Query 008120
Match_columns 577
No_of_seqs 454 out of 2277
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 18:36:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u30_A Ubiquitin, linear DI-ub 100.0 4E-32 1.4E-36 258.2 16.2 154 23-179 14-168 (172)
2 3rt3_B Ubiquitin-like protein 100.0 2.4E-31 8.2E-36 249.2 17.3 149 29-180 2-154 (159)
3 3b08_A Polyubiquitin-C, ubiqui 100.0 1.8E-29 6.2E-34 233.0 17.3 149 30-181 1-150 (152)
4 2kdi_A Ubiquitin, vacuolar pro 99.7 3.5E-18 1.2E-22 152.5 5.1 103 27-130 7-113 (114)
5 3phx_B Ubiquitin-like protein 99.7 1.4E-16 4.8E-21 131.8 9.0 76 28-104 3-79 (79)
6 4eew_A Large proline-rich prot 99.7 1.3E-16 4.5E-21 134.8 7.6 88 89-179 1-88 (88)
7 3dbh_I NEDD8; cell cycle, acti 99.6 3.1E-16 1.1E-20 131.9 8.8 82 23-105 6-88 (88)
8 3v6c_B Ubiquitin; structural g 99.6 4.1E-16 1.4E-20 132.8 9.0 78 25-103 13-91 (91)
9 1yx5_B Ubiquitin; proteasome, 99.6 3.7E-16 1.3E-20 134.9 8.8 91 30-121 1-92 (98)
10 4fbj_B NEDD8; effector-HOST ta 99.6 4.2E-16 1.4E-20 132.3 8.1 77 30-107 1-78 (88)
11 3plu_A Ubiquitin-like modifier 99.6 5.3E-16 1.8E-20 133.2 8.0 72 27-99 19-91 (93)
12 4hcn_B Polyubiquitin, ubiquiti 99.6 6.6E-16 2.2E-20 133.7 8.2 82 23-105 16-98 (98)
13 2uyz_B Small ubiquitin-related 99.6 1.1E-15 3.6E-20 126.5 7.0 77 28-105 2-79 (79)
14 3plu_A Ubiquitin-like modifier 99.6 1.4E-15 4.6E-20 130.7 7.8 78 98-177 14-91 (93)
15 2kk8_A Uncharacterized protein 99.6 1.8E-15 6E-20 127.8 8.4 75 27-102 8-84 (84)
16 3phx_B Ubiquitin-like protein 99.6 2E-15 6.8E-20 124.8 8.4 75 103-179 2-76 (79)
17 2kan_A Uncharacterized protein 99.6 2.4E-15 8.1E-20 129.6 9.2 82 22-105 8-91 (94)
18 1ndd_A NEDD8, protein (ubiquit 99.6 2.2E-15 7.5E-20 122.6 8.2 75 30-105 1-76 (76)
19 4dwf_A HLA-B-associated transc 99.6 2.7E-15 9.4E-20 127.1 9.1 77 27-105 3-80 (90)
20 2dzi_A Ubiquitin-like protein 99.6 3.9E-15 1.3E-19 123.0 9.6 76 26-102 4-80 (81)
21 1wh3_A 59 kDa 2'-5'-oligoadeny 99.6 3.4E-15 1.2E-19 125.5 9.2 79 27-106 5-84 (87)
22 3n3k_B Ubiquitin; hydrolase, p 99.6 1.8E-15 6.1E-20 126.2 7.4 77 28-105 2-79 (85)
23 3mtn_B UBA80, ubcep1, ubiquiti 99.6 3.1E-15 1E-19 124.6 8.3 77 28-105 2-79 (85)
24 2faz_A Ubiquitin-like containi 99.6 3.6E-15 1.2E-19 122.8 8.5 75 28-103 1-78 (78)
25 3a9j_A Ubiquitin; protein comp 99.6 4.4E-15 1.5E-19 120.8 8.7 75 30-105 1-76 (76)
26 3k9o_B Ubiquitin, UBB+1; E2-25 99.6 3.8E-15 1.3E-19 127.6 8.8 79 29-108 1-80 (96)
27 1wyw_B Ubiquitin-like protein 99.6 2.2E-15 7.6E-20 130.3 7.3 79 26-105 18-97 (97)
28 2l7r_A Ubiquitin-like protein 99.6 2.4E-15 8.3E-20 129.0 7.2 82 22-105 12-93 (93)
29 1wy8_A NP95-like ring finger p 99.6 5.5E-15 1.9E-19 124.9 9.2 80 26-106 4-86 (89)
30 4eew_A Large proline-rich prot 99.6 4.9E-15 1.7E-19 125.0 8.8 73 27-101 15-88 (88)
31 3l0w_B Monoubiquitinated proli 99.6 4E-15 1.4E-19 141.4 9.1 124 30-159 1-128 (169)
32 1sif_A Ubiquitin; hydrophobic 99.6 4.2E-15 1.4E-19 126.1 8.0 78 27-105 7-85 (88)
33 2hj8_A Interferon-induced 17 k 99.6 2.9E-15 1E-19 127.0 6.8 78 28-106 3-81 (88)
34 3vdz_A Ubiquitin-40S ribosomal 99.6 6.4E-15 2.2E-19 130.6 8.9 78 27-105 33-111 (111)
35 2faz_A Ubiquitin-like containi 99.6 6.2E-15 2.1E-19 121.4 8.2 76 104-181 1-78 (78)
36 1v2y_A 3300001G02RIK protein; 99.6 2.6E-15 8.9E-20 132.2 6.0 80 26-105 4-99 (105)
37 3m62_B UV excision repair prot 99.6 4.9E-15 1.7E-19 130.3 7.5 79 106-186 2-80 (106)
38 1uh6_A Ubiquitin-like 5; beta- 99.5 4.9E-15 1.7E-19 129.2 7.1 73 27-100 26-99 (100)
39 4dwf_A HLA-B-associated transc 99.5 7.2E-15 2.4E-19 124.5 7.8 79 104-185 4-82 (90)
40 4a20_A Ubiquitin-like protein 99.5 9.2E-15 3.2E-19 127.1 8.3 77 103-181 17-97 (98)
41 3q3f_A Ribonuclease/ubiquitin 99.5 5.8E-15 2E-19 142.7 7.5 83 29-112 105-188 (189)
42 2wyq_A HHR23A, UV excision rep 99.5 1.4E-14 4.8E-19 121.0 8.9 78 103-182 3-83 (85)
43 3m63_B Ubiquitin domain-contai 99.5 2.9E-15 1E-19 130.7 4.6 94 82-180 7-100 (101)
44 2lxa_A Ubiquitin-like protein 99.5 4.9E-15 1.7E-19 126.1 5.5 72 30-102 2-78 (87)
45 2wyq_A HHR23A, UV excision rep 99.5 2.3E-14 7.9E-19 119.7 9.4 76 27-103 3-82 (85)
46 2kk8_A Uncharacterized protein 99.5 8.7E-15 3E-19 123.5 6.8 74 104-179 9-83 (84)
47 1uel_A HHR23B, UV excision rep 99.5 2.6E-14 8.7E-19 123.0 9.7 79 106-186 1-82 (95)
48 4fbj_B NEDD8; effector-HOST ta 99.5 1.1E-14 3.8E-19 123.5 7.3 73 106-180 1-73 (88)
49 2lxa_A Ubiquitin-like protein 99.5 9.3E-15 3.2E-19 124.4 6.6 73 106-180 2-78 (87)
50 4a20_A Ubiquitin-like protein 99.5 1.9E-14 6.4E-19 125.2 8.5 76 26-102 16-96 (98)
51 1j8c_A Ubiquitin-like protein 99.5 7.3E-14 2.5E-18 126.5 12.5 78 27-105 30-107 (125)
52 1wgh_A Ubiquitin-like 3, HCG-1 99.5 3.7E-14 1.3E-18 126.9 10.4 80 102-181 13-100 (116)
53 3v6c_B Ubiquitin; structural g 99.5 1.7E-14 6E-19 122.7 7.8 75 103-179 15-89 (91)
54 3rt3_B Ubiquitin-like protein 99.5 2.3E-14 7.9E-19 133.7 9.2 79 27-106 79-158 (159)
55 3b1l_X E3 ubiquitin-protein li 99.3 1E-15 3.6E-20 125.3 0.0 74 30-104 1-75 (76)
56 1wgd_A Homocysteine-responsive 99.5 1.4E-14 4.9E-19 123.9 6.9 78 27-105 5-89 (93)
57 1ttn_A DC-UBP, dendritic cell- 99.5 2E-14 7E-19 126.2 7.8 81 23-104 17-98 (106)
58 1uh6_A Ubiquitin-like 5; beta- 99.5 1.3E-14 4.6E-19 126.4 6.4 70 106-177 29-98 (100)
59 1yqb_A Ubiquilin 3; structural 99.5 4E-14 1.4E-18 123.3 8.7 81 23-105 16-97 (100)
60 2bwf_A Ubiquitin-like protein 99.5 7.2E-14 2.5E-18 114.3 9.7 72 29-101 4-75 (77)
61 3m62_B UV excision repair prot 99.5 1.7E-14 5.9E-19 126.8 6.3 73 30-103 2-75 (106)
62 1ndd_A NEDD8, protein (ubiquit 99.5 4.5E-14 1.5E-18 114.7 8.2 73 106-180 1-73 (76)
63 2uyz_B Small ubiquitin-related 99.5 2.6E-14 9.1E-19 118.0 6.9 74 105-180 3-76 (79)
64 1wgh_A Ubiquitin-like 3, HCG-1 99.5 7.2E-14 2.5E-18 125.0 10.1 77 26-103 13-100 (116)
65 3dbh_I NEDD8; cell cycle, acti 99.5 2.5E-14 8.6E-19 120.1 6.6 75 104-180 11-85 (88)
66 2fnj_B Transcription elongatio 99.5 3.9E-14 1.3E-18 126.9 8.2 74 30-105 1-83 (118)
67 1uel_A HHR23B, UV excision rep 99.5 5.5E-14 1.9E-18 120.9 8.7 73 30-103 1-77 (95)
68 3k9o_B Ubiquitin, UBB+1; E2-25 99.5 4.3E-14 1.5E-18 121.0 8.0 75 105-181 1-75 (96)
69 1wx8_A Riken cDNA 4931431F19; 99.5 2.6E-14 8.7E-19 122.8 6.5 78 27-105 15-92 (96)
70 2hj8_A Interferon-induced 17 k 99.5 2.7E-14 9.4E-19 121.0 6.5 76 104-181 3-78 (88)
71 4ajy_B Transcription elongatio 99.5 5.6E-14 1.9E-18 125.6 8.5 74 30-104 1-83 (118)
72 2ojr_A Ubiquitin; lanthide-bin 99.5 7.4E-14 2.5E-18 123.6 8.9 78 27-105 33-111 (111)
73 1we6_A Splicing factor, putati 99.5 3.7E-14 1.3E-18 125.4 6.9 78 27-105 25-107 (111)
74 1wyw_B Ubiquitin-like protein 99.5 5.4E-14 1.8E-18 121.5 7.6 77 102-180 18-94 (97)
75 3n3k_B Ubiquitin; hydrolase, p 99.5 5.6E-14 1.9E-18 117.1 7.5 74 105-180 3-76 (85)
76 1wh3_A 59 kDa 2'-5'-oligoadeny 99.5 8E-14 2.7E-18 117.1 8.4 75 104-180 6-80 (87)
77 2dzi_A Ubiquitin-like protein 99.5 6.1E-14 2.1E-18 115.8 7.5 75 104-180 6-80 (81)
78 1sif_A Ubiquitin; hydrophobic 99.5 5.5E-14 1.9E-18 119.2 7.4 75 104-180 8-82 (88)
79 3a9j_A Ubiquitin; protein comp 99.5 8.1E-14 2.8E-18 113.2 8.1 73 106-180 1-73 (76)
80 2klc_A Ubiquilin-1; ubiquitin- 99.5 1.3E-13 4.6E-18 120.0 10.0 77 27-104 23-99 (101)
81 1v5o_A 1700011N24RIK protein; 99.5 7.6E-14 2.6E-18 121.7 8.3 79 27-105 5-88 (102)
82 1wy8_A NP95-like ring finger p 99.5 1.1E-13 3.7E-18 116.8 9.0 76 104-181 6-83 (89)
83 4hcn_B Polyubiquitin, ubiquiti 99.5 5.1E-14 1.7E-18 121.8 7.0 76 103-180 20-95 (98)
84 1se9_A Ubiquitin family; ubiqu 99.5 1.1E-13 3.7E-18 125.4 8.8 78 27-105 14-106 (126)
85 3mtn_B UBA80, ubcep1, ubiquiti 99.5 9E-14 3.1E-18 115.7 7.6 74 105-180 3-76 (85)
86 1ttn_A DC-UBP, dendritic cell- 99.5 8.6E-14 2.9E-18 122.1 7.6 79 103-183 21-99 (106)
87 1se9_A Ubiquitin family; ubiqu 99.4 1.1E-13 3.9E-18 125.3 8.0 80 101-180 12-103 (126)
88 2gow_A HCG-1 protein, ubiquiti 99.4 1.1E-13 3.9E-18 125.3 8.0 78 27-105 15-103 (125)
89 1wx7_A Ubiquilin 3; ubiquitin- 99.4 1.8E-13 6.1E-18 120.0 8.8 77 27-105 15-92 (106)
90 2bwf_A Ubiquitin-like protein 99.4 1.8E-13 6.1E-18 111.9 8.1 71 106-179 5-75 (77)
91 3u5e_m 60S ribosomal protein L 99.4 8.2E-15 2.8E-19 133.0 0.0 76 30-106 1-77 (128)
92 1wju_A NEDD8 ultimate buster-1 99.4 4.6E-14 1.6E-18 123.0 4.8 74 29-104 17-93 (100)
93 2kan_A Uncharacterized protein 99.4 1.8E-13 6.3E-18 117.7 8.4 77 102-181 12-89 (94)
94 1wgd_A Homocysteine-responsive 99.4 1.5E-13 5.1E-18 117.5 7.8 75 104-180 6-86 (93)
95 3u30_A Ubiquitin, linear DI-ub 99.4 1.5E-13 5.3E-18 130.0 8.4 78 27-105 94-172 (172)
96 1wgg_A Ubiquitin carboxyl-term 99.4 1.7E-13 5.9E-18 118.4 7.8 75 27-103 5-80 (96)
97 1v5t_A 8430435I17RIK protein; 99.4 1.4E-13 4.9E-18 117.3 7.1 76 27-103 5-84 (90)
98 4dbg_A Ranbp-type and C3HC4-ty 99.4 3.9E-13 1.3E-17 118.2 9.5 74 27-101 22-99 (105)
99 1yqb_A Ubiquilin 3; structural 99.4 2.4E-13 8.1E-18 118.3 7.8 80 101-183 18-97 (100)
100 3vdz_A Ubiquitin-40S ribosomal 99.4 2.7E-13 9.3E-18 120.1 8.2 75 104-180 34-108 (111)
101 1yx5_B Ubiquitin; proteasome, 99.4 3.8E-13 1.3E-17 115.9 9.0 74 106-181 1-74 (98)
102 3b1l_X E3 ubiquitin-protein li 99.1 1.5E-14 5E-19 118.4 0.0 73 106-180 1-73 (76)
103 2gow_A HCG-1 protein, ubiquiti 99.4 2.6E-13 8.7E-18 123.0 8.1 79 103-181 15-101 (125)
104 1wju_A NEDD8 ultimate buster-1 99.4 2.6E-13 8.9E-18 118.3 7.8 65 115-181 29-93 (100)
105 2kd0_A LRR repeats and ubiquit 99.4 5.1E-13 1.7E-17 112.7 9.3 75 26-101 9-83 (85)
106 2l7r_A Ubiquitin-like protein 99.4 1.6E-13 5.6E-18 117.6 6.3 74 102-179 16-89 (93)
107 1wxv_A BAG-family molecular ch 99.4 4.1E-13 1.4E-17 114.4 8.7 76 27-102 5-85 (92)
108 1we7_A SF3A1 protein; structur 99.4 3.7E-13 1.3E-17 119.8 8.6 79 27-106 23-112 (115)
109 2ojr_A Ubiquitin; lanthide-bin 99.4 4.6E-13 1.6E-17 118.5 9.1 75 104-180 34-108 (111)
110 2klc_A Ubiquilin-1; ubiquitin- 99.4 4.4E-13 1.5E-17 116.8 8.7 78 102-182 22-99 (101)
111 3u5c_f 40S ribosomal protein S 99.4 1.9E-14 6.5E-19 134.6 0.0 76 30-106 1-77 (152)
112 4ajy_B Transcription elongatio 99.4 2E-13 6.8E-18 122.1 6.5 73 106-180 1-81 (118)
113 2kdb_A Homocysteine-responsive 99.4 1.6E-13 5.6E-18 119.5 5.8 73 104-177 22-99 (99)
114 1v2y_A 3300001G02RIK protein; 99.4 8.2E-14 2.8E-18 122.6 3.9 77 105-183 7-99 (105)
115 1wia_A Hypothetical ubiquitin- 99.4 3.8E-13 1.3E-17 115.3 7.6 78 104-186 6-84 (95)
116 3b08_A Polyubiquitin-C, ubiqui 99.4 7.3E-13 2.5E-17 121.6 9.7 78 27-105 74-152 (152)
117 2fnj_B Transcription elongatio 99.4 2.2E-13 7.5E-18 122.0 5.9 72 106-179 1-80 (118)
118 2kdb_A Homocysteine-responsive 99.4 2.1E-13 7.1E-18 118.8 5.5 73 26-99 20-99 (99)
119 3l0w_B Monoubiquitinated proli 99.4 4.9E-13 1.7E-17 127.0 8.4 73 106-180 1-73 (169)
120 1we6_A Splicing factor, putati 99.4 5.5E-13 1.9E-17 117.9 8.1 76 102-179 24-103 (111)
121 1wia_A Hypothetical ubiquitin- 99.4 6E-13 2E-17 114.1 8.1 75 26-104 4-80 (95)
122 1wx7_A Ubiquilin 3; ubiquitin- 99.4 6.7E-13 2.3E-17 116.3 7.9 77 103-182 15-91 (106)
123 1wx8_A Riken cDNA 4931431F19; 99.4 3.3E-13 1.1E-17 115.8 5.5 75 104-181 16-90 (96)
124 1v86_A DNA segment, CHR 7, way 99.4 5.6E-13 1.9E-17 114.9 6.8 75 26-102 14-88 (95)
125 3m63_B Ubiquitin domain-contai 99.4 1.9E-13 6.4E-18 119.2 3.6 71 30-101 29-99 (101)
126 1j8c_A Ubiquitin-like protein 99.4 9.4E-13 3.2E-17 119.2 7.9 76 104-182 31-106 (125)
127 2kjr_A CG11242; UBL, ubiquitin 99.4 2E-12 6.9E-17 111.7 9.6 78 22-99 8-93 (95)
128 2dzm_A FAS-associated factor 1 99.4 6.7E-13 2.3E-17 115.8 6.6 74 27-102 6-82 (100)
129 2kdi_A Ubiquitin, vacuolar pro 99.3 1.5E-12 5.2E-17 115.9 8.5 78 103-182 7-84 (114)
130 1v5o_A 1700011N24RIK protein; 99.3 9.1E-13 3.1E-17 114.8 6.6 78 104-183 6-88 (102)
131 1x1m_A Ubiquitin-like protein 99.3 1.6E-12 5.6E-17 114.2 8.2 75 105-181 12-101 (107)
132 4dbg_A Ranbp-type and C3HC4-ty 99.3 2.1E-12 7.1E-17 113.5 8.1 72 106-179 25-99 (105)
133 2daf_A FLJ35834 protein; hypot 99.3 3.3E-12 1.1E-16 113.8 9.1 91 26-117 12-104 (118)
134 3q3f_A Ribonuclease/ubiquitin 99.3 1.2E-12 4E-17 126.6 6.6 74 105-180 105-178 (189)
135 3u5e_m 60S ribosomal protein L 99.3 1.5E-13 5.3E-18 124.6 0.0 73 106-180 1-73 (128)
136 4b6w_A Tubulin-specific chaper 99.3 3.1E-12 1.1E-16 108.5 7.8 71 30-101 3-83 (86)
137 1x1m_A Ubiquitin-like protein 99.3 2E-12 6.8E-17 113.7 6.4 76 27-103 10-101 (107)
138 1we7_A SF3A1 protein; structur 99.3 4.2E-12 1.4E-16 112.9 8.5 65 113-179 43-107 (115)
139 1wgg_A Ubiquitin carboxyl-term 99.3 2.3E-12 7.9E-17 111.3 6.5 81 105-190 7-88 (96)
140 2kj6_A Tubulin folding cofacto 99.3 4.8E-12 1.6E-16 109.8 8.2 76 25-100 10-94 (97)
141 2kd0_A LRR repeats and ubiquit 99.3 3.5E-12 1.2E-16 107.6 7.0 71 107-179 13-83 (85)
142 2xzm_9 RPS31E; ribosome, trans 99.3 3.6E-13 1.2E-17 129.8 0.0 71 30-106 1-72 (189)
143 3u5c_f 40S ribosomal protein S 99.3 4E-13 1.4E-17 125.7 0.0 72 106-179 1-72 (152)
144 1wxv_A BAG-family molecular ch 99.3 8.1E-12 2.8E-16 106.4 7.6 76 104-182 6-87 (92)
145 1v5t_A 8430435I17RIK protein; 99.2 8.6E-12 2.9E-16 106.2 7.1 72 105-179 7-82 (90)
146 2dzj_A Synaptic glycoprotein S 99.2 6.9E-12 2.4E-16 106.8 6.5 71 27-98 8-85 (88)
147 3ai5_A Yeast enhanced green fl 99.2 8.9E-12 3E-16 128.6 8.6 76 27-103 231-307 (307)
148 2daf_A FLJ35834 protein; hypot 99.2 1.2E-11 4.2E-16 110.1 7.9 73 106-180 16-89 (118)
149 4b6w_A Tubulin-specific chaper 99.2 2E-11 6.9E-16 103.5 7.4 68 112-181 11-85 (86)
150 1oqy_A HHR23A, UV excision rep 99.2 1.3E-11 4.6E-16 130.4 6.9 79 25-104 3-86 (368)
151 2dzj_A Synaptic glycoprotein S 99.2 1.5E-11 5.3E-16 104.6 5.2 69 106-176 11-85 (88)
152 1v6e_A Cytoskeleton-associated 99.2 4E-11 1.4E-15 103.1 7.6 73 28-100 6-86 (95)
153 2dzm_A FAS-associated factor 1 99.2 1.7E-11 5.7E-16 107.0 5.2 74 105-181 8-83 (100)
154 2io1_B Small ubiquitin-related 99.2 4.5E-11 1.5E-15 103.0 7.8 80 25-105 3-83 (94)
155 1oqy_A HHR23A, UV excision rep 99.2 3.1E-11 1E-15 127.7 7.7 76 104-181 6-84 (368)
156 1wf9_A NPL4 family protein; be 99.1 2.8E-11 9.6E-16 106.4 5.6 74 27-101 5-94 (107)
157 1v86_A DNA segment, CHR 7, way 99.1 1.2E-11 4.2E-16 106.4 3.2 72 105-180 17-88 (95)
158 1t0y_A Tubulin folding cofacto 99.1 7E-11 2.4E-15 106.3 8.1 73 28-100 5-85 (122)
159 3ai5_A Yeast enhanced green fl 99.1 5.4E-11 1.8E-15 122.8 8.2 76 102-179 230-305 (307)
160 2kjr_A CG11242; UBL, ubiquitin 99.1 5.9E-11 2E-15 102.5 6.9 73 103-177 13-93 (95)
161 2xzm_9 RPS31E; ribosome, trans 99.1 4.8E-12 1.6E-16 122.0 0.0 67 106-179 1-67 (189)
162 3shq_A UBLCP1; phosphatase, hy 99.0 1.8E-10 6.3E-15 119.7 6.8 77 27-104 3-82 (320)
163 2kj6_A Tubulin folding cofacto 99.0 2.1E-10 7.3E-15 99.4 5.9 71 107-179 16-95 (97)
164 1wf9_A NPL4 family protein; be 99.0 1.4E-10 4.9E-15 101.9 4.5 71 106-179 8-94 (107)
165 2io0_B Small ubiquitin-related 99.0 7.3E-10 2.5E-14 94.9 7.6 79 27-106 3-82 (91)
166 1v6e_A Cytoskeleton-associated 99.0 6.1E-10 2.1E-14 95.6 6.6 73 106-180 8-88 (95)
167 2d07_B Ubiquitin-like protein 99.0 1.4E-09 4.7E-14 93.4 8.3 79 26-105 14-93 (93)
168 2io1_B Small ubiquitin-related 99.0 1.4E-09 4.7E-14 93.7 8.2 75 104-180 6-80 (94)
169 2eke_C Ubiquitin-like protein 98.9 3.9E-09 1.3E-13 92.9 10.0 79 25-105 27-106 (106)
170 2kzr_A Ubiquitin thioesterase 98.9 1E-09 3.5E-14 92.4 5.8 71 30-101 1-77 (86)
171 1t0y_A Tubulin folding cofacto 98.9 1.8E-09 6E-14 97.1 7.4 77 104-182 5-89 (122)
172 1wz0_A Ubiquitin-like protein 98.9 2E-09 7E-14 94.4 7.1 79 26-105 21-100 (104)
173 3a4r_A Nfatc2-interacting prot 98.9 3.4E-09 1.2E-13 88.3 8.0 74 25-99 3-78 (79)
174 1wm3_A Ubiquitin-like protein 98.9 2.7E-09 9.1E-14 87.2 7.2 69 30-99 2-71 (72)
175 2k8h_A Small ubiquitin protein 98.9 3E-09 1E-13 94.2 7.3 80 26-106 23-103 (110)
176 2kzr_A Ubiquitin thioesterase 98.8 1.9E-09 6.3E-14 90.8 4.9 70 106-178 1-76 (86)
177 1wm3_A Ubiquitin-like protein 98.8 6.8E-09 2.3E-13 84.7 7.4 70 106-177 2-71 (72)
178 2io0_B Small ubiquitin-related 98.8 1E-08 3.6E-13 87.7 8.9 76 104-181 4-79 (91)
179 1wjn_A Tubulin-folding protein 98.8 5.5E-09 1.9E-13 89.9 7.0 75 27-101 7-92 (97)
180 3shq_A UBLCP1; phosphatase, hy 98.8 3.1E-09 1.1E-13 110.5 5.0 73 106-181 6-81 (320)
181 3a4r_A Nfatc2-interacting prot 98.7 2.2E-08 7.6E-13 83.3 7.5 73 103-177 5-78 (79)
182 2d07_B Ubiquitin-like protein 98.7 2.5E-08 8.7E-13 85.5 7.7 76 103-180 15-90 (93)
183 2eke_C Ubiquitin-like protein 98.6 6.6E-08 2.3E-12 85.1 7.7 75 103-180 29-103 (106)
184 1wz0_A Ubiquitin-like protein 98.6 3.4E-08 1.2E-12 86.6 5.8 76 103-180 22-97 (104)
185 1wjn_A Tubulin-folding protein 98.5 1.6E-07 5.4E-12 80.7 7.7 66 113-180 20-93 (97)
186 2k8h_A Small ubiquitin protein 98.5 4.4E-08 1.5E-12 86.7 4.3 77 103-181 24-100 (110)
187 3pge_A SUMO-modified prolifera 98.4 1.1E-06 3.8E-11 85.3 9.4 80 26-106 26-105 (200)
188 3tix_A Ubiquitin-like protein 98.3 9.7E-07 3.3E-11 84.8 7.2 80 27-107 55-134 (207)
189 3kyd_D Small ubiquitin-related 98.2 1.9E-06 6.6E-11 76.7 7.7 75 27-102 38-113 (115)
190 3kyd_D Small ubiquitin-related 98.2 5.4E-06 1.8E-10 73.8 8.5 75 104-180 39-113 (115)
191 1cja_A Protein (actin-fragmin 98.1 2.1E-06 7.1E-11 89.4 6.3 139 266-452 75-239 (342)
192 3v7o_A Minor nucleoprotein VP3 98.0 7.9E-07 2.7E-11 86.5 -0.1 80 26-106 18-97 (227)
193 4efo_A Serine/threonine-protei 97.9 1.8E-05 6.1E-10 68.0 6.7 50 30-79 13-64 (94)
194 2pjh_A Protein NPL4, nuclear p 97.9 8.4E-06 2.9E-10 67.9 3.7 71 28-99 3-78 (80)
195 3pge_A SUMO-modified prolifera 97.8 3.2E-05 1.1E-09 75.2 7.6 77 103-182 27-103 (200)
196 3ivf_A Talin-1; FERM domain, c 97.7 0.0011 3.8E-08 69.5 17.8 120 29-153 3-132 (371)
197 3tix_A Ubiquitin-like protein 97.7 4.6E-05 1.6E-09 73.2 6.2 77 103-182 55-131 (207)
198 2pjh_A Protein NPL4, nuclear p 97.6 3E-05 1E-09 64.6 3.5 69 105-176 4-77 (80)
199 3uf8_A Ubiquitin-like protein 97.5 0.00025 8.5E-09 69.2 9.5 94 25-120 17-110 (209)
200 3ix6_A TS, tsase, thymidylate 97.4 2.3E-05 8E-10 82.2 -0.3 84 27-111 19-102 (360)
201 3goe_A DNA repair protein RAD6 97.3 0.00071 2.4E-08 55.9 7.6 71 29-100 9-81 (82)
202 3v7o_A Minor nucleoprotein VP3 97.3 4E-05 1.4E-09 74.6 0.0 80 100-182 16-95 (227)
203 2jxx_A Nfatc2-interacting prot 97.3 0.00074 2.5E-08 58.3 7.9 73 26-99 22-96 (97)
204 3goe_A DNA repair protein RAD6 97.2 0.00092 3.1E-08 55.2 7.9 71 106-178 10-81 (82)
205 4efo_A Serine/threonine-protei 97.2 0.00068 2.3E-08 58.2 7.2 64 113-178 21-87 (94)
206 2l76_A Nfatc2-interacting prot 97.1 0.0026 8.8E-08 54.5 9.6 75 26-101 18-92 (95)
207 3uf8_A Ubiquitin-like protein 97.0 0.0021 7.1E-08 62.6 9.3 82 98-182 14-95 (209)
208 4da1_A Protein phosphatase 1K, 96.9 0.00014 4.9E-09 77.0 0.0 84 27-111 28-111 (389)
209 2jxx_A Nfatc2-interacting prot 96.9 0.0025 8.6E-08 54.9 7.4 73 103-177 23-96 (97)
210 2al3_A TUG long isoform; TUG U 96.8 0.0023 8E-08 54.3 6.9 75 103-179 7-81 (90)
211 2bps_A YUKD protein; ubiquitin 96.5 0.0035 1.2E-07 52.3 5.8 70 28-98 3-80 (81)
212 2l76_A Nfatc2-interacting prot 96.3 0.011 3.6E-07 50.7 7.6 73 106-181 22-94 (95)
213 3ix6_A TS, tsase, thymidylate 96.3 0.00066 2.3E-08 71.3 0.0 80 99-181 15-94 (360)
214 2al3_A TUG long isoform; TUG U 96.2 0.0056 1.9E-07 52.0 5.4 74 27-101 7-81 (90)
215 3akj_A CTKA; protein kinase, t 96.2 0.0011 3.9E-08 68.7 1.3 45 406-450 139-185 (325)
216 2kc2_A Talin-1, F1; FERM, adhe 96.1 0.0037 1.3E-07 56.5 4.1 69 107-176 13-119 (128)
217 4da1_A Protein phosphatase 1K, 95.5 0.0023 7.9E-08 67.7 0.0 76 103-181 28-103 (389)
218 2bps_A YUKD protein; ubiquitin 95.5 0.026 8.9E-07 47.0 6.4 64 113-176 14-80 (81)
219 2kc2_A Talin-1, F1; FERM, adhe 95.3 0.0091 3.1E-07 54.0 3.2 70 31-101 13-122 (128)
220 3qx1_A FAS-associated factor 1 94.8 0.076 2.6E-06 43.9 7.2 74 26-100 4-82 (84)
221 2dzk_A UBX domain-containing p 94.4 0.14 5E-06 44.6 8.4 78 23-100 7-89 (109)
222 2r2o_A Plexin-B1; effector dom 93.9 0.11 3.7E-06 47.4 6.7 77 27-104 22-131 (138)
223 4e71_A Plexin-B2, MM1; transme 93.4 0.12 4.2E-06 45.4 5.9 75 27-101 9-110 (111)
224 3qx1_A FAS-associated factor 1 93.0 0.19 6.6E-06 41.4 6.4 68 106-176 8-80 (84)
225 2x6h_A GH13170P, VPS34, phosph 92.9 0.95 3.3E-05 51.4 13.9 140 407-575 537-679 (696)
226 1wj4_A KIAA0794 protein; UBX d 91.4 0.58 2E-05 41.7 8.0 72 27-99 41-117 (124)
227 3ls8_A Phosphatidylinositol 3- 91.1 1.1 3.6E-05 50.3 11.4 140 407-575 463-605 (614)
228 3jyu_A Ubiquitin carboxyl-term 90.7 1 3.6E-05 44.1 9.8 66 40-105 153-224 (231)
229 2cr5_A Reproduction 8; UBX dom 90.4 0.69 2.4E-05 40.1 7.3 74 26-100 20-97 (109)
230 4a3p_A Ubiquitin carboxyl-term 90.3 0.83 2.8E-05 44.4 8.6 66 40-105 141-212 (217)
231 3h6n_A Plexin-D1; structural g 89.6 0.77 2.6E-05 41.2 6.9 65 38-102 16-105 (127)
232 2wxf_A Phosphatidylinositol-4, 89.5 1.7 5.8E-05 51.0 11.8 142 408-573 775-920 (940)
233 1wj4_A KIAA0794 protein; UBX d 89.4 0.69 2.4E-05 41.2 6.6 72 103-177 41-117 (124)
234 2dzk_A UBX domain-containing p 89.1 0.69 2.4E-05 40.2 6.3 71 106-178 14-89 (109)
235 4e74_A Plexin-A4; RBD, structu 88.5 1.1 3.7E-05 39.8 7.0 76 27-102 11-115 (117)
236 4e71_A Plexin-B2, MM1; transme 88.4 1.2 4.2E-05 39.1 7.2 64 115-178 23-109 (111)
237 2daj_A KIAA0977 protein, COBL- 88.4 1.3 4.3E-05 37.2 6.9 69 23-92 4-76 (91)
238 1ryj_A Unknown; beta/alpha pro 87.3 3.2 0.00011 32.9 8.6 66 29-104 4-69 (70)
239 1oey_A P67-PHOX, neutrophil cy 87.2 1.4 4.9E-05 36.6 6.6 50 26-76 2-51 (83)
240 2l32_A Small archaeal modifier 87.1 0.94 3.2E-05 36.7 5.4 66 30-106 1-67 (74)
241 2ylm_A Ubiquitin carboxyl-term 86.6 1.9 6.4E-05 47.4 9.3 134 41-176 38-214 (530)
242 2ylm_A Ubiquitin carboxyl-term 86.3 2.2 7.7E-05 46.8 9.7 114 28-142 338-477 (530)
243 1s3s_G P47 protein; AAA ATPase 85.9 0.95 3.2E-05 40.4 5.3 70 27-96 50-123 (127)
244 3hhm_A Phosphatidylinositol-4, 85.7 3.4 0.00012 49.1 11.3 142 408-573 924-1071(1091)
245 3ivf_A Talin-1; FERM domain, c 85.1 1.8 6E-05 45.0 7.7 63 115-177 12-82 (371)
246 2r2o_A Plexin-B1; effector dom 84.2 1.8 6.2E-05 39.3 6.3 67 115-181 40-130 (138)
247 2cr5_A Reproduction 8; UBX dom 83.0 2.3 7.8E-05 36.8 6.3 70 105-177 23-96 (109)
248 2y3a_A Phosphatidylinositol-4, 83.0 5.1 0.00017 47.8 11.2 142 408-573 927-1072(1092)
249 2juo_A GA-binding protein alph 82.7 1.8 6E-05 36.2 5.1 62 40-102 4-65 (89)
250 1s3s_G P47 protein; AAA ATPase 82.6 1.8 6.3E-05 38.5 5.7 68 106-175 53-124 (127)
251 3h6n_A Plexin-D1; structural g 81.7 4.1 0.00014 36.5 7.5 67 114-180 15-105 (127)
252 1e7u_A Phosphatidylinositol 3- 81.4 6.2 0.00021 46.4 11.1 142 408-574 791-937 (961)
253 2juo_A GA-binding protein alph 79.5 6 0.0002 33.0 7.2 60 118-179 5-64 (89)
254 1vjk_A Molybdopterin convertin 78.0 7.1 0.00024 32.7 7.6 73 26-104 6-97 (98)
255 1ip9_A BEM1 protein; ubiquitin 78.0 7.6 0.00026 32.4 7.4 44 28-73 11-54 (85)
256 4e74_A Plexin-A4; RBD, structu 75.3 5.5 0.00019 35.2 6.3 66 115-180 26-115 (117)
257 1vd2_A Protein kinase C, IOTA 74.4 13 0.00044 31.2 8.1 50 26-75 3-53 (89)
258 3jyu_A Ubiquitin carboxyl-term 74.2 7 0.00024 38.1 7.5 61 117-179 153-220 (231)
259 3ig3_A Plxna3 protein; plexin 73.8 7.2 0.00025 43.4 8.1 76 27-102 231-335 (627)
260 3hm6_X Plexin-B1; structural g 73.7 5.6 0.00019 44.3 7.2 77 27-103 255-363 (644)
261 3kuz_A Plexin-C1; structural g 71.2 5.6 0.00019 35.6 5.3 61 39-99 39-124 (126)
262 4a3p_A Ubiquitin carboxyl-term 68.0 9.9 0.00034 36.6 6.9 61 117-179 141-208 (217)
263 3rpf_C Molybdopterin convertin 65.8 9.9 0.00034 30.1 5.4 70 30-105 1-74 (74)
264 2cu3_A Unknown function protei 64.7 13 0.00044 28.6 5.7 62 34-104 2-63 (64)
265 2kvr_A Ubiquitin carboxyl-term 64.6 5.6 0.00019 35.6 4.1 34 41-74 58-91 (130)
266 3tpd_A Serine/threonine-protei 64.3 1.5 5E-05 46.9 0.2 38 406-443 293-330 (440)
267 1tyg_B YJBS; alpha beta barrel 62.5 12 0.00041 31.2 5.4 69 26-104 17-86 (87)
268 1h4r_A Merlin; FERM, neurofibr 62.4 19 0.00065 36.1 8.1 75 104-180 21-99 (314)
269 1ef1_A Moesin; membrane, FERM 61.6 16 0.00055 36.1 7.3 72 106-179 2-78 (294)
270 2daj_A KIAA0977 protein, COBL- 60.2 27 0.00092 29.2 7.0 60 109-170 14-76 (91)
271 3kuz_A Plexin-C1; structural g 60.0 29 0.001 30.9 7.7 62 116-177 39-124 (126)
272 4eut_A Serine/threonine-protei 58.9 14 0.00047 37.9 6.4 52 37-88 320-372 (396)
273 1oey_A P67-PHOX, neutrophil cy 55.8 10 0.00035 31.4 3.8 46 106-155 6-51 (83)
274 3po0_A Small archaeal modifier 54.1 31 0.001 27.9 6.6 61 39-105 18-89 (89)
275 2lgx_A Fermitin family homolog 48.8 26 0.00089 30.5 5.3 73 27-100 22-101 (112)
276 2qjl_A URM1, ubiquitin-related 47.0 75 0.0026 26.3 8.0 65 39-105 20-99 (99)
277 2i1j_A Moesin; FERM, coiled-co 47.0 34 0.0012 37.8 7.5 72 106-179 5-81 (575)
278 1vjk_A Molybdopterin convertin 46.8 71 0.0024 26.4 7.8 57 116-177 27-92 (98)
279 3dwg_C 9.5 kDa culture filtrat 46.2 39 0.0013 27.5 6.1 61 42-105 20-93 (93)
280 3ig3_A Plxna3 protein; plexin 45.9 58 0.002 36.3 8.9 66 115-180 246-335 (627)
281 3hm6_X Plexin-B1; structural g 45.3 40 0.0014 37.6 7.5 64 116-179 274-361 (644)
282 2k5p_A THis protein, thiamine- 45.3 23 0.00079 28.6 4.3 64 34-105 3-69 (78)
283 1wgk_A Riken cDNA 2900073H19 p 45.3 49 0.0017 28.7 6.7 76 28-105 10-108 (114)
284 2kl0_A Putative thiamin biosyn 44.9 17 0.00059 29.0 3.5 63 34-105 3-65 (73)
285 1ryj_A Unknown; beta/alpha pro 44.6 69 0.0023 24.9 7.0 61 105-177 4-64 (70)
286 1wgr_A Growth factor receptor- 44.0 23 0.00079 30.3 4.3 61 106-167 10-76 (100)
287 1wgr_A Growth factor receptor- 44.0 49 0.0017 28.3 6.3 43 26-68 6-49 (100)
288 1q1o_A Cell division control p 43.9 35 0.0012 29.2 5.3 38 28-65 4-49 (98)
289 2l32_A Small archaeal modifier 40.5 42 0.0014 26.8 5.1 59 106-176 1-59 (74)
290 1f0z_A THis protein; ubiquitin 40.3 34 0.0012 26.3 4.5 63 34-104 3-65 (66)
291 3qij_A Protein 4.1; cytoskelet 39.3 41 0.0014 33.6 6.1 63 104-167 16-83 (296)
292 2kmm_A Guanosine-3',5'-BIS(dip 38.4 45 0.0015 25.6 5.0 63 106-179 1-63 (73)
293 2kmc_A Fermitin family homolog 38.2 85 0.0029 26.9 6.8 69 30-99 20-97 (102)
294 3qa8_A MGC80376 protein; kinas 36.5 26 0.00088 39.6 4.4 51 37-88 320-371 (676)
295 2kvr_A Ubiquitin carboxyl-term 34.5 22 0.00075 31.7 2.8 33 118-152 58-90 (130)
296 2kmc_A Fermitin family homolog 33.0 1.2E+02 0.0042 25.9 7.0 73 106-178 20-98 (102)
297 1h4r_A Merlin; FERM, neurofibr 33.0 1.1E+02 0.0039 30.2 8.2 71 27-99 20-96 (314)
298 3rpf_C Molybdopterin convertin 32.0 1.2E+02 0.0041 23.5 6.6 53 120-177 16-68 (74)
299 1ef1_A Moesin; membrane, FERM 31.9 2.4E+02 0.0081 27.5 10.3 67 29-97 1-74 (294)
300 2cu1_A Mitogen-activated prote 31.6 1.4E+02 0.0049 25.5 7.1 50 26-78 5-54 (103)
301 2q5w_D Molybdopterin convertin 30.2 45 0.0016 26.0 3.8 59 39-104 16-76 (77)
302 1fm0_D Molybdopterin convertin 29.6 53 0.0018 25.8 4.1 60 39-105 17-81 (81)
303 1rws_A Hypothetical protein PF 28.5 25 0.00084 28.1 1.9 53 42-104 24-76 (77)
304 3po0_A Small archaeal modifier 28.4 1.3E+02 0.0044 24.1 6.3 57 116-177 18-83 (89)
305 1t3q_A Quinoline 2-oxidoreduct 27.7 63 0.0022 29.7 4.8 31 27-57 7-37 (168)
306 1vd2_A Protein kinase C, IOTA 26.7 1.1E+02 0.0038 25.5 5.6 48 108-156 7-55 (89)
307 4eut_A Serine/threonine-protei 26.4 1.1E+02 0.0039 30.8 7.0 60 115-176 321-383 (396)
308 2c60_A Human mitogen-activated 24.7 2.5E+02 0.0084 24.2 7.4 70 4-79 9-78 (111)
309 2knz_A Ubiquilin-4; cytoplasm, 24.4 48 0.0016 24.7 2.7 33 485-517 13-45 (53)
310 2jy5_A Ubiquilin-1; UBA, alter 24.1 56 0.0019 24.3 3.0 34 484-517 13-46 (52)
311 2l52_A Methanosarcina acetivor 23.0 1.5E+02 0.0053 24.4 6.0 71 30-105 4-99 (99)
312 2g1e_A Hypothetical protein TA 22.3 1.6E+02 0.0055 23.3 5.8 60 43-104 19-89 (90)
313 1wgy_A RAP guanine nucleotide 22.3 2E+02 0.0068 24.7 6.5 50 27-76 7-60 (104)
314 1b0n_B Protein (SINI protein); 21.9 52 0.0018 25.3 2.5 25 509-533 16-40 (57)
315 2g3q_A Protein YBL047C; endocy 21.1 62 0.0021 22.7 2.6 33 484-517 5-37 (43)
316 2k9x_A Tburm1, uncharacterized 20.9 20 0.00067 31.1 -0.1 75 29-106 4-103 (110)
317 3qa8_A MGC80376 protein; kinas 20.1 1.1E+02 0.0039 34.3 5.8 52 113-166 319-371 (676)
No 1
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.98 E-value=4e-32 Score=258.21 Aligned_cols=154 Identities=26% Similarity=0.470 Sum_probs=145.0
Q ss_pred CCCCCCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120 23 GRSSSESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 23 ~~~~~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
++.+...|+|+| +++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|. |+.+|++|||+++++|+|+++
T Consensus 14 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~-d~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 14 LVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp -----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTGGGTCCTTCEEEEEEC
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCcccc-ccCCHhHcCCcccceeeeeec
Confidence 444578899999 589999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred eccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 102 LSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 102 Lsd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
+.++|.|+|++.+|+++.++|++++||.+||++|+.+.|+| +++|+|+|+|+.|+|.++|++|+|+++++|||++|
T Consensus 93 ~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip--~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 93 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp CCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-
T ss_pred ccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCC--ceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEe
Confidence 99999999999999999999999999999999999999987 99999999999999999999999999999999876
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.97 E-value=2.4e-31 Score=249.21 Aligned_cols=149 Identities=17% Similarity=0.206 Sum_probs=143.6
Q ss_pred cEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEE-E-cCeeccCCCCcccccccccccccceeee-ecc
Q 008120 29 SILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLV-F-GGRELARNHSLVKDYGVTGGNVLHLVLK-LSD 104 (577)
Q Consensus 29 sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLi-f-~Gk~L~~D~~tL~dygI~dgstL~Lvlr-Lsd 104 (577)
.|+|+| +++|++++++|++++||.+||++|+..+|+|+++|+|+ | +|++|. |+.+|++|||++|++|+|+++ +++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~-d~~tL~~y~i~~~~~l~l~~~~~~~ 80 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQ-DRVPLASQGLGPGSTVLLVVDKSDE 80 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCC-TTSCGGGGTCCTTCEEEEEECCCCC
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCC-CCCCHHHcCCCCCCEEEEEccCCCC
Confidence 489999 68999999999999999999999999999999999999 9 799998 999999999999999999999 699
Q ss_pred ccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 105 LLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 105 ~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
+|.|+|++.+|+++.++|++++||.+||++|+.+.|+| +++|+|+|+|+.|+|+++|++|+|+++++|||++|-
T Consensus 81 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl 154 (159)
T 3rt3_B 81 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 154 (159)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCC--HHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEec
Confidence 99999999999999999999999999999999999987 999999999999999999999999999999999873
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.96 E-value=1.8e-29 Score=233.03 Aligned_cols=149 Identities=27% Similarity=0.493 Sum_probs=144.1
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecccccc
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLLLI 108 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~m~I 108 (577)
|+|+| +.+|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|. |+.+|++|||.+|++|+|+.+..++|.|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~-d~~tL~~~~i~~~~~l~l~~~~~~~~~i 79 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGMQI 79 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCTTCEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECc-CcccHHHhccCCCCeeEEEeecccccce
Confidence 89999 578999999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred ccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecC
Q 008120 109 TVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKS 181 (577)
Q Consensus 109 ~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks 181 (577)
+|++.+|+.+.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+.+|++|+++++++|||++|..
T Consensus 80 ~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~ 150 (152)
T 3b08_A 80 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 150 (152)
T ss_dssp EEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred eeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 9999999999999999999999999999999987 9999999999999999999999999999999998743
No 4
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.5e-18 Score=152.47 Aligned_cols=103 Identities=26% Similarity=0.462 Sum_probs=98.3
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
-...+|+| +++|+++.++|++++||.+||.+|++..|+|+++|+|+|+|++|. |+.+|++|||++|++|+|++++.++
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLE-DGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 56789999 789999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred cccccc---cCCCceeEEeeccCCchhh
Q 008120 106 LLITVR---TSCGKELEFHIDRYRNVGY 130 (577)
Q Consensus 106 m~I~Vr---t~~Gk~~~i~Vd~~~TV~~ 130 (577)
+.++++ +.+|++++++|++++||+.
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 86 SMGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ceeeccccccccCceEEEEeccccccCC
Confidence 999999 7789999999999999975
No 5
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=131.75 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=72.6
Q ss_pred CcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 28 ESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 28 ~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
..|+|+| +++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|++++.|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCC
Confidence 5799999 578999999999999999999999999999999999999999999 999999999999999999999864
No 6
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=134.76 Aligned_cols=88 Identities=22% Similarity=0.252 Sum_probs=71.7
Q ss_pred ccccccccceeeeeccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCC
Q 008120 89 GVTGGNVLHLVLKLSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICK 168 (577)
Q Consensus 89 gI~dgstL~LvlrLsd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I 168 (577)
|+.++++++++++.+..|.|+||+.+|+++.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+.+|++|+|
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i 78 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP--SEKQRLIYQGRVLQDDKKLQEYNV 78 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTC
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEECCCCCcHHHcCC
Confidence 456788999999999999999999999999999999999999999999999987 999999999999999999999999
Q ss_pred CCCCEEEEEEe
Q 008120 169 DNDAVIHLLVQ 179 (577)
Q Consensus 169 ~~~svI~Lvvr 179 (577)
+|++|||++|
T Consensus 79 -~g~~i~lv~R 88 (88)
T 4eew_A 79 -GGKVIHLVER 88 (88)
T ss_dssp -TTEEEEEEEC
T ss_pred -CCcEEEEEEC
Confidence 8999999875
No 7
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.64 E-value=3.1e-16 Score=131.86 Aligned_cols=82 Identities=30% Similarity=0.591 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120 23 GRSSSESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 23 ~~~~~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
++.+...|+|+| +++|+++.++|++++||.+||.+|++..|+|++.|+|+|+|+.|. |+.+|++|||++|++|+|+++
T Consensus 6 ~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 6 SVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp CSSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTSBGGGGTCCTTCEEEECCC
T ss_pred CCCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEe
Confidence 334577899999 579999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred eccc
Q 008120 102 LSDL 105 (577)
Q Consensus 102 Lsd~ 105 (577)
+.+|
T Consensus 85 l~GG 88 (88)
T 3dbh_I 85 LRGG 88 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8875
No 8
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.64 E-value=4.1e-16 Score=132.84 Aligned_cols=78 Identities=32% Similarity=0.618 Sum_probs=73.6
Q ss_pred CCCCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeec
Q 008120 25 SSSESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLS 103 (577)
Q Consensus 25 ~~~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLs 103 (577)
.+...|+|+| +.+|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|++|++
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 13 VPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECC-CcCcHHHCCCCCCCEEEEEEecC
Confidence 3477899999 589999999999999999999999999999999999999999999 99999999999999999999874
No 9
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.64 E-value=3.7e-16 Score=134.93 Aligned_cols=91 Identities=26% Similarity=0.457 Sum_probs=72.7
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecccccc
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLLLI 108 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~m~I 108 (577)
|+|+| +.+|+++.++|++++||.+||.+|++..|+|++.|+|+|+|+.|. |+.+|++|||.+|++|+|++++.++..+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~gG~~i 79 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGRDP 79 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCCCC---
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEeCCCCCcC
Confidence 89999 568999999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred ccccCCCceeEEe
Q 008120 109 TVRTSCGKELEFH 121 (577)
Q Consensus 109 ~Vrt~~Gk~~~i~ 121 (577)
+.+|.+|+.-.++
T Consensus 80 ~~~~v~~~~~~~~ 92 (98)
T 1yx5_B 80 NSSSVDKLAAALE 92 (98)
T ss_dssp -------------
T ss_pred ccccCCCchhhhh
Confidence 9999998765543
No 10
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.63 E-value=4.2e-16 Score=132.28 Aligned_cols=77 Identities=30% Similarity=0.566 Sum_probs=71.2
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccccc
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLLL 107 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~m~ 107 (577)
|+|+| +++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|++++.++..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~l~l~~rl~Gg~~ 78 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLALRGGGG 78 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTTTTTCCTTCEEEEECBCC----
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEECCCCCC
Confidence 89999 689999999999999999999999999999999999999999998 999999999999999999999998853
No 11
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.62 E-value=5.3e-16 Score=133.21 Aligned_cols=72 Identities=28% Similarity=0.304 Sum_probs=68.5
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCccccccccccccccee
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lv 99 (577)
+.-|+|+| +..|+++.++|+|++||.+||++|+++.|+|+++|+|+|+|++|+ |+.+|++|+|++|++|+|.
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~Lk-D~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLK-DHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEE
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEcc-CcCCHHHcCCCCCCEEEEE
Confidence 67799999 589999999999999999999999999999999999999999999 9999999999999999985
No 12
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.6e-16 Score=133.67 Aligned_cols=82 Identities=28% Similarity=0.529 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120 23 GRSSSESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 23 ~~~~~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
++..+..|+|+| +++|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+++
T Consensus 16 ~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~i~l~~r 94 (98)
T 4hcn_B 16 LYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLR 94 (98)
T ss_dssp ------CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTCBSGGGTCCTTEEEEEECB
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEe
Confidence 334578899999 589999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred eccc
Q 008120 102 LSDL 105 (577)
Q Consensus 102 Lsd~ 105 (577)
+.+|
T Consensus 95 l~GG 98 (98)
T 4hcn_B 95 LRGG 98 (98)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8875
No 13
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.60 E-value=1.1e-15 Score=126.47 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=72.6
Q ss_pred CcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 28 ESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 28 ~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
+.|+|+| +++|+++.++|.+++||.+||++|++..|+|+++|+|+|+|++|. |+.+|++|+|++|++|++++++.||
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~-d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeC-CCCCHHHcCCCCCCEEEEEEeccCC
Confidence 3699999 589999999999999999999999999999999999999999999 9999999999999999999998765
No 14
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.60 E-value=1.4e-15 Score=130.69 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=69.9
Q ss_pred eeeeeccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 98 LVLKLSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 98 LvlrLsd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
|+...+..|.|+||+..|+++.++|++++||.+||++|+++.|++ +++|+|+|+|++|+|+.+|+||+|++|++|||.
T Consensus 14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip--~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQ--PNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCC--HHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 344456678999999999999999999999999999999999987 999999999999999999999999999999985
No 15
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.60 E-value=1.8e-15 Score=127.75 Aligned_cols=75 Identities=20% Similarity=0.264 Sum_probs=71.0
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCee-ccCCCCcccccccccccccceeeee
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRE-LARNHSLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~-L~~D~~tL~dygI~dgstL~LvlrL 102 (577)
-.-|+|+| ++.|++++++|++++||++||++|++.+|+|+++|+|+|+|++ |+ |+.+|++|||++|++|+|++++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~-D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILR-EDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCC-SSSBHHHHTCCTTSCEEEEECC
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecC-CcCCHHHcCCCCCCEEEEEEcC
Confidence 45699999 7899999999999999999999999999999999999999999 98 9999999999999999998763
No 16
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.59 E-value=2e-15 Score=124.82 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=71.4
Q ss_pred ccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 103 SDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
...|.|+||+.+|+++.++|++++||.+||++|+++.++| +++|+|+|+|+.|+|+.+|++|+|+++++|||++|
T Consensus 2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCC--HHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 3568999999999999999999999999999999999987 99999999999999999999999999999999987
No 17
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.59 E-value=2.4e-15 Score=129.58 Aligned_cols=82 Identities=22% Similarity=0.331 Sum_probs=75.0
Q ss_pred CCCCCCCcEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCC-Cccccccccccccccee
Q 008120 22 TGRSSSESILIYLS-VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNH-SLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 22 ~~~~~~~sM~I~Vt-l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~-~tL~dygI~dgstL~Lv 99 (577)
.+......|+|+|+ +.| ++.++|++++||.+||++|++.+|+|+++|+|+|+|++|. |+ .+|++|||++|++|+|+
T Consensus 8 ~~~~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~~tL~~ygI~~gstl~lv 85 (94)
T 2kan_A 8 HSHAAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELA-DDYRNLNEYGITEFSEIVVF 85 (94)
T ss_dssp CSCSSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEEC-CTTSBHHHHTCCTTEEEEEE
T ss_pred ccccCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECC-CCcccHHHCCCCCCCEEEEE
Confidence 34456788999994 555 8999999999999999999999999999999999999999 78 99999999999999999
Q ss_pred eeeccc
Q 008120 100 LKLSDL 105 (577)
Q Consensus 100 lrLsd~ 105 (577)
+++.++
T Consensus 86 ~r~~gg 91 (94)
T 2kan_A 86 LKSINR 91 (94)
T ss_dssp ECCCSS
T ss_pred EeCCCC
Confidence 998876
No 18
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.59 E-value=2.2e-15 Score=122.57 Aligned_cols=75 Identities=31% Similarity=0.620 Sum_probs=70.2
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
|+|+| +.+|+++.++|++++||.+||.+|++..|+|++.|+|+|+|+.|. |+.+|++|||++|++|++++++.||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 89999 468999999999999999999999999999999999999999998 9999999999999999999998775
No 19
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.59 E-value=2.7e-15 Score=127.11 Aligned_cols=77 Identities=23% Similarity=0.422 Sum_probs=71.9
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
+..|+|+| +++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++||| +|++|||++++...
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECC-CCCCHHHcCC-CCcEEEEEecCCCC
Confidence 46799999 678999999999999999999999999999999999999999998 9999999999 89999999987653
No 20
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.9e-15 Score=123.00 Aligned_cols=76 Identities=24% Similarity=0.421 Sum_probs=72.0
Q ss_pred CCCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeee
Q 008120 26 SSESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 26 ~~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrL 102 (577)
++..|+|+| +.+|+.+.++|++++||++||++|++..|+|++.|+|+|+|+.|. |+.+|++|||++|++|+|++++
T Consensus 4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALA-DGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECC-TTSBGGGGTCCSSBCCEEECCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEeC
Confidence 467899999 578999999999999999999999999999999999999999998 8999999999999999999876
No 21
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=3.4e-15 Score=125.50 Aligned_cols=79 Identities=23% Similarity=0.294 Sum_probs=74.9
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
+..|+|+| +.+|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.++
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~-d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQ-DWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECC-SSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEcc-CCCCHHHCCCCCCCEEEEEEeccCC
Confidence 56799999 578999999999999999999999999999999999999999998 9999999999999999999999876
Q ss_pred c
Q 008120 106 L 106 (577)
Q Consensus 106 m 106 (577)
.
T Consensus 84 ~ 84 (87)
T 1wh3_A 84 P 84 (87)
T ss_dssp S
T ss_pred C
Confidence 3
No 22
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=1.8e-15 Score=126.21 Aligned_cols=77 Identities=30% Similarity=0.509 Sum_probs=70.8
Q ss_pred CcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 28 ESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 28 ~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
..|+|+| +.+|+++.++|++++||.+||++|++.+++|+++|+|+|+|++|. |+.+|++|+|+++++|+|++++.++
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECC-TTCBTTTTTCCTTCEEEEEECCC--
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECC-CCCCHHHCCCCCCCEEEEEEeccCC
Confidence 4699999 578999999999999999999999999999999999999999998 8999999999999999999999876
No 23
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=3.1e-15 Score=124.62 Aligned_cols=77 Identities=29% Similarity=0.554 Sum_probs=72.9
Q ss_pred CcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 28 ESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 28 ~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
..|+|+| +.+|+++.++|++++||.+||++|++..++|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.++
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEECcCC
Confidence 4699999 578999999999999999999999999999999999999999999 9999999999999999999998776
No 24
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=3.6e-15 Score=122.78 Aligned_cols=75 Identities=19% Similarity=0.333 Sum_probs=69.6
Q ss_pred CcEEEEE-EeCCeEE-EEE-eCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeec
Q 008120 28 ESILIYL-SVSGSLV-PMR-VLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLS 103 (577)
Q Consensus 28 ~sM~I~V-tl~G~~~-~le-V~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLs 103 (577)
..|+|+| +.+|+++ +++ |++++||.+||++|++..|+|+++|+|+|+|++|. |+.+|++|||++|++|+|+++++
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~-d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQME-DGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEeCC
Confidence 3699999 6788874 999 99999999999999999999999999999999998 99999999999999999998863
No 25
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.58 E-value=4.4e-15 Score=120.76 Aligned_cols=75 Identities=32% Similarity=0.617 Sum_probs=71.5
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
|+|+| +.+|+.+.++|++++||.+||++|++..|+|++.|+|+|+|+.|. |+.+|++|||++|++|++++++.||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 89999 568999999999999999999999999999999999999999998 8999999999999999999998775
No 26
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.58 E-value=3.8e-15 Score=127.55 Aligned_cols=79 Identities=30% Similarity=0.596 Sum_probs=72.0
Q ss_pred cEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccccc
Q 008120 29 SILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLLL 107 (577)
Q Consensus 29 sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~m~ 107 (577)
.|+|+| +++|+++.++|++++||.+||.+|++.+|+|++.|+|+|+|+.|. |+.+|++|||++|++|+|++++.++..
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~i~l~~r~~gG~~ 79 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGYAD 79 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCCC---
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEcCCCCc
Confidence 489999 678999999999999999999999999999999999999999999 999999999999999999999998875
Q ss_pred c
Q 008120 108 I 108 (577)
Q Consensus 108 I 108 (577)
.
T Consensus 80 ~ 80 (96)
T 3k9o_B 80 L 80 (96)
T ss_dssp -
T ss_pred c
Confidence 4
No 27
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.57 E-value=2.2e-15 Score=130.25 Aligned_cols=79 Identities=16% Similarity=0.278 Sum_probs=74.3
Q ss_pred CCCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 26 SSESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 26 ~~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
++..|+|+| +++|+++.++|.+++||.+||.+|+.+.|+|+++|+|+|+|++|. |+.+|++|+|++|++|+|++++.|
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~-d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTCEEEEEESSSC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcC-CCCCHHHCCCCCCCEEEEEEecCC
Confidence 356799999 689999999999999999999999999999999999999999999 999999999999999999999877
Q ss_pred c
Q 008120 105 L 105 (577)
Q Consensus 105 ~ 105 (577)
|
T Consensus 97 G 97 (97)
T 1wyw_B 97 G 97 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 28
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.57 E-value=2.4e-15 Score=129.05 Aligned_cols=82 Identities=15% Similarity=0.303 Sum_probs=71.1
Q ss_pred CCCCCCCcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120 22 TGRSSSESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 22 ~~~~~~~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
..+.....|+|+|+. |+++.++|++++||.+||++|++..|+|+++|+|+|+|++|. |+.+|++|+|++|++|+|+++
T Consensus 12 ~~~~~~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 12 SGLVPRGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLE-DEATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp --------CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECC-TTSBHHHHTCCSSCEEEEECC
T ss_pred cCCCCCCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEe
Confidence 333446779999966 899999999999999999999999999999999999999998 999999999999999999999
Q ss_pred eccc
Q 008120 102 LSDL 105 (577)
Q Consensus 102 Lsd~ 105 (577)
+.||
T Consensus 90 l~GG 93 (93)
T 2l7r_A 90 MLGG 93 (93)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8875
No 29
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.57 E-value=5.5e-15 Score=124.86 Aligned_cols=80 Identities=20% Similarity=0.330 Sum_probs=74.5
Q ss_pred CCCcEEEEE-EeCC-eEEEE-EeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeee
Q 008120 26 SSESILIYL-SVSG-SLVPM-RVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 26 ~~~sM~I~V-tl~G-~~~~l-eV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrL 102 (577)
....|+|+| +..| +++.+ +|++++||.+||++|++..|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|++++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLE-NGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECC-SSSBHHHHTCCTTCEEEEEECC
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECC-CCCCHHHCCCCCCCEEEEEEeC
Confidence 357899999 5788 79999 599999999999999999999999999999999998 9999999999999999999998
Q ss_pred cccc
Q 008120 103 SDLL 106 (577)
Q Consensus 103 sd~m 106 (577)
.++.
T Consensus 83 ~gG~ 86 (89)
T 1wy8_A 83 DSGP 86 (89)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8764
No 30
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.57 E-value=4.9e-15 Score=125.05 Aligned_cols=73 Identities=25% Similarity=0.459 Sum_probs=69.3
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
+..|+|+| +++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|. |+.+|++||| +|++|||++|
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTC-TTEEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC-CCCcHHHcCC-CCcEEEEEEC
Confidence 56799999 678999999999999999999999999999999999999999999 8999999999 8999999875
No 31
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.57 E-value=4e-15 Score=141.43 Aligned_cols=124 Identities=23% Similarity=0.373 Sum_probs=96.6
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecccccc
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLLLI 108 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~m~I 108 (577)
|+|+| +++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|++|. |+.+|++|||++|++|||++++.+++..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~y~I~~gstI~Lvlrl~GG~k~ 79 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGGGE 79 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCCC---C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCcccc-CcCcHHHcCCCCCCEEEEEEEecccccc
Confidence 89999 789999999999999999999999999999999999999999998 9999999999999999999999999888
Q ss_pred ccccCC-Cc--eeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCC
Q 008120 109 TVRTSC-GK--ELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDD 159 (577)
Q Consensus 109 ~Vrt~~-Gk--~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD 159 (577)
.|+... |. +-.+.+.++.++..-++.+.-.. .+..++.|+-+-|.+
T Consensus 80 ~vkfs~~Gd~g~~~i~l~~~~~~~~~~~~~~i~~-----~~~~~~~fsl~yl~~ 128 (169)
T 3l0w_B 80 TIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEM-----DQPVDLTFGAKYLLD 128 (169)
T ss_dssp CEEEEEECSSCEEEEEECCBCCSSCGGGCBEEEE-----SSCEEEEEEHHHHHH
T ss_pred cccccccCcccceeEEEecCCCCCCcccceEEec-----CCcceEEEhHHHHHH
Confidence 877543 22 33566666666644333222211 234567777666654
No 32
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=4.2e-15 Score=126.09 Aligned_cols=78 Identities=27% Similarity=0.561 Sum_probs=68.7
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
-..|+|+| +++|+++.++|++++||++||++|++..|+|++.|+|+|+|+.|. |+.+|++|||++|++|+|++++.|+
T Consensus 7 ~~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 7 LQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp ---CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBSGGGTCCTTCEEEEEC-----
T ss_pred ccceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 35799999 789999999999999999999999999999999999999999998 8999999999999999999998876
No 33
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.56 E-value=2.9e-15 Score=126.98 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=70.2
Q ss_pred CcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecccc
Q 008120 28 ESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLL 106 (577)
Q Consensus 28 ~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~m 106 (577)
..|+|+| +++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|++|. |+.+|++|||++|++|+|++++.++-
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCC-TTSBHHHHHCSTTCEEEEEEC-----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 4699999 678999999999999999999999999999999999999999998 99999999999999999999987763
No 34
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.56 E-value=6.4e-15 Score=130.57 Aligned_cols=78 Identities=31% Similarity=0.577 Sum_probs=73.5
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
...|+|+| +++|+++.++|.+++||.+||.+|++..|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|++++.+|
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCCC
Confidence 45799999 578999999999999999999999999999999999999999999 9999999999999999999998875
No 35
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=6.2e-15 Score=121.37 Aligned_cols=76 Identities=25% Similarity=0.303 Sum_probs=71.1
Q ss_pred cccccccccCCCcee-EEe-eccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecC
Q 008120 104 DLLLITVRTSCGKEL-EFH-IDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKS 181 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~-~i~-Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks 181 (577)
|.|+|+|++.+|+++ .++ |++++||.+||++|+.+.+++ +++|+|+|+|+.|+|+.+|++|++++|++|||++|.+
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip--~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE--PGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 468999999999995 899 999999999999999999987 9999999999999999999999999999999998753
No 36
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=2.6e-15 Score=132.16 Aligned_cols=80 Identities=19% Similarity=0.393 Sum_probs=73.5
Q ss_pred CCCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccc---------------cEEEEEcCeeccCCCCcccccc
Q 008120 26 SSESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVK---------------KQKLVFGGRELARNHSLVKDYG 89 (577)
Q Consensus 26 ~~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~---------------~QrLif~Gk~L~~D~~tL~dyg 89 (577)
....|+|+| +++|++++++|.+++||++||++|++.+++|+. +|+|+|+|+.|.+|+.+|++||
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred CCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 356799999 799999999999999999999999999999884 5799999999986789999999
Q ss_pred cccccccceeeeeccc
Q 008120 90 VTGGNVLHLVLKLSDL 105 (577)
Q Consensus 90 I~dgstL~LvlrLsd~ 105 (577)
|++|++||+++++.+.
T Consensus 84 I~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 84 IRNRDEVSFIKKLGQK 99 (105)
T ss_dssp CCSSEEEEEEECSCSC
T ss_pred CCCCCEEEEEehhccC
Confidence 9999999999998764
No 37
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.55 E-value=4.9e-15 Score=130.28 Aligned_cols=79 Identities=9% Similarity=0.183 Sum_probs=70.2
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecCCCcc
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSAKVR 185 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks~k~~ 185 (577)
|+|+||+.+|+.+.++|++++||.+||++|+.+.|++ +++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++...+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~~ 79 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCE--ESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKSTK 79 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSC--GGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--hhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCCC
Confidence 7899999999999999999999999999999999986 99999999999999999999999999999999998776555
Q ss_pred C
Q 008120 186 A 186 (577)
Q Consensus 186 ~ 186 (577)
.
T Consensus 80 ~ 80 (106)
T 3m62_B 80 T 80 (106)
T ss_dssp -
T ss_pred C
Confidence 4
No 38
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=4.9e-15 Score=129.16 Aligned_cols=73 Identities=22% Similarity=0.178 Sum_probs=68.5
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceee
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVL 100 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvl 100 (577)
...|+|+| ++.|++++++|++++||.+||++|++++|+|+++|||+|+|++|. |+.+|++|||+++++|+|..
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~-D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFK-DHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-SSCBHHHHTCCTTEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEe
Confidence 44599999 578999999999999999999999999999999999999999998 99999999999999999863
No 39
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.55 E-value=7.2e-15 Score=124.53 Aligned_cols=79 Identities=23% Similarity=0.265 Sum_probs=71.9
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSAK 183 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks~k 183 (577)
..|+|+||+.+|+++.++|++++||.+||++|+.+.+++ +++|+|+|+|+.|+|+.+|++|+| ++++|||+++.+..
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 458999999999999999999999999999999999987 999999999999999999999999 89999999986554
Q ss_pred cc
Q 008120 184 VR 185 (577)
Q Consensus 184 ~~ 185 (577)
.+
T Consensus 81 ~~ 82 (90)
T 4dwf_A 81 TH 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 33
No 40
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.54 E-value=9.2e-15 Score=127.14 Aligned_cols=77 Identities=10% Similarity=0.281 Sum_probs=70.1
Q ss_pred ccccccccccCCCceeEE--eeccCCchhhhHHHH-HhhCCCCCCCCceEEEECCeecCCCCcccccCC-CCCCEEEEEE
Q 008120 103 SDLLLITVRTSCGKELEF--HIDRYRNVGYLKQRI-ARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICK-DNDAVIHLLV 178 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk~~~i--~Vd~~~TV~~LK~kI-~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I-~~~svI~Lvv 178 (577)
...|.|+|||.+|++|.+ +|++++||.+||++| ++..|++ +++|||+|+|+.|+|..+|++|+| ++|++|+|++
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSC--GGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCC--hhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence 456899999999998887 555999999999999 8888876 999999999999999999999999 9999999999
Q ss_pred ecC
Q 008120 179 QKS 181 (577)
Q Consensus 179 rks 181 (577)
+++
T Consensus 95 skp 97 (98)
T 4a20_A 95 KPN 97 (98)
T ss_dssp CCC
T ss_pred eCC
Confidence 875
No 41
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.54 E-value=5.8e-15 Score=142.70 Aligned_cols=83 Identities=29% Similarity=0.504 Sum_probs=79.4
Q ss_pred cEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccccc
Q 008120 29 SILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLLL 107 (577)
Q Consensus 29 sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~m~ 107 (577)
.|+|+| +++|++++++|++++||.+||++|++.+|+|+++|+|+|+|++|. |+.+|++|+|++|++|||++++.++..
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~-D~~tL~dygI~~gstI~LvlrlrGG~~ 183 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGGQ 183 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTCBGGGGTCCTTCEEEECCCCCCCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECC-CCCCHHHCCCCCCCEEEEEEEcCCCCc
Confidence 499999 578999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred ccccc
Q 008120 108 ITVRT 112 (577)
Q Consensus 108 I~Vrt 112 (577)
++||.
T Consensus 184 ~fvk~ 188 (189)
T 3q3f_A 184 TFTKI 188 (189)
T ss_dssp CCCCC
T ss_pred ceEec
Confidence 98863
No 42
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.54 E-value=1.4e-14 Score=121.02 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=70.7
Q ss_pred ccccccccccCCCceeEEeeccCCchhhhHHHHHhh---CCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 103 SDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARK---GKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~---~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
+..|.|+|++.+|+.+.++|++++||.+||++|+.. .+++ +++|+|+|+|+.|+|+.+|++|+|+++++|||+++
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCC--GGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCC--HHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEc
Confidence 456899999999999999999999999999999997 7776 99999999999999999999999999999999887
Q ss_pred cCC
Q 008120 180 KSA 182 (577)
Q Consensus 180 ks~ 182 (577)
++.
T Consensus 81 ~~~ 83 (85)
T 2wyq_A 81 KTK 83 (85)
T ss_dssp ---
T ss_pred CCC
Confidence 653
No 43
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.9e-15 Score=130.72 Aligned_cols=94 Identities=18% Similarity=0.285 Sum_probs=67.8
Q ss_pred CCcccccccccccccceeeeeccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCC
Q 008120 82 HSLVKDYGVTGGNVLHLVLKLSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQR 161 (577)
Q Consensus 82 ~~tL~dygI~dgstL~LvlrLsd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~ 161 (577)
...++||.|. +|.++.++-.-.+.|+|++ +|+.+.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+.
T Consensus 7 ~~~~~~~~~~--~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~ 81 (101)
T 3m63_B 7 HHPMSDYDIP--TTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP--VANQRLIYSGKILKDDQ 81 (101)
T ss_dssp ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCC--STTCCEEETTEECCTTS
T ss_pred cCCccccCCC--cceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcC--hHHEEEEECCEECCCcC
Confidence 4567899984 5777666555556788887 89999999999999999999999999987 99999999999999999
Q ss_pred cccccCCCCCCEEEEEEec
Q 008120 162 LIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 162 tLsdy~I~~~svI~Lvvrk 180 (577)
+|++|+|++|++|+|+.+.
T Consensus 82 tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 82 TVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp BTTTTTCCTTEEEEECCCC
T ss_pred cHHHCCCCCCCEEEEEeCC
Confidence 9999999999999997764
No 44
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=4.9e-15 Score=126.13 Aligned_cols=72 Identities=17% Similarity=0.303 Sum_probs=67.2
Q ss_pred EEEEE-EeCCeEEEEEeC--CCCCHHHHHHHH-HHhhCCccccEEEEEcCeeccCCCCccccccc-ccccccceeeee
Q 008120 30 ILIYL-SVSGSLVPMRVL--ETDSIESVKLRI-QTCKGFVVKKQKLVFGGRELARNHSLVKDYGV-TGGNVLHLVLKL 102 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~--~sdTV~~LK~kI-~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI-~dgstL~LvlrL 102 (577)
|+|+| ++.|++++++|+ +++||.+||++| +...|+|+++|||+|+|++|. |+.+|++|+| ++|++|+|+++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~-D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLH-DNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECC-TTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECc-CcCCHHHcCCCCCCCEEEEEcCC
Confidence 89999 789998888755 999999999999 999999999999999999999 9999999999 799999998764
No 45
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.53 E-value=2.3e-14 Score=119.71 Aligned_cols=76 Identities=20% Similarity=0.414 Sum_probs=69.3
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHh---hCCccccEEEEEcCeeccCCCCcccccccccccccceeeee
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTC---KGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~---~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrL 102 (577)
+..|+|+| +.+|+.+.++|++++||.+||++|+.. +|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+++.
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECC-TTSBGGGGCCCTTSEEEEEEC-
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECc-CCCCHHHcCCCCCCEEEEEEcC
Confidence 45799999 678999999999999999999999997 899999999999999998 8999999999999999998764
Q ss_pred c
Q 008120 103 S 103 (577)
Q Consensus 103 s 103 (577)
.
T Consensus 82 ~ 82 (85)
T 2wyq_A 82 T 82 (85)
T ss_dssp -
T ss_pred C
Confidence 3
No 46
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.53 E-value=8.7e-15 Score=123.49 Aligned_cols=74 Identities=22% Similarity=0.231 Sum_probs=70.7
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCee-cCCCCcccccCCCCCCEEEEEEe
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEK-LDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~-LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
.-|+|+|++.+|+++.++|++++||.+||++|+.+.|++ +++|+|+|+|+. |+|+++|++|+|+++++|+|+++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIP--VSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 348999999999999999999999999999999999987 999999999999 99999999999999999999875
No 47
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.53 E-value=2.6e-14 Score=122.95 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=72.7
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhh---CCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecCC
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARK---GKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSA 182 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~---~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks~ 182 (577)
|+|+||+.+|+.+.++|++++||.+||++|+.. .|++ +++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFP--VAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCC--TTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCC--hhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999998 7776 99999999999999999999999999999999998665
Q ss_pred CccC
Q 008120 183 KVRA 186 (577)
Q Consensus 183 k~~~ 186 (577)
..+.
T Consensus 79 ~~~~ 82 (95)
T 1uel_A 79 AVST 82 (95)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 4433
No 48
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.53 E-value=1.1e-14 Score=123.47 Aligned_cols=73 Identities=27% Similarity=0.421 Sum_probs=70.3
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
|+|+|++.+|+++.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl 73 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLAL 73 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBC
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--hhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEEC
Confidence 6899999999999999999999999999999999987 999999999999999999999999999999999883
No 49
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=9.3e-15 Score=124.45 Aligned_cols=73 Identities=12% Similarity=0.300 Sum_probs=68.7
Q ss_pred cccccccCCCceeEEeec--cCCchhhhHHHH-HhhCCCCCCCCceEEEECCeecCCCCcccccCC-CCCCEEEEEEec
Q 008120 106 LLITVRTSCGKELEFHID--RYRNVGYLKQRI-ARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICK-DNDAVIHLLVQK 180 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd--~~~TV~~LK~kI-~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I-~~~svI~Lvvrk 180 (577)
|+|+|||.+|+++.++|+ +++||.+||++| +.+.|+| +++|||+|+|++|+|+.+|++|+| +++++|+|++++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSS--STTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCC--hHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 789999999999999866 999999999999 9999987 999999999999999999999999 799999998864
No 50
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.52 E-value=1.9e-14 Score=125.19 Aligned_cols=76 Identities=16% Similarity=0.312 Sum_probs=68.4
Q ss_pred CCCcEEEEE-EeCCeEEEE--EeCCCCCHHHHHHHH-HHhhCCccccEEEEEcCeeccCCCCccccccc-ccccccceee
Q 008120 26 SSESILIYL-SVSGSLVPM--RVLETDSIESVKLRI-QTCKGFVVKKQKLVFGGRELARNHSLVKDYGV-TGGNVLHLVL 100 (577)
Q Consensus 26 ~~~sM~I~V-tl~G~~~~l--eV~~sdTV~~LK~kI-~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI-~dgstL~Lvl 100 (577)
....|+|+| +++|+.+++ +|++++||.+||++| +...|+|+++|||+|+|++|. |+.+|++||| ++|++|+|++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~-D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLH-DNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEEC-TTCBGGGSCCBTTBCEEEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECc-CcCCHHHcCcCCCCCEEEEEE
Confidence 467899999 788987666 667999999999999 888999999999999999999 9999999999 9999999998
Q ss_pred ee
Q 008120 101 KL 102 (577)
Q Consensus 101 rL 102 (577)
+-
T Consensus 95 sk 96 (98)
T 4a20_A 95 KP 96 (98)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 51
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=7.3e-14 Score=126.53 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=69.9
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 27 SESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 27 ~~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
...|+|+|+..|+.+.++|++++||.+||.+|+...|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|++++.++
T Consensus 30 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILK-DQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEES-TTSCGGGTTCSSSEEEEEEEC----
T ss_pred CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeccCCC
Confidence 46799999533899999999999999999999999999999999999999998 8999999999999999999998766
No 52
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.52 E-value=3.7e-14 Score=126.91 Aligned_cols=80 Identities=13% Similarity=0.190 Sum_probs=70.9
Q ss_pred eccccccccccCCCceeEEeeccCCchhhhHHHHHh------hCCCCCCCCceEEEECCeecCCCCcccccCCCCC--CE
Q 008120 102 LSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIAR------KGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDND--AV 173 (577)
Q Consensus 102 Lsd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~------~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~--sv 173 (577)
..+.|.|+|||.+|+++.++|++++||.+||++|+. +.+++.++++|||+|+|++|+|.++|++|+|+.+ ++
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 345689999999999999999999999999999999 5565446999999999999999999999998765 68
Q ss_pred EEEEEecC
Q 008120 174 IHLLVQKS 181 (577)
Q Consensus 174 I~Lvvrks 181 (577)
|||++|..
T Consensus 93 lhLvlr~~ 100 (116)
T 1wgh_A 93 MHLVARET 100 (116)
T ss_dssp EEEEECSS
T ss_pred EEEEccCC
Confidence 99988744
No 53
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.52 E-value=1.7e-14 Score=122.73 Aligned_cols=75 Identities=20% Similarity=0.342 Sum_probs=71.5
Q ss_pred ccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 103 SDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
...|.|+||+.+|+++.++|++++||.+||++|++..|++ +++|+|+|+|+.|+|+.+|++|+|++|++|||++|
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC--hhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEe
Confidence 4558999999999999999999999999999999999987 99999999999999999999999999999999886
No 54
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.52 E-value=2.3e-14 Score=133.69 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=73.2
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
+..|+|+| +++|++++++|++++||++||++|+..+|+|+++|+|+|+|++|. |+.+|++|||++|++|||++++.||
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~-d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence 56799999 678999999999999999999999999999999999999999999 9999999999999999999999887
Q ss_pred c
Q 008120 106 L 106 (577)
Q Consensus 106 m 106 (577)
.
T Consensus 158 ~ 158 (159)
T 3rt3_B 158 G 158 (159)
T ss_dssp -
T ss_pred C
Confidence 3
No 55
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.27 E-value=1e-15 Score=125.29 Aligned_cols=74 Identities=22% Similarity=0.400 Sum_probs=71.0
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
|+|+| +.+|+++.++|++++||.+||++|++..|+|++.|+|+|+|+.|. |+.+|++|||++|++|+|+++++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELP-NHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 89999 678999999999999999999999999999999999999999998 899999999999999999999875
No 56
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=1.4e-14 Score=123.88 Aligned_cols=78 Identities=19% Similarity=0.243 Sum_probs=71.6
Q ss_pred CCcEEEEE-EeCCe--EEEEEeCCCCCHHHHHHHHHHhh--CCccccEEEEEcCeeccCCCCccccc--cccccccccee
Q 008120 27 SESILIYL-SVSGS--LVPMRVLETDSIESVKLRIQTCK--GFVVKKQKLVFGGRELARNHSLVKDY--GVTGGNVLHLV 99 (577)
Q Consensus 27 ~~sM~I~V-tl~G~--~~~leV~~sdTV~~LK~kI~~~~--Gip~~~QrLif~Gk~L~~D~~tL~dy--gI~dgstL~Lv 99 (577)
...|+|+| +.+|+ .+.++|++++||.+||++|++.+ |+|+++|||+|+|+.|. |+.+|++| +|+++++|||+
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~-D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLL-DHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECC-SSSCHHHHSCSSSCSEEEEEE
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECc-CcCCHHHHhcCCCCCCEEEEE
Confidence 46799999 56676 67888889999999999999998 99999999999999999 89999999 99999999999
Q ss_pred eeeccc
Q 008120 100 LKLSDL 105 (577)
Q Consensus 100 lrLsd~ 105 (577)
+++.++
T Consensus 84 ~~~~gg 89 (93)
T 1wgd_A 84 CNVKSG 89 (93)
T ss_dssp CCCCCC
T ss_pred eCCCCC
Confidence 998765
No 57
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=2e-14 Score=126.16 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120 23 GRSSSESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 23 ~~~~~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
.+.....|+|+| +++|+++.++|.+++||.+||.+|+...|+|+++|+|+|+|+.|. |+.+|++|||++|++|||+++
T Consensus 17 ~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~g~ti~lv~~ 95 (106)
T 1ttn_A 17 PPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLT-DKMKFEELKIPKDYVVQVIVS 95 (106)
T ss_dssp ----CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECC-TTSHHHHCCCSSSCEEEEECC
T ss_pred CCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEe
Confidence 334567899999 578999999999999999999999999999999999999999998 999999999999999999987
Q ss_pred ecc
Q 008120 102 LSD 104 (577)
Q Consensus 102 Lsd 104 (577)
..+
T Consensus 96 ~~~ 98 (106)
T 1ttn_A 96 QPV 98 (106)
T ss_dssp CSS
T ss_pred CCC
Confidence 653
No 58
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=1.3e-14 Score=126.44 Aligned_cols=70 Identities=14% Similarity=0.090 Sum_probs=68.3
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
|.|+|+|.+|+++.++|++++||.+||++|+++.|++ +++|+|+|+|++|+|+.+|++|+|+++++|||+
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip--~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR--WNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCC--GGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--HHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 8999999999999999999999999999999999987 999999999999999999999999999999986
No 59
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=4e-14 Score=123.26 Aligned_cols=81 Identities=23% Similarity=0.281 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120 23 GRSSSESILIYLS-VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 23 ~~~~~~sM~I~Vt-l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
++..+..|+|+|+ .+|+ +.++|++++||.+||++|++..|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+++
T Consensus 16 ~~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~ygI~~gstI~l~~r 93 (100)
T 1yqb_A 16 PRGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIK 93 (100)
T ss_dssp CSCCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBHHHHTCCTTCEEEEEEC
T ss_pred CCCCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHCCCCCCCEEEEEEc
Confidence 3445788999994 6665 799999999999999999999999999999999999998 999999999999999999998
Q ss_pred eccc
Q 008120 102 LSDL 105 (577)
Q Consensus 102 Lsd~ 105 (577)
+.++
T Consensus 94 ~~~~ 97 (100)
T 1yqb_A 94 RQHR 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8654
No 60
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.50 E-value=7.2e-14 Score=114.26 Aligned_cols=72 Identities=24% Similarity=0.401 Sum_probs=67.4
Q ss_pred cEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120 29 SILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 29 sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
+|+|+|+.+|+.+.++|++++||.+||.+|+...|+|++.|+|+|+|+.|. |+.+|++|||++|++|+++.+
T Consensus 4 ~m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 4 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILK-DDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcC-CCCCHHHcCCCCCCEEEEEEc
Confidence 388889448999999999999999999999999999999999999999998 889999999999999998764
No 61
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.7e-14 Score=126.77 Aligned_cols=73 Identities=15% Similarity=0.342 Sum_probs=68.3
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeec
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLS 103 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLs 103 (577)
|+|+| +++|+++.++|++++||.+||.+|+...|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQ-DSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECC-TTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECC-CcCCHHHcCCCCCCEEEEEEcCC
Confidence 89999 579999999999999999999999999999999999999999998 89999999999999999998754
No 62
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.49 E-value=4.5e-14 Score=114.73 Aligned_cols=73 Identities=27% Similarity=0.421 Sum_probs=69.9
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
|+|+|++.+|+.+.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+++++++||+++|.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLAL 73 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 6899999999999999999999999999999999987 999999999999999999999999999999998873
No 63
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.49 E-value=2.6e-14 Score=118.00 Aligned_cols=74 Identities=12% Similarity=0.261 Sum_probs=70.7
Q ss_pred ccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 105 LLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 105 ~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
.|.|+|++.+|+++.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+++|++|+++++++|||+++.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~--~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~ 76 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 76 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCC--cccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEec
Confidence 47899999999999999999999999999999999987 899999999999999999999999999999999874
No 64
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=7.2e-14 Score=125.05 Aligned_cols=77 Identities=21% Similarity=0.253 Sum_probs=69.6
Q ss_pred CCCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHH------hhCC--ccccEEEEEcCeeccCCCCcccccccccc--c
Q 008120 26 SSESILIYL-SVSGSLVPMRVLETDSIESVKLRIQT------CKGF--VVKKQKLVFGGRELARNHSLVKDYGVTGG--N 94 (577)
Q Consensus 26 ~~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~------~~Gi--p~~~QrLif~Gk~L~~D~~tL~dygI~dg--s 94 (577)
+.+.|+|+| ++.|++++++|++++||++||++|++ ++++ |+++|||+|+||+|+ |+.+|++|+|+.+ .
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~Le-D~~TL~~y~I~~~~~~ 91 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFGKTT 91 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEEC-SSCBTTTTTCCSSCEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCC-CCCcHHHcCCCCCCce
Confidence 467899999 68999999999999999999999999 6675 699999999999999 9999999999766 6
Q ss_pred ccceeeeec
Q 008120 95 VLHLVLKLS 103 (577)
Q Consensus 95 tL~LvlrLs 103 (577)
||||++++.
T Consensus 92 tlhLvlr~~ 100 (116)
T 1wgh_A 92 VMHLVARET 100 (116)
T ss_dssp EEEEEECSS
T ss_pred EEEEEccCC
Confidence 789988875
No 65
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.49 E-value=2.5e-14 Score=120.13 Aligned_cols=75 Identities=27% Similarity=0.408 Sum_probs=71.3
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
..|.|+|++.+|+.+.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+.+|++|+|+++++|||++|-
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl 85 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRL 85 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCC
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--HHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 458999999999999999999999999999999999987 999999999999999999999999999999998873
No 66
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.49 E-value=3.9e-14 Score=126.89 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=65.4
Q ss_pred EEEEE--EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccc-------cccccceee
Q 008120 30 ILIYL--SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVT-------GGNVLHLVL 100 (577)
Q Consensus 30 M~I~V--tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~-------dgstL~Lvl 100 (577)
|+++| .....++.++|.+++||.+||.+|+.++|||+++|||+|+|++|. |+.+|++|||+ .++||||++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~Le-D~~TLsdy~I~~~~a~~q~~stL~L~l 79 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECC-CCCCHHHcCcccccccCCCCCEEEEEe
Confidence 45555 333357999999999999999999999999999999999999998 99999999999 799999999
Q ss_pred eeccc
Q 008120 101 KLSDL 105 (577)
Q Consensus 101 rLsd~ 105 (577)
| .|+
T Consensus 80 r-~~g 83 (118)
T 2fnj_B 80 R-ADD 83 (118)
T ss_dssp B-SSS
T ss_pred c-CCC
Confidence 8 443
No 67
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=5.5e-14 Score=120.88 Aligned_cols=73 Identities=18% Similarity=0.408 Sum_probs=68.9
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHh---hCCccccEEEEEcCeeccCCCCcccccccccccccceeeeec
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTC---KGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLS 103 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~---~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLs 103 (577)
|+|+| +.+|+.+.++|++++||.+||.+|+.. +|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+++..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILN-DDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECC-TTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECC-CcCcHHHCCCCCCCEEEEEEeCC
Confidence 89999 578999999999999999999999999 899999999999999998 89999999999999999988753
No 68
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.49 E-value=4.3e-14 Score=120.97 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=71.0
Q ss_pred ccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecC
Q 008120 105 LLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKS 181 (577)
Q Consensus 105 ~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks 181 (577)
+|.|+|++.+|+.+.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+|+++++|||++|..
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~ 75 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 75 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC--hhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcC
Confidence 48999999999999999999999999999999999987 9999999999999999999999999999999998743
No 69
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=2.6e-14 Score=122.78 Aligned_cols=78 Identities=17% Similarity=0.290 Sum_probs=72.9
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 27 SESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 27 ~~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
...|+|+|+..|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|||++++.++
T Consensus 15 ~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 15 SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILR-DQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECC-TTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred CCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC-CcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 56799999544999999999999999999999999999999999999999998 9999999999999999999988765
No 70
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.49 E-value=2.7e-14 Score=120.98 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=71.1
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecC
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKS 181 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks 181 (577)
..|.|+|++.+|+.+.++|++++||.+||++|+...+++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|+++..
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~ 78 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSC--TTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC--
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCC--hhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcC
Confidence 468999999999999999999999999999999999987 9999999999999999999999999999999998744
No 71
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.48 E-value=5.6e-14 Score=125.65 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=67.6
Q ss_pred EEEEE--EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCccccccccc-------ccccceee
Q 008120 30 ILIYL--SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTG-------GNVLHLVL 100 (577)
Q Consensus 30 M~I~V--tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~d-------gstL~Lvl 100 (577)
|.+|| +....++.++|.+++||.+||++|+..+|+|+++|||+|+|+.|. |+.||++|||++ ++||||++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~Le-D~kTL~dy~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECC-CcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence 55666 455678999999999999999999999999999999999999998 999999999999 99999999
Q ss_pred eecc
Q 008120 101 KLSD 104 (577)
Q Consensus 101 rLsd 104 (577)
|..|
T Consensus 80 r~~~ 83 (118)
T 4ajy_B 80 RADD 83 (118)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 9743
No 72
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.48 E-value=7.4e-14 Score=123.56 Aligned_cols=78 Identities=31% Similarity=0.577 Sum_probs=73.1
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
...|+|+| +.+|+.+.++|++++||.+||.+|++..|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|++++.||
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECC-SSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 46799999 468999999999999999999999999999999999999999998 8999999999999999999998775
No 73
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.48 E-value=3.7e-14 Score=125.41 Aligned_cols=78 Identities=22% Similarity=0.262 Sum_probs=73.6
Q ss_pred CCcEEEEE-Ee---CCeEEEEEeCC-CCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120 27 SESILIYL-SV---SGSLVPMRVLE-TDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 27 ~~sM~I~V-tl---~G~~~~leV~~-sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
+..|+|+| +. +|+.+.++|++ ++||.+||++|+..+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+++
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~-D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLK-DNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCC-TTSBTTTTTCSSSCEEEEECS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECC-CCCcHHHCCCCCCCEEEEEEE
Confidence 46799999 55 78999999998 99999999999999999999999999999998 999999999999999999999
Q ss_pred eccc
Q 008120 102 LSDL 105 (577)
Q Consensus 102 Lsd~ 105 (577)
+.++
T Consensus 104 ~~GG 107 (111)
T 1we6_A 104 ERSG 107 (111)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 9877
No 74
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.47 E-value=5.4e-14 Score=121.54 Aligned_cols=77 Identities=12% Similarity=0.252 Sum_probs=72.3
Q ss_pred eccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 102 LSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 102 Lsd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
.+..|.|+|++.+|+++.++|++++||..||++|+.+.|++ +++|+|+|+|+.|+|.++|++|+|+++++|||++|.
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip--~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~ 94 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 94 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESS
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--hhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEec
Confidence 34568999999999999999999999999999999999987 999999999999999999999999999999999874
No 75
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=5.6e-14 Score=117.08 Aligned_cols=74 Identities=22% Similarity=0.327 Sum_probs=70.4
Q ss_pred ccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 105 LLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 105 ~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
.|.|+|++.+|+++.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+.+|++|+|+++++|||++|.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl 76 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKL 76 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEec
Confidence 47899999999999999999999999999999999987 999999999999999999999999999999999873
No 76
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=8e-14 Score=117.06 Aligned_cols=75 Identities=17% Similarity=0.111 Sum_probs=71.5
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
..|.|+|++.+|+.+.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+|+++++|||++|.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLP--KKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCC--TTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECS
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCC--hHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEec
Confidence 458999999999999999999999999999999999987 999999999999999999999999999999999873
No 77
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=6.1e-14 Score=115.82 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=70.7
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
..|.|+|++.+|+.+.++|+++.||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|++++|++|||++|.
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVP--VRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCC--TTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 458999999999999999999999999999999999987 999999999999999999999999999999998763
No 78
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=5.5e-14 Score=119.20 Aligned_cols=75 Identities=21% Similarity=0.343 Sum_probs=69.5
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
.+|+|+|++.+|+++.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+++++++|+|++|.
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~ 82 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 82 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC--
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 479999999999999999999999999999999999987 999999999999999999999999999999998873
No 79
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.47 E-value=8.1e-14 Score=113.22 Aligned_cols=73 Identities=22% Similarity=0.372 Sum_probs=69.8
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
|+|+|++.+|+.+.++|+++.||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+++++++||+++|.
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRL 73 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 6899999999999999999999999999999999987 999999999999999999999999999999998873
No 80
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=120.03 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=71.7
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 27 SESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 27 ~~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
...|+|+|+..|+.+.++|++++||.+||.+|+...|+|++.|+|+|+|+.|. |+.+|++|||++|++|+|++++..
T Consensus 23 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 23 PKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILK-DQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEEC-TTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHcCCCCCCEEEEEEcCCC
Confidence 57799999544889999999999999999999999999999999999999998 999999999999999999988753
No 81
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.47 E-value=7.6e-14 Score=121.68 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=70.6
Q ss_pred CCcEEEEE-EeCC----eEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120 27 SESILIYL-SVSG----SLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 27 ~~sM~I~V-tl~G----~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
...|+|+| ...+ +++.++|++++||.+||++|++.+|+|+++|+|+|+|++|.||+.+|++|||++|++|+|+.+
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 45699999 4433 799999999999999999999999999999999999999994447999999999999999998
Q ss_pred eccc
Q 008120 102 LSDL 105 (577)
Q Consensus 102 Lsd~ 105 (577)
..++
T Consensus 85 ~~gg 88 (102)
T 1v5o_A 85 DNVG 88 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8765
No 82
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=1.1e-13 Score=116.84 Aligned_cols=76 Identities=24% Similarity=0.258 Sum_probs=71.1
Q ss_pred cccccccccCCC-ceeEE-eeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecC
Q 008120 104 DLLLITVRTSCG-KELEF-HIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKS 181 (577)
Q Consensus 104 d~m~I~Vrt~~G-k~~~i-~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks 181 (577)
..|.|+|++.+| +.+.+ +|++++||.+||++|+...+++ +++|+|+|+|+.|+|+.+|++|+|+++++|||++|..
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR--PECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC--TTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcC--hhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCC
Confidence 458999999999 69999 5999999999999999999987 9999999999999999999999999999999998843
No 83
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=5.1e-14 Score=121.76 Aligned_cols=76 Identities=21% Similarity=0.359 Sum_probs=71.1
Q ss_pred ccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 103 SDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
...|+|+||+.+|+++.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|.
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 95 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCC--hhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 4458999999999999999999999999999999999987 999999999999999999999999999999999873
No 84
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.46 E-value=1.1e-13 Score=125.38 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=71.2
Q ss_pred CCcEEEEE-EeCCeEE-EEEeCCCCCHHHHHHHH-----HHhhCCcc--ccEEEEEcCeeccCCCCcccccccccc----
Q 008120 27 SESILIYL-SVSGSLV-PMRVLETDSIESVKLRI-----QTCKGFVV--KKQKLVFGGRELARNHSLVKDYGVTGG---- 93 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~-~leV~~sdTV~~LK~kI-----~~~~Gip~--~~QrLif~Gk~L~~D~~tL~dygI~dg---- 93 (577)
.+.|+|+| +++|+.+ ++++++++||.+||++| +..+|+|+ ++|||+|+||.|+ |+.+|++|+|+.|
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~Le-D~~TLsdy~I~~~~~~~ 92 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLE-NSKTVKDYRSPVSNLAG 92 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECC-TTSBGGGGSCCTTSCTT
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECc-CCCcHHHcCCCcCCccC
Confidence 58899999 7899777 79999999999999999 56778986 8999999999999 9999999999998
Q ss_pred --cccceeeeeccc
Q 008120 94 --NVLHLVLKLSDL 105 (577)
Q Consensus 94 --stL~LvlrLsd~ 105 (577)
+|+||++++.++
T Consensus 93 ~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 93 AVTTMHVIIQAPVT 106 (126)
T ss_dssp CCEEEEEEECCCSS
T ss_pred CcEEEEEEeccCCc
Confidence 689999998865
No 85
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=9e-14 Score=115.66 Aligned_cols=74 Identities=22% Similarity=0.308 Sum_probs=70.7
Q ss_pred ccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 105 LLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 105 ~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
.|.|+|++.+|+++.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~ 76 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRL 76 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEEC
Confidence 47899999999999999999999999999999999987 999999999999999999999999999999999873
No 86
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=8.6e-14 Score=122.15 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=73.7
Q ss_pred ccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecCC
Q 008120 103 SDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSA 182 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks~ 182 (577)
...|.|+||+.+|+.+.++|++++||.+||++|+.+.|++ +++|+|+|+|+.|+|+.+|++|+|++|++|||+++++.
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~ 98 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVE--PGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV 98 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCC--STTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcC--cccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 3458999999999999999999999999999999999987 99999999999999999999999999999999988665
Q ss_pred C
Q 008120 183 K 183 (577)
Q Consensus 183 k 183 (577)
.
T Consensus 99 ~ 99 (106)
T 1ttn_A 99 Q 99 (106)
T ss_dssp C
T ss_pred C
Confidence 4
No 87
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.45 E-value=1.1e-13 Score=125.27 Aligned_cols=80 Identities=19% Similarity=0.336 Sum_probs=70.3
Q ss_pred eeccccccccccCCCcee-EEeeccCCchhhhHHHH-----HhhCCCCCCCCceEEEECCeecCCCCcccccCCCCC---
Q 008120 101 KLSDLLLITVRTSCGKEL-EFHIDRYRNVGYLKQRI-----ARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDND--- 171 (577)
Q Consensus 101 rLsd~m~I~Vrt~~Gk~~-~i~Vd~~~TV~~LK~kI-----~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~--- 171 (577)
...+.|.|+|||.+|+.+ .+++++++||.+||++| +.+.++|.++++|||+|+|++|+|.++|++|+|+.+
T Consensus 12 ~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~ 91 (126)
T 1se9_A 12 EVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLA 91 (126)
T ss_dssp SSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCT
T ss_pred hhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCcc
Confidence 345789999999999999 69999999999999999 456677633489999999999999999999999988
Q ss_pred ---CEEEEEEec
Q 008120 172 ---AVIHLLVQK 180 (577)
Q Consensus 172 ---svI~Lvvrk 180 (577)
+++||++|-
T Consensus 92 ~~v~tmhlVlrl 103 (126)
T 1se9_A 92 GAVTTMHVIIQA 103 (126)
T ss_dssp TCCEEEEEEECC
T ss_pred CCcEEEEEEecc
Confidence 689999873
No 88
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=125.32 Aligned_cols=78 Identities=21% Similarity=0.223 Sum_probs=69.8
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHH------hhCC--ccccEEEEEcCeeccCCCCccccccccccc--c
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQT------CKGF--VVKKQKLVFGGRELARNHSLVKDYGVTGGN--V 95 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~------~~Gi--p~~~QrLif~Gk~L~~D~~tL~dygI~dgs--t 95 (577)
...|+|+| +++|++++++|++++||++||++|+. ++|+ ++++|||+|+||+|+ |+.+|++|+|+.++ |
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~Le-D~~TL~~y~I~~~~~~t 93 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFGKTTV 93 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEE-SSCBTGGGCCCTTSEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCC-CCCcHHHcCCCCCCceE
Confidence 55699999 67899999999999999999999999 7788 489999999999999 99999999999665 7
Q ss_pred cceeeeeccc
Q 008120 96 LHLVLKLSDL 105 (577)
Q Consensus 96 L~LvlrLsd~ 105 (577)
|||++++...
T Consensus 94 lhlv~r~~~~ 103 (125)
T 2gow_A 94 MHLVARETLP 103 (125)
T ss_dssp EEEEECSCCS
T ss_pred EEEEecCCCC
Confidence 8999888643
No 89
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=1.8e-13 Score=119.96 Aligned_cols=77 Identities=22% Similarity=0.271 Sum_probs=71.1
Q ss_pred CCcEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 27 SESILIYLS-VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 27 ~~sM~I~Vt-l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
...|+|+|+ ..|+ +.++|++++||.+||++|++.+|+++++|+|+|+|+.|. |+.+|++|||++|++|+|++++.++
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECC-TTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 566999995 5665 799999999999999999999999999999999999998 9999999999999999999998765
No 90
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.44 E-value=1.8e-13 Score=111.91 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=67.8
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
|.|+|++ +|+.+.++|+++.||.+||++|+...|++ +++|+|+|+|+.|+|+.+|++|++++|++|||+.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP--VANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCC--HHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 7899999 99999999999999999999999999987 99999999999999999999999999999999764
No 91
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.44 E-value=8.2e-15 Score=132.99 Aligned_cols=76 Identities=30% Similarity=0.616 Sum_probs=0.4
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecccc
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLL 106 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~m 106 (577)
|+|+| +++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|++|. |+.+|++|||++|++|+|++++.++.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp -----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECC-CCCchhhhccCCCCEEEEEEEcCCCC
Confidence 89999 688999999999999999999999999999999999999999998 99999999999999999999998773
No 92
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=4.6e-14 Score=123.02 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=65.4
Q ss_pred cEEEEE-EeC--CeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 29 SILIYL-SVS--GSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 29 sM~I~V-tl~--G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
+++|++ .-. ++.++++|++++||.+||++|++++|+|+++|+|+|+||+|. |+.+|++|+|++|++| +++++++
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~-D~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQ-LGKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECC-TTSBHHHHTCCSSEEE-EEECCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECC-CCCcHHHcCCCCCCEE-EEEEECC
Confidence 456665 212 689999999999999999999999999999999999999999 9999999999999999 6666654
No 93
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.44 E-value=1.8e-13 Score=117.73 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=71.6
Q ss_pred eccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCC-CcccccCCCCCCEEEEEEec
Q 008120 102 LSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQ-RLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 102 Lsd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~-~tLsdy~I~~~svI~Lvvrk 180 (577)
....|.|+||+.+| ++.++|++++||.+||++|+.+.|++ +++|+|+|+|+.|+|+ .+|++|+|+++++|+|++|.
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTP--IKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSC--TTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 35568999999988 89999999999999999999999987 9999999999999999 99999999999999999874
Q ss_pred C
Q 008120 181 S 181 (577)
Q Consensus 181 s 181 (577)
.
T Consensus 89 ~ 89 (94)
T 2kan_A 89 I 89 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 94
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=1.5e-13 Score=117.52 Aligned_cols=75 Identities=25% Similarity=0.366 Sum_probs=68.3
Q ss_pred cccccccccCCCc--eeEEeeccCCchhhhHHHHHhhC--CCCCCCCceEEEECCeecCCCCccccc--CCCCCCEEEEE
Q 008120 104 DLLLITVRTSCGK--ELEFHIDRYRNVGYLKQRIARKG--KGFVDVVDQEIFCDGEKLDDQRLIDDI--CKDNDAVIHLL 177 (577)
Q Consensus 104 d~m~I~Vrt~~Gk--~~~i~Vd~~~TV~~LK~kI~~~~--gi~~p~~~QrLif~Gr~LeD~~tLsdy--~I~~~svI~Lv 177 (577)
..|.|+||+.+|+ .+.++|++++||.+||++|+++. +++ +++|+|+|+|+.|+|+.+|++| +|+++++|||+
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~--~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPR--PEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCC--TTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCC--hHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEE
Confidence 3588999999998 56677779999999999999998 876 9999999999999999999999 99999999998
Q ss_pred Eec
Q 008120 178 VQK 180 (577)
Q Consensus 178 vrk 180 (577)
++.
T Consensus 84 ~~~ 86 (93)
T 1wgd_A 84 CNV 86 (93)
T ss_dssp CCC
T ss_pred eCC
Confidence 873
No 95
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.44 E-value=1.5e-13 Score=130.05 Aligned_cols=78 Identities=31% Similarity=0.591 Sum_probs=70.4
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
...|+|+| +.+|++++++|++++||.+||.+|+..+|+|+++|+|+|+|++|. |+.+|++|||++|++|||+++++||
T Consensus 94 ~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~-D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 94 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp CCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTSBSGGGTCCTTCEEEECC-----
T ss_pred cccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCC-CCCcHHHhCCCCCCEEEEEEecCCC
Confidence 46799999 689999999999999999999999999999999999999999999 9999999999999999999999875
No 96
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.43 E-value=1.7e-13 Score=118.42 Aligned_cols=75 Identities=11% Similarity=0.099 Sum_probs=70.1
Q ss_pred CCcEEEEEEeCCeEE-EEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeec
Q 008120 27 SESILIYLSVSGSLV-PMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLS 103 (577)
Q Consensus 27 ~~sM~I~Vtl~G~~~-~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLs 103 (577)
.+.|+|+|+..|+++ .++|++++||.+||++|++.+|+|+++|||+|.|+.|. |+ +|++|||++|++|+|+....
T Consensus 5 ~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~-D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 5 SSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK-DD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECC-SS-CCCSCCCCSSCEEECCCCCC
T ss_pred CcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCC-CC-CHHHCCCCCCCEEEEEecch
Confidence 567999998889999 69999999999999999999999999999999999998 77 99999999999999987654
No 97
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.43 E-value=1.4e-13 Score=117.29 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=71.3
Q ss_pred CCcEEEEEEeCCeEEEE-EeCCCCCHHHHHHHHHHhhCCccccEEEE---EcCeeccCCCCcccccccccccccceeeee
Q 008120 27 SESILIYLSVSGSLVPM-RVLETDSIESVKLRIQTCKGFVVKKQKLV---FGGRELARNHSLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 27 ~~sM~I~Vtl~G~~~~l-eV~~sdTV~~LK~kI~~~~Gip~~~QrLi---f~Gk~L~~D~~tL~dygI~dgstL~LvlrL 102 (577)
...|+|+|+..|+++.+ +|++++||.+||++|++.+|+|+++|||+ |.|++|. |+.+|++|||++|++|+|+...
T Consensus 5 ~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~-D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 5 SSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAE-NDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECC-TTSBHHHHTCCTTEEEEEECCC
T ss_pred CceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcC-CCCCHHHcCCCCCCEEEEEecC
Confidence 56799999889999999 99999999999999999999999999999 9999998 8999999999999999998754
Q ss_pred c
Q 008120 103 S 103 (577)
Q Consensus 103 s 103 (577)
.
T Consensus 84 ~ 84 (90)
T 1v5t_A 84 E 84 (90)
T ss_dssp S
T ss_pred c
Confidence 3
No 98
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.42 E-value=3.9e-13 Score=118.16 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=67.2
Q ss_pred CCcEEEEE-EeC--CeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCccccccc-ccccccceeee
Q 008120 27 SESILIYL-SVS--GSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGV-TGGNVLHLVLK 101 (577)
Q Consensus 27 ~~sM~I~V-tl~--G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI-~dgstL~Lvlr 101 (577)
+-.|+|+| ... +..++++|.|++||++||++|++++|+|+++|||+|+|+.+. |+.+|++||| ++|+++||++-
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~-D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLAR-DQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC-TTCBTGGGTCCSTTCEEEEEEC
T ss_pred cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEcc-CcCcHHHcCCCCCCCEEEEEEE
Confidence 55688888 555 479999999999999999999999999999999999999887 9999999999 59999999874
No 99
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=2.4e-13 Score=118.32 Aligned_cols=80 Identities=19% Similarity=0.302 Sum_probs=73.1
Q ss_pred eeccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 101 KLSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 101 rLsd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
..+..|.|+|++.+|+ +.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|.
T Consensus 18 ~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~ 94 (100)
T 1yqb_A 18 GSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR 94 (100)
T ss_dssp CCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECC
T ss_pred CCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcC
Confidence 3456699999999986 7999999999999999999999987 999999999999999999999999999999999885
Q ss_pred CCC
Q 008120 181 SAK 183 (577)
Q Consensus 181 s~k 183 (577)
...
T Consensus 95 ~~~ 97 (100)
T 1yqb_A 95 QHR 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 100
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.42 E-value=2.7e-13 Score=120.05 Aligned_cols=75 Identities=21% Similarity=0.341 Sum_probs=71.4
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
..|+|+|++.+|+.+.++|+++.||.+||++|+++.+++ +++|+|+|+|+.|+|..+|++|+|+++++|||++|-
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECC
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCC--hHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 358999999999999999999999999999999999987 999999999999999999999999999999999873
No 101
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.42 E-value=3.8e-13 Score=115.94 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=70.6
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecC
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKS 181 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks 181 (577)
|+|+||+.+|+.+.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|+++..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 74 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 7899999999999999999999999999999999987 9999999999999999999999999999999998743
No 102
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.13 E-value=1.5e-14 Score=118.43 Aligned_cols=73 Identities=12% Similarity=0.259 Sum_probs=70.0
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
|+|+||+.+|+++.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|++++|++|||++|-
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rl 73 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVP--ADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRP 73 (76)
Confidence 7899999999999999999999999999999999987 999999999999999999999999999999998873
No 103
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.42 E-value=2.6e-13 Score=123.03 Aligned_cols=79 Identities=13% Similarity=0.198 Sum_probs=70.3
Q ss_pred ccccccccccCCCceeEEeeccCCchhhhHHHHHh------hCCCCCCCCceEEEECCeecCCCCcccccCCCCCC--EE
Q 008120 103 SDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIAR------KGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDA--VI 174 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~------~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~s--vI 174 (577)
...|.|+|||.+|+++.++|++++||.+||++|+. +++++.++++|+|+|+|++|+|.++|++|+|+.++ +|
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 44589999999999999999999999999999999 66765458999999999999999999999998766 78
Q ss_pred EEEEecC
Q 008120 175 HLLVQKS 181 (577)
Q Consensus 175 ~Lvvrks 181 (577)
||++|..
T Consensus 95 hlv~r~~ 101 (125)
T 2gow_A 95 HLVARET 101 (125)
T ss_dssp EEEECSC
T ss_pred EEEecCC
Confidence 9988743
No 104
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=2.6e-13 Score=118.28 Aligned_cols=65 Identities=11% Similarity=-0.009 Sum_probs=59.8
Q ss_pred CceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecC
Q 008120 115 GKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKS 181 (577)
Q Consensus 115 Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks 181 (577)
++++.++|++++||.+||++|+++.|+| +++|+|+|+|++|+|+++|++|+|+++++|+++.-|.
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip--~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lrg 93 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQ--ENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQ 93 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCC--STTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcC--HHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEECC
Confidence 7899999999999999999999999987 9999999999999999999999999999995543343
No 105
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.42 E-value=5.1e-13 Score=112.72 Aligned_cols=75 Identities=25% Similarity=0.411 Sum_probs=69.5
Q ss_pred CCCcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120 26 SSESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 26 ~~~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
+-..+.+.++++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|++|. |+.+|++|||++|++|+|+.+
T Consensus 9 ~~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 9 SHSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLV-ETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp SCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECC-TTCBTTTTTCCTTEEEEEECC
T ss_pred cCCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECC-CcCCHHHCCCCCCCEEEEEEe
Confidence 355677777999999999999999999999999999999999999999999998 999999999999999998764
No 106
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=117.59 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=67.7
Q ss_pred eccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 102 LSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 102 Lsd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
+...|+|+|++ |+++.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|
T Consensus 16 ~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 16 PRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIA--PEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp ----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCC--GGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECC
T ss_pred CCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcC--hhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 34568999998 8999999999999999999999999987 99999999999999999999999999999999887
No 107
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=4.1e-13 Score=114.41 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=69.6
Q ss_pred CCcEEEEEEeCCeEEEEEeCCC-----CCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120 27 SESILIYLSVSGSLVPMRVLET-----DSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 27 ~~sM~I~Vtl~G~~~~leV~~s-----dTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
...|+|+|+..|+.+.++|+++ +||.+||++|++.+|+|+++|+|+|+|+.|.+|+.+|++|||++|++|+|+.+
T Consensus 5 ~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 5 SSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp CSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 5679999976789999999996 99999999999999999999999999999994477999999999999999875
Q ss_pred e
Q 008120 102 L 102 (577)
Q Consensus 102 L 102 (577)
.
T Consensus 85 ~ 85 (92)
T 1wxv_A 85 K 85 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 108
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.41 E-value=3.7e-13 Score=119.79 Aligned_cols=79 Identities=25% Similarity=0.383 Sum_probs=72.4
Q ss_pred CCcEEEEEEe-----------CCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccc
Q 008120 27 SESILIYLSV-----------SGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNV 95 (577)
Q Consensus 27 ~~sM~I~Vtl-----------~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgst 95 (577)
+..|+|+|+. +|+++.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|||++|++
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~-D~~tL~~y~i~~g~~ 101 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIK-DSNSLAYYNMASGAV 101 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEEC-TTSBHHHHTCCSSCE
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECC-CCCCHHHCCCCCCCE
Confidence 3568888842 4789999999999999999999999999999999999999998 999999999999999
Q ss_pred cceeeeecccc
Q 008120 96 LHLVLKLSDLL 106 (577)
Q Consensus 96 L~LvlrLsd~m 106 (577)
|||++++.++.
T Consensus 102 i~lv~rl~GGk 112 (115)
T 1we7_A 102 IHLALKERSGP 112 (115)
T ss_dssp EEEEECCCSCC
T ss_pred EEEEEEcCCCC
Confidence 99999998873
No 109
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.41 E-value=4.6e-13 Score=118.47 Aligned_cols=75 Identities=21% Similarity=0.341 Sum_probs=71.3
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
..|.|+|++.+|+.+.++|+++.||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+++++++|||++|.
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC--TTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC--cccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 358999999999999999999999999999999999987 999999999999999999999999999999999873
No 110
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.41 E-value=4.4e-13 Score=116.79 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=71.7
Q ss_pred eccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecC
Q 008120 102 LSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKS 181 (577)
Q Consensus 102 Lsd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks 181 (577)
-...|.|+|++. |+.+.++|++++||.+||++|+...|++ +++|+|+|+|+.|+|+.+|++|+|++|++|+|+++.+
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSH--TDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCC--GGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 345689999998 8999999999999999999999999987 9999999999999999999999999999999998755
Q ss_pred C
Q 008120 182 A 182 (577)
Q Consensus 182 ~ 182 (577)
.
T Consensus 99 ~ 99 (101)
T 2klc_A 99 N 99 (101)
T ss_dssp S
T ss_pred C
Confidence 4
No 111
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.41 E-value=1.9e-14 Score=134.64 Aligned_cols=76 Identities=30% Similarity=0.585 Sum_probs=0.0
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecccc
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLL 106 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~m 106 (577)
|+|+| +++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|++|. |+.+|++|||++|++|+|++++.++-
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEcc-ccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999 678999999999999999999999999999999999999999999 99999999999999999999998863
No 112
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.41 E-value=2e-13 Score=122.09 Aligned_cols=73 Identities=16% Similarity=0.102 Sum_probs=67.7
Q ss_pred cccccccCCCc-eeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCC-------CCEEEEE
Q 008120 106 LLITVRTSCGK-ELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDN-------DAVIHLL 177 (577)
Q Consensus 106 m~I~Vrt~~Gk-~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~-------~svI~Lv 177 (577)
|.+|++...++ ++.++|++++||.+||++|+.+.|++ +++|||+|+|+.|+|.+||++|+|++ +++|||+
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giP--p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lv 78 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRP--PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCC--HHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEE
Confidence 56777877777 77889999999999999999999987 99999999999999999999999999 9999999
Q ss_pred Eec
Q 008120 178 VQK 180 (577)
Q Consensus 178 vrk 180 (577)
+|.
T Consensus 79 lr~ 81 (118)
T 4ajy_B 79 FRA 81 (118)
T ss_dssp ECC
T ss_pred Eec
Confidence 985
No 113
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=119.47 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=65.7
Q ss_pred cccccccccCCCc--eeEEeeccCCchhhhHHHHHhh-CCCCCCCCceEEEECCeecCCCCccccc--CCCCCCEEEEE
Q 008120 104 DLLLITVRTSCGK--ELEFHIDRYRNVGYLKQRIARK-GKGFVDVVDQEIFCDGEKLDDQRLIDDI--CKDNDAVIHLL 177 (577)
Q Consensus 104 d~m~I~Vrt~~Gk--~~~i~Vd~~~TV~~LK~kI~~~-~gi~~p~~~QrLif~Gr~LeD~~tLsdy--~I~~~svI~Lv 177 (577)
..|.|+||+.+|+ .+.++|++++||.+||++|+++ .+.+ |+++|||+|+|+.|+|.++|++| +|+++++|||+
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~p-p~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKP-LTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCC-CTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCC-ChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 4589999999998 6789999999999999999986 4555 46999999999999999999999 99999999984
No 114
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=8.2e-14 Score=122.61 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=69.6
Q ss_pred ccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCC---------------CceEEEECCeecC-CCCcccccCC
Q 008120 105 LLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDV---------------VDQEIFCDGEKLD-DQRLIDDICK 168 (577)
Q Consensus 105 ~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~---------------~~QrLif~Gr~Le-D~~tLsdy~I 168 (577)
.|.|+|++.+|+++.++|++++||.+||++|+++.+++ + ++|+|+|+|++|. |..+|++|+|
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~--~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLK--QEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHH--HHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 38999999999999999999999999999999999875 4 4689999999996 6799999999
Q ss_pred CCCCEEEEEEecCCC
Q 008120 169 DNDAVIHLLVQKSAK 183 (577)
Q Consensus 169 ~~~svI~Lvvrks~k 183 (577)
+++++|||+.+...+
T Consensus 85 ~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQK 99 (105)
T ss_dssp CSSEEEEEEECSCSC
T ss_pred CCCCEEEEEehhccC
Confidence 999999999885443
No 115
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.40 E-value=3.8e-13 Score=115.30 Aligned_cols=78 Identities=17% Similarity=0.153 Sum_probs=70.7
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCC-CcccccCCCCCCEEEEEEecCC
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQ-RLIDDICKDNDAVIHLLVQKSA 182 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~-~tLsdy~I~~~svI~Lvvrks~ 182 (577)
..|.|+|++.+|+.+.++|++++||.+||++|+... +++|+|+|+|+.|+|+ ++|++|+|+++++|||+++++.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~-----~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ-----ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST-----TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC-----cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 358999999999999999999999999999999986 5899999999999999 9999999999999999988665
Q ss_pred CccC
Q 008120 183 KVRA 186 (577)
Q Consensus 183 k~~~ 186 (577)
..+.
T Consensus 81 ~~~~ 84 (95)
T 1wia_A 81 AAVS 84 (95)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 4433
No 116
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.39 E-value=7.3e-13 Score=121.61 Aligned_cols=78 Identities=31% Similarity=0.591 Sum_probs=73.3
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
...|+|+| +.+|+++.++|++++||.+||.+|+...|+|++.|+|+|+|+.|. |+.+|++|||++|++|+|++++.||
T Consensus 74 ~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 74 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp TTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred ccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence 45699999 688999999999999999999999999999999999999999998 9999999999999999999998875
No 117
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.39 E-value=2.2e-13 Score=122.04 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=66.0
Q ss_pred cccccccCCCc-eeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCC-------CCCEEEEE
Q 008120 106 LLITVRTSCGK-ELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKD-------NDAVIHLL 177 (577)
Q Consensus 106 m~I~Vrt~~Gk-~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~-------~~svI~Lv 177 (577)
|.++|++..|+ ++.++|++++||.+||++|+.+.|++ +++|||+|+|+.|+|.++|++|+|+ ++++|||+
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP--~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~ 78 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRP--PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCC--HHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEE
Confidence 45666766676 58899999999999999999999987 9999999999999999999999999 79999999
Q ss_pred Ee
Q 008120 178 VQ 179 (577)
Q Consensus 178 vr 179 (577)
+|
T Consensus 79 lr 80 (118)
T 2fnj_B 79 FR 80 (118)
T ss_dssp EB
T ss_pred ec
Confidence 98
No 118
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.39 E-value=2.1e-13 Score=118.78 Aligned_cols=73 Identities=19% Similarity=0.294 Sum_probs=63.3
Q ss_pred CCCcEEEEE-EeCCe--EEEEEeCCCCCHHHHHHHHHHh-hCCc-cccEEEEEcCeeccCCCCccccc--ccccccccce
Q 008120 26 SSESILIYL-SVSGS--LVPMRVLETDSIESVKLRIQTC-KGFV-VKKQKLVFGGRELARNHSLVKDY--GVTGGNVLHL 98 (577)
Q Consensus 26 ~~~sM~I~V-tl~G~--~~~leV~~sdTV~~LK~kI~~~-~Gip-~~~QrLif~Gk~L~~D~~tL~dy--gI~dgstL~L 98 (577)
+...|+|+| +.+|+ .++++|++++||.+||++|++. .|+| +++|||+|+||+|+ |+.+|++| +|+++++|||
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~-D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLP-DHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEEC-TTSBTHHHHTTTCSEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECC-CCCCHHHHhcCCCCCCEEEe
Confidence 356799999 56776 6799999999999999999986 5666 59999999999999 99999999 9999999997
Q ss_pred e
Q 008120 99 V 99 (577)
Q Consensus 99 v 99 (577)
+
T Consensus 99 v 99 (99)
T 2kdb_A 99 V 99 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 119
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.39 E-value=4.9e-13 Score=127.03 Aligned_cols=73 Identities=22% Similarity=0.383 Sum_probs=70.5
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
|+|+||+.+|+++.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+++|++|+|+++++|||++|.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl 73 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC--TTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC--HHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEe
Confidence 7899999999999999999999999999999999987 999999999999999999999999999999999884
No 120
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.39 E-value=5.5e-13 Score=117.88 Aligned_cols=76 Identities=20% Similarity=0.191 Sum_probs=72.0
Q ss_pred eccccccccccC---CCceeEEeecc-CCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 102 LSDLLLITVRTS---CGKELEFHIDR-YRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 102 Lsd~m~I~Vrt~---~Gk~~~i~Vd~-~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
..+.|.|+|++. +|+.+.++|++ ++||.+||++|+...+++ +++|+|+|+|+.|+|+.+|++|+|+++++|||+
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip--~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~ 101 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIP--ANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLS 101 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCC--TTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEE
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEECCCCCcHHHCCCCCCCEEEEE
Confidence 456789999998 89999999998 999999999999999987 999999999999999999999999999999999
Q ss_pred Ee
Q 008120 178 VQ 179 (577)
Q Consensus 178 vr 179 (577)
+|
T Consensus 102 ~r 103 (111)
T 1we6_A 102 LR 103 (111)
T ss_dssp CS
T ss_pred EE
Confidence 87
No 121
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=6e-13 Score=114.07 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=69.0
Q ss_pred CCCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCC-Ccccccccccccccceeeeec
Q 008120 26 SSESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNH-SLVKDYGVTGGNVLHLVLKLS 103 (577)
Q Consensus 26 ~~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~-~tL~dygI~dgstL~LvlrLs 103 (577)
+...|+|+| +..|+.+.++|++++||.+||++|+... +++|+|+|+|+.|. |+ .+|++|||++|++|||+++..
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~-D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQ-DPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECC-CSSCBTTTTTCCTTEEEEEECCCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEcc-CCcCCHHHcCCCCCCEEEEEECCC
Confidence 467899999 6789999999999999999999999988 79999999999999 77 999999999999999998765
Q ss_pred c
Q 008120 104 D 104 (577)
Q Consensus 104 d 104 (577)
.
T Consensus 80 ~ 80 (95)
T 1wia_A 80 G 80 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 122
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=6.7e-13 Score=116.29 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=70.7
Q ss_pred ccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecCC
Q 008120 103 SDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSA 182 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks~ 182 (577)
...|.|+|++.+|+ +.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+++|++|+|+++++|||+++...
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCC--TTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 34589999998886 7999999999999999999999987 99999999999999999999999999999999987544
No 123
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=3.3e-13 Score=115.84 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=70.3
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecC
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKS 181 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks 181 (577)
..|.|+|++. |+.+.++|++++||.+||++|+...+++ +++|+|+|+|+.|+|+++|++|+|+++++|||+++..
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 90 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCN--ADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSH 90 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSC--TTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCS
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCC
Confidence 4589999998 9999999999999999999999999987 9999999999999999999999999999999988743
No 124
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=5.6e-13 Score=114.85 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=69.0
Q ss_pred CCCcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeee
Q 008120 26 SSESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 26 ~~~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrL 102 (577)
....|+|+|+..|+++.++|++++||.+||++|+..+|+|+++|+|+|.|++|. |. +|++|+|+++++|+|+.+.
T Consensus 14 ~~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~-tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 14 GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DK-TLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SS-BHHHHCCCTTEEEEECCSS
T ss_pred CCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cC-cHHHCCCCCCCEEEEEecc
Confidence 456799999888999999999999999999999999999999999999999994 65 9999999999999987653
No 125
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.9e-13 Score=119.23 Aligned_cols=71 Identities=23% Similarity=0.396 Sum_probs=65.6
Q ss_pred EEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120 30 ILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 30 M~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
|+|+|+.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+.+
T Consensus 29 i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 29 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILK-DDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECC-TTSBTTTTTCCTTEEEEECCC
T ss_pred EEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECC-CcCcHHHCCCCCCCEEEEEeC
Confidence 45555558899999999999999999999999999999999999999999 999999999999999999865
No 126
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.36 E-value=9.4e-13 Score=119.21 Aligned_cols=76 Identities=20% Similarity=0.324 Sum_probs=69.8
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecCC
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSA 182 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks~ 182 (577)
..|.|+|++. |+.+.++|++++||.+||++|+.+.+++ +++|+|+|+|+.|+|+++|++|+|+++++|+|+++...
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~g 106 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQ--TDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDP 106 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSC--SSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC---
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence 4589999998 9999999999999999999999999987 99999999999999999999999999999999987543
No 127
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.36 E-value=2e-12 Score=111.72 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=66.8
Q ss_pred CCCCCCCcEEEEEEe---CCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEc--Ce---eccCCCCcccccccccc
Q 008120 22 TGRSSSESILIYLSV---SGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFG--GR---ELARNHSLVKDYGVTGG 93 (577)
Q Consensus 22 ~~~~~~~sM~I~Vtl---~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~--Gk---~L~~D~~tL~dygI~dg 93 (577)
.+..+...+.|+|+. .+..++++|++++||++||++|+..+|+|+++|||+|. |+ .|.+|+.+|++|||++|
T Consensus 8 ~~~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~g 87 (95)
T 2kjr_A 8 HSHGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDG 87 (95)
T ss_dssp CCCCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSS
T ss_pred cccCCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCC
Confidence 344457889999953 23589999999999999999999999999999999998 55 56449999999999999
Q ss_pred ccccee
Q 008120 94 NVLHLV 99 (577)
Q Consensus 94 stL~Lv 99 (577)
++|+|+
T Consensus 88 stihlv 93 (95)
T 2kjr_A 88 LRLHVV 93 (95)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 999975
No 128
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=6.7e-13 Score=115.80 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=67.5
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEE--cCeeccCCCCcccccccccccccceeeee
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVF--GGRELARNHSLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif--~Gk~L~~D~~tL~dygI~dgstL~LvlrL 102 (577)
...|++++ ++.|++++++|++++||.+||++|++++|||+++|+|+| +|+ |. |+.+|++|+|+.|++|||++.-
T Consensus 6 ~~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~-D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 6 SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VE-DSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CCCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CC-TTSBHHHHCCCSEEEEEECCSS
T ss_pred CcceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CC-CcCCHHHcCCCCCCEEEEEecC
Confidence 44688777 899999999999999999999999999999999999996 666 87 9999999999999999998764
No 129
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.5e-12 Score=115.88 Aligned_cols=78 Identities=19% Similarity=0.327 Sum_probs=73.1
Q ss_pred ccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecCC
Q 008120 103 SDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSA 182 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks~ 182 (577)
.+..+|+|++.+|+.+.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|+++...
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~G 84 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 84 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCS
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCC
Confidence 3567899999999999999999999999999999999987 99999999999999999999999999999999988543
No 130
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.34 E-value=9.1e-13 Score=114.83 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=69.6
Q ss_pred cccccccccCCC----ceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCC-CcccccCCCCCCEEEEEE
Q 008120 104 DLLLITVRTSCG----KELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQ-RLIDDICKDNDAVIHLLV 178 (577)
Q Consensus 104 d~m~I~Vrt~~G----k~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~-~tLsdy~I~~~svI~Lvv 178 (577)
..|+|+|++.++ +.+.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+ ++|++|+|+++++|||+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVP--AEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCC--GGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcC--hHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 348899998654 799999999999999999999999987 9999999999999987 799999999999999987
Q ss_pred ecCCC
Q 008120 179 QKSAK 183 (577)
Q Consensus 179 rks~k 183 (577)
+....
T Consensus 84 ~~~gg 88 (102)
T 1v5o_A 84 KDNVG 88 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75443
No 131
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.34 E-value=1.6e-12 Score=114.24 Aligned_cols=75 Identities=19% Similarity=0.152 Sum_probs=68.3
Q ss_pred ccccccccCCC---ceeEEe--------eccC-CchhhhHHHHHhhC--CCCCCCCc-eEEEECCeecCCCCcccccCCC
Q 008120 105 LLLITVRTSCG---KELEFH--------IDRY-RNVGYLKQRIARKG--KGFVDVVD-QEIFCDGEKLDDQRLIDDICKD 169 (577)
Q Consensus 105 ~m~I~Vrt~~G---k~~~i~--------Vd~~-~TV~~LK~kI~~~~--gi~~p~~~-QrLif~Gr~LeD~~tLsdy~I~ 169 (577)
.|.|+||+.+| +.+.++ |+++ +||.+||++|+... +++ +++ |+|+|+|+.|+|.++|++|+|+
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip--~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVP--DPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCC--CSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCC--hhhcEEEEECCeECCCCCcHHHcCCC
Confidence 48899999999 899999 4454 99999999999999 887 899 9999999999999999999999
Q ss_pred CCCEEEEEEecC
Q 008120 170 NDAVIHLLVQKS 181 (577)
Q Consensus 170 ~~svI~Lvvrks 181 (577)
++++|||+++.+
T Consensus 90 ~g~~i~lv~~~~ 101 (107)
T 1x1m_A 90 PGSTVHVLRKSW 101 (107)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCEEEEEeCCC
Confidence 999999988754
No 132
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.33 E-value=2.1e-12 Score=113.50 Aligned_cols=72 Identities=15% Similarity=0.006 Sum_probs=67.4
Q ss_pred cccccccCCC--ceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCC-CCCCEEEEEEe
Q 008120 106 LLITVRTSCG--KELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICK-DNDAVIHLLVQ 179 (577)
Q Consensus 106 m~I~Vrt~~G--k~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I-~~~svI~Lvvr 179 (577)
|+|+|++..+ .+++++|++++||.+||++|++++|+| +++|||+|+|+.++|+++|.+|+| ++|+++||++.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gip--p~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFP--PVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCC--HHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 6889998874 789999999999999999999999997 999999999999999999999999 69999999875
No 133
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=3.3e-12 Score=113.82 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=78.1
Q ss_pred CCCcEEEEEE--eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeec
Q 008120 26 SSESILIYLS--VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLS 103 (577)
Q Consensus 26 ~~~sM~I~Vt--l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLs 103 (577)
.+..|.|.|. ..|+.++++++++.||++||++++...++|++.|+|+|+||.|. |+.||.+|||++|.||||+++-.
T Consensus 12 ~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLK-D~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 12 EDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILK-NNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp CSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEEC-SSCCHHHHSCCSSCEEEEEEEES
T ss_pred cCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcC-CcchHHHcCCCCCCEEEEEEecC
Confidence 3556777774 35789999999999999999999999999999999999999999 99999999999999999999977
Q ss_pred cccccccccCCCce
Q 008120 104 DLLLITVRTSCGKE 117 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~ 117 (577)
+.-..=||+..|..
T Consensus 91 ~p~~~p~~~~~~~~ 104 (118)
T 2daf_A 91 NPDLYPVRRIDGLT 104 (118)
T ss_dssp CTTTSCCCCCCSCC
T ss_pred CCccCcceeccCcc
Confidence 66555555555443
No 134
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.32 E-value=1.2e-12 Score=126.63 Aligned_cols=74 Identities=22% Similarity=0.317 Sum_probs=71.1
Q ss_pred ccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 105 LLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 105 ~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
.|+|+||+.+|+++.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+|+++++|||++|-
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp--~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlrl 178 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 178 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCC--HHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEc
Confidence 48999999999999999999999999999999999987 999999999999999999999999999999999873
No 135
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.32 E-value=1.5e-13 Score=124.56 Aligned_cols=73 Identities=22% Similarity=0.383 Sum_probs=0.0
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
|+|+|++.+|+++.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+|++|++|||+++.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl 73 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (128)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcC--hHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEc
Confidence 6899999999999999999999999999999999987 999999999999999999999999999999999884
No 136
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.31 E-value=3.1e-12 Score=108.53 Aligned_cols=71 Identities=20% Similarity=0.140 Sum_probs=63.0
Q ss_pred EEEEEE---eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEE-------cCeeccCCCCccccccccccccccee
Q 008120 30 ILIYLS---VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVF-------GGRELARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 30 M~I~Vt---l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif-------~Gk~L~~D~~tL~dygI~dgstL~Lv 99 (577)
++|.|+ ...+.+.+++++++||.+||++|+..+|+|+++|||+| .|+.|. |+.+|++|||++|++|||+
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~-d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMA-NDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCC-TTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcC-CCCCHHHCCCCCCCEEEEE
Confidence 566775 34567889999999999999999999999999999996 588898 9999999999999999997
Q ss_pred ee
Q 008120 100 LK 101 (577)
Q Consensus 100 lr 101 (577)
-+
T Consensus 82 d~ 83 (86)
T 4b6w_A 82 DL 83 (86)
T ss_dssp EC
T ss_pred eC
Confidence 53
No 137
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.30 E-value=2e-12 Score=113.69 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=68.0
Q ss_pred CCcEEEEE-EeCC---eEEEEEe--------CC-CCCHHHHHHHHHHhh--CCcccc-EEEEEcCeeccCCCCccccccc
Q 008120 27 SESILIYL-SVSG---SLVPMRV--------LE-TDSIESVKLRIQTCK--GFVVKK-QKLVFGGRELARNHSLVKDYGV 90 (577)
Q Consensus 27 ~~sM~I~V-tl~G---~~~~leV--------~~-sdTV~~LK~kI~~~~--Gip~~~-QrLif~Gk~L~~D~~tL~dygI 90 (577)
...|+|+| ..++ +.+.+++ ++ ++||.+||++|+..+ |+|+++ |+|+|+|+.|. |+.+|++|||
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~-D~~tL~~y~i 88 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLK-DDQTLDFYGI 88 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECC-TTCBHHHHTC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECC-CCCcHHHcCC
Confidence 45699999 5666 6899994 45 499999999999999 999999 99999999998 9999999999
Q ss_pred ccccccceeeeec
Q 008120 91 TGGNVLHLVLKLS 103 (577)
Q Consensus 91 ~dgstL~LvlrLs 103 (577)
++|++|||+++..
T Consensus 89 ~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 89 QPGSTVHVLRKSW 101 (107)
T ss_dssp CTTCEEEEEESSC
T ss_pred CCCCEEEEEeCCC
Confidence 9999999998754
No 138
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.30 E-value=4.2e-12 Score=112.93 Aligned_cols=65 Identities=22% Similarity=0.223 Sum_probs=62.4
Q ss_pred CCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 113 SCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 113 ~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
.+|+.+.++|++++||.+||++|+...+++ +++|+|+|+|+.|+|+.+|++|+|+++++|||++|
T Consensus 43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~r 107 (115)
T 1we7_A 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMP--AGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALK 107 (115)
T ss_dssp CSSEEEEEEECSCSBTHHHHHHHHHHSSCC--TTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEEC
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHCCC--hHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence 468999999999999999999999999987 99999999999999999999999999999999987
No 139
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.30 E-value=2.3e-12 Score=111.31 Aligned_cols=81 Identities=14% Similarity=0.134 Sum_probs=70.1
Q ss_pred ccccccccCCCcee-EEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 008120 105 LLLITVRTSCGKEL-EFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSAK 183 (577)
Q Consensus 105 ~m~I~Vrt~~Gk~~-~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks~k 183 (577)
.|.|+|+. .|+.+ .++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|. +|++|+|+++++|+|+....+
T Consensus 7 ~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip--~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~~- 81 (96)
T 1wgg_A 7 GYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQ--PARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSADA- 81 (96)
T ss_dssp EEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCC--TTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCCC-
T ss_pred EEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecchh-
Confidence 47888985 68999 699999999999999999999987 9999999999999999 999999999999999765442
Q ss_pred ccCCccc
Q 008120 184 VRAKPVE 190 (577)
Q Consensus 184 ~~~~p~~ 190 (577)
++..|..
T Consensus 82 ~~~~p~~ 88 (96)
T 1wgg_A 82 LPEEPSA 88 (96)
T ss_dssp CCCCCCC
T ss_pred cCCCCCc
Confidence 4444433
No 140
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.29 E-value=4.8e-12 Score=109.79 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=65.8
Q ss_pred CCCCcEEEEEEeC---CeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCe---e---ccCCCCcccccccccccc
Q 008120 25 SSSESILIYLSVS---GSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGR---E---LARNHSLVKDYGVTGGNV 95 (577)
Q Consensus 25 ~~~~sM~I~Vtl~---G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk---~---L~~D~~tL~dygI~dgst 95 (577)
.....+.|+|+.+ +..++++|++++||++||++|+..+|+|+++|||+|.|+ . |.+|+.+|++|||++|++
T Consensus 10 ~~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~ 89 (97)
T 2kj6_A 10 HGDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFR 89 (97)
T ss_dssp CCCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCE
T ss_pred CCCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCE
Confidence 3578899999632 347999999999999999999999999999999999883 3 434999999999999999
Q ss_pred cceee
Q 008120 96 LHLVL 100 (577)
Q Consensus 96 L~Lvl 100 (577)
|+|+-
T Consensus 90 Ihlvd 94 (97)
T 2kj6_A 90 LHIID 94 (97)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99863
No 141
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.29 E-value=3.5e-12 Score=107.58 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=65.8
Q ss_pred ccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 107 LITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 107 ~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
.+++++.+|+.+.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+|++|++|+|+..
T Consensus 13 ~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 13 IKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVL--PRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCC--TTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 456677889999999999999999999999999987 99999999999999999999999999999998754
No 142
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.27 E-value=3.6e-13 Score=129.83 Aligned_cols=71 Identities=23% Similarity=0.214 Sum_probs=0.5
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecccc
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLL 106 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~m 106 (577)
|+|+| +++|++++++|++++||.+||.+|+..+|||+++|+|+|+|++|+ |+.+|+ +++||||++++.++.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~Le-D~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAP-NTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp -----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECC-CCCccc-----CCCEEEEEEecCCCc
Confidence 89999 789999999999999999999999999999999999999999999 899998 899999999999874
No 143
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.27 E-value=4e-13 Score=125.68 Aligned_cols=72 Identities=22% Similarity=0.398 Sum_probs=0.0
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
|+|+|++.+|+++.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+|+++++|||++|
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEEccccCcHHHcCCCCCCEEEEEee
Confidence 7899999999999999999999999999999999987 99999999999999999999999999999999976
No 144
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.26 E-value=8.1e-12 Score=106.36 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=68.0
Q ss_pred cccccccccCCCceeEEeeccC-----CchhhhHHHHHhhCCCCCCCCceEEEECCeecCC-CCcccccCCCCCCEEEEE
Q 008120 104 DLLLITVRTSCGKELEFHIDRY-----RNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDD-QRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~-----~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD-~~tLsdy~I~~~svI~Lv 177 (577)
..|.|+|++ .|+.+.++|+++ .||.+||++|++..+++ +++|+|+|+|+.|+| ..+|++|+|+++++|||+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip--~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVP--QSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCC--TTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcC--HHHEEEEECCeecCCCcccHHHCCCCCCCEEEEE
Confidence 347899998 588999999995 99999999999999987 999999999999998 668999999999999998
Q ss_pred EecCC
Q 008120 178 VQKSA 182 (577)
Q Consensus 178 vrks~ 182 (577)
.++..
T Consensus 83 ~~~~~ 87 (92)
T 1wxv_A 83 GKKNS 87 (92)
T ss_dssp SCCSC
T ss_pred ecCCC
Confidence 76443
No 145
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.25 E-value=8.6e-12 Score=106.21 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=67.5
Q ss_pred ccccccccCCCceeEE-eeccCCchhhhHHHHHhhCCCCCCCCceEEE---ECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 105 LLLITVRTSCGKELEF-HIDRYRNVGYLKQRIARKGKGFVDVVDQEIF---CDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 105 ~m~I~Vrt~~Gk~~~i-~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLi---f~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
.|.|+|+. .|+++.+ +|++++||.+||++|+++.+++ +++|+|+ |+|+.|+|..+|++|+|+++++|+|+..
T Consensus 7 ~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip--~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVL--PERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCC--TTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred eEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcC--HHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 47889996 7899999 9999999999999999999987 9999999 9999999999999999999999999764
No 146
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=6.9e-12 Score=106.77 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=63.1
Q ss_pred CCcEEEEE-EeCCeEE--EE-EeCCCCCHHHHHHHHHH-hhCCccccEEEEEc--CeeccCCCCcccccccccccccce
Q 008120 27 SESILIYL-SVSGSLV--PM-RVLETDSIESVKLRIQT-CKGFVVKKQKLVFG--GRELARNHSLVKDYGVTGGNVLHL 98 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~--~l-eV~~sdTV~~LK~kI~~-~~Gip~~~QrLif~--Gk~L~~D~~tL~dygI~dgstL~L 98 (577)
-..|+|+| ++.|+.+ ++ +|++++||.+||++|++ ..|+|+++|+|+|. |+.|. |+.+|++|||.++++|++
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~-D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLK-DEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCC-TTCBTTTSSCCSEEEEEE
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcC-CCCCHHHcCCCCCCEEEE
Confidence 34599999 7777654 68 99999999999999999 48999999999987 99998 999999999999999764
No 147
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.25 E-value=8.9e-12 Score=128.60 Aligned_cols=76 Identities=33% Similarity=0.640 Sum_probs=70.0
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeec
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLS 103 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLs 103 (577)
...|+|+| +++|+++.++|++++||.+||++|++..|+|+++|+|+|+|++|. |+.+|++|||+++++|+|++|++
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~-D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTGGGTCCTTCEEEEEC---
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecC-CCCCHHHcCCCCCCEEEEEEeCC
Confidence 57799999 568999999999999999999999999999999999999999998 99999999999999999998863
No 148
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=110.10 Aligned_cols=73 Identities=12% Similarity=0.101 Sum_probs=66.6
Q ss_pred cccccc-cCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 106 LLITVR-TSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 106 m~I~Vr-t~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
+.|.|+ +..|..+.++++++.||.+||++++.+.++| +++|+|+|+||+|+|+.||.+|+|++|.+|||+++.
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP--~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIP--HSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCC--TTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCC--hHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 445555 5668899999999999999999999999987 999999999999999999999999999999998874
No 149
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.21 E-value=2e-11 Score=103.53 Aligned_cols=68 Identities=9% Similarity=0.005 Sum_probs=61.4
Q ss_pred cCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEE-------CCeecCCCCcccccCCCCCCEEEEEEecC
Q 008120 112 TSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFC-------DGEKLDDQRLIDDICKDNDAVIHLLVQKS 181 (577)
Q Consensus 112 t~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif-------~Gr~LeD~~tLsdy~I~~~svI~Lvvrks 181 (577)
....+.+.+.+++++||.+||++|+.++|+| +++|+|+| .|+.|+|.++|++|+|++|++|||+-++|
T Consensus 11 ~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip--~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P 85 (86)
T 4b6w_A 11 ASRMRVPEKRYGLAQTIESIKENVFTHFATP--PEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP 85 (86)
T ss_dssp TCSCCEEEEEEETTSBHHHHHHHHHTTSCCC--GGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CCCCeEEEEEcCccCcHHHHHHHHHHHHCCC--HHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 3455677899999999999999999999997 99999997 48899999999999999999999987655
No 150
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.19 E-value=1.3e-11 Score=130.41 Aligned_cols=79 Identities=23% Similarity=0.419 Sum_probs=69.5
Q ss_pred CCCCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHH---hhCCccccEEEEEcCeeccCCCCccccccccccccc-cee
Q 008120 25 SSSESILIYL-SVSGSLVPMRVLETDSIESVKLRIQT---CKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVL-HLV 99 (577)
Q Consensus 25 ~~~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~---~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL-~Lv 99 (577)
.....|+|+| ++.|+++.|+|++++||.+||.+|+. +.|+|+++|||+|+||.|. |+.+|++|||++|++| +|+
T Consensus 3 ~~~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~-D~~tL~dygI~~gstIv~lv 81 (368)
T 1oqy_A 3 LGSSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMV 81 (368)
T ss_dssp ---CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEEC-SSSBTTTTCCCTTSCEEEEE
T ss_pred CCCceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecC-CcCCHHHcCCCCCCEEEEEE
Confidence 3467799999 67899999999999999999999999 6789999999999999999 9999999999999998 666
Q ss_pred eeecc
Q 008120 100 LKLSD 104 (577)
Q Consensus 100 lrLsd 104 (577)
.++.+
T Consensus 82 ~k~~~ 86 (368)
T 1oqy_A 82 TKTKA 86 (368)
T ss_dssp ECCCS
T ss_pred ecCCC
Confidence 66543
No 151
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=1.5e-11 Score=104.60 Aligned_cols=69 Identities=12% Similarity=0.226 Sum_probs=63.3
Q ss_pred cccccccCCCcee--EE-eeccCCchhhhHHHHHhh-CCCCCCCCceEEEEC--CeecCCCCcccccCCCCCCEEEE
Q 008120 106 LLITVRTSCGKEL--EF-HIDRYRNVGYLKQRIARK-GKGFVDVVDQEIFCD--GEKLDDQRLIDDICKDNDAVIHL 176 (577)
Q Consensus 106 m~I~Vrt~~Gk~~--~i-~Vd~~~TV~~LK~kI~~~-~gi~~p~~~QrLif~--Gr~LeD~~tLsdy~I~~~svI~L 176 (577)
|.|+|++..|+++ .+ +|++++||.+||++|+++ .+++ +++|+|+|. |+.|+|+.+|++|+|+++++|++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~--~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWY--PARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSC--TTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCC--hHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 8999999998886 48 999999999999999994 7876 999999976 99999999999999999999886
No 152
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.17 E-value=4e-11 Score=103.07 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=63.1
Q ss_pred CcEEEEEEeCCe--EEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcC---ee---ccCCCCccccccccccccccee
Q 008120 28 ESILIYLSVSGS--LVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGG---RE---LARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 28 ~sM~I~Vtl~G~--~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~G---k~---L~~D~~tL~dygI~dgstL~Lv 99 (577)
..+.|+|+..+. .+.++|.+++||.+||++|+..+|+|+++|||+|.| +. |.+|+.+|++|||++|++|||+
T Consensus 6 ~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 6 SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp CCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred cEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 347888865554 689999999999999999999999999999999986 43 4339999999999999999986
Q ss_pred e
Q 008120 100 L 100 (577)
Q Consensus 100 l 100 (577)
-
T Consensus 86 d 86 (95)
T 1v6e_A 86 D 86 (95)
T ss_dssp C
T ss_pred E
Confidence 4
No 153
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=1.7e-11 Score=106.99 Aligned_cols=74 Identities=12% Similarity=0.140 Sum_probs=67.2
Q ss_pred ccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEE--CCeecCCCCcccccCCCCCCEEEEEEecC
Q 008120 105 LLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFC--DGEKLDDQRLIDDICKDNDAVIHLLVQKS 181 (577)
Q Consensus 105 ~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif--~Gr~LeD~~tLsdy~I~~~svI~Lvvrks 181 (577)
.|.+++++.+|+++.++|++++||.+||++|++++|+| +++|+|+| .|+ |+|.++|++|+|+.+++|||++...
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIp--p~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIP--VSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCC--TTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCC--hhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence 46778888899999999999999999999999999997 89999996 566 9999999999999999999987643
No 154
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.17 E-value=4.5e-11 Score=103.02 Aligned_cols=80 Identities=9% Similarity=0.226 Sum_probs=74.1
Q ss_pred CCCCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeec
Q 008120 25 SSSESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLS 103 (577)
Q Consensus 25 ~~~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLs 103 (577)
+.++.|+|+| +.+|+.+.+.|.+++++..||.+++++.|+++++|||+|+|+.|. ++.|+++|++++|++|++++++.
T Consensus 3 ~~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~~~ 81 (94)
T 2io1_B 3 HMNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQT 81 (94)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTCEEEEEECCE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEecc
Confidence 3467799999 578999999999999999999999999999999999999999999 99999999999999999999998
Q ss_pred cc
Q 008120 104 DL 105 (577)
Q Consensus 104 d~ 105 (577)
++
T Consensus 82 GG 83 (94)
T 2io1_B 82 GG 83 (94)
T ss_dssp ES
T ss_pred CC
Confidence 87
No 155
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.16 E-value=3.1e-11 Score=127.68 Aligned_cols=76 Identities=22% Similarity=0.313 Sum_probs=68.0
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHh---hCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIAR---KGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~---~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
..|.|+||+.+|+++.++|++++||.+||++|+. +.+++ +++|+|+|+|++|+|.++|++|+|+++++|++++.|
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip--~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCC--STEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEEC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCC--hhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEec
Confidence 3489999999999999999999999999999999 56676 999999999999999999999999999999444443
Q ss_pred C
Q 008120 181 S 181 (577)
Q Consensus 181 s 181 (577)
.
T Consensus 84 ~ 84 (368)
T 1oqy_A 84 T 84 (368)
T ss_dssp C
T ss_pred C
Confidence 3
No 156
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.15 E-value=2.8e-11 Score=106.43 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=65.6
Q ss_pred CCcEEEEE-EeCCeEEEEEeC-CCCCHHHHHHHHHHhhCCccccEEEEEcCe-----------ec---cCCCCccccccc
Q 008120 27 SESILIYL-SVSGSLVPMRVL-ETDSIESVKLRIQTCKGFVVKKQKLVFGGR-----------EL---ARNHSLVKDYGV 90 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~-~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk-----------~L---~~D~~tL~dygI 90 (577)
.+.|+|+| +.+|.. .++|+ +++||.+||++|+..+|+|+++|+|+|.|+ .| .+|+.+|++|||
T Consensus 5 ~~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 5 SSGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp CCCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred CCeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 45599999 677865 79999 999999999999999999999999999988 44 349999999999
Q ss_pred ccccccceeee
Q 008120 91 TGGNVLHLVLK 101 (577)
Q Consensus 91 ~dgstL~Lvlr 101 (577)
++|++|||...
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 99999998765
No 157
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.15 E-value=1.2e-11 Score=106.43 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=64.6
Q ss_pred ccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 105 LLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 105 ~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
.|.|+|+ ..|+++.++|+++.||.+||++|++..+++ +++|+|+|+|+.|+| .+|++|+|+++++|||+.++
T Consensus 17 ~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip--~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 17 LVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLP--PAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSC--STTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCSS
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEecc
Confidence 3678887 468999999999999999999999999987 999999999999955 59999999999999997643
No 158
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.14 E-value=7e-11 Score=106.33 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=63.5
Q ss_pred CcEEEEEEeCCe--EEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcC---e---eccCCCCccccccccccccccee
Q 008120 28 ESILIYLSVSGS--LVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGG---R---ELARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 28 ~sM~I~Vtl~G~--~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~G---k---~L~~D~~tL~dygI~dgstL~Lv 99 (577)
..|.|+|+..+. .+.+++.+++||++||.+|+..+|+|+++|||+|.| + .|.+|+.+|++|||++|++|||+
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 357888864444 689999999999999999999999999999999987 4 34349999999999999999987
Q ss_pred e
Q 008120 100 L 100 (577)
Q Consensus 100 l 100 (577)
.
T Consensus 85 d 85 (122)
T 1t0y_A 85 D 85 (122)
T ss_dssp E
T ss_pred e
Confidence 5
No 159
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.14 E-value=5.4e-11 Score=122.77 Aligned_cols=76 Identities=21% Similarity=0.379 Sum_probs=72.0
Q ss_pred eccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 102 LSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 102 Lsd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
..+.|+|+||+.+|+.+.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+.+|++|+|+++++|||++|
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp--~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlR 305 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 305 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC-
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 46779999999999999999999999999999999999987 99999999999999999999999999999999876
No 160
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.13 E-value=5.9e-11 Score=102.47 Aligned_cols=73 Identities=14% Similarity=0.226 Sum_probs=63.0
Q ss_pred ccccccccccCCC--ceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEEC--Ce---ec-CCCCcccccCCCCCCEE
Q 008120 103 SDLLLITVRTSCG--KELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCD--GE---KL-DDQRLIDDICKDNDAVI 174 (577)
Q Consensus 103 sd~m~I~Vrt~~G--k~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~--Gr---~L-eD~~tLsdy~I~~~svI 174 (577)
.+.+.|+|+...+ +.++++|++++||.+||++|+.++|+| +++|+|+|. |+ .| +|.++|++|+|++|++|
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP--~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGC--AGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSC--TTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcC--HHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence 3445677776555 478899999999999999999999997 999999997 45 45 99999999999999999
Q ss_pred EEE
Q 008120 175 HLL 177 (577)
Q Consensus 175 ~Lv 177 (577)
||+
T Consensus 91 hlv 93 (95)
T 2kjr_A 91 HVV 93 (95)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 161
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.13 E-value=4.8e-12 Score=121.99 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=0.0
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
|+|+|+|++|+++.++|++++||.+||++|+...++| +++|+|+|+|++|+|+++|+ ++++|||++|
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP--~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlR 67 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFE--IDMMTLVNNGFIAPNTELVT-----DDVTYYLSLK 67 (189)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcC--hhHEEEEecCeECCCCCccc-----CCCEEEEEEe
Confidence 7899999999999999999999999999999999987 99999999999999999998 8999999987
No 162
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.03 E-value=1.8e-10 Score=119.74 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=68.9
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEE---EcCeeccCCCCcccccccccccccceeeeec
Q 008120 27 SESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLV---FGGRELARNHSLVKDYGVTGGNVLHLVLKLS 103 (577)
Q Consensus 27 ~~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLi---f~Gk~L~~D~~tL~dygI~dgstL~LvlrLs 103 (577)
.+.|.|+|+.+|++++++|++++||++||++|++.+|||+++|||+ |.|++|. |+.+|++|||++|++|+|+....
T Consensus 3 ~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~-D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 3 VKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAA-DNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp -CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCC-TTSBTTSSCCC--CEEEEECCCC
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccC-ccccHHHcCCCCCCEEEEEccch
Confidence 4568999999999999999999999999999999999999999999 8999999 99999999999999999987654
Q ss_pred c
Q 008120 104 D 104 (577)
Q Consensus 104 d 104 (577)
.
T Consensus 82 ~ 82 (320)
T 3shq_A 82 A 82 (320)
T ss_dssp -
T ss_pred h
Confidence 3
No 163
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.03 E-value=2.1e-10 Score=99.40 Aligned_cols=71 Identities=13% Similarity=0.075 Sum_probs=60.0
Q ss_pred ccccccC--CCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECC---ee----cCCCCcccccCCCCCCEEEEE
Q 008120 107 LITVRTS--CGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDG---EK----LDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 107 ~I~Vrt~--~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~G---r~----LeD~~tLsdy~I~~~svI~Lv 177 (577)
.|+|... .++.++++|++++||.+||++|+.++|+| +++|+|+|.| +. ++|.++|++|+|++|++|||+
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip--~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTS--VNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCC--TTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcC--HHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence 4444433 34578899999999999999999999997 9999999988 33 489999999999999999986
Q ss_pred Ee
Q 008120 178 VQ 179 (577)
Q Consensus 178 vr 179 (577)
-.
T Consensus 94 d~ 95 (97)
T 2kj6_A 94 DL 95 (97)
T ss_dssp EC
T ss_pred eC
Confidence 43
No 164
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.02 E-value=1.4e-10 Score=101.88 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=65.3
Q ss_pred cccccccCCCceeEEeec-cCCchhhhHHHHHhhCCCCCCCCceEEEECCe-----------e----cCCCCcccccCCC
Q 008120 106 LLITVRTSCGKELEFHID-RYRNVGYLKQRIARKGKGFVDVVDQEIFCDGE-----------K----LDDQRLIDDICKD 169 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd-~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr-----------~----LeD~~tLsdy~I~ 169 (577)
|.|.||+.+|+. .++|+ +++||.+||++|+.+++++ +++|+|+|.|+ . ++|..+|++|+|+
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip--~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIP--IHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCC--TTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcC--cccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 789999999976 79999 9999999999999999987 89999999988 4 5899999999999
Q ss_pred CCCEEEEEEe
Q 008120 170 NDAVIHLLVQ 179 (577)
Q Consensus 170 ~~svI~Lvvr 179 (577)
+|++|||+..
T Consensus 85 ~G~~L~l~~~ 94 (107)
T 1wf9_A 85 HGSMVYLAYE 94 (107)
T ss_dssp TTCEEECCCS
T ss_pred CCCEEEEEeC
Confidence 9999998654
No 165
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.99 E-value=7.3e-10 Score=94.92 Aligned_cols=79 Identities=9% Similarity=0.244 Sum_probs=73.6
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
++.|+|.| +.+|+.+.+.|.+++++..|+...+++.|+++++|+|+|+|+.|. ++.|.++|++.+|++|++++++.++
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccCC
Confidence 45799999 578999999999999999999999999999999999999999998 9999999999999999999998776
Q ss_pred c
Q 008120 106 L 106 (577)
Q Consensus 106 m 106 (577)
-
T Consensus 82 ~ 82 (91)
T 2io0_B 82 V 82 (91)
T ss_dssp C
T ss_pred c
Confidence 3
No 166
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.97 E-value=6.1e-10 Score=95.61 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=60.9
Q ss_pred cccccccCCC-ceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECC---ee----cCCCCcccccCCCCCCEEEEE
Q 008120 106 LLITVRTSCG-KELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDG---EK----LDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 106 m~I~Vrt~~G-k~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~G---r~----LeD~~tLsdy~I~~~svI~Lv 177 (577)
+.|+|+.... ..+.++|++++||.+||++|+.+.|++ +++|+|+|.| +. ++|.++|++|+|+++++|||+
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip--~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSP--ASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSC--TTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCC--HHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 3455554433 268899999999999999999999987 9999999986 43 589999999999999999986
Q ss_pred Eec
Q 008120 178 VQK 180 (577)
Q Consensus 178 vrk 180 (577)
-..
T Consensus 86 d~~ 88 (95)
T 1v6e_A 86 DHS 88 (95)
T ss_dssp CCS
T ss_pred ECC
Confidence 543
No 167
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.96 E-value=1.4e-09 Score=93.45 Aligned_cols=79 Identities=9% Similarity=0.240 Sum_probs=71.4
Q ss_pred CCCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 26 SSESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 26 ~~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
....|+|+| ..+|+.+.+.|.+++++..|+...+++.|+++++|+|+|.|+.|. ++.|.++|++.+|++|++++++.|
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECC--
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeeccC
Confidence 356799999 578899999999999999999999999999999999999999998 999999999999999999998876
Q ss_pred c
Q 008120 105 L 105 (577)
Q Consensus 105 ~ 105 (577)
|
T Consensus 93 G 93 (93)
T 2d07_B 93 G 93 (93)
T ss_dssp -
T ss_pred C
Confidence 4
No 168
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.96 E-value=1.4e-09 Score=93.73 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=70.9
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
..|.|.|++.+|+++.+.|.+++++..|+++++++.+++ +++|+|+|.|+.|.+..|..+|+++++++|+++++.
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~ 80 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQ 80 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEec
Confidence 447899999999999999999999999999999999987 899999999999999999999999999999998864
No 169
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.92 E-value=3.9e-09 Score=92.91 Aligned_cols=79 Identities=8% Similarity=0.155 Sum_probs=72.0
Q ss_pred CCCCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeec
Q 008120 25 SSSESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLS 103 (577)
Q Consensus 25 ~~~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLs 103 (577)
.....|+|.| + +|+.+.+.|.+++++..|+...+++.|+++.+|+|+|+|+.|. ++.|.++|++.+|++|++++++.
T Consensus 27 ~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~-~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 27 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp CCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECC-
T ss_pred CCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcC-CCCCHHHcCCCCCCEEEEEeecc
Confidence 3467799999 7 8999999999999999999999999999999999999999999 99999999999999999999877
Q ss_pred cc
Q 008120 104 DL 105 (577)
Q Consensus 104 d~ 105 (577)
||
T Consensus 105 GG 106 (106)
T 2eke_C 105 GG 106 (106)
T ss_dssp --
T ss_pred cC
Confidence 64
No 170
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.92 E-value=1e-09 Score=92.44 Aligned_cols=71 Identities=13% Similarity=0.217 Sum_probs=61.4
Q ss_pred EEEEE-EeCCeEEEEE-eCCCCCHHHHHHHHHHhhCCccccEEEEEc--Ceecc--CCCCcccccccccccccceeee
Q 008120 30 ILIYL-SVSGSLVPMR-VLETDSIESVKLRIQTCKGFVVKKQKLVFG--GRELA--RNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 30 M~I~V-tl~G~~~~le-V~~sdTV~~LK~kI~~~~Gip~~~QrLif~--Gk~L~--~D~~tL~dygI~dgstL~Lvlr 101 (577)
|+|+| +.+|+ ..++ +++++||.+||++|++.+|++++.|+|+|+ +++|. +|+.+|++|||.+|++|+|.-.
T Consensus 1 m~i~vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 78999 55664 4588 999999999999999999999999999997 48873 4788999999999999987644
No 171
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.91 E-value=1.8e-09 Score=97.15 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=64.2
Q ss_pred cccccccccCCCc-eeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECC---e---e-cCCCCcccccCCCCCCEEE
Q 008120 104 DLLLITVRTSCGK-ELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDG---E---K-LDDQRLIDDICKDNDAVIH 175 (577)
Q Consensus 104 d~m~I~Vrt~~Gk-~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~G---r---~-LeD~~tLsdy~I~~~svI~ 175 (577)
+.+.|+|+...+. .+.++++++.||.+||++|+.+.|+| +++|+|+|.| + . ++|.++|++|+|++|++||
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip--~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ih 82 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIH 82 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCC--TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCC--HHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEE
Confidence 3456666655443 68899999999999999999999997 9999999977 4 3 4899999999999999999
Q ss_pred EEEecCC
Q 008120 176 LLVQKSA 182 (577)
Q Consensus 176 Lvvrks~ 182 (577)
|+...+.
T Consensus 83 vvd~~p~ 89 (122)
T 1t0y_A 83 AVDVTGG 89 (122)
T ss_dssp EEECTTC
T ss_pred EEeCCCC
Confidence 9865443
No 172
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.90 E-value=2e-09 Score=94.37 Aligned_cols=79 Identities=9% Similarity=0.241 Sum_probs=74.2
Q ss_pred CCCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 26 SSESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 26 ~~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
....|+|+| ..+|+.+.+.|.+++++..|+...+++.|+++++|+|+|.|+.|. ++.|.++|++.+|++|++++++.+
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCC-TTSCTTTTTCCTTEEEEECCCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccC
Confidence 356899999 578999999999999999999999999999999999999999998 999999999999999999998877
Q ss_pred c
Q 008120 105 L 105 (577)
Q Consensus 105 ~ 105 (577)
+
T Consensus 100 G 100 (104)
T 1wz0_A 100 G 100 (104)
T ss_dssp C
T ss_pred C
Confidence 6
No 173
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.89 E-value=3.4e-09 Score=88.26 Aligned_cols=74 Identities=14% Similarity=0.315 Sum_probs=68.8
Q ss_pred CCCCcEEEEE-EeCCe-EEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCccccccccccccccee
Q 008120 25 SSSESILIYL-SVSGS-LVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 25 ~~~~sM~I~V-tl~G~-~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lv 99 (577)
..++.|+|.| ..+|+ .+.+.|.+++++..|+...+++.|+++++|+|+|.|+.|. ++.|.++|++.+|++|++.
T Consensus 3 ~~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 3 LGSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLS-GKELPADLGLESGDLIEVW 78 (79)
T ss_dssp TCCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECC-SCCCHHHHTCCTTCEEEEE
T ss_pred CCCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEe
Confidence 3567899999 57885 8999999999999999999999999999999999999999 9999999999999999874
No 174
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.89 E-value=2.7e-09 Score=87.17 Aligned_cols=69 Identities=10% Similarity=0.275 Sum_probs=65.9
Q ss_pred EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCccccccccccccccee
Q 008120 30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lv 99 (577)
|+|.| +.+|+.+.+.|.+++++..|+.+.+++.|+++++|+|+|+|+.|. ++.|.++|++.+|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECC-TTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEE
Confidence 78899 578999999999999999999999999999999999999999999 9999999999999999975
No 175
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.87 E-value=3e-09 Score=94.21 Aligned_cols=80 Identities=10% Similarity=0.251 Sum_probs=74.8
Q ss_pred CCCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 26 SSESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 26 ~~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
....|+|+| +.+|+.+.+.|.+++++..|+...+++.|+++.+|+|+|.|+.|. ++.|.++|++.+|++|++++.+.+
T Consensus 23 ~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~-~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 23 ETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPID-ETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp CCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCC-SSSHHHHHHCSSEEEEEEECCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEcccC
Confidence 457799999 678999999999999999999999999999999999999999999 999999999999999999999888
Q ss_pred cc
Q 008120 105 LL 106 (577)
Q Consensus 105 ~m 106 (577)
++
T Consensus 102 g~ 103 (110)
T 2k8h_A 102 GL 103 (110)
T ss_dssp C-
T ss_pred cc
Confidence 75
No 176
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.85 E-value=1.9e-09 Score=90.85 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=62.0
Q ss_pred cccccccCCCceeEEe-eccCCchhhhHHHHHhhCCCCCCCCceEEEEC--CeecC---CCCcccccCCCCCCEEEEEE
Q 008120 106 LLITVRTSCGKELEFH-IDRYRNVGYLKQRIARKGKGFVDVVDQEIFCD--GEKLD---DQRLIDDICKDNDAVIHLLV 178 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~-Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~--Gr~Le---D~~tLsdy~I~~~svI~Lvv 178 (577)
|.|.||+.+|+.. ++ ++++.||.+||++|+++.+++ +++|+|+|+ ++.|+ |+.+|++|+|.+|++||+.-
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~--~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIA--PGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCC--TTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCC--ccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 6899999999654 77 999999999999999999986 899999997 47874 78999999999999999743
No 177
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.83 E-value=6.8e-09 Score=84.74 Aligned_cols=70 Identities=13% Similarity=0.225 Sum_probs=66.8
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
|.|.|++.+|+.+.+.|.+++++..|++..+++.|++ +++++++|.|+.|.+..|.++|++++|++|+++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCC--TTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 5788999999999999999999999999999999987 899999999999999999999999999999985
No 178
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.82 E-value=1e-08 Score=87.71 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=71.0
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecC
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKS 181 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks 181 (577)
..|.|.|++.+|+++.+.|.+++++..|++..+++.|++ +++++++|.|+.|.+..|.++|+++++++|+++++..
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 79 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 79 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCC--STTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 347899999999999999999999999999999999987 8999999999999999999999999999999987643
No 179
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.82 E-value=5.5e-09 Score=89.92 Aligned_cols=75 Identities=13% Similarity=0.196 Sum_probs=64.9
Q ss_pred CCcEEEEEE----eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcC-------eeccCCCCcccccccccccc
Q 008120 27 SESILIYLS----VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGG-------RELARNHSLVKDYGVTGGNV 95 (577)
Q Consensus 27 ~~sM~I~Vt----l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~G-------k~L~~D~~tL~dygI~dgst 95 (577)
...+.|+|+ .+|..+..++.++.||.+||.+|+..+|+|+..|+|+|.+ ..|.+|..+|++|||.+|++
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 345777774 4678999999999999999999999999999999999873 34777999999999999999
Q ss_pred cceeee
Q 008120 96 LHLVLK 101 (577)
Q Consensus 96 L~Lvlr 101 (577)
||+...
T Consensus 87 I~V~d~ 92 (97)
T 1wjn_A 87 LLVRWS 92 (97)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 998763
No 180
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.78 E-value=3.1e-09 Score=110.51 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=65.0
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEE---ECCeecCCCCcccccCCCCCCEEEEEEecC
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIF---CDGEKLDDQRLIDDICKDNDAVIHLLVQKS 181 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLi---f~Gr~LeD~~tLsdy~I~~~svI~Lvvrks 181 (577)
+.|+|+ .+|+++.++|++++||.+||++|++++|+| +++|+|+ |+|+.|+|..+|++|+|++|++|+|+....
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVp--p~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVR--PERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 577788 479999999999999999999999999987 9999999 899999999999999999999999975433
No 181
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.72 E-value=2.2e-08 Score=83.27 Aligned_cols=73 Identities=19% Similarity=0.174 Sum_probs=67.9
Q ss_pred ccccccccccCCCc-eeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 103 SDLLLITVRTSCGK-ELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk-~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
+..|.|.|++.+|+ .+.+.|.+++++..|++..+++.|++ +++++++|.|+.|.+..|..+|+++++++|+++
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLS--GHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCT--TCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 34578999999996 89999999999999999999999987 889999999999999999999999999999974
No 182
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.71 E-value=2.5e-08 Score=85.54 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=70.5
Q ss_pred ccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 103 SDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
...|.|.|++.+|+.+.+.|.+++++..|++..+++.|++ +++++++|.|+.|.+..|..+|++.++++|+++++.
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q 90 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQ 90 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCC--ccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeec
Confidence 3457888999999999999999999999999999999987 899999999999999999999999999999998763
No 183
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.62 E-value=6.6e-08 Score=85.05 Aligned_cols=75 Identities=13% Similarity=0.238 Sum_probs=70.1
Q ss_pred ccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 103 SDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
...|.|.|++ +|+++.+.|.+++++..|++..+++.|++ +++++++|.|+.|.+..|..+|+++++++|+++++.
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~--~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q 103 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 103 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCC--cccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeec
Confidence 4558899999 99999999999999999999999999987 899999999999999999999999999999998764
No 184
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.62 E-value=3.4e-08 Score=86.56 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=70.7
Q ss_pred ccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 103 SDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
...|.|.|++.+|+.+.+.|.+++++..|++..+++.+++ +++++|+|.|+.|.+..|..+|+++++++|+++++.
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q 97 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQ 97 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCC--TTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCC
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEec
Confidence 3457889999999999999999999999999999999987 899999999999999999999999999999998764
No 185
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.54 E-value=1.6e-07 Score=80.70 Aligned_cols=66 Identities=15% Similarity=0.054 Sum_probs=57.8
Q ss_pred CCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECC-------eec-CCCCcccccCCCCCCEEEEEEec
Q 008120 113 SCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDG-------EKL-DDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 113 ~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~G-------r~L-eD~~tLsdy~I~~~svI~Lvvrk 180 (577)
.+|+.+...+.++.||.+||.+|+..+|++ +..|+|.|.+ ..| +|.++|.+|++.+|++||+....
T Consensus 20 ~~~~~~e~~l~~~~TV~~LK~~i~~~~gip--~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~ 93 (97)
T 1wjn_A 20 PERQILEKQLPDSMTVQKVKGLLSRLLKVP--VSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSG 93 (97)
T ss_dssp SSSCCEEEEEETTSBHHHHHHHHHTTTTCC--TTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHCCC--hhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEecC
Confidence 467889999999999999999999999987 8999999873 225 77899999999999999986643
No 186
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.53 E-value=4.4e-08 Score=86.72 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=71.3
Q ss_pred ccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecC
Q 008120 103 SDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKS 181 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks 181 (577)
...|.|.|++.+|+.+.+.|.+++++..|++..+++.+++ +++|+|+|.|+.|.+..|..+|+++++++|++++...
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~--~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~ 100 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGIS--RNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQT 100 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCC--SSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEccc
Confidence 4558899999999999999999999999999999999987 8899999999999999999999999999999987643
No 187
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.1e-06 Score=85.34 Aligned_cols=80 Identities=9% Similarity=0.129 Sum_probs=74.8
Q ss_pred CCCcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 26 SSESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 26 ~~~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
+.+.|+|.|..+|+.+.+.|.+++++..|+...+++.|+++.++|++|.|+.|. ++.|.+++++.+|++|++++.+.++
T Consensus 26 ~~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~-~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 26 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp CCCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred CCCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeccCcC
Confidence 367799999778999999999999999999999999999999999999999999 9999999999999999999998665
Q ss_pred c
Q 008120 106 L 106 (577)
Q Consensus 106 m 106 (577)
-
T Consensus 105 ~ 105 (200)
T 3pge_A 105 G 105 (200)
T ss_dssp C
T ss_pred c
Confidence 3
No 188
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.29 E-value=9.7e-07 Score=84.78 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=75.1
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecccc
Q 008120 27 SESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLL 106 (577)
Q Consensus 27 ~~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~m 106 (577)
.+.|+|.|..+|+.+.+.|.+++++..|+....++.|+++.+++++|+|+.|. ++.|.+++++.+|++|++++...++.
T Consensus 55 ~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~-~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 55 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQ-ADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECC-SSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred CCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecC-CCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 56688888778999999999999999999999999999999999999999999 99999999999999999999998875
Q ss_pred c
Q 008120 107 L 107 (577)
Q Consensus 107 ~ 107 (577)
.
T Consensus 134 ~ 134 (207)
T 3tix_A 134 P 134 (207)
T ss_dssp G
T ss_pred c
Confidence 3
No 189
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.25 E-value=1.9e-06 Score=76.70 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=69.0
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeee
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrL 102 (577)
.+.|+|.| ..+|+.+.+.|.+++++..|+...+++.|+++.+++++|.|+.|. ++.|.+++++.+|++|.+.+.-
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~-~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECC-TTCCTTTTTCCTTCEEEEEECC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECC-CCCCHHHcCCCCCCEEEEEeec
Confidence 46788888 578889999999999999999999999999999999999999998 9999999999999999988653
No 190
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.16 E-value=5.4e-06 Score=73.81 Aligned_cols=75 Identities=12% Similarity=0.270 Sum_probs=69.4
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEec
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQK 180 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrk 180 (577)
..+.|.|++.+|+.+.|.|.++++...|++..+++.|++ +.+++++|.|+.|.+..|..++++.++++|++++.+
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~--~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC--TTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCC--hhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 346788888899999999999999999999999999986 899999999999999999999999999999998753
No 191
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=98.13 E-value=2.1e-06 Score=89.36 Aligned_cols=139 Identities=18% Similarity=0.209 Sum_probs=88.5
Q ss_pred ccccCCCCcEEEEEcCCCCeeEEEEecCCCCCcccCCCCCCCCCCCCCCccCCcccCCchhhhhhhhhhccCCCCCCCCc
Q 008120 266 IRSSDGTGGTYFMQDSTGHEYVSVFKPIDEEPKAVNNPRGLPVSLDGEGLKRGTRVGEGALREVAAYVLDHPKSGPRSLS 345 (577)
Q Consensus 266 ~~~~~Gs~gsyf~~~~~g~~~~aVFKP~deEp~~~~nP~~~~~~~~~~~~~~g~~~geg~~rEvAAyllD~~~~~~~~~~ 345 (577)
.++..|++|.|||... + ...|.|+.. . -..|+=||.|=
T Consensus 75 ~~s~~Gstgvff~~td-~--~~~VVK~s~---------~--------------------l~~E~l~s~LA---------- 112 (342)
T 1cja_A 75 ERSEKGTEGLFFVETE-S--GVFIVKRST---------N--------------------IESETFCSLLC---------- 112 (342)
T ss_dssp EECCSTTSCEEEEEES-S--CEEEEECCT---------T--------------------HHHHHHHHHHH----------
T ss_pred EeccCCCCCeEEEEeC-C--CEEEEeCcH---------H--------------------HHHHHHHHHHH----------
Confidence 4678999999999973 3 388899652 1 36888888884
Q ss_pred ccccCCCCCCceeEEEeccCCcc-CC------ccccc--ccCCC-cceeEeeeccCCCCCCCCC----CCCcchh---hh
Q 008120 346 GETMGFAGIPPTVMVRCLHEGFN-HP------EGYEH--ALKNV-KLGSLQMFMKNDGNCEDMG----PGAFPVE---EV 408 (577)
Q Consensus 346 ~~~lgf~~VP~T~~v~~~~~~f~-~~------~~~~~--~~~~~-k~GSlQ~fv~~~~~~~~~~----~~~f~~~---ev 408 (577)
..||. -+|...+++...+-|. +. +.... ..+.. ...=++.|+++..-. ++. ...|..+ ++
T Consensus 113 -~~LGl-piP~~Riv~~~~~E~~e~~~~L~~~~~~~~~l~~l~~~~~~l~meyv~G~~L~-e~~~~~~~~~f~~~~~k~L 189 (342)
T 1cja_A 113 -MRLGL-HAPKVRVVSSNSEEGTNMLECLAAIDKSFRVITTLANQANILLMELVRGITLN-KLTTTSAPEVLTKSTMQQL 189 (342)
T ss_dssp -HHHTC-CCCCEEEEESSSHHHHHHHHHHHHHCSSSCHHHHHTTCSEEEEEECCCEEEST-TCCSSSHHHHSCHHHHHHH
T ss_pred -HHhCC-CCCCeeEEeeCcHHHHHHHHHHHHhhhhhHHHHHhhcccceehhhhcCCCccc-cchhhhhhhhcCHHHHHhh
Confidence 57888 7899999987643110 00 00000 00011 122458888754311 111 1224333 34
Q ss_pred hhheeeeeeeccCCCC------C---CceEEeeCCCCceEEeeeecCCcCCCC
Q 008120 409 HKISVFDIRMANADRH------A---GNILIGKGDNGQTVLIPIDHGYCLPEN 452 (577)
Q Consensus 409 ~ki~ilD~~i~N~DR~------~---gNiLv~~~~~g~~~l~~IDhGl~fp~~ 452 (577)
-||.+||+.++|.||- . +|||+..+ ++ ++++|||+.||-++
T Consensus 190 G~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~~~-n~--~~~~IDhn~af~~~ 239 (342)
T 1cja_A 190 GSLMALDVIVNNSDRLPIAWTNEGNLDNIMLSER-GA--TVVPIDSKIIPLDA 239 (342)
T ss_dssp HHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEESB-TT--CEEECSCCCCCCCS
T ss_pred chhheehhhhcCCccCcccccCCCChhheEEeCC-CC--eEEEEcCCccccCC
Confidence 5799999999999997 3 36788762 23 69999999999865
No 192
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.99 E-value=7.9e-07 Score=86.47 Aligned_cols=80 Identities=10% Similarity=0.164 Sum_probs=1.2
Q ss_pred CCCcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 26 SSESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 26 ~~~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
+.+.|+|.|+.+|+.+.+.|.+++++..|+...+++.|++++++|++|+|+.|. ++.|.+++++.+|++|++++...||
T Consensus 18 p~e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~-dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCCeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecC-CCCCHHHcCCCCCCEEEEEecccCC
Confidence 367799999778999999999999999999999999999999999999999999 9999999999999999999998887
Q ss_pred c
Q 008120 106 L 106 (577)
Q Consensus 106 m 106 (577)
.
T Consensus 97 ~ 97 (227)
T 3v7o_A 97 L 97 (227)
T ss_dssp C
T ss_pred c
Confidence 4
No 193
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.91 E-value=1.8e-05 Score=68.00 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=44.0
Q ss_pred EEEEE-Ee-CCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeecc
Q 008120 30 ILIYL-SV-SGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELA 79 (577)
Q Consensus 30 M~I~V-tl-~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~ 79 (577)
.-|+| .+ .+..+.+.+.+++||..+|++|++++|||+.+|+|+|.|+.|.
T Consensus 13 kvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 13 MVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp EEEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred eeEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 34566 43 6789999999999999999999999999999999999997654
No 194
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.86 E-value=8.4e-06 Score=67.92 Aligned_cols=71 Identities=13% Similarity=0.209 Sum_probs=60.0
Q ss_pred CcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCee-----ccCCCCccccccccccccccee
Q 008120 28 ESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRE-----LARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 28 ~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~-----L~~D~~tL~dygI~dgstL~Lv 99 (577)
..|.|.|.....++.+++++++|+.+|+++|++..++++..|.|+++-.+ +. ++.+|+++||+.|++|.+.
T Consensus 3 ~~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~-~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITAS-SSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSC-CCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCC-CCCCHHHcCCCCCCEEEEe
Confidence 45888896555688899999999999999999999999999988876554 34 7889999999999998764
No 195
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.81 E-value=3.2e-05 Score=75.17 Aligned_cols=77 Identities=13% Similarity=0.228 Sum_probs=69.2
Q ss_pred ccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecCC
Q 008120 103 SDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSA 182 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks~ 182 (577)
..-+.|.|+ .+|+.+.+.|.+++++..|++..+++.|++ +.++|++|.|+.|.+..|..++++.+|++|++++..-.
T Consensus 27 ~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~--~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~g 103 (200)
T 3pge_A 27 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 103 (200)
T ss_dssp CCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSC
T ss_pred CCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCC--hhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCc
Confidence 444667776 489999999999999999999999999987 89999999999999999999999999999999887543
No 196
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.69 E-value=0.0011 Score=69.47 Aligned_cols=120 Identities=12% Similarity=0.069 Sum_probs=98.2
Q ss_pred cEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhC----CccccEEEEE------cCeeccCCCCcccccccccccccce
Q 008120 29 SILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKG----FVVKKQKLVF------GGRELARNHSLVKDYGVTGGNVLHL 98 (577)
Q Consensus 29 sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~G----ip~~~QrLif------~Gk~L~~D~~tL~dygI~dgstL~L 98 (577)
++.+.|.+.+.+.++..+|+.||.++..+|.++.. .+.++--|+. .|+=|. ++++|..|++++|+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~-~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 3 ALSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLE-AGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECC-TTSBGGGGTCCTTCEEEE
T ss_pred cEEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEecc-CCCCHHHhCCCCCceeec
Confidence 45566655688999999999999999999977753 3567777776 244577 788999999999998876
Q ss_pred eeeeccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEEC
Q 008120 99 VLKLSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCD 153 (577)
Q Consensus 99 vlrLsd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~ 153 (577)
.-+. +.+.|...+|....+.|+.+.|+.++=+.|+...|+. ..+.-.|.+.
T Consensus 82 ~~~~---~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~-e~~~FgL~~~ 132 (371)
T 3ivf_A 82 RKKQ---RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGIT-NHDEYSLVRE 132 (371)
T ss_dssp EECE---EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCS-CGGGEEEECC
T ss_pred cCce---eEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCC-CccccEEEEE
Confidence 5443 6888999999999999999999999999999999976 4666777764
No 197
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.67 E-value=4.6e-05 Score=73.23 Aligned_cols=77 Identities=13% Similarity=0.220 Sum_probs=69.1
Q ss_pred ccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecCC
Q 008120 103 SDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSA 182 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks~ 182 (577)
..-+.|.|+ .+|+.+.|.|.+++++..|++..+++.|++ +.+++++|.|+.|.+..|..++++.++++|++++.+..
T Consensus 55 ~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~--~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 55 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIG 131 (207)
T ss_dssp CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCC--GGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred CCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCC--cccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 344667776 489999999999999999999999999987 89999999999999999999999999999999877544
No 198
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.62 E-value=3e-05 Score=64.57 Aligned_cols=69 Identities=9% Similarity=0.133 Sum_probs=56.7
Q ss_pred ccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCee-----cCCCCcccccCCCCCCEEEE
Q 008120 105 LLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEK-----LDDQRLIDDICKDNDAVIHL 176 (577)
Q Consensus 105 ~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~-----LeD~~tLsdy~I~~~svI~L 176 (577)
.|.|-||+.+| .+.++++++.|+.+|+++|++..+++ ++.|.|.++-.. +.++.+|+++|+++|+.|++
T Consensus 4 ~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~--~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l 77 (80)
T 2pjh_A 4 SIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQ--NNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFL 77 (80)
T ss_dssp CCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCC--TTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC
T ss_pred cEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCC--CCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEE
Confidence 46778888877 66788999999999999999999986 677776654433 34788999999999999986
No 199
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.54 E-value=0.00025 Score=69.21 Aligned_cols=94 Identities=12% Similarity=0.152 Sum_probs=80.7
Q ss_pred CCCCcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 25 SSSESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 25 ~~~~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
.+.+.|.|.|.-+|+.+.+.|..++++..|+...+++.|+++++++++|.|+.+. ++.+..+..+.++++|.+..+..+
T Consensus 17 ~~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~-~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 17 KPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp -CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECC-TTCCTTTTTCCTTEEEEEECSCTT
T ss_pred CCCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEecc-CCCChHHhhhcccccchhhccccc
Confidence 4578899999547888999999999999999999999999999999999999999 999999999999999999988887
Q ss_pred ccccccccCCCceeEE
Q 008120 105 LLLITVRTSCGKELEF 120 (577)
Q Consensus 105 ~m~I~Vrt~~Gk~~~i 120 (577)
+.. ++.+.+|-.+.+
T Consensus 96 g~t-~~~~~sGl~~~v 110 (209)
T 3uf8_A 96 GST-VVTTESGLKYED 110 (209)
T ss_dssp CCC-CEECTTSCEEEE
T ss_pred ccc-ccCCCCceEEEE
Confidence 653 444556654443
No 200
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.38 E-value=2.3e-05 Score=82.21 Aligned_cols=84 Identities=8% Similarity=0.137 Sum_probs=4.1
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecccc
Q 008120 27 SESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLL 106 (577)
Q Consensus 27 ~~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~m 106 (577)
.+.|+|.|.-+|+.+.+.|..++++..|+...+++.|+++++++++|.|+.|. ++.|.+++++++|++|++.....++|
T Consensus 19 ~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~-~~~TP~~L~MEDgD~Idv~~~Q~g~~ 97 (360)
T 3ix6_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGGM 97 (360)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECC-CCCChHHcCCCccchhhhhhccCchH
Confidence 56788888447889999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccc
Q 008120 107 LITVR 111 (577)
Q Consensus 107 ~I~Vr 111 (577)
..+..
T Consensus 98 ~~Yl~ 102 (360)
T 3ix6_A 98 RTYLD 102 (360)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 201
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.29 E-value=0.00071 Score=55.90 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=62.0
Q ss_pred cEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccc-cEEEEEcCeeccCCCCcccccccccccccceee
Q 008120 29 SILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVK-KQKLVFGGRELARNHSLVKDYGVTGGNVLHLVL 100 (577)
Q Consensus 29 sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~-~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvl 100 (577)
-+.+.+ .....-+.+.|.++.+|.+|-..-..+.||+++ ..+|.|.|..|. .+.++++|++.+|+.|.+++
T Consensus 9 ~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLd-p~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 9 LITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLD-PNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECC-TTSBGGGSSCCTTCEEEEEC
T ss_pred HHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccC-ccCChhhhCCcCCceeeeee
Confidence 344444 334467889999999999999999999999999 899999999998 99999999999999998875
No 202
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.27 E-value=4e-05 Score=74.62 Aligned_cols=80 Identities=14% Similarity=0.238 Sum_probs=0.0
Q ss_pred eeeccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 100 LKLSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 100 lrLsd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
.....-|.|.| +.+|+++.|.|.++++...|++..+++.|++ ++++|++|+|+.+.+..|..++++++|++|+++..
T Consensus 16 ~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs--~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~le 92 (227)
T 3v7o_A 16 VKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCC--ccceEEEECCEecCCCCCHHHcCCCCCCEEEEEec
Confidence 34456678888 7899999999999999999999999999987 89999999999999999999999999999999876
Q ss_pred cCC
Q 008120 180 KSA 182 (577)
Q Consensus 180 ks~ 182 (577)
+..
T Consensus 93 Q~G 95 (227)
T 3v7o_A 93 QIG 95 (227)
T ss_dssp ---
T ss_pred ccC
Confidence 543
No 203
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.27 E-value=0.00074 Score=58.29 Aligned_cols=73 Identities=14% Similarity=0.338 Sum_probs=65.8
Q ss_pred CCCcEEEEE-EeCCe-EEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCccccccccccccccee
Q 008120 26 SSESILIYL-SVSGS-LVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 26 ~~~sM~I~V-tl~G~-~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lv 99 (577)
.++.|.|.| ..+|+ .+.+.|.+++++..|...-.++.|++++.-+++|.|..|. .+.|..++++.+|++|.+.
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~-~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLS-GRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECC-SCSCHHHHTCCTTEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEe
Confidence 356788888 46774 8999999999999999999999999999999999999998 9999999999999998764
No 204
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.25 E-value=0.00092 Score=55.23 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=63.3
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCC-ceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVV-DQEIFCDGEKLDDQRLIDDICKDNDAVIHLLV 178 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~-~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvv 178 (577)
+.+.+++.....+.+.|.++.+|..|-..-..+.+++ ++ ..+|.|.|..|..+.++.||.+.+++.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~--~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKIS--FHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCC--CCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCC--cCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 3455666777889999999999999999999999987 55 99999999999999999999999999998764
No 205
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.23 E-value=0.00068 Score=58.18 Aligned_cols=64 Identities=16% Similarity=0.271 Sum_probs=49.8
Q ss_pred CCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeec--CCCCcccccC-CCCCCEEEEEE
Q 008120 113 SCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKL--DDQRLIDDIC-KDNDAVIHLLV 178 (577)
Q Consensus 113 ~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~L--eD~~tLsdy~-I~~~svI~Lvv 178 (577)
..+..+.+.+++++||..+|++|++++|++ +.+|+|+|.|+.| +..+.-..|. -.....|.|+-
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp--~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKII--SSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCC--GGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCC--HHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 457888899999999999999999999997 9999999999775 4444445554 34555565544
No 206
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.11 E-value=0.0026 Score=54.55 Aligned_cols=75 Identities=16% Similarity=0.251 Sum_probs=69.6
Q ss_pred CCCcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120 26 SSESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 26 ~~~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
..+.|+|.|..+|....+.|..++....|...-.++.|+.++.-+++|.|..+. ++.|-++.++.+|++|.+++.
T Consensus 18 ~~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~-~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 18 TPRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELS-PTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp CCCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECC-TTSCHHHHTCCSSCEEEEEEC
T ss_pred CCCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCC-CCCCHhHcCCCCCCEEEEEEe
Confidence 466699999768899999999999999999999999999999999999999998 999999999999999988764
No 207
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.01 E-value=0.0021 Score=62.64 Aligned_cols=82 Identities=13% Similarity=0.206 Sum_probs=70.5
Q ss_pred eeeeeccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 98 LVLKLSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 98 LvlrLsd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
-.+...+-+.|.|++ +|+.+.|.|.++++...|++..+++.|++ +++++++|.|+.+.+..+..++...++++|.+.
T Consensus 14 ~~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~--~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~ 90 (209)
T 3uf8_A 14 PEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90 (209)
T ss_dssp ----CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred ceeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCC--hheEEEEECCEeccCCCChHHhhhcccccchhh
Confidence 344456667888887 78899999999999999999999999987 999999999999999999999999999999987
Q ss_pred EecCC
Q 008120 178 VQKSA 182 (577)
Q Consensus 178 vrks~ 182 (577)
..+..
T Consensus 91 ~eq~G 95 (209)
T 3uf8_A 91 REQIG 95 (209)
T ss_dssp CSCTT
T ss_pred ccccc
Confidence 66444
No 208
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.91 E-value=0.00014 Score=77.00 Aligned_cols=84 Identities=8% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecccc
Q 008120 27 SESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLL 106 (577)
Q Consensus 27 ~~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~m 106 (577)
.+.|.|.|.-+|+...+.|..+++...|+....++.|+++.+++++|+|+.|. ++.|.+++++.+|++|.+.+...++.
T Consensus 28 ~~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~-~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 28 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEeeeeecccccc
Confidence 45677777337788899999999999999999999999999999999999999 99999999999999999999888877
Q ss_pred ccccc
Q 008120 107 LITVR 111 (577)
Q Consensus 107 ~I~Vr 111 (577)
..+++
T Consensus 107 n~~~~ 111 (389)
T 4da1_A 107 NLYFQ 111 (389)
T ss_dssp -----
T ss_pred cccee
Confidence 66554
No 209
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=96.85 E-value=0.0025 Score=54.93 Aligned_cols=73 Identities=21% Similarity=0.211 Sum_probs=64.8
Q ss_pred ccccccccccCCCc-eeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 103 SDLLLITVRTSCGK-ELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk-~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
...+.|.|+..+|+ .+.+.|.++++...|...-+++.++. ++..+++|.|+.|....|..++++.++++|.++
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~--~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLS--GRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCS--SSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 34467777777885 78999999999999999999999986 889999999999999999999999999999864
No 210
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.83 E-value=0.0023 Score=54.29 Aligned_cols=75 Identities=9% Similarity=-0.009 Sum_probs=67.1
Q ss_pred ccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 103 SDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
.++|.|+|-..+|+..++.|.++.++.++-+.-.+++|+. +++..|.|+++.|+-...+.-.|+.+|+.+.|+..
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~--~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN--PSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC--GGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC--hhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 4678999999999999999999999999999999999986 88999999999998889999999999999999654
No 211
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.54 E-value=0.0035 Score=52.30 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=58.2
Q ss_pred CcEEEEEEe---CCeEEEEEeCCCCCHHHHHHHHHHhhCCccc-----cEEEEEcCeeccCCCCcccccccccccccce
Q 008120 28 ESILIYLSV---SGSLVPMRVLETDSIESVKLRIQTCKGFVVK-----KQKLVFGGRELARNHSLVKDYGVTGGNVLHL 98 (577)
Q Consensus 28 ~sM~I~Vtl---~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~-----~QrLif~Gk~L~~D~~tL~dygI~dgstL~L 98 (577)
..|+|++.+ .++++.++++-..||..|+..+.+..+++.. ..|+.-.|..|. ++..|+||+|.+|+.|.+
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~-~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFS-GECKLSDCGITNGDRLEI 80 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEE-TTSBTGGGTCCTTCEEEE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEc-CCCEEeeCCcCCCCEEEE
Confidence 456667755 7899999999999999999999999987652 235556688898 999999999999998764
No 212
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=96.31 E-value=0.011 Score=50.75 Aligned_cols=73 Identities=8% Similarity=0.025 Sum_probs=66.2
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecC
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKS 181 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks 181 (577)
+.|.|+ ..|.+..|.+.+++.-..|.+.-+.+.|+. ++..++.|.|..+.+..|-.+++++++++|..++-+|
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~--~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~~ 94 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVS--PSRILLLFGETELSPTATPRTLKLGVADIIDCVVLTS 94 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSC--GGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECCC
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCC--hhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEecC
Confidence 567777 478999999999999999999999999986 9999999999999999999999999999999877554
No 213
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.29 E-value=0.00066 Score=71.26 Aligned_cols=80 Identities=14% Similarity=0.219 Sum_probs=0.0
Q ss_pred eeeeccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 008120 99 VLKLSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLV 178 (577)
Q Consensus 99 vlrLsd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvv 178 (577)
+......+.|.|++ +|++..+.|.++++...|++..+++.|++ ++.++++|+|+.+.+..|..++++++|++|+++.
T Consensus 15 ~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~--~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~ 91 (360)
T 3ix6_A 15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCC--cceEEEEECCeECCCCCChHHcCCCccchhhhhh
Confidence 33455667888887 68899999999999999999999999986 8999999999999999999999999999999987
Q ss_pred ecC
Q 008120 179 QKS 181 (577)
Q Consensus 179 rks 181 (577)
.+.
T Consensus 92 ~Q~ 94 (360)
T 3ix6_A 92 EQI 94 (360)
T ss_dssp ---
T ss_pred ccC
Confidence 543
No 214
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.22 E-value=0.0056 Score=51.96 Aligned_cols=74 Identities=12% Similarity=0.046 Sum_probs=65.7
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
...|.|.| ..+++..++.|.|+.|+.++-+...+++|+.+++-.|.|++++|. -...++-.||.+|++|.|+..
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lD-LSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLD-LSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEES-SSCBHHHHCCCSSCEEEEECS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEecc-ccceeEecCCCCCCEEEEEEc
Confidence 56688888 678999999999999999999999999999999999999999997 889999999999999988754
No 215
>3akj_A CTKA; protein kinase, transferase; 2.00A {Helicobacter pylori} PDB: 3akk_A* 3akl_A*
Probab=96.20 E-value=0.0011 Score=68.67 Aligned_cols=45 Identities=31% Similarity=0.387 Sum_probs=36.3
Q ss_pred hhhhhheeeeeeeccCCCCCCceEEeeCCC-CceEEee-eecCCcCC
Q 008120 406 EEVHKISVFDIRMANADRHAGNILIGKGDN-GQTVLIP-IDHGYCLP 450 (577)
Q Consensus 406 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~-g~~~l~~-IDhGl~fp 450 (577)
+++-++.|||++|+|+|||++||=+-.+.+ |.++|.| .|||.++.
T Consensus 139 ~~~~~~~vfn~LIgN~D~H~kN~s~l~~~~tg~~~LAP~YD~~~s~~ 185 (325)
T 3akj_A 139 CFFWDMFVADTLLGNFDRHNGNWGFLRASNSKEYQIAPIFDCGSCLY 185 (325)
T ss_dssp HHHHHHHHHHHHHTCSCCCGGGCEEEEESSSSCEEECCBCCCTTSSC
T ss_pred HHHHHHHHhhHhhcCCCCCCcCeEEEEECCCCCEEecCccccccccc
Confidence 457799999999999999999984444223 6789999 59998874
No 216
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.13 E-value=0.0037 Score=56.52 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=57.1
Q ss_pred ccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCc------------------------------------eEE
Q 008120 107 LITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVD------------------------------------QEI 150 (577)
Q Consensus 107 ~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~------------------------------------QrL 150 (577)
.+.|++.+|...++.|+.+.||.+++..|+.+.|+.. .++ |+|
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n-~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL 91 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITN-HDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKL 91 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCC-CSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCC-cccccccccccccccccCchhhccccccccchhHHHHHHHHh
Confidence 6889999999999999999999999999999999862 322 333
Q ss_pred EE--CCeecCCCCcccccCCCCCCEEEE
Q 008120 151 FC--DGEKLDDQRLIDDICKDNDAVIHL 176 (577)
Q Consensus 151 if--~Gr~LeD~~tLsdy~I~~~svI~L 176 (577)
-. .+..|++.++|.++||.++++|.|
T Consensus 92 ~~dd~~~WLD~srtL~EQGI~e~~tllL 119 (128)
T 2kc2_A 92 HTDDELNWLDHGRTLREQGVEEHETLLL 119 (128)
T ss_dssp CCSSSEEEECSSSCHHHHTCCTTSEEEE
T ss_pred cccCCCCcccCCCcHHHcCCCCCCEEEE
Confidence 21 236788899999999999999765
No 217
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=95.51 E-value=0.0023 Score=67.67 Aligned_cols=76 Identities=13% Similarity=0.227 Sum_probs=0.0
Q ss_pred ccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEecC
Q 008120 103 SDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKS 181 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvrks 181 (577)
.+.+.|.|++ +|.+..|.|.++++...|++..+++.|++ +.+++++|+|+.+.+..|..++++.++++|.+++.+-
T Consensus 28 ~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~--~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~ 103 (389)
T 4da1_A 28 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQI 103 (389)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccc
Confidence 3456777777 78888899999999999999999999986 9999999999999999999999999999999987543
No 218
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=95.50 E-value=0.026 Score=47.01 Aligned_cols=64 Identities=8% Similarity=0.051 Sum_probs=55.2
Q ss_pred CCCceeEEeeccCCchhhhHHHHHhhCCCCCCC---CceEEEECCeecCCCCcccccCCCCCCEEEE
Q 008120 113 SCGKELEFHIDRYRNVGYLKQRIARKGKGFVDV---VDQEIFCDGEKLDDQRLIDDICKDNDAVIHL 176 (577)
Q Consensus 113 ~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~---~~QrLif~Gr~LeD~~tLsdy~I~~~svI~L 176 (577)
..++++-+.+....||..|++-+.+.+++..+. .+.++.-.|..|.+...|.||+|.+|+.|.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 578999999999999999999999999865322 2456777899999999999999999999875
No 219
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.30 E-value=0.0091 Score=53.96 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=55.6
Q ss_pred EEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHhhCCccc-------------------------------------cEEEE
Q 008120 31 LIYLS-VSGSLVPMRVLETDSIESVKLRIQTCKGFVVK-------------------------------------KQKLV 72 (577)
Q Consensus 31 ~I~Vt-l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~-------------------------------------~QrLi 72 (577)
.+.|+ ++|...++.|+.+.||.+++..|..+.||+.. +|+|-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 56774 68999999999999999999999999999854 34442
Q ss_pred E--cCeeccCCCCcccccccccccccceeee
Q 008120 73 F--GGRELARNHSLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 73 f--~Gk~L~~D~~tL~dygI~dgstL~Lvlr 101 (577)
. .+.-|. ++.+|.++||.++++|.|.-+
T Consensus 93 ~dd~~~WLD-~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLD-HGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEEC-SSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCccc-CCCcHHHcCCCCCCEEEEEEE
Confidence 2 124454 899999999999999776543
No 220
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=94.79 E-value=0.076 Score=43.91 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=61.3
Q ss_pred CCCcEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEE--EcCeecc--CCCCcccccccccccccceee
Q 008120 26 SSESILIYLSV-SGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLV--FGGRELA--RNHSLVKDYGVTGGNVLHLVL 100 (577)
Q Consensus 26 ~~~sM~I~Vtl-~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLi--f~Gk~L~--~D~~tL~dygI~dgstL~Lvl 100 (577)
+....+|.|++ +|+.+.-....++||.+|..-|.. .+.+.....|+ |-.+.|. +.+.+|.+.|+.++.+|.|..
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 45667888864 788888899999999999999998 67777888988 4578885 467899999999999887653
No 221
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=94.37 E-value=0.14 Score=44.56 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=63.2
Q ss_pred CCCCCCcEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEE--EcCeecc--CCCCcccccccccccccc
Q 008120 23 GRSSSESILIYLSV-SGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLV--FGGRELA--RNHSLVKDYGVTGGNVLH 97 (577)
Q Consensus 23 ~~~~~~sM~I~Vtl-~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLi--f~Gk~L~--~D~~tL~dygI~dgstL~ 97 (577)
+.......+|.|++ +|+.+.-+...++||.+|.+-|....+.+.....|+ |-.|.|. +.+.+|.+.|+.+..+|.
T Consensus 7 ~~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~ 86 (109)
T 2dzk_A 7 GRDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVV 86 (109)
T ss_dssp CCCCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEE
T ss_pred CCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEE
Confidence 33445678899964 789999999999999999999999888776777777 5577886 457899999999988876
Q ss_pred eee
Q 008120 98 LVL 100 (577)
Q Consensus 98 Lvl 100 (577)
+..
T Consensus 87 v~~ 89 (109)
T 2dzk_A 87 LLP 89 (109)
T ss_dssp EEC
T ss_pred EEE
Confidence 654
No 222
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=93.92 E-value=0.11 Score=47.35 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=52.9
Q ss_pred CCcEEEEE-EeC------CeEEEEEeCCCCCHHHHHHHHHHh--hCCccc------cEEEEE----cCe-eccCCC----
Q 008120 27 SESILIYL-SVS------GSLVPMRVLETDSIESVKLRIQTC--KGFVVK------KQKLVF----GGR-ELARNH---- 82 (577)
Q Consensus 27 ~~sM~I~V-tl~------G~~~~leV~~sdTV~~LK~kI~~~--~Gip~~------~QrLif----~Gk-~L~~D~---- 82 (577)
-..|.|+| ... ...+++.|...|||.++|+||-+. .|+|.+ +.-|-+ .|+ .|. |.
T Consensus 22 y~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~-D~D~tS 100 (138)
T 2r2o_A 22 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILS-DEDVTS 100 (138)
T ss_dssp CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEEC-SSSTTC
T ss_pred eEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEee-ccCCcc
Confidence 35577777 321 256899999999999999999876 566653 334444 143 355 32
Q ss_pred ---------Ccccccccccccccceeeeecc
Q 008120 83 ---------SLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 83 ---------~tL~dygI~dgstL~LvlrLsd 104 (577)
.||+.|+|.+|++|.|+.+.+.
T Consensus 101 ~~~~~wkrLNTL~HY~V~Dga~l~l~~~~~~ 131 (138)
T 2r2o_A 101 EVQGLWRRLNTLQHYKVPDGATVALVPCLTK 131 (138)
T ss_dssp CEETTEEECCBHHHHTCCTTCEEEEEEC---
T ss_pred cccCCceeecchhccCCCCCCEEEEEECCCc
Confidence 2899999999999998877653
No 223
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=93.39 E-value=0.12 Score=45.43 Aligned_cols=75 Identities=23% Similarity=0.303 Sum_probs=49.9
Q ss_pred CCcEEEEEEe---CCeEEEEEeCCCCCHHHHHHHHHHh--hCCccc------cEEEEEc----CeeccCCC---------
Q 008120 27 SESILIYLSV---SGSLVPMRVLETDSIESVKLRIQTC--KGFVVK------KQKLVFG----GRELARNH--------- 82 (577)
Q Consensus 27 ~~sM~I~Vtl---~G~~~~leV~~sdTV~~LK~kI~~~--~Gip~~------~QrLif~----Gk~L~~D~--------- 82 (577)
-.+|.++|.. .+..+++.|...|||.++|+||-.. .|.|.+ +..|-+. |+.|.+.+
T Consensus 9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w 88 (111)
T 4e71_A 9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRW 88 (111)
T ss_dssp CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcc
Confidence 3456667632 3467889999999999999999765 466544 3446552 56666322
Q ss_pred ---Ccccccccccccccceeee
Q 008120 83 ---SLVKDYGVTGGNVLHLVLK 101 (577)
Q Consensus 83 ---~tL~dygI~dgstL~Lvlr 101 (577)
.||++|+|.+|++|.|+.+
T Consensus 89 krLNTL~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 89 KRVNTLMHYNVRDGATLILSKV 110 (111)
T ss_dssp CCCCBHHHHTCCTTCEEEEEEC
T ss_pred eEecchhhcCCCCCCEEEEEeC
Confidence 3788999999999977643
No 224
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=93.05 E-value=0.19 Score=41.43 Aligned_cols=68 Identities=13% Similarity=0.087 Sum_probs=54.9
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEE
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIF--CDGEKL---DDQRLIDDICKDNDAVIHL 176 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLi--f~Gr~L---eD~~tLsdy~I~~~svI~L 176 (577)
..|.||..+|+.+.-....++||.+|..-|... +.. ....+|+ |-.+.| +...+|.+.++.++++|.+
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~-~~~--~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~v 80 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVASK-GFP--WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFL 80 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHT-TCC--TTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHc-CCC--CCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEE
Confidence 466777788888887888999999999999884 433 6777888 557888 3478999999999999886
No 225
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=92.89 E-value=0.95 Score=51.40 Aligned_cols=140 Identities=21% Similarity=0.328 Sum_probs=83.0
Q ss_pred hhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCCC--ChhHHHHHHcCChH
Q 008120 407 EVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPY--SPQTVDYIKSLDAE 484 (577)
Q Consensus 407 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~Pf--s~~~~~~i~~Ld~~ 484 (577)
.+--.+|.=|++.=.|||.+|||+.. +|+ ++.||=|.||-... . |. ..|| +++.++.+-....+
T Consensus 537 SlA~~Svv~YILGlGDRH~~NILid~--tG~--v~HIDFG~~f~~~p---~------pe-~VPFRLT~~mv~~mG~~g~e 602 (696)
T 2x6h_A 537 SCAGYCVITYLLGVGDRHLDNLLLTT--NGK--LFHIDFGYILGRDP---K------PM-PPPMKLSKEMVEAMGGISSE 602 (696)
T ss_dssp HHHHHHHHHHHHTCCCCCTTTEEECT--TSC--EEECCCCSCTTCCS---S------SC-CCSSCCCHHHHHHTTSSSSH
T ss_pred HHHHHHHHHHHccCCCCCCcceEEeC--CCC--EEEEeehhhhccCC---C------Cc-CCCeecCHHHHHHhCCCCcc
Confidence 35567788899999999999999985 677 99999999996431 1 11 3444 56665554433322
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccCCCC-CChHHHHHHHHHhhcCCCCChHHHHHH
Q 008120 485 QDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNK-ESVIEEIVREAQDSLLPGISEAAFLET 563 (577)
Q Consensus 485 ~d~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~~~~~-~s~le~~~~~a~~~~~~~~~~~~f~~~ 563 (577)
. ...++.. -+..+++||-..- .+..+..+|.+..+.. .+.=+..+...++.+.++.+|+.-.+.
T Consensus 603 g-~~~Fr~~----c~~~~~~LR~~~~----------~il~ll~lml~~~lp~~~~~~~~~i~~l~~rf~l~lseeea~~~ 667 (696)
T 2x6h_A 603 H-HHEFRKQ----CYTAYLHLRRHAN----------VMLNLFSLMVDATVPDIALEPDKAVKKVEENLQLGLTDEEAVQH 667 (696)
T ss_dssp H-HHHHHHH----HHHHHHHHHHTHH----------HHHHHHHHTTTCCCTTTTSSGGGHHHHHHHHHTTTSCHHHHHHH
T ss_pred c-HHHHHHH----HHHHHHHHHhCHH----------HHHHHHHHHHcCCCCccccCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 1 1123321 0223333332222 2233444565554322 122234455666778888999988888
Q ss_pred HHHHHHHHHhhh
Q 008120 564 VSKITDYRLDKL 575 (577)
Q Consensus 564 ~~~~~~~~~~~~ 575 (577)
+.++++.-++.+
T Consensus 668 ~~~lI~~S~~s~ 679 (696)
T 2x6h_A 668 LQSLLDVSITAV 679 (696)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 888888776643
No 226
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=91.44 E-value=0.58 Score=41.69 Aligned_cols=72 Identities=14% Similarity=0.242 Sum_probs=60.0
Q ss_pred CCcEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEE--EcCeec--cCCCCccccccccccccccee
Q 008120 27 SESILIYLSV-SGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLV--FGGREL--ARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 27 ~~sM~I~Vtl-~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLi--f~Gk~L--~~D~~tL~dygI~dgstL~Lv 99 (577)
....+|.|++ +|+.+.-+...++||.+|..-|... +.+.....|+ |-.|.| .+.+.+|.+.|+.+..+|.|.
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 5668888865 7888999999999999999999886 7777778888 568889 446899999999988877654
No 227
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=91.13 E-value=1.1 Score=50.28 Aligned_cols=140 Identities=21% Similarity=0.305 Sum_probs=80.8
Q ss_pred hhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCCC--ChhHHHHHHcCChH
Q 008120 407 EVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPY--SPQTVDYIKSLDAE 484 (577)
Q Consensus 407 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~Pf--s~~~~~~i~~Ld~~ 484 (577)
.+--.+|.=|++.=.|||.||||+.. +|+ ++-||=|.||-.. +. |. ..|| +++.++.+-....+
T Consensus 463 S~A~ySvv~YILGigDRH~~NILld~--tG~--v~HIDFG~~f~~~---p~------pe-~vPFRLT~~mv~~mG~~~~e 528 (614)
T 3ls8_A 463 SCAGYCVITYILGVGDRHLDNLLLTK--TGK--LFHIDFGYILGRD---PK------PL-PPPMKLNKEMVEGMGGTQSE 528 (614)
T ss_dssp HHHHHHHHHHHHTCCCCCTTSEEECT--TSC--EEECCCSSCTTCC---SS------SS-CCSSCCCHHHHHHTTCTTSH
T ss_pred HHHHHhHhheeeeccCCCCcceeEcC--CCC--EeeeehHHhhccC---CC------CC-CCCeecCHHHHHHhCCCCCc
Confidence 35556788889999999999999974 677 9999999999643 11 11 3444 55555443332222
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccCCCC-CChHHHHHHHHHhhcCCCCChHHHHHH
Q 008120 485 QDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNK-ESVIEEIVREAQDSLLPGISEAAFLET 563 (577)
Q Consensus 485 ~d~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~~~~~-~s~le~~~~~a~~~~~~~~~~~~f~~~ 563 (577)
. ...++.. -+..+.+||-..-+ .--+.+||....+.. .+.-+..+...++.+.++.+|+.-.+.
T Consensus 529 ~-f~~Fr~~----c~~~~~~LR~~~~~----------il~l~~lM~~s~lp~~~~~~~~~i~~l~~rf~l~lse~ea~~~ 593 (614)
T 3ls8_A 529 Q-YQEFRKQ----CYTAFLHLRRYSNL----------ILNLFSLMVDANIPDIALEPDKTVKKVQDKFRLDLSDEEAVHY 593 (614)
T ss_dssp H-HHHHHHH----HHHHHHHHHHTHHH----------HHHHHHTTTTSCCHHHHTSGGGHHHHHHHHTTTTSCHHHHHHH
T ss_pred h-HHHHHHH----HHHHHHHHHHCHHH----------HHHHHHHHhcCCCCccccChHHHHHHHHHHcCCCCCHHHHHHH
Confidence 1 1223321 12333333332222 223344554332210 011123456667778889999988888
Q ss_pred HHHHHHHHHhhh
Q 008120 564 VSKITDYRLDKL 575 (577)
Q Consensus 564 ~~~~~~~~~~~~ 575 (577)
+-.+++.-++-+
T Consensus 594 ~~~lI~~S~~s~ 605 (614)
T 3ls8_A 594 MQSLIDESVHAL 605 (614)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 888888776654
No 228
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=90.69 E-value=1 Score=44.10 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=55.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCCccc-cEEEEE-c----CeeccCCCCcccccccccccccceeeeeccc
Q 008120 40 LVPMRVLETDSIESVKLRIQTCKGFVVK-KQKLVF-G----GRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 40 ~~~leV~~sdTV~~LK~kI~~~~Gip~~-~QrLif-~----Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
.+++.++..+||.+|++++....+++.+ +-||.. . ...|.+.+.+|.++++.++..|.+-++..|+
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 4567789999999999999999999987 578874 3 3466645799999999999999988887765
No 229
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=90.45 E-value=0.69 Score=40.12 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=59.5
Q ss_pred CCCcEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEE--EcCeecc-CCCCcccccccccccccceee
Q 008120 26 SSESILIYLSV-SGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLV--FGGRELA-RNHSLVKDYGVTGGNVLHLVL 100 (577)
Q Consensus 26 ~~~sM~I~Vtl-~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLi--f~Gk~L~-~D~~tL~dygI~dgstL~Lvl 100 (577)
.....+|.|++ +|+.+.-+...++||.+|..-|... +.......|+ |-.|.|. +.+.+|++.|+.+..+|.|..
T Consensus 20 ~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 20 AEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp CSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 35678888864 7888888999999999999999965 5555677777 5578887 468999999999988886543
No 230
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=90.30 E-value=0.83 Score=44.37 Aligned_cols=66 Identities=23% Similarity=0.272 Sum_probs=54.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCCccc-cEEEEE---c--CeeccCCCCcccccccccccccceeeeeccc
Q 008120 40 LVPMRVLETDSIESVKLRIQTCKGFVVK-KQKLVF---G--GRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 40 ~~~leV~~sdTV~~LK~kI~~~~Gip~~-~QrLif---~--Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
.+++.++..+||.+|++++.+..+++.+ +-||.. . ...|.+++.+|.+++|.++..|.+-++..|+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 4678899999999999999999999987 577762 2 2366645789999999999999888887665
No 231
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=89.58 E-value=0.77 Score=41.20 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=47.8
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHh--hCCcc------ccEEEEE-c---Ce-eccCCC------------Cccccccccc
Q 008120 38 GSLVPMRVLETDSIESVKLRIQTC--KGFVV------KKQKLVF-G---GR-ELARNH------------SLVKDYGVTG 92 (577)
Q Consensus 38 G~~~~leV~~sdTV~~LK~kI~~~--~Gip~------~~QrLif-~---Gk-~L~~D~------------~tL~dygI~d 92 (577)
+..+++.|...|||.++|+||-+. .++|. ++..|-+ . |+ .|.+.+ .||++|+|.+
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~d 95 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPE 95 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCT
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCC
Confidence 456889999999999999999765 45554 4566766 2 33 355211 3788999999
Q ss_pred ccccceeeee
Q 008120 93 GNVLHLVLKL 102 (577)
Q Consensus 93 gstL~LvlrL 102 (577)
|++|.|..+.
T Consensus 96 gatv~l~~~~ 105 (127)
T 3h6n_A 96 GASLAMSLID 105 (127)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEEcc
Confidence 9999887654
No 232
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=89.50 E-value=1.7 Score=51.02 Aligned_cols=142 Identities=23% Similarity=0.228 Sum_probs=80.0
Q ss_pred hhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCC--CChhHHHHHHcC--Ch
Q 008120 408 VHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREP--YSPQTVDYIKSL--DA 483 (577)
Q Consensus 408 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~P--fs~~~~~~i~~L--d~ 483 (577)
+--.+|.=|++.=.|||.+|||+.. +|+ ++.||=|.||-..-. .| -.---..| ++++.++.+..- ..
T Consensus 775 ~A~~Svv~YILGlgDRH~~NILid~--tG~--v~HIDFG~~f~~~~~--~l---~~~pE~VPFRLT~~mv~~mg~g~~~~ 845 (940)
T 2wxf_A 775 CAGYCVATYVLGIGDRHSDNIMIRE--SGQ--LFHIDFGHFLGNFKT--KF---GINRERVPFILTYDFVHVIQQGKTNN 845 (940)
T ss_dssp HHHHHHHHHHHTCCCCCGGGEEEET--TSC--EEECCCCCCTTCC--------------CCCCCCCHHHHHHHTTTCSCC
T ss_pred HHHHHHHHHHhccCCCCcccEEEec--CCC--EEEEeehhhhccccc--cc---CCCCCCCCccCCHHHHHHHcCCCCCC
Confidence 4456777888888999999999985 677 999999999954211 11 00001334 466666555431 11
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCChHHHHHHHHHhhcCCCCChHHHHHH
Q 008120 484 EQDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLET 563 (577)
Q Consensus 484 ~~d~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~ 563 (577)
+.....++.. -+..+++||-.. -.+..+-++|.+..+-.-+. +.-+..-++.+.++.+|+.-.+.
T Consensus 846 s~~~g~Fr~~----c~~~~~~LR~~~----------~~ll~ll~lml~~~lp~~~~-~~~i~~l~~r~~l~~se~ea~~~ 910 (940)
T 2wxf_A 846 SEKFERFRGY----CERAYTILRRHG----------LLFLHLFALMRAAGLPELSC-SKDIQYLKDSLALGKTEEEALKH 910 (940)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHTH----------HHHHHHHHHHGGGCCTTSCS-HHHHHHHHHHHTTTSCHHHHHHH
T ss_pred CcchhhHHHH----HHHHHHHHHhHH----------HHHHHHHHHHhCCCCcccCc-hHHHHHHHHHhCCCCCHHHHHHH
Confidence 2222233321 022233333221 12334455566654432222 22345556677888999988888
Q ss_pred HHHHHHHHHh
Q 008120 564 VSKITDYRLD 573 (577)
Q Consensus 564 ~~~~~~~~~~ 573 (577)
+.++++.-+.
T Consensus 911 ~~~~i~~s~~ 920 (940)
T 2wxf_A 911 FRVKFNEALR 920 (940)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887764
No 233
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=89.37 E-value=0.69 Score=41.22 Aligned_cols=72 Identities=13% Similarity=0.058 Sum_probs=57.9
Q ss_pred ccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEE--ECCeec--CC-CCcccccCCCCCCEEEEE
Q 008120 103 SDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIF--CDGEKL--DD-QRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 103 sd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLi--f~Gr~L--eD-~~tLsdy~I~~~svI~Lv 177 (577)
.+...|.||..+|+.+.-....++||.+|..-|... +.. .....|+ |-.+.| +| ..+|.+.++.+.++|++.
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~--~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCC--TTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCC--CCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 344678888889998888888999999999999887 433 5667777 568888 34 799999999998888864
No 234
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=89.14 E-value=0.69 Score=40.19 Aligned_cols=71 Identities=15% Similarity=0.074 Sum_probs=56.3
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEE--ECCeecC--C-CCcccccCCCCCCEEEEEE
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIF--CDGEKLD--D-QRLIDDICKDNDAVIHLLV 178 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLi--f~Gr~Le--D-~~tLsdy~I~~~svI~Lvv 178 (577)
..|.||..+|+.+.-....++||.+|.+-|....+.. .....|+ |-.+.+. | .++|.|.++.+.++|++..
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~--~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNT--YGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTS--SCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCC--CCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 4677788888888888889999999999998885533 4556666 5677886 3 7899999999998888743
No 235
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=88.49 E-value=1.1 Score=39.76 Aligned_cols=76 Identities=26% Similarity=0.414 Sum_probs=51.6
Q ss_pred CCcEEEEEE-e---CCeEEEEEeCCCCCHHHHHHHHHHh--hCCccc------cEEEEE-cC---e-eccCCC-------
Q 008120 27 SESILIYLS-V---SGSLVPMRVLETDSIESVKLRIQTC--KGFVVK------KQKLVF-GG---R-ELARNH------- 82 (577)
Q Consensus 27 ~~sM~I~Vt-l---~G~~~~leV~~sdTV~~LK~kI~~~--~Gip~~------~QrLif-~G---k-~L~~D~------- 82 (577)
-..|.++|. . ....+++.|...|||.++|+||-.. .|.|.. +..|-+ .| + .|.+.+
T Consensus 11 ~~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~ 90 (117)
T 4e74_A 11 YKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEN 90 (117)
T ss_dssp CCEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC--
T ss_pred cEEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecC
Confidence 345666662 2 2345889999999999999999765 466544 455665 23 3 355211
Q ss_pred -----Ccccccccccccccceeeee
Q 008120 83 -----SLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 83 -----~tL~dygI~dgstL~LvlrL 102 (577)
.||++|+|.+|+++.|+.+.
T Consensus 91 ~wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 91 DWKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp -CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred cceEeccccccCCCCCCEEEEEeCC
Confidence 36889999999999887653
No 236
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=88.39 E-value=1.2 Score=39.06 Aligned_cols=64 Identities=9% Similarity=0.021 Sum_probs=45.8
Q ss_pred CceeEEeeccCCchhhhHHHHHhhC--CCCC----CCCceEEEE----CCeecCCC-------------CcccccCCCCC
Q 008120 115 GKELEFHIDRYRNVGYLKQRIARKG--KGFV----DVVDQEIFC----DGEKLDDQ-------------RLIDDICKDND 171 (577)
Q Consensus 115 Gk~~~i~Vd~~~TV~~LK~kI~~~~--gi~~----p~~~QrLif----~Gr~LeD~-------------~tLsdy~I~~~ 171 (577)
+..+.+.|-..+||.++|+||-... |.|. .+++..|-+ .|+.|.|. +||..|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4568888889999999999996652 3332 256777877 35666552 47889999999
Q ss_pred CEEEEEE
Q 008120 172 AVIHLLV 178 (577)
Q Consensus 172 svI~Lvv 178 (577)
+++-|+-
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9998854
No 237
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.38 E-value=1.3 Score=37.16 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=58.9
Q ss_pred CCCCCCcEEEEEEe-CCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEc---CeeccCCCCccccccccc
Q 008120 23 GRSSSESILIYLSV-SGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFG---GRELARNHSLVKDYGVTG 92 (577)
Q Consensus 23 ~~~~~~sM~I~Vtl-~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~---Gk~L~~D~~tL~dygI~d 92 (577)
+.-+..+.++.|.+ ..+...++|+|..++.+|--.|-++..+.+..-.|.-. +.+|. -+.+|.||||++
T Consensus 4 ~~~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~Ld-LskSLndlgirE 76 (91)
T 2daj_A 4 GSSGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLD-LTKSLNDLGLRE 76 (91)
T ss_dssp CSCCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCC-TTSCHHHHTCSE
T ss_pred CCCCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccc-hhcchhhhhhhh
Confidence 44567899999964 45778899999999999999999999999998888743 66887 899999999986
No 238
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=87.29 E-value=3.2 Score=32.86 Aligned_cols=66 Identities=6% Similarity=0.098 Sum_probs=48.6
Q ss_pred cEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 29 SILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 29 sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
.|+|+|.-......+++....||.+|.+++ +++...-.+..+|..+.+| . -+++|+.|.+.-..+|
T Consensus 4 ~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~-~-----~L~~gD~V~ii~~V~G 69 (70)
T 1ryj_A 4 GMKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDE-E-----EIFDGDIIEVIRVIYG 69 (70)
T ss_dssp CEEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTT-S-----BCCTTCEEEEEECTTC
T ss_pred eEEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCc-c-----cCCCCCEEEEEecccc
Confidence 488888655556677888889999999876 5666666677899988743 2 5778998877655544
No 239
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=87.15 E-value=1.4 Score=36.64 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=43.2
Q ss_pred CCCcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCe
Q 008120 26 SSESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGR 76 (577)
Q Consensus 26 ~~~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk 76 (577)
++..|.|.|... -++.|+|.++.+..+|..+|.++.+++++.-.|.|.-.
T Consensus 2 ~~~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 2 SHMAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp CSSCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CCCcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 345688888665 69999999999999999999999999988888888643
No 240
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=87.09 E-value=0.94 Score=36.68 Aligned_cols=66 Identities=9% Similarity=0.153 Sum_probs=49.1
Q ss_pred EEEEEEeCC-eEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecccc
Q 008120 30 ILIYLSVSG-SLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLL 106 (577)
Q Consensus 30 M~I~Vtl~G-~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~m 106 (577)
|+|+|++.| ....+++.++.||++|-+ ..|++++.-....+|+.+..|. +.+|++|.++--.+|+.
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~-------~l~GD~VeIv~~V~G~~ 67 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ-------SVEVDRVKVLRLIKGGL 67 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS-------SSCCCCEEECSSCSCC-
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH-------CCCCCEEEEEEeecccc
Confidence 788997666 455689999999999775 5789988887778999988444 33588887765555553
No 241
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=86.62 E-value=1.9 Score=47.43 Aligned_cols=134 Identities=10% Similarity=0.080 Sum_probs=85.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcC-e------e-ccC----CCCccccccc-ccccccceeeee-----
Q 008120 41 VPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGG-R------E-LAR----NHSLVKDYGV-TGGNVLHLVLKL----- 102 (577)
Q Consensus 41 ~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~G-k------~-L~~----D~~tL~dygI-~dgstL~LvlrL----- 102 (577)
.+++|..++|+.+||++|++..|+|+++|||-.-- | + +.+ .+.++.++.- .+.-+|.|-+..
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~~~~~~~lflE~~~~~~~~ 117 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETVDPELAA 117 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHTSCSSEEEEEEECCHHHHT
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhccCCceEEEEEecccccCC
Confidence 36789999999999999999999999999986321 1 1 110 1112222211 111223332210
Q ss_pred ----------ccccccccccC--CCceeE----EeeccCCchhhhHHHHHhhCCCCCCCCceEEEEC------CeecC-C
Q 008120 103 ----------SDLLLITVRTS--CGKELE----FHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCD------GEKLD-D 159 (577)
Q Consensus 103 ----------sd~m~I~Vrt~--~Gk~~~----i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~------Gr~Le-D 159 (577)
.+.+-|++|-. ..+++. +.|+.+.+|.++-..|.+..|++ ++.--.+|. -..|+ .
T Consensus 118 ~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p--~dt~l~lyEEi~~~~ie~l~~~ 195 (530)
T 2ylm_A 118 SGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFI--QDTSLILYEEVKPNLTERIQDY 195 (530)
T ss_dssp TTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCC--TTCCEEEEEEEETTEEEECCCS
T ss_pred ccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCC--CCCceEEEEecCCCceeEcccc
Confidence 01244555532 233444 57899999999999999999987 554444553 34577 5
Q ss_pred CCccccc--CCCCCCEEEE
Q 008120 160 QRLIDDI--CKDNDAVIHL 176 (577)
Q Consensus 160 ~~tLsdy--~I~~~svI~L 176 (577)
..++.+. .+.+|++|-.
T Consensus 196 ~~t~~~~~~eL~~GdII~f 214 (530)
T 2ylm_A 196 DVSLDKALDELMDGDIIVF 214 (530)
T ss_dssp SSBHHHHSTTCCTTEEEEE
T ss_pred cccHHHHHhcccCCCEEEE
Confidence 7899999 9999999764
No 242
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=86.30 E-value=2.2 Score=46.82 Aligned_cols=114 Identities=11% Similarity=0.032 Sum_probs=73.8
Q ss_pred CcEEEEEEe---CCeEEEEEeCCCCCHHHHHHHHHHhhCCc---cccEEEE--EcCe---eccCCCCccccccccccccc
Q 008120 28 ESILIYLSV---SGSLVPMRVLETDSIESVKLRIQTCKGFV---VKKQKLV--FGGR---ELARNHSLVKDYGVTGGNVL 96 (577)
Q Consensus 28 ~sM~I~Vtl---~G~~~~leV~~sdTV~~LK~kI~~~~Gip---~~~QrLi--f~Gk---~L~~D~~tL~dygI~dgstL 96 (577)
..|+|+... .-..+.+-|..+.||.+|-+.++.+.+++ ..+.||+ +++| .+. ++.+|...+=....++
T Consensus 338 r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~-~~~~i~~i~d~~~~~~ 416 (530)
T 2ylm_A 338 RSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQ-EDELLECLSPATSRTF 416 (530)
T ss_dssp CCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEEC-TTSBGGGSCCCTTCEE
T ss_pred ceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecC-CCcccccccccccceE
Confidence 456665531 11367788889999999999999999987 4556665 6775 555 5666654321112233
Q ss_pred ceeeeecc--------ccccccc-------cCCCceeEEeeccCCchhhhHHHHHhhCCCC
Q 008120 97 HLVLKLSD--------LLLITVR-------TSCGKELEFHIDRYRNVGYLKQRIARKGKGF 142 (577)
Q Consensus 97 ~LvlrLsd--------~m~I~Vr-------t~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~ 142 (577)
.+-.-..+ .+.|.|- ...|..|.+.|.+++|..++|+||+++.|++
T Consensus 417 rieeip~ee~~~~~~~~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~ 477 (530)
T 2ylm_A 417 RIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQ 477 (530)
T ss_dssp EEEECCGGGSSCCTTTEEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCC
T ss_pred EEEECCHHHhccCCCCcEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCC
Confidence 22211111 1112221 1258889999999999999999999999975
No 243
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=85.85 E-value=0.95 Score=40.42 Aligned_cols=70 Identities=16% Similarity=0.282 Sum_probs=55.8
Q ss_pred CCcEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHhh-CCccccEEEE--EcCeeccCCCCccccccccccccc
Q 008120 27 SESILIYLS-VSGSLVPMRVLETDSIESVKLRIQTCK-GFVVKKQKLV--FGGRELARNHSLVKDYGVTGGNVL 96 (577)
Q Consensus 27 ~~sM~I~Vt-l~G~~~~leV~~sdTV~~LK~kI~~~~-Gip~~~QrLi--f~Gk~L~~D~~tL~dygI~dgstL 96 (577)
....+|.|+ .+|+.+.-+...++||.+|..-|.... +.......|+ |-.+.|.+++.+|.+.|+.+..+|
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 345788885 478889999999999999999999863 4555667777 458899867899999999875543
No 244
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=85.70 E-value=3.4 Score=49.11 Aligned_cols=142 Identities=18% Similarity=0.239 Sum_probs=79.3
Q ss_pred hhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCCC--ChhHHHHHHc--CCh
Q 008120 408 VHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPY--SPQTVDYIKS--LDA 483 (577)
Q Consensus 408 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~Pf--s~~~~~~i~~--Ld~ 483 (577)
+--.+|.=|++.=.|||.+|||+.+ +|+ ++.||=|+||-..-+ +| ..---..|| +++.++.+.. .+.
T Consensus 924 ~A~ysvv~YiLgigDRH~~NILid~--tG~--v~HIDFG~~f~~~~~--~~---~~~~E~vPFrLT~~mv~vmg~G~~~~ 994 (1091)
T 3hhm_A 924 CAGYCVATFILGIGDRHNSNIMVKD--DGQ--LFHIDFGHFLDHKKK--KF---GYKRERVPFVLTQDFLIVISKGAQEC 994 (1091)
T ss_dssp HHHHHHHHHHHTCCCCCTTTEEEET--TSC--EEECCCCCCSCC-----------------CCCCCHHHHHHSSCSSSCC
T ss_pred hhhhhheEEEEeecCCCCcceEEeC--CCC--EEEEeehhhhccCCc--cC---CCCcCCCCceeHHHHHHHHhcCCCCc
Confidence 4456788889999999999999986 677 999999999964210 11 000023343 5555544321 110
Q ss_pred --HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCChHHHHHHHHHhhcCCCCChHHHH
Q 008120 484 --EQDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFL 561 (577)
Q Consensus 484 --~~d~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~ 561 (577)
.+.-..++. -|..+|++ |+ +..-...-+.++|.-..+-.-+ .+.-++.-++.+.++.||+.-.
T Consensus 995 e~s~~fg~Fr~-------~c~~a~~~----LR---~~~~~il~LlelM~~s~lp~~~-~~~~i~~lr~rf~l~lseeeA~ 1059 (1091)
T 3hhm_A 995 TKTREFERFQE-------MCYKAYLA----IR---QHANLFINLFSMMLGSGMPELQ-SFDDIAYIRKTLALDKTEQEAL 1059 (1091)
T ss_dssp SSSHHHHHHHH-------HHHHHHHH----HH---HTTTHHHHHHHHGGGSCCTTCS-SHHHHHHHHHHSCCSSCHHHHH
T ss_pred ccchhHHHHHH-------HHHHHHHH----HH---hhhHHHHHHHHHHhcCCCCccC-chHHHHHHHHHhCCCCCHHHHH
Confidence 112223332 13222221 11 2233344455556554333222 1344566778899999999888
Q ss_pred HHHHHHHHHHHh
Q 008120 562 ETVSKITDYRLD 573 (577)
Q Consensus 562 ~~~~~~~~~~~~ 573 (577)
+.+..+|+.-+.
T Consensus 1060 ~~f~~~i~~s~~ 1071 (1091)
T 3hhm_A 1060 EYFMKQMNDARH 1071 (1091)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHHh
Confidence 888888877664
No 245
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=85.08 E-value=1.8 Score=45.00 Aligned_cols=63 Identities=13% Similarity=0.008 Sum_probs=53.1
Q ss_pred CceeEEeeccCCchhhhHHHHHhhCCC--CCCCCceEEEE------CCeecCCCCcccccCCCCCCEEEEE
Q 008120 115 GKELEFHIDRYRNVGYLKQRIARKGKG--FVDVVDQEIFC------DGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 115 Gk~~~i~Vd~~~TV~~LK~kI~~~~gi--~~p~~~QrLif------~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
+.+-++..+++.||.++-.+|.++... ..+.++.-|+. .|+.|++.++|+.|++++++.|+..
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 556679999999999999999988752 23578888888 5678999999999999999999864
No 246
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=84.20 E-value=1.8 Score=39.34 Aligned_cols=67 Identities=10% Similarity=0.114 Sum_probs=48.6
Q ss_pred CceeEEeeccCCchhhhHHHHHhhC--CCCC----CCCceEEEE----CCe-ecCCC-------------CcccccCCCC
Q 008120 115 GKELEFHIDRYRNVGYLKQRIARKG--KGFV----DVVDQEIFC----DGE-KLDDQ-------------RLIDDICKDN 170 (577)
Q Consensus 115 Gk~~~i~Vd~~~TV~~LK~kI~~~~--gi~~----p~~~QrLif----~Gr-~LeD~-------------~tLsdy~I~~ 170 (577)
...+.+.|=..+||.++|+||-... |.|. .+++.-|-+ .|+ .|.|. +||..|+|.+
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 3568889999999999999997653 3432 345666766 344 46663 3899999999
Q ss_pred CCEEEEEEecC
Q 008120 171 DAVIHLLVQKS 181 (577)
Q Consensus 171 ~svI~Lvvrks 181 (577)
|+++.|+-+.+
T Consensus 120 ga~l~l~~~~~ 130 (138)
T 2r2o_A 120 GATVALVPCLT 130 (138)
T ss_dssp TCEEEEEEC--
T ss_pred CCEEEEEECCC
Confidence 99999976644
No 247
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=83.05 E-value=2.3 Score=36.78 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=54.4
Q ss_pred ccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEE--ECCeecC--CCCcccccCCCCCCEEEEE
Q 008120 105 LLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIF--CDGEKLD--DQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 105 ~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLi--f~Gr~Le--D~~tLsdy~I~~~svI~Lv 177 (577)
..+|.||..+|+.+.-....++||.+|..-|..... . ....+|+ |-.+.|. ...+|.+.++.+.++|++-
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~~~-~--~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGY-H--KSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHTC-C--TTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcCC-C--CCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 356777778888887788889999999999987633 2 4566776 5578886 3799999999999998763
No 248
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=82.97 E-value=5.1 Score=47.77 Aligned_cols=142 Identities=22% Similarity=0.260 Sum_probs=78.8
Q ss_pred hhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCC--CChhHHHHHHcC--Ch
Q 008120 408 VHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREP--YSPQTVDYIKSL--DA 483 (577)
Q Consensus 408 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~P--fs~~~~~~i~~L--d~ 483 (577)
+--.+|.=|++.=.|||.+|||+.. +|+ ++.||=|.||-..-. .|. .---..| ++++.++.+..- ..
T Consensus 927 lA~ySvv~YILGlGDRH~~NILid~--tG~--v~HIDFG~~f~~~~~--~l~---~~pE~VPFRLT~~mv~~mg~g~~~~ 997 (1092)
T 2y3a_A 927 CAGYCVASYVLGIGDRHSDNIMVKK--TGQ--LFHIDFGHILGNFKS--KFG---IKRERVPFILTYDFIHVIQQGKTGN 997 (1092)
T ss_dssp HHHHHHHHHHTTCCCCCTTTEEECT--TSC--EEECCCSCCSSCCCC--GGG---CCCCCCCCCCCHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHhcCCCCCCccEEEec--CCC--EEEEeehhhhhcCCc--cCC---CCCCCCCccCCHHHHHHHccCCCCC
Confidence 3345666777777899999999985 676 999999999953211 110 0002344 466666555421 11
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCChHHHHHHHHHhhcCCCCChHHHHHH
Q 008120 484 EQDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLET 563 (577)
Q Consensus 484 ~~d~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~ 563 (577)
+.....++ .-|..+|++.. + ..-.+..+.++|.+..+-.-+. +.-+..-++.+.++.+|+.-.+.
T Consensus 998 s~~fg~Fr-------~~c~~a~~~LR----~---~~~~Il~ll~lml~~~Lp~~~~-~~~i~~lr~rf~l~~seeeA~~~ 1062 (1092)
T 2y3a_A 998 TEKFGRFR-------QCCEDAYLILR----R---HGNLFITLFALMLTAGLPELTS-VKDIQYLKDSLALGKSEEEALKQ 1062 (1092)
T ss_dssp SSSTTHHH-------HHHHHHHHHHH----H---THHHHHHHHHHTSTTCCSSCSS-HHHHHHHHHHTTCSSCHHHHHHH
T ss_pred CcchhhHH-------HHHHHHHHHHH----h---CHHHHHHHHHHHhCCCCccccc-hhHHHHHHHhhCCCCCHHHHHHH
Confidence 10001111 22333333211 1 1122344555666654433222 23345556778889999988888
Q ss_pred HHHHHHHHHh
Q 008120 564 VSKITDYRLD 573 (577)
Q Consensus 564 ~~~~~~~~~~ 573 (577)
+.++++.-+.
T Consensus 1063 ~~~~I~~s~~ 1072 (1092)
T 2y3a_A 1063 FKQKFDEALR 1072 (1092)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888777664
No 249
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=82.71 E-value=1.8 Score=36.18 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=53.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeee
Q 008120 40 LVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 40 ~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrL 102 (577)
.+.-.++-.+++..||..++.+.|++-+.-.++.++..|. ++++|.|.+|+-...+++.+.+
T Consensus 4 vi~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~-~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 4 CVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLD-PDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECC-TTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccC-CCccHHHhhcccccEEEEEEEE
Confidence 3445677788999999999999999999999999999998 9999999999988888765543
No 250
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=82.58 E-value=1.8 Score=38.51 Aligned_cols=68 Identities=12% Similarity=0.148 Sum_probs=53.4
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCC-CCCCCCceEEE--ECCeecCC-CCcccccCCCCCCEEE
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGK-GFVDVVDQEIF--CDGEKLDD-QRLIDDICKDNDAVIH 175 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~g-i~~p~~~QrLi--f~Gr~LeD-~~tLsdy~I~~~svI~ 175 (577)
..|.||..+|..+.-....++||.+|.+-|..... .. .....|+ |-.+.|+| ..+|.|.++.+.++|+
T Consensus 53 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~--~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 53 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMA--ATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp CCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGG--TSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCC--CCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 57788888898888888899999999999988642 22 4556676 56888976 6999999998855544
No 251
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=81.69 E-value=4.1 Score=36.49 Aligned_cols=67 Identities=10% Similarity=0.001 Sum_probs=48.7
Q ss_pred CCceeEEeeccCCchhhhHHHHHhhC--CCCC----CCCceEEEE----CCe-ecCC-------------CCcccccCCC
Q 008120 114 CGKELEFHIDRYRNVGYLKQRIARKG--KGFV----DVVDQEIFC----DGE-KLDD-------------QRLIDDICKD 169 (577)
Q Consensus 114 ~Gk~~~i~Vd~~~TV~~LK~kI~~~~--gi~~----p~~~QrLif----~Gr-~LeD-------------~~tLsdy~I~ 169 (577)
.+..+.+.|=..+||.++|+||-... +.|. .+++..|-+ .|+ .|.| =+||..|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 45568888889999999999996652 3332 257778887 233 3654 1478899999
Q ss_pred CCCEEEEEEec
Q 008120 170 NDAVIHLLVQK 180 (577)
Q Consensus 170 ~~svI~Lvvrk 180 (577)
+|+++-|+.+.
T Consensus 95 dgatv~l~~~~ 105 (127)
T 3h6n_A 95 EGASLAMSLID 105 (127)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEcc
Confidence 99999997653
No 252
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=81.41 E-value=6.2 Score=46.41 Aligned_cols=142 Identities=22% Similarity=0.206 Sum_probs=73.7
Q ss_pred hhhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccc-cCCCCCC--CChhHHHHHHcCChH
Q 008120 408 VHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLY-WPQAREP--YSPQTVDYIKSLDAE 484 (577)
Q Consensus 408 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~-wpqa~~P--fs~~~~~~i~~Ld~~ 484 (577)
+--.+|.=|++.=.|||.+|||+.. +|+ ++.||=|.||-.. .++ +- -| -..| ++++.++.+-....+
T Consensus 791 ~A~ySvv~YILGigDRH~~NILid~--tG~--v~HIDFG~~f~~~---~~~--l~~~p-E~vPFRLT~~mv~~mG~~g~e 860 (961)
T 1e7u_A 791 CAGYCVATFVLGIGDRHNDNIMISE--TGN--LFHIDFGHILGNY---KSF--LGINK-ERVPFVLTPDFLFVMGTSGKK 860 (961)
T ss_dssp HHHHHHHHHHTTCCCCCGGGEEEET--TCC--EEECCCCCC---------------CC-CCCSSCCCHHHHHHTTCCSSC
T ss_pred HHHHHHHHHHccccCCCCcceEEec--CCC--EEEEeehhhhccC---ccc--cCCCC-CCCCcccCHHHHHHhcccCCc
Confidence 4456677788888999999999985 677 9999999999642 111 00 01 2344 466666555433221
Q ss_pred --HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCChHHHHHHHHHhhcCCCCChHHHHH
Q 008120 485 --QDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLE 562 (577)
Q Consensus 485 --~d~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~ 562 (577)
.....++.. -+..+++||-..- .+..+..||....+..-+. +.-+...++.+.++.+|+.-.+
T Consensus 861 ~s~~fg~F~~~----c~~~~~~LR~~~~----------~l~~ll~lm~~~~lp~~~~-~~~i~~lr~rf~l~~se~eA~~ 925 (961)
T 1e7u_A 861 TSLHFQKFQDV----CVKAYLALRHHTN----------LLIILFSMMLMTGMPQLTS-KEDIEYIRDALTVGKSEEDAKK 925 (961)
T ss_dssp CCHHHHHHHHH----HHHHHHHHHTTHH----------HHHHHHHHHHHHSCSSCCC-HHHHHHHHHHTTTTSCHHHHHH
T ss_pred cchhHHHHHHH----HHHHHHHHHHhHH----------HHHHHHHHHhcCCCCccCc-hHHHHHHHHHhCCCCCHHHHHH
Confidence 111223221 0222222222211 1222333444433221111 2234455667888889887777
Q ss_pred HHHHHHHHHHhh
Q 008120 563 TVSKITDYRLDK 574 (577)
Q Consensus 563 ~~~~~~~~~~~~ 574 (577)
.+-++++.-++.
T Consensus 926 ~~~~lI~~s~~~ 937 (961)
T 1e7u_A 926 YFLDQIEVCRDK 937 (961)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 777777766653
No 253
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=79.48 E-value=6 Score=33.01 Aligned_cols=60 Identities=25% Similarity=0.263 Sum_probs=52.8
Q ss_pred eEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 118 LEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 118 ~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
+.-+++=..+...||+.++.+.++. .+......++..|+.+++|.|.|++-...+.+.+.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~--L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvq 64 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCS--LDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQ 64 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSC--CSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCC--cccCeEEeeccccCCCccHHHhhcccccEEEEEEE
Confidence 3445677789999999999999976 88899999999999999999999999999998765
No 254
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=77.98 E-value=7.1 Score=32.69 Aligned_cols=73 Identities=15% Similarity=0.220 Sum_probs=47.1
Q ss_pred CCCcEEEEEEe-------CC-eEEEEEeCCCCCHHHHHHHHHHhhC-Cc----------cccEEEEEcCeeccCCCCccc
Q 008120 26 SSESILIYLSV-------SG-SLVPMRVLETDSIESVKLRIQTCKG-FV----------VKKQKLVFGGRELARNHSLVK 86 (577)
Q Consensus 26 ~~~sM~I~Vtl-------~G-~~~~leV~~sdTV~~LK~kI~~~~G-ip----------~~~QrLif~Gk~L~~D~~tL~ 86 (577)
.-.+|+|+|.+ .| ....+++....||.+|.+.+..... +. ...-.+..+|+... .
T Consensus 6 ~~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~-~----- 79 (98)
T 1vjk_A 6 HHGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS-W----- 79 (98)
T ss_dssp ---CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC-T-----
T ss_pred ccCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC-C-----
Confidence 35789999941 23 4678888888999999999987631 10 12234666777665 2
Q ss_pred ccccccccccceeeeecc
Q 008120 87 DYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 87 dygI~dgstL~LvlrLsd 104 (577)
++-+++|+.|.+....+|
T Consensus 80 ~~~L~dGDeV~i~ppv~G 97 (98)
T 1vjk_A 80 DEELKDGDVVGVFPPVSG 97 (98)
T ss_dssp TCBCCTTCEEEEESCC--
T ss_pred CCCCCCCCEEEEECCCCC
Confidence 566788999887665554
No 255
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=77.97 E-value=7.6 Score=32.40 Aligned_cols=44 Identities=9% Similarity=0.066 Sum_probs=37.9
Q ss_pred CcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEE
Q 008120 28 ESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVF 73 (577)
Q Consensus 28 ~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif 73 (577)
..|+|.+.+++..+.|.|.++-+..+|+.||..+..+. .+.|++
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ 54 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQT 54 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEE
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEE
Confidence 67999998888999999999999999999999998883 444443
No 256
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=75.30 E-value=5.5 Score=35.23 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=47.0
Q ss_pred CceeEEeeccCCchhhhHHHHHhhC--CCCC----CCCceEEEE-CC---e-ecCC-------------CCcccccCCCC
Q 008120 115 GKELEFHIDRYRNVGYLKQRIARKG--KGFV----DVVDQEIFC-DG---E-KLDD-------------QRLIDDICKDN 170 (577)
Q Consensus 115 Gk~~~i~Vd~~~TV~~LK~kI~~~~--gi~~----p~~~QrLif-~G---r-~LeD-------------~~tLsdy~I~~ 170 (577)
...+.+.|-..+||.++|+||-... +.|. .+++..|-+ .| + .|.| =+||.+|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 4557788889999999999996652 3332 246777776 23 3 3444 14788899999
Q ss_pred CCEEEEEEec
Q 008120 171 DAVIHLLVQK 180 (577)
Q Consensus 171 ~svI~Lvvrk 180 (577)
|+++-|+.|+
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999997664
No 257
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=74.44 E-value=13 Score=31.22 Aligned_cols=50 Identities=8% Similarity=0.048 Sum_probs=42.0
Q ss_pred CCCcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCcccc-EEEEEcC
Q 008120 26 SSESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKK-QKLVFGG 75 (577)
Q Consensus 26 ~~~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~-QrLif~G 75 (577)
+...|+|.+.++|..+.+.++++.+..+|.++|....++...+ ..|.|-.
T Consensus 3 ~~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 3 LGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp CSSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred CCCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 3566999999999999999999999999999999999987555 4565653
No 258
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=74.24 E-value=7 Score=38.15 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=50.4
Q ss_pred eeEEeeccCCchhhhHHHHHhhCCCCCCCC-ceEEEE-C----CeecCC-CCcccccCCCCCCEEEEEEe
Q 008120 117 ELEFHIDRYRNVGYLKQRIARKGKGFVDVV-DQEIFC-D----GEKLDD-QRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 117 ~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~-~QrLif-~----Gr~LeD-~~tLsdy~I~~~svI~Lvvr 179 (577)
.+++.+++.+||.+|++++.+.++++ .+ +.||-. . -..|.| ..+|.++++.++..|.+=+|
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~--~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r 220 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIP--AERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQ 220 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCC--TTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEEC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCC--CCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEe
Confidence 45677899999999999999999987 54 688774 2 356776 58999999999999998666
No 259
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=73.78 E-value=7.2 Score=43.39 Aligned_cols=76 Identities=26% Similarity=0.383 Sum_probs=50.9
Q ss_pred CCcEEEEEE-eC---CeEEEEEeCCCCCHHHHHHHHHHh--hCCcc------ccEEEEE-c---Ce-eccCCC-------
Q 008120 27 SESILIYLS-VS---GSLVPMRVLETDSIESVKLRIQTC--KGFVV------KKQKLVF-G---GR-ELARNH------- 82 (577)
Q Consensus 27 ~~sM~I~Vt-l~---G~~~~leV~~sdTV~~LK~kI~~~--~Gip~------~~QrLif-~---Gk-~L~~D~------- 82 (577)
-..|.++|. .. ...+++.|...|||.++|+||-.. .|+|. ++..|-+ . |+ .|.|.+
T Consensus 231 ~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~ 310 (627)
T 3ig3_A 231 YKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIEC 310 (627)
T ss_dssp CCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEET
T ss_pred ceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccC
Confidence 455677773 22 367889999999999999999866 45554 4445554 2 33 344211
Q ss_pred -----Ccccccccccccccceeeee
Q 008120 83 -----SLVKDYGVTGGNVLHLVLKL 102 (577)
Q Consensus 83 -----~tL~dygI~dgstL~LvlrL 102 (577)
.||++|+|.+|++|.|+.+.
T Consensus 311 ~wkrLNTL~HY~V~Dga~v~L~p~~ 335 (627)
T 3ig3_A 311 DWKRVNSLAHYQVTDGSLVALVPKQ 335 (627)
T ss_dssp TEEECCBTTTTTCCTTCEEEEEEC-
T ss_pred ceeEecchhhcCCCCCceEEEEecc
Confidence 36889999999999877654
No 260
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=73.68 E-value=5.6 Score=44.32 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=51.2
Q ss_pred CCcEEEEEE-eC------CeEEEEEeCCCCCHHHHHHHHHHh--hCCccc------cEEEEE-c---Ce-eccCCC----
Q 008120 27 SESILIYLS-VS------GSLVPMRVLETDSIESVKLRIQTC--KGFVVK------KQKLVF-G---GR-ELARNH---- 82 (577)
Q Consensus 27 ~~sM~I~Vt-l~------G~~~~leV~~sdTV~~LK~kI~~~--~Gip~~------~QrLif-~---Gk-~L~~D~---- 82 (577)
-..+.++|. .. ...+++.|...|||.++|+||-.. .|+|.+ +..|-+ . |+ .|.|.+
T Consensus 255 ~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~ 334 (644)
T 3hm6_X 255 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 334 (644)
T ss_dssp CCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred ceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccce
Confidence 455677762 22 245889999999999999999755 566654 344554 1 33 355211
Q ss_pred --------Ccccccccccccccceeeeec
Q 008120 83 --------SLVKDYGVTGGNVLHLVLKLS 103 (577)
Q Consensus 83 --------~tL~dygI~dgstL~LvlrLs 103 (577)
.||++|+|.+|++|.|+.+..
T Consensus 335 ~~~~wkrLNTL~HY~V~dga~v~L~p~~~ 363 (644)
T 3hm6_X 335 VQGLWRRLNTLQHYKVPDGATVALVPCLT 363 (644)
T ss_dssp EETTEEECCBTTTTTCCTTCEEEEEEC--
T ss_pred ecCcceeecchhhcCCCCCcEEEEEeccc
Confidence 378999999999998766543
No 261
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=71.21 E-value=5.6 Score=35.56 Aligned_cols=61 Identities=20% Similarity=0.334 Sum_probs=41.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh----hCCccc----cEEEEE-c---CeeccC---------C----CCcccccccccc
Q 008120 39 SLVPMRVLETDSIESVKLRIQTC----KGFVVK----KQKLVF-G---GRELAR---------N----HSLVKDYGVTGG 93 (577)
Q Consensus 39 ~~~~leV~~sdTV~~LK~kI~~~----~Gip~~----~QrLif-~---Gk~L~~---------D----~~tL~dygI~dg 93 (577)
..+++.|...|||.++|+||-.. .|.|.. +..|-+ . |+.|.+ + =.||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46899999999999999999754 376543 344443 1 223332 1 125678999999
Q ss_pred ccccee
Q 008120 94 NVLHLV 99 (577)
Q Consensus 94 stL~Lv 99 (577)
++|-|+
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 988664
No 262
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=67.97 E-value=9.9 Score=36.64 Aligned_cols=61 Identities=10% Similarity=0.064 Sum_probs=49.8
Q ss_pred eeEEeeccCCchhhhHHHHHhhCCCCCCCC-ceEEEE---C--CeecCC-CCcccccCCCCCCEEEEEEe
Q 008120 117 ELEFHIDRYRNVGYLKQRIARKGKGFVDVV-DQEIFC---D--GEKLDD-QRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 117 ~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~-~QrLif---~--Gr~LeD-~~tLsdy~I~~~svI~Lvvr 179 (577)
.+++.+++.+||.+|++++.+.++++ .+ +.||-. + ...|+| +.+|.++++.++..|.+=+|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~--~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r 208 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIP--DEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQK 208 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCC--TTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEEC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCC--CCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEe
Confidence 46688899999999999999999987 54 677763 2 246766 57999999999999998666
No 263
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=65.83 E-value=9.9 Score=30.08 Aligned_cols=70 Identities=10% Similarity=0.209 Sum_probs=43.4
Q ss_pred EEEEEEeCC--eEEEEEeCCCCCHHHHHHHHHHhhCCcc--ccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 30 ILIYLSVSG--SLVPMRVLETDSIESVKLRIQTCKGFVV--KKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 30 M~I~Vtl~G--~~~~leV~~sdTV~~LK~kI~~~~Gip~--~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
|+|+|.+-+ +.-++++ ...||++|.+.+....++.. ..-.+.-+|+... + .++-+++|+.|.+....+||
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~-~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLID-N----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEEC-C----TTCCCCTTCEEEEECCBCCC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcC-C----CCcCCCCCCEEEEECCCCCC
Confidence 566663211 1134666 67899999999986544321 2334556777644 2 24567789999887766654
No 264
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=64.65 E-value=13 Score=28.60 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=43.5
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 34 LSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 34 Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
|+.+|+.+.+ ...||.+|.+.+ +++...-.+..+|+.+.+ ..-.++-+++|+.|.++-...|
T Consensus 2 i~vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~--~~~~~~~L~dgD~v~i~~~V~G 63 (64)
T 2cu3_A 2 VWLNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLG--LEVPDRPLRDGDVVEVVALMQG 63 (64)
T ss_dssp EEETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEG--GGCCCCCCCTTCEEEEEECCCC
T ss_pred EEECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCc--cccCCcCCCCCCEEEEEeeccc
Confidence 4567776654 668999999876 455666667788988762 3334567889999987765554
No 265
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=64.59 E-value=5.6 Score=35.59 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=30.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEc
Q 008120 41 VPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFG 74 (577)
Q Consensus 41 ~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~ 74 (577)
.++.|..++|+.+||..|++..|+|++.|||-.-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 4678999999999999999999999999999643
No 266
>3tpd_A Serine/threonine-protein kinase HIPA; persistence, multidrug tolerance, HIPB, transferase; 1.50A {Escherichia coli} PDB: 3tpe_A* 3tpv_B* 3tpt_A* 3hzi_A* 2wiu_A 3tpb_A 3dnu_A 3dnt_A 3dnv_A* 3fbr_A*
Probab=64.30 E-value=1.5 Score=46.88 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=31.9
Q ss_pred hhhhhheeeeeeeccCCCCCCceEEeeCCCCceEEeee
Q 008120 406 EEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPI 443 (577)
Q Consensus 406 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~I 443 (577)
.++-+..||.+++.|+|.|+.|+=+-...+|.++|.|.
T Consensus 293 ~~~~rr~vfn~ligN~D~H~KN~s~l~~~~g~~~LaPa 330 (440)
T 3tpd_A 293 YDFMKFQVFQWLIGATDGHAKNFSVFIQAGGSYRLTPF 330 (440)
T ss_dssp HHHHHHHHHHHHTTCCCCCGGGCEEEECGGGCEEECCC
T ss_pred HHHHHHHHhhHhhcCCcCCccceEEEEcCCCceEECch
Confidence 45667889999999999999999876645678899986
No 267
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=62.49 E-value=12 Score=31.16 Aligned_cols=69 Identities=9% Similarity=0.077 Sum_probs=43.5
Q ss_pred CCCcEEEEEEeCCeEEEEEeCCC-CCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 26 SSESILIYLSVSGSLVPMRVLET-DSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 26 ~~~sM~I~Vtl~G~~~~leV~~s-dTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
....|+|+ ++|+.+ ++... .||.+|.+.+ +++...-.+..+|+.+. .....++-+++|+.|.++-...|
T Consensus 17 ~~~~M~I~--vNGe~~--el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~--~~~~~~~~L~dGD~Vei~~~V~G 86 (87)
T 1tyg_B 17 IGGRHMLQ--LNGKDV--KWKKDTGTIQDLLASY----QLENKIVIVERNKEIIG--KERYHEVELCDRDVIEIVHFVGG 86 (87)
T ss_dssp -----CEE--ETTEEE--CCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEEC--GGGTTTSBCCSSSEEEEEEECCC
T ss_pred CCcceEEE--ECCEEE--ECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECC--hhhcCCcCCCCCCEEEEEccccc
Confidence 45667555 456644 45666 8999998876 46555556778898886 23444567889999987765544
No 268
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=62.41 E-value=19 Score=36.07 Aligned_cols=75 Identities=11% Similarity=-0.012 Sum_probs=56.1
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEE--CCe--ecCCCCcccccCCCCCCEEEEEEe
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFC--DGE--KLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif--~Gr--~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
..+.+.|...+| ++.+.++++.|+.+|=+.|....|+. ..+---|.| +|. .|+..+.|.+..+..+....|.+|
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~-e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLR-ETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCC-CGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCC-CCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 345677888888 78899999999999999999999976 355556766 443 377778888876655566655555
Q ss_pred c
Q 008120 180 K 180 (577)
Q Consensus 180 k 180 (577)
+
T Consensus 99 ~ 99 (314)
T 1h4r_A 99 A 99 (314)
T ss_dssp E
T ss_pred E
Confidence 3
No 269
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=61.62 E-value=16 Score=36.15 Aligned_cols=72 Identities=15% Similarity=0.063 Sum_probs=52.3
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEE---CCe--ecCCCCcccccCCCCCCEEEEEEe
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFC---DGE--KLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif---~Gr--~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
+.+.|...+| ++.+.++++.|+.+|=++|....|+. ..+---|.| +|. .|+..+.+.+.++..+....|.+|
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~-e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLR-EVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCC-CGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCC-CcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 4566777888 67899999999999999999999976 345556776 332 466677777765555555555554
No 270
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.19 E-value=27 Score=29.24 Aligned_cols=60 Identities=12% Similarity=0.058 Sum_probs=48.4
Q ss_pred ccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEE---CCeecCCCCcccccCCCC
Q 008120 109 TVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFC---DGEKLDDQRLIDDICKDN 170 (577)
Q Consensus 109 ~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif---~Gr~LeD~~tLsdy~I~~ 170 (577)
.|+-...+++.+.|+|..+..++--.|.++.+.. ++.-.|.- .+++|+-..+|.||||++
T Consensus 14 vVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefd--p~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 14 VINFKKTQKTIVRVSPHASLQELAPIICSKCEFD--PLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCC--TTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEeecCcceeEEEeCCCCcHHHHHHHHhhcccCC--hhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 3333445777899999999999999999998854 67666664 567899999999999986
No 271
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=60.04 E-value=29 Score=30.92 Aligned_cols=62 Identities=13% Similarity=0.184 Sum_probs=42.4
Q ss_pred ceeEEeeccCCchhhhHHHHHhh----CCCCC--CCCceEEEEC----CeecCC----------C----CcccccCCCCC
Q 008120 116 KELEFHIDRYRNVGYLKQRIARK----GKGFV--DVVDQEIFCD----GEKLDD----------Q----RLIDDICKDND 171 (577)
Q Consensus 116 k~~~i~Vd~~~TV~~LK~kI~~~----~gi~~--p~~~QrLif~----Gr~LeD----------~----~tLsdy~I~~~ 171 (577)
..+.+.|-..+||.++|+||-.. .+.|. .+++..|-++ |+.|.| . +||..|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46778888999999999998553 25442 2456666651 223322 1 46778999999
Q ss_pred CEEEEE
Q 008120 172 AVIHLL 177 (577)
Q Consensus 172 svI~Lv 177 (577)
+++-|+
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999875
No 272
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=58.88 E-value=14 Score=37.91 Aligned_cols=52 Identities=10% Similarity=0.174 Sum_probs=41.5
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCe-eccCCCCccccc
Q 008120 37 SGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGR-ELARNHSLVKDY 88 (577)
Q Consensus 37 ~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk-~L~~D~~tL~dy 88 (577)
.-....+.+.+.+|+.++++++++.++++++.|.|+|.+. ...+.......|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~ 372 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHF 372 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSS
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccC
Confidence 4578889999999999999999999999999999999983 333233444443
No 273
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=55.79 E-value=10 Score=31.44 Aligned_cols=46 Identities=4% Similarity=-0.034 Sum_probs=37.7
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCe
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGE 155 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr 155 (577)
+.|.|+. .-++.+.|.+..+..+|.++|+++.+++ ++...|.|..+
T Consensus 6 ~~VKV~~--~~tvairvp~~~~y~~L~~~l~~kL~l~--~~~~~LsYk~~ 51 (83)
T 1oey_A 6 YTLKVHY--KYTVVMKTQPGLPYSQVRDMVSKKLELR--LEHTKLSYRPR 51 (83)
T ss_dssp EEEEEES--SSEEEEEECTTCCHHHHHHHHHHHTTCC--GGGCCEEECCT
T ss_pred EEEEEEE--EEEEEEECCCCCCHHHHHHHHHHHhCCC--cceeEEEeeCC
Confidence 3444443 3688899999999999999999999986 78889999764
No 274
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=54.15 E-value=31 Score=27.92 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=43.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC-Cc----c------ccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 39 SLVPMRVLETDSIESVKLRIQTCKG-FV----V------KKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 39 ~~~~leV~~sdTV~~LK~kI~~~~G-ip----~------~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
....+++....||.+|.+.+..... +. . ..-.+.-+|+... . ++-+++|+.|.+...++||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~-~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAA-L-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECC-T-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECC-C-----CcccCCCCEEEEECCCCCC
Confidence 6778888888999999999987652 10 0 1135666787765 3 4567789999887766653
No 275
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=48.81 E-value=26 Score=30.47 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=49.5
Q ss_pred CCcEEEEEEeC--CeEEEEEeCCCCCHHHHHHHHHHhhCCccc--cEEEEEc--C-eeccCCCCccccccccccccccee
Q 008120 27 SESILIYLSVS--GSLVPMRVLETDSIESVKLRIQTCKGFVVK--KQKLVFG--G-RELARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 27 ~~sM~I~Vtl~--G~~~~leV~~sdTV~~LK~kI~~~~Gip~~--~QrLif~--G-k~L~~D~~tL~dygI~dgstL~Lv 99 (577)
..+..+.|..+ +...+++|..+.-|+-+..||-+...++.+ +--|-.- . ..|. ...+|..|||+.++.++..
T Consensus 22 d~SWeL~V~V~d~~~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlk-t~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 22 DGTWELSVHVTDVNRDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLK-THWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp SSCCCEECCBTTTTBCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECC-TTSCHHHHTCCTTCBBCBB
T ss_pred cCcEEEEEEEecCCccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhc-chhhHhhhceeccccceec
Confidence 44444444333 388999999999999999999877665322 1122221 1 2355 8889999999999988754
Q ss_pred e
Q 008120 100 L 100 (577)
Q Consensus 100 l 100 (577)
.
T Consensus 101 p 101 (112)
T 2lgx_A 101 P 101 (112)
T ss_dssp C
T ss_pred C
Confidence 3
No 276
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=47.00 E-value=75 Score=26.34 Aligned_cols=65 Identities=9% Similarity=0.070 Sum_probs=38.2
Q ss_pred eEEEEEeC--CCCCHHHHHHHHHHhhC-Ccccc------E------EEEEcCeeccCCCCcccccccccccccceeeeec
Q 008120 39 SLVPMRVL--ETDSIESVKLRIQTCKG-FVVKK------Q------KLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLS 103 (577)
Q Consensus 39 ~~~~leV~--~sdTV~~LK~kI~~~~G-ip~~~------Q------rLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLs 103 (577)
+...+++. ...||++|...+.+... ....- . .+.-+|+-.. ...=.++-+++|+.|.+...++
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~--~~~~~d~~L~dgDeVa~~Ppv~ 97 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE--LEGEKDYILEDGDIISFTSTLH 97 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG--GGTGGGCBCCTTCEEEEEECTT
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc--ccCCCCcCcCCCCEEEEECCCC
Confidence 56777776 67899999999987763 11110 1 1233444211 0001356788899988776665
Q ss_pred cc
Q 008120 104 DL 105 (577)
Q Consensus 104 d~ 105 (577)
||
T Consensus 98 GG 99 (99)
T 2qjl_A 98 GG 99 (99)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 277
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=46.97 E-value=34 Score=37.78 Aligned_cols=72 Identities=13% Similarity=0.039 Sum_probs=53.1
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECC-----eecCCCCcccccCCCCCCEEEEEEe
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDG-----EKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~G-----r~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
+.+.|.+.+| ++.+.|+++.|+.+|=..|....|+. ..+-.-|.|-. ..|+....+.+.++..+..+.|.+|
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~-e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLR-EVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCC-CGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCC-CccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 5667777888 67899999999999999999999976 35566777732 3566667777766555566555555
No 278
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=46.81 E-value=71 Score=26.40 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=38.5
Q ss_pred ceeEEeeccCCchhhhHHHHHhhCC-CC---C----C-CCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 116 KELEFHIDRYRNVGYLKQRIARKGK-GF---V----D-VVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 116 k~~~i~Vd~~~TV~~LK~kI~~~~g-i~---~----p-~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
....+++....||.+|.+.+..... .. . . .....+..||+.... +.-+++|+.|.++
T Consensus 27 ~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 27 DEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGDVVGVF 92 (98)
T ss_dssp SEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCCEEEEE
Confidence 4567888778999999999987642 00 0 0 133456678887753 5567888888764
No 279
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=46.23 E-value=39 Score=27.53 Aligned_cols=61 Identities=5% Similarity=0.056 Sum_probs=38.8
Q ss_pred EEEeCCCCCHHHHHHHHHHhhCCc-----c--------ccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 42 PMRVLETDSIESVKLRIQTCKGFV-----V--------KKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 42 ~leV~~sdTV~~LK~kI~~~~Gip-----~--------~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
.+++ ...||++|...+.....-- . ..-.+..+|+... +. .=.++-+++|+.|.+...++||
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~-~~-~~~~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVR-FS-GGLATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGG-GT-TGGGCBCCTTCEEEEEECCTTC
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEcc-Cc-CCCCcCCCCCCEEEEECCCCCC
Confidence 4664 4679999999998765210 0 1235556777664 21 1125668889999888776654
No 280
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=45.95 E-value=58 Score=36.30 Aligned_cols=66 Identities=8% Similarity=0.075 Sum_probs=46.7
Q ss_pred CceeEEeeccCCchhhhHHHHHhhC--CCCC----CCCceEEEE----CCe-ecCC-------------CCcccccCCCC
Q 008120 115 GKELEFHIDRYRNVGYLKQRIARKG--KGFV----DVVDQEIFC----DGE-KLDD-------------QRLIDDICKDN 170 (577)
Q Consensus 115 Gk~~~i~Vd~~~TV~~LK~kI~~~~--gi~~----p~~~QrLif----~Gr-~LeD-------------~~tLsdy~I~~ 170 (577)
...+.+.|-..+||.++|+||-... |.|. .+++..|-+ .|+ .|.| =+||.+|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 4667888989999999999996652 3331 356777766 233 3444 14789999999
Q ss_pred CCEEEEEEec
Q 008120 171 DAVIHLLVQK 180 (577)
Q Consensus 171 ~svI~Lvvrk 180 (577)
|+++-|+-+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999997654
No 281
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=45.32 E-value=40 Score=37.63 Aligned_cols=64 Identities=11% Similarity=0.137 Sum_probs=46.3
Q ss_pred ceeEEeeccCCchhhhHHHHHhh--CCCCC----CCCceEEEE----CCe-ecCCC-------------CcccccCCCCC
Q 008120 116 KELEFHIDRYRNVGYLKQRIARK--GKGFV----DVVDQEIFC----DGE-KLDDQ-------------RLIDDICKDND 171 (577)
Q Consensus 116 k~~~i~Vd~~~TV~~LK~kI~~~--~gi~~----p~~~QrLif----~Gr-~LeD~-------------~tLsdy~I~~~ 171 (577)
..+.+.|-..+||.++|+||-.. .|.|. .+++..|-+ .|+ .|.|. +||.+|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 56778888999999999999744 23331 246667776 233 35552 48899999999
Q ss_pred CEEEEEEe
Q 008120 172 AVIHLLVQ 179 (577)
Q Consensus 172 svI~Lvvr 179 (577)
+++-|+-+
T Consensus 354 a~v~L~p~ 361 (644)
T 3hm6_X 354 ATVALVPC 361 (644)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEec
Confidence 99998655
No 282
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=45.31 E-value=23 Score=28.64 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=45.0
Q ss_pred EEeCCeEEEEEeC--CCCCHHHHHHHHHHhhCCc-cccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 34 LSVSGSLVPMRVL--ETDSIESVKLRIQTCKGFV-VKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 34 Vtl~G~~~~leV~--~sdTV~~LK~kI~~~~Gip-~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
|+++|+.+. +. ...||.+|-..+ +++ +..--+..+|..+.+ ....++-+++|+.|.++-...||
T Consensus 3 I~vNGe~~e--~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr--~~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 3 LTVNGKPST--VDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLER--EAFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp EEETTEEEE--CSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCT--THHHHCEECSSBCEEECCCCCCS
T ss_pred EEECCEEEE--cCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECCh--HHcCcccCCCCCEEEEEeeecCC
Confidence 455676554 45 678999988765 565 555567799999873 45556778899999877666554
No 283
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=45.30 E-value=49 Score=28.70 Aligned_cols=76 Identities=8% Similarity=0.034 Sum_probs=46.2
Q ss_pred CcEEEEEE-------eCC--eEEEEEeCC---CCCHHHHHHHHHHhh-CCc---------ccc-EEEEEcCeeccCCCCc
Q 008120 28 ESILIYLS-------VSG--SLVPMRVLE---TDSIESVKLRIQTCK-GFV---------VKK-QKLVFGGRELARNHSL 84 (577)
Q Consensus 28 ~sM~I~Vt-------l~G--~~~~leV~~---sdTV~~LK~kI~~~~-Gip---------~~~-QrLif~Gk~L~~D~~t 84 (577)
+.|+|+|. +.| +.+.+++.. ..||.+|-..+.+.. ++. ... -.++-||+... ...
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~--~l~ 87 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE--LLG 87 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHH--HHC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeee--ccC
Confidence 56999984 233 367788884 359999999998775 111 011 12223443211 001
Q ss_pred ccccccccccccceeeeeccc
Q 008120 85 VKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 85 L~dygI~dgstL~LvlrLsd~ 105 (577)
=.+|-+++|+.|.++..+.++
T Consensus 88 gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCC
Confidence 135788999999888888877
No 284
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=44.94 E-value=17 Score=28.97 Aligned_cols=63 Identities=10% Similarity=0.129 Sum_probs=45.3
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 34 LSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 34 Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
|+++|+.+.+ ...||.+|-+. .+++++.--+..+|..+.+ ....++-+++|+.|.++-...||
T Consensus 3 I~vNG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr--~~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 3 VTINGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPR--GKWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp EEETTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECH--HHHTTCBCCTTCEEEEECCCCCC
T ss_pred EEECCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECCh--HHcCcccCCCCCEEEEEccccCC
Confidence 3556775554 66899998764 5677777778899998873 34556778899999877666554
No 285
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=44.59 E-value=69 Score=24.90 Aligned_cols=61 Identities=11% Similarity=0.020 Sum_probs=40.4
Q ss_pred ccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 105 LLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 105 ~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
.|.|+|+-.. ....+++....||.+|.+++. .. .....+..+|+....+. -+++|+.|.++
T Consensus 4 ~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l~----~~--~~~v~vavN~~~v~~~~-----~L~~gD~V~ii 64 (70)
T 1ryj_A 4 GMKFTVITDD-GKKILESGAPRRIKDVLGELE----IP--IETVVVKKNGQIVIDEE-----EIFDGDIIEVI 64 (70)
T ss_dssp CEEEEEEETT-EEEEEEESSCCBHHHHHHHTT----CC--TTTEEEEETTEECCTTS-----BCCTTCEEEEE
T ss_pred eEEEEEeCcc-CceeEECCCCCcHHHHHHHhC----CC--CCCEEEEECCEECCCcc-----cCCCCCEEEEE
Confidence 3666655322 123456777789999988763 33 45556778999987543 57788888875
No 286
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=44.00 E-value=23 Score=30.33 Aligned_cols=61 Identities=7% Similarity=0.070 Sum_probs=45.1
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEE--E----CCeecCCCCcccccC
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIF--C----DGEKLDDQRLIDDIC 167 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLi--f----~Gr~LeD~~tLsdy~ 167 (577)
.-|.|-..+|....+.|+.++|+.++=+++..+.+.. +.....|+ + --|.++|+..+-+.-
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~-~~~~WaLvE~~P~L~~ER~~EDHE~vvevl 76 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL-SDETWGLVECHPHLALERGLEDHESVVEVQ 76 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC-CCCCCCEEEEETTTTEEEEECSSSCHHHHH
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC-CCCCeEEEEecCCCCcEEeccCchhHHHHH
Confidence 3455667889999999999999999999999998855 23444444 1 236788887776653
No 287
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=43.97 E-value=49 Score=28.29 Aligned_cols=43 Identities=12% Similarity=0.068 Sum_probs=35.5
Q ss_pred CCCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCcccc
Q 008120 26 SSESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKK 68 (577)
Q Consensus 26 ~~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~ 68 (577)
+....-|.| ..+|+..+|.|++++|+.++-+.+..+.+.....
T Consensus 6 ~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~ 49 (100)
T 1wgr_A 6 SGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDE 49 (100)
T ss_dssp CCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCC
T ss_pred cCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCC
Confidence 355567777 6789999999999999999999999888765443
No 288
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=43.89 E-value=35 Score=29.17 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=32.8
Q ss_pred CcEEEEEEeC--------CeEEEEEeCCCCCHHHHHHHHHHhhCCc
Q 008120 28 ESILIYLSVS--------GSLVPMRVLETDSIESVKLRIQTCKGFV 65 (577)
Q Consensus 28 ~sM~I~Vtl~--------G~~~~leV~~sdTV~~LK~kI~~~~Gip 65 (577)
.+|+|.|..+ +..+.|.|.++.+..+|..+|..+.+++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 4588888655 6689999999999999999999998876
No 289
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=40.50 E-value=42 Score=26.79 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=38.7
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEE
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHL 176 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~L 176 (577)
|+|+|+........+++....||.+|-+ ..+++ ++.--+..||+.+.-+. +.+|+.|.+
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~--~~~VvV~vNG~~v~~d~------~l~GD~VeI 59 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLS--PHEVTVLVDGRPVPEDQ------SVEVDRVKV 59 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCC--SSCCCEECCCCCCCTTS------SSCCCCEEE
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCC--cceEEEEECCEECCHHH------CCCCCEEEE
Confidence 5666666533445588999999988644 45665 56666778999886444 224677765
No 290
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=40.27 E-value=34 Score=26.26 Aligned_cols=63 Identities=8% Similarity=0.093 Sum_probs=42.5
Q ss_pred EEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 34 LSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 34 Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
|+++|+.+ ++....||.+|.+.+ +++...-.+..+|+.+.+ ....++-+++|+.|.+.-...|
T Consensus 3 i~vNg~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~--~~~~~~~L~~gD~v~i~~~V~G 65 (66)
T 1f0z_A 3 ILFNDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPR--EQWAQHIVQDGDQILLFQVIAG 65 (66)
T ss_dssp EEESSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH--HHHTTCCCCTTEEECEEESCCC
T ss_pred EEECCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc--hhcCCcCCCCCCEEEEEeeccc
Confidence 34566654 456778999999876 455555667788888762 2233556788999987765554
No 291
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=39.34 E-value=41 Score=33.61 Aligned_cols=63 Identities=11% Similarity=-0.094 Sum_probs=48.8
Q ss_pred cccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEEC---C--eecCCCCcccccC
Q 008120 104 DLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCD---G--EKLDDQRLIDDIC 167 (577)
Q Consensus 104 d~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~---G--r~LeD~~tLsdy~ 167 (577)
..+.+.|...+|....+.|++..|+.+|=++|....|+. ..+---|.|. | ..|+..+.+.+..
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~-e~~~FgL~~~~~~~~~~wLd~~k~i~~q~ 83 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLL-EEDYFGLAIWDNATSKTWLDSAKEIKKQV 83 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCS-SGGGEEEEEEEETTEEEECCTTSBHHHHC
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCC-CcceeEEEEEcCCCccchhccchhHHHhc
Confidence 346788889999999999999999999999999999976 3555677763 2 3466666666654
No 292
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=38.38 E-value=45 Score=25.58 Aligned_cols=63 Identities=6% Similarity=-0.083 Sum_probs=39.3
Q ss_pred cccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120 106 LLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ 179 (577)
Q Consensus 106 m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr 179 (577)
|.|.|...+|+. +++....|+.++-+.+....+ ....-...+|+..+- ++-+++|+.|.++-.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~----~~~vaa~vNg~lvdl-----~~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG----DHCIGAKVNHKLVPL-----SYVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH----HTEEEEEETTEECCT-----TCBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc----cceEEEEECCEEeCC-----CcCcCCCCEEEEEEC
Confidence 556677667876 456678999999887744321 111223468876653 345567788877644
No 293
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=38.20 E-value=85 Score=26.85 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=49.0
Q ss_pred EEEEEE-eC---CeEEEEEeCCCCCHHHHHHHHHHhhCCcc--ccEEEEEcC---eeccCCCCccccccccccccccee
Q 008120 30 ILIYLS-VS---GSLVPMRVLETDSIESVKLRIQTCKGFVV--KKQKLVFGG---RELARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 30 M~I~Vt-l~---G~~~~leV~~sdTV~~LK~kI~~~~Gip~--~~QrLif~G---k~L~~D~~tL~dygI~dgstL~Lv 99 (577)
..|+|+ ++ ....+++|..+.-|+-+..+|-+...++. +.--|-.-- ..|. ...+|..|||+.++.++..
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlk-t~~tLDkygiqADa~L~ft 97 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLK-THWTLDKCGVQADANLLFT 97 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECC-TTSBHHHHTCCTTSCEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhh-hhhhhhhhceeeeeeeecc
Confidence 455554 33 26699999999999999999997776542 223333321 2455 8899999999999988754
No 294
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=36.53 E-value=26 Score=39.58 Aligned_cols=51 Identities=24% Similarity=0.373 Sum_probs=41.6
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEc-CeeccCCCCccccc
Q 008120 37 SGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFG-GRELARNHSLVKDY 88 (577)
Q Consensus 37 ~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~-Gk~L~~D~~tL~dy 88 (577)
..+.+.+.+.+++|+.+++..|++.+||+++.|.+++. |..+. ......+|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~-p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALN-SAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCC-TTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCC-CCcchhhh
Confidence 45677899999999999999999999999999999986 45555 55555543
No 295
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=34.48 E-value=22 Score=31.70 Aligned_cols=33 Identities=6% Similarity=-0.017 Sum_probs=29.1
Q ss_pred eEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEE
Q 008120 118 LEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFC 152 (577)
Q Consensus 118 ~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif 152 (577)
..+.|-.+.|+.++|.+|++.+|++ +++|||-.
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~--~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFP--QDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCC--GGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCC--cccEEEEE
Confidence 4578889999999999999999987 89999763
No 296
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=33.02 E-value=1.2e+02 Score=25.85 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=57.0
Q ss_pred cccccccCC---CceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECC---eecCCCCcccccCCCCCCEEEEEE
Q 008120 106 LLITVRTSC---GKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDG---EKLDDQRLIDDICKDNDAVIHLLV 178 (577)
Q Consensus 106 m~I~Vrt~~---Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~G---r~LeD~~tLsdy~I~~~svI~Lvv 178 (577)
++|+|...+ ....++.|....-|+-|-.+|-++.++..+=++.-|-.-- ..|.-..+|..|||+-++.+++.-
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 466666654 3678899999999999999998887766556677777643 346788999999999999999754
No 297
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=32.97 E-value=1.1e+02 Score=30.24 Aligned_cols=71 Identities=8% Similarity=-0.017 Sum_probs=50.5
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCcccc-EEEEE--cCe--eccCCCCccccccccccccccee
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKK-QKLVF--GGR--ELARNHSLVKDYGVTGGNVLHLV 99 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~-QrLif--~Gk--~L~~D~~tL~dygI~dgstL~Lv 99 (577)
...+.+.| .++| ++.+.|+++.|+.+|=+.|....|+.-.+ .-|.| .|. -|. .+.++.+.++..+....+.
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~-~~~~i~~q~~~~~~~~~l~ 96 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLK-MDKKVLDHDVSKEEPVTFH 96 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECC-TTSBGGGSSCCCSSSEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCC-CccCHHHcCCCCCCCEEEE
Confidence 57788999 4677 78899999999999999999999986432 35555 332 255 6777887765544444333
No 298
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=32.00 E-value=1.2e+02 Score=23.54 Aligned_cols=53 Identities=19% Similarity=0.124 Sum_probs=34.5
Q ss_pred EeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 120 FHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 120 i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
+++ ...||.+|.+.+....+...-.....+.-||+...+ .+.-+++|+.|.++
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 556 568999999999875432100134456678877543 34567889998875
No 299
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=31.86 E-value=2.4e+02 Score=27.49 Aligned_cols=67 Identities=12% Similarity=0.055 Sum_probs=46.2
Q ss_pred cEEEEEE-eCCeEEEEEeCCCCCHHHHHHHHHHhhCCcccc-EEEEEc---Ce--eccCCCCcccccccccccccc
Q 008120 29 SILIYLS-VSGSLVPMRVLETDSIESVKLRIQTCKGFVVKK-QKLVFG---GR--ELARNHSLVKDYGVTGGNVLH 97 (577)
Q Consensus 29 sM~I~Vt-l~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~-QrLif~---Gk--~L~~D~~tL~dygI~dgstL~ 97 (577)
.|.+.|. ++| ++.+.|++..|+.+|=+.|.+..|+.... .-|.+. |. -|. .+.++.+.++..+....
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd-~~~~l~~q~~~~~~~~~ 74 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLK-LNKKVTAQDVRKESPLL 74 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECC-SSSBGGGSCBCCCSSEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecc-cccCHHhhccCCCCCEE
Confidence 3678884 555 78899999999999999999999986443 345552 32 244 66677776554444333
No 300
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=31.62 E-value=1.4e+02 Score=25.52 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=42.0
Q ss_pred CCCcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeec
Q 008120 26 SSESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGREL 78 (577)
Q Consensus 26 ~~~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L 78 (577)
....++|.....|.+..|.+..--+..+|..|+...+|-+ .-|.|...+|
T Consensus 5 ~~~dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~---ldL~y~n~El 54 (103)
T 2cu1_A 5 SSGDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS---MDLHYTNNEL 54 (103)
T ss_dssp SSCEEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSC---EEEEECSSSS
T ss_pred ccCcEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCe---eeEEEecceE
Confidence 4577888888899999999999999999999999999975 4477874443
No 301
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=30.22 E-value=45 Score=25.96 Aligned_cols=59 Identities=3% Similarity=0.020 Sum_probs=40.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCCccccE--EEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 39 SLVPMRVLETDSIESVKLRIQTCKGFVVKKQ--KLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 39 ~~~~leV~~sdTV~~LK~kI~~~~Gip~~~Q--rLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
+...+++....||.+|.+.+..... ....- .+..+|+... . +.-+++|+.|.+....+|
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~-~-----~~~L~~gD~V~i~ppv~G 76 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQ-K-----SDFIQPNDTVALIPPVSG 76 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEEC-T-----TSEECTTCEEEEECSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECC-C-----CCCcCCCCEEEEECCCCC
Confidence 4567777788899999999876631 01222 5667888876 3 356778998887665554
No 302
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=29.58 E-value=53 Score=25.80 Aligned_cols=60 Identities=8% Similarity=0.081 Sum_probs=39.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC-----CccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120 39 SLVPMRVLETDSIESVKLRIQTCKG-----FVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 39 ~~~~leV~~sdTV~~LK~kI~~~~G-----ip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~ 105 (577)
....++ ....||.+|.+.+..... ++...-.+..+|+... . +.-+++|+.|.+....+||
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~-~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS-F-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECC-T-----TCBCCTTCEEEEECCCCCC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECC-C-----CCCCCCCCEEEEeCCCCCC
Confidence 455666 567899999999875531 1122235667888665 3 4567789998887665553
No 303
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=28.47 E-value=25 Score=28.05 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=37.6
Q ss_pred EEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 42 PMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 42 ~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
.+++....||.+|.+.+ +++...-.+..+|+... .+ +-+++|+.|.+....+|
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~-~~-----~~L~dGD~V~i~ppv~G 76 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVL-ED-----DEVKDGDFVEVIPVVSG 76 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEEC-SS-----SCCCSSCCCBCSCCCCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECC-CC-----CCcCCCCEEEEEccccc
Confidence 44566778999998765 45555556778899887 32 56788999887765554
No 304
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=28.41 E-value=1.3e+02 Score=24.06 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=39.5
Q ss_pred ceeEEeeccCCchhhhHHHHHhhCCC-----CCC---C-CceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 008120 116 KELEFHIDRYRNVGYLKQRIARKGKG-----FVD---V-VDQEIFCDGEKLDDQRLIDDICKDNDAVIHLL 177 (577)
Q Consensus 116 k~~~i~Vd~~~TV~~LK~kI~~~~gi-----~~p---~-~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lv 177 (577)
.+..+++....||.+|.+.+...... ... . ....+.-||+.... +.-+++|+.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 56678887789999999999887531 100 0 12466778888764 4567888888875
No 305
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=27.69 E-value=63 Score=29.70 Aligned_cols=31 Identities=13% Similarity=0.057 Sum_probs=27.1
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCCHHHHHHH
Q 008120 27 SESILIYLSVSGSLVPMRVLETDSIESVKLR 57 (577)
Q Consensus 27 ~~sM~I~Vtl~G~~~~leV~~sdTV~~LK~k 57 (577)
.+.|.|.++++|+.+.+++.+++||.++-..
T Consensus 7 ~~~m~i~~~ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 7 SQLMRISATINGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHH
T ss_pred CCcceEEEEECCEEEEEecCCCCcHHHHHHh
Confidence 4679999999999999999999999887654
No 306
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=26.69 E-value=1.1e+02 Score=25.48 Aligned_cols=48 Identities=10% Similarity=-0.057 Sum_probs=37.1
Q ss_pred ccccc-CCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCee
Q 008120 108 ITVRT-SCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEK 156 (577)
Q Consensus 108 I~Vrt-~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~ 156 (577)
|.||. .+|..+.+.++++.+-.+|.++++...+.. ..+...|.|...+
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~-~~~~f~lky~DEe 55 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFD-NEQLFTMKWIDEE 55 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCC-SSCCEEEEECCSS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCC-CCCeEEEEEECCC
Confidence 34443 457888899999999999999999999865 2344678887765
No 307
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=26.42 E-value=1.1e+02 Score=30.84 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=42.2
Q ss_pred CceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECC-eecCCCCc-ccccCC-CCCCEEEE
Q 008120 115 GKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDG-EKLDDQRL-IDDICK-DNDAVIHL 176 (577)
Q Consensus 115 Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~G-r~LeD~~t-Lsdy~I-~~~svI~L 176 (577)
-....+.+.+..|+..+++++++..++. +++|.|+|.+ ...-+... -..|.- .....+.|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~--~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTKII--SSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFV 383 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCC--STTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEE
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcCCC--hhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEE
Confidence 3455678889999999999999999987 8999999988 44444333 344332 23344444
No 308
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=24.70 E-value=2.5e+02 Score=24.18 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=44.0
Q ss_pred cccccCCcccCCCccCCCCCCCCCCcEEEEEEeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeecc
Q 008120 4 ADIALNPIQHSPGYCNNLTGRSSSESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELA 79 (577)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~sM~I~Vtl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~ 79 (577)
.||-|..-+ -+|.+..+|.....++|.....|....|.+..--...+|.+++...+|-+.+ |+|-..+|.
T Consensus 9 ~~~~~~~~~---~~~k~~~~~~~q~dvRIKfE~~gEKRIiqf~RPvkf~dl~qkv~~afGq~ld---l~y~nnEL~ 78 (111)
T 2c60_A 9 SGVDLGTEN---LYFQSMGHSNRQSDVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQPLD---LHYMNNELS 78 (111)
T ss_dssp -----CTTT---C-----------CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHSSCCE---EEEECSSCE
T ss_pred cccccCccc---eeeecCCCcccccceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee---eEEecceEE
Confidence 455555533 2343323455578899999999999999999999999999999999997644 777655553
No 309
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=24.43 E-value=48 Score=24.70 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 008120 485 QDIELLKFYGWNIPLECARTLRISTMLLKKGVE 517 (577)
Q Consensus 485 ~d~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~ 517 (577)
..++.|.+.||.=++.+++.|+.+-.++.+|++
T Consensus 13 ~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave 45 (53)
T 2knz_A 13 QQLEQLNSMGFINREANLQALIATGGDINAAIE 45 (53)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 357888999996678899999999999998875
No 310
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=24.06 E-value=56 Score=24.27 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 008120 484 EQDIELLKFYGWNIPLECARTLRISTMLLKKGVE 517 (577)
Q Consensus 484 ~~d~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~ 517 (577)
+..++.|.+.||.-++.+++.|+.+-..+.+|++
T Consensus 13 ~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e 46 (52)
T 2jy5_A 13 QQQLEQLSAMGFLNREANLQALIATGGDINAAIE 46 (52)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 3467888889996678899999999888988875
No 311
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=22.98 E-value=1.5e+02 Score=24.42 Aligned_cols=71 Identities=8% Similarity=0.152 Sum_probs=41.8
Q ss_pred EEEEEEe-------CC-eEEEEEeCCCCCHHHHHHHHHHhhC-Ccc---c------cE-------EEEEcCeeccCCCCc
Q 008120 30 ILIYLSV-------SG-SLVPMRVLETDSIESVKLRIQTCKG-FVV---K------KQ-------KLVFGGRELARNHSL 84 (577)
Q Consensus 30 M~I~Vtl-------~G-~~~~leV~~sdTV~~LK~kI~~~~G-ip~---~------~Q-------rLif~Gk~L~~D~~t 84 (577)
|+|+|.+ .| +...++ ..||.+|.+.+..... +.. + .- .+..+|+... .. .
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~-~~-~ 78 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIR-HL-E 78 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGG-GT-T
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcc-cc-C
Confidence 6777742 13 345454 6899999999987631 110 0 11 4667777653 11 1
Q ss_pred ccccccccccccceeeeeccc
Q 008120 85 VKDYGVTGGNVLHLVLKLSDL 105 (577)
Q Consensus 85 L~dygI~dgstL~LvlrLsd~ 105 (577)
-.++-+++|+.|.+.....||
T Consensus 79 ~~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 79 GLETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp STTSCCCTTEEEEEECCCSCC
T ss_pred CCCCCCCCCCEEEEECCCCCC
Confidence 235567889988877655543
No 312
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=22.30 E-value=1.6e+02 Score=23.32 Aligned_cols=60 Identities=12% Similarity=0.170 Sum_probs=38.1
Q ss_pred EEeCCCCCHHHHHHHHHHhhC------C-----ccccEEEEEcCeeccCCCCcccccccccccccceeeeecc
Q 008120 43 MRVLETDSIESVKLRIQTCKG------F-----VVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSD 104 (577)
Q Consensus 43 leV~~sdTV~~LK~kI~~~~G------i-----p~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd 104 (577)
+++....||.+|.+.+..... + ....-.+..+|+...+ ..-.++-+++|+.|.+....+|
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~--~~~~~~~l~~gD~V~i~ppv~G 89 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITS--MKGLDTEIKDDDKIDLFPPVAG 89 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGG--TCSSSCBCCTTCEEEEECCTTC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccc--cCCCCcCCCCCCEEEEeCCCCC
Confidence 455667899999999977641 1 0123356678876641 1223556888999887765554
No 313
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=22.25 E-value=2e+02 Score=24.67 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=39.5
Q ss_pred CCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEE---EcCe
Q 008120 27 SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLV---FGGR 76 (577)
Q Consensus 27 ~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLi---f~Gk 76 (577)
.+.+...| ..+.+..++++..+.|+.+|+.-+.++.+..-+.+.|+ ++|.
T Consensus 7 sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGE 60 (104)
T 1wgy_A 7 GEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGE 60 (104)
T ss_dssp SSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCC
T ss_pred CCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCc
Confidence 44555555 34667889999999999999999999999877788887 4564
No 314
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=21.92 E-value=52 Score=25.28 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCCHHHHhhcccccC
Q 008120 509 TMLLKKGVERGLSAFSIGSIMCRET 533 (577)
Q Consensus 509 ~~~Lk~~~~~glt~~~i~~~~~r~~ 533 (577)
..|+++|-+.|+|+.||..++....
T Consensus 16 l~LI~~Ak~lGlsleEIrefL~l~~ 40 (57)
T 1b0n_B 16 VELMVEAKEANISPEEIRKYLLLNK 40 (57)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 4589999999999999999987653
No 315
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=21.06 E-value=62 Score=22.73 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 008120 484 EQDIELLKFYGWNIPLECARTLRISTMLLKKGVE 517 (577)
Q Consensus 484 ~~d~~~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~ 517 (577)
++.++.|.+.||+ ++.|.+.|+.+-..+..|+.
T Consensus 5 e~~i~~L~~MGF~-~~~a~~AL~~~~~n~e~A~~ 37 (43)
T 2g3q_A 5 SLAVEELSGMGFT-EEEAHNALEKCNWDLEAATN 37 (43)
T ss_dssp HHHHHHHHTTTSC-HHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHhCcCHHHHHH
Confidence 3456788888987 48899999998888888764
No 316
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=20.94 E-value=20 Score=31.08 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=43.0
Q ss_pred cEEEEEE-------eCCeEEEEEeCC----CCCHHHHHHHHHHhhCCccccEEEE-EcC--e------eccCCCCcc---
Q 008120 29 SILIYLS-------VSGSLVPMRVLE----TDSIESVKLRIQTCKGFVVKKQKLV-FGG--R------ELARNHSLV--- 85 (577)
Q Consensus 29 sM~I~Vt-------l~G~~~~leV~~----sdTV~~LK~kI~~~~Gip~~~QrLi-f~G--k------~L~~D~~tL--- 85 (577)
.|+|.|+ +-|+...+++.. ..||.+|-..+.+... .....|+ -+| . .|- |+...
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~--~~r~~lf~~~g~~~lrpgIlVLV-Ng~d~e~l 80 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV--KERPDLLVDQTGQTLRPGILVLV-NSCDAEVV 80 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC--CSCHHHHBCSSSSSBCTTEEEEE-SSSBHHHH
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc--ccchhhEecCCCcccCCCeEEEE-CCeeeecc
Confidence 4777773 234555677763 2499999888877642 1122222 112 1 233 22222
Q ss_pred --cccccccccccceeeeecccc
Q 008120 86 --KDYGVTGGNVLHLVLKLSDLL 106 (577)
Q Consensus 86 --~dygI~dgstL~LvlrLsd~m 106 (577)
.+|-+++|++|.+...+.|+.
T Consensus 81 ~gldt~L~dgD~V~fistlhg~~ 103 (110)
T 2k9x_A 81 GGMDYVLNDGDTVEFISTLHGGL 103 (110)
T ss_dssp TSSCCCCCSSCEEEEEECCCCC-
T ss_pred CCcccCCCCcCEEEEeCCCcccc
Confidence 357789999988877777764
No 317
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=20.09 E-value=1.1e+02 Score=34.34 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=40.8
Q ss_pred CCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCe-ecCCCCccccc
Q 008120 113 SCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGE-KLDDQRLIDDI 166 (577)
Q Consensus 113 ~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr-~LeD~~tLsdy 166 (577)
...+...+.+.+..|+..++..|...++++ ++.|.+++.+. .++.....+.|
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~--~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIP--EEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCC--STTCEEESSSSCCCCTTSCGGGS
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCC--HHHHHHHhccCCCCCCCcchhhh
Confidence 456677789999999999999999999987 89999998654 44444455543
Done!