_cols=42 Identities=33% Similarity=0.548 Sum_probs=36.7
Q ss_pred hhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCC
Q 008120 407 EVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPEN 452 (577)
Q Consensus 407 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~ 452 (577)
.+--..++.|++.=.|||.+|||+.+ +|+ ++.||=|++|-..
T Consensus 92 SlA~~s~~~YilglgDRh~~NIli~~--~G~--v~hIDfg~~~~~~ 133 (202)
T smart00146 92 SCAGYSVITYILGLGDRHNDNIMLDK--TGH--LFHIDFGFILGNG 133 (202)
T ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeC--CCC--EEEEechhhhCcc
Confidence 46678899999999999999999984 677 8999999999754
No 172
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=76.50 E-value=1.5 Score=45.63 Aligned_cols=42 Identities=31% Similarity=0.574 Sum_probs=35.5
Q ss_pred hhhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCC
Q 008120 406 EEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLP 450 (577)
Q Consensus 406 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp 450 (577)
..+--.+++=|++.=.|||.+|||+.. .+|+ ++.||-|.||-
T Consensus 171 ~S~A~~Sv~~YilglgDRH~~NIll~~-~tG~--v~HIDfg~~f~ 212 (280)
T cd05169 171 RSLAVMSMVGYILGLGDRHPSNIMIDR-LTGK--VIHIDFGDCFE 212 (280)
T ss_pred HHHHHHHHHHhheeccCCCcceEEEEc-CCCC--EEEEecHHHHh
Confidence 346677888899999999999999988 3466 99999999994
No 173
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=76.21 E-value=1.8 Score=49.31 Aligned_cols=39 Identities=31% Similarity=0.585 Sum_probs=32.6
Q ss_pred eeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCC
Q 008120 412 SVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLP 450 (577)
Q Consensus 412 ~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp 450 (577)
-||..=...+|=|.|||||++...|..+++-.|||++--
T Consensus 316 qIf~~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~ 354 (538)
T KOG1235|consen 316 QIFKTGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAV 354 (538)
T ss_pred HHHhcCCccCCCCCCcEEEecCCCCCccEEEEccccccc
Confidence 366777889999999999997445677899999999765
No 174
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=75.34 E-value=15 Score=31.60 Aligned_cols=71 Identities=15% Similarity=0.278 Sum_probs=57.9
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEE--EcCeeccC--CCCccccccccccccccee
Q 008120 28 ESILIYLS-VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLV--FGGRELAR--NHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 28 ~sM~I~Vt-l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLi--f~Gk~L~~--D~~tL~dygI~dgstL~Lv 99 (577)
..-+|.|+ .+|+...-....++++.+|-.-|+. .|.+++...|+ |--|.+.. .+.||.+.|+....+|.|.
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 44578885 5899999999999999999999998 67788888888 55677742 3579999999998888764
No 175
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=74.93 E-value=6.9 Score=45.57 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=42.6
Q ss_pred EEEEE--EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeecc
Q 008120 30 ILIYL--SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELA 79 (577)
Q Consensus 30 M~I~V--tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~ 79 (577)
+.|+| ..+...+.+-+++++|+..++.+|...+|+|.+.|.|+|.|....
T Consensus 314 ~vvhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h 365 (732)
T KOG4250|consen 314 KVVHIFSMVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSH 365 (732)
T ss_pred heeEEEeeccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccc
Confidence 34555 356788999999999999999999999999999999999876443
No 176
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=74.89 E-value=9.8 Score=32.96 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=43.9
Q ss_pred eEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 118 LEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 118 ~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
+...++=..++..||..++.+.++. .+...+..++..|+.+++|.|.|++-...+.+.+.
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~--L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGIS--LSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S----SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCC--cCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 4456777889999999999999976 88889999999999999999999999999998765
No 177
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=74.80 E-value=15 Score=30.19 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=44.6
Q ss_pred EEEEeCCe--EEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 32 IYLSVSGS--LVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 32 I~Vtl~G~--~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
+.|+++|+ ...+++.++.||.+|-+.+ +++.+.-.+..+|+.+. . ++-+++|+.|.+.-..+|
T Consensus 5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-~-----~~~l~~gD~Veii~~V~G 69 (70)
T PRK08364 5 IRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-E-----DDPVKDGDYVEVIPVVSG 69 (70)
T ss_pred EEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-C-----CcCcCCCCEEEEEccccC
Confidence 44445554 6778888899999988765 66666666668898886 3 555778998887655544
No 178
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=73.36 E-value=1.3 Score=54.57 Aligned_cols=41 Identities=34% Similarity=0.624 Sum_probs=34.3
Q ss_pred hhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCC
Q 008120 408 VHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPEN 452 (577)
Q Consensus 408 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~ 452 (577)
..--+|+-|++.=-|||+||||+.. .|+ ++.||-|+.|-.+
T Consensus 1644 ~A~Ysv~s~lLq~KDRHNGNim~Dd--~G~--~iHIDFGf~~e~s 1684 (1803)
T KOG0902|consen 1644 MAGYSVLSYLLQIKDRHNGNIMIDD--QGH--IIHIDFGFMFESS 1684 (1803)
T ss_pred HHHHHHHHHHcccccccCCceeEcc--CCC--EEEEeeeeEEecC
Confidence 4456788899999999999999976 566 9999999999644
No 179
>PRK06437 hypothetical protein; Provisional
Probab=73.26 E-value=14 Score=30.20 Aligned_cols=61 Identities=11% Similarity=0.172 Sum_probs=45.4
Q ss_pred EEeCC-eEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 34 LSVSG-SLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 34 Vtl~G-~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
++.+| +...+++....||++|-++ .|++++.-.+..+|+.+. .++-+++|+.|.++--.+|
T Consensus 5 ~~v~g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~------~~~~L~dgD~Veiv~~V~G 66 (67)
T PRK06437 5 IRVKGHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL------EDHNVKKEDDVLILEVFSG 66 (67)
T ss_pred EEecCCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC------CceEcCCCCEEEEEecccC
Confidence 34444 6688888899999988765 478877777888999887 4566778999887655544
No 180
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=73.20 E-value=12 Score=30.74 Aligned_cols=61 Identities=8% Similarity=0.112 Sum_probs=44.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCC----ccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 39 SLVPMRVLETDSIESVKLRIQTCKGF----VVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 39 ~~~~leV~~sdTV~~LK~kI~~~~Gi----p~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
....+++..+.||.+|.+.+....+- ....-.+..+|+... . ++-+++|+.|.++...+||
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-~-----~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 16 DEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-L-----DTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-C-----CcccCCCCEEEEeCCCCCC
Confidence 45677888899999999999877542 223445667888776 3 4567789999888766654
No 181
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=73.19 E-value=2.5 Score=42.99 Aligned_cols=43 Identities=26% Similarity=0.416 Sum_probs=36.6
Q ss_pred hhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCC
Q 008120 407 EVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPEN 452 (577)
Q Consensus 407 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~ 452 (577)
.+--.+++=|++.=.|||.+|||+.+ ++|+ ++-||=|.||-..
T Consensus 127 S~A~~S~~~YilglgDRH~~NIli~~-~tG~--v~HIDfg~~f~~~ 169 (235)
T cd05172 127 SLAAMCVSHWILGIGDRHLSNFLVDL-ETGG--LVGIDFGHAFGTA 169 (235)
T ss_pred HHHHHHHHhheeeccCCCcccEEEEC-CCCc--EEEEeeHhhhccC
Confidence 46667889999999999999999986 3566 9999999999754
No 182
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=73.06 E-value=15 Score=30.36 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=38.9
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcC
Q 008120 30 ILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGG 75 (577)
Q Consensus 30 M~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~G 75 (577)
+.|.+..+|..+.+.+.++.|..+|+.+|++..+++.....|-|..
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 2 VDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred ccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 4566667889999999999999999999999999876677777763
No 183
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=72.55 E-value=15 Score=31.62 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=54.4
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEE--ECCeecC---CCCcccccCCCCCCEEEE
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIF--CDGEKLD---DQRLIDDICKDNDAVIHL 176 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLi--f~Gr~Le---D~~tLsdy~I~~~svI~L 176 (577)
-+|.||..+|+.+.-....++++.+|-.-+... +.+ ++..+|+ |=-|.+. .+.+|.+.|+.+.++|.+
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~-g~~--~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfV 78 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQSK-GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFV 78 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCC--CCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEE
Confidence 368888999999998888899999999988884 433 6777777 5556662 257999999999999886
No 184
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=71.51 E-value=7.3 Score=31.24 Aligned_cols=54 Identities=11% Similarity=0.212 Sum_probs=38.7
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCccccccccccccccee
Q 008120 30 ILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 30 M~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lv 99 (577)
|+|+| +| ..+++..+.|+.+||.++.... -.++++|-+.. + |+-+++|+.|.+.
T Consensus 1 M~I~v--N~--k~~~~~~~~tl~~lr~~~k~~~------DI~I~NGF~~~-~-----d~~L~e~D~v~~I 54 (57)
T PF14453_consen 1 MKIKV--NE--KEIETEENTTLFELRKESKPDA------DIVILNGFPTK-E-----DIELKEGDEVFLI 54 (57)
T ss_pred CEEEE--CC--EEEEcCCCcCHHHHHHhhCCCC------CEEEEcCcccC-C-----ccccCCCCEEEEE
Confidence 55555 22 3466788899999999876533 36899999998 5 4555678887664
No 185
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=70.99 E-value=10 Score=33.17 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=57.0
Q ss_pred ccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEE
Q 008120 107 LITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHL 176 (577)
Q Consensus 107 ~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~L 176 (577)
.+.|-..+|.++-+.|..+.+-..|-...+...|-. .+..|+.|+|+..+-.+|-.|++..++..|..
T Consensus 26 nLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~--m~slRfL~dG~rI~~dqTP~dldmEdnd~iEa 93 (103)
T COG5227 26 NLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKN--MSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEA 93 (103)
T ss_pred ceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcC--cceeEEEEcceecCCCCChhhcCCccchHHHH
Confidence 344444578889999999999999888888888865 78899999999999999999999998887754
No 186
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=70.61 E-value=2.7 Score=43.80 Aligned_cols=44 Identities=30% Similarity=0.484 Sum_probs=36.6
Q ss_pred hhhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCC
Q 008120 406 EEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPEN 452 (577)
Q Consensus 406 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~ 452 (577)
..+--.+++=|++.=.|||.+|||+.. .+|+ ++.||-|.||-..
T Consensus 171 ~S~A~~s~~~yilglgDRh~~NIll~~-~tG~--v~hiDf~~~f~~~ 214 (279)
T cd05171 171 RSVATSSIVGYILGLGDRHANNILIDE-KTAE--VVHIDLGIAFEQG 214 (279)
T ss_pred HHHHHHHHHHHhhccCCCCcccEEEEc-CcCc--EEEEechhhhccC
Confidence 356677888899999999999999987 3466 9999999999644
No 187
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=70.57 E-value=2.7 Score=42.85 Aligned_cols=43 Identities=21% Similarity=0.412 Sum_probs=36.2
Q ss_pred hhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCC
Q 008120 407 EVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPEN 452 (577)
Q Consensus 407 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~ 452 (577)
.+--.+++=|++.=.|||.+|||+.. .+|+ ++-||=|.||-..
T Consensus 130 SlA~~s~~~YilgigDRh~~NIli~~-~tG~--~~HIDfg~~~~~~ 172 (237)
T cd00892 130 STAVMSMVGYILGLGDRHGENILFDS-NTGD--VVHVDFNCLFDKG 172 (237)
T ss_pred HHHHHHHHHHHhccCCCCcccEEEEc-CCCc--EEEEehHhhhccc
Confidence 35567788899999999999999987 3466 8999999999854
No 188
>PF15051 FAM198: FAM198 protein
Probab=70.00 E-value=18 Score=38.32 Aligned_cols=114 Identities=21% Similarity=0.266 Sum_probs=61.4
Q ss_pred chhhhhhhhhhccCCCCCCCCcccccCCCCCCceeEEEeccCCcc--CCccc-----------------ccccCCCccee
Q 008120 324 GALREVAAYVLDHPKSGPRSLSGETMGFAGIPPTVMVRCLHEGFN--HPEGY-----------------EHALKNVKLGS 384 (577)
Q Consensus 324 g~~rEvAAyllD~~~~~~~~~~~~~lgf~~VP~T~~v~~~~~~f~--~~~~~-----------------~~~~~~~k~GS 384 (577)
+-+.||.||=||+ .||++.-=|+|-++...+..- |.+|. .+.+....-|.
T Consensus 74 ~D~~EVfAFHLDR-----------VLGLNRTLPaVsRkf~~~~l~yr~~dg~~rPvi~Wdp~i~~~~~~dq~s~~L~W~~ 142 (326)
T PF15051_consen 74 LDMSEVFAFHLDR-----------VLGLNRTLPAVSRKFEFQLLPYRYTDGQPRPVIWWDPDIQPDPNNDQNSVALTWGQ 142 (326)
T ss_pred CcHHHHHHHHHHH-----------HhcccccchHhHhhhcccccchhhcCCCcceeEEEccccccCCCCCccceecCHHH
Confidence 3789999999995 566666666655543332111 11221 12233444455
Q ss_pred EeeeccCCC------CCCCCCCCCcchhhhhhheeeeeeeccCCCCC-------------------------------Cc
Q 008120 385 LQMFMKNDG------NCEDMGPGAFPVEEVHKISVFDIRMANADRHA-------------------------------GN 427 (577)
Q Consensus 385 lQ~fv~~~~------~~~~~~~~~f~~~ev~ki~ilD~~i~N~DR~~-------------------------------gN 427 (577)
.|.-+++.. ...+.+.....-.|--|||+||.++-=-||=+ .|
T Consensus 143 YQ~lLk~~C~~~g~~Pk~~~~C~~IhH~EW~klALFDFLLQV~dRLDr~CCGF~P~~~d~Cv~~~l~~kC~n~~~l~L~H 222 (326)
T PF15051_consen 143 YQQLLKQRCWQNGRVPKPEWPCTGIHHHEWSKLALFDFLLQVHDRLDRYCCGFRPRPEDPCVEEGLHEKCRNPDELMLVH 222 (326)
T ss_pred HHHHHHHhcCCCCCcCCCCCCCCccchHHHHHHHHHHHHHHHHhhccccCCCCCCCCcChHHhccchhhcCCccceeeeE
Confidence 554443322 11122222222346679999999875444422 34
Q ss_pred eEEeeCCCCceEEeeeecCCcCC
Q 008120 428 ILIGKGDNGQTVLIPIDHGYCLP 450 (577)
Q Consensus 428 iLv~~~~~g~~~l~~IDhGl~fp 450 (577)
||+++ ...-+|+-|||.=.|.
T Consensus 223 Il~R~--~dp~hLVfidN~G~~~ 243 (326)
T PF15051_consen 223 ILVRK--SDPSHLVFIDNAGFFD 243 (326)
T ss_pred EEecc--CCCceEEEEcCCCCCC
Confidence 55554 3445799999876554
No 189
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=69.70 E-value=3.8 Score=48.53 Aligned_cols=37 Identities=35% Similarity=0.520 Sum_probs=32.6
Q ss_pred heeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCC
Q 008120 411 ISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPE 451 (577)
Q Consensus 411 i~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~ 451 (577)
-+|--|+++=.|||.+||||+. +|+ |.-||-|=.+-+
T Consensus 918 YcVATyVLGIgDRHsDNIMvke--~Gq--lFHIDFGHiLGh 954 (1076)
T KOG0904|consen 918 YCVATYVLGIGDRHSDNIMVKE--TGQ--LFHIDFGHILGH 954 (1076)
T ss_pred ceeeeeeecccccccCceEEec--cCc--EEEEEhhhhhcc
Confidence 4567789999999999999998 788 999999998874
No 190
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=69.34 E-value=10 Score=43.11 Aligned_cols=92 Identities=20% Similarity=0.200 Sum_probs=53.8
Q ss_pred eeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCCCChhHHHHHHcCChHHHHHHHHhcCCC
Q 008120 417 RMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDAEQDIELLKFYGWN 496 (577)
Q Consensus 417 ~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~Pfs~~~~~~i~~Ld~~~d~~~l~~~~~~ 496 (577)
=..=+|=|.|||+|.. +|+ ++.+|||+.=+-.-+...+ =.+.+-.+..-|.+.-++.+.+.|+-
T Consensus 285 gffHaDpHpGNi~v~~--~g~--i~~lDfGi~g~l~~~~r~~------------l~~~~~a~~~rD~~~v~~~~~~~G~~ 348 (517)
T COG0661 285 GFFHADPHPGNILVRS--DGR--IVLLDFGIVGRLDPKFRRY------------LAELLLAFLNRDYDRVAELHVELGYV 348 (517)
T ss_pred CccccCCCccceEEec--CCc--EEEEcCcceecCCHHHHHH------------HHHHHHHHHhhCHHHHHHHHHHhCCC
Confidence 3456899999999988 456 9999999864422111110 01122233344555666666677776
Q ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 008120 497 IPLECARTLRISTMLLKKGVERGLSAFSI 525 (577)
Q Consensus 497 ~~~~~~~~lr~~~~~Lk~~~~~glt~~~i 525 (577)
-+..+...+...+..+-.-. .|.++.++
T Consensus 349 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~ 376 (517)
T COG0661 349 PPDTDRDPLAAAIRAVLEPI-YGKPLEEI 376 (517)
T ss_pred CCccchHHHHHHHHHHHHhh-hCCChhhc
Confidence 66666666666665555433 44444433
No 191
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=65.94 E-value=3.7 Score=41.09 Aligned_cols=67 Identities=24% Similarity=0.314 Sum_probs=46.2
Q ss_pred hhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCCCChhHHHHHHcC
Q 008120 407 EVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSL 481 (577)
Q Consensus 407 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~Pfs~~~~~~i~~L 481 (577)
.+--.+++=|++.=.|||.+|||+.. .+|+ ++-||=|++|-..-.... -...--.++++..+.+-..
T Consensus 119 SlA~~s~~~YilglgDRh~~NIli~~-~~G~--~~hIDfg~~~~~~~~~~~-----~e~vPFRLT~~~~~~~g~~ 185 (219)
T cd00142 119 SLAGYSVAGYILGIGDRHPDNIMIDL-DTGK--LFHIDFGFIFGKRKKFLG-----RERVPFRLTPDLVNALGTG 185 (219)
T ss_pred HHHHHHHHHHHhccCCCCCccEEEEC-CCCe--EEEEeeHHhhCcCcCCCC-----CCCCCEeccHHHHHHhCCc
Confidence 46667888999999999999999987 3466 999999999964322110 0012334567777666655
No 192
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=64.49 E-value=5.3 Score=48.76 Aligned_cols=38 Identities=32% Similarity=0.473 Sum_probs=33.1
Q ss_pred hheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCC
Q 008120 410 KISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPE 451 (577)
Q Consensus 410 ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~ 451 (577)
--+|--|+++=+|||++|||.++ .|+ +.-||-|--+-+
T Consensus 1190 G~cVaTYVLGIcDRHNDNIMl~~--sGH--mFHIDFGKFLGh 1227 (1639)
T KOG0905|consen 1190 GWCVATYVLGICDRHNDNIMLTK--SGH--MFHIDFGKFLGH 1227 (1639)
T ss_pred cceeeeEeeecccccCCceEEec--cCc--EEEEehhhhcch
Confidence 35788999999999999999999 676 999999987764
No 193
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=63.39 E-value=24 Score=28.30 Aligned_cols=62 Identities=8% Similarity=0.159 Sum_probs=42.2
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 34 LSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 34 Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
|.++|+.+.+ + ..|+.+|...+ +++.+.-.+-.+++.+. .....++-+++|+.|.++-...|
T Consensus 3 i~~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~--~~~~~~~~L~dgD~Ieiv~~V~G 64 (65)
T PRK06488 3 LFVNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH--KEARAQFVLHEGDRIEILSPMQG 64 (65)
T ss_pred EEECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC--HHHcCccccCCCCEEEEEEeccC
Confidence 4557777776 3 35899888764 56654455678888886 34455677889999987655544
No 194
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=62.48 E-value=33 Score=28.38 Aligned_cols=45 Identities=11% Similarity=0.254 Sum_probs=38.8
Q ss_pred EEEEEEeCCeEEE-EEeCCCCCHHHHHHHHHHhhCCccccEEEEEc
Q 008120 30 ILIYLSVSGSLVP-MRVLETDSIESVKLRIQTCKGFVVKKQKLVFG 74 (577)
Q Consensus 30 M~I~Vtl~G~~~~-leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~ 74 (577)
+.|.+...|.... +.+..+.|..+|+.+|+...+.+.....|.|.
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 2 VRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp EEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred EEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 5677778887777 99999999999999999999998777788775
No 195
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=61.39 E-value=9.3 Score=43.55 Aligned_cols=78 Identities=26% Similarity=0.411 Sum_probs=48.5
Q ss_pred CCcEEEEEEe---CCeEEEEEeCCCCCHHHHHHHHHHh--hCCcccc------EEEEE--c--Ce-eccCCC--------
Q 008120 27 SESILIYLSV---SGSLVPMRVLETDSIESVKLRIQTC--KGFVVKK------QKLVF--G--GR-ELARNH-------- 82 (577)
Q Consensus 27 ~~sM~I~Vtl---~G~~~~leV~~sdTV~~LK~kI~~~--~Gip~~~------QrLif--~--Gk-~L~~D~-------- 82 (577)
-.++.++|.. .+..+.+.|...|||.++|+||-+. .+.|..+ .-|-+ + |+ .|.|.+
T Consensus 187 ~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~ 266 (539)
T PF08337_consen 187 YKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGG 266 (539)
T ss_dssp S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETT
T ss_pred eEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCC
Confidence 4567777632 2356899999999999999999766 4554433 33432 2 33 555322
Q ss_pred ----Ccccccccccccccceeeeecc
Q 008120 83 ----SLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 83 ----~tL~dygI~dgstL~LvlrLsd 104 (577)
.||++|+|.+|++|.|+.+..+
T Consensus 267 wkrLNTL~HY~V~dga~vaLv~k~~~ 292 (539)
T PF08337_consen 267 WKRLNTLAHYKVPDGATVALVPKQHS 292 (539)
T ss_dssp EEE--BHHHHT--TTEEEEEEES---
T ss_pred ceEeccHhhcCCCCCceEEEeecccc
Confidence 3788999999999988877643
No 196
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=60.72 E-value=3.8 Score=41.31 Aligned_cols=43 Identities=28% Similarity=0.530 Sum_probs=36.2
Q ss_pred hhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCC
Q 008120 407 EVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPEN 452 (577)
Q Consensus 407 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~ 452 (577)
.+--.+++=|++.=.|||.+|||+.. .+|+ ++-||=|.+|-..
T Consensus 122 SlA~~s~~~YvlglgDRh~~NIli~~-~tG~--v~hIDf~~~~~~~ 164 (222)
T cd05164 122 STAVMSIVGYILGLGDRHLDNILIDR-ETGE--VVHIDFGCIFEKG 164 (222)
T ss_pred HHHHHHHHHHHhccCCCCCceEEEEC-CCCc--EEEEccHHhhccC
Confidence 45567788999999999999999988 3466 8999999999754
No 197
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=60.57 E-value=33 Score=29.08 Aligned_cols=68 Identities=16% Similarity=0.074 Sum_probs=53.0
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEE--ECCeecC---CCCcccccCCCCCCEEEE
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIF--CDGEKLD---DQRLIDDICKDNDAVIHL 176 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLi--f~Gr~Le---D~~tLsdy~I~~~svI~L 176 (577)
.+|.||..+|+.+.-....++++..|-.-+... +.. +...+|+ |=-+++. .+.+|.|.|+...++|.+
T Consensus 5 ~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~--~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 5 SKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYP--IDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCC--CCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 466777788888888888999999999999875 433 5677776 5667774 257999999998888875
No 198
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=60.13 E-value=31 Score=28.78 Aligned_cols=70 Identities=10% Similarity=0.084 Sum_probs=45.3
Q ss_pred EEEEEE-------eCC-eEEEEEeCCCCCHHHHHHHHHHhhC-Cccc-c-EEEEEcCeeccCCCCcccccccccccccce
Q 008120 30 ILIYLS-------VSG-SLVPMRVLETDSIESVKLRIQTCKG-FVVK-K-QKLVFGGRELARNHSLVKDYGVTGGNVLHL 98 (577)
Q Consensus 30 M~I~Vt-------l~G-~~~~leV~~sdTV~~LK~kI~~~~G-ip~~-~-QrLif~Gk~L~~D~~tL~dygI~dgstL~L 98 (577)
|+|+|. ..| ....+++..+.||++|++.+..... +... . -.+..+|+... + ++-+++|++|.+
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-~-----~~~l~dgDeVai 75 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-E-----SAALKDGDELAI 75 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-C-----CcCcCCCCEEEE
Confidence 667773 234 5678888889999999999976541 1110 1 13456777654 3 445677999988
Q ss_pred eeeeccc
Q 008120 99 VLKLSDL 105 (577)
Q Consensus 99 vlrLsd~ 105 (577)
....+||
T Consensus 76 ~PpvsGG 82 (82)
T PLN02799 76 IPPISGG 82 (82)
T ss_pred eCCCCCC
Confidence 7666654
No 199
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=58.06 E-value=4.9 Score=42.54 Aligned_cols=43 Identities=26% Similarity=0.494 Sum_probs=36.2
Q ss_pred hhhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCC
Q 008120 406 EEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPE 451 (577)
Q Consensus 406 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~ 451 (577)
..+--++++=|++.=.|||.+|||+.. .+|+ ++.||=|.||-.
T Consensus 199 ~s~A~~s~~~yilglgDRh~~NIli~~-~tG~--v~hiDf~~~f~~ 241 (307)
T cd05170 199 RSTAVMSMIGYVIGLGDRHLDNVLIDL-KTGE--VVHIDYNVCFEK 241 (307)
T ss_pred HHHHHHHHHHHHccCCCCCCccEEEEc-CCCc--EEEEeeHhhhcc
Confidence 356678888899999999999999986 3566 999999999964
No 200
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=57.03 E-value=3.5 Score=43.51 Aligned_cols=68 Identities=19% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEE-EeCCeEEEE--EeC-C--CCCHHHHHHHHHH----------hhCCccccEE-----EEEcCeeccCC
Q 008120 23 GRSSSESILIYL-SVSGSLVPM--RVL-E--TDSIESVKLRIQT----------CKGFVVKKQK-----LVFGGRELARN 81 (577)
Q Consensus 23 ~~~~~~sM~I~V-tl~G~~~~l--eV~-~--sdTV~~LK~kI~~----------~~Gip~~~Qr-----Lif~Gk~L~~D 81 (577)
.|.+..+|.|++ .+....+.| ..- + +.||.++|..+++ ..++|.++.+ |.|+-+++. |
T Consensus 72 aPgs~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~-~ 150 (309)
T PF12754_consen 72 APGSSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVG-D 150 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCC-C
Confidence 334466777777 344333333 222 3 6899999999999 8999999999 999999997 8
Q ss_pred CCcccccccc
Q 008120 82 HSLVKDYGVT 91 (577)
Q Consensus 82 ~~tL~dygI~ 91 (577)
..+|.+..-.
T Consensus 151 ~ktl~e~l~~ 160 (309)
T PF12754_consen 151 SKTLAEVLAD 160 (309)
T ss_dssp ----------
T ss_pred cCcHHHHHhc
Confidence 9999987544
No 201
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=55.23 E-value=6.2 Score=42.12 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=45.4
Q ss_pred CcEEEEEE---eCCeEEEEEeCCCCCHHHHHHHHHHhhC--CccccEEEEEcCeeccCCCCcccccccc
Q 008120 28 ESILIYLS---VSGSLVPMRVLETDSIESVKLRIQTCKG--FVVKKQKLVFGGRELARNHSLVKDYGVT 91 (577)
Q Consensus 28 ~sM~I~Vt---l~G~~~~leV~~sdTV~~LK~kI~~~~G--ip~~~QrLif~Gk~L~~D~~tL~dygI~ 91 (577)
-+..++|+ ..-+..+|..+..-||.+||..++...- --..+|||+|.||.|. |+..|.|.-++
T Consensus 8 ~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgklll-d~qcl~d~lrk 75 (391)
T KOG4583|consen 8 FPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLL-DHQCLTDWLRK 75 (391)
T ss_pred cceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccc-cchhHHHHHHH
Confidence 34455553 2335567777788999999999987742 2235699999999998 88888875443
No 202
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=54.99 E-value=47 Score=31.83 Aligned_cols=62 Identities=19% Similarity=0.120 Sum_probs=45.0
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECC------eecCCCCcccccCC
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDG------EKLDDQRLIDDICK 168 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~G------r~LeD~~tLsdy~I 168 (577)
+.+.|...+|....+.++++.||.++-+.++.+.|+. ....-.|.+-. ..|+..+++.+...
T Consensus 4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~-~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~ 71 (207)
T smart00295 4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIR-ESEYFGLQFEDPDEDLSHWLDPAKTLLDQDV 71 (207)
T ss_pred EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCC-ccceeEEEEEcCCCCcCeeCCCccCHHHhcC
Confidence 4566778889999999999999999999999999985 34445566522 23444555555543
No 203
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=54.23 E-value=69 Score=27.85 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=37.3
Q ss_pred cEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEc
Q 008120 29 SILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFG 74 (577)
Q Consensus 29 sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~ 74 (577)
.|+|.|.+.|.+..+.|.++.+..+|..+|..+.++. ...+|-|.
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKyk 46 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMK 46 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEE
Confidence 4677777889999999999999999999999999985 34445444
No 204
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=53.95 E-value=47 Score=27.45 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=49.0
Q ss_pred CCceeEEeeccCCchhhhHHHHHhhC-CCCCCCCceEEE-ECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 114 CGKELEFHIDRYRNVGYLKQRIARKG-KGFVDVVDQEIF-CDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 114 ~Gk~~~i~Vd~~~TV~~LK~kI~~~~-gi~~p~~~QrLi-f~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
+|+...++...+....-+..+--+.. ++-.|++...|- -+|..|+-.+.+.|||+.++-++.|.++
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 57777777777777666666644443 333357777776 4788999899999999999999998775
No 205
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=53.91 E-value=33 Score=27.70 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=44.1
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 34 LSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 34 Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
|+++|+.+.+ .+..||.+|-.. .+++...--+.++|..+.+++.. .+ +++|+.|.++--..|
T Consensus 3 i~vNG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~~--~~-L~~gD~ieIv~~VgG 64 (65)
T PRK05863 3 VVVNEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDWA--TK-LRDGARLEVVTAVQG 64 (65)
T ss_pred EEECCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHhh--hh-cCCCCEEEEEeeccC
Confidence 4556776655 467788877654 57888888888999988755544 46 999999987654443
No 206
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=53.84 E-value=37 Score=27.86 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=35.9
Q ss_pred EEEEEeCCeEEEEEeC-CCCCHHHHHHHHHHhhCCccccEEEEEcC
Q 008120 31 LIYLSVSGSLVPMRVL-ETDSIESVKLRIQTCKGFVVKKQKLVFGG 75 (577)
Q Consensus 31 ~I~Vtl~G~~~~leV~-~sdTV~~LK~kI~~~~Gip~~~QrLif~G 75 (577)
.|.+..+|..+.+.+. .+.|..+|+.+|.+..+++.....|.|..
T Consensus 2 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 4566677888889888 89999999999999999876455555543
No 207
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=53.56 E-value=42 Score=36.63 Aligned_cols=68 Identities=12% Similarity=0.226 Sum_probs=53.2
Q ss_pred cEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHhhCC-ccccEEEE--EcCeeccCCCCccccccccccccc
Q 008120 29 SILIYLS-VSGSLVPMRVLETDSIESVKLRIQTCKGF-VVKKQKLV--FGGRELARNHSLVKDYGVTGGNVL 96 (577)
Q Consensus 29 sM~I~Vt-l~G~~~~leV~~sdTV~~LK~kI~~~~Gi-p~~~QrLi--f~Gk~L~~D~~tL~dygI~dgstL 96 (577)
+-.|.|. .+|......++.+.||.+|+.-|.....- +...|.|+ |--++|.|++.||++-|+.+-..+
T Consensus 305 tTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 305 TTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred cceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 3455553 37888888999999999999999988653 44467777 458999999999999999875544
No 208
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=52.86 E-value=24 Score=30.29 Aligned_cols=38 Identities=16% Similarity=0.071 Sum_probs=34.2
Q ss_pred eeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCee
Q 008120 117 ELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEK 156 (577)
Q Consensus 117 ~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~ 156 (577)
++.+.|.+..+..+|.++|.++.+++ .++..|.|..+.
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~--~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELP--AEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC--chhcEEEeccCC
Confidence 78899999999999999999999987 788999997654
No 209
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=52.41 E-value=28 Score=35.01 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=48.3
Q ss_pred eEEeeccCCchhhhHHHHHhhCCCCCCCCceEEE-ECC-----eecC-CCCcccccCCCCCCEEEEEEe
Q 008120 118 LEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIF-CDG-----EKLD-DQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 118 ~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLi-f~G-----r~Le-D~~tLsdy~I~~~svI~Lvvr 179 (577)
+.....++.||.++|.|+....|.. ++.++|. |.| -.|. +...|..|...+|-.||++=.
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~--~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTE--AESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCC--ccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 3456778899999999999999987 7888876 554 3464 468899999999999998744
No 210
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=51.79 E-value=41 Score=28.12 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=37.7
Q ss_pred EE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcC
Q 008120 33 YL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGG 75 (577)
Q Consensus 33 ~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~G 75 (577)
.| -.+|+...+.|.|++||.++-.++-++.|+.++.-.|++.|
T Consensus 3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 45 34788999999999999999999999999999998888764
No 211
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=51.70 E-value=57 Score=26.64 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=40.0
Q ss_pred eeEEeeccCCchhhhHHHHHhhCCC--CCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 117 ELEFHIDRYRNVGYLKQRIARKGKG--FVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 117 ~~~i~Vd~~~TV~~LK~kI~~~~gi--~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
...++++...||.+|.+++...... ........+..+|+... .+.-+++|+.|.++
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ 74 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAII 74 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEe
Confidence 4667887789999999999887532 00023456667888887 45567888998875
No 212
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=51.43 E-value=78 Score=25.86 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=42.6
Q ss_pred EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCcccc-EEEEE----cC--eeccCCCCcccccccc
Q 008120 35 SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKK-QKLVF----GG--RELARNHSLVKDYGVT 91 (577)
Q Consensus 35 tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~-QrLif----~G--k~L~~D~~tL~dygI~ 91 (577)
-++|+..+++|+++.|+.+|=++|.+..|+.-.+ .-|.| .| .=|. .+.+|.++...
T Consensus 3 llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~-~~k~l~~q~~~ 65 (80)
T PF09379_consen 3 LLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLD-LDKKLKKQLKK 65 (80)
T ss_dssp ESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE--SSSBGGGSTBT
T ss_pred CcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceecc-CcccHHHHcCC
Confidence 3688999999999999999999999999985333 56777 12 2344 67778877766
No 213
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=51.39 E-value=26 Score=30.41 Aligned_cols=45 Identities=9% Similarity=0.022 Sum_probs=35.7
Q ss_pred cccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCC-CCceEEEE
Q 008120 108 ITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVD-VVDQEIFC 152 (577)
Q Consensus 108 I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p-~~~QrLif 152 (577)
..+++..|+.+.+.+.++..+.+|++.|+++.|.... ...-.|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 4567889999999999999999999999999996510 13445555
No 214
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=50.41 E-value=71 Score=27.47 Aligned_cols=69 Identities=10% Similarity=0.155 Sum_probs=48.2
Q ss_pred CcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 28 ESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 28 ~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
..+.+.|+++|+.+.+ ....||.+|-.. .+++...--+-.+|..+. ...-.++-+++|+.|.++--..|
T Consensus 15 ~~~~m~I~VNG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp--r~~w~~t~L~egD~IEIv~~VgG 83 (84)
T PRK06083 15 AMVLITISINDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVVP--RSEWQSTVLSSGDAISLFQAIAG 83 (84)
T ss_pred CCceEEEEECCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEeC--HHHcCcccCCCCCEEEEEEEecC
Confidence 3456666777876655 567788877664 467766666778999886 45566777899999987654443
No 215
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=50.02 E-value=41 Score=27.79 Aligned_cols=65 Identities=26% Similarity=0.328 Sum_probs=49.8
Q ss_pred eCCeEEEEEeCCCCCHHHHHHHHHHhhC---CccccEEEE-EcCeeccCCCCcccccccccccccceeee
Q 008120 36 VSGSLVPMRVLETDSIESVKLRIQTCKG---FVVKKQKLV-FGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 36 l~G~~~~leV~~sdTV~~LK~kI~~~~G---ip~~~QrLi-f~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
.+|+...++.++....-.+.++--+..| -|++.=-|- -+|..|. -++.+.|||+..+.++.|.++
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD-~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLD-VNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEee-ccchhhhccccccceEEEEee
Confidence 4678888999998888777777655543 465555554 3578886 889999999999999988775
No 216
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=49.82 E-value=57 Score=27.10 Aligned_cols=61 Identities=7% Similarity=0.089 Sum_probs=42.8
Q ss_pred eEEEEEeCCC-CCHHHHHHHHHHhhC-Cc--cccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 39 SLVPMRVLET-DSIESVKLRIQTCKG-FV--VKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 39 ~~~~leV~~s-dTV~~LK~kI~~~~G-ip--~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
....+++..+ .||.+|+..+..... +. .....+..+|+... + +.-|++|+.|.+....+||
T Consensus 16 ~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~-~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 16 DEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVT-D-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred CeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcC-C-----CcCcCCCCEEEEeCCCCCC
Confidence 3467888876 899999999988764 11 12234556787766 3 4567789999887776654
No 217
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=49.11 E-value=45 Score=28.49 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=34.1
Q ss_pred CCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCee
Q 008120 113 SCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEK 156 (577)
Q Consensus 113 ~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~ 156 (577)
.+|..+.+.+.++.+..+|+++|++++++. +.....|-|-..+
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~-~~~~f~LkY~Dde 49 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLD-DMSAFDLKYLDDD 49 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCC-CCCeeEEEEECCC
Confidence 456788899999999999999999999864 2256677785544
No 218
>smart00455 RBD Raf-like Ras-binding domain.
Probab=48.52 E-value=51 Score=27.27 Aligned_cols=40 Identities=8% Similarity=0.074 Sum_probs=36.5
Q ss_pred eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcC
Q 008120 36 VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGG 75 (577)
Q Consensus 36 l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~G 75 (577)
.+|+...+.+.|+.||.++-.++-++.|+.++.-.|++.|
T Consensus 7 P~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 7 PDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 4688999999999999999999999999999988888855
No 219
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=47.72 E-value=59 Score=27.36 Aligned_cols=62 Identities=10% Similarity=0.069 Sum_probs=42.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCC-----c------cccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 39 SLVPMRVLETDSIESVKLRIQTCKGF-----V------VKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 39 ~~~~leV~~sdTV~~LK~kI~~~~Gi-----p------~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
....+++. ..||.+|.+.+.+...- - -....+..+|+... .+.. +-+++|+.|.+...++||
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~-~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVD-WGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecC-ccCC---CCCCCCCEEEEeCCCcCC
Confidence 45677776 89999999999877531 0 01244556788776 3221 567889999888777664
No 220
>smart00455 RBD Raf-like Ras-binding domain.
Probab=47.38 E-value=33 Score=28.36 Aligned_cols=44 Identities=9% Similarity=-0.092 Sum_probs=38.1
Q ss_pred ccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECC
Q 008120 109 TVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDG 154 (577)
Q Consensus 109 ~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~G 154 (577)
.|-..+|+...+.+.|+.|+.++-+++.++.|.. ++.-.++..|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~--~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLN--PECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCC--HHHEEEEEcC
Confidence 3456789999999999999999999999999986 7888888755
No 221
>PRK06437 hypothetical protein; Provisional
Probab=46.66 E-value=82 Score=25.66 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=39.5
Q ss_pred CCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 114 CGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 114 ~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
.++.-.++++...||.+|-+++ +++ ++..-+..+|+.+. .++-+++|+.|.++
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~L----gi~--~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv 61 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDL----GLD--EEEYVVIVNGSPVL-----EDHNVKKEDDVLIL 61 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHc----CCC--CccEEEEECCEECC-----CceEcCCCCEEEEE
Confidence 4566778888888888775543 554 67777889999997 56667788888875
No 222
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=46.56 E-value=32 Score=28.78 Aligned_cols=44 Identities=14% Similarity=0.021 Sum_probs=37.5
Q ss_pred ccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECC
Q 008120 109 TVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDG 154 (577)
Q Consensus 109 ~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~G 154 (577)
.|...+|+...+.|.++.||.++-.++.++.|+. ++.-.|++.|
T Consensus 3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~--~~~~~v~~~~ 46 (72)
T cd01760 3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLN--PECCDVFLLG 46 (72)
T ss_pred EEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCC--HHHEEEEEec
Confidence 4557889999999999999999999999999986 7777777654
No 223
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=46.55 E-value=40 Score=27.06 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=35.2
Q ss_pred CceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 115 GKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 115 Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
|+. ++++...|...||+++..... -++|+|=... .|+-+++|+.|.+.
T Consensus 7 ~k~--~~~~~~~tl~~lr~~~k~~~D--------I~I~NGF~~~-----~d~~L~e~D~v~~I 54 (57)
T PF14453_consen 7 EKE--IETEENTTLFELRKESKPDAD--------IVILNGFPTK-----EDIELKEGDEVFLI 54 (57)
T ss_pred CEE--EEcCCCcCHHHHHHhhCCCCC--------EEEEcCcccC-----CccccCCCCEEEEE
Confidence 454 566677899999987765422 5799998887 46667778888874
No 224
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=45.93 E-value=19 Score=38.91 Aligned_cols=68 Identities=9% Similarity=0.055 Sum_probs=56.4
Q ss_pred CCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCC--CCcccccCCCCCCEEEEEEecCCC
Q 008120 114 CGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDD--QRLIDDICKDNDAVIHLLVQKSAK 183 (577)
Q Consensus 114 ~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD--~~tLsdy~I~~~svI~Lvvrks~k 183 (577)
..+.+.+.|...-....++..++...++. .+..-|+|+++.+.+ ++.+..|+...++++.+--+.++.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~--~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d~ 80 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIV--YDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSDP 80 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcc--cchhhcccCCCccccchhhhhhhcccccceeEeccCCCCCC
Confidence 45788899999999999999999999987 777889999999954 578999999999998864444444
No 225
>PRK07440 hypothetical protein; Provisional
Probab=45.67 E-value=1e+02 Score=25.39 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=44.8
Q ss_pred EEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 32 IYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 32 I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
+.|+.+|+. +++....||.+|-. ..+++++.--+-.+|..+. ...-.++-+++|+.|.++--..|
T Consensus 5 m~i~vNG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~--r~~w~~~~L~~gD~IEIv~~v~G 69 (70)
T PRK07440 5 ITLQVNGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILH--RQFWEQTQVQPGDRLEIVTIVGG 69 (70)
T ss_pred eEEEECCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeC--HHHcCceecCCCCEEEEEEEecC
Confidence 344556665 45567789988775 3567766667779999886 34566777899999987654443
No 226
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=45.16 E-value=48 Score=26.51 Aligned_cols=63 Identities=16% Similarity=0.224 Sum_probs=42.9
Q ss_pred EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 35 SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 35 tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
+.+|+.+. +....||.+|.+++ +++.+.-.+..+|+.+.+ ..-.++-+++|+.|.+.-..+||
T Consensus 3 ~iNg~~~~--~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~--~~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 3 TVNGEPRE--VEEGATLAELLEEL----GLDPRGVAVALNGEIVPR--SEWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred EECCeEEE--cCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCH--HHcCceecCCCCEEEEEEeccCC
Confidence 44555554 45678999988775 466666777789998863 23334668889999877655543
No 227
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=45.14 E-value=84 Score=24.99 Aligned_cols=63 Identities=17% Similarity=0.343 Sum_probs=43.1
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 34 LSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 34 Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
|+.+|+.+ ++....||.++-.. .+++.+.--+..+|..+.+ ..-.++-+++|+.|.+.--..|
T Consensus 3 i~vNG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r--~~~~~~~l~~gD~vei~~~vgG 65 (66)
T PRK05659 3 IQLNGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPR--SQHASTALREGDVVEIVHALGG 65 (66)
T ss_pred EEECCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCH--HHcCcccCCCCCEEEEEEEecC
Confidence 45566655 55677898887754 5777777778889987762 3445666888999877654443
No 228
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=44.35 E-value=1.2e+02 Score=28.93 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=33.9
Q ss_pred CcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCcc
Q 008120 28 ESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVV 66 (577)
Q Consensus 28 ~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~ 66 (577)
..+.|.| ..+|....+.++++.|+.++-..+..+.|++.
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~ 41 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRE 41 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCc
Confidence 3467777 56889999999999999999999999999953
No 229
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=44.25 E-value=12 Score=40.29 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=46.4
Q ss_pred cEEEEE--EeCCeEEEEEeC-CCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcc
Q 008120 29 SILIYL--SVSGSLVPMRVL-ETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLV 85 (577)
Q Consensus 29 sM~I~V--tl~G~~~~leV~-~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL 85 (577)
++++.. ..+|....+.+. .++.+..+|.|+....+|++..|++.+.|.-|. |+.++
T Consensus 281 ~~~~~~~~~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~-d~~~~ 339 (341)
T KOG0007|consen 281 SIQVSRPVPADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLK-DNRSL 339 (341)
T ss_pred ceecccccCCCCceeeeccccccccccccccccccccccchhheeeccCCcccC-ccccc
Confidence 344444 467888888887 789999999999999999999999999999999 65544
No 230
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=44.09 E-value=92 Score=25.77 Aligned_cols=66 Identities=12% Similarity=0.204 Sum_probs=45.8
Q ss_pred EEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 31 LIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 31 ~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
.+++.++|+. +++....|+++|-.. .|++.+.--...+|..+. ...-.++-+++|+.|.++--..|
T Consensus 2 ~m~i~~ng~~--~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVp--r~~~~~~~l~~gD~ievv~~v~G 67 (68)
T COG2104 2 PMTIQLNGKE--VEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVP--RSQWADTILKEGDRIEVVRVVGG 67 (68)
T ss_pred cEEEEECCEE--EEcCCCCcHHHHHHH----hCCCCceEEEEECCEEcc--chhhhhccccCCCEEEEEEeecC
Confidence 4455555655 455566899998765 677777777789999886 34556777888888876654443
No 231
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=43.43 E-value=46 Score=39.08 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=38.0
Q ss_pred CCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeec
Q 008120 113 SCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKL 157 (577)
Q Consensus 113 ~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~L 157 (577)
.++..+.+.++++.|...++.+|.+.+|++ ...|.|+|.|...
T Consensus 322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tgip--e~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 322 VQATSHEYYVHADNTLHSLIERISKQTGIP--EGKQELLFEGGLS 364 (732)
T ss_pred ccceEEEEecChhhhHHHHHHHHHHhhCCC--CccceeeeecCcc
Confidence 456788899999999999999999999997 8999999987643
No 232
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=41.69 E-value=68 Score=25.89 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=47.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCC--ccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 40 LVPMRVLETDSIESVKLRIQTCKGF--VVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 40 ~~~leV~~sdTV~~LK~kI~~~~Gi--p~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
...+.+....||.+|.+.+.....- ....-.+..+|+... + .-.++-+++|+.|.++...+||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~-~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVP-D--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEG-G--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcC-C--ccCCcCcCCCCEEEEECCCCCC
Confidence 6778889999999999999877631 124566778999887 4 3566778899999887766654
No 233
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=41.67 E-value=48 Score=38.00 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=43.0
Q ss_pred CCceeEEeeccCCchhhhHHHHHhhC--CCCC----CCCceEEEE----CCe-ecCCC-------------CcccccCCC
Q 008120 114 CGKELEFHIDRYRNVGYLKQRIARKG--KGFV----DVVDQEIFC----DGE-KLDDQ-------------RLIDDICKD 169 (577)
Q Consensus 114 ~Gk~~~i~Vd~~~TV~~LK~kI~~~~--gi~~----p~~~QrLif----~Gr-~LeD~-------------~tLsdy~I~ 169 (577)
....+.+.|=..+||.++|+||-... +.|. .+++.-|.+ .|+ .|.|. +||..|+|.
T Consensus 200 ~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~ 279 (539)
T PF08337_consen 200 GSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVP 279 (539)
T ss_dssp SSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--
T ss_pred CCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCC
Confidence 34567888888999999999996652 2221 245555554 123 45443 478899999
Q ss_pred CCCEEEEEEecC
Q 008120 170 NDAVIHLLVQKS 181 (577)
Q Consensus 170 ~~svI~Lvvrks 181 (577)
+|+++-|+.++.
T Consensus 280 dga~vaLv~k~~ 291 (539)
T PF08337_consen 280 DGATVALVPKQH 291 (539)
T ss_dssp TTEEEEEEES--
T ss_pred CCceEEEeeccc
Confidence 999999976643
No 234
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=41.66 E-value=78 Score=27.08 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=33.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEc
Q 008120 40 LVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFG 74 (577)
Q Consensus 40 ~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~ 74 (577)
++.|.+.+..+.++|..+|.++...+++.-+|.|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 78899999999999999999999999999999986
No 235
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=39.68 E-value=74 Score=25.36 Aligned_cols=62 Identities=16% Similarity=0.249 Sum_probs=42.1
Q ss_pred EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 35 SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 35 tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
.++|+.+.+ ..+.||.+|...+ +++++.-.+..+|+.+.+ ..-.++-+++|+.|.+.....|
T Consensus 2 ~iNg~~~~~--~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~--~~~~~~~L~~gD~veii~~V~G 63 (64)
T TIGR01683 2 TVNGEPVEV--EDGLTLAALLESL----GLDPRRVAVAVNGEIVPR--SEWDDTILKEGDRIEIVTFVGG 63 (64)
T ss_pred EECCeEEEc--CCCCcHHHHHHHc----CCCCCeEEEEECCEEcCH--HHcCceecCCCCEEEEEEeccC
Confidence 345666555 5677899988764 566666667789998852 2344567889999987665554
No 236
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=39.64 E-value=6.7 Score=39.97 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=27.9
Q ss_pred EEeeeecCCcCCCCCCC--CCc------cccccCC-CCCCCChhHHHHHHc
Q 008120 439 VLIPIDHGYCLPENFED--CTF------DWLYWPQ-AREPYSPQTVDYIKS 480 (577)
Q Consensus 439 ~l~~IDhGl~fp~~~~~--~~~------~W~~wpq-a~~Pfs~~~~~~i~~ 480 (577)
--++|.||+.+|+.|+. ++| +|..=.. ++.||++..+..+..
T Consensus 106 a~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~ 156 (230)
T PHA02537 106 AEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLD 156 (230)
T ss_pred HHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 35789999999999975 333 3543322 488888876655443
No 237
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=39.59 E-value=1e+02 Score=26.45 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=31.6
Q ss_pred EEEEEeCCeEEEEEeCC--CCCHHHHHHHHHHhhCCc
Q 008120 31 LIYLSVSGSLVPMRVLE--TDSIESVKLRIQTCKGFV 65 (577)
Q Consensus 31 ~I~Vtl~G~~~~leV~~--sdTV~~LK~kI~~~~Gip 65 (577)
.|.++.+|.+..+.+++ +-|..+|++.|+...+++
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 46668899999999999 669999999999999998
No 238
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=39.51 E-value=70 Score=27.77 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=29.6
Q ss_pred EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCcc
Q 008120 35 SVSGSLVPMRVLETDSIESVKLRIQTCKGFVV 66 (577)
Q Consensus 35 tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~ 66 (577)
...|+++.+.+.++.++.+|+..|.++.|+..
T Consensus 7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~ 38 (86)
T cd06409 7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDD 38 (86)
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHhCCcc
Confidence 35799999999999999999999999999986
No 239
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=38.82 E-value=15 Score=37.85 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=35.1
Q ss_pred hhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCC
Q 008120 407 EVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPE 451 (577)
Q Consensus 407 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~ 451 (577)
.+--++++=|+++=.|||.+|||+.. ..|. ++.||-|.+|-.
T Consensus 145 s~A~~s~~gYilglgdRh~~nili~~-~tG~--v~hiDf~~~f~~ 186 (253)
T cd05163 145 QLALLSFMTYILSINNRNPDKIFISR-DTGN--VYQSDLLPSINN 186 (253)
T ss_pred HHHHHHHHHHHhcCCCCCchhEEEEc-CCCc--EEEEeeeeeecC
Confidence 45667888899999999999999988 3466 899999988853
No 240
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=38.80 E-value=78 Score=26.33 Aligned_cols=35 Identities=9% Similarity=-0.129 Sum_probs=30.5
Q ss_pred eeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEE
Q 008120 117 ELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIF 151 (577)
Q Consensus 117 ~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLi 151 (577)
...+.|..++|+.+|-+.+.+++++..++.+-.|+
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 66799999999999999999999985467888885
No 241
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=38.09 E-value=94 Score=34.84 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=54.3
Q ss_pred EEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCC----ccccEEEE---EcCeeccCCCCcccccccccccccceeeeec
Q 008120 31 LIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGF----VVKKQKLV---FGGRELARNHSLVKDYGVTGGNVLHLVLKLS 103 (577)
Q Consensus 31 ~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gi----p~~~QrLi---f~Gk~L~~D~~tL~dygI~dgstL~LvlrLs 103 (577)
+|+|.-..+...+-+..+.+|+++--.|.+..+- +....... -+|.+|+ .+.+|.+.||.||++++|..+..
T Consensus 4 RVtV~~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~-~~~sL~~~gV~DG~~L~L~p~~~ 82 (452)
T TIGR02958 4 RVTVLAGRRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLD-PDASLAEAGVRDGELLVLVPASA 82 (452)
T ss_pred EEEEeeCCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCC-CCCCHHHcCCCCCCeEEEeeCCC
Confidence 5666445567788888899999999999887764 22222333 4688998 99999999999999999876443
No 242
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=38.02 E-value=1.2e+02 Score=24.71 Aligned_cols=50 Identities=10% Similarity=0.013 Sum_probs=36.1
Q ss_pred eeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 117 ELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 117 ~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
...++++...||.+|-+++ +++ .+...+..+|+.... +.-+++|+.|.++
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~--~~~v~v~vNg~iv~~-----~~~l~~gD~Veii 64 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFN--TESAIAKVNGKVALE-----DDPVKDGDYVEVI 64 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCC--CccEEEEECCEECCC-----CcCcCCCCEEEEE
Confidence 5677888888999887766 433 455567789998853 5557788888774
No 243
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=37.35 E-value=26 Score=40.91 Aligned_cols=39 Identities=36% Similarity=0.620 Sum_probs=30.7
Q ss_pred hhhhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCC
Q 008120 405 VEEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPEN 452 (577)
Q Consensus 405 ~~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~ 452 (577)
++.|||++..- -|=+.+||||.. ||+++| -|-|||--=.
T Consensus 742 iesVHkmGFIH-----RDiKPDNILIDr--dGHIKL--TDFGLCTGfR 780 (1034)
T KOG0608|consen 742 IESVHKMGFIH-----RDIKPDNILIDR--DGHIKL--TDFGLCTGFR 780 (1034)
T ss_pred HHHHHhcccee-----cccCccceEEcc--CCceee--eeccccccce
Confidence 45699999764 477999999988 799766 5899996633
No 244
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=34.75 E-value=37 Score=37.08 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=54.4
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEE--ECCeecCC-CCcccccCCCCCCEEE
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIF--CDGEKLDD-QRLIDDICKDNDAVIH 175 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLi--f~Gr~LeD-~~tLsdy~I~~~svI~ 175 (577)
-.|-||..+|+.+...+..+.||.+|+.-|.....-. +...+.|+ |=-+.|.| ..||.+-++.|-.++.
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~-~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlvq 377 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGD-SSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLVQ 377 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCC-cCCceeeeecCCCcccCCcchhHHhccchhhhhhh
Confidence 4688999999999999999999999999999986532 24456665 56788855 7899999988766554
No 245
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=34.72 E-value=76 Score=26.10 Aligned_cols=40 Identities=13% Similarity=0.069 Sum_probs=33.2
Q ss_pred CCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCe
Q 008120 114 CGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGE 155 (577)
Q Consensus 114 ~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr 155 (577)
.|....+.+.+..|-.+|+++|+.+++.. .....|-|.+.
T Consensus 9 ~~~~~~~~~~~~~s~~dL~~~i~~~~~~~--~~~~~l~Y~De 48 (81)
T smart00666 9 GGETRRLSVPRDISFEDLRSKVAKRFGLD--NQSFTLKYQDE 48 (81)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHhCCC--CCCeEEEEECC
Confidence 56778899999999999999999999865 46677878753
No 246
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=34.45 E-value=1.7e+02 Score=23.12 Aligned_cols=62 Identities=11% Similarity=0.161 Sum_probs=39.0
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 34 LSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 34 Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
|+++|+.+. +.+..||+++.+.+. ++ ..-.+..+|+...+ ..-.+.-+++|++|.++-...|
T Consensus 3 i~vNg~~~~--~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~--~~~~~~~L~~gD~vei~~~v~G 64 (65)
T PRK06944 3 IQLNQQTLS--LPDGATVADALAAYG----AR-PPFAVAVNGDFVAR--TQHAARALAAGDRLDLVQPVAG 64 (65)
T ss_pred EEECCEEEE--CCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCc--hhcccccCCCCCEEEEEeeccC
Confidence 445666554 456789999887653 33 23455678887752 2233444778999987765554
No 247
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=34.30 E-value=1.2e+02 Score=27.09 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=45.1
Q ss_pred CceeEEeeccCCchhhhHHHHHhh----CCCCCCCC-ceEEEECCe--ecCCCCccccc-----CCCCCCEEEEEEec
Q 008120 115 GKELEFHIDRYRNVGYLKQRIARK----GKGFVDVV-DQEIFCDGE--KLDDQRLIDDI-----CKDNDAVIHLLVQK 180 (577)
Q Consensus 115 Gk~~~i~Vd~~~TV~~LK~kI~~~----~gi~~p~~-~QrLif~Gr--~LeD~~tLsdy-----~I~~~svI~Lvvrk 180 (577)
...+++.+++++|+.+|.+.+-.+ .+...+++ +-.|--.|+ -|.....|.+| |++.+..+||++..
T Consensus 28 ~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~~ 105 (108)
T smart00144 28 QQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLMT 105 (108)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEEe
Confidence 456889999999999998887665 22221233 555555565 35566666666 46789999998764
No 248
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=33.66 E-value=1e+02 Score=26.03 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=36.0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCe
Q 008120 37 SGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGR 76 (577)
Q Consensus 37 ~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk 76 (577)
+|+...+.+.|++||.++-.++-++.|+.++.-.++..|.
T Consensus 8 dg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 8 DGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 6788899999999999999999999999999888887664
No 249
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=33.48 E-value=1.3e+02 Score=27.42 Aligned_cols=50 Identities=12% Similarity=0.172 Sum_probs=39.8
Q ss_pred CCcEEEEEEeCC-----eEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCe
Q 008120 27 SESILIYLSVSG-----SLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGR 76 (577)
Q Consensus 27 ~~sM~I~Vtl~G-----~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk 76 (577)
...++|.++..| +.....|++++|++.+-..|....++++.+|-.+|=..
T Consensus 28 ~~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~ 82 (116)
T KOG3439|consen 28 IRKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNN 82 (116)
T ss_pred cceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcC
Confidence 456777774333 34667899999999999999999999999998877544
No 250
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=33.05 E-value=2.3e+02 Score=24.76 Aligned_cols=61 Identities=8% Similarity=0.178 Sum_probs=41.9
Q ss_pred ceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEE----CCe-ecCC-CCcccccCCCCCCEEEEEEe
Q 008120 116 KELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFC----DGE-KLDD-QRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 116 k~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif----~Gr-~LeD-~~tLsdy~I~~~svI~Lvvr 179 (577)
..++......+||..+++.+.+.+.+. ++-||-- ++. .|.+ +.|+.|.++.+|-+|.+=.|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i~---~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~r 80 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNIQ---EETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEER 80 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT-T---S-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE-
T ss_pred cHhHhhccccChHHHHHHHHHHHhCCC---ccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEee
Confidence 466778889999999999999999983 5677653 333 4655 57999999999998887555
No 251
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=33.04 E-value=1.8e+02 Score=23.32 Aligned_cols=63 Identities=8% Similarity=0.100 Sum_probs=41.1
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 34 LSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 34 Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
|+.+|+.+.+ ....||.+|...+ ++....-.+-.+++.+.+ ..-.++-+++|+.|.++-...|
T Consensus 3 i~vNg~~~~~--~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r--~~w~~~~L~~gD~Ieii~~v~G 65 (66)
T PRK08053 3 ILFNDQPMQC--AAGQTVHELLEQL----NQLQPGAALAINQQIIPR--EQWAQHIVQDGDQILLFQVIAG 65 (66)
T ss_pred EEECCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEEECCEEeCh--HHcCccccCCCCEEEEEEEccC
Confidence 3456666655 5667899888653 444444566788888863 3344556888999887655544
No 252
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=32.56 E-value=58 Score=26.31 Aligned_cols=61 Identities=18% Similarity=0.122 Sum_probs=44.7
Q ss_pred CCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 114 CGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 114 ~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
.| ...+.+....||.+|.+++..............+..+|+...+ .-.+.-+++|+.|.++
T Consensus 11 ~g-~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ 71 (77)
T PF02597_consen 11 AG-EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAIL 71 (77)
T ss_dssp HT-EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEE
T ss_pred hC-CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEE
Confidence 35 6678888999999999999988631101255678889999887 2445567788888875
No 253
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=32.04 E-value=2.2e+02 Score=23.72 Aligned_cols=37 Identities=14% Similarity=0.045 Sum_probs=30.7
Q ss_pred CceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEE
Q 008120 115 GKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIF 151 (577)
Q Consensus 115 Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLi 151 (577)
+...++.|+.++|..+|-+.+.++.++..++++-.|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 5667799999999999999999999976456666666
No 254
>PF07924 NuiA: Nuclease A inhibitor-like protein; InterPro: IPR012489 This family consists of protein sequences that are similar to the nuclease A inhibitor expressed by bacteria of the genus Anabaena (NuiA, Q44296 from SWISSPROT). This sequence is organised to form an alpha-beta-alpha sandwich fold, which is similar to the PR-1-like fold. NuiA interacts with nuclease A by means of residues located at one end of the molecule, including residues making up the loop between helices III and IV and the loop between strands C and D. The mechanism of inhibition of nuclease A by NuiA is as yet incompletely understood []. ; PDB: 2O3B_B 1J57_A 1KTU_A.
Probab=31.92 E-value=20 Score=33.53 Aligned_cols=38 Identities=26% Similarity=0.673 Sum_probs=26.3
Q ss_pred cCCcCCCCCCCCCccccccCCCCCCCChhHHHHHHcCChH
Q 008120 445 HGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDAE 484 (577)
Q Consensus 445 hGl~fp~~~~~~~~~W~~wpqa~~Pfs~~~~~~i~~Ld~~ 484 (577)
+||-||.+ .+++|+|++| +...|++++.+.....+-++
T Consensus 16 ~GLL~~SE-SdyPfe~f~w-~~~~~lt~~~v~~~~g~~~~ 53 (133)
T PF07924_consen 16 DGLLMPSE-SDYPFEVFYW-DPAEPLTPEKVLQLTGHPPD 53 (133)
T ss_dssp TTS-EESS-SEE--EEEEE-S-SSSSSTTHHHHHHT-TTT
T ss_pred cCceeccc-CCCcceEEEe-cCCCCCCHHHHHHHhCCCCC
Confidence 57777765 6799999999 78899999999887765543
No 255
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=31.76 E-value=1.8e+02 Score=25.34 Aligned_cols=44 Identities=7% Similarity=0.180 Sum_probs=33.7
Q ss_pred EEEEEeCCeEEEEEeCC-----CCCHHHHHHHHHHhhCCcc-ccEEEEEc
Q 008120 31 LIYLSVSGSLVPMRVLE-----TDSIESVKLRIQTCKGFVV-KKQKLVFG 74 (577)
Q Consensus 31 ~I~Vtl~G~~~~leV~~-----sdTV~~LK~kI~~~~Gip~-~~QrLif~ 74 (577)
.|.|+.+|....+.+.. +.+...|+.+|++.+.++. ....|.|.
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~ 51 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT 51 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 35667888887777774 7899999999999999987 33445453
No 256
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=31.50 E-value=2.1e+02 Score=23.60 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=39.1
Q ss_pred eeEEeeccC-CchhhhHHHHHhhCC-CCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 117 ELEFHIDRY-RNVGYLKQRIARKGK-GFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 117 ~~~i~Vd~~-~TV~~LK~kI~~~~g-i~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
...+++... .||.+|++.+.++.. .........+..+|+...+ +.-+++|+.|.++
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~ 74 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFI 74 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEe
Confidence 356888876 899999999988864 1101133456678888764 4567788888875
No 257
>PF07805 HipA_N: HipA-like N-terminal domain; InterPro: IPR012894 The members of this entry contain a region that is found towards the N terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=31.49 E-value=37 Score=28.29 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=40.7
Q ss_pred cCCCcccccCCCCcEEEEEcCCCCeeEEEEecCCCCCcccCCCCCCCCCCCCCCccCCcccCCchhhhhhhhhhccCCCC
Q 008120 261 RGNKPIRSSDGTGGTYFMQDSTGHEYVSVFKPIDEEPKAVNNPRGLPVSLDGEGLKRGTRVGEGALREVAAYVLDHPKSG 340 (577)
Q Consensus 261 ~g~~p~~~~~Gs~gsyf~~~~~g~~~~aVFKP~deEp~~~~nP~~~~~~~~~~~~~~g~~~geg~~rEvAAyllD~~~~~ 340 (577)
.|..|+++..=.+|.|......+ ..-.|.||..... .|. + ...|.+++.|=
T Consensus 3 ~G~qpK~~~~~~~~~~~~~~~~~-~~~~IvK~~~~~~----~~~---------------~----~~nE~~~~~lA----- 53 (81)
T PF07805_consen 3 GGAQPKLLLTLDPGRWALPAGDA-PSTHIVKFPSSRD----DPD---------------L----VENEYACMRLA----- 53 (81)
T ss_dssp -SSSCEEEEEEETTEEEEEETT----SEEEE-S-CEE----ETT---------------H----HHHHHHHHHHH-----
T ss_pred cccceeEEEEEcCCceeecCCCC-CceEEEeCCCccc----ccc---------------h----HHHHHHHHHHH-----
Confidence 47888887755557777776554 4578999988751 122 1 57899999994
Q ss_pred CCCCcccccCCCCCCceeEEEecc
Q 008120 341 PRSLSGETMGFAGIPPTVMVRCLH 364 (577)
Q Consensus 341 ~~~~~~~~lgf~~VP~T~~v~~~~ 364 (577)
+.+|+ -||.|.++...+
T Consensus 54 ------~~~Gi-~v~~~~l~~~~~ 70 (81)
T PF07805_consen 54 ------RAAGI-PVPETRLIRFGD 70 (81)
T ss_dssp ------HHTT------EEEEEETT
T ss_pred ------HHcCC-CcCceEEEEECC
Confidence 57899 899999986543
No 258
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=31.27 E-value=1.9e+02 Score=23.44 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=42.5
Q ss_pred EEeCCeEEEEEeCCC-CCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 34 LSVSGSLVPMRVLET-DSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 34 Vtl~G~~~~leV~~s-dTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
|+++|+.+.+ ... .||.+|-. ..+++++.--+-++|..+.+ ..-.++-+++|+.|.++--..|
T Consensus 3 I~vNG~~~~~--~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r--~~w~~~~L~~gD~iEIv~~VgG 66 (67)
T PRK07696 3 LKINGNQIEV--PESVKTVAELLT----HLELDNKIVVVERNKDILQK--DDHTDTSVFDGDQIEIVTFVGG 66 (67)
T ss_pred EEECCEEEEc--CCCcccHHHHHH----HcCCCCCeEEEEECCEEeCH--HHcCceecCCCCEEEEEEEecC
Confidence 4556776544 444 57877665 35677666667799999973 4556677899999987654443
No 259
>KOG3316 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.23 E-value=15 Score=35.21 Aligned_cols=59 Identities=25% Similarity=0.215 Sum_probs=42.9
Q ss_pred CcEEEEEcCCCCeeEEEEecCCCCCcccCCCCCCCCCCCCCCccCCcccCCchhhhhhhhhhccC
Q 008120 273 GGTYFMQDSTGHEYVSVFKPIDEEPKAVNNPRGLPVSLDGEGLKRGTRVGEGALREVAAYVLDHP 337 (577)
Q Consensus 273 ~gsyf~~~~~g~~~~aVFKP~deEp~~~~nP~~~~~~~~~~~~~~g~~~geg~~rEvAAyllD~~ 337 (577)
-|+|.++|-+ ...+=+=.+++.|+..-| +...++||+-||.+.+-|+.+=|-|.+-+.|
T Consensus 94 rG~yVlqD~~---Fr~l~~~s~G~~~~~~a~---~flaFpcGliRGvLs~LGi~siVtA~v~slP 152 (163)
T KOG3316|consen 94 RGTYVLQDNK---FRWLTSMSPGTQYLEEAP---KFLAFPCGLIRGVLSNLGISSIVTASVSSLP 152 (163)
T ss_pred CceEEEecCc---eeeeeecCchhHHHHhcC---CeEEeehhHHHHHHhhCCCceEEeeecCCCC
Confidence 4999999864 333333346666666555 3456899999999999999998888776543
No 260
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=30.01 E-value=30 Score=39.60 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=28.7
Q ss_pred eeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCC
Q 008120 413 VFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLP 450 (577)
Q Consensus 413 ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp 450 (577)
||.--+.-+|=|.|||||..+..+..+++.||.|++-.
T Consensus 276 if~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~ 313 (537)
T PRK04750 276 VFRDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGS 313 (537)
T ss_pred HHhCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEE
Confidence 45667888999999999988322234589999999643
No 261
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=29.47 E-value=1.6e+02 Score=24.44 Aligned_cols=33 Identities=15% Similarity=0.038 Sum_probs=28.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCC--ccccEEEE
Q 008120 40 LVPMRVLETDSIESVKLRIQTCKGF--VVKKQKLV 72 (577)
Q Consensus 40 ~~~leV~~sdTV~~LK~kI~~~~Gi--p~~~QrLi 72 (577)
..++.|++++|+.+|-..+.++.++ .+.+-.|+
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 8899999999999999999999998 44556674
No 262
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=28.94 E-value=1.3e+02 Score=25.72 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=41.4
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEE-cCeeccCCCCcccccccccccccceee
Q 008120 38 GSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVF-GGRELARNHSLVKDYGVTGGNVLHLVL 100 (577)
Q Consensus 38 G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif-~Gk~L~~D~~tL~dygI~dgstL~Lvl 100 (577)
+..+.+.+.+..||+++-+ ..|+|..+-.+++ +|+.-. - +|-+++|+.|.+..
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~-~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVD-F-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECC-C-----cccCCCCCEEEEEe
Confidence 4567888999999988765 5799999987765 888776 2 57788899887653
No 263
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=27.57 E-value=2e+02 Score=23.90 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=35.5
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHhhCCc--cccEEEE--Ec----CeeccCCCCccc
Q 008120 38 GSLVPMRVLETDSIESVKLRIQTCKGFV--VKKQKLV--FG----GRELARNHSLVK 86 (577)
Q Consensus 38 G~~~~leV~~sdTV~~LK~kI~~~~Gip--~~~QrLi--f~----Gk~L~~D~~tL~ 86 (577)
+...++.|+.++|..+|-..+.++.++. ++.-.|+ .. .+.|.+++..+.
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~ 68 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPLQ 68 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChHH
Confidence 6789999999999999999999999987 3444454 12 245664444443
No 264
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=27.10 E-value=37 Score=45.24 Aligned_cols=48 Identities=29% Similarity=0.301 Sum_probs=38.8
Q ss_pred hhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCC
Q 008120 407 EVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCT 457 (577)
Q Consensus 407 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~ 457 (577)
.|.-=.|+=|+++=.|||+-||||.. -..+++.||-|.+|-..--.+|
T Consensus 2616 svA~sS~VGyILGLGDRH~qNILid~---~taEviHIDlGiAFEQGkilpt 2663 (2806)
T KOG0892|consen 2616 SVAASSMVGYILGLGDRHGQNILIDQ---QTAEVIHIDLGIAFEQGKILPT 2663 (2806)
T ss_pred hHHHHHHHHHHhcccchhhhheeecc---cccceEEEeeeeehhcCCcCCC
Confidence 46667788999999999999999987 3456999999999975544444
No 265
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=26.80 E-value=55 Score=32.75 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=27.7
Q ss_pred cEEEEE-Ee-------CCeEEEEEeCCCCCHHHHHHHHHHhhCCcccc
Q 008120 29 SILIYL-SV-------SGSLVPMRVLETDSIESVKLRIQTCKGFVVKK 68 (577)
Q Consensus 29 sM~I~V-tl-------~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~ 68 (577)
.+.|.| .+ -|-.+.+.|.+++|..++|+||+++.|++-..
T Consensus 115 ~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ke 162 (213)
T PF14533_consen 115 EKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKE 162 (213)
T ss_dssp EEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHH
T ss_pred ceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhh
Confidence 477777 32 25678889999999999999999999997544
No 266
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=26.22 E-value=2.2e+02 Score=29.09 Aligned_cols=54 Identities=30% Similarity=0.428 Sum_probs=34.0
Q ss_pred cceeEeeeccCCCCCCCCCCCCcc----------hhhhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCC
Q 008120 381 KLGSLQMFMKNDGNCEDMGPGAFP----------VEEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGY 447 (577)
Q Consensus 381 k~GSlQ~fv~~~~~~~~~~~~~f~----------~~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl 447 (577)
...-+++|+++.. ..++. .++ +.++| +--+...|=|.||+|+.. +| ++-||=|.
T Consensus 117 ~~~lvmEyi~G~t-L~~~~--~~~~~~~~~i~~~l~~lH-----~~gi~H~Dikp~Nili~~--~g---i~liDfg~ 180 (232)
T PRK10359 117 TYIMLIEYIEGVE-LNDMP--EISEDVKAKIKASIESLH-----QHGMVSGDPHKGNFIVSK--NG---LRIIDLSG 180 (232)
T ss_pred CeEEEEEEECCcc-HHHhh--hccHHHHHHHHHHHHHHH-----HcCCccCCCChHHEEEeC--CC---EEEEECCC
Confidence 3456899998853 33332 111 12344 444567899999999977 45 88899544
No 267
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=24.78 E-value=24 Score=37.40 Aligned_cols=41 Identities=10% Similarity=0.197 Sum_probs=0.0
Q ss_pred CCchhhhHHHHHh----------hCCCCCCCCceE-----EEECCeecCCCCcccccC
Q 008120 125 YRNVGYLKQRIAR----------KGKGFVDVVDQE-----IFCDGEKLDDQRLIDDIC 167 (577)
Q Consensus 125 ~~TV~~LK~kI~~----------~~gi~~p~~~Qr-----Lif~Gr~LeD~~tLsdy~ 167 (577)
+.+|.++|..++. +.+++ .+..+ |.|+-+.+.|.++|.|..
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp--~dKik~~~~~lL~~kkPv~~~ktl~e~l 158 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVP--LDKIKNFRCRLLYKKKPVGDSKTLAEVL 158 (309)
T ss_dssp ----------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCC--HHHhhhhhhhheecCccCCCcCcHHHHH
Confidence 5899999999999 77776 77777 999999999999988865
No 268
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=24.66 E-value=3.1e+02 Score=22.65 Aligned_cols=57 Identities=5% Similarity=0.046 Sum_probs=36.9
Q ss_pred ceeEEeeccCCchhhhHHHHHhhCCCCCCC-CceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 116 KELEFHIDRYRNVGYLKQRIARKGKGFVDV-VDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 116 k~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~-~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
....+++....||.+|++.+.......... ....+..+|+... .+.-+++|+.|.++
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~ 76 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAII 76 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEe
Confidence 456678888899999999997765211000 1123556888764 34456778888774
No 269
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=24.66 E-value=2.4e+02 Score=31.27 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=51.9
Q ss_pred cccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEE----CCee--cCCCCcccccCCCCCCEEEEEE
Q 008120 108 ITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFC----DGEK--LDDQRLIDDICKDNDAVIHLLV 178 (577)
Q Consensus 108 I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif----~Gr~--LeD~~tLsdy~I~~~svI~Lvv 178 (577)
+.+|...| ...++++++++.+.|-.+|-.-.....++++..++- +|.. +...+++.|.|+++|..+.|-.
T Consensus 3 ~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 3 FRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred EEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 44555554 346899999999999999877765445577776664 3442 3457899999999999999876
No 270
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=24.49 E-value=30 Score=45.89 Aligned_cols=45 Identities=36% Similarity=0.552 Sum_probs=37.9
Q ss_pred hhhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCC
Q 008120 406 EEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENF 453 (577)
Q Consensus 406 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~ 453 (577)
..+....|..|+++=-|||+||||+... .|+ ++-||=|+||-...
T Consensus 1932 ~SlA~ySvigYiLglgDRH~~NIliD~~-sG~--viHiDFg~il~~~p 1976 (2105)
T COG5032 1932 RSLAVYSVIGYILGLGDRHPGNILIDRS-SGH--VIHIDFGFILFNAP 1976 (2105)
T ss_pred HHHHHHHHHHHHccCCCcCCceEEEEcC-CCc--EEEehHHHHHhcCC
Confidence 4588899999999999999999999872 355 99999999987553
No 271
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=24.02 E-value=2.4e+02 Score=24.32 Aligned_cols=44 Identities=9% Similarity=0.043 Sum_probs=36.7
Q ss_pred EEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEc
Q 008120 31 LIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFG 74 (577)
Q Consensus 31 ~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~ 74 (577)
+..|+..|.+..+.+...-|-+.|++||+....+|....-+.|-
T Consensus 2 ~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi 45 (82)
T cd06397 2 QFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYI 45 (82)
T ss_pred eEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEE
Confidence 45667888888888888889999999999999999877666663
No 272
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=23.98 E-value=1.8e+02 Score=25.68 Aligned_cols=38 Identities=18% Similarity=0.131 Sum_probs=33.1
Q ss_pred eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEc
Q 008120 36 VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFG 74 (577)
Q Consensus 36 l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~ 74 (577)
.+|.+..+.|+.+.|..+|+.++.+..++... ..|-|.
T Consensus 20 ~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~ 57 (97)
T cd06410 20 VGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQ 57 (97)
T ss_pred cCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEE
Confidence 57899999999999999999999999999866 666554
No 273
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=23.86 E-value=1.2e+02 Score=28.21 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=35.4
Q ss_pred EeCC-CCCHHHHHHHHHHh----hCCcc------ccEEEEEc-----------------Ceec--cCCCCcccccccccc
Q 008120 44 RVLE-TDSIESVKLRIQTC----KGFVV------KKQKLVFG-----------------GREL--ARNHSLVKDYGVTGG 93 (577)
Q Consensus 44 eV~~-sdTV~~LK~kI~~~----~Gip~------~~QrLif~-----------------Gk~L--~~D~~tL~dygI~dg 93 (577)
.|+. +.||.+|++.+.+. .|++| +..++++. ...| .+++.+|.++||.+.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 3776 89999998877655 44433 33444432 2455 237778888888877
Q ss_pred cccce
Q 008120 94 NVLHL 98 (577)
Q Consensus 94 stL~L 98 (577)
.-|.+
T Consensus 101 TEiSf 105 (122)
T PF10209_consen 101 TEISF 105 (122)
T ss_pred ceeee
Confidence 76654
No 274
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=23.69 E-value=62 Score=22.69 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCCHHHHhhccc
Q 008120 509 TMLLKKGVERGLSAFSIGSIMC 530 (577)
Q Consensus 509 ~~~Lk~~~~~glt~~~i~~~~~ 530 (577)
..|+++|.+.|+|..||-..+.
T Consensus 6 ~~Li~eA~~~Gls~eeir~FL~ 27 (30)
T PF08671_consen 6 VELIKEAKESGLSKEEIREFLE 27 (30)
T ss_dssp HHHHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 3588999999999999877654
No 275
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=23.54 E-value=95 Score=32.77 Aligned_cols=35 Identities=31% Similarity=0.524 Sum_probs=28.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCCcccccCCCCcEEEEEcCCCC
Q 008120 240 PKVKLSSVMWDLINSTFDGLERGNKPIRSSDGTGGTYFMQDSTGH 284 (577)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~Gs~gsyf~~~~~g~ 284 (577)
..+-+--....||+++.+||.+ +|||||.+..+|.
T Consensus 121 ~gvyLv~~~a~LvqdIi~AlNr----------TGGSyy~~G~ngg 155 (305)
T PF04639_consen 121 VGVYLVFSAATLVQDIIDALNR----------TGGSYYYRGNNGG 155 (305)
T ss_pred eEEEEEEEHHHHHHHHHHHHHh----------CCCeeEEEccCCC
Confidence 3444556778999999999987 8999999987764
No 276
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=23.33 E-value=3.5e+02 Score=22.62 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred EEE-EeC---CeEEEEEeCCCCCHHHHHHHHHHhhCCc--cccEEEE--E-cC--eeccCCCCccc
Q 008120 32 IYL-SVS---GSLVPMRVLETDSIESVKLRIQTCKGFV--VKKQKLV--F-GG--RELARNHSLVK 86 (577)
Q Consensus 32 I~V-tl~---G~~~~leV~~sdTV~~LK~kI~~~~Gip--~~~QrLi--f-~G--k~L~~D~~tL~ 86 (577)
|.| ..+ +...++.|+.++|..++-..+.++.++. +..-.|+ . +| +.|.+++..+.
T Consensus 5 lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~Pl~ 70 (90)
T smart00314 5 LRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENPLQ 70 (90)
T ss_pred EEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcceE
No 277
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=23.13 E-value=2.5e+02 Score=23.17 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=31.4
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcC
Q 008120 37 SGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGG 75 (577)
Q Consensus 37 ~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~G 75 (577)
+|+...+.|.|+.||.++-.++-++.|+.++.-.++..|
T Consensus 9 ~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 9 NGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp TTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 678899999999999999999999999998877766544
No 278
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=22.05 E-value=1.9e+02 Score=25.12 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=43.7
Q ss_pred cccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEEC------CeecCCCCcccccC
Q 008120 108 ITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCD------GEKLDDQRLIDDIC 167 (577)
Q Consensus 108 I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~------Gr~LeD~~tLsdy~ 167 (577)
|.|-..+|....+.|+...|+.++=+.+..+.... +.....|+=. -|.++|+..+-++.
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~-~~~~W~LvE~~P~l~lER~~EDHE~vvdvl 69 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQ-DDSSWTLVEHLPHLQLERLFEDHELVVEVL 69 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCC-CCCCeEEEEecchhhhhhhccchHHHHHHH
Confidence 45556789999999999999999999999998865 3455555521 35677776665553
No 279
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=21.87 E-value=3.5e+02 Score=22.60 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=37.5
Q ss_pred ceeEEeeccCCchhhhHHHHHhhCCCCC----C-----CCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 116 KELEFHIDRYRNVGYLKQRIARKGKGFV----D-----VVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 116 k~~~i~Vd~~~TV~~LK~kI~~~~gi~~----p-----~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
.+..++++ ..||.+|.+.+.++..... + -....+..+|+....... .-+++|+.|.++
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~ 82 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIF 82 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEe
Confidence 35677776 8899999999988754100 0 023456668877654321 457788888875
No 280
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=21.49 E-value=1e+02 Score=21.61 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 008120 485 QDIELLKFYGWNIPLECARTLRISTMLLKKGVE 517 (577)
Q Consensus 485 ~d~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~ 517 (577)
+.++.|...|++ .++|.+.|+.+-..+.+|+.
T Consensus 3 ~~v~~L~~mGf~-~~~~~~AL~~~~~d~~~A~~ 34 (38)
T cd00194 3 EKLEQLLEMGFS-REEARKALRATNNNVERAVE 34 (38)
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHhCCCHHHHHH
Confidence 456677778988 78999999999888888764
No 281
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=21.24 E-value=4.6e+02 Score=23.38 Aligned_cols=37 Identities=5% Similarity=0.047 Sum_probs=31.7
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCcc
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVV 66 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~ 66 (577)
.-|.| +.++.-.++.+..+.||++|-..++.+..++.
T Consensus 3 y~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~ 40 (97)
T cd01775 3 YCIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPS 40 (97)
T ss_pred eEEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCC
Confidence 34667 67778889999999999999999999988766
No 282
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=21.18 E-value=1.4e+02 Score=25.64 Aligned_cols=37 Identities=8% Similarity=0.030 Sum_probs=31.6
Q ss_pred ceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECC
Q 008120 116 KELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDG 154 (577)
Q Consensus 116 k~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~G 154 (577)
-++.+.+.+..+..+|..+|++++..+ ++.-+|.|.-
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~--~~~~~LSY~~ 43 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQ--AQRGQLSYRA 43 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCC--hhhcEEEecC
Confidence 355678999999999999999999976 7888888854
No 283
>PRK01777 hypothetical protein; Validated
Probab=21.17 E-value=3.8e+02 Score=23.54 Aligned_cols=65 Identities=14% Similarity=0.146 Sum_probs=42.4
Q ss_pred CcEEEEE--EeCC--eEEEEEeCCCCCHHHHHHHHHHhhCCccc--c-----EEEEEcCeeccCCCCccccccccccccc
Q 008120 28 ESILIYL--SVSG--SLVPMRVLETDSIESVKLRIQTCKGFVVK--K-----QKLVFGGRELARNHSLVKDYGVTGGNVL 96 (577)
Q Consensus 28 ~sM~I~V--tl~G--~~~~leV~~sdTV~~LK~kI~~~~Gip~~--~-----QrLif~Gk~L~~D~~tL~dygI~dgstL 96 (577)
+.|+|.| .... ....+++.++.||.++-.. .||+.. + -.+.-+|+... - |+-+++|++|
T Consensus 2 ~~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~----sgi~~~~pei~~~~~~vgI~Gk~v~-~-----d~~L~dGDRV 71 (95)
T PRK01777 2 GKIRVEVVYALPERQYLQRLTLQEGATVEEAIRA----SGLLELRTDIDLAKNKVGIYSRPAK-L-----TDVLRDGDRV 71 (95)
T ss_pred CeeEEEEEEECCCceEEEEEEcCCCCcHHHHHHH----cCCCccCcccccccceEEEeCeECC-C-----CCcCCCCCEE
Confidence 3688888 2333 4578899999999997765 465544 1 24445666555 3 4566779988
Q ss_pred ceeeee
Q 008120 97 HLVLKL 102 (577)
Q Consensus 97 ~LvlrL 102 (577)
.+.-.|
T Consensus 72 eIyrPL 77 (95)
T PRK01777 72 EIYRPL 77 (95)
T ss_pred EEecCC
Confidence 765443
No 284
>KOG4261 consensus Talin [Cytoskeleton]
Probab=21.14 E-value=2.2e+02 Score=34.17 Aligned_cols=124 Identities=14% Similarity=0.078 Sum_probs=87.9
Q ss_pred EEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhC---CccccEEEEEc------CeeccCCCCcccccccccccccceeee
Q 008120 31 LIYLSVSGSLVPMRVLETDSIESVKLRIQTCKG---FVVKKQKLVFG------GRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 31 ~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~G---ip~~~QrLif~------Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
.+.|...+-..+|...|+.+|.+-=.-|.++.- .-+.+..|+.. |--|+ ...+|.+|-+.++++|.-.
T Consensus 5 sl~i~~~~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle-~grt~~~y~~~n~d~~ey~-- 81 (1003)
T KOG4261|consen 5 SLKISSANVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLE-AGRTLDYYMLRNGDTLEYK-- 81 (1003)
T ss_pred EEEEEecceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeec-CCccHHHHHHhcccccchh--
Confidence 445544466788999999999876555554421 11444444432 66777 8888999998888887643
Q ss_pred eccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCC
Q 008120 102 LSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDD 159 (577)
Q Consensus 102 Lsd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD 159 (577)
.......|+.++|-.-++-|+.+.+|.+|---|..+.||. ..++..|+-....+++
T Consensus 82 -~k~r~lkvrmldg~vkti~vd~sq~v~~L~~~ic~~igIt-nyeeyslvre~~~~~~ 137 (1003)
T KOG4261|consen 82 -RKQRPLKVRMLDGAVKTIMVDDSQPVSQLMMTICNKIGIT-NYEEYSLVREDIEEQN 137 (1003)
T ss_pred -hhcccceeeecccccceeeecccccHHHHHHHHHhccCcc-chhhhhhhHHHHHHhc
Confidence 3345778999999999999999999999999999999875 3455555554444443
No 285
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=20.04 E-value=2.1e+02 Score=34.39 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=57.1
Q ss_pred CCCceeEEeeccC-CchhhhHHHHHhhCCCCCCCCceEEEE-CCeecCCCCcccccC--CCCCCEEEEEEecCCCccCCc
Q 008120 113 SCGKELEFHIDRY-RNVGYLKQRIARKGKGFVDVVDQEIFC-DGEKLDDQRLIDDIC--KDNDAVIHLLVQKSAKVRAKP 188 (577)
Q Consensus 113 ~~Gk~~~i~Vd~~-~TV~~LK~kI~~~~gi~~p~~~QrLif-~Gr~LeD~~tLsdy~--I~~~svI~Lvvrks~k~~~~p 188 (577)
..|..++|+.+.. .|+..||..|+++.|+. +.+|.++- +|.-+.-.+.+..|+ =.+-+.|+++-++...-...+
T Consensus 2 drGqaltFDleaetqT~adLk~aiqke~~~a--Iq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFnkem~lcde~~ 79 (1424)
T KOG4572|consen 2 DRGQALTFDLEAETQTFADLKDAIQKEVGHA--IQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFNKEMGLCDENH 79 (1424)
T ss_pred CCCceeEEeecceeehHHHHHHHHHHHhchh--hceeeeeecCCcCcccccchhhhccccCCCCceEEeehhhccccCCC
Confidence 3578888887764 89999999999999976 77777664 666777778888887 256678888755554433344
Q ss_pred ccccce
Q 008120 189 VEKDFE 194 (577)
Q Consensus 189 ~~kd~e 194 (577)
.+-|+.
T Consensus 80 a~pdtT 85 (1424)
T KOG4572|consen 80 AGPDTT 85 (1424)
T ss_pred CCCCce
Confidence 444443
Done!