BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008122
(577 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NXC|A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals
The Molecular Basis For Substrate Specificity Among
Class I Enzymes (Family 47 Glycosidases)
Length = 478
Score = 231 bits (590), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 161/493 (32%), Positives = 253/493 (51%), Gaps = 58/493 (11%)
Query: 20 LFPVSVSEVDSSYWSAKKRHMKKKVHDMFYHAYENYLTHAFPHDELKPLSKSFTDSLSEL 79
L PV V + + A R + K+ +M HA+ NY +A+ +ELKP+SK S S
Sbjct: 2 LPPVGVENREPA--DATIREKRAKIKEMMTHAWNNYKRYAWGLNELKPISKE-GHSSSLF 58
Query: 80 GNLKLEHLPQHYNGSALTLIESMSSLVIMGNNTEFERAVLWLSENLNFDVDARINLFECN 139
GN+K T+++++ +L IMG TEF+ A W+ + L+F+V+A +++FE N
Sbjct: 59 GNIK-----------GATIVDALDTLFIMGMKTEFQEAKSWIKKYLDFNVNAEVSVFEVN 107
Query: 140 IRVLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAFDTPTGLPYAWINLKY 199
IR +GGL+SA+ L+ + R A +LG + LPAF TP+G+P+A +N+K
Sbjct: 108 IRFVGGLLSAYYLSGEEIFR-----------KKAVELGVKLLPAFHTPSGIPWALLNMKS 156
Query: 200 GVMENETNETSTSGC----GSLILEMGALSRLTGDPIYESAALRALRRLWSMRSSLNLLG 255
G+ N + S G+L LE LS L+GDP++ ++ L + L
Sbjct: 157 GIGRNWPWASGGSSILAEFGTLHLEFMHLSHLSGDPVFAEKVMKIRTVLNKLDKPEGLYP 216
Query: 256 TTLDVTTGEWIEYSSGIGAGVDSFYEYLFKAHILFGKEDF--WRMFHSAYLAVQKYF--- 310
L+ ++G+W ++ +G DSFYEYL KA ++ K D +M+ A A++ +
Sbjct: 217 NYLNPSSGQWGQHHVSVGGLGDSFYEYLLKAWLMSDKTDLEAKKMYFDAVQAIETHLIRK 276
Query: 311 RHGPWYHEADMRNGKATYWQLTSLQAFWPGLQVLVGDIAA--------------ANSSHR 356
G + A+ + G + ++ L F G+ L D A A + H
Sbjct: 277 SSGGLTYIAEWKGGLLEH-KMGHLTCFAGGMFALGADGAPEARAQHYLELGAEIARTCHE 335
Query: 357 EFVHVWKKFGVLPERYLLD----HLMLHPTEKYYPLRPELAESTFYLYQATKDPWYLEVG 412
+ + K G PE + D + EKYY LRPE+ E+ Y+++ T DP Y
Sbjct: 336 SYNRTYVKLG--PEAFRFDGGVEAIATRQNEKYYILRPEVIETYMYMWRLTHDPKYRTWA 393
Query: 413 ESIVNSLNSYTKVDGGFASIRDVTTMQ--LEDHQHSFFLAETCKYLYLLF-DDSFLVDRN 469
V +L S+ +V+GG++ +RDV + +D Q SFFLAET KYLYL+F DD L +
Sbjct: 394 WEAVEALESHCRVNGGYSGLRDVYIARESYDDVQQSFFLAETLKYLYLIFSDDDLLPLEH 453
Query: 470 YVFTTEGHPLPVL 482
++F TE HP P+L
Sbjct: 454 WIFNTEAHPFPIL 466
>pdb|1X9D|A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase
In Complex With Thio-Disaccharide Substrate Analogue
Length = 538
Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 154/478 (32%), Positives = 238/478 (49%), Gaps = 65/478 (13%)
Query: 39 HMKKKVHDMFYHAYENYLTHAFPHDELKPLSKSFTDSLSELGNLKLEHLPQHYNGSALTL 98
+ +K V D+F HA++ Y A+ HDELKP+S+SF++ + G LTL
Sbjct: 87 YRQKGVIDVFLHAWKGYRKFAWGHDELKPVSRSFSE----------------WFGLGLTL 130
Query: 99 IESMSSLVIMGNNTEFERAVLWLSENLNFDVDARINLFECNIRVLGGLVSAHILATDSAN 158
I+++ ++ I+G EFE A W+S+ L+F+ D +NLFE IR+LGGL+SA+ L+ DS
Sbjct: 131 IDALDTMWILGLRKEFEEARKWVSKKLHFEKDVDVNLFESTIRILGGLLSAYHLSGDSL- 189
Query: 159 RLVQGSYKNQLLTLAEDLGRRFLPAFDTPTGLPYAWINLKYGVMENE--TNETSTSGCGS 216
L AED G R +PAF TP+ +PY+ +N+ GV T++++ + S
Sbjct: 190 ----------FLRKAEDFGNRLMPAFRTPSKIPYSDVNIGTGVAHPPRWTSDSTVAEVTS 239
Query: 217 LILEMGALSRLTGDPIYESAALRALRRLWSMRSSLN-LLGTTLDVTTGEWIEYSS-GIGA 274
+ LE LSRLTGD ++ A + + + + + L+ ++ +G + +GA
Sbjct: 240 IQLEFRELSRLTGDKKFQEAVEKVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGA 299
Query: 275 GVDSFYEYLFKAHILFGK------EDFWRMFHSAYLAVQKYFRHGPWYHEADMRNGKATY 328
DS+YEYL K I GK ED+ + ++ ++ +G+ +
Sbjct: 300 RADSYYEYLLKQWIQGGKQETQLLEDYVEAIEGVRTHLLRHSEPSKLTFVGELAHGRFSA 359
Query: 329 WQLTSLQAFWPGLQVLVGDIAAANSSHREFVHVWKK-------------------FGVLP 369
++ L F PG L G +SH E + F + P
Sbjct: 360 -KMDHLVCFLPGTLAL-GVYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVHFNLYP 417
Query: 370 ERYLLDHLMLHPTEKYYPLRPELAESTFYLYQATKDPWYLEVGESIVNSLNSYTKV-DGG 428
+ D + + P +++ LRPE ES FYLY+ T D Y + G I+ S + +T+V GG
Sbjct: 418 QPGRRD-VEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGG 476
Query: 429 FASIRDVTTMQL---EDHQHSFFLAETCKYLYLLFDD--SFLVDRNYVFTTEGHPLPV 481
++SI +V Q D SFFL ET KYL+LLF D + L YVF TE HPLP+
Sbjct: 477 YSSINNVQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLSLDAYVFNTEAHPLPI 534
>pdb|1FO2|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With 1-Deoxymannojirimycin
pdb|1FO3|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With Kifunensine
Length = 460
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 154/476 (32%), Positives = 237/476 (49%), Gaps = 65/476 (13%)
Query: 41 KKKVHDMFYHAYENYLTHAFPHDELKPLSKSFTDSLSELGNLKLEHLPQHYNGSALTLIE 100
+K V D+F HA++ Y A+ HDELKP+S+SF++ + G LTLI+
Sbjct: 11 QKGVIDVFLHAWKGYRKFAWGHDELKPVSRSFSE----------------WFGLGLTLID 54
Query: 101 SMSSLVIMGNNTEFERAVLWLSENLNFDVDARINLFECNIRVLGGLVSAHILATDSANRL 160
++ ++ I+G EFE A W+S+ L+F+ D +NLFE IR+LGGL+SA+ L+ DS
Sbjct: 55 ALDTMWILGLRKEFEEARKWVSKKLHFEKDVDVNLFESTIRILGGLLSAYHLSGDSL--- 111
Query: 161 VQGSYKNQLLTLAEDLGRRFLPAFDTPTGLPYAWINLKYGVMENE--TNETSTSGCGSLI 218
L AED G R +PAF TP+ +PY+ +N+ GV T++++ + S+
Sbjct: 112 --------FLRKAEDFGNRLMPAFRTPSKIPYSDVNIGTGVAHPPRWTSDSTVAEVTSIQ 163
Query: 219 LEMGALSRLTGDPIYESAALRALRRLWSMRSSLN-LLGTTLDVTTGEWIEYSS-GIGAGV 276
LE LSRLTGD ++ A + + + + + L+ ++ +G + +GA
Sbjct: 164 LEFRELSRLTGDKKFQEAVEKVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGARA 223
Query: 277 DSFYEYLFKAHILFGK------EDFWRMFHSAYLAVQKYFRHGPWYHEADMRNGKATYWQ 330
DS+YEYL K I GK ED+ + ++ ++ +G+ + +
Sbjct: 224 DSYYEYLLKQWIQGGKQETQLLEDYVEAIEGVRTHLLRHSEPSKLTFVGELAHGRFSA-K 282
Query: 331 LTSLQAFWPGLQVLVGDIAAANSSHREFVHVWKK-------------------FGVLPER 371
+ L F PG L G +SH E + F + P+
Sbjct: 283 MDHLVCFLPGTLAL-GVYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVHFNLYPQP 341
Query: 372 YLLDHLMLHPTEKYYPLRPELAESTFYLYQATKDPWYLEVGESIVNSLNSYTKV-DGGFA 430
D + + P +++ LRPE ES FYLY+ T D Y + G I+ S + +T+V GG++
Sbjct: 342 GRRD-VEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGGYS 400
Query: 431 SIRDVTTMQL---EDHQHSFFLAETCKYLYLLFDD--SFLVDRNYVFTTEGHPLPV 481
SI +V Q D SFFL ET KYL+LLF D + L YVF TE HPLP+
Sbjct: 401 SINNVQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLSLDAYVFNTEAHPLPI 456
>pdb|1FMI|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase
Length = 458
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 154/476 (32%), Positives = 237/476 (49%), Gaps = 65/476 (13%)
Query: 41 KKKVHDMFYHAYENYLTHAFPHDELKPLSKSFTDSLSELGNLKLEHLPQHYNGSALTLIE 100
+K V D+F HA++ Y A+ HDELKP+S+SF++ + G LTLI+
Sbjct: 11 QKGVIDVFLHAWKGYRKFAWGHDELKPVSRSFSE----------------WFGLGLTLID 54
Query: 101 SMSSLVIMGNNTEFERAVLWLSENLNFDVDARINLFECNIRVLGGLVSAHILATDSANRL 160
++ ++ I+G EFE A W+S+ L+F+ D +NLFE IR+LGGL+SA+ L+ DS
Sbjct: 55 ALDTMWILGLRKEFEEARKWVSKKLHFEKDVDVNLFESTIRILGGLLSAYHLSGDSL--- 111
Query: 161 VQGSYKNQLLTLAEDLGRRFLPAFDTPTGLPYAWINLKYGVMENE--TNETSTSGCGSLI 218
L AED G R +PAF TP+ +PY+ +N+ GV T++++ + S+
Sbjct: 112 --------FLRKAEDFGNRLMPAFRTPSKIPYSDVNIGTGVAHPPRWTSDSTVAEVTSIQ 163
Query: 219 LEMGALSRLTGDPIYESAALRALRRLWSMRSSLN-LLGTTLDVTTGEWIEYSS-GIGAGV 276
LE LSRLTGD ++ A + + + + + L+ ++ +G + +GA
Sbjct: 164 LEFRELSRLTGDKKFQEAVEKVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGARA 223
Query: 277 DSFYEYLFKAHILFGK------EDFWRMFHSAYLAVQKYFRHGPWYHEADMRNGKATYWQ 330
DS+YEYL K I GK ED+ + ++ ++ +G+ + +
Sbjct: 224 DSYYEYLLKQWIQGGKQETQLLEDYVEAIEGVRTHLLRHSEPSKLTFVGELAHGRFSA-K 282
Query: 331 LTSLQAFWPGLQVLVGDIAAANSSHREFVHVWKK-------------------FGVLPER 371
+ L F PG L G +SH E + F + P+
Sbjct: 283 MDHLVCFLPGTLAL-GVYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVHFNLYPQP 341
Query: 372 YLLDHLMLHPTEKYYPLRPELAESTFYLYQATKDPWYLEVGESIVNSLNSYTKV-DGGFA 430
D + + P +++ LRPE ES FYLY+ T D Y + G I+ S + +T+V GG++
Sbjct: 342 GRRD-VEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGGYS 400
Query: 431 SIRDVTTMQL---EDHQHSFFLAETCKYLYLLFDD--SFLVDRNYVFTTEGHPLPV 481
SI +V Q D SFFL ET KYL+LLF D + L YVF TE HPLP+
Sbjct: 401 SINNVQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLSLDAYVFNTEAHPLPI 456
>pdb|4AYO|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31
pdb|4AYP|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With
Thiomannobioside
pdb|4AYQ|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With
Mannoimidazole
pdb|4AYR|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With Noeuromycin
Length = 447
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 144/453 (31%), Positives = 222/453 (49%), Gaps = 44/453 (9%)
Query: 25 VSEVDSSYWSAKKRHMKKKVHDMFYHAYENYLTHAFPHDELKPLS---KSFTDSLSELGN 81
SE W A + V F A++ Y+ A+ DE+ P+S +SF +LG
Sbjct: 2 ASETTPEDWKA----LAADVRSEFQWAWQGYVAKAWGKDEINPVSGTSRSFFIEGHDLG- 56
Query: 82 LKLEHLPQHYNGSALTLIESMSSLVIMGNNTEFERAVLWLSENLNFDVDARINLFECNIR 141
L+L+E++ +L IMG + EF+ V W+ NL+FDVD +FE NIR
Sbjct: 57 --------------LSLVEALDTLWIMGLDAEFQAGVDWVKANLSFDVDGNAQVFETNIR 102
Query: 142 VLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAFD-TPTGLPYAWINLKYG 200
++GGL+SAH+ + D LL A DL R AF+ +P GLP+ ++NL+ G
Sbjct: 103 LVGGLLSAHLASGDPV-----------LLAKARDLADRLAKAFEASPHGLPWRYVNLRTG 151
Query: 201 VMENETNETSTSGCGSLILEMGALSRLTGDPIYESAALRALRRLWSMRSSLNLLGTTLDV 260
+ + ET+ + G+ + E G LS+LTG+ Y A RA+R RS + L+ +
Sbjct: 152 AVSDP--ETNLAEIGTYLSEFGVLSQLTGERKYFDMAKRAMRHTLDRRSKIGLMAANIHA 209
Query: 261 TTGEWIEYSSGIGAGVDSFYEYLFKAHILFGKEDFWRMF---HSAYLAVQ-KYFRHGPWY 316
TG + ++ I DSFYEYL+ A LFG ED R A LA Q K + W+
Sbjct: 210 MTGAFTSRNASIDVYADSFYEYLWDAWALFGDEDCKRWAVECVDAQLAHQAKRYDGRLWF 269
Query: 317 HEADMRNGKATYWQLTSLQAFWPGLQVLVGDIAAANSSHREFVHVWKKFGVLPERYLLDH 376
D G T + L A++ GL VG A + F ++ FGV+PE +D
Sbjct: 270 PMVDFETGAVTGTAQSELAAYYAGLLGQVGRKAQGDDYLASFTYLQATFGVIPES--IDV 327
Query: 377 LMLHPTEKYYPLRPELAESTFYLYQATKDPWYLEVGESIVNSLNSYTKVDGGFASIRDVT 436
P K+ LRPE ++ L+ +DP Y + + + ++ G+ +++D+T
Sbjct: 328 TTGQPRRKHTGLRPEYPDACLNLWLIDRDPRYRRLAAIHYREMKATSRAAFGYTALKDIT 387
Query: 437 T--MQLEDHQHSFFLAETCKYLYLLFDDSFLVD 467
T M +D+ ++ +E KY YLLF D+ +D
Sbjct: 388 TRPMTQDDNCPGYWWSEQMKYYYLLFSDTPRID 420
>pdb|1DL2|A Chain A, Crystal Structure Of Class I Alpha-1,2-Mannosidase From
Saccharomyces Cerevisiae At 1.54 Angstrom Resolution
Length = 511
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 131/518 (25%), Positives = 229/518 (44%), Gaps = 102/518 (19%)
Query: 40 MKKKVHDMFYHAYENYLTHAFPHDELKPLSKSFTDSLSELGNLKLEHLPQHYNGSALTLI 99
M+ ++ MF ++ +Y H + +D P+ + ++P+ ++
Sbjct: 5 MRDRIESMFLESWRDYSKHGWGYDVYGPIEHT------------SHNMPRGNQPLGWIIV 52
Query: 100 ESMSSLVIMGNNT---------EFERAVLWLSENLNFDVDARINLFECNIRVLGGLVSAH 150
+S+ +L++M N++ E +R+ W+++ L+FD+DA +N+FE IR+LGGL+SA+
Sbjct: 53 DSVDTLMLMYNSSTLYKSEFEAEIQRSEHWINDVLDFDIDAEVNVFETTIRMLGGLLSAY 112
Query: 151 ILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAF-DTPTGLPYAWINLKYG-VMENETN- 207
L+ +++ K L A DLG R AF T TG+PY+ INL G ++N +
Sbjct: 113 HLSD-----VLEVGNKTVYLNKAIDLGDRLALAFLSTQTGIPYSSINLHSGQAVKNHADG 167
Query: 208 -ETSTSGCGSLILEMGALSRLTGDPIYESAALRALRRLWSMRSSLNLLGTTLDV----TT 262
+ST+ +L +E L+ LTG+ Y R L+ LN + + T
Sbjct: 168 GASSTAEFTTLQMEFKYLAYLTGNRTYWELVERVYEPLYKNNDLLNTYDGLVPIYTFPDT 227
Query: 263 GEWIEYSSGIGAGVDSFYEYLFKAHILFGKEDFWRMFHSAYLAVQKYFRHGPWYHEADMR 322
G++ + G+ DSFYEYL K ++L + ++ ++ + ++K+ +
Sbjct: 228 GKFGASTIRFGSRGDSFYEYLLKQYLLTHETLYYDLYRKSMEGMKKHLL---------AQ 278
Query: 323 NGKATYWQLTSLQAFWPG--------LQVLVGDIAAANSSHREFVHVWKK---------- 364
+ ++ W + + G L +G + A+ S+ +H ++
Sbjct: 279 SKPSSLWYIGEREQGLHGQLSPKMDHLVCFMGGLLASGSTEGLSIHEARRRPFFSKSDWD 338
Query: 365 -----------------FGVLPE---------------RYLLDHLMLHPTEKYYPLRPEL 392
G+ PE R + + P +++ RPE
Sbjct: 339 LAKGITDTCYQMYKQSSSGLAPEIVVFNDGNIKQDGWWRSSVGDFFVKPLDRHNLQRPET 398
Query: 393 AESTFYLYQATKDPWYLEVGESIVNSLNSYTKVDGG------FASIRDVTTM--QLEDHQ 444
ES ++Y + D Y E G I S T VD F S+ D T+ + ++
Sbjct: 399 VESIMFMYHLSHDHKYREWGAEIATSFFENTCVDCNDPKLRRFTSLSDCITLPTKKSNNM 458
Query: 445 HSFFLAETCKYLYLLFDDSFLVDRNYVFTTEGHPLPVL 482
SF+LAET KYLY+LF D F + + VF TE HP PVL
Sbjct: 459 ESFWLAETLKYLYILFLDEFDLTK-VVFNTEAHPFPVL 495
>pdb|1G6I|A Chain A, Crystal Structure Of The Yeast Alpha-1,2-Mannosidase With
Bound 1- Deoxymannojirimycin At 1.59 A Resolution
Length = 545
Score = 138 bits (348), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 130/517 (25%), Positives = 228/517 (44%), Gaps = 102/517 (19%)
Query: 41 KKKVHDMFYHAYENYLTHAFPHDELKPLSKSFTDSLSELGNLKLEHLPQHYNGSALTLIE 100
+ ++ MF ++ +Y H + +D P+ + ++P+ +++
Sbjct: 40 RDRIESMFLESWRDYSKHGWGYDVYGPIEHT------------SHNMPRGNQPLGWIIVD 87
Query: 101 SMSSLVIMGNNT---------EFERAVLWLSENLNFDVDARINLFECNIRVLGGLVSAHI 151
S+ +L++M N++ E +R+ W+++ L+FD+DA +N+FE IR+LGGL+SA+
Sbjct: 88 SVDTLMLMYNSSTLYKSEFEAEIQRSEHWINDVLDFDIDAEVNVFETTIRMLGGLLSAYH 147
Query: 152 LATDSANRLVQGSYKNQLLTLAEDLGRRFLPAF-DTPTGLPYAWINLKYG-VMENETN-- 207
L+ +++ K L A DLG R AF T TG+PY+ INL G ++N +
Sbjct: 148 LSD-----VLEVGNKTVYLNKAIDLGDRLALAFLSTQTGIPYSSINLHSGQAVKNHADGG 202
Query: 208 ETSTSGCGSLILEMGALSRLTGDPIYESAALRALRRLWSMRSSLNLLGTTLDV----TTG 263
+ST+ +L +E L+ LTG+ Y R L+ LN + + TG
Sbjct: 203 ASSTAEFTTLQMEFKYLAYLTGNRTYWELVERVYEPLYKNNDLLNTYDGLVPIYTFPDTG 262
Query: 264 EWIEYSSGIGAGVDSFYEYLFKAHILFGKEDFWRMFHSAYLAVQKYFRHGPWYHEADMRN 323
++ + G+ DSFYEYL K ++L + ++ ++ + ++K+ ++
Sbjct: 263 KFGASTIRFGSRGDSFYEYLLKQYLLTHETLYYDLYRKSMEGMKKHLL---------AQS 313
Query: 324 GKATYWQLTSLQAFWPG--------LQVLVGDIAAANSSHREFVHVWKK----------- 364
++ W + + G L +G + A+ S+ +H ++
Sbjct: 314 KPSSLWYIGEREQGLQGQLSPKMDHLVCFMGGLLASGSTEGLSIHEARRRPFFSKSDWDL 373
Query: 365 ----------------FGVLPE---------------RYLLDHLMLHPTEKYYPLRPELA 393
G+ PE R + + P +++ RPE
Sbjct: 374 AKGITDTCYQMYKQSSSGLAPEIVVFNDGNIKQDGWWRSSVGDFFVKPLDRHNLQRPETV 433
Query: 394 ESTFYLYQATKDPWYLEVGESIVNSLNSYTKVDGG------FASIRDVTTM--QLEDHQH 445
ES ++Y + D Y E G I S T VD F S+ D T+ + ++
Sbjct: 434 ESIMFMYHLSHDHKYREWGAEIATSFFENTCVDCNDPKLRRFTSLSDCITLPTKKSNNME 493
Query: 446 SFFLAETCKYLYLLFDDSFLVDRNYVFTTEGHPLPVL 482
SF+LAET KYLY+LF D F + + VF TE HP PVL
Sbjct: 494 SFWLAETLKYLYILFLDEFDLTK-VVFNTEAHPFPVL 529
>pdb|1KKT|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KKT|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|A Chain A, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|B Chain B, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
Length = 511
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 145/532 (27%), Positives = 233/532 (43%), Gaps = 79/532 (14%)
Query: 4 RQVVKWILVFLVISPSLFPVSVSEVDSSYWSAKKRHMKKK--VHDMFYHAYENYLTHAFP 61
R V + L L + S E ++ S K + K V + F HA+ Y+ +AFP
Sbjct: 2 RLPVSFPLTVLSLLGSTIAHPYGETEAVLRSEPKSNQAKADAVKEAFQHAWNGYMKYAFP 61
Query: 62 HDELKPLSKSFTDSLSELGNLKLEHLPQHYNGSALTLIESMSSLVIMGNNTEFERAVLWL 121
HDEL P+S DS NG + ++++S+ VIMG + A+L
Sbjct: 62 HDELTPVSNGHADSR---------------NGWGASAVDALSTAVIMG-KADVVNAILEH 105
Query: 122 SENLNFD-VDARINLFECNIRVLGGLVSAHILATDSANRLVQG-SYKNQLLTLAEDLGRR 179
+++F ++LFE IR L G++S + L A LV + LL + +L
Sbjct: 106 VADIDFSKTSDTVSLFETTIRYLAGMLSGYDLLQGPAKNLVDNQDLIDGLLDQSRNLADV 165
Query: 180 FLPAFDTPTGLPYAWINLKYGVMENETNETSTSG---CGSLILEMGALSRLTGDPIYESA 236
AFDTP+G+PY IN + + + +T+G G+L+LE LS LTGD Y
Sbjct: 166 LKFAFDTPSGVPYNNIN----ITSHGNDGATTNGLAVTGTLVLEWTRLSDLTGDEEYAKL 221
Query: 237 ALRALRRLWSMRSSLN-----LLGTTLDVTTGEWIEYSSGIGAGVDSFYEYLFKAHILFG 291
+ +A L + S + L+G+++++ G++ + G DSFYEYL K ++
Sbjct: 222 SQKAESYLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWNGGDDSFYEYLIKMYVYDP 281
Query: 292 K-----EDFWRMFHSAYLAVQKYFRHGP-------WYHEADMRNGKATYWQLTSL----- 334
K +D W + A + K+ + P + RN + LT
Sbjct: 282 KRFETYKDRWVL---AAESTIKHLKSHPKSRPDLTFLSSYSNRNYDLSSQHLTCFDGGSF 338
Query: 335 ---------QAFWP-GLQVLVGDIAAANSSHREFVHVWKKFGVLPERYLLDHLMLHPTEK 384
Q F GL+++ G A NS+ + +G P++ D +
Sbjct: 339 LLGGTVLDRQDFIDFGLELVDGCEATYNSTLTKIGP--DSWGWDPKKVPSDQKEFYEKAG 396
Query: 385 Y------YPLRPELAESTFYLYQATKDPWYLEVGESIVNSLNSYTKVDGGFASIRDVTTM 438
+ Y LRPE+ ES +Y ++ T Y + + ++NS + D GFA++ DV
Sbjct: 397 FYISSGSYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFVAINSTCRTDSGFAAVSDVNKA 456
Query: 439 Q---LEDHQHSFFLAETCKYLYLLF--DDSFLVDRN----YVFTTEGHPLPV 481
D+Q SF AE KY YL D ++ V + +V+ TE HP+ V
Sbjct: 457 NGGSKYDNQESFLFAEVMKYSYLAHSEDAAWQVQKGGKNTFVYNTEAHPISV 508
>pdb|2RI8|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI8|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI9|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
pdb|2RI9|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
Length = 475
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 136/490 (27%), Positives = 219/490 (44%), Gaps = 77/490 (15%)
Query: 44 VHDMFYHAYENYLTHAFPHDELKPLSKSFTDSLSELGNLKLEHLPQHYNGSALTLIESMS 103
V + F HA+ Y+ +AFPHDEL P+S DS NG + ++++S
Sbjct: 9 VKEAFQHAWNGYMKYAFPHDELTPVSNGHADSR---------------NGWGASAVDALS 53
Query: 104 SLVIMGNNTEFERAVLWLSENLNFD-VDARINLFECNIRVLGGLVSAHILATDSANRLVQ 162
+ VIMG + A+L +++F ++LFE IR L G++S + L A LV
Sbjct: 54 TAVIMG-KADVVNAILEHVADIDFSKTSDTVSLFETTIRYLAGMLSGYDLLQGPAKNLVD 112
Query: 163 G-SYKNQLLTLAEDLGRRFLPAFDTPTGLPYAWINLKYGVMENETNETSTSG---CGSLI 218
+ LL + +L AFDTP+G+PY IN + + + +T+G G+L+
Sbjct: 113 NQDLIDGLLDQSRNLADVLKFAFDTPSGVPYNNIN----ITSHGNDGATTNGLAVTGTLV 168
Query: 219 LEMGALSRLTGDPIYESAALRALRRLWSMRSSLN-----LLGTTLDVTTGEWIEYSSGIG 273
LE LS LTGD Y + +A L + S + L+G+++++ G++ +
Sbjct: 169 LEWTRLSDLTGDEEYAKLSQKAESYLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWN 228
Query: 274 AGVDSFYEYLFKAHILFGK-----EDFWRMFHSAYLAVQKYFRHGP-------WYHEADM 321
G DSFYEYL K ++ K +D W + A + K+ + P +
Sbjct: 229 GGDDSFYEYLIKMYVYDPKRFETYKDRWVL---AAESTIKHLKSHPKSRPDLTFLSSYSN 285
Query: 322 RNGKATYWQLTSL--------------QAFWP-GLQVLVGDIAAANSSHREFVHVWKKFG 366
RN + LT Q F GL+++ G A NS+ + +G
Sbjct: 286 RNYDLSSQHLTCFDGGSFLLGGTVLDRQDFIDFGLELVDGCEATYNSTLTKIGP--DSWG 343
Query: 367 VLPERYLLDHLMLHPTEKY------YPLRPELAESTFYLYQATKDPWYLEVGESIVNSLN 420
P++ D + + Y LRPE+ ES +Y ++ T Y + + ++N
Sbjct: 344 WDPKKVPSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFVAIN 403
Query: 421 SYTKVDGGFASIRDVTTMQ---LEDHQHSFFLAETCKYLYLLF--DDSFLVDRN----YV 471
S + D GFA++ DV D+Q SF AE KY YL D ++ V + +V
Sbjct: 404 STCRTDSGFAAVSDVNKANGGSKYDNQESFLFAEVMKYSYLAHSEDAAWQVQKGGKNTFV 463
Query: 472 FTTEGHPLPV 481
+ TE HP+ V
Sbjct: 464 YNTEAHPISV 473
>pdb|1HCU|A Chain A, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|B Chain B, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|C Chain C, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|D Chain D, Alpha-1,2-Mannosidase From Trichoderma Reesei
Length = 503
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 133/495 (26%), Positives = 206/495 (41%), Gaps = 72/495 (14%)
Query: 44 VHDMFYHAYENYLTHAFPHDELKPLSKSFTDSLSELGNLKLEHLPQHYNGSALTLIESMS 103
V F ++ Y AFPHD+L P+S SF D NG + I+ +
Sbjct: 19 VKAAFQTSWNAYHHFAFPHDDLHPVSNSFDD---------------ERNGWGSSAIDGLD 63
Query: 104 SLVIMGNNTEFERAVLWLSENLNFDVDARIN----LFECNIRVLGGLVSAHILATDSANR 159
+ ++MG+ + +L +NF A N +FE NIR LGGL+SA+ L +
Sbjct: 64 TAILMGD-ADIVNTILQYVPQINFTTTAVANQGSSVFETNIRYLGGLLSAYDLLRGPFSS 122
Query: 160 LVQG-SYKNQLLTLAEDLGRRFLPAFDTPTGLPYAWINLKYGVMENETNETSTSGCGSLI 218
L + N LL A+ L AF TP+G+P + V + + + + GSL+
Sbjct: 123 LATNQTLVNSLLRQAQTLANGLKVAFTTPSGVPDPTVFFNPTVRRSGASSNNVAEIGSLV 182
Query: 219 LEMGALSRLTGDPIYESAALRALRRLWSMRSS----LNLLGTTLDVTTGEWIEYSSGIGA 274
LE LS LTG+P Y A + L + + S L+GT + + G + + S
Sbjct: 183 LEWTRLSDLTGNPQYAQLAQKGESYLLNPKGSPEAWPGLIGTFVSTSNGTFQDSSGSWSG 242
Query: 275 GVDSFYEYLFKAH----ILFGK-EDFWRMFHSA---YLAVQKYFRHGPWYHEADMRNGKA 326
+DSFYEYL K + + F +D W + + +L R + + NG++
Sbjct: 243 LMDSFYEYLIKMYLYDPVAFAHYKDRWVLGADSTIGHLGSHPSTRKDLTFLSS--YNGQS 300
Query: 327 TYWQLTSLQAFWPGLQVLVG---------DIAAANSSHREFVHVWKKFGVLPERYL-LDH 376
T L +F G +L G D +S + G+ PE + +D
Sbjct: 301 TSPNSGHLASFGGGNFILGGILLNEQKYIDFGIKLASSYFGTYTQTASGIGPEGFAWVDS 360
Query: 377 LM------------------LHPTEKYYPLRPELAESTFYLYQATKDPWYLEVGESIVNS 418
+ T YY LRPE ES +Y Y+ T D + ++ +++
Sbjct: 361 VTGAGGSPPSSQSGFYSSAGFWVTAPYYILRPETLESLYYAYRVTGDSKWQDLAWEALSA 420
Query: 419 LNSYTKVDGGFASIRDVTTMQ---LEDHQHSFFLAETCKYLYLLFDDSFLVD------RN 469
+ + ++SI DVT D SF+ AE KY YL+F + V
Sbjct: 421 IEDACRAGSAYSSINDVTQANGGGASDDMESFWFAEALKYAYLIFAEESDVQVQATGGNK 480
Query: 470 YVFTTEGHPLPVLSS 484
+VF TE HP + SS
Sbjct: 481 FVFNTEAHPFSIRSS 495
>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4Q|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4R|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4S|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1S64|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1TNB|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNO|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNU|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNY|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNZ|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
Length = 377
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 442 DHQHSFFLAETCKYLYLLFDDSFLVDRNYVFTTEGHPLPVLSSWHDRLPEA 492
D +SF++ T K L + +F +RNY+ +T+ + + W D P+A
Sbjct: 269 DTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDA 319
>pdb|1SEF|A Chain A, Crystal Structure Of Cupin Domain Protein Ef2996 From
Enterococcus Faecalis
Length = 274
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 425 VDGGFASIRDVTTMQLEDHQHSFFLAETCKYLYLLFD---DSFLVDRNYVFTTEGHPLPV 481
+DG T +LE +++F E YL + + FL + Y P V
Sbjct: 91 IDGRLRVSDGQETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKRYQPLAGHQPYKV 150
Query: 482 LSSWHDRLPEAYIPSN----WTFLPSE 504
+ S HD+ PE Y W+ LP E
Sbjct: 151 VGSIHDQQPEEYEGMTDVLLWSLLPKE 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,925,710
Number of Sequences: 62578
Number of extensions: 760831
Number of successful extensions: 1695
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1622
Number of HSP's gapped (non-prelim): 24
length of query: 577
length of database: 14,973,337
effective HSP length: 104
effective length of query: 473
effective length of database: 8,465,225
effective search space: 4004051425
effective search space used: 4004051425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)