Query 008122
Match_columns 577
No_of_seqs 177 out of 985
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 19:44:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2429 Glycosyl hydrolase, fa 100.0 6E-145 1E-149 1153.7 35.0 556 8-576 4-575 (622)
2 PTZ00470 glycoside hydrolase f 100.0 6E-137 1E-141 1124.2 35.2 425 31-483 63-520 (522)
3 KOG2431 1, 2-alpha-mannosidase 100.0 2E-133 5E-138 1036.1 30.1 421 36-483 90-544 (546)
4 PF01532 Glyco_hydro_47: Glyco 100.0 2E-130 5E-135 1065.6 23.4 409 47-481 1-452 (452)
5 KOG2204 Mannosyl-oligosacchari 100.0 2E-120 5E-125 966.5 26.3 427 31-482 166-625 (625)
6 KOG2430 Glycosyl hydrolase, fa 100.0 2E-110 5E-115 848.7 22.9 444 33-483 2-458 (587)
7 cd00249 AGE AGE domain; N-acyl 97.9 0.002 4.3E-08 68.5 21.4 264 139-426 55-341 (384)
8 PF07944 DUF1680: Putative gly 97.7 0.00067 1.5E-08 76.2 14.8 139 140-309 128-269 (520)
9 KOG2204 Mannosyl-oligosacchari 97.6 0.0016 3.5E-08 72.2 16.2 347 31-437 8-380 (625)
10 COG1331 Highly conserved prote 97.3 0.00059 1.3E-08 77.7 8.0 174 35-246 379-569 (667)
11 PF07470 Glyco_hydro_88: Glyco 96.7 0.02 4.3E-07 60.5 12.4 126 142-310 30-160 (336)
12 PF07944 DUF1680: Putative gly 96.5 0.043 9.2E-07 61.9 14.6 234 177-432 25-280 (520)
13 cd00249 AGE AGE domain; N-acyl 96.4 0.018 3.8E-07 61.3 10.2 240 42-311 10-276 (384)
14 PF03663 Glyco_hydro_76: Glyco 96.2 0.0078 1.7E-07 64.9 5.9 150 144-312 95-259 (370)
15 PF07221 GlcNAc_2-epim: N-acyl 95.0 0.28 6E-06 51.9 12.4 269 140-437 24-327 (346)
16 PTZ00470 glycoside hydrolase f 95.0 0.31 6.6E-06 55.2 13.2 171 111-294 309-500 (522)
17 cd04791 LanC_SerThrkinase Lant 94.9 0.41 8.8E-06 49.6 13.1 176 105-308 53-231 (321)
18 cd04792 LanM-like LanM-like pr 92.7 5.7 0.00012 47.2 18.7 176 219-425 594-785 (825)
19 cd04791 LanC_SerThrkinase Lant 92.4 0.73 1.6E-05 47.7 9.6 128 144-311 146-274 (321)
20 PF07221 GlcNAc_2-epim: N-acyl 92.2 2.7 5.9E-05 44.4 13.8 234 219-461 28-289 (346)
21 PF07470 Glyco_hydro_88: Glyco 90.1 1 2.2E-05 47.5 8.0 92 147-258 77-172 (336)
22 cd04794 euk_LANCL eukaryotic L 90.0 14 0.00029 39.3 16.4 256 115-422 29-305 (343)
23 COG2942 N-acyl-D-glucosamine 2 88.7 1.4 3E-05 48.0 7.7 144 141-312 178-341 (388)
24 PF01532 Glyco_hydro_47: Glyco 88.5 1.3 2.9E-05 49.2 7.8 125 111-247 233-390 (452)
25 COG3533 Uncharacterized protei 88.4 0.84 1.8E-05 51.1 6.0 73 142-242 136-208 (589)
26 cd04434 LanC_like LanC-like pr 86.0 20 0.00043 36.9 14.3 182 108-308 66-253 (343)
27 PF06917 Pectate_lyase_2: Peri 85.6 1.1 2.3E-05 50.2 4.8 64 221-284 78-150 (557)
28 PF03663 Glyco_hydro_76: Glyco 84.7 2 4.4E-05 46.4 6.5 130 168-308 175-318 (370)
29 PF06662 C5-epim_C: D-glucuron 83.8 4.1 9E-05 40.4 7.6 96 208-310 27-131 (189)
30 COG1331 Highly conserved prote 80.1 16 0.00034 42.7 11.5 157 139-314 413-575 (667)
31 cd04434 LanC_like LanC-like pr 78.0 26 0.00057 35.9 11.7 113 168-299 179-291 (343)
32 cd04792 LanM-like LanM-like pr 73.8 38 0.00082 40.4 13.0 149 133-308 583-736 (825)
33 KOG1748 Acyl carrier protein/N 63.0 4.1 8.9E-05 38.1 1.5 63 39-125 49-127 (131)
34 TIGR02474 pec_lyase pectate ly 62.0 19 0.00042 38.1 6.4 43 217-259 46-91 (290)
35 cd04793 LanC LanC is the cycla 60.1 46 0.001 35.7 9.2 80 219-311 251-330 (382)
36 PF00299 Squash: Squash family 58.6 5.3 0.00012 27.7 1.1 22 545-572 8-29 (29)
37 COG4225 Predicted unsaturated 57.1 72 0.0016 34.6 9.6 233 143-423 42-304 (357)
38 cd00150 PlantTI Plant trypsin 53.3 6.6 0.00014 26.9 0.8 22 545-572 6-27 (27)
39 cd04794 euk_LANCL eukaryotic L 52.4 1.6E+02 0.0035 31.1 11.6 71 218-304 230-300 (343)
40 COG4225 Predicted unsaturated 51.2 1.4E+02 0.0031 32.4 10.7 190 109-320 53-256 (357)
41 PF09492 Pec_lyase: Pectic aci 45.2 56 0.0012 34.7 6.6 45 218-262 42-89 (289)
42 PF05147 LANC_like: Lanthionin 41.5 28 0.0006 36.2 3.7 129 168-308 126-262 (355)
43 COG4403 LcnDR2 Lantibiotic mod 40.2 1.6E+02 0.0034 35.9 9.8 115 166-297 595-719 (963)
44 KOG3760 Heparan sulfate-glucur 38.7 45 0.00098 36.8 4.8 97 145-249 492-591 (594)
45 PRK11097 endo-1,4-D-glucanase; 38.1 1.4E+02 0.0031 32.8 8.5 148 106-263 65-229 (376)
46 PF01270 Glyco_hydro_8: Glycos 36.2 2.6E+02 0.0056 30.0 10.1 141 105-261 65-225 (342)
47 PF12060 DUF3541: Domain of un 34.2 34 0.00074 34.6 2.8 28 383-419 29-56 (227)
48 smart00286 PTI Plant trypsin i 33.5 22 0.00047 24.8 0.9 22 545-572 8-29 (29)
49 cd04793 LanC LanC is the cycla 29.2 81 0.0018 33.8 5.0 67 168-249 264-330 (382)
50 PF06662 C5-epim_C: D-glucuron 28.4 66 0.0014 32.0 3.7 40 391-431 34-73 (189)
51 PF05426 Alginate_lyase: Algin 28.1 54 0.0012 33.3 3.2 30 396-425 65-94 (272)
52 COG3533 Uncharacterized protei 27.5 60 0.0013 37.0 3.6 32 385-416 176-207 (589)
53 PF05227 CHASE3: CHASE3 domain 25.5 95 0.0021 27.7 4.0 30 281-310 26-55 (138)
54 KOG2787 Lanthionine synthetase 24.4 1.2E+02 0.0027 32.8 5.0 106 111-247 244-361 (403)
55 TIGR01561 gde_arch glycogen de 24.1 1.2E+02 0.0025 35.3 5.2 81 338-424 302-386 (575)
56 PF11329 DUF3131: Protein of u 22.3 6.2E+02 0.013 27.9 10.0 132 141-292 38-180 (367)
No 1
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.3e-145 Score=1153.71 Aligned_cols=556 Identities=47% Similarity=0.757 Sum_probs=505.4
Q ss_pred HHHHHHHHhcCCCCcccccCcCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCcCCCCCCCcccccccccCC
Q 008122 8 KWILVFLVISPSLFPVSVSEVDSSYWSAKKRHMKKKVHDMFYHAYENYLTHAFPHDELKPLSKSFTDSLSELGNLKLEHL 87 (577)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Vk~~f~hAw~~Y~~~Awg~DEL~P~S~~~~d~~~~~G~~~~~~~ 87 (577)
.|++..++++...+... + ++...+..+++.|++||+||+|||+|||+||||+|||+|+|+.++++ +.+|+
T Consensus 4 ~~l~~a~l~~l~~~~~~--~-~~~~~~~~~~~~Re~vr~MFyhayDnYm~hAFP~DEL~PltC~g~~~-------~~~D~ 73 (622)
T KOG2429|consen 4 LWLLCALLISLTFFGVE--S-SPGSIASKKKQYREEVREMFYHAYDNYMEHAFPYDELKPLTCVGRGP-------GVNDT 73 (622)
T ss_pred ceehHHhhhhccccccc--C-CcccccccHHHHHHHHHHHHHHhhhhHhhccCCccccCcceecCCCC-------Ccccc
Confidence 35555555666655443 2 22455666799999999999999999999999999999988776554 34578
Q ss_pred CCCCCCCceeeeeccchhhhccCHHHHHHHHHHHHHhCCCcccccccccchhhhhcccchhhhhcc-ccchhhhccccch
Q 008122 88 PQHYNGSALTLIESMSSLVIMGNNTEFERAVLWLSENLNFDVDARINLFECNIRVLGGLVSAHILA-TDSANRLVQGSYK 166 (577)
Q Consensus 88 ~~~~~G~glTLVDSLDTL~IMGl~~EF~~A~~~v~~~l~F~~d~~VsvFETtIR~LGGLLSAY~Ls-~d~~~~~~~~~y~ 166 (577)
+|+| ++|||||||||.|||+.+||++||+||.++++||+|.+||||||||||||||||||.|+ .+.......+.|+
T Consensus 74 ~G~y---sLtLIDaLdTLailGn~~eF~raV~lv~~~~~Fd~d~~VqVFEttIRVlGGLLSAHllA~~~~~~~~~~~~y~ 150 (622)
T KOG2429|consen 74 LGSY---SLTLIDALDTLAILGNRTEFQRAVRLVIETVSFDIDSTVQVFETTIRVLGGLLSAHLLAKKDPVGVFLGPDYD 150 (622)
T ss_pred cccc---chhhHHHhhHHHHhCChHHHHHHHHHHHhhCCcccCCeeEEEEEehhhhhhHHHHHHhhccCccCccccCCCC
Confidence 8888 99999999999999999999999999999999999999999999999999999999999 4554445677899
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCccceeeccCCCCCCCCCCccccccccchhhhhHHHHhhCCchHHHHHHHHHHHHHh
Q 008122 167 NQLLTLAEDLGRRFLPAFDTPTGLPYAWINLKYGVMENETNETSTSGCGSLILEMGALSRLTGDPIYESAALRALRRLWS 246 (577)
Q Consensus 167 ~~LL~kA~dLadrLlpAFdTptGiP~~~vNl~~g~~~~~~~~t~lAe~GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L~~ 246 (577)
+.||.+|+|||+||||||+|||||||++|||++|+.++++++||+|++||+.|||+.||+|||||+|+++|++|.++||+
T Consensus 151 g~LLrLA~dlA~RLLPAF~T~TGiPy~~vNLk~GV~~~Et~~tctAg~gslllEFg~LSrLTGD~~fE~vA~~A~~~lW~ 230 (622)
T KOG2429|consen 151 GELLRLAEDLARRLLPAFETPTGIPYGRVNLKYGVDKGETTETCTAGAGSLLLEFGTLSRLTGDPKFEKVARRALDALWS 230 (622)
T ss_pred chHHHHHHHHHHhhcccccCCCCCCcceeehhcCCCCCCCcceecccccceeeehhhhHHhhCCcHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcceeeecCCCceecccccccCCCchhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCccccccCCCcc
Q 008122 247 MRSSLNLLGTTLDVTTGEWIEYSSGIGAGVDSFYEYLFKAHILFGKEDFWRMFHSAYLAVQKYFRHGPWYHEADMRNGKA 326 (577)
Q Consensus 247 ~~~~~gL~~~~id~~tG~~~~~~~~~Ga~~DSyYEYLlK~~iL~g~~~~~~m~~~a~~~i~k~l~~~~~~~~~~~~~g~~ 326 (577)
.|+.+||+|++||+.||+|+...+|||||+|||||||+|.|||+|++++++||++|+.+|++|+++++||.+++|.+|.+
T Consensus 231 ~RS~igLlGn~idV~tG~W~~~~sGIGAgiDSfyEYllK~yILfgd~e~lemf~ea~~ai~~y~r~~~wY~~V~m~~G~v 310 (622)
T KOG2429|consen 231 LRSGIGLLGNHIDVQTGEWTAPDSGIGAGIDSFYEYLLKGYILFGDPELLEMFNEAYEAIQKYTRKGPWYVNVNMDSGSV 310 (622)
T ss_pred hcCCCCcccceeeccccceeccccccccchHHHHHHHHHHheecCCHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccccccchhhccccccchhhHHHHHHHHHHhCCCCcEEEccCccccCCCCcCCCChhhHHHHHHHHHhcCCh
Q 008122 327 TYWQLTSLQAFWPGLQVLVGDIAAANSSHREFVHVWKKFGVLPERYLLDHLMLHPTEKYYPLRPELAESTFYLYQATKDP 406 (577)
Q Consensus 327 ~~~~~~hL~cF~pG~~~L~g~~~~a~~~~~~~~~~~~~~Gl~PE~~~~~~~~~~~~~~~Y~LRPE~iES~fyLyR~TgD~ 406 (577)
..+.+++|++||||+|+|.|++++|..+|..|+.||+++|..||+|++..+.+++..+.||||||+|||+|||||+|+||
T Consensus 311 ~~p~~dSLqAfwpGlqvLaGDvd~A~~~h~~y~~vwkkyG~lPEryN~~~~~~~~~~~~YPLRPElvEStyyLYrATkdp 390 (622)
T KOG2429|consen 311 SLPWFDSLQAFWPGLQVLAGDVDDAIRTHLMYFSVWKKYGFLPERYNLATQEPPPKREGYPLRPELVESTYYLYRATKDP 390 (622)
T ss_pred ehHHHhhHHhhccchhhhhcchHHHHHHHHHHHHHHHHcCCCcccccccCCCCCCCcccCCCCHHHHHHHHHHHHhcCCc
Confidence 88889999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccCCCccccccccccccCCcchhHHHHHHhHHHHHhccCC-CCC---CCCeEecCCCcccccc
Q 008122 407 WYLEVGESIVNSLNSYTKVDGGFASIRDVTTMQLEDHQHSFFLAETCKYLYLLFDDS-FLV---DRNYVFTTEGHPLPVL 482 (577)
Q Consensus 407 ~Yre~gW~if~aiek~~r~~~Gya~i~dV~~~~~~D~meSFflAETLKYLYLLFsd~-~~~---ld~~VFnTEaHPl~i~ 482 (577)
.|++.|.+|.++||+++|++||||+|+||.+++++|+|||||||||+|||||||+|+ ++. -+.++|+|||||++|.
T Consensus 391 ~yL~vG~~~l~sLe~~~k~~CGfAti~nV~~~~ledrMESFFLaET~KYLYLLFD~~n~ih~~g~~~~ifsTEgh~~~v~ 470 (622)
T KOG2429|consen 391 FYLHVGEDMLKSLEKYTKVKCGFATIRNVITHSLEDRMESFFLAETLKYLYLLFDDDNPIHNSGSDSVIFSTEGHLFPVT 470 (622)
T ss_pred HHHHHHHHHHHHHHHhccCCccceeeeehhhcchHHHHHHHHHHHHHhHHheeecCCchhhccCCceeEEeeCCcceeec
Confidence 999999999999999999999999999999999999999999999999999999985 453 3458999999999997
Q ss_pred cc---cccCCCCCCCCCCCccCcchhHHhhhhhhccccCCCCcCCCCCCCcccccccCCCCCCCC-----CcccCCCCcc
Q 008122 483 SS---WHDRLPEAYIPSNWTFLPSEKQARRASAMTLQVCPAMSLDCGHGCQQVKSACHIPDARSD-----HRCFGDEECG 554 (577)
Q Consensus 483 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 554 (577)
.. |+...+..+....|......+......+.+.+.|+......+|-.++.+.+||....+.+ +.|..+.+|+
T Consensus 471 ~~~~~~~t~a~~~d~~~~~c~s~~~~~e~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 550 (622)
T KOG2429|consen 471 QAGYIFNTEAHPIDPGGLHCPSISTKKEQEVTGEDLQNGRPSAKYSRHKEGPKVIAIDSLLEDCNLPGTCFIPKEHKEGE 550 (622)
T ss_pred ccccccCCCCCcCCccccccchhhhhhHHhhhhhhhccCChhhhcccccccccccccccccCCCCcCcccccccccchhh
Confidence 63 444333333334444433455556667888999999999999999999999999999988 8899999999
Q ss_pred ccccc---cccccccccceeeeccc
Q 008122 555 VDATT---CRRRTCSMAGYCGLWLF 576 (577)
Q Consensus 555 ~~~~~---~~~~~~~~~~~~~~~~~ 576 (577)
....+ |+-|+||.-.+|+.|..
T Consensus 551 ~~~~~~~~~~~~~~s~~~~~~~~~~ 575 (622)
T KOG2429|consen 551 ERKYSLEKEVLRTCSSLVMPSDIEN 575 (622)
T ss_pred hhcccchhccccccCcceehhhhhH
Confidence 99999 99999999999998853
No 2
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=100.00 E-value=6.5e-137 Score=1124.15 Aligned_cols=425 Identities=33% Similarity=0.510 Sum_probs=379.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCcCCCCCCCcccccccccCCCCCCCCCceeeeeccchhhhccC
Q 008122 31 SYWSAKKRHMKKKVHDMFYHAYENYLTHAFPHDELKPLSKSFTDSLSELGNLKLEHLPQHYNGSALTLIESMSSLVIMGN 110 (577)
Q Consensus 31 ~~~~~~~~~~r~~Vk~~f~hAw~~Y~~~Awg~DEL~P~S~~~~d~~~~~G~~~~~~~~~~~~G~glTLVDSLDTL~IMGl 110 (577)
.++.+.+.+||++||+||+|||++|++||||||||+|+|+++.|+ +|||+|||||||||||||+
T Consensus 63 ~~~~~~~~~r~~~Vk~~F~haW~~Y~~~Awg~DEL~P~S~~~~~~----------------~g~g~TlVDSLDTL~IMgl 126 (522)
T PTZ00470 63 YQNEKLNIKRRESVREAMKHAWEGYKEYAWGHDELRPLTKRHHEW----------------FGLGLTIIDSLDTLKIMGL 126 (522)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHhCcCccceecCcCCccCC----------------CcchhHHHHHHHHHHHcCC
Confidence 566677889999999999999999999999999999999887653 6899999999999999999
Q ss_pred HHHHHHHHHHHHHhCCC--cccccccccchhhhhcccchhhhhccccchhhhccccchHHHHHHHHHHHhhhccCCCCCC
Q 008122 111 NTEFERAVLWLSENLNF--DVDARINLFECNIRVLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAFDTPT 188 (577)
Q Consensus 111 ~~EF~~A~~~v~~~l~F--~~d~~VsvFETtIR~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpAFdTpt 188 (577)
++||++|++||.++++| ++++.|||||||||+||||||||+||+|+ +||+||+||||+|+|||||||
T Consensus 127 ~~Ef~~a~~~V~~~l~f~~~~~~~vsvFEttIR~LGGLLSAy~Ls~d~-----------~lL~kA~dLgd~Ll~AFdTpt 195 (522)
T PTZ00470 127 KKEYKEGRDWVANNLKQSKDTGLGVSVFETTIRVLGGLLSAYDLTGDE-----------MYLEKAREIADRLLPAFNEDT 195 (522)
T ss_pred hHHHHHHHHHHHhhCCCCCCCCCeeeeeeeehhhHhHHHHHHHHcCCH-----------HHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999 66899999999999999999999999998 999999999999999999999
Q ss_pred CCccceeeccCCCCCCC---CCCccccccccchhhhhHHHHhhCCchHHHHHHHHHHHHHhccCC-CCCcceeeecCCCc
Q 008122 189 GLPYAWINLKYGVMENE---TNETSTSGCGSLILEMGALSRLTGDPIYESAALRALRRLWSMRSS-LNLLGTTLDVTTGE 264 (577)
Q Consensus 189 GiP~~~vNl~~g~~~~~---~~~t~lAe~GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L~~~~~~-~gL~~~~id~~tG~ 264 (577)
|||+++||+++|..... .+.+++||+||++|||++||+|||||+|+++|+++++.||+.++. .||+|+.||+.+|+
T Consensus 196 giP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd~kY~~~a~~i~~~l~~~~~~~~GL~p~~i~~~~g~ 275 (522)
T PTZ00470 196 GFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITGDPKYAEYVDKVMDALFSMKPAINGLYPIFLNPDAGR 275 (522)
T ss_pred CCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCCCCCCccceEECCccCc
Confidence 99999999999986543 456789999999999999999999999999999999999999887 79999999999999
Q ss_pred eecccccccCCCchhhhhHHHHHHhcCc--hHHHHHHHHHHHHHHHHhhcC--C-CccccccCCCcceeccccccccccc
Q 008122 265 WIEYSSGIGAGVDSFYEYLFKAHILFGK--EDFWRMFHSAYLAVQKYFRHG--P-WYHEADMRNGKATYWQLTSLQAFWP 339 (577)
Q Consensus 265 ~~~~~~~~Ga~~DSyYEYLlK~~iL~g~--~~~~~m~~~a~~~i~k~l~~~--~-~~~~~~~~~g~~~~~~~~hL~cF~p 339 (577)
|++..+++||++|||||||||+|+|+|+ +.|++||.+|+++|++||... + ......+.+|.. .++|+||+||+|
T Consensus 276 ~~~~~~siGa~~DS~YEYLlK~~il~~~~d~~~~~~~~~a~~~i~~~l~~~s~~~~~~v~~~~~~~~-~~~~~hL~cF~g 354 (522)
T PTZ00470 276 FCGNHISLGALGDSYYEYLLKQWLYTNGREERYRRLFVESAKGIIEHLYKRSPKGLTYIAEMDGGSL-TNKMEHLACFAG 354 (522)
T ss_pred cCCCceeecCCcchhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcccCCCCcEEEeeccCCcC-cchhhhhhhhcc
Confidence 9999999999999999999999999974 579999999999999998643 2 222233344444 346999999999
Q ss_pred cchhhccccc-------------cchhhHHHHHHHH--HHhCCCCcEEEccCc----cccCCCCcCCCChhhHHHHHHHH
Q 008122 340 GLQVLVGDIA-------------AANSSHREFVHVW--KKFGVLPERYLLDHL----MLHPTEKYYPLRPELAESTFYLY 400 (577)
Q Consensus 340 G~~~L~g~~~-------------~a~~~~~~~~~~~--~~~Gl~PE~~~~~~~----~~~~~~~~Y~LRPE~iES~fyLy 400 (577)
||++|+|.+. .|.+....|...| +++|++||+|.+..+ .+.+.+++|+||||+|||+||||
T Consensus 355 G~~aLg~~~~~~~~~~~~~~~~~~a~~l~~tC~~~Y~~~~tGl~PE~~~~~~~~~~~~~~~~d~~Y~LRPE~iES~fyly 434 (522)
T PTZ00470 355 GMFALGAAINITPDDEKSARYMEVGEEVTKTCYETYATSPTGLGPEIFHFDPNSGDISPNVHDSHYILRPETVESIFILY 434 (522)
T ss_pred chhhhcccccccccccccHHHHHHHHHHHHHHHHHHHhcccCCCCceEEeccCccccccccCCCCCCCChhHHHHHHHHH
Confidence 9999998421 1222223344444 358999999999753 23456899999999999999999
Q ss_pred HhcCChhHHHHHHHHHHHHHhhcccCCCccccccccc--cccCCcchhHHHHHHhHHHHHhccCC-CCCCCCeEecCCCc
Q 008122 401 QATKDPWYLEVGESIVNSLNSYTKVDGGFASIRDVTT--MQLEDHQHSFFLAETCKYLYLLFDDS-FLVDRNYVFTTEGH 477 (577)
Q Consensus 401 R~TgD~~Yre~gW~if~aiek~~r~~~Gya~i~dV~~--~~~~D~meSFflAETLKYLYLLFsd~-~~~ld~~VFnTEaH 477 (577)
|+||||+||||||+||++|+++||+++||++|+||++ +.++|+|||||||||||||||||+|+ .++||+||||||||
T Consensus 435 R~TgD~~yre~gW~~f~ai~k~~rt~~Gya~i~dV~~~~~~~~D~MeSFflaETLKYlYLlFsd~~~i~ld~~VFnTEAH 514 (522)
T PTZ00470 435 RLTGDPKYREWAWKIFQAIEKHCKTENGYSGLKNVLTVHPQQDDFQESFFLAETLKYLYLLFQPDHVIPLDKYVFNTEAH 514 (522)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCcCCcccchhHHHHHHHHHheecCccccccCCeEECCCCc
Confidence 9999999999999999999999999999999999997 57899999999999999999999985 78999999999999
Q ss_pred cccccc
Q 008122 478 PLPVLS 483 (577)
Q Consensus 478 Pl~i~~ 483 (577)
||||..
T Consensus 515 Pl~i~~ 520 (522)
T PTZ00470 515 PIPIQK 520 (522)
T ss_pred eeecCC
Confidence 999874
No 3
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-133 Score=1036.11 Aligned_cols=421 Identities=38% Similarity=0.597 Sum_probs=383.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCcCCCCCCCcccccccccCCCCCCCCCceeeeeccchhhhccCHHHHH
Q 008122 36 KKRHMKKKVHDMFYHAYENYLTHAFPHDELKPLSKSFTDSLSELGNLKLEHLPQHYNGSALTLIESMSSLVIMGNNTEFE 115 (577)
Q Consensus 36 ~~~~~r~~Vk~~f~hAw~~Y~~~Awg~DEL~P~S~~~~d~~~~~G~~~~~~~~~~~~G~glTLVDSLDTL~IMGl~~EF~ 115 (577)
-..+||++|++||+|||.+|+|||||||||+|||++++|+ .|.|+||||||||++||||.+||+
T Consensus 90 g~nerq~avv~aF~haW~gYkKyawGhD~l~Pvs~~~~d~----------------fglGltiVDslDT~~iMgle~e~~ 153 (546)
T KOG2431|consen 90 GLNERQKAVVDAFLHAWSGYKKYAWGHDELKPVSQSFSDW----------------FGLGLTIVDSLDTAMIMGLEDEFE 153 (546)
T ss_pred chhHHHHHHHHHHHHHHhhhhhhcccccccccchhccccc----------------ccccceEEechhHHHHhhhHHHHH
Confidence 3578999999999999999999999999999999999887 567999999999999999999999
Q ss_pred HHHHHHHHhCCCcccccccccchhhhhcccchhhhhccccchhhhccccchHHHHHHHHHHHhhhccCCCCCCCCcccee
Q 008122 116 RAVLWLSENLNFDVDARINLFECNIRVLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAFDTPTGLPYAWI 195 (577)
Q Consensus 116 ~A~~~v~~~l~F~~d~~VsvFETtIR~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpAFdTptGiP~~~v 195 (577)
+|++||.++++|++++.||+||||||+||||||||+|||+. ++|+||+||||||+|||.|||+|||+.|
T Consensus 154 ea~~Wv~~~L~f~~~~~VNlFEtTIRvLGGLLSayHLsg~~-----------~~L~kA~dlgdrLl~AF~sps~IPysdV 222 (546)
T KOG2431|consen 154 EAREWVEKKLHFEKDRDVNLFETTIRVLGGLLSAYHLSGDE-----------MFLNKAEDLGDRLLPAFSSPSPIPYSDV 222 (546)
T ss_pred HHHHHHHhhcccccccceehhhhhHHHHhhhhhhhccccch-----------hHHHHHHHHHHHHHHhhcCCCCCCccee
Confidence 99999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred eccCCCC--CCCCCCccccccccchhhhhHHHHhhCCchHHHHHHHHHHHHHhccCC--CCCcceeeecCCCceeccccc
Q 008122 196 NLKYGVM--ENETNETSTSGCGSLILEMGALSRLTGDPIYESAALRALRRLWSMRSS--LNLLGTTLDVTTGEWIEYSSG 271 (577)
Q Consensus 196 Nl~~g~~--~~~~~~t~lAe~GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L~~~~~~--~gL~~~~id~~tG~~~~~~~~ 271 (577)
|+.+|.. +.+++.+++||+.|+||||++||++|||+||+++|++++++|.+.... .||+|.+||+.||.|++..++
T Consensus 223 nL~~~~A~~p~~~~~SStaEvttiQlEfr~Ls~ltgd~kY~~~a~kv~ehih~~~~~~~dGLvPi~in~~tG~F~~~tI~ 302 (546)
T KOG2431|consen 223 NLGTGTAHPPRWTGDSSTAEVTTIQLEFRYLSRLTGDPKYEELAEKVTEHIHGLGKKKHDGLVPIFINPNTGLFVGSTIT 302 (546)
T ss_pred ecCCCcccCCCCCCccchhhheeeeeeHHHHHhhcCCchHHHHHHHHHHHHhccCccccCCeeeEEEcCCCCccccceEE
Confidence 9998875 456678999999999999999999999999999999999999987654 599999999999999999999
Q ss_pred ccCCCchhhhhHHHHHHhcCch--HHHHHHHHHHHHHHHHhhcC--C--CccccccCCCcceeccccccccccccchhhc
Q 008122 272 IGAGVDSFYEYLFKAHILFGKE--DFWRMFHSAYLAVQKYFRHG--P--WYHEADMRNGKATYWQLTSLQAFWPGLQVLV 345 (577)
Q Consensus 272 ~Ga~~DSyYEYLlK~~iL~g~~--~~~~m~~~a~~~i~k~l~~~--~--~~~~~~~~~g~~~~~~~~hL~cF~pG~~~L~ 345 (577)
+||.+|||||||||+||++|+. .++++|.+||++|++||.+. | +.+......|....++|+||.||+||++++|
T Consensus 303 lGaRgDSyYEYLlKQwlQtg~~~~~l~~dy~~am~gv~~~Llr~S~P~~~~fiGEl~~G~~fsPKMDHLVCFlpGtL~lG 382 (546)
T KOG2431|consen 303 LGARGDSYYEYLLKQWLQTGKSLTYLRDDYIEAMEGVRKHLLRQSKPNKLWFIGELPHGLQFSPKMDHLVCFLPGTLALG 382 (546)
T ss_pred eccccchHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHhcCCCcceEEEEecccccccCcccceEEEeecchhhhc
Confidence 9999999999999999999986 47799999999999998643 2 3334556677666678999999999999987
Q ss_pred c---------ccccchhhHHHHHHHHH--HhCCCCcEEEccCc--------cccCCCCcCCCChhhHHHHHHHHHhcCCh
Q 008122 346 G---------DIAAANSSHREFVHVWK--KFGVLPERYLLDHL--------MLHPTEKYYPLRPELAESTFYLYQATKDP 406 (577)
Q Consensus 346 g---------~~~~a~~~~~~~~~~~~--~~Gl~PE~~~~~~~--------~~~~~~~~Y~LRPE~iES~fyLyR~TgD~ 406 (577)
. +++.|....+.|+++|+ .+|++||+..|+.. .++|.|+|++||||+|||+|||||+|||.
T Consensus 383 ~~~Gl~~~~~hl~lA~~l~~TCyqMY~~~~TGLaPEIv~Fn~~~~~~~~DiyvKp~D~HnLlRPEtVESlfylYriT~D~ 462 (546)
T KOG2431|consen 383 STNGLPASEEHLELAQELMETCYQMYRQNPTGLAPEIVHFNLYPQPGKNDIYVKPLDRHNLLRPETVESLFYLYRITGDR 462 (546)
T ss_pred cccCCCcchHHHHHHHHHHHHHHHHHccCcCCCCceEEEEeccCCCccCceeeccchhhcccChHHHhhhheeeEecCCc
Confidence 4 23345555566777774 48999999887632 25788999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccCC-Ccccccccccc--ccCCcchhHHHHHHhHHHHHhccCC--CCCCCCeEecCCCccccc
Q 008122 407 WYLEVGESIVNSLNSYTKVDG-GFASIRDVTTM--QLEDHQHSFFLAETCKYLYLLFDDS--FLVDRNYVFTTEGHPLPV 481 (577)
Q Consensus 407 ~Yre~gW~if~aiek~~r~~~-Gya~i~dV~~~--~~~D~meSFflAETLKYLYLLFsd~--~~~ld~~VFnTEaHPl~i 481 (577)
+||||||+||+|+++++|+++ ||++|.||.+. ++.|+|||||||||||||||||+|+ .++||+||||||||||||
T Consensus 463 kYqewGW~if~sfekytrv~~ggytSi~nV~~~~~~~RDkMESF~laETLKYLYLLf~DD~~ilpLdk~VFNTEaHPlPi 542 (546)
T KOG2431|consen 463 KYQEWGWEIFQSFEKYTRVPSGGYTSIDNVKDQKPKRRDKMESFWLAETLKYLYLLFSDDQSILPLDKWVFNTEAHPLPI 542 (546)
T ss_pred hHHHHhHHHHHHHHHhcccCCCCccchhhhhhcCCchhhhHHHHHHHHHHHHHHHhhcCCcccccchheEeccCCCCCCC
Confidence 999999999999999999997 99999999984 5899999999999999999999885 689999999999999999
Q ss_pred cc
Q 008122 482 LS 483 (577)
Q Consensus 482 ~~ 483 (577)
..
T Consensus 543 ~~ 544 (546)
T KOG2431|consen 543 YD 544 (546)
T ss_pred CC
Confidence 74
No 4
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=100.00 E-value=2.2e-130 Score=1065.59 Aligned_cols=409 Identities=44% Similarity=0.701 Sum_probs=346.8
Q ss_pred HHHHHHHHHHHhcCCCCccCCCcCCCCCCCcccccccccCCCCCCCCCceeeeeccchhhhccCHHHHHHHHHHHHHhCC
Q 008122 47 MFYHAYENYLTHAFPHDELKPLSKSFTDSLSELGNLKLEHLPQHYNGSALTLIESMSSLVIMGNNTEFERAVLWLSENLN 126 (577)
Q Consensus 47 ~f~hAw~~Y~~~Awg~DEL~P~S~~~~d~~~~~G~~~~~~~~~~~~G~glTLVDSLDTL~IMGl~~EF~~A~~~v~~~l~ 126 (577)
||+|||++|++||||||||+|+|++++|+ ++|||+|||||||||+|||+++||++|++||.++++
T Consensus 1 ~f~~a~~~Y~~~A~g~Del~P~s~~~~~~---------------~~g~~~TlvDSLdTL~imgl~~ef~~a~~~v~~~~~ 65 (452)
T PF01532_consen 1 MFRHAWNGYKKYAWGHDELRPLSGSGSDS---------------FGGWGATLVDSLDTLYIMGLKDEFNEAVDWVSNNLD 65 (452)
T ss_dssp HHHHHHHHHHHHTTTSSEEETTTTEEE-S---------------STTS-HHHHHHHHHHHHHTHHHHHHHHHHHHHHC--
T ss_pred ChhHHHHHHHHhcCCccccccccCCCCCc---------------cccccceeeeeccceeecCCHHHHHHHHHHHHhhcC
Confidence 89999999999999999999999988775 478999999999999999999999999999998999
Q ss_pred Ccccc-cccccchhhhhcccchhhhhcc--ccchhhhccccchHHHHHHHHHHHhhhccCCCCCCCCccceeeccCCCCC
Q 008122 127 FDVDA-RINLFECNIRVLGGLVSAHILA--TDSANRLVQGSYKNQLLTLAEDLGRRFLPAFDTPTGLPYAWINLKYGVME 203 (577)
Q Consensus 127 F~~d~-~VsvFETtIR~LGGLLSAY~Ls--~d~~~~~~~~~y~~~LL~kA~dLadrLlpAFdTptGiP~~~vNl~~g~~~ 203 (577)
|+++. .|||||||||+||||||||+|| +|+ .||+||+||||+|+||||||+|||+++||++++...
T Consensus 66 f~~~~~~vs~fEt~iR~lGgLLSay~ls~~~d~-----------~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~~~~ 134 (452)
T PF01532_consen 66 FDQDDSTVSVFETTIRVLGGLLSAYDLSGEGDP-----------ILLSKAVELADRLLPAFDTPTGIPYPRVNLRTGGKN 134 (452)
T ss_dssp TTSSSSEEEHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHGGGGSSSSS---SEEETTTCEEE
T ss_pred cCccceeechHHhhhHhhhhhHHHHHHHhccch-----------HHHHHHHHHHHHHHHhccCCCccccceeeecccCCC
Confidence 99987 7999999999999999999999 877 999999999999999999999999999999875543
Q ss_pred C-CCCCccccccccchhhhhHHHHhhCCchHHHHHHHHHHHHHhc--cC-CCCCcceeeecCCCceecccccccCCCchh
Q 008122 204 N-ETNETSTSGCGSLILEMGALSRLTGDPIYESAALRALRRLWSM--RS-SLNLLGTTLDVTTGEWIEYSSGIGAGVDSF 279 (577)
Q Consensus 204 ~-~~~~t~lAe~GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L~~~--~~-~~gL~~~~id~~tG~~~~~~~~~Ga~~DSy 279 (577)
. ....+++||+||++|||++||++||||+|+++|+++++.|++. +. ..||+|+.||+.+|+|++..+++||++|||
T Consensus 135 ~~~~~~~~la~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~ 214 (452)
T PF01532_consen 135 RWPGGESSLAEAGSLQLEFTRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSF 214 (452)
T ss_dssp TTCCGEEEHHHHCSSHHHHHHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHH
T ss_pred CCCCCcccccccccceechhHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchH
Confidence 2 3346789999999999999999999999999999999999994 44 589999999999999999999999999999
Q ss_pred hhhHHHHHHhcC--chHHHHHHHHHHHHHHHHhhcCCCc-------cccccC--CCcceeccccccccccccchhhc---
Q 008122 280 YEYLFKAHILFG--KEDFWRMFHSAYLAVQKYFRHGPWY-------HEADMR--NGKATYWQLTSLQAFWPGLQVLV--- 345 (577)
Q Consensus 280 YEYLlK~~iL~g--~~~~~~m~~~a~~~i~k~l~~~~~~-------~~~~~~--~g~~~~~~~~hL~cF~pG~~~L~--- 345 (577)
||||||+|+|+| ++++++||.+++++|++||+.+|.. ...+.. .+.....+|+||+||+|||++|+
T Consensus 215 YEYLlK~~lL~g~~d~~~~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~ 294 (452)
T PF01532_consen 215 YEYLLKMYLLLGGTDEQYRDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKL 294 (452)
T ss_dssp HHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHT
T ss_pred HHhhhhhhhhcCccchHHHHHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhcc
Confidence 999999999999 6789999999999999998765332 122222 22333456999999999999999
Q ss_pred ----cccccchhhHHHHHHHHHHh--CCCCcEEEccCc-------------cccCCCCcCCCChhhHHHHHHHHHhcCCh
Q 008122 346 ----GDIAAANSSHREFVHVWKKF--GVLPERYLLDHL-------------MLHPTEKYYPLRPELAESTFYLYQATKDP 406 (577)
Q Consensus 346 ----g~~~~a~~~~~~~~~~~~~~--Gl~PE~~~~~~~-------------~~~~~~~~Y~LRPE~iES~fyLyR~TgD~ 406 (577)
++++.|.+.++.|+.+|+.+ |++||+|.++.+ .+.+.+++|+||||+|||+|||||+||||
T Consensus 295 ~~~~~~~~~A~~l~~~C~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~ 374 (452)
T PF01532_consen 295 FNDEGDLELAEELTETCYWLYKSTPTGLGPEIFSFDPCEENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRATGDP 374 (452)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTSSSSS--SEEEESCSCG--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH-BH
T ss_pred cCchhHHHHHHHHHHHHHHHHHhcccCCCceEEEeeccccccccchhhcccccccccccccchhhhhhheeEEEEEcCCc
Confidence 77778888889999999876 999999999862 12456889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccCCCcccccccc--ccccCCcchhHHHHHHhHHHHHhccC-CCCCCCCeEecCCCccccc
Q 008122 407 WYLEVGESIVNSLNSYTKVDGGFASIRDVT--TMQLEDHQHSFFLAETCKYLYLLFDD-SFLVDRNYVFTTEGHPLPV 481 (577)
Q Consensus 407 ~Yre~gW~if~aiek~~r~~~Gya~i~dV~--~~~~~D~meSFflAETLKYLYLLFsd-~~~~ld~~VFnTEaHPl~i 481 (577)
+||||||+||++|||+||+++||++|+||+ .++++|+|||||||||||||||||+| +.+++|+||||||||||||
T Consensus 375 ~yre~gw~if~ai~k~~r~~~G~a~i~dv~~~~~~~~D~meSf~laETlKYlYLlFsd~~~~~ld~~VfnTeaHpl~i 452 (452)
T PF01532_consen 375 KYREWGWDIFQAIEKYCRTECGYAGIKDVTSDPPQKDDRMESFFLAETLKYLYLLFSDPDVISLDEYVFNTEAHPLRI 452 (452)
T ss_dssp HHHHHHHHHHHHHHHHTEETTEE--BSETTSSSSCBBS-B-CHHHHTHHHHHHHHTSSTTTTSTTSEEE-TTS-EEE-
T ss_pred hHHHHHHHHHHHHHHhcccceehhhhcccCcCCcccCCCccceehHhhhHHHHhhcCCcccCCCCCEEECCCCCccCC
Confidence 999999999999999999999999999999 56899999999999999999999999 4899999999999999997
No 5
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-120 Score=966.47 Aligned_cols=427 Identities=35% Similarity=0.571 Sum_probs=379.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCcCCCCCCCcccccccccCCCCCCCCCceeeeeccchhhhccC
Q 008122 31 SYWSAKKRHMKKKVHDMFYHAYENYLTHAFPHDELKPLSKSFTDSLSELGNLKLEHLPQHYNGSALTLIESMSSLVIMGN 110 (577)
Q Consensus 31 ~~~~~~~~~~r~~Vk~~f~hAw~~Y~~~Awg~DEL~P~S~~~~d~~~~~G~~~~~~~~~~~~G~glTLVDSLDTL~IMGl 110 (577)
+-.+.+..+||++||+||+|||++|++||||+|||+|.|+.+..+ +-.| .+..|+||||||||||||||
T Consensus 166 ~~~~~~~~~rrekVkemm~hAw~~Yk~yawg~neLrp~sk~g~s~-~ifG----------~~~~GATIvDslDTlyim~l 234 (625)
T KOG2204|consen 166 PEDRNKYRERREKVKEMMKHAWNNYKKYAWGKNELRPSSKQGHSS-SIFG----------AHLKGATIVDSLDTLYIMGL 234 (625)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhhcccccccCccccCCccc-cccc----------cCcCCchHHHhhhHHHHHHH
Confidence 444467788999999999999999999999999999998877532 1111 13579999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCc-ccccccccchhhhhcccchhhhhccccchhhhccccchHHHHHHHHHHHhhhccCCCCCCC
Q 008122 111 NTEFERAVLWLSENLNFD-VDARINLFECNIRVLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAFDTPTG 189 (577)
Q Consensus 111 ~~EF~~A~~~v~~~l~F~-~d~~VsvFETtIR~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpAFdTptG 189 (577)
++||++|++||+.+++|+ ++..+||||||||++|||||||.|||++ ++++||+++||+|||||+||||
T Consensus 235 ~~e~qEar~wi~~~~~~~~v~~~~SvFE~NirF~GGllsay~lsge~-----------~f~~kA~~igdkLLpAfntptG 303 (625)
T KOG2204|consen 235 KEEFQEARDWIAYNLDFKTVPIELSVFETNIRFVGGLLSAYALSGEE-----------MFLEKAPEIGDKLLPAFNTPTG 303 (625)
T ss_pred HHHHHHHHHHHHhhcccccccchhheeeeeeeeehhhHHHhhhcccH-----------HHHHhhHHHHHHhhhcccCCCC
Confidence 999999999999999999 8899999999999999999999999999 9999999999999999999999
Q ss_pred CccceeeccCCCCCCCC----CCccccccccchhhhhHHHHhhCCchHHHHHHHHHHHHHhccCCCCCcceeeecCCCce
Q 008122 190 LPYAWINLKYGVMENET----NETSTSGCGSLILEMGALSRLTGDPIYESAALRALRRLWSMRSSLNLLGTTLDVTTGEW 265 (577)
Q Consensus 190 iP~~~vNl~~g~~~~~~----~~t~lAe~GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L~~~~~~~gL~~~~id~~tG~~ 265 (577)
||+.-||.++|..++.+ +.+.+||.||++|||.+||++||||+|.++++++-+.|-++..+.||+|++|||+||+|
T Consensus 304 Ip~~~vn~ksG~~~n~~wasgg~SILaE~gtlhlef~~LS~ltg~P~~~ekv~~IRk~l~k~ekP~GLypnYinP~sg~w 383 (625)
T KOG2204|consen 304 IPKALVNNKSGDADNYGWASGGSSILAEFGTLHLEFSYLSKLTGNPTFAEKVVKIRKVLNKSEKPHGLYPNYINPSSGEW 383 (625)
T ss_pred CchhhhccccCccCCcccccCcchHhhhcCceeeehHHhhhccCCchHHHHHHHHHHHHHhhcCCCCCCcccccCCCCch
Confidence 99999999999877653 35679999999999999999999999999999999999998888999999999999999
Q ss_pred ecccccccCCCchhhhhHHHHHHhcCc--hHHHHHHHHHHHHHHHHhhcC----CCccccccCCCcceeccccccccccc
Q 008122 266 IEYSSGIGAGVDSFYEYLFKAHILFGK--EDFWRMFHSAYLAVQKYFRHG----PWYHEADMRNGKATYWQLTSLQAFWP 339 (577)
Q Consensus 266 ~~~~~~~Ga~~DSyYEYLlK~~iL~g~--~~~~~m~~~a~~~i~k~l~~~----~~~~~~~~~~g~~~~~~~~hL~cF~p 339 (577)
.....++||.+|||||||+|.|+++|+ .++++||.+++.+|.+||... .....+++.+|..-+ +|+||+||.|
T Consensus 384 gq~~tslg~lgDSfyeyllK~wl~s~kTd~eak~my~~am~Ai~~~li~~S~~s~ltyi~e~~~g~leh-Km~hlacf~g 462 (625)
T KOG2204|consen 384 GQHHTSLGALGDSFYEYLLKAWLQSDKTDCEAKGMYEDAMIAIEKYLIFKSDGSGLTYISEWNGGGLEH-KMGHLACFAG 462 (625)
T ss_pred hhHHhHHhhhhhhHHHHHHHHHhhcCCcchHHHHhHHHHHHHHHhhheeccCCCCeEEEEecCCCchhh-hhchhhcccc
Confidence 988889999999999999999999997 479999999999999998642 223345666666544 6999999999
Q ss_pred cchhhccccc---------------cchhhHHHHHHHHHHhCCCCcEEEccCcc----ccCCCCcCCCChhhHHHHHHHH
Q 008122 340 GLQVLVGDIA---------------AANSSHREFVHVWKKFGVLPERYLLDHLM----LHPTEKYYPLRPELAESTFYLY 400 (577)
Q Consensus 340 G~~~L~g~~~---------------~a~~~~~~~~~~~~~~Gl~PE~~~~~~~~----~~~~~~~Y~LRPE~iES~fyLy 400 (577)
||++|+..-. .|.+||+.|.+ ..++++||.|.|+.+. +...+.+|+||||+|||+||||
T Consensus 463 Gm~algA~~~~~~~~~~~y~el~~eia~TchesY~r--t~T~lgpesf~fn~~~ea~~~r~~EsyyILrpEviEs~fYlw 540 (625)
T KOG2204|consen 463 GMFALGAIKGDTVGSSKHYLELGGEIATTCHESYTR--TTTKLGPESFWFNHGVEAFAVRKVESYYILRPEVIESYFYLW 540 (625)
T ss_pred cceeeccccCCCcchhHHHHHHhHHHHHHHHHHHhc--cccccChhhhcccCccchhhhhcccceeecCHHHHHHHHHHh
Confidence 9999975321 23345554443 3578999999998753 2345789999999999999999
Q ss_pred HhcCChhHHHHHHHHHHHHHhhcccCCCccccccccc--cccCCcchhHHHHHHhHHHHHhccC-CCCCCCCeEecCCCc
Q 008122 401 QATKDPWYLEVGESIVNSLNSYTKVDGGFASIRDVTT--MQLEDHQHSFFLAETCKYLYLLFDD-SFLVDRNYVFTTEGH 477 (577)
Q Consensus 401 R~TgD~~Yre~gW~if~aiek~~r~~~Gya~i~dV~~--~~~~D~meSFflAETLKYLYLLFsd-~~~~ld~~VFnTEaH 477 (577)
|+||||+||+|||+.||+||||||+..||++|+||.. +.++|.|+||||||||||||||||| +.+|||+||||||||
T Consensus 541 RlT~d~kyR~wgweavqalek~cr~~~G~~glkdvY~~~~~~ddvqqSFflAEtLKYlyLlFSdddllsLD~wVFNteAH 620 (625)
T KOG2204|consen 541 RLTGDQKYRSWGWEAVQALEKYCRVAKGYSGLKDVYESGPKVDDVQQSFFLAETLKYLYLLFSDDDLLSLDKWVFNTEAH 620 (625)
T ss_pred hhcCChhHHHHHHHHHHHHHHhcccccchhhhhHhhhCCCcccchHHHHHHHHHHHHHhheecCCCcccHHHhhhccCCc
Confidence 9999999999999999999999999999999999998 5799999999999999999999998 588999999999999
Q ss_pred ccccc
Q 008122 478 PLPVL 482 (577)
Q Consensus 478 Pl~i~ 482 (577)
||||.
T Consensus 621 plpi~ 625 (625)
T KOG2204|consen 621 PLPIK 625 (625)
T ss_pred ccCCC
Confidence 99983
No 6
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-110 Score=848.71 Aligned_cols=444 Identities=44% Similarity=0.752 Sum_probs=400.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCcCCCCCCCcccccccccCCCCCCCCCceeeeeccchhhhccCHH
Q 008122 33 WSAKKRHMKKKVHDMFYHAYENYLTHAFPHDELKPLSKSFTDSLSELGNLKLEHLPQHYNGSALTLIESMSSLVIMGNNT 112 (577)
Q Consensus 33 ~~~~~~~~r~~Vk~~f~hAw~~Y~~~Awg~DEL~P~S~~~~d~~~~~G~~~~~~~~~~~~G~glTLVDSLDTL~IMGl~~ 112 (577)
.++++++..+++-+||.|||++||.||||.|||+|+|..++=.-..-.+=+.+|.+|+| ++|||||||||.||+..+
T Consensus 2 ~~~dkkkl~~e~~dmf~h~y~nyme~a~padelmplsckgrirg~~psrgdvddalgkf---sltlidsldtlvvln~~~ 78 (587)
T KOG2430|consen 2 EEEDKKKLGKEALDMFDHAYGNYMEHAFPADELMPLSCKGRIRGQEPSRGDVDDALGKF---SLTLIDSLDTLVVLNELD 78 (587)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhhhccCchhhcccccccceecCcCCCCCchhhhhcce---eeeeeccccceeeccchH
Confidence 46788889999999999999999999999999999654332110000011567888888 999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcccccccccchhhhhcccchhhhhcccc--chhhhccccchHHHHHHHHHHHhhhccCCCCCCCC
Q 008122 113 EFERAVLWLSENLNFDVDARINLFECNIRVLGGLVSAHILATD--SANRLVQGSYKNQLLTLAEDLGRRFLPAFDTPTGL 190 (577)
Q Consensus 113 EF~~A~~~v~~~l~F~~d~~VsvFETtIR~LGGLLSAY~Ls~d--~~~~~~~~~y~~~LL~kA~dLadrLlpAFdTptGi 190 (577)
||++|++-|.++++|+.|..|||||||||+|||||+||.|+.- +.+...+++|++.||..|++||.+|||||+|.+|+
T Consensus 79 efe~ai~~vik~v~~dnd~vvsvfetnirvlggli~~h~la~llk~e~~e~lq~y~dellkmakelg~kllpafnttsgl 158 (587)
T KOG2430|consen 79 EFEDAIDKVIKDVNFDNDHVVSVFETNIRVLGGLIGAHSLAELLKEEKGERLQTYDDELLKMAKELGNKLLPAFNTTSGL 158 (587)
T ss_pred HHHHHHHHHHHhccCCCCeEEEEeecccHhhhccchHHHHHHHHHHhccchhhhhhHHHHHHHHHHhhhhccccccCCCC
Confidence 9999999999999999999999999999999999999999752 22345688999999999999999999999999999
Q ss_pred ccceeeccCCCCCC-----CCCCccccccccchhhhhHHHHhhCCchHHHHHHHHHHHHHhccCC-CCCcceeeecCCCc
Q 008122 191 PYAWINLKYGVMEN-----ETNETSTSGCGSLILEMGALSRLTGDPIYESAALRALRRLWSMRSS-LNLLGTTLDVTTGE 264 (577)
Q Consensus 191 P~~~vNl~~g~~~~-----~~~~t~lAe~GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L~~~~~~-~gL~~~~id~~tG~ 264 (577)
||++||++.|.... ....||+|++||++|||..||++||+|.|++.|++|++.||+.|.. .+|+|+.||+.+|.
T Consensus 159 p~~rinlk~gi~~pea~~~~e~dtctac~gtlilefaals~~tg~~ifee~arkaldflwekr~rss~l~g~~inihsgd 238 (587)
T KOG2430|consen 159 PFPRINLKFGIQDPEAHLGREKDTCTACAGTLILEFAALSRFTGAPIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGD 238 (587)
T ss_pred CCcccchhccccChhhhhcccccchhhccchhhhhHHHHhhccCChhhHHHHHHHHHHHHHHhcccccccceeEEeccCc
Confidence 99999999997642 2357899999999999999999999999999999999999987653 68999999999999
Q ss_pred eecccccccCCCchhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCccccccCCCc--ceeccccccccccccch
Q 008122 265 WIEYSSGIGAGVDSFYEYLFKAHILFGKEDFWRMFHSAYLAVQKYFRHGPWYHEADMRNGK--ATYWQLTSLQAFWPGLQ 342 (577)
Q Consensus 265 ~~~~~~~~Ga~~DSyYEYLlK~~iL~g~~~~~~m~~~a~~~i~k~l~~~~~~~~~~~~~g~--~~~~~~~hL~cF~pG~~ 342 (577)
|+...+|+|||+|||||||+|+|||+||+.|.++|.+.|++|++|+.++|.+..+.+..-. ...+ |+.|-+||||++
T Consensus 239 w~rkdsgigagidsyyey~lkayillgddsfldrfn~hydai~ryi~k~pi~ldvhihkp~l~ar~~-mdallaf~pglq 317 (587)
T KOG2430|consen 239 WTRKDSGIGAGIDSYYEYLLKAYILLGDDSFLDRFNKHYDAIKRYINKGPIFLDVHIHKPMLAARGF-MDALLAFFPGLQ 317 (587)
T ss_pred ceecccCcCcchHHHHHHHHHHhheeccHHHHHHHHHHHHHHHHHhcCCCeEEEEecccchhhHhhH-HHHHHHhCcchh
Confidence 9999999999999999999999999999999999999999999999999988777764322 2223 999999999999
Q ss_pred hhccccccchhhHHHHHHHHHHhCCCCcEEEccCccccCCCCcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHHhh
Q 008122 343 VLVGDIAAANSSHREFVHVWKKFGVLPERYLLDHLMLHPTEKYYPLRPELAESTFYLYQATKDPWYLEVGESIVNSLNSY 422 (577)
Q Consensus 343 ~L~g~~~~a~~~~~~~~~~~~~~Gl~PE~~~~~~~~~~~~~~~Y~LRPE~iES~fyLyR~TgD~~Yre~gW~if~aiek~ 422 (577)
+|-|++..|+++|+..+++-++..+.||.|.-+.+ +|+. ..++|||.+||+|+|||+||||.|.++|-.|.++|||+
T Consensus 318 vlkgdik~aie~heml~qvikkh~flpeaft~df~-vhwa--ehpirpefaestyflykat~dp~yl~v~k~iidninky 394 (587)
T KOG2430|consen 318 VLKGDIKEAIEMHEMLFQVIKKHKFLPEAFTHDFQ-VHWA--EHPIRPEFAESTYFLYKATGDPHYLEVAKQIIDNINKY 394 (587)
T ss_pred hhccccHHHHHHHHHHHHHHHHcccChHhhcccce-eecc--cCCCChhhhhhheeeecccCCchHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999987765 5554 68999999999999999999999999999999999999
Q ss_pred cccCCCccccccccccccCCcchhHHHHHHhHHHHHhccCC---CCCCCCeEecCCCccccccc
Q 008122 423 TKVDGGFASIRDVTTMQLEDHQHSFFLAETCKYLYLLFDDS---FLVDRNYVFTTEGHPLPVLS 483 (577)
Q Consensus 423 ~r~~~Gya~i~dV~~~~~~D~meSFflAETLKYLYLLFsd~---~~~ld~~VFnTEaHPl~i~~ 483 (577)
+|+|||||+++||+++..+|+|+||||||++|||||||.|. .++.|+|||+||||-||.+-
T Consensus 395 akvpcgfaalkdirt~~~ed~mdsf~lae~fkylylifad~ediifd~d~yi~tteah~lpl~i 458 (587)
T KOG2430|consen 395 AKVPCGFAALKDIRTGSHEDQMDSFFLAEMFKYLYLIFADKEDIIFDIDDYIFTTEAHFLPLSI 458 (587)
T ss_pred eeCCchHHHHHHHhhcchHHHHHHHHHHHHHHHHHheecCHHHceechhHheEeecceeeeeee
Confidence 99999999999999999999999999999999999999984 35789999999999999753
No 7
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=97.86 E-value=0.002 Score=68.48 Aligned_cols=264 Identities=14% Similarity=-0.020 Sum_probs=148.1
Q ss_pred hhhhcccchhhhhccccchhhhccccchHHHHHHHHHHHhhhccCC-CCCCCCccceeeccCCCCCCCCCCccccccccc
Q 008122 139 NIRVLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAF-DTPTGLPYAWINLKYGVMENETNETSTSGCGSL 217 (577)
Q Consensus 139 tIR~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpAF-dTptGiP~~~vNl~~g~~~~~~~~t~lAe~GTl 217 (577)
.-|.|-+|-.||.+++++ ..|+.|+...+.|..-| |..+|-=+..++ +.|.+..... .+=+-+=+
T Consensus 55 ~ar~i~~~a~a~~~~~~~-----------~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~-~~g~~~~~~~--~l~~~a~~ 120 (384)
T cd00249 55 QARQVYCFAVAYLLGWRP-----------EWLEAAEHGLEYLDRHGRDPDHGGWYFALD-QDGRPVDATK--DLYSHAFA 120 (384)
T ss_pred ecHHHHHHHHHHHhcCCh-----------hHHHHHHHHHHHHHHhCcCCCCCCEEEEEc-CCCCCccccc--chHHHHHH
Confidence 458888999999999988 88999999999999966 444243233332 1333322111 12223334
Q ss_pred hhhhhHHHHhhCCchHHHHHHHHHHHHHhcc-CCCCCcceeeecCCCceecccccccCCCchh---hhhHHHHHHhcCch
Q 008122 218 ILEMGALSRLTGDPIYESAALRALRRLWSMR-SSLNLLGTTLDVTTGEWIEYSSGIGAGVDSF---YEYLFKAHILFGKE 293 (577)
Q Consensus 218 ~LEF~~LS~lTGd~kY~~~a~ra~~~L~~~~-~~~gL~~~~id~~tG~~~~~~~~~Ga~~DSy---YEYLlK~~iL~g~~ 293 (577)
+.=+..|.+.|||+.|.+.|+++++.+.+.- ...|.+-...+.+ + ..+-+ ..++ .|-|+..+-++|++
T Consensus 121 l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~---~----~~~~~-~~~~~h~~~all~l~~~tgd~ 192 (384)
T cd00249 121 LLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPG---T----PPYRG-SNPHMHLLEAMLAAYEATGEQ 192 (384)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCC---C----CCCCC-CChhHHHHHHHHHHHHHhCCH
Confidence 4557789999999999999999999987643 2233322223322 1 11111 2333 68899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCC--CccccccCCCcceeccccccccccccchhhc-------cccccchhhHHHHHHHH--
Q 008122 294 DFWRMFHSAYLAVQKYFRHGP--WYHEADMRNGKATYWQLTSLQAFWPGLQVLV-------GDIAAANSSHREFVHVW-- 362 (577)
Q Consensus 294 ~~~~m~~~a~~~i~k~l~~~~--~~~~~~~~~g~~~~~~~~hL~cF~pG~~~L~-------g~~~~a~~~~~~~~~~~-- 362 (577)
++.++-.+.++.+.+++...+ .+.+.......... .+--....||.+.-. ..+..-.........++
T Consensus 193 ~~~~~A~~l~~~~~~~~~~~~~G~~~e~~~~~~~~~~--~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~ 270 (384)
T cd00249 193 KYLDRADEIADLILDRFIDAESGVVREHFDEDWNPYN--GDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDL 270 (384)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCeEEEEECCCCCCCc--CcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 998888888888888765321 11111100101000 000001224433210 01110000011111222
Q ss_pred -HHhCCCCc---EEE-ccCccccCCCCcCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHHHhhcccC
Q 008122 363 -KKFGVLPE---RYL-LDHLMLHPTEKYYPL--RPELAESTFYLYQATKDPWYLEVGESIVNSLNSYTKVD 426 (577)
Q Consensus 363 -~~~Gl~PE---~~~-~~~~~~~~~~~~Y~L--RPE~iES~fyLyR~TgD~~Yre~gW~if~aiek~~r~~ 426 (577)
...|.-|| .+. .....-.+....-.. --|.+..+..+|++|||++|.+++-++++.+.++...+
T Consensus 271 ~~~~~~d~~~G~~~~~~~~~~~~~~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~~~~d~ 341 (384)
T cd00249 271 ALALGWDPERGGLYYSFLDDGGLLEDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWRHFIDP 341 (384)
T ss_pred HHHhCcCccCCCEEEeeECCCCCcccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 23455554 232 211110011111222 34788889999999999999999999999998877654
No 8
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.67 E-value=0.00067 Score=76.23 Aligned_cols=139 Identities=17% Similarity=0.124 Sum_probs=87.3
Q ss_pred hhhcccchhhhhccccchhhhccccchHHHHHHHHHHHhhh---ccCCCCCCCCccceeeccCCCCCCCCCCcccccccc
Q 008122 140 IRVLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRF---LPAFDTPTGLPYAWINLKYGVMENETNETSTSGCGS 216 (577)
Q Consensus 140 IR~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrL---lpAFdTptGiP~~~vNl~~g~~~~~~~~t~lAe~GT 216 (577)
-.+|-||+.+|+++|++ .+|+.|+.+||.+ +..|+.. |.. .....|.|.
T Consensus 128 ~~ll~gl~~~y~~tG~~-----------~~L~v~~k~ad~~~~~~~~~~~~---~~~--------------~~~~~~~~~ 179 (520)
T PF07944_consen 128 GKLLEGLIDYYEATGNE-----------RALDVATKLADWVYRRLSRLGPE---PGQ--------------KMGYPEHGG 179 (520)
T ss_pred hHHHHHHHHHHHHHCcH-----------HHHHHHHHHHHHHHHHhccCCHH---Hhh--------------cccccccch
Confidence 35788999999999998 9999999999999 4444311 100 011225566
Q ss_pred chhhhhHHHHhhCCchHHHHHHHHHHHHHhccCCCCCcceeeecCCCceecccccccCCCchhhhhHHHHHHhcCchHHH
Q 008122 217 LILEMGALSRLTGDPIYESAALRALRRLWSMRSSLNLLGTTLDVTTGEWIEYSSGIGAGVDSFYEYLFKAHILFGKEDFW 296 (577)
Q Consensus 217 l~LEF~~LS~lTGd~kY~~~a~ra~~~L~~~~~~~gL~~~~id~~tG~~~~~~~~~Ga~~DSyYEYLlK~~iL~g~~~~~ 296 (577)
+.+-+..|-++|||++|.++|++..+.-.... .++ -...|...+.......+-.-..-..|+-+...|.++|+++|+
T Consensus 180 i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~--~~~-~~~~d~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~ 256 (520)
T PF07944_consen 180 INEALVRLYEITGDERYLDLAEYFVDQRGFDP--YDL-AYGQDHLPGRHANTHIGHAVRAMYLYSGAADLYEETGDEEYL 256 (520)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--Cch-hhcCccCCCccccceeeEEEEhhhhhhHHHHHHHHhCCHHHH
Confidence 67789999999999999999998776532111 000 011111111111111111112236788889999999999877
Q ss_pred HHHHHHHHHHHHH
Q 008122 297 RMFHSAYLAVQKY 309 (577)
Q Consensus 297 ~m~~~a~~~i~k~ 309 (577)
+.-...++.|.++
T Consensus 257 ~a~~~~w~~v~~~ 269 (520)
T PF07944_consen 257 DAAENFWDNVVRH 269 (520)
T ss_pred HHHHHHHHHHHhc
Confidence 7666666665543
No 9
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=97.62 E-value=0.0016 Score=72.24 Aligned_cols=347 Identities=18% Similarity=0.112 Sum_probs=189.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCcCCCCCCCcccccccccCCCCCCCCCceeeeeccchhhhccC
Q 008122 31 SYWSAKKRHMKKKVHDMFYHAYENYLTHAFPHDELKPLSKSFTDSLSELGNLKLEHLPQHYNGSALTLIESMSSLVIMGN 110 (577)
Q Consensus 31 ~~~~~~~~~~r~~Vk~~f~hAw~~Y~~~Awg~DEL~P~S~~~~d~~~~~G~~~~~~~~~~~~G~glTLVDSLDTL~IMGl 110 (577)
.|+...+--|..++...|.-.| ....-+++.--.+| ..|.+-+||++|++++.
T Consensus 8 ~~~~~p~~lr~~~~~~~~l~~~-~~~~Lc~~a~f~~p------------------------s~~~~~~~~~~~~~~~~-- 60 (625)
T KOG2204|consen 8 AMQLPPDVLRLKQIFLIFLGSS-FQETLCLGANFRLP------------------------SSSPLLLIDLLDSSYLC-- 60 (625)
T ss_pred cCCCChHHHHHHHHHHHHHHHH-HHHHhhhhheeeCC------------------------CCCchhheeeccchhhh--
Confidence 3333344445556666655555 34566777766677 33467899999999877
Q ss_pred HHHHHHHHHHHHHhCCCccc----ccccccchhhhhcccchhhhhccccchhhhccccchHHHHHHHHHHHhhhccCCCC
Q 008122 111 NTEFERAVLWLSENLNFDVD----ARINLFECNIRVLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAFDT 186 (577)
Q Consensus 111 ~~EF~~A~~~v~~~l~F~~d----~~VsvFETtIR~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpAFdT 186 (577)
+..+++.++-++ .+|-.. .....-+.+-|+|-+++|+|...-+. . |++|++.++.++..|++
T Consensus 61 ~~~v~d~~n~~~--~~~~~~~~~~~~~~~p~~~~~~le~~~s~~~~~~~r-----------~-L~~ak~~~~~~~~~~~~ 126 (625)
T KOG2204|consen 61 TPLVQDVVNRII--FDFPAPPLAMEVIDAPDITTRVLEGLLSAYEEEMDR-----------R-LNKAKEVLPFILRSFDT 126 (625)
T ss_pred hhHHHhcccccc--ccCCCcccccccccccccchhhhhhhHHHhhHHHHH-----------H-HHhhhhccccccccccC
Confidence 666666665333 344331 23456777889999999999998775 5 99999999999999999
Q ss_pred CCCCccceeeccCCCCCCCCCCccccccccchhhhhHHHHhhCCchHHHHHHHHHH---HHHhccCCCCCcceeeecCCC
Q 008122 187 PTGLPYAWINLKYGVMENETNETSTSGCGSLILEMGALSRLTGDPIYESAALRALR---RLWSMRSSLNLLGTTLDVTTG 263 (577)
Q Consensus 187 ptGiP~~~vNl~~g~~~~~~~~t~lAe~GTl~LEF~~LS~lTGd~kY~~~a~ra~~---~L~~~~~~~gL~~~~id~~tG 263 (577)
|+.+|....-.+..........+-...-++-.|-|..++..+. .+|.+..+++-+ +-|+....-.+-++.++|.+.
T Consensus 127 ~n~~~~~k~~~~s~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~rrekVkemm~hAw~~Yk~yawg~neLrp~sk 205 (625)
T KOG2204|consen 127 PNRIPIKKPFQKSDLRNRFPDRTVPSGQLTPALAFESLDPEDR-NKYRERREKVKEMMKHAWNNYKKYAWGKNELRPSSK 205 (625)
T ss_pred cccccccccccchhhhhcCCCcccCCccCCccccccCcCccch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccCcccc
Confidence 9999865544332221111112222333233777889999988 788887777554 457665444555677777665
Q ss_pred ceeccccccc--CCCchhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCccccccCCCcceeccccccccccccc
Q 008122 264 EWIEYSSGIG--AGVDSFYEYLFKAHILFGKEDFWRMFHSAYLAVQKYFRHGPWYHEADMRNGKATYWQLTSLQAFWPGL 341 (577)
Q Consensus 264 ~~~~~~~~~G--a~~DSyYEYLlK~~iL~g~~~~~~m~~~a~~~i~k~l~~~~~~~~~~~~~g~~~~~~~~hL~cF~pG~ 341 (577)
+--. .+-+| ..+-+--.-|=-.||+- ..+-|+++-+=|...+.... .++.... ++-=-=|.+|+
T Consensus 206 ~g~s-~~ifG~~~~GATIvDslDTlyim~----l~~e~qEar~wi~~~~~~~~-------v~~~~Sv--FE~NirF~GGl 271 (625)
T KOG2204|consen 206 QGHS-SSIFGAHLKGATIVDSLDTLYIMG----LKEEFQEARDWIAYNLDFKT-------VPIELSV--FETNIRFVGGL 271 (625)
T ss_pred CCcc-ccccccCcCCchHHHhhhHHHHHH----HHHHHHHHHHHHHhhccccc-------ccchhhe--eeeeeeeehhh
Confidence 4321 12233 12222222122222222 22334444333332221110 0111100 11111378888
Q ss_pred hhhc---ccc---ccchhhHHHHHHHH-HHhCCCCcEEEccCccc---cC-CCCcCCC------ChhhHHHHHHHHHhcC
Q 008122 342 QVLV---GDI---AAANSSHREFVHVW-KKFGVLPERYLLDHLML---HP-TEKYYPL------RPELAESTFYLYQATK 404 (577)
Q Consensus 342 ~~L~---g~~---~~a~~~~~~~~~~~-~~~Gl~PE~~~~~~~~~---~~-~~~~Y~L------RPE~iES~fyLyR~Tg 404 (577)
+.+- |+- ..|...-....-.| +++|+.--..+...+.. .+ +...-+| -=| .-||=++||
T Consensus 272 lsay~lsge~~f~~kA~~igdkLLpAfntptGIp~~~vn~ksG~~~n~~wasgg~SILaE~gtlhle----f~~LS~ltg 347 (625)
T KOG2204|consen 272 LSAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKALVNNKSGDADNYGWASGGSSILAEFGTLHLE----FSYLSKLTG 347 (625)
T ss_pred HHHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchhhhccccCccCCcccccCcchHhhhcCceeee----hHHhhhccC
Confidence 7553 321 11111111111111 24555444444433311 00 0001122 112 347889999
Q ss_pred ChhHHHHHHHHHHHHHhhcccCCCccccccccc
Q 008122 405 DPWYLEVGESIVNSLNSYTKVDGGFASIRDVTT 437 (577)
Q Consensus 405 D~~Yre~gW~if~aiek~~r~~~Gya~i~dV~~ 437 (577)
||.|++..-.|=+.+++.-|-.+=|...-+-.+
T Consensus 348 ~P~~~ekv~~IRk~l~k~ekP~GLypnYinP~s 380 (625)
T KOG2204|consen 348 NPTFAEKVVKIRKVLNKSEKPHGLYPNYINPSS 380 (625)
T ss_pred CchHHHHHHHHHHHHHhhcCCCCCCcccccCCC
Confidence 999999999999999998886644555444333
No 10
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00059 Score=77.68 Aligned_cols=174 Identities=22% Similarity=0.260 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCcCCCCCCCcccccccccCCCCCCCCCceeeeeccchh-hhccCHHH
Q 008122 35 AKKRHMKKKVHDMFYHAYENYLTHAFPHDELKPLSKSFTDSLSELGNLKLEHLPQHYNGSALTLIESMSSL-VIMGNNTE 113 (577)
Q Consensus 35 ~~~~~~r~~Vk~~f~hAw~~Y~~~Awg~DEL~P~S~~~~d~~~~~G~~~~~~~~~~~~G~glTLVDSLDTL-~IMGl~~E 113 (577)
++-.++.+.+|+...-++.. -.+| ++|. .++-+|||+ +|.+|--. .+.|..+-
T Consensus 379 ~~~~~~l~~~r~kL~~~R~~---------R~~P----~~Dd----------kvlt~wNgl---mi~aLa~a~~~~~d~~~ 432 (667)
T COG1331 379 EEAEEKLERAREKLLAAREK---------RKQP----SRDD----------KVLTDWNGL---MIAALAEAGRVLGDPEY 432 (667)
T ss_pred hhhHHHHHHHHHHHHHHHHh---------CCCC----CCCc----------ceeeccHHH---HHHHHHHHHHHcCChHH
Confidence 45556677777776655543 1234 3343 233345654 34454433 45565544
Q ss_pred HH---HHHHHHHHhCCCc------ccc---cccccchhhhhcccchhhhhccccchhhhccccchHHHHHHHHHHHhhhc
Q 008122 114 FE---RAVLWLSENLNFD------VDA---RINLFECNIRVLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFL 181 (577)
Q Consensus 114 F~---~A~~~v~~~l~F~------~d~---~VsvFETtIR~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLl 181 (577)
++ ++.++|.+++.=+ .+| .+..-|--..++.|||+.|+.++|. .+|++|++|++.++
T Consensus 433 l~~A~~~~~fi~~~l~~~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~-----------~yL~~A~~L~~~~i 501 (667)
T COG1331 433 LEAAERAADFILDNLYVDRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDL-----------AYLEKAIELADEAI 501 (667)
T ss_pred HHHHHHHHHHHHHhhcccchheeeecCcccccccchhHHHHHHHHHHHHHhhCcH-----------HHHHHHHHHHHHHH
Confidence 44 4446777766433 233 3566788899999999999999998 99999999999999
Q ss_pred cCCCCCC-CCccceeeccCCCC--CC-CCCCccccccccchhhhhHHHHhhCCchHHHHHHHHHHHHHh
Q 008122 182 PAFDTPT-GLPYAWINLKYGVM--EN-ETNETSTSGCGSLILEMGALSRLTGDPIYESAALRALRRLWS 246 (577)
Q Consensus 182 pAFdTpt-GiP~~~vNl~~g~~--~~-~~~~t~lAe~GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L~~ 246 (577)
..|-.+. | -|..-....... +. .......+.-+....-+.+||++|||.+|.+.|+++.+.+..
T Consensus 502 ~~f~d~~gG-f~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~~~ 569 (667)
T COG1331 502 ADFWDDEGG-FYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDILQAFAG 569 (667)
T ss_pred HHhcCCCCC-cccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Confidence 9996555 5 332211111111 11 112334456677788899999999999999999999988754
No 11
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.66 E-value=0.02 Score=60.47 Aligned_cols=126 Identities=25% Similarity=0.274 Sum_probs=79.6
Q ss_pred hcccchhhhhccccchhhhccccchHHHHHHHHHHHhhhccCCCCCCCCccceeeccCCCCCCCCCCccccccccchhhh
Q 008122 142 VLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAFDTPTGLPYAWINLKYGVMENETNETSTSGCGSLILEM 221 (577)
Q Consensus 142 ~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpAFdTptGiP~~~vNl~~g~~~~~~~~t~lAe~GTl~LEF 221 (577)
+++||+.+|+.++|+ .+++.|++.++.++......+ ......+|-+.+
T Consensus 30 ~~~gl~~~~~~tgd~-----------~~~~~a~~~~~~~~~~~~~~~-------------------~~d~~~~g~~~~-- 77 (336)
T PF07470_consen 30 FWYGLLEAYEYTGDE-----------RYLDYAERWADRFIEEDGSDY-------------------NLDDHDIGFLLL-- 77 (336)
T ss_dssp HHHHHHHHHHHH--H-----------HHHHHHHHHHHHHHHHHHTTT-------------------SCCGTTHHHHHH--
T ss_pred HHHHHHHHHHHHCCH-----------HHHHHHHHHHHHHHhccCCcc-------------------CCchhhhHHHHH--
Confidence 678899999999998 888899988888776543300 001123344343
Q ss_pred hHHHHhhCCchHHHHHHHHHHHHHhccC--CCCCcceeeecCCCceecccccccCCCchhh---hhHHHHHHhcCchHHH
Q 008122 222 GALSRLTGDPIYESAALRALRRLWSMRS--SLNLLGTTLDVTTGEWIEYSSGIGAGVDSFY---EYLFKAHILFGKEDFW 296 (577)
Q Consensus 222 ~~LS~lTGd~kY~~~a~ra~~~L~~~~~--~~gL~~~~id~~tG~~~~~~~~~Ga~~DSyY---EYLlK~~iL~g~~~~~ 296 (577)
.|-+.|||++|.+++.++.+.+.+... ..|-+.. +.....+ .| +|+.| +.|...+.++|++.|.
T Consensus 78 -~~y~~t~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~--~~~~~~~-----~w---iD~~~M~~p~l~~~~~~tgd~~~~ 146 (336)
T PF07470_consen 78 -DLYERTGDEKYKDAAIQAADWLLARRPRTSDGGFWH--NRPYPNQ-----VW---IDGMYMNLPFLAWAGKLTGDPKYL 146 (336)
T ss_dssp -HHHHHH-THHHHHHHHHHHHHHHHTSCBECTGCBEC--TTTSTTE-----EE---TTHHHHHHHHHHHHHHHHTGHHHH
T ss_pred -HHHHHhCCHHHHHHHHHHHHHHHHhCCCCCCCcccc--CCCCCCc-----ee---eccccccHHHHHHHHHHHCCcHHH
Confidence 388999999999999999996654332 2332211 1111111 11 78888 8999999999999776
Q ss_pred HHHHHHHHHHHHHh
Q 008122 297 RMFHSAYLAVQKYF 310 (577)
Q Consensus 297 ~m~~~a~~~i~k~l 310 (577)
+.-.+.+....+++
T Consensus 147 ~~a~~q~~~~~~~~ 160 (336)
T PF07470_consen 147 DEAVRQFRLTRKYL 160 (336)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 65444444455554
No 12
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=96.53 E-value=0.043 Score=61.89 Aligned_cols=234 Identities=19% Similarity=0.142 Sum_probs=129.1
Q ss_pred HhhhccCCCCCCCCccceeeccCCCCCCCCCCccc--cccccchhhhhHHHHhhCCchHHHHHHHHHHHHHhccCCCCCc
Q 008122 177 GRRFLPAFDTPTGLPYAWINLKYGVMENETNETST--SGCGSLILEMGALSRLTGDPIYESAALRALRRLWSMRSSLNLL 254 (577)
Q Consensus 177 adrLlpAFdTptGiP~~~vNl~~g~~~~~~~~t~l--Ae~GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L~~~~~~~gL~ 254 (577)
-|+|+..|-...|+|-..+.... -.+......+ ..+|-..==..++...|+|++..+.++++++.|.+.+...|-+
T Consensus 25 ~d~ll~~~r~~agl~~~~~~~g~--we~~~~~~~~~~~~~g~wl~a~a~~~~~~~D~~l~~~~d~~V~~l~~~Q~~dGYl 102 (520)
T PF07944_consen 25 PDRLLYNFRSHAGLPNFAIAYGG--WEGEFPGWWFRGHDVGKWLEAAAYAYAYTGDPELKAKADEIVDELAAAQQPDGYL 102 (520)
T ss_pred HHHHhhhcCcccCCCCccccCCC--CccCCCCCccCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccCCcee
Confidence 47888888876777755442211 1100111111 2334333334567789999999999999999999988777866
Q ss_pred ceeeecC----CCceecc---cccccCCCchhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCCccccccCCCcce
Q 008122 255 GTTLDVT----TGEWIEY---SSGIGAGVDSFYEYLFKAHILFGKEDFWRMFHSAYLAVQKYFRHGPWYHEADMRNGKAT 327 (577)
Q Consensus 255 ~~~id~~----tG~~~~~---~~~~Ga~~DSyYEYLlK~~iL~g~~~~~~m~~~a~~~i~k~l~~~~~~~~~~~~~g~~~ 327 (577)
+...... ...|... ..++| -.++=|+-.|..+|++..+++-.+..+-+.+.+.. +- .+..
T Consensus 103 ~~~~~~~~~~~~~~w~~~~he~Y~~~----~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~--~~------~~~~- 169 (520)
T PF07944_consen 103 GTYPEERNFNPDDRWAPDMHELYCLG----KLLEGLIDYYEATGNERALDVATKLADWVYRRLSR--LG------PEPG- 169 (520)
T ss_pred cccccccccccccCCCCCccceehHh----HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhcc--CC------HHHh-
Confidence 6555433 3345430 01111 23455677788899987666555555544222111 00 0000
Q ss_pred eccccccccccccch-hhcccccc--chhhHHHHHHH-HHHhCCCC--cEEEccCccccCCCCcCCCChhhH------HH
Q 008122 328 YWQLTSLQAFWPGLQ-VLVGDIAA--ANSSHREFVHV-WKKFGVLP--ERYLLDHLMLHPTEKYYPLRPELA------ES 395 (577)
Q Consensus 328 ~~~~~hL~cF~pG~~-~L~g~~~~--a~~~~~~~~~~-~~~~Gl~P--E~~~~~~~~~~~~~~~Y~LRPE~i------ES 395 (577)
..++.+=.+||. +|. ++.. .++.+..+... .+..|..| .....+ ..+....+-.-|.+| ++
T Consensus 170 ---~~~~~~~~~~i~~~l~-~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d---~~~~~~a~~~~~h~vr~~y~~~g 242 (520)
T PF07944_consen 170 ---QKMGYPEHGGINEALV-RLYEITGDERYLDLAEYFVDQRGFDPYDLAYGQD---HLPGRHANTHIGHAVRAMYLYSG 242 (520)
T ss_pred ---hcccccccchHHHHHH-HHHHHhCCHHHHHHHHHHHHHhCCCCCchhhcCc---cCCCccccceeeEEEEhhhhhhH
Confidence 112223334442 111 1110 11222222222 23456666 332222 122333455666776 47
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHH-hhcccCCCcccc
Q 008122 396 TFYLYQATKDPWYLEVGESIVNSLN-SYTKVDGGFASI 432 (577)
Q Consensus 396 ~fyLyR~TgD~~Yre~gW~if~aie-k~~r~~~Gya~i 432 (577)
.--+|++|||+.|++.+..+|+.+. ++.-+.+|.++-
T Consensus 243 ~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~ 280 (520)
T PF07944_consen 243 AADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSD 280 (520)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCC
Confidence 8889999999999999999999984 566777888877
No 13
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=96.41 E-value=0.018 Score=61.31 Aligned_cols=240 Identities=12% Similarity=0.050 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccCCCcCCCCCCCcccccccccCCCCCCCCCceeeeeccchhhhccCHHHHH----HH
Q 008122 42 KKVHDMFYHAYENYLTHAFPHDELKPLSKSFTDSLSELGNLKLEHLPQHYNGSALTLIESMSSLVIMGNNTEFE----RA 117 (577)
Q Consensus 42 ~~Vk~~f~hAw~~Y~~~Awg~DEL~P~S~~~~d~~~~~G~~~~~~~~~~~~G~glTLVDSLDTL~IMGl~~EF~----~A 117 (577)
+.-+..+.++..-+.++++... .+.+...+...|++. +....-+ .-+-.|=++..++.++-.+++. ++
T Consensus 10 ~~~~~~~~~~~~fw~~~~~d~~-----~gg~~~~l~~~g~~~-~~~k~~~--~~ar~i~~~a~a~~~~~~~~~l~~A~~~ 81 (384)
T cd00249 10 QLAGWLLEDLLPFWLEAGLDRE-----AGGFFECLDRDGQPF-DTDRRLW--LQARQVYCFAVAYLLGWRPEWLEAAEHG 81 (384)
T ss_pred HHHHHHHHHHHHHHHhcCCCCC-----CCCeEEEECCCCCCC-CCCCeEE--EecHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 3344445788888888765432 122222222233321 1000001 1134677888899888666654 44
Q ss_pred HHHHHHhCC----------Cccccccc---c-cchhhhhcccchhhhhccccchhhhccccchHHHHHHHHHHHhhhccC
Q 008122 118 VLWLSENLN----------FDVDARIN---L-FECNIRVLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPA 183 (577)
Q Consensus 118 ~~~v~~~l~----------F~~d~~Vs---v-FETtIR~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpA 183 (577)
.+++.++.. ++.++.+. . .+.-.++|-||+.+|..++++ ..|+.|+++.+.|..-
T Consensus 82 ~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~-----------~~l~~A~~~~~~l~~~ 150 (384)
T cd00249 82 LEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDP-----------EARALAEETIDLLERR 150 (384)
T ss_pred HHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCH-----------HHHHHHHHHHHHHHHH
Confidence 567766542 12233221 1 455678999999999999998 8999999999999987
Q ss_pred CCCCCCCccceeeccCCCCCCCCCCccccccccchhhhhHHHHhhCCchHHHHHHHHHHHHHhcc--CCCCCcceeeecC
Q 008122 184 FDTPTGLPYAWINLKYGVMENETNETSTSGCGSLILEMGALSRLTGDPIYESAALRALRRLWSMR--SSLNLLGTTLDVT 261 (577)
Q Consensus 184 FdTptGiP~~~vNl~~g~~~~~~~~t~lAe~GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L~~~~--~~~gL~~~~id~~ 261 (577)
|-.+.|.-+...+...+..+.......++++ +..|.++|||++|.+.|+++++.+.+.- ...|.+....+.+
T Consensus 151 ~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~a------ll~l~~~tgd~~~~~~A~~l~~~~~~~~~~~~~G~~~e~~~~~ 224 (384)
T cd00249 151 FWEDHPGAFDEADPGTPPYRGSNPHMHLLEA------MLAAYEATGEQKYLDRADEIADLILDRFIDAESGVVREHFDED 224 (384)
T ss_pred hccCCCcccCCCCCCCCCCCCCChhHHHHHH------HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCcccCeEEEEECCC
Confidence 7322332132222211111110001111221 6678899999999999999998887542 2345444433211
Q ss_pred -------CCceecccccccCCCchhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Q 008122 262 -------TGEWIEYSSGIGAGVDSFYEYLFKAHILFGKEDFWRMFHSAYLAVQKYFR 311 (577)
Q Consensus 262 -------tG~~~~~~~~~Ga~~DSyYEYLlK~~iL~g~~~~~~m~~~a~~~i~k~l~ 311 (577)
.+.+ +.-|.... .--.|+..+.++|+++|.+.-.+.++.+.++..
T Consensus 225 ~~~~~~~~~~~----~~Pgh~~e-~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~ 276 (384)
T cd00249 225 WNPYNGDKGRH----QEPGHQFE-WAWLLLRIASRSGQAWLIEKARRLFDLALALGW 276 (384)
T ss_pred CCCCcCcCCCc----CCCchHHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCc
Confidence 1111 11222222 233567888899998898888888888888864
No 14
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=96.17 E-value=0.0078 Score=64.93 Aligned_cols=150 Identities=18% Similarity=0.165 Sum_probs=86.0
Q ss_pred ccchhhhhccccchhhhccccchHHHHHHHHHHHhhhccCCCCC---CCCccceeeccCCC-CCCCCCCccccccccchh
Q 008122 144 GGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAFDTP---TGLPYAWINLKYGV-MENETNETSTSGCGSLIL 219 (577)
Q Consensus 144 GGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpAFdTp---tGiP~~~vNl~~g~-~~~~~~~t~lAe~GTl~L 219 (577)
=++|.||++++++. .-...+|++|+++.+.+...+|+. .||++...+...+. .++ ..+.+. ..+
T Consensus 95 la~l~aye~t~~~~------~~~~~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~~~~~~Kn---a~sN~~---~~~ 162 (370)
T PF03663_consen 95 LALLRAYELTGDQP------SDNPKYLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTNSGYDYKN---AISNGP---AAQ 162 (370)
T ss_dssp HHHHHHHHHH--H-----------HHHHHHHHHHHHHHHTB-SGG-GS-BEEET----TEEEEEE---HHHHHH---HHH
T ss_pred HHHHHHHHhhCCCc------chHHHHHHHHHHHHHHHHHhcCCccCCCCccccccccCCCCCccc---ccchHH---HHH
Confidence 36899999999862 122378999999999999999975 47876532211110 011 011111 222
Q ss_pred hhhHHHHhhCCchHHHHHHHHHHHHHh--cc-CCCCCcceeeecCC-------CceecccccccCCCchhhhhHHHHHHh
Q 008122 220 EMGALSRLTGDPIYESAALRALRRLWS--MR-SSLNLLGTTLDVTT-------GEWIEYSSGIGAGVDSFYEYLFKAHIL 289 (577)
Q Consensus 220 EF~~LS~lTGd~kY~~~a~ra~~~L~~--~~-~~~gL~~~~id~~t-------G~~~~~~~~~Ga~~DSyYEYLlK~~iL 289 (577)
=..+|.++|||.+|.+.|+++++=+.. +. ...|++-..+++.+ .+|+-... .|-.=+.-.|-.
T Consensus 163 laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG-------~~l~a~~~Ly~~ 235 (370)
T PF03663_consen 163 LAARLYRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQG-------VFLGAAAYLYNA 235 (370)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHH-------HHHHHHHHHHHh
Confidence 246899999999999999999997766 22 34578777775544 23332221 344556667778
Q ss_pred cCch-HHHHHHHHHHHHHHHHhhc
Q 008122 290 FGKE-DFWRMFHSAYLAVQKYFRH 312 (577)
Q Consensus 290 ~g~~-~~~~m~~~a~~~i~k~l~~ 312 (577)
++++ .|+++=.+.++++++++..
T Consensus 236 T~~~~~yl~~A~~la~~~~~~~~~ 259 (370)
T PF03663_consen 236 TNDEQTYLDRAEKLADAAINHFFD 259 (370)
T ss_dssp H--H-HHHHHHHHHHHHHHHHHEE
T ss_pred cCCccHHHHHHHHHHHHHHHHhCC
Confidence 8766 8888888888888888543
No 15
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=95.03 E-value=0.28 Score=51.92 Aligned_cols=269 Identities=17% Similarity=0.089 Sum_probs=134.6
Q ss_pred hhhcccchhhhhccccchhhhccccchHHHHHHHHHHHhhhccCC-CCCCCCccceeeccCCCCCCCCCCccccccccch
Q 008122 140 IRVLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAF-DTPTGLPYAWINLKYGVMENETNETSTSGCGSLI 218 (577)
Q Consensus 140 IR~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpAF-dTptGiP~~~vNl~~g~~~~~~~~t~lAe~GTl~ 218 (577)
-|.|=-+=.||. .|++ ..|+.|+...+.|...| |..+|-=+..++-. | +.... ...-+.+ =.+
T Consensus 24 ~R~~~~fa~a~~-~g~~-----------~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~-~-~~~~~-~~~Y~~a-f~l 87 (346)
T PF07221_consen 24 ARQLYTFARAYR-LGRP-----------EYLELAEHGFDFLRKHFRDPEYGGWYRSLDDG-G-PLDPQ-KDLYDQA-FAL 87 (346)
T ss_dssp HHHHHHHHHHHH-TTSH-----------HHHHHHHHHHHHHHHTTBTTTTSSBSSEEETT-E-EEE---EEHHHHH-HHH
T ss_pred HHHHHHHHHHHh-cCch-----------hHHHHHHHHHHHHHHhcccCCCCCEEEEeCCC-C-CCccc-cchHHHH-HHH
Confidence 354444555666 5665 78999999999999777 56656555555422 2 11111 1111111 123
Q ss_pred hhhhHHHHhhCCchHHHHHHHHHHHHHhcc--CCCCCcceeeecCCCceecccccccCCCch---hhhhHHHHHHhcCch
Q 008122 219 LEMGALSRLTGDPIYESAALRALRRLWSMR--SSLNLLGTTLDVTTGEWIEYSSGIGAGVDS---FYEYLFKAHILFGKE 293 (577)
Q Consensus 219 LEF~~LS~lTGd~kY~~~a~ra~~~L~~~~--~~~gL~~~~id~~tG~~~~~~~~~Ga~~DS---yYEYLlK~~iL~g~~ 293 (577)
+-+.. ++.||++.|.+.|+++++.|.+.- ...|++....++.-... .+..+ ..|-++..+-+++++
T Consensus 88 ~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~--------r~~n~~mhl~eA~l~l~~~~~~~ 158 (346)
T PF07221_consen 88 LALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPP--------RGQNPHMHLLEAFLALYEATGDP 158 (346)
T ss_dssp HHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCB--------EEHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccC--------CCCChhHHHHHHHHHHHHhccCH
Confidence 44455 689999999999999999987652 22455554444321111 01122 367777778888888
Q ss_pred HHHHHHHHHHHHHHHHhhc-CCC----cccccc---CCCcceeccccccc--cccccchh-----h------cccccc-c
Q 008122 294 DFWRMFHSAYLAVQKYFRH-GPW----YHEADM---RNGKATYWQLTSLQ--AFWPGLQV-----L------VGDIAA-A 351 (577)
Q Consensus 294 ~~~~m~~~a~~~i~k~l~~-~~~----~~~~~~---~~g~~~~~~~~hL~--cF~pG~~~-----L------~g~~~~-a 351 (577)
.+++.-.+.++.+..++.. ... ++..+. ..+... +-+. .+-||-.. | .+.-.. -
T Consensus 159 ~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~----d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~ 234 (346)
T PF07221_consen 159 RYLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGD----DTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDW 234 (346)
T ss_dssp HHHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTT----HSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccc----cccccCccCCchhHHHHHHHHHHHHhcccccHHH
Confidence 8877777777777654432 111 111111 001000 0000 01233211 1 010000 0
Q ss_pred hhhHHHHHHHHHHhCCCCcEEE----ccC-ccccCCCCcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHHhhcccC
Q 008122 352 NSSHREFVHVWKKFGVLPERYL----LDH-LMLHPTEKYYPLRPELAESTFYLYQATKDPWYLEVGESIVNSLNSYTKVD 426 (577)
Q Consensus 352 ~~~~~~~~~~~~~~Gl~PE~~~----~~~-~~~~~~~~~Y~LRPE~iES~fyLyR~TgD~~Yre~gW~if~aiek~~r~~ 426 (577)
.+........-...|+-||.-. .+. +.....++..---.|++-.+..+|++|||+.|.++.-++++-+.++...+
T Consensus 235 ~~~a~~l~~~~~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~~~~~~~~~d~ 314 (346)
T PF07221_consen 235 LERARRLFDFALEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVWDYIFRHFIDP 314 (346)
T ss_dssp HHHHHHHHHHHHHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTB-T
T ss_pred HHHHHHHHHHHHHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhCCCC
Confidence 0000111111123455555421 111 11111122222246999999999999999999999999999999998553
Q ss_pred --CCccccccccc
Q 008122 427 --GGFASIRDVTT 437 (577)
Q Consensus 427 --~Gya~i~dV~~ 437 (577)
+++-..-|-..
T Consensus 315 ~~G~W~~~l~~dg 327 (346)
T PF07221_consen 315 EYGEWFDYLDRDG 327 (346)
T ss_dssp TTSSB-SEE-TTS
T ss_pred CCCeeEeeECCCC
Confidence 55555544433
No 16
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=95.01 E-value=0.31 Score=55.24 Aligned_cols=171 Identities=19% Similarity=0.181 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHhCCCcc-cc-----------cccccchhhhhcccchhhhhccccchhhhccccchHHHHHHHHHHHh
Q 008122 111 NTEFERAVLWLSENLNFDV-DA-----------RINLFECNIRVLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGR 178 (577)
Q Consensus 111 ~~EF~~A~~~v~~~l~F~~-d~-----------~VsvFETtIR~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLad 178 (577)
.+-|++|++-|.+++-+.. ++ .....|----++||+++---..... .....+...++.|++|++
T Consensus 309 ~~~~~~a~~~i~~~l~~~s~~~~~~v~~~~~~~~~~~~~hL~cF~gG~~aLg~~~~~~----~~~~~~~~~~~~a~~l~~ 384 (522)
T PTZ00470 309 RRLFVESAKGIIEHLYKRSPKGLTYIAEMDGGSLTNKMEHLACFAGGMFALGAAINIT----PDDEKSARYMEVGEEVTK 384 (522)
T ss_pred HHHHHHHHHHHHHHhcccCCCCcEEEeeccCCcCcchhhhhhhhccchhhhccccccc----ccccccHHHHHHHHHHHH
Confidence 4568889888888764431 11 1122333345677766533210000 000112467899999999
Q ss_pred hhccCCC-CCCCCccceeeccCCCCCCCCCCcccccccc--chhh----hhHHHHhhCCchHHHHHHHHHHHHHhccCCC
Q 008122 179 RFLPAFD-TPTGLPYAWINLKYGVMENETNETSTSGCGS--LILE----MGALSRLTGDPIYESAALRALRRLWSMRSSL 251 (577)
Q Consensus 179 rLlpAFd-TptGiP~~~vNl~~g~~~~~~~~t~lAe~GT--l~LE----F~~LS~lTGd~kY~~~a~ra~~~L~~~~~~~ 251 (577)
-..-.+. +||||.--.+++..+...-... . .-+. |--| .-+|-|+||||+|.+.+-++++.|-+.-...
T Consensus 385 tC~~~Y~~~~tGl~PE~~~~~~~~~~~~~~---~-~d~~Y~LRPE~iES~fylyR~TgD~~yre~gW~~f~ai~k~~rt~ 460 (522)
T PTZ00470 385 TCYETYATSPTGLGPEIFHFDPNSGDISPN---V-HDSHYILRPETVESIFILYRLTGDPKYREWAWKIFQAIEKHCKTE 460 (522)
T ss_pred HHHHHHHhcccCCCCceEEeccCccccccc---c-CCCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Confidence 9888886 8999964555543321000000 0 0001 1122 2368999999999999999999997753332
Q ss_pred CCcceeeecCCCceecccccccCCCchhh--hhHHHHHHhcCchH
Q 008122 252 NLLGTTLDVTTGEWIEYSSGIGAGVDSFY--EYLFKAHILFGKED 294 (577)
Q Consensus 252 gL~~~~id~~tG~~~~~~~~~Ga~~DSyY--EYLlK~~iL~g~~~ 294 (577)
.-+...-|+.+.. ....-...||+ |-|-=.|+|+.+++
T Consensus 461 ~Gya~i~dV~~~~-----~~~~D~MeSFflaETLKYlYLlFsd~~ 500 (522)
T PTZ00470 461 NGYSGLKNVLTVH-----PQQDDFQESFFLAETLKYLYLLFQPDH 500 (522)
T ss_pred cccccccccCCCC-----CCcCCcccchhHHHHHHHHHheecCcc
Confidence 2233334554311 11223456776 66655688887753
No 17
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=94.91 E-value=0.41 Score=49.62 Aligned_cols=176 Identities=17% Similarity=0.140 Sum_probs=91.0
Q ss_pred hhhccCHHHHHHHHHHHHHhCCCcccccccccchhhhhcccchhhhhccccchhhhccccchHHHHHHHHHHHhhhccCC
Q 008122 105 LVIMGNNTEFERAVLWLSENLNFDVDARINLFECNIRVLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAF 184 (577)
Q Consensus 105 L~IMGl~~EF~~A~~~v~~~l~F~~d~~VsvFETtIR~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpAF 184 (577)
|.-+|-.++.++.++.+.+.. ..+...+++--..=++=+|+..|.. +|+ .+++.|++++++|+..-
T Consensus 53 l~~~~~~~~~~~~~~~~~~~~--~~~~~~dl~~G~aG~~~~ll~l~~~-~~~-----------~~l~~a~~~~~~l~~~~ 118 (321)
T cd04791 53 LIELGHPARAKALFDTLLDEP--SANLNIDLASGLAGIGLALLYFART-GDP-----------ALLEAAAKIAELLAEAL 118 (321)
T ss_pred HHHcCCHHHHHHHHHHHhccc--ccccCCccccchHHHHHHHHHHHhc-CCh-----------HHHHHHHHHHHHHHHHh
Confidence 333565666666665553321 1112222222222222234444555 565 89999999999987643
Q ss_pred C-CCCCCccceeeccCCCCCCCCCCccccccccchhhhhHHHHhhCCchHHHHHHHHHHHHHhccCC--CCCcceeeecC
Q 008122 185 D-TPTGLPYAWINLKYGVMENETNETSTSGCGSLILEMGALSRLTGDPIYESAALRALRRLWSMRSS--LNLLGTTLDVT 261 (577)
Q Consensus 185 d-TptGiP~~~vNl~~g~~~~~~~~t~lAe~GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L~~~~~~--~gL~~~~id~~ 261 (577)
. ...+.. +.+ +..... .-..+...+.+=+..|.+.|||++|.+.|.++.+.+.+.... .|.+. ..
T Consensus 119 ~~~~~~~~--~~~---~~~~~~---G~~hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~----~~ 186 (321)
T cd04791 119 ERGDPALL--WPD---FDRVDH---GLLHGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVDDGGLLQ----VD 186 (321)
T ss_pred hccccccc--ccc---CCCCCC---ccccCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCCCCceE----cC
Confidence 2 222221 111 111100 011222223344778999999999999999999987665321 22221 11
Q ss_pred CCceecccccccCCCchhhhhHHHHHHhcCchHHHHHHHHHHHHHHH
Q 008122 262 TGEWIEYSSGIGAGVDSFYEYLFKAHILFGKEDFWRMFHSAYLAVQK 308 (577)
Q Consensus 262 tG~~~~~~~~~Ga~~DSyYEYLlK~~iL~g~~~~~~m~~~a~~~i~k 308 (577)
.+. .....|-.|.-..---|+|.+-.++++++.+.-.++.+.+.+
T Consensus 187 ~~~--~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~ 231 (321)
T cd04791 187 EGA--RLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALS 231 (321)
T ss_pred CCC--ccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 110 011223333334446677888889998777755555554443
No 18
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=92.72 E-value=5.7 Score=47.23 Aligned_cols=176 Identities=17% Similarity=0.136 Sum_probs=95.6
Q ss_pred hhhhHHHHhhCCchHHHHHHHHHHHHHhccCC--CCCcceeeecCCCceecccccccCCCchhhhhHHHHHHhcCchHHH
Q 008122 219 LEMGALSRLTGDPIYESAALRALRRLWSMRSS--LNLLGTTLDVTTGEWIEYSSGIGAGVDSFYEYLFKAHILFGKEDFW 296 (577)
Q Consensus 219 LEF~~LS~lTGd~kY~~~a~ra~~~L~~~~~~--~gL~~~~id~~tG~~~~~~~~~Ga~~DSyYEYLlK~~iL~g~~~~~ 296 (577)
+=+..|.+.|+++.|.+.|.++.+.+.+.... .+.. +.. .....++.-|.-..--.|++.+..++++.+.
T Consensus 594 ~~Ll~l~~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~~-----~~~---~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~ 665 (825)
T cd04792 594 LVLLSLYELFLSERFLDLALKCGDHLLENASNEDGGIG-----PAE---QPNLTGFAHGASGIAWALLRLYKVTGDSRYL 665 (825)
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHhhhhccCCcc-----ccc---ccccccccccHHHHHHHHHHHHHHcCcHHHH
Confidence 33557889999999999999999998764322 1221 110 0123455555566667899999999998887
Q ss_pred HHHHHHHHHHHHHhh--cCCCccccccCCCcceeccccccccc---cccchhh---ccccc-cchhhHH-HH----HHHH
Q 008122 297 RMFHSAYLAVQKYFR--HGPWYHEADMRNGKATYWQLTSLQAF---WPGLQVL---VGDIA-AANSSHR-EF----VHVW 362 (577)
Q Consensus 297 ~m~~~a~~~i~k~l~--~~~~~~~~~~~~g~~~~~~~~hL~cF---~pG~~~L---~g~~~-~a~~~~~-~~----~~~~ 362 (577)
+...++++...++.. ...|.. + .+ .....++ .+|.... ..... ....... .. ..+.
T Consensus 666 ~~a~~~l~~~~~~~~~~~~~w~~--~--~~------~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~ 735 (825)
T cd04792 666 KLAHKALKYERRLFSEEGWNWPR--K--DG------NSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTL 735 (825)
T ss_pred HHHHHHHHHHHHhcCHhhcCCCC--c--Cc------CCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 776666654433321 122320 0 00 0111223 2333211 01110 0011111 01 1111
Q ss_pred HHhCCCCcEEEccCccccCCCCcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHHhhccc
Q 008122 363 KKFGVLPERYLLDHLMLHPTEKYYPLRPELAESTFYLYQATKDPWYLEVGESIVNSLNSYTKV 425 (577)
Q Consensus 363 ~~~Gl~PE~~~~~~~~~~~~~~~Y~LRPE~iES~fyLyR~TgD~~Yre~gW~if~aiek~~r~ 425 (577)
..| .+.... ----.+-.+|.+.++++.|+|++|++.+-..++.+-.....
T Consensus 736 -~~~-~~~~~s-----------lCHG~~Gil~~ll~~~~~~~~~~~~~~a~~~~~~l~~~~~~ 785 (825)
T cd04792 736 -KEG-FGNNHS-----------LCHGDLGNLEILLYAAKAFGDEKLQELANSLAIKVLSQGKK 785 (825)
T ss_pred -Hhc-CCCCCe-----------ecCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 122 111111 12234458899999999999999999999998887655544
No 19
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=92.43 E-value=0.73 Score=47.71 Aligned_cols=128 Identities=20% Similarity=0.034 Sum_probs=78.6
Q ss_pred ccchhhhhccccchhhhccccchHHHHHHHHHHHhhhccCCCC-CCCCccceeeccCCCCCCCCCCccccccccchhhhh
Q 008122 144 GGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAFDT-PTGLPYAWINLKYGVMENETNETSTSGCGSLILEMG 222 (577)
Q Consensus 144 GGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpAFdT-ptGiP~~~vNl~~g~~~~~~~~t~lAe~GTl~LEF~ 222 (577)
=.|+..|..++|+ .+++.|+++.+.++..|.. +.|.+. .+.+..... .-..+...+.+=+.
T Consensus 146 ~~L~~l~~~t~d~-----------~~l~~A~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~---~wchG~aGi~~~l~ 207 (321)
T cd04791 146 LFLLRLYKATGDS-----------RYLELAEEALDKELARAVVDDGGLLQ----VDEGARLLP---YLCSGSAGLGLLML 207 (321)
T ss_pred HHHHHHHHHHCCH-----------HHHHHHHHHHHHHHHhhccCCCCceE----cCCCCccCc---ccCCCcHHHHHHHH
Confidence 3467778888887 8999999999999988864 344332 111111111 11233334456667
Q ss_pred HHHHhhCCchHHHHHHHHHHHHHhccCCCCCcceeeecCCCceecccccccCCCchhhhhHHHHHHhcCchHHHHHHHHH
Q 008122 223 ALSRLTGDPIYESAALRALRRLWSMRSSLNLLGTTLDVTTGEWIEYSSGIGAGVDSFYEYLFKAHILFGKEDFWRMFHSA 302 (577)
Q Consensus 223 ~LS~lTGd~kY~~~a~ra~~~L~~~~~~~gL~~~~id~~tG~~~~~~~~~Ga~~DSyYEYLlK~~iL~g~~~~~~m~~~a 302 (577)
+|.++|+|++|.+.++++.+.+++... .+..+..... .-.+.|+..+-.++++++++ .
T Consensus 208 ~l~~~~~d~~~~~~a~~~~~~~~~~~~-----------~~~~lchG~~-------G~~~~l~~~~~~~~~~~~~~----~ 265 (321)
T cd04791 208 RLEAITGDKRWRDEADGIAHAALSSCY-----------ANPGLFSGTA-------GLGAHLNDLAAEGDNALYKA----A 265 (321)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhhhc-----------cCccccCCcH-------hHHHHHHhhcccccChHHHH----H
Confidence 889999999999999999998875421 0111222222 34577777777788865444 4
Q ss_pred HHHHHHHhh
Q 008122 303 YLAVQKYFR 311 (577)
Q Consensus 303 ~~~i~k~l~ 311 (577)
...+.+++.
T Consensus 266 ~~~~~~~~~ 274 (321)
T cd04791 266 AERLALYLI 274 (321)
T ss_pred HHHHHHHhc
Confidence 444444443
No 20
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=92.24 E-value=2.7 Score=44.45 Aligned_cols=234 Identities=18% Similarity=0.124 Sum_probs=122.4
Q ss_pred hhhhHHHHhhCCchHHHHHHHHHHHHHhcc--CCCCCcceeeecCCCceecccccccCCCchhhhhHHHHHHhcCchHHH
Q 008122 219 LEMGALSRLTGDPIYESAALRALRRLWSMR--SSLNLLGTTLDVTTGEWIEYSSGIGAGVDSFYEYLFKAHILFGKEDFW 296 (577)
Q Consensus 219 LEF~~LS~lTGd~kY~~~a~ra~~~L~~~~--~~~gL~~~~id~~tG~~~~~~~~~Ga~~DSyYEYLlK~~iL~g~~~~~ 296 (577)
==|..+.+ +|+|.|.++|++.++.|.+.- ...|.+-..++ .|..+... .....++|.=+-+=.+..+|++++.
T Consensus 28 ~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~--~~~~~~~~--~~~Y~~af~l~ala~~~~tg~~~~~ 102 (346)
T PF07221_consen 28 YTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLD--DGGPLDPQ--KDLYDQAFALLALAEARATGDPEAL 102 (346)
T ss_dssp HHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEE--TTEEEE----EEHHHHHHHHHHHHHHHCTT-TTHH
T ss_pred HHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeC--CCCCCccc--cchHHHHHHHHHHHHHHHhCChhHH
Confidence 34667778 899999999999999998653 23354433343 22222211 1122234444444446778999988
Q ss_pred HHHHHHHHHHHHHhhcC--CCccccccCCCcce---eccccccccccccchhhc---ccc---ccchhhHHHHH-HHH-H
Q 008122 297 RMFHSAYLAVQKYFRHG--PWYHEADMRNGKAT---YWQLTSLQAFWPGLQVLV---GDI---AAANSSHREFV-HVW-K 363 (577)
Q Consensus 297 ~m~~~a~~~i~k~l~~~--~~~~~~~~~~g~~~---~~~~~hL~cF~pG~~~L~---g~~---~~a~~~~~~~~-~~~-~ 363 (577)
++=.++++.|.+++... ..+........... ...|.-+.++ ++|. |+. +.|.+....+. .++ .
T Consensus 103 ~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~----l~l~~~~~~~~~~~~a~~l~~~~~~~f~~~ 178 (346)
T PF07221_consen 103 ELAEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPHMHLLEAF----LALYEATGDPRYLDRAEELLDLFLDRFADP 178 (346)
T ss_dssp HHHHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTTCHHC
T ss_pred HHHHHHHHHHHHHhcccccCcceeccCCccccCCCCChhHHHHHHH----HHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999999987543 22322111111111 1112212222 2221 111 11111111111 122 2
Q ss_pred HhCCCCcEEEccCccccCCCC-----cCCCCh-hhHHHHHHHHHhc-----CChhHHHHHHHHHHHHHhhcccC-CC-cc
Q 008122 364 KFGVLPERYLLDHLMLHPTEK-----YYPLRP-ELAESTFYLYQAT-----KDPWYLEVGESIVNSLNSYTKVD-GG-FA 430 (577)
Q Consensus 364 ~~Gl~PE~~~~~~~~~~~~~~-----~Y~LRP-E~iES~fyLyR~T-----gD~~Yre~gW~if~aiek~~r~~-~G-ya 430 (577)
..|..||.|.-+-........ .+..-| =.+|+.++|.++- +++.|.+.+.+++....++.-.+ +| +-
T Consensus 179 ~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~~l~~~~~~~G~d~~~gG~~ 258 (346)
T PF07221_consen 179 ESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLERARRLFDFALEHGWDREGGGLF 258 (346)
T ss_dssp CTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHHHHHHHHHHHHHHHBSTTTSSB-
T ss_pred ccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHheEecCCCeEE
Confidence 468999998654321111111 111222 4799999998887 89999999999999887766544 33 22
Q ss_pred ccccccccccCCcchhHHHHHHhHHHHHhcc
Q 008122 431 SIRDVTTMQLEDHQHSFFLAETCKYLYLLFD 461 (577)
Q Consensus 431 ~i~dV~~~~~~D~meSFflAETLKYLYLLFs 461 (577)
..-|.......+..--.--+|.||=++.+..
T Consensus 259 ~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~ 289 (346)
T PF07221_consen 259 YSVDRDGKPPDRSKRWWPQAEALKALLAAYE 289 (346)
T ss_dssp SEEETTS-BSST-EEHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCccccCccccHHHHHHHHHHHHHh
Confidence 2223333333333333445898887777763
No 21
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=90.05 E-value=1 Score=47.53 Aligned_cols=92 Identities=17% Similarity=0.094 Sum_probs=54.6
Q ss_pred hhhhhccccchhhhccccchHHHHHHHHHHHhhhccC-CCCCCCCccceeeccCCCCCCCCCCccccccccchhhh-hHH
Q 008122 147 VSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPA-FDTPTGLPYAWINLKYGVMENETNETSTSGCGSLILEM-GAL 224 (577)
Q Consensus 147 LSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpA-FdTptGiP~~~vNl~~g~~~~~~~~t~lAe~GTl~LEF-~~L 224 (577)
+-.|.+++|+ .+++.|.+.++.++.. +.++.|-... ..........+.--|.++| .+.
T Consensus 77 ~~~y~~t~d~-----------~y~~~~~~~a~~~l~~~~~~~~G~~~~---------~~~~~~~~wiD~~~M~~p~l~~~ 136 (336)
T PF07470_consen 77 LDLYERTGDE-----------KYKDAAIQAADWLLARRPRTSDGGFWH---------NRPYPNQVWIDGMYMNLPFLAWA 136 (336)
T ss_dssp HHHHHHH-TH-----------HHHHHHHHHHHHHHHTSCBECTGCBEC---------TTTSTTEEETTHHHHHHHHHHHH
T ss_pred HHHHHHhCCH-----------HHHHHHHHHHHHHHHhCCCCCCCcccc---------CCCCCCceeeccccccHHHHHHH
Confidence 5589999988 8899999999966644 4445554322 0111122233322223443 467
Q ss_pred HHhhCCchHHHHHHHHHHHHHhc-c-CCCCCcceee
Q 008122 225 SRLTGDPIYESAALRALRRLWSM-R-SSLNLLGTTL 258 (577)
Q Consensus 225 S~lTGd~kY~~~a~ra~~~L~~~-~-~~~gL~~~~i 258 (577)
+++|||++|.+.|.+-++...+. . ...||+-...
T Consensus 137 ~~~tgd~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~ 172 (336)
T PF07470_consen 137 GKLTGDPKYLDEAVRQFRLTRKYLYDPETGLYYHGY 172 (336)
T ss_dssp HHHHTGHHHHHHHHHHHHHHHHHHB-TTTSSBESEE
T ss_pred HHHHCCcHHHHHHHHHHHHHHHhccCCCCCceeecc
Confidence 99999999999887766666543 2 2345553333
No 22
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=90.01 E-value=14 Score=39.26 Aligned_cols=256 Identities=18% Similarity=0.151 Sum_probs=124.4
Q ss_pred HHHHHHHHHhCCCc-ccccccccchhhhhcccchhhhhccccchhhhccccchHHHHHHHHHHHhhhccCCCCC-CCCcc
Q 008122 115 ERAVLWLSENLNFD-VDARINLFECNIRVLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAFDTP-TGLPY 192 (577)
Q Consensus 115 ~~A~~~v~~~l~F~-~d~~VsvFETtIR~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpAFdTp-tGiP~ 192 (577)
+.|++.+...+... .+..+++|.-..=++=-|+..|..++|+ .+++.|.+.+++++.+...+ ...++
T Consensus 29 ~~a~~~i~~~~~~~~~~~~~~~~~G~aGi~~~l~~l~~~~~d~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (343)
T cd04794 29 SWALEYIKASLRAIPDDRRISFLCGNAGVYAVGAAVYHYLKDE-----------DEVDEFLSKFLQLLESVVSPDSGLPD 97 (343)
T ss_pred HHHHHHHHHHHhhcccccCCCccCCcHHHHHHHHHHHHHhcCh-----------HHHHHHHHHHHHHHHHHhhcccCCch
Confidence 45555554433221 2455666665554444455666777776 78889999888887654211 10000
Q ss_pred ceeeccCCCCCCCCCCccccccccchhhhhHHHHhhCCc-hHHHHHHHHHHHHHhc-cCC-C---CCcceeeecCCCcee
Q 008122 193 AWINLKYGVMENETNETSTSGCGSLILEMGALSRLTGDP-IYESAALRALRRLWSM-RSS-L---NLLGTTLDVTTGEWI 266 (577)
Q Consensus 193 ~~vNl~~g~~~~~~~~t~lAe~GTl~LEF~~LS~lTGd~-kY~~~a~ra~~~L~~~-~~~-~---gL~~~~id~~tG~~~ 266 (577)
+ .+.+.....+=+..|-+.|++. ...+.+.++.+.+.+. +.. . ...|... .|.
T Consensus 98 ---d-------------~l~G~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~-----~~~ 156 (343)
T cd04794 98 ---E-------------LLYGRAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMY-----EWH 156 (343)
T ss_pred ---h-------------hhccHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCccc-----ccc
Confidence 1 1222222233366777888843 3445556655554332 111 1 1112111 111
Q ss_pred cc-cccccCCCchhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhc-CCCccccccCCCcceeccccccccc---cccc
Q 008122 267 EY-SSGIGAGVDSFYEYLFKAHILFGKEDFWRMFHSAYLAVQKYFRH-GPWYHEADMRNGKATYWQLTSLQAF---WPGL 341 (577)
Q Consensus 267 ~~-~~~~Ga~~DSyYEYLlK~~iL~g~~~~~~m~~~a~~~i~k~l~~-~~~~~~~~~~~g~~~~~~~~hL~cF---~pG~ 341 (577)
+. ..++.=|.-..-=-|++.+..++++++.+...++++-+.++... +.|....+ ..+ -..+.++ .||.
T Consensus 157 ~~~~~G~aHG~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~--~~~-----~~~~~~wChG~~Gi 229 (343)
T cd04794 157 GKEYLGAAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLG--NRK-----RDRLVQWCHGAPGI 229 (343)
T ss_pred CceecchhhhHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhccCCCCCCccC--CCC-----CCccccccCCCchH
Confidence 11 12221122222233777777778888888777777766665322 22221111 000 1122233 4554
Q ss_pred hhhc---cccccchhhH-----HHHHHHHHHhCCCCcEEEccCccccCCCCcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 008122 342 QVLV---GDIAAANSSH-----REFVHVWKKFGVLPERYLLDHLMLHPTEKYYPLRPELAESTFYLYQATKDPWYLEVGE 413 (577)
Q Consensus 342 ~~L~---g~~~~a~~~~-----~~~~~~~~~~Gl~PE~~~~~~~~~~~~~~~Y~LRPE~iES~fyLyR~TgD~~Yre~gW 413 (577)
..+. ..+.. .+.. .....+|+ .|+.-....+-.|. +=..+.+..+|+.|+|++|+++|-
T Consensus 230 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~g~~~~~~~lCHG~-----------~G~~~~lL~~~~~~~~~~~~~~a~ 296 (343)
T cd04794 230 VYLLAKAYLVFK-EEQYLEAAIKCGELIWK-RGLLKKGPGLCHGI-----------AGNAYAFLLLYRLTGDLKYLYRAC 296 (343)
T ss_pred HHHHHHHHHHhC-CHHHHHHHHHHHHHHHH-hCCccCCCccccCc-----------cchHHHHHHHHHHhCcHHHHHHHH
Confidence 4221 11110 0011 11123443 34432112221121 235789999999999999999999
Q ss_pred HHHHHHHhh
Q 008122 414 SIVNSLNSY 422 (577)
Q Consensus 414 ~if~aiek~ 422 (577)
.+.+.+-+.
T Consensus 297 ~~~~~~~~~ 305 (343)
T cd04794 297 KFAEFLINY 305 (343)
T ss_pred HHHHHHhcc
Confidence 988877554
No 23
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=88.67 E-value=1.4 Score=48.02 Aligned_cols=144 Identities=18% Similarity=0.219 Sum_probs=87.2
Q ss_pred hhcccchhhhhccccchhhhccccchHHHHHHHHHHHhhhccCC-CCCCCCc----cceeeccCCCCCCC-CCCcccccc
Q 008122 141 RVLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAF-DTPTGLP----YAWINLKYGVMENE-TNETSTSGC 214 (577)
Q Consensus 141 R~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpAF-dTptGiP----~~~vNl~~g~~~~~-~~~t~lAe~ 214 (577)
-.+-.+|.+|+.+++. ..|++|.++|+.++.-| |..+|.= -...|+.++..+.. .+.. -=|-
T Consensus 178 Hl~EA~LA~~e~~~~~-----------~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg~~~ePGH-~fEW 245 (388)
T COG2942 178 HLLEAMLAAYEATGEK-----------TWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRGRGIEPGH-QFEW 245 (388)
T ss_pred HHHHHHHHHHhccCch-----------hHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCcccCCCCCch-HHHH
Confidence 4455689999999997 89999999999999988 6788763 34445555543211 1111 1234
Q ss_pred ccchhhhhHHHHhhCCchHHHHHHHHHHHHHhcc--CCC-CCcc------eeeecCCCceecccccccCCCchhhhhHHH
Q 008122 215 GSLILEMGALSRLTGDPIYESAALRALRRLWSMR--SSL-NLLG------TTLDVTTGEWIEYSSGIGAGVDSFYEYLFK 285 (577)
Q Consensus 215 GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L~~~~--~~~-gL~~------~~id~~tG~~~~~~~~~Ga~~DSyYEYLlK 285 (577)
+.|+|. +.++.|+..=..+|.+.+....... ... |++. ...|+..-.|... |+ +|
T Consensus 246 ~~Lll~---~a~~~~~~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~------------E~-l~ 309 (388)
T COG2942 246 AWLLLD---IARRRGRAWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWPQT------------EA-LK 309 (388)
T ss_pred HHHHHH---HHHHhchhHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhChHH------------HH-HH
Confidence 444443 4566677666677777666554321 112 2221 1122223333322 55 56
Q ss_pred HHHhc----C-chHHHHHHHHHHHHHHHHhhc
Q 008122 286 AHILF----G-KEDFWRMFHSAYLAVQKYFRH 312 (577)
Q Consensus 286 ~~iL~----g-~~~~~~m~~~a~~~i~k~l~~ 312 (577)
..+++ | ++.|++.|..+.+...+|+..
T Consensus 310 AA~ala~~~~~~~~y~~~~~R~~~~~~~hl~d 341 (388)
T COG2942 310 AAVALAETTGARERYWQWYARAWDYLWWHLDD 341 (388)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHhcCC
Confidence 65543 4 567999999999999999853
No 24
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=88.49 E-value=1.3 Score=49.15 Aligned_cols=125 Identities=22% Similarity=0.233 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhCCCc--c-c-------c---------cccccchhhhhcccchh--hhhccccchhhhccccchHHH
Q 008122 111 NTEFERAVLWLSENLNFD--V-D-------A---------RINLFECNIRVLGGLVS--AHILATDSANRLVQGSYKNQL 169 (577)
Q Consensus 111 ~~EF~~A~~~v~~~l~F~--~-d-------~---------~VsvFETtIR~LGGLLS--AY~Ls~d~~~~~~~~~y~~~L 169 (577)
.+-|++|++-|.+++-+. . + + ....++----++||+|+ |..+ +++ ..
T Consensus 233 ~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~-~~~-----------~~ 300 (452)
T PF01532_consen 233 RDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLF-NDE-----------GD 300 (452)
T ss_dssp HHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTT-TCH-----------HH
T ss_pred HHHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhccc-Cch-----------hH
Confidence 667889999998887654 1 1 1 22234444556788543 4444 333 78
Q ss_pred HHHHHHHHhhhccCCC-CCCCCccceeeccCCCCC---CC-CCCcccc-cccc--chhhh----hHHHHhhCCchHHHHH
Q 008122 170 LTLAEDLGRRFLPAFD-TPTGLPYAWINLKYGVME---NE-TNETSTS-GCGS--LILEM----GALSRLTGDPIYESAA 237 (577)
Q Consensus 170 L~kA~dLadrLlpAFd-TptGiP~~~vNl~~g~~~---~~-~~~t~lA-e~GT--l~LEF----~~LS~lTGd~kY~~~a 237 (577)
++.|.+|.+--.-.++ +|||+.--.+++...... ++ .....+. .-+. +--|. -+|-|+||||+|.+.+
T Consensus 301 ~~~A~~l~~~C~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~g 380 (452)
T PF01532_consen 301 LELAEELTETCYWLYKSTPTGLGPEIFSFDPCEENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRATGDPKYREWG 380 (452)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSS--SEEEESCSCG--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH-BHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCceEEEeeccccccccchhhcccccccccccccchhhhhhheeEEEEEcCCchHHHHH
Confidence 9999999999888887 689998777777542100 00 0000000 1111 11233 4799999999999999
Q ss_pred HHHHHHHHhc
Q 008122 238 LRALRRLWSM 247 (577)
Q Consensus 238 ~ra~~~L~~~ 247 (577)
-.+++.|.+.
T Consensus 381 w~if~ai~k~ 390 (452)
T PF01532_consen 381 WDIFQAIEKY 390 (452)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 25
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.45 E-value=0.84 Score=51.06 Aligned_cols=73 Identities=27% Similarity=0.354 Sum_probs=55.9
Q ss_pred hcccchhhhhccccchhhhccccchHHHHHHHHHHHhhhccCCCCCCCCccceeeccCCCCCCCCCCccccccccchhhh
Q 008122 142 VLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAFDTPTGLPYAWINLKYGVMENETNETSTSGCGSLILEM 221 (577)
Q Consensus 142 ~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpAFdTptGiP~~~vNl~~g~~~~~~~~t~lAe~GTl~LEF 221 (577)
.+-|++.+|.+||-. .+|+-+..|||-+..-|+.-++ -+.| ..|=+-+-|.+
T Consensus 136 Lieg~va~~qaTGkr-----------~lldV~~rlADhi~tvfgp~~~-------q~~g----------~~gH~eielAl 187 (589)
T COG3533 136 LIEGGVAAHQATGKR-----------RLLDVVCRLADHIATVFGPEED-------QVPG----------YCGHPEIELAL 187 (589)
T ss_pred HHhhhhHHHHhhCcc-----------hHHHHHHHHHHhhhhhcCcccc-------cccc----------ccCCCchhHHH
Confidence 567899999999987 9999999999999998873322 1111 22334456778
Q ss_pred hHHHHhhCCchHHHHHHHHHH
Q 008122 222 GALSRLTGDPIYESAALRALR 242 (577)
Q Consensus 222 ~~LS~lTGd~kY~~~a~ra~~ 242 (577)
..|.++|||++|.++|++-..
T Consensus 188 ~~Ly~~Tg~~rYL~LA~~Fi~ 208 (589)
T COG3533 188 AELYRLTGDQRYLDLARRFIH 208 (589)
T ss_pred HHHHHHhcChHHHHHHHHHHH
Confidence 899999999999999976443
No 26
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=86.02 E-value=20 Score=36.86 Aligned_cols=182 Identities=14% Similarity=0.069 Sum_probs=92.5
Q ss_pred ccCHHHHHHHHHHHHHhCCCc----ccccccccchhhhhcccchhhhhccccchhhhccccchHHHHHHHHHHHhhhccC
Q 008122 108 MGNNTEFERAVLWLSENLNFD----VDARINLFECNIRVLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPA 183 (577)
Q Consensus 108 MGl~~EF~~A~~~v~~~l~F~----~d~~VsvFETtIR~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpA 183 (577)
.+..+..+.+.+.+....+.. .+...++.--..=++-.|+..|..++++ ..++.|.+++++|+-.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~G~aG~~~~ll~~~~~~~~~-----------~~~~~~~~~~~~l~~~ 134 (343)
T cd04434 66 LGDQELLKELLELLLLLVELILEDLKDLNYDLLSGLAGLLLALLLLYKTFGEE-----------IFLELIRKILDYLLEL 134 (343)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhcccCCCCcceeechHHHHHHHHHHHHhcCCc-----------CHHHHHHHHHHHHHHh
Confidence 355555556555554322211 1233344444444444455666666555 7888999999999876
Q ss_pred CCC-CCCCccceeeccCCCCCCCCCCccccccccchhhhhHHHHhhCCchHHHHHHHHHHHHHhccCCC-CCcceeeecC
Q 008122 184 FDT-PTGLPYAWINLKYGVMENETNETSTSGCGSLILEMGALSRLTGDPIYESAALRALRRLWSMRSSL-NLLGTTLDVT 261 (577)
Q Consensus 184 FdT-ptGiP~~~vNl~~g~~~~~~~~t~lAe~GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L~~~~~~~-gL~~~~id~~ 261 (577)
... ..+........ .+. .... -..+.....+-+..+.+.|.|+.+...++.+.+.+.+..... +..+... ..
T Consensus 135 ~~~~~~~~~~~~~~~-~~~-~~~g---~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 208 (343)
T cd04434 135 GKNGDGKIRWPMYFP-EGR-VNLG---LAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQDDSGGFWWPSR-SN 208 (343)
T ss_pred hhhccCCCceeeecc-CCc-cccc---hhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHccCCCCCCCCCCC-CC
Confidence 653 22222110000 000 0001 112333445667778888899999999888888765543322 2222100 00
Q ss_pred CCceecccccccCCCchhhhhHHHHHHhcCchHHHHHHHHHHHHHHH
Q 008122 262 TGEWIEYSSGIGAGVDSFYEYLFKAHILFGKEDFWRMFHSAYLAVQK 308 (577)
Q Consensus 262 tG~~~~~~~~~Ga~~DSyYEYLlK~~iL~g~~~~~~m~~~a~~~i~k 308 (577)
.+ .....+|--|.-..---|++.+-.++++++.+.-.+..+.+.+
T Consensus 209 ~~--~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (343)
T cd04434 209 GG--NRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWK 253 (343)
T ss_pred CC--ccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 00 0112233333333446677888888887766655554444333
No 27
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=85.62 E-value=1.1 Score=50.18 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=35.5
Q ss_pred hhHHHHhhCCchHHHHHHHHHHHHHhc-cCCCCCcc----eeeecCCCceecccc----cccCCCchhhhhHH
Q 008122 221 MGALSRLTGDPIYESAALRALRRLWSM-RSSLNLLG----TTLDVTTGEWIEYSS----GIGAGVDSFYEYLF 284 (577)
Q Consensus 221 F~~LS~lTGd~kY~~~a~ra~~~L~~~-~~~~gL~~----~~id~~tG~~~~~~~----~~Ga~~DSyYEYLl 284 (577)
+..||.+||||+|.+.|..+.+..... ....||+= .+||.+|.+-.+... .==-..=.|||-|.
T Consensus 78 L~~LS~lTgd~~Y~q~A~~~~~yfldh~~D~~GL~~WGGHrFi~L~tl~~eGP~~K~~VHELKhh~PyY~lm~ 150 (557)
T PF06917_consen 78 LVGLSNLTGDPKYQQRAQEIIRYFLDHFVDDSGLFYWGGHRFINLDTLQIEGPENKNMVHELKHHYPYYELMY 150 (557)
T ss_dssp HHHHHHHH--THHHHHHHHHHHHHHHHSB-TTS-BS-STT-EEETTT--EE-SSTT--SB--SS----HHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHhccCCCcceeecCceeEecccCCccCcchhhhHHHHhhcCcHHHHHH
Confidence 456999999999999999999988766 33457652 578888876544321 00112236888664
No 28
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=84.74 E-value=2 Score=46.43 Aligned_cols=130 Identities=16% Similarity=0.127 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhhhcc-CC-CCCCCCccceeeccCCCCCCCCCCccccccccchhhhhHHHHhhCCc-hHHHHHHHHHHHH
Q 008122 168 QLLTLAEDLGRRFLP-AF-DTPTGLPYAWINLKYGVMENETNETSTSGCGSLILEMGALSRLTGDP-IYESAALRALRRL 244 (577)
Q Consensus 168 ~LL~kA~dLadrLlp-AF-dTptGiP~~~vNl~~g~~~~~~~~t~lAe~GTl~LEF~~LS~lTGd~-kY~~~a~ra~~~L 244 (577)
.+|++|+.+-+.+.- -+ |+.+|+-+..++....=.. .....-+--.|+++-=...|.++|++. +|.+.|+++.+..
T Consensus 175 ~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~-~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~ 253 (370)
T PF03663_consen 175 TYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTN-INKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAA 253 (370)
T ss_dssp HHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B--TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCc-CCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 799999999998887 44 6778998888876551111 111122345688888888999999887 9999999999988
Q ss_pred Hhcc-CC-CCCccee-eec------CCCceecccccccCCCchhhhhHHHHHHhcCc--hHHHHHHHHHHHHHHH
Q 008122 245 WSMR-SS-LNLLGTT-LDV------TTGEWIEYSSGIGAGVDSFYEYLFKAHILFGK--EDFWRMFHSAYLAVQK 308 (577)
Q Consensus 245 ~~~~-~~-~gL~~~~-id~------~tG~~~~~~~~~Ga~~DSyYEYLlK~~iL~g~--~~~~~m~~~a~~~i~k 308 (577)
.+.- .. .|.+... .++ +.+.|.+ =|..||.+.+...+. +.|.+.....++++-+
T Consensus 254 ~~~~~~~~~gil~e~~ce~~~~~~~d~~~Fkg----------i~~r~L~~l~~~~~~~~~~~~~~l~~~a~~a~~ 318 (370)
T PF03663_consen 254 INHFFDNGDGILTEEACEPSGTCDGDQPLFKG----------IFARYLADLAQVAPDTADTYRDFLRKNADAAWR 318 (370)
T ss_dssp HHHHEETT--EE----------SSSGGGGHHH----------HHHHHHHHHHHHHT---HHHHHHHHHHHHHHH-
T ss_pred HHHhCCCCCeeeeccccccCcCcCCccHHHHH----------HHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHH
Confidence 6542 11 2333221 111 1111111 277888888888875 4677777777777764
No 29
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=83.76 E-value=4.1 Score=40.39 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=59.4
Q ss_pred CccccccccchhhhhHHHHhhCCchHHHHHHHHHHHHHhccCCCCCcceeeecCCCceecccc------cccCCCc---h
Q 008122 208 ETSTSGCGSLILEMGALSRLTGDPIYESAALRALRRLWSMRSSLNLLGTTLDVTTGEWIEYSS------GIGAGVD---S 278 (577)
Q Consensus 208 ~t~lAe~GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L~~~~~~~gL~~~~id~~tG~~~~~~~------~~Ga~~D---S 278 (577)
.++.|..-.+.+ |.|..++|||++|.++|+++++.+......-|.+-..-+ .+-|..... .+-+..= .
T Consensus 27 ~SamaQG~a~s~-l~RAy~~t~d~~Yl~aA~~al~~f~~~~~~GG~~~~~~~--~~~wyeEYp~~p~s~VLNGfiysL~G 103 (189)
T PF06662_consen 27 YSAMAQGQAISV-LARAYQLTGDEKYLDAAKKALNSFKVPVEEGGVLATFKN--KYPWYEEYPTTPPSYVLNGFIYSLIG 103 (189)
T ss_pred HhHHHHHHHHHH-HHHHHHhHCCHHHHHHHHHHHHHhcChHhhCCeeEEecC--CcEeEeecCCCCCCEEeehHHHHHHH
Confidence 344444333333 679999999999999999999987655444454332221 144443211 1111111 1
Q ss_pred hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Q 008122 279 FYEYLFKAHILFGKEDFWRMFHSAYLAVQKYF 310 (577)
Q Consensus 279 yYEYLlK~~iL~g~~~~~~m~~~a~~~i~k~l 310 (577)
-|+|- ..+++++..++|.+.+.++++.|
T Consensus 104 Lyd~~----~~~~~~~A~~lf~~Gl~sLk~~L 131 (189)
T PF06662_consen 104 LYDYY----RLTGDEEAKELFDKGLKSLKKML 131 (189)
T ss_pred HHHHH----HhcCCHHHHHHHHHHHHHHHHHH
Confidence 34444 55677889999999999999986
No 30
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=80.08 E-value=16 Score=42.74 Aligned_cols=157 Identities=18% Similarity=0.121 Sum_probs=97.2
Q ss_pred hhhhcccchhhhhccccchhhhccccchHHHHHHHHHHHhhhccCCCCCCCCccceeeccCCCCCCCCCCccccccccch
Q 008122 139 NIRVLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAFDTPTGLPYAWINLKYGVMENETNETSTSGCGSLI 218 (577)
Q Consensus 139 tIR~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpAFdTptGiP~~~vNl~~g~~~~~~~~t~lAe~GTl~ 218 (577)
|-=.+-+|..|+-+.+|+ ..|+.|+.+++.++..+... +++..+. .|... ....+..-.-++
T Consensus 413 Nglmi~aLa~a~~~~~d~-----------~~l~~A~~~~~fi~~~l~~~-rl~~~~~---~G~a~---~~g~leDYA~~i 474 (667)
T COG1331 413 NGLMIAALAEAGRVLGDP-----------EYLEAAERAADFILDNLYVD-RLLRRYR---GGEAA---VAGLLEDYAFLI 474 (667)
T ss_pred HHHHHHHHHHHHHHcCCh-----------HHHHHHHHHHHHHHHhhccc-chheeee---cCccc---ccccchhHHHHH
Confidence 455677899999999998 99999999999999887655 6654332 12221 122344455567
Q ss_pred hhhhHHHHhhCCchHHHHHHHHHHHHHhc-cCC-CCCcceeeecCCCceecccc----cccCCCchhhhhHHHHHHhcCc
Q 008122 219 LEMGALSRLTGDPIYESAALRALRRLWSM-RSS-LNLLGTTLDVTTGEWIEYSS----GIGAGVDSFYEYLFKAHILFGK 292 (577)
Q Consensus 219 LEF~~LS~lTGd~kY~~~a~ra~~~L~~~-~~~-~gL~~~~id~~tG~~~~~~~----~~Ga~~DSyYEYLlK~~iL~g~ 292 (577)
+=...|-+.|+|.+|.+.|.+..+.+... ... .|.+- ..+....-.+.... .+=++--..=.-|++..+++|+
T Consensus 475 ~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d~~gGf~~-t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~ 553 (667)
T COG1331 475 LGLLALYEATGDLAYLEKAIELADEAIADFWDDEGGFYD-TPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGD 553 (667)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcCCCCCccc-CCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCc
Confidence 77888999999999999998877765432 221 23221 11111111111110 0111122455789999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcCC
Q 008122 293 EDFWRMFHSAYLAVQKYFRHGP 314 (577)
Q Consensus 293 ~~~~~m~~~a~~~i~k~l~~~~ 314 (577)
.+|.+.=.+..+++...+.+.|
T Consensus 554 ~~y~e~A~~~L~a~~~~~~~~p 575 (667)
T COG1331 554 ARYLEAAEDILQAFAGLAERAP 575 (667)
T ss_pred hhHHHHHHHHHHHHHHHHHhCC
Confidence 8887766666666655554433
No 31
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=77.96 E-value=26 Score=35.90 Aligned_cols=113 Identities=19% Similarity=0.073 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCccceeeccCCCCCCCCCCccccccccchhhhhHHHHhhCCchHHHHHHHHHHHHHhc
Q 008122 168 QLLTLAEDLGRRFLPAFDTPTGLPYAWINLKYGVMENETNETSTSGCGSLILEMGALSRLTGDPIYESAALRALRRLWSM 247 (577)
Q Consensus 168 ~LL~kA~dLadrLlpAFdTptGiP~~~vNl~~g~~~~~~~~t~lAe~GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L~~~ 247 (577)
.+...++.+...+...++.+.+.+.+.... .............+++ .+=+..+++.|+|++|.+.++++.+.+++.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~wChG~~Gi---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (343)
T cd04434 179 SLEALIKALLKYERRLQDDSGGFWWPSRSN-GGNRFLVAWCHGAPGI---LLALLLAYKALGDDKYDEAAEKALELAWKR 254 (343)
T ss_pred hHHHHHHHHHHHHHHccCCCCCCCCCCCCC-CCccccceecCCChhH---HHHHHHHHHHcCcHHHHHHHHHHHHHHHHh
Confidence 444555555555555666666665541100 0001111112222333 344567888999999999999999998875
Q ss_pred cCCCCCcceeeecCCCceecccccccCCCchhhhhHHHHHHhcCchHHHHHH
Q 008122 248 RSSLNLLGTTLDVTTGEWIEYSSGIGAGVDSFYEYLFKAHILFGKEDFWRMF 299 (577)
Q Consensus 248 ~~~~gL~~~~id~~tG~~~~~~~~~Ga~~DSyYEYLlK~~iL~g~~~~~~m~ 299 (577)
.... .....|..+..| -.+.|+..+-.++++++.+.-
T Consensus 255 ~~~~--------~~~~~lChG~~G-------~~~~ll~l~~~~~~~~~~~~a 291 (343)
T cd04434 255 GLLE--------LKNPGLCHGIAG-------NLLILLLLYKLTGDLKFLARA 291 (343)
T ss_pred hhcc--------CCCCCcCcCccc-------hHHHHHHHHHHhCCHHHHHHH
Confidence 4311 122224433333 346777778888886655433
No 32
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=73.79 E-value=38 Score=40.35 Aligned_cols=149 Identities=17% Similarity=0.107 Sum_probs=76.7
Q ss_pred ccccchhhhhcccchhhhhccccchhhhccccchHHHHHHHHHHHhhhccCCC-CCCCCccceeeccCCCCCCCCCCccc
Q 008122 133 INLFECNIRVLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAFD-TPTGLPYAWINLKYGVMENETNETST 211 (577)
Q Consensus 133 VsvFETtIR~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpAFd-TptGiP~~~vNl~~g~~~~~~~~t~l 211 (577)
..++--..=++-.|+..|..++++ .+++.|++++++|+-.-. .+.+ ++ . ........-....
T Consensus 583 ~D~~~G~aGii~~Ll~l~~~~~~~-----------~~l~~a~~~~~~l~~~~~~~~~~-~~----~-~~~~~~~G~aHG~ 645 (825)
T cd04792 583 LDFISGAAGLILVLLSLYELFLSE-----------RFLDLALKCGDHLLENASNEDGG-IG----P-AEQPNLTGFAHGA 645 (825)
T ss_pred CCEeeecHHHHHHHHHHHhccCCh-----------HHHHHHHHHHHHHHHhhhhccCC-cc----c-ccccccccccccH
Confidence 344433333333466677777776 899999999999875322 1222 11 0 0000010111222
Q ss_pred cccccchhhhhHHHHhhCCchHHHHHHHHHHHHHhccCC-CCCcc-eeeecCCCceecccccccCCCchhhhhHHHHHHh
Q 008122 212 SGCGSLILEMGALSRLTGDPIYESAALRALRRLWSMRSS-LNLLG-TTLDVTTGEWIEYSSGIGAGVDSFYEYLFKAHIL 289 (577)
Q Consensus 212 Ae~GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L~~~~~~-~gL~~-~~id~~tG~~~~~~~~~Ga~~DSyYEYLlK~~iL 289 (577)
|+ ..+=+..|.+.|||++|.+.+.++++...+.... .+-+| ..-+.....|..+..|++ --+++.+-.
T Consensus 646 sG---i~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~~~~~~~~~~~WChG~~GI~-------lal~~~~~~ 715 (825)
T cd04792 646 SG---IAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWPRKDGNSFSAAWCHGAPGIL-------LARLELLKF 715 (825)
T ss_pred HH---HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCCCcCcCCCCCcccCCcHHHH-------HHHHHHHhc
Confidence 33 3455777888999999999999999866443221 11122 000111223554444433 344455544
Q ss_pred --cCchHHHHHHHHHHHHHHH
Q 008122 290 --FGKEDFWRMFHSAYLAVQK 308 (577)
Q Consensus 290 --~g~~~~~~m~~~a~~~i~k 308 (577)
.+++.+.+.-..+.+.+.+
T Consensus 716 ~~~~d~~~~~~i~~~~~~~~~ 736 (825)
T cd04792 716 NDLDDEELKEEIEIALKTTLK 736 (825)
T ss_pred CccchHHHHHHHHHHHHHHHH
Confidence 4555565555555544443
No 33
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.01 E-value=4.1 Score=38.09 Aligned_cols=63 Identities=19% Similarity=0.297 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccCCCcCCCCCCCcccccccccCCCCCCCCCceeeeeccchh-hhccCHHHHH--
Q 008122 39 HMKKKVHDMFYHAYENYLTHAFPHDELKPLSKSFTDSLSELGNLKLEHLPQHYNGSALTLIESMSSL-VIMGNNTEFE-- 115 (577)
Q Consensus 39 ~~r~~Vk~~f~hAw~~Y~~~Awg~DEL~P~S~~~~d~~~~~G~~~~~~~~~~~~G~glTLVDSLDTL-~IMGl~~EF~-- 115 (577)
.-+++|.+-+...-..|-+. ..|.+.|-+.- ++.+|+ |||||- .||++.|||.
T Consensus 49 l~k~~v~~RVl~VVk~~dki--~~~k~~~~s~f-------------------~~DLGl---DSLD~VEiVMAlEEEFgiE 104 (131)
T KOG1748|consen 49 LAKKEVVDRVLDVVKKFDKI--DPSKLTTDSDF-------------------FKDLGL---DSLDTVEIVMALEEEFGIE 104 (131)
T ss_pred hhHHHHHHHHHHHHHHhhcC--CccccchhhHH-------------------HHhcCC---cccccchhhhhhHHHhCCc
Confidence 45667777788887787653 34445553221 233353 899997 7899999996
Q ss_pred -------------HHHHHHHHhC
Q 008122 116 -------------RAVLWLSENL 125 (577)
Q Consensus 116 -------------~A~~~v~~~l 125 (577)
+|++||.++.
T Consensus 105 Ipd~dAdki~t~~da~~yI~~~~ 127 (131)
T KOG1748|consen 105 IPDEDADKIKTVRDAADYIADKP 127 (131)
T ss_pred cCcchhhhhCCHHHHHHHHHhcc
Confidence 7777877543
No 34
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=62.00 E-value=19 Score=38.06 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=35.9
Q ss_pred chhhhhHHHHh---hCCchHHHHHHHHHHHHHhccCCCCCcceeee
Q 008122 217 LILEMGALSRL---TGDPIYESAALRALRRLWSMRSSLNLLGTTLD 259 (577)
Q Consensus 217 l~LEF~~LS~l---TGd~kY~~~a~ra~~~L~~~~~~~gL~~~~id 259 (577)
-+-|...|+++ |+|++|.++++|+.+.|.+++.+.|-+|.+..
T Consensus 46 T~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p 91 (290)
T TIGR02474 46 TVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYP 91 (290)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccC
Confidence 35566666655 99999999999999999999988898888663
No 35
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=60.15 E-value=46 Score=35.71 Aligned_cols=80 Identities=9% Similarity=0.064 Sum_probs=52.1
Q ss_pred hhhhHHHHhhCCchHHHHHHHHHHHHHhccCCCCCcceeeecCCCceecccccccCCCchhhhhHHHHHHhcCchHHHHH
Q 008122 219 LEMGALSRLTGDPIYESAALRALRRLWSMRSSLNLLGTTLDVTTGEWIEYSSGIGAGVDSFYEYLFKAHILFGKEDFWRM 298 (577)
Q Consensus 219 LEF~~LS~lTGd~kY~~~a~ra~~~L~~~~~~~gL~~~~id~~tG~~~~~~~~~Ga~~DSyYEYLlK~~iL~g~~~~~~m 298 (577)
+-+..+++.++|+.|.+.+.++++.+++...... +..+..+.....| -.+.|++.+-.++++++.+.
T Consensus 251 ~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~lChG~~G-------~~~~l~~~~~~~~~~~~~~~ 317 (382)
T cd04793 251 RALQLAGKALDDQKLQEAAEKILKAALKDKKQLS------KLISPTLCHGLAG-------LLFIFYLLYKDTNTNEFKSA 317 (382)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhChhhhc------cCCCCCcCccHHH-------HHHHHHHHHHHhCCcHHHHH
Confidence 3344677889999999999999998875432111 1112223333333 34888899999999887776
Q ss_pred HHHHHHHHHHHhh
Q 008122 299 FHSAYLAVQKYFR 311 (577)
Q Consensus 299 ~~~a~~~i~k~l~ 311 (577)
.....+.+.+...
T Consensus 318 a~~~~~~~l~~~~ 330 (382)
T cd04793 318 LEYLLNQIISSYS 330 (382)
T ss_pred HHHHHHHHHHHhc
Confidence 6666666655543
No 36
>PF00299 Squash: Squash family serine protease inhibitor; InterPro: IPR000737 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The squash inhibitors form one of a number of serine proteinase inhibitor families. They belong to MEROPS inhibitor family I7, clan IE. They are generally annotated as either trypsin or elastase inhibitors (MEROPS peptidase family S1, IPR001254 from INTERPRO). The proteins, found exclusively in the seeds of the cucurbitaceae, e.g. Citrullus lanatus (watermelon), Cucumis sativus (cucumber), Momordica charantia (balsam pear), are approximately 30 residues in length and contain 6 Cys residues, which form 3 disulphide bonds []. The inhibitors function by being taken up by a serine protease (such as trypsin), which cleaves the peptide bond between Arg/Lys and Ile residues in the N-terminal portion of the protein [, ]. Structural studies have shown that the inhibitor has an ellipsoidal shape, and is largely composed of beta-turns []. The fold and Cys connectivity of the proteins resembles that of potato carboxypeptidase A inhibitor [].; GO: 0004867 serine-type endopeptidase inhibitor activity; PDB: 1MCT_I 2IT8_A 1HA9_A 1IB9_A 2C4B_B 2PO8_A 1F2S_I 1W7Z_H 2LET_A 2ETI_A ....
Probab=58.58 E-value=5.3 Score=27.74 Aligned_cols=22 Identities=36% Similarity=0.895 Sum_probs=15.3
Q ss_pred CcccCCCCccccccccccccccccceee
Q 008122 545 HRCFGDEECGVDATTCRRRTCSMAGYCG 572 (577)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (577)
-+|..|+|| .+.-.|-++||||
T Consensus 8 m~Ck~DsDC------l~~C~C~~~g~CG 29 (29)
T PF00299_consen 8 MECKRDSDC------LAGCICLENGYCG 29 (29)
T ss_dssp CB-SSGGGS------STTEEEETTSEEE
T ss_pred hhcccccCc------ccCCEEccCcccC
Confidence 356667776 4455799999998
No 37
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=57.10 E-value=72 Score=34.63 Aligned_cols=233 Identities=23% Similarity=0.294 Sum_probs=122.5
Q ss_pred cccchhhhhccccchhhhccccchHHHHHHHHHHHhhhccCCCCCCCCccceeeccCCCCCCCCCCccccccccchhhhh
Q 008122 143 LGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAFDTPTGLPYAWINLKYGVMENETNETSTSGCGSLILEMG 222 (577)
Q Consensus 143 LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpAFdTptGiP~~~vNl~~g~~~~~~~~t~lAe~GTl~LEF~ 222 (577)
|=|+.-+|+-|+|. .+|+..+...|-.+- ..|+|-..||-- +. | +=.-
T Consensus 42 lyGv~~~~eAT~d~-----------~yl~~l~~~~d~~i~----~~g~~~~~id~i-------------~~-g---~~L~ 89 (357)
T COG4225 42 LYGVARAYEATGDA-----------EYLDYLKTWFDEQID----EGGLPPRNIDHI-------------AA-G---LTLL 89 (357)
T ss_pred HHHHHHHHHHcCcH-----------HHHHHHHHHHHhhhc----cCCCCccchhhh-------------cc-C---ceee
Confidence 67899999999998 788888888776552 235554443321 11 1 1134
Q ss_pred HHHHhhCCchHHHHHHHHHHHHHhc-cCCCCCcceeeecCCCceecccccccCCCchhhhhHHHHHHhcCchHHHHHHHH
Q 008122 223 ALSRLTGDPIYESAALRALRRLWSM-RSSLNLLGTTLDVTTGEWIEYSSGIGAGVDSFYEYLFKAHILFGKEDFWRMFHS 301 (577)
Q Consensus 223 ~LS~lTGd~kY~~~a~ra~~~L~~~-~~~~gL~~~~id~~tG~~~~~~~~~Ga~~DSyYEYLlK~~iL~g~~~~~~m~~~ 301 (577)
.|.+-||||+|.++|.+.-+.+-.. |...|-+-....-.-.-|.+.-. +|+ -.++|.-.++|+++|.+-=..
T Consensus 90 ~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~~p~Q~W~DtL~-Ma~------~F~ak~g~~~~~~e~~d~~~~ 162 (357)
T COG4225 90 PLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKVKYPHQMWLDTLY-MAG------LFLAKYGQVTGRPEYFDEALY 162 (357)
T ss_pred ehhhhhCCHHHHHHHHHHHHHHhhCcccCCCccccccCchhHhhhcchh-hhh------HHHHHHHHHhCCHHHHHHHHH
Confidence 6899999999999999988877543 44445433222211122332211 010 357899999999876553333
Q ss_pred HHHHHHHHhhc---CCCccccccCCCcceeccccccccccc-cc--hh--hccccccchhhH---HHHHH----------
Q 008122 302 AYLAVQKYFRH---GPWYHEADMRNGKATYWQLTSLQAFWP-GL--QV--LVGDIAAANSSH---REFVH---------- 360 (577)
Q Consensus 302 a~~~i~k~l~~---~~~~~~~~~~~g~~~~~~~~hL~cF~p-G~--~~--L~g~~~~a~~~~---~~~~~---------- 360 (577)
......+||+. +-+|+.-+......-..+++-...||+ |+ .+ |.--++.-...| +.+..
T Consensus 163 QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~ 242 (357)
T COG4225 163 QFSLHEKYLRDPETGLYYHGWDEDGTMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALI 242 (357)
T ss_pred HHHHHHHHccCCCcCceEEeeccCCCCccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 33345566652 335553332111110001222234654 11 11 111111101111 11111
Q ss_pred -HHHHhCCCCcEEEccCccccCCCCcCCCChhhHHHHHHHHHhcC-------ChhHHHHHHHHHHHHHhhc
Q 008122 361 -VWKKFGVLPERYLLDHLMLHPTEKYYPLRPELAESTFYLYQATK-------DPWYLEVGESIVNSLNSYT 423 (577)
Q Consensus 361 -~~~~~Gl~PE~~~~~~~~~~~~~~~Y~LRPE~iES~fyLyR~Tg-------D~~Yre~gW~if~aiek~~ 423 (577)
+-+..|+==-+ ++++ ....| ||+-=|.-++|-+-+ +++|...+.+.+++|-.+-
T Consensus 243 r~Qde~GlW~ti--LDd~----~~~sy---~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~i 304 (357)
T COG4225 243 RYQDESGLWHTI--LDDG----RPGSY---LESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLGHI 304 (357)
T ss_pred Hhhccccchhhh--hccC----CCCCc---hhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhc
Confidence 11112211000 1111 11234 488889999998876 8999999999999997653
No 38
>cd00150 PlantTI Plant trypsin inhibitors such as squash trypsin inhibitor. Plant proteinase inhibitors play important roles in natural plant defense. Proteinase inhibitors from squash seeds form an uniform family of small proteins cross-linked with three disulfide bridges.
Probab=53.35 E-value=6.6 Score=26.89 Aligned_cols=22 Identities=36% Similarity=0.883 Sum_probs=16.2
Q ss_pred CcccCCCCccccccccccccccccceee
Q 008122 545 HRCFGDEECGVDATTCRRRTCSMAGYCG 572 (577)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (577)
-+|..|+||-- .-.|-.+||||
T Consensus 6 m~Ck~DsDCl~------~CiC~~~G~CG 27 (27)
T cd00150 6 MECKRDSDCLA------ECICLENGYCG 27 (27)
T ss_pred eeccccccccC------CCEEccccccC
Confidence 46777777743 34688999997
No 39
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=52.41 E-value=1.6e+02 Score=31.14 Aligned_cols=71 Identities=13% Similarity=0.044 Sum_probs=45.7
Q ss_pred hhhhhHHHHhhCCchHHHHHHHHHHHHHhccCCCCCcceeeecCCCceecccccccCCCchhhhhHHHHHHhcCchHHHH
Q 008122 218 ILEMGALSRLTGDPIYESAALRALRRLWSMRSSLNLLGTTLDVTTGEWIEYSSGIGAGVDSFYEYLFKAHILFGKEDFWR 297 (577)
Q Consensus 218 ~LEF~~LS~lTGd~kY~~~a~ra~~~L~~~~~~~gL~~~~id~~tG~~~~~~~~~Ga~~DSyYEYLlK~~iL~g~~~~~~ 297 (577)
.+-+..+++.++|++|.+.++++.+.+|+. |+.. ....+.....| --+-|++.|-.++++++.+
T Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~-----~~~~lCHG~~G-------~~~~lL~~~~~~~~~~~~~ 293 (343)
T cd04794 230 VYLLAKAYLVFKEEQYLEAAIKCGELIWKR----GLLK-----KGPGLCHGIAG-------NAYAFLLLYRLTGDLKYLY 293 (343)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh----CCcc-----CCCccccCccc-------hHHHHHHHHHHhCcHHHHH
Confidence 344567888999999999999999999864 2211 01112222222 2377889999999976555
Q ss_pred HHHHHHH
Q 008122 298 MFHSAYL 304 (577)
Q Consensus 298 m~~~a~~ 304 (577)
+=....+
T Consensus 294 ~a~~~~~ 300 (343)
T cd04794 294 RACKFAE 300 (343)
T ss_pred HHHHHHH
Confidence 4333333
No 40
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=51.19 E-value=1.4e+02 Score=32.43 Aligned_cols=190 Identities=18% Similarity=0.210 Sum_probs=107.0
Q ss_pred cCHHHHHHHHHHHHHhCCCcccccccccchhhhhccc-chhhhhccccchhhhccccchHHHHHHHHHHHhhhccCCCCC
Q 008122 109 GNNTEFERAVLWLSENLNFDVDARINLFECNIRVLGG-LVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAFDTP 187 (577)
Q Consensus 109 Gl~~EF~~A~~~v~~~l~F~~d~~VsvFETtIR~LGG-LLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpAFdTp 187 (577)
|..+-++...+|+-..+ +.+| ...-+.++=.-|= |+--|+-++|+ .+|+.|+++++.|+.-=-|.
T Consensus 53 ~d~~yl~~l~~~~d~~i--~~~g-~~~~~id~i~~g~~L~~L~e~T~~~-----------~Yl~~a~~~a~~l~~~~Rt~ 118 (357)
T COG4225 53 GDAEYLDYLKTWFDEQI--DEGG-LPPRNIDHIAAGLTLLPLYEQTGDP-----------RYLEAAIKLASWLVHEPRTK 118 (357)
T ss_pred CcHHHHHHHHHHHHhhh--ccCC-CCccchhhhccCceeeehhhhhCCH-----------HHHHHHHHHHHHHhhCcccC
Confidence 44444556666765433 2233 2222222111111 45556667777 99999999999998654555
Q ss_pred CCCccceeeccCCCCCCCCCCccccccccchhhhhHHHHhhCCchHHHHHHHHHHHHHhc-c-CCCCCcceeeecC-CCc
Q 008122 188 TGLPYAWINLKYGVMENETNETSTSGCGSLILEMGALSRLTGDPIYESAALRALRRLWSM-R-SSLNLLGTTLDVT-TGE 264 (577)
Q Consensus 188 tGiP~~~vNl~~g~~~~~~~~t~lAe~GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L~~~-~-~~~gL~~~~id~~-tG~ 264 (577)
.|.-...++ .+..-..-.|=-+|.+ +.++++.||+|.|.+-+.+.+....+. + ..+||+-.-.|.+ |+.
T Consensus 119 eG~f~H~~~-----~p~Q~W~DtL~Ma~~F---~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~~~~~ 190 (357)
T COG4225 119 EGGFQHKVK-----YPHQMWLDTLYMAGLF---LAKYGQVTGRPEYFDEALYQFSLHEKYLRDPETGLYYHGWDEDGTMP 190 (357)
T ss_pred CCccccccC-----chhHhhhcchhhhhHH---HHHHHHHhCCHHHHHHHHHHHHHHHHHccCCCcCceEEeeccCCCCc
Confidence 564332222 1111111223333433 456789999999999988766554432 2 3468876655543 345
Q ss_pred eeccccc---ccCCCchhhhhHHHH-HHhcCc-----hHHHHHHHHHHHHHHHHhhc-CCCccccc
Q 008122 265 WIEYSSG---IGAGVDSFYEYLFKA-HILFGK-----EDFWRMFHSAYLAVQKYFRH-GPWYHEAD 320 (577)
Q Consensus 265 ~~~~~~~---~Ga~~DSyYEYLlK~-~iL~g~-----~~~~~m~~~a~~~i~k~l~~-~~~~~~~~ 320 (577)
|-...++ +=|.+-+.|-+-|=- --+... .++.+...+-+++|.++-.. +-|+...|
T Consensus 191 w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qde~GlW~tiLD 256 (357)
T COG4225 191 WANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQDESGLWHTILD 256 (357)
T ss_pred cccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhccccchhhhhc
Confidence 5544444 335666777665433 233332 25778888999999998653 34554444
No 41
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=45.18 E-value=56 Score=34.65 Aligned_cols=45 Identities=22% Similarity=0.196 Sum_probs=30.8
Q ss_pred hhhhhHHH---HhhCCchHHHHHHHHHHHHHhccCCCCCcceeeecCC
Q 008122 218 ILEMGALS---RLTGDPIYESAALRALRRLWSMRSSLNLLGTTLDVTT 262 (577)
Q Consensus 218 ~LEF~~LS---~lTGd~kY~~~a~ra~~~L~~~~~~~gL~~~~id~~t 262 (577)
+.|...|+ +.|+|++|.+++.|+++.|.+.+-+.|-+|...-...
T Consensus 42 ~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~ 89 (289)
T PF09492_consen 42 TTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRG 89 (289)
T ss_dssp HHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--S
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCC
Confidence 44444444 5699999999999999999998888888888664433
No 42
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=41.45 E-value=28 Score=36.23 Aligned_cols=129 Identities=17% Similarity=0.127 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhhhccCCCCC--CCCccceeeccCCCCCCCCCCccccccccchhhhhHHH-HhhCCchHHHHHHHHHHHH
Q 008122 168 QLLTLAEDLGRRFLPAFDTP--TGLPYAWINLKYGVMENETNETSTSGCGSLILEMGALS-RLTGDPIYESAALRALRRL 244 (577)
Q Consensus 168 ~LL~kA~dLadrLlpAFdTp--tGiP~~~vNl~~g~~~~~~~~t~lAe~GTl~LEF~~LS-~lTGd~kY~~~a~ra~~~L 244 (577)
.+++.+.+++++|+.....- ...|...-.. .+.. +..-....|+ ..+=+.++. +.|++++|.+.++++.+.+
T Consensus 126 ~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~-~~G~aHG~~G---i~~~L~~~~~~~~~~~~~~~~i~~~~~~~ 200 (355)
T PF05147_consen 126 KYLDIIEKILEKLLESIINDDPSENQIGSEWK-EGFI-NLGFAHGIAG---ILYALLRLYKKGTKDPEYLKLIEQILNFL 200 (355)
T ss_dssp HS-HHHHHHHHHCCCHHCCCHTCCGSSSHHCH-TTBE-E-STTTSHHH---HHHHHCHCCHHT--HHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCccccC-CCCc-cCCccccHHH---HHHHHHHhhhcccCchhHHHHHHHHHHHH
Confidence 67789999999998877531 0111100000 0100 0000111222 233345677 6999999999999999999
Q ss_pred HhccCC-CCCcceeeecC----CCceecccccccCCCchhhhhHHHHHHhcCchHHHHHHHHHHHHHHH
Q 008122 245 WSMRSS-LNLLGTTLDVT----TGEWIEYSSGIGAGVDSFYEYLFKAHILFGKEDFWRMFHSAYLAVQK 308 (577)
Q Consensus 245 ~~~~~~-~gL~~~~id~~----tG~~~~~~~~~Ga~~DSyYEYLlK~~iL~g~~~~~~m~~~a~~~i~k 308 (577)
.+.... .+-+|...+.. ...|..+..|++ =-+++.+-.++++.+.+...++...+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~WC~G~~Gi~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (355)
T PF05147_consen 201 LKHFNTDDGGWPDNRNNSNYKSRPSWCYGSPGIL-------LALLKAYKILDDEEYDEEAEQALESILQ 262 (355)
T ss_dssp HHC--TGCCT--SECTHHHHHC--SSSSSHHHHH-------HHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHhcCcccCCCCCCCCccccccccccccCcHHHH-------HHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 877632 33366655544 456766655543 3346666667777776666666555544
No 43
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=40.17 E-value=1.6e+02 Score=35.86 Aligned_cols=115 Identities=18% Similarity=0.300 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHhhhccC-------CCC-CCCCccceeeccCCCCC--CCCCCccccccccchhhhhHHHHhhCCchHHH
Q 008122 166 KNQLLTLAEDLGRRFLPA-------FDT-PTGLPYAWINLKYGVME--NETNETSTSGCGSLILEMGALSRLTGDPIYES 235 (577)
Q Consensus 166 ~~~LL~kA~dLadrLlpA-------FdT-ptGiP~~~vNl~~g~~~--~~~~~t~lAe~GTl~LEF~~LS~lTGd~kY~~ 235 (577)
++.+++.|.++||-|+.- |.+ -.|||+. + .|..- .+.+...--+..-..|=|.+|..+||...|.+
T Consensus 595 ~e~~v~~a~~ige~i~~~~I~g~~~~~~~~~~is~~---~-~g~~~~lsp~g~dlydG~~GI~LF~ayL~~vtgk~~Y~~ 670 (963)
T COG4403 595 NEYFVSIANDIGEHIIKQLIIGVDDFETSLIWISTT---F-EGQGWSLSPLGNDLYDGSAGIALFFAYLALVTGKDYYKE 670 (963)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCcceEEEEEee---e-ccceEEeecCCchhhcCcchHHHHHHHHHHhcChHHHHH
Confidence 458899999999988752 111 1123221 1 12110 00000000111224677999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCcceeeecCCCceecccccccCCCchhhhhHHHHHHhcCchHHHH
Q 008122 236 AALRALRRLWSMRSSLNLLGTTLDVTTGEWIEYSSGIGAGVDSFYEYLFKAHILFGKEDFWR 297 (577)
Q Consensus 236 ~a~ra~~~L~~~~~~~gL~~~~id~~tG~~~~~~~~~Ga~~DSyYEYLlK~~iL~g~~~~~~ 297 (577)
.|.++...+.+.-.. .+.|. ..|-++ |.-||+--|.|.+.++++.....
T Consensus 671 ia~~~L~~~~~sv~~-~~~~~----~iga~~--------G~~g~~yal~~I~~~~~~~~l~~ 719 (963)
T COG4403 671 IAIKALQDSRKSVNN-NLNPI----NIGAFT--------GLSGYFYALWKIYSVTRDNYLIQ 719 (963)
T ss_pred HHHHHHHHHHHhhhh-ccCCc----cccccc--------ccchhhhhhHHHHHhcccHHHHH
Confidence 999988887765332 44441 122222 23367777889999999875443
No 44
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=38.66 E-value=45 Score=36.80 Aligned_cols=97 Identities=19% Similarity=0.250 Sum_probs=57.9
Q ss_pred cchhhhhccccchhhhccccchHHHHHHHHHHHhhhccCCCCCCCCccceeeccCCCCCCCCCCccccc---cccchhhh
Q 008122 145 GLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRRFLPAFDTPTGLPYAWINLKYGVMENETNETSTSG---CGSLILEM 221 (577)
Q Consensus 145 GLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadrLlpAFdTptGiP~~~vNl~~g~~~~~~~~t~lAe---~GTl~LEF 221 (577)
.||+-|+|-.- .+.......+.|-..-.+--..+||-|||.+|-.|.-=.+.-|+.++ +|. -.|-+=-.
T Consensus 492 SLiGLYDL~eT--a~~Kia~EA~~Ly~~Gm~SLK~mLpLyDTGSGTiYDLRH~~LG~APN------LARWDYHatHvnqL 563 (594)
T KOG3760|consen 492 SLIGLYDLDET--ARAKIAQEAQELYSAGMRSLKQMLPLYDTGSGTIYDLRHVALGTAPN------LARWDYHATHVNQL 563 (594)
T ss_pred Hhhhhhccchh--hhHHHHHHHHHHHHHHHHHHHhhheeeecCCCceeehhhhhhccCcc------cccchhhhHHHHHH
Confidence 47788888321 11111111223444444444569999999999877544444465554 332 12333345
Q ss_pred hHHHHhhCCchHHHHHHHHHHHHHhccC
Q 008122 222 GALSRLTGDPIYESAALRALRRLWSMRS 249 (577)
Q Consensus 222 ~~LS~lTGd~kY~~~a~ra~~~L~~~~~ 249 (577)
.-|+-+-.||.+.+.|+|=.-.+...|.
T Consensus 564 ~llatId~dpv~~~ta~RWkgY~~G~RA 591 (594)
T KOG3760|consen 564 KLLATIDKDPVLSKTADRWKGYAYGKRA 591 (594)
T ss_pred HHHhhccccHHHHHHHHHHHhhhhcccc
Confidence 5688999999999999986655555544
No 45
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=38.09 E-value=1.4e+02 Score=32.83 Aligned_cols=148 Identities=15% Similarity=0.125 Sum_probs=81.3
Q ss_pred hhccCHHHHHHHHHHHHHhCCCccc--------------ccccccchhhhhcccchhhhhccccchhhhccccchHHHHH
Q 008122 106 VIMGNNTEFERAVLWLSENLNFDVD--------------ARINLFECNIRVLGGLVSAHILATDSANRLVQGSYKNQLLT 171 (577)
Q Consensus 106 ~IMGl~~EF~~A~~~v~~~l~F~~d--------------~~VsvFETtIR~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~ 171 (577)
.+++.+++|++-.+|..+|+.-..+ +...|-+.|-=-=|=|.=||.|.--. ..+-+..+++
T Consensus 65 v~a~Dr~~Fd~Lw~Wt~~~L~~~d~~~~L~aW~w~~~~~g~~~v~D~NsASDGDl~IA~ALl~A~-----~~W~~~~Y~~ 139 (376)
T PRK11097 65 LVANDRAAFDKLLNWTENNLAQGDLTARLPAWLWGKKADGTWGVLDANSASDADLWIAYSLLEAG-----RLWKEPRYTA 139 (376)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCCCcccCceeEeccCCCCCcCCCCCCCCChHHHHHHHHHHHHH-----HhhCcHHHHH
Confidence 4589999999999999988742211 12223232222222344444443110 1122336788
Q ss_pred HHHHHHhhhccCC-CCCCCCccceeecc-CCCCCCCCCCccccccccchhh-hhHHHHhhCCchHHHHHHHHHHHHHhcc
Q 008122 172 LAEDLGRRFLPAF-DTPTGLPYAWINLK-YGVMENETNETSTSGCGSLILE-MGALSRLTGDPIYESAALRALRRLWSMR 248 (577)
Q Consensus 172 kA~dLadrLlpAF-dTptGiP~~~vNl~-~g~~~~~~~~t~lAe~GTl~LE-F~~LS~lTGd~kY~~~a~ra~~~L~~~~ 248 (577)
.|+.|..+|+.-= .+-+|+ ...+.+. .|..+......+.+ =+.+. |..+++.++|+.+.++++..++.|.+..
T Consensus 140 ~A~~ll~~I~~~ev~~~~g~-g~~LlPG~~gF~~~~~~~~NPS---Y~~p~~~~~fa~~~~~~~W~~l~~~~~~lL~~~a 215 (376)
T PRK11097 140 LGTALLKRIAREEVVTVPGL-GSMLLPGPVGFADDGSWRLNPS---YLPPQLLRRFARFLPGGPWAALAATNARLLLETA 215 (376)
T ss_pred HHHHHHHHHHHhcccccCCC-ceeeccccccccCCCCCeECcc---cccHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 8888888877631 111222 0000000 01001000011111 12233 6778999999999999999888887766
Q ss_pred CCCCCcceeeecCCC
Q 008122 249 SSLNLLGTTLDVTTG 263 (577)
Q Consensus 249 ~~~gL~~~~id~~tG 263 (577)
+.||+|..+..+.+
T Consensus 216 -~tGL~PDWv~~~~~ 229 (376)
T PRK11097 216 -PKGFSPDWVRYQKG 229 (376)
T ss_pred -ccCCCCcceeEcCC
Confidence 78999998877543
No 46
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=36.21 E-value=2.6e+02 Score=30.02 Aligned_cols=141 Identities=19% Similarity=0.166 Sum_probs=77.9
Q ss_pred hhhccCHHHHHHHHHHHHHhCCCcc----------ccc--c----cccchhhhhcccchhhhhccccchhhhccccchHH
Q 008122 105 LVIMGNNTEFERAVLWLSENLNFDV----------DAR--I----NLFECNIRVLGGLVSAHILATDSANRLVQGSYKNQ 168 (577)
Q Consensus 105 L~IMGl~~EF~~A~~~v~~~l~F~~----------d~~--V----svFETtIR~LGGLLSAY~Ls~d~~~~~~~~~y~~~ 168 (577)
..+|+-+++|++-.+|..+++.-.. ++. + |.-+-=+.+-=+||=|...=++. .| .
T Consensus 65 av~~~d~~~Fd~l~~wt~~~l~~~~~~L~aW~~~~~~~~~~~~~nsAtDgDl~iA~ALl~A~~~Wg~~-------~~--~ 135 (342)
T PF01270_consen 65 AVLMDDRATFDRLWNWTKANLSRRNDGLMAWRWGPDGNSQVGDPNSATDGDLDIAYALLLAARRWGDG-------AY--N 135 (342)
T ss_dssp HHHTTHHHHHHHHHHHHHHHCBTTTTSSBESEEETTSTSSCEECSEBHHHHHHHHHHHHHHHHHHTSS-------SS--H
T ss_pred HHHhCCHHHHHHHHHHHHHHhccCCCCCeeEEECCCCCCCCCCCCCCChHHHHHHHHHHHHHhhcCCc-------ch--h
Confidence 4678999999999999999887211 111 1 22333355555666665554432 22 3
Q ss_pred HHHHHHHHHhhhccCCCCCCCCccceeeccCCCC---CCCCCCccccccccchhhhhHHHHhhCCchHHHHHHHHHHHHH
Q 008122 169 LLTLAEDLGRRFLPAFDTPTGLPYAWINLKYGVM---ENETNETSTSGCGSLILEMGALSRLTGDPIYESAALRALRRLW 245 (577)
Q Consensus 169 LL~kA~dLadrLlpAFdTptGiP~~~vNl~~g~~---~~~~~~t~lAe~GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L~ 245 (577)
++..|+.+...++..-.. .| .--+..|.. ......++++-. +.-=|..+.+.|+|+.+.+++++..+.|.
T Consensus 136 y~~~A~~~~~~i~~~~v~-~g----~~~llpG~~~f~~~~~~~~npSY~--~~pa~~~f~~~~~~~~W~~v~~~~~~ll~ 208 (342)
T PF01270_consen 136 YLAEALAIINAIKTHEVN-PG----RYVLLPGDWGFNSDDYWTTNPSYF--MPPAFRAFAAATGDPRWNEVADSSYALLQ 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHEE-TT----EEEECSSSSSCBTTSEEEEEGGGS---HHHHHHHHHHHCCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhheeC-CC----ceEEeccccccCCCCceEeChhhc--cHHHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 455555555443322111 23 011111111 110111122211 11236688899999999999999998887
Q ss_pred hcc-CCCCCcceeeecC
Q 008122 246 SMR-SSLNLLGTTLDVT 261 (577)
Q Consensus 246 ~~~-~~~gL~~~~id~~ 261 (577)
+.. +..||+|..+..+
T Consensus 209 ~~~~~~tGL~PDw~~~~ 225 (342)
T PF01270_consen 209 KASFPKTGLPPDWVVYD 225 (342)
T ss_dssp HHHTTTTTB--SSEETT
T ss_pred HhcccCCCCCchheeec
Confidence 765 3589999988776
No 47
>PF12060 DUF3541: Domain of unknown function (DUF3541); InterPro: IPR021928 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 230 amino acids in length.
Probab=34.23 E-value=34 Score=34.64 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=22.5
Q ss_pred CCcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008122 383 EKYYPLRPELAESTFYLYQATKDPWYLEVGESIVNSL 419 (577)
Q Consensus 383 ~~~Y~LRPE~iES~fyLyR~TgD~~Yre~gW~if~ai 419 (577)
..||-|| |||.||||||....|.=.-.+
T Consensus 29 ~GHyglR---------mYRqT~d~kYaaa~~~D~~rV 56 (227)
T PF12060_consen 29 QGHYGLR---------MYRQTGDPKYAAAVWSDMARV 56 (227)
T ss_pred cchHHHH---------HHHHhccHHHHHHHHHHHHHH
Confidence 4578777 899999999999999655443
No 48
>smart00286 PTI Plant trypsin inhibitors.
Probab=33.46 E-value=22 Score=24.83 Aligned_cols=22 Identities=36% Similarity=0.951 Sum_probs=16.4
Q ss_pred CcccCCCCccccccccccccccccceee
Q 008122 545 HRCFGDEECGVDATTCRRRTCSMAGYCG 572 (577)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (577)
-+|..|+||=-+ -.|-++||||
T Consensus 8 m~Ck~DsDCl~~------CiC~~~G~CG 29 (29)
T smart00286 8 MECKRDSDCMAE------CICLANGYCG 29 (29)
T ss_pred hccccccCcccC------CEEccccccC
Confidence 468888888643 2588899997
No 49
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=29.24 E-value=81 Score=33.83 Aligned_cols=67 Identities=19% Similarity=0.093 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCccceeeccCCCCCCCCCCccccccccchhhhhHHHHhhCCchHHHHHHHHHHHHHhc
Q 008122 168 QLLTLAEDLGRRFLPAFDTPTGLPYAWINLKYGVMENETNETSTSGCGSLILEMGALSRLTGDPIYESAALRALRRLWSM 247 (577)
Q Consensus 168 ~LL~kA~dLadrLlpAFdTptGiP~~~vNl~~g~~~~~~~~t~lAe~GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L~~~ 247 (577)
.+++.|.++.+.++....... + ..+.+-....|+. ..-|.++++.|||+.|.+.|++..+.+.+.
T Consensus 264 ~~~~~a~~~~~~~~~~~~~~~-----------~-~~~~~lChG~~G~---~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~ 328 (382)
T cd04793 264 KLQEAAEKILKAALKDKKQLS-----------K-LISPTLCHGLAGL---LFIFYLLYKDTNTNEFKSALEYLLNQIISS 328 (382)
T ss_pred HHHHHHHHHHHHHHhChhhhc-----------c-CCCCCcCccHHHH---HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 778888888777665432110 0 0011111112222 345678999999999999999999988765
Q ss_pred cC
Q 008122 248 RS 249 (577)
Q Consensus 248 ~~ 249 (577)
..
T Consensus 329 ~~ 330 (382)
T cd04793 329 YS 330 (382)
T ss_pred hc
Confidence 43
No 50
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=28.36 E-value=66 Score=32.02 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHHHhhcccCCCccc
Q 008122 391 ELAESTFYLYQATKDPWYLEVGESIVNSLNSYTKVDGGFAS 431 (577)
Q Consensus 391 E~iES~fyLyR~TgD~~Yre~gW~if~aiek~~r~~~Gya~ 431 (577)
+.|..+-=+|.+|||++|++.|-+.++++..- ..++|...
T Consensus 34 ~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~-~~~GG~~~ 73 (189)
T PF06662_consen 34 QAISVLARAYQLTGDEKYLDAAKKALNSFKVP-VEEGGVLA 73 (189)
T ss_pred HHHHHHHHHHHhHCCHHHHHHHHHHHHHhcCh-HhhCCeeE
Confidence 56777778899999999999999999988742 23456433
No 51
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=28.08 E-value=54 Score=33.25 Aligned_cols=30 Identities=23% Similarity=0.202 Sum_probs=22.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHhhccc
Q 008122 396 TFYLYQATKDPWYLEVGESIVNSLNSYTKV 425 (577)
Q Consensus 396 ~fyLyR~TgD~~Yre~gW~if~aiek~~r~ 425 (577)
+-.+|++|||++|.+.+-+|+.++-..+++
T Consensus 65 lAlay~~Tgd~~YA~~a~~iL~~W~~~~~~ 94 (272)
T PF05426_consen 65 LALAYYLTGDEKYADKAAEILNAWALNYKT 94 (272)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHccCcc
Confidence 446799999999999999999998444443
No 52
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.53 E-value=60 Score=36.95 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=28.9
Q ss_pred cCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 008122 385 YYPLRPELAESTFYLYQATKDPWYLEVGESIV 416 (577)
Q Consensus 385 ~Y~LRPE~iES~fyLyR~TgD~~Yre~gW~if 416 (577)
.|.--||+=|.+-=|||+||||+|.+.|....
T Consensus 176 g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi 207 (589)
T COG3533 176 GYCGHPEIELALAELYRLTGDQRYLDLARRFI 207 (589)
T ss_pred cccCCCchhHHHHHHHHHhcChHHHHHHHHHH
Confidence 58888999999999999999999999997654
No 53
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=25.49 E-value=95 Score=27.66 Aligned_cols=30 Identities=20% Similarity=0.373 Sum_probs=23.0
Q ss_pred hhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Q 008122 281 EYLFKAHILFGKEDFWRMFHSAYLAVQKYF 310 (577)
Q Consensus 281 EYLlK~~iL~g~~~~~~m~~~a~~~i~k~l 310 (577)
|--+..|+|+|++.|.+-|..+...+.+.+
T Consensus 26 e~~~RgYlltgd~~~l~~y~~~~~~~~~~l 55 (138)
T PF05227_consen 26 ESALRGYLLTGDPEFLEPYQEARARLEKAL 55 (138)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHcCCHhhhchHHHHHHHHHHHH
Confidence 345778999999999999999888877765
No 54
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=24.38 E-value=1.2e+02 Score=32.78 Aligned_cols=106 Identities=24% Similarity=0.206 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhCCCcccccccccchhhhhc------cc------chhhhhccccchhhhccccchHHHHHHHHHHHh
Q 008122 111 NTEFERAVLWLSENLNFDVDARINLFECNIRVL------GG------LVSAHILATDSANRLVQGSYKNQLLTLAEDLGR 178 (577)
Q Consensus 111 ~~EF~~A~~~v~~~l~F~~d~~VsvFETtIR~L------GG------LLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLad 178 (577)
.+..+..++|+.+ ..|. +++..+-|.+-|=. |. |.=||..=++ ..+|+-|.+.||
T Consensus 244 ~~dVK~sldym~~-~rfp-sGNyP~s~~~~~drLVhWcHGApGv~~~L~kAy~VF~E-----------ekyl~aa~ecad 310 (403)
T KOG2787|consen 244 LKDVKGSLDYMIQ-NRFP-SGNYPSSEGNKRDRLVHWCHGAPGVAYTLAKAYQVFKE-----------EKYLEAAMECAD 310 (403)
T ss_pred HHhhhhHHHHHHH-ccCC-CCCCCcccCCCcceeeeeccCCchHHHHHHHHHHHhhH-----------HHHHHHHHHHHH
Confidence 4566778888875 4554 66666665443311 11 2233333332 489999999999
Q ss_pred hhccCCCCCCCCccceeeccCCCCCCCCCCccccccccchhhhhHHHHhhCCchHHHHHHHHHHHHHhc
Q 008122 179 RFLPAFDTPTGLPYAWINLKYGVMENETNETSTSGCGSLILEMGALSRLTGDPIYESAALRALRRLWSM 247 (577)
Q Consensus 179 rLlpAFdTptGiP~~~vNl~~g~~~~~~~~t~lAe~GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L~~~ 247 (577)
.+-. .|+ +|+|+. -...+|+- ---|..|-|||||++|...|.+-..-+...
T Consensus 311 vVW~-----rGl------Lkkg~G----ichGvaGN---aYvFLsLyRLT~d~kYlyRA~kFae~lld~ 361 (403)
T KOG2787|consen 311 VVWK-----RGL------LKKGVG----ICHGVAGN---AYVFLSLYRLTGDMKYLYRAKKFAEWLLDY 361 (403)
T ss_pred HHHH-----hhh------hhcCCc----ccccccCc---hhhhHhHHHHcCcHHHHHHHHHHHHHHHhh
Confidence 7642 233 222211 01111221 234889999999999999999877776543
No 55
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=24.07 E-value=1.2e+02 Score=35.30 Aligned_cols=81 Identities=14% Similarity=0.172 Sum_probs=54.4
Q ss_pred cccchhhccccccchhhHHHHHHHHHHhCCCCcEEEccCccccCCCCcCCC---ChhhHHHHHHHHHhcCChhHHHHHHH
Q 008122 338 WPGLQVLVGDIAAANSSHREFVHVWKKFGVLPERYLLDHLMLHPTEKYYPL---RPELAESTFYLYQATKDPWYLEVGES 414 (577)
Q Consensus 338 ~pG~~~L~g~~~~a~~~~~~~~~~~~~~Gl~PE~~~~~~~~~~~~~~~Y~L---RPE~iES~fyLyR~TgD~~Yre~gW~ 414 (577)
+||+....|..+.|+...+.|.+. .+.|+.|..|.-... .+.|.= -|=.|.++.-.|+.|||....+.-|.
T Consensus 302 l~Gl~l~tgr~~~A~~iL~~fa~~-~~~GliPN~~~~~g~-----~p~YntvDAtLWfi~al~~Y~~~tgD~~~l~~l~p 375 (575)
T TIGR01561 302 LEGLLLIDKQFDEAKEAILKFANL-CKRGLIPNNFIAFGG-----DPIYNGVDASLWAIHAIDKTFAYSQDFLFIRDVVD 375 (575)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHH-hHCCCCCCccCCCCC-----CccCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 677776678888888877777664 479999998743211 122321 12366777778999999988877777
Q ss_pred HHHHH-Hhhcc
Q 008122 415 IVNSL-NSYTK 424 (577)
Q Consensus 415 if~ai-ek~~r 424 (577)
..+.| +.+.+
T Consensus 376 ~l~~ii~~y~~ 386 (575)
T TIGR01561 376 KVLDIIDNYCA 386 (575)
T ss_pred HHHHHHHHHhc
Confidence 66665 44544
No 56
>PF11329 DUF3131: Protein of unknown function (DUF3131); InterPro: IPR021478 This bacterial family of proteins has no known function.
Probab=22.27 E-value=6.2e+02 Score=27.89 Aligned_cols=132 Identities=23% Similarity=0.292 Sum_probs=72.8
Q ss_pred hhcccchhhhhccccchhhhccccchHHHHHHHHHHHhh--hccCCCCCCCCccceeeccCCCCCCCC---CC---cccc
Q 008122 141 RVLGGLVSAHILATDSANRLVQGSYKNQLLTLAEDLGRR--FLPAFDTPTGLPYAWINLKYGVMENET---NE---TSTS 212 (577)
Q Consensus 141 R~LGGLLSAY~Ls~d~~~~~~~~~y~~~LL~kA~dLadr--LlpAFdTptGiP~~~vNl~~g~~~~~~---~~---t~lA 212 (577)
=+|-+|+||.+|-==. .+.+.++...+-.- =||-| +.++|..+.|-+++.+-+.. .. -+.-
T Consensus 38 ~yL~al~AA~~lglIs---------~~e~~~Rl~~~L~tL~~lpl~--~g~lPn~~Y~t~T~~~~~~~~~p~~~~gwSav 106 (367)
T PF11329_consen 38 SYLMALVAARELGLIS---------REEFDQRLEKTLATLEKLPLF--RGHLPNKWYNTQTGQPVDYGNQPGERIGWSAV 106 (367)
T ss_pred HHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHHHHhCccc--CCcCccceeecCcCcccccCCCCCccCCccHh
Confidence 5788899999984211 01222222221111 14555 46899999999888764311 11 1233
Q ss_pred ccccchhhhhHHHHhhCCchHHHHHHHHHHHH--HhccCCCC-CcceeeecCCCceecccccccCCCchhhhhHHHHHHh
Q 008122 213 GCGSLILEMGALSRLTGDPIYESAALRALRRL--WSMRSSLN-LLGTTLDVTTGEWIEYSSGIGAGVDSFYEYLFKAHIL 289 (577)
Q Consensus 213 e~GTl~LEF~~LS~lTGd~kY~~~a~ra~~~L--~~~~~~~g-L~~~~id~~tG~~~~~~~~~Ga~~DSyYEYLlK~~iL 289 (577)
++|-|..=+..|.+ .-|.|.+.++++.... -..-. .| |++..++..... ......+| |=||.-+.+.|
T Consensus 107 D~GrLl~~L~il~~--~~P~~a~~v~~l~~~W~~~~~i~-~G~l~ga~~~~~~~~-~~qegRlG-----ye~YAA~~~~l 177 (367)
T PF11329_consen 107 DIGRLLIALRILKQ--RYPEYAEQVDALVLRWNFCRLID-DGELYGATVNKGQEQ-YRQEGRLG-----YEEYAARGFQL 177 (367)
T ss_pred hHHHHHHHHHHHHH--HCchHHHHHHHHHHhCCHHHHhc-CCeeeeeEecCCceE-Eeeccccc-----HHHHHHHHHHH
Confidence 45555554444443 4788888888776642 11111 33 666666554211 11222333 78999999999
Q ss_pred cCc
Q 008122 290 FGK 292 (577)
Q Consensus 290 ~g~ 292 (577)
.|-
T Consensus 178 wG~ 180 (367)
T PF11329_consen 178 WGF 180 (367)
T ss_pred cCC
Confidence 884
Done!