Query 008123
Match_columns 577
No_of_seqs 271 out of 553
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 18:40:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ke4_A CDC42-interacting prote 92.1 0.33 1.1E-05 41.9 6.9 75 17-92 12-88 (98)
2 3o0z_A RHO-associated protein 82.9 8.9 0.0003 36.1 10.6 84 17-100 59-156 (168)
3 3ra3_B P2F; coiled coil domain 70.0 3.6 0.00012 26.8 2.7 20 68-87 9-28 (28)
4 1kd8_A GABH AIV, GCN4 acid bas 67.9 8 0.00027 27.3 4.4 27 65-91 7-33 (36)
5 1fxk_A Prefoldin; archaeal pro 65.1 14 0.00049 31.1 6.6 79 19-97 14-103 (107)
6 2w6b_A RHO guanine nucleotide 64.4 10 0.00035 29.2 4.8 33 18-50 15-47 (56)
7 3mq9_A Bone marrow stromal ant 64.3 8.8 0.0003 40.6 6.3 74 19-99 396-469 (471)
8 3ol1_A Vimentin; structural ge 62.0 15 0.00052 32.3 6.4 56 25-95 46-105 (119)
9 2zqm_A Prefoldin beta subunit 60.3 17 0.00057 31.1 6.2 80 20-99 20-110 (117)
10 4dzn_A Coiled-coil peptide CC- 59.6 19 0.00066 24.2 4.8 26 70-95 6-31 (33)
11 3m48_A General control protein 58.4 9.6 0.00033 26.4 3.3 23 65-87 6-28 (33)
12 4dzn_A Coiled-coil peptide CC- 57.8 14 0.00047 24.9 3.9 24 74-97 3-26 (33)
13 2lw1_A ABC transporter ATP-bin 57.2 40 0.0014 27.9 7.8 56 25-92 27-82 (89)
14 2wq1_A General control protein 57.2 14 0.00049 25.5 4.0 23 66-88 7-29 (33)
15 1kd8_B GABH BLL, GCN4 acid bas 52.9 21 0.00073 25.2 4.4 26 66-91 8-33 (36)
16 1g6u_A Domain swapped dimer; d 52.5 18 0.00061 26.2 4.1 24 73-96 20-43 (48)
17 1uo4_A General control protein 51.4 17 0.00059 25.3 3.7 23 65-87 7-29 (34)
18 1x79_B RAB GTPase binding effe 51.0 73 0.0025 28.0 8.7 63 23-99 9-71 (112)
19 1fmh_A General control protein 50.9 29 0.00098 23.4 4.6 24 68-91 3-26 (33)
20 2eqb_B RAB guanine nucleotide 49.6 30 0.001 29.8 5.8 48 22-101 21-68 (97)
21 3swk_A Vimentin; cytoskeleton, 47.3 94 0.0032 25.7 8.5 27 24-50 25-51 (86)
22 3c3f_A Alpha/beta peptide with 45.8 28 0.00096 24.2 4.0 24 65-88 7-30 (34)
23 2dfs_A Myosin-5A; myosin-V, in 45.4 39 0.0013 40.3 8.0 23 71-93 1021-1043(1080)
24 2l5g_B Putative uncharacterize 44.4 39 0.0013 24.7 4.8 29 69-97 5-33 (42)
25 1ses_A Seryl-tRNA synthetase; 44.3 88 0.003 33.1 9.9 72 19-100 27-98 (421)
26 4dac_A Computationally designe 42.9 5.2 0.00018 26.0 0.0 16 73-88 8-23 (28)
27 3um3_B Charged multivesicular 42.8 75 0.0026 27.5 7.4 55 28-90 7-61 (104)
28 3he5_A Synzip1; heterodimeric 42.0 48 0.0016 24.1 4.9 16 76-91 6-21 (49)
29 1cxz_B Protein (PKN); protein- 41.1 1.4E+02 0.0049 24.9 8.6 56 23-97 21-80 (86)
30 1m1j_C Fibrinogen gamma chain; 41.0 54 0.0018 34.9 7.5 75 21-98 32-116 (409)
31 1t2k_D Cyclic-AMP-dependent tr 39.1 50 0.0017 25.4 5.2 21 69-89 39-59 (61)
32 3oja_B Anopheles plasmodium-re 38.6 1.2E+02 0.0041 32.6 10.1 29 69-97 533-561 (597)
33 2lf0_A Uncharacterized protein 37.9 1.1E+02 0.0037 27.2 7.6 52 24-88 7-58 (123)
34 1uii_A Geminin; human, DNA rep 36.6 71 0.0024 26.6 5.9 37 43-94 38-74 (83)
35 2xus_A Breast cancer metastasi 36.4 31 0.0011 26.0 3.4 21 81-101 14-34 (49)
36 2dfs_A Myosin-5A; myosin-V, in 36.4 1.2E+02 0.004 36.2 10.1 29 20-48 921-949 (1080)
37 3ra3_A P1C; coiled coil domain 36.0 17 0.00057 23.7 1.6 20 75-94 2-21 (28)
38 3he4_A Synzip6; heterodimeric 35.8 31 0.0011 25.7 3.2 14 74-87 39-52 (56)
39 1ci6_A Transcription factor AT 35.8 59 0.002 25.3 5.2 25 69-93 33-57 (63)
40 4dci_A Uncharacterized protein 35.5 2.6E+02 0.009 25.6 10.9 72 21-99 30-103 (150)
41 3he5_B Synzip2; heterodimeric 35.2 1.1E+02 0.0039 22.3 6.1 16 71-86 36-51 (52)
42 3c3g_A Alpha/beta peptide with 34.4 55 0.0019 22.7 4.0 23 66-88 7-29 (33)
43 2yy0_A C-MYC-binding protein; 34.3 73 0.0025 24.2 5.3 33 65-97 18-50 (53)
44 3ol1_A Vimentin; structural ge 34.3 1.2E+02 0.0041 26.5 7.6 28 21-48 63-90 (119)
45 3o0z_A RHO-associated protein 33.4 24 0.00083 33.1 3.0 79 19-101 5-83 (168)
46 2r2v_A GCN4 leucine zipper; co 33.1 50 0.0017 23.1 3.7 23 65-87 7-29 (34)
47 1zme_C Proline utilization tra 32.6 35 0.0012 26.2 3.4 22 75-96 46-67 (70)
48 3hnw_A Uncharacterized protein 32.5 1.8E+02 0.0061 26.2 8.5 22 69-90 113-134 (138)
49 2dq0_A Seryl-tRNA synthetase; 32.3 75 0.0026 34.1 7.0 71 20-100 31-103 (455)
50 1gmj_A ATPase inhibitor; coile 32.1 1.3E+02 0.0043 25.2 6.8 24 71-94 56-79 (84)
51 1nkp_B MAX protein, MYC proto- 31.7 69 0.0024 26.0 5.2 31 67-97 48-78 (83)
52 2dgc_A Protein (GCN4); basic d 31.7 58 0.002 25.5 4.5 31 67-97 31-61 (63)
53 1fmh_A General control protein 31.5 50 0.0017 22.2 3.4 18 74-91 2-19 (33)
54 3ghg_C Fibrinogen gamma chain; 31.2 1.2E+02 0.0042 32.2 8.2 75 25-99 43-117 (411)
55 3ghg_A Fibrinogen alpha chain; 31.0 84 0.0029 34.5 7.0 41 24-82 114-154 (562)
56 2hy6_A General control protein 30.7 68 0.0023 22.4 4.0 25 65-89 7-31 (34)
57 3l4f_A RHO guanine nucleotide 29.8 77 0.0026 25.0 4.8 32 19-50 13-44 (61)
58 3he5_A Synzip1; heterodimeric 29.7 50 0.0017 24.0 3.4 18 69-86 6-23 (49)
59 2pnv_A Small conductance calci 29.5 45 0.0016 24.5 3.2 30 68-97 7-40 (43)
60 2oxj_A Hybrid alpha/beta pepti 29.5 73 0.0025 22.2 4.0 22 66-87 8-29 (34)
61 3na7_A HP0958; flagellar bioge 28.7 2.3E+02 0.008 27.5 9.5 33 65-97 89-121 (256)
62 1hjb_A Ccaat/enhancer binding 28.4 78 0.0027 26.5 5.0 32 67-98 44-75 (87)
63 2dq3_A Seryl-tRNA synthetase; 28.4 2.1E+02 0.0071 30.2 9.6 72 20-99 30-101 (425)
64 2bni_A General control protein 28.3 67 0.0023 22.4 3.7 23 65-87 7-29 (34)
65 2lw1_A ABC transporter ATP-bin 28.0 56 0.0019 27.0 4.1 30 71-100 20-49 (89)
66 1ci6_A Transcription factor AT 28.0 1.1E+02 0.0036 23.9 5.4 19 71-89 42-60 (63)
67 3viq_B Mating-type switching p 27.9 45 0.0015 27.9 3.4 30 69-98 4-33 (85)
68 3qne_A Seryl-tRNA synthetase, 27.7 1.2E+02 0.004 33.0 7.5 71 20-100 33-105 (485)
69 2ocy_A RAB guanine nucleotide 27.3 1.7E+02 0.0056 27.1 7.4 24 78-101 77-100 (154)
70 1l8d_A DNA double-strand break 26.7 1.1E+02 0.0038 25.8 5.9 25 24-48 21-45 (112)
71 2fxo_A Myosin heavy chain, car 26.2 2.4E+02 0.0081 24.8 8.1 81 15-99 36-123 (129)
72 2v71_A Nuclear distribution pr 25.7 1.5E+02 0.0053 28.2 7.1 73 17-96 39-111 (189)
73 2wvr_A Geminin; DNA replicatio 25.4 1.1E+02 0.0037 29.6 5.9 29 68-96 117-145 (209)
74 3bas_A Myosin heavy chain, str 25.0 2.9E+02 0.0099 22.7 9.0 30 21-50 15-44 (89)
75 1gu4_A CAAT/enhancer binding p 24.6 64 0.0022 26.5 3.7 31 67-97 44-74 (78)
76 1lwu_B Fibrinogen beta chain; 24.5 1E+02 0.0035 31.7 6.1 31 64-94 26-56 (323)
77 2wt7_A Proto-oncogene protein 23.9 1.4E+02 0.0048 23.1 5.4 22 70-91 27-48 (63)
78 1wle_A Seryl-tRNA synthetase; 23.6 1E+02 0.0036 33.5 6.2 81 20-100 70-150 (501)
79 2z5i_A TM, general control pro 23.3 96 0.0033 23.4 4.2 27 75-101 7-33 (52)
80 3tnu_A Keratin, type I cytoske 22.9 3.8E+02 0.013 23.4 10.0 61 24-99 42-103 (131)
81 1jnm_A Proto-oncogene C-JUN; B 22.8 1.4E+02 0.0049 22.9 5.3 23 69-91 25-47 (62)
82 1wlq_A Geminin; coiled-coil; 2 22.6 1.4E+02 0.0049 24.8 5.4 26 69-94 41-66 (83)
83 1joc_A EEA1, early endosomal a 22.0 1.1E+02 0.0039 26.8 5.1 32 68-99 6-37 (125)
84 1dh3_A Transcription factor CR 21.8 90 0.0031 23.7 3.8 26 68-93 24-49 (55)
85 1t2k_D Cyclic-AMP-dependent tr 21.7 1.7E+02 0.0057 22.4 5.4 30 67-96 30-59 (61)
86 4g1a_A AQ-C16C19 peptide; heli 21.4 43 0.0015 22.4 1.6 15 75-89 2-16 (32)
87 2zvf_A Alanyl-tRNA synthetase; 21.1 2E+02 0.0068 25.8 6.8 32 61-92 27-58 (171)
88 1jnm_A Proto-oncogene C-JUN; B 21.1 64 0.0022 24.9 2.9 22 69-90 39-60 (62)
No 1
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=92.12 E-value=0.33 Score=41.94 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=55.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 17 SNRERKMALLEDVDKLKRKLRHEENVHRALERAFTR--PLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNF 92 (577)
Q Consensus 17 ~~~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~--~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l 92 (577)
+..+||..|++.|.+|++.+++|..=|.+|++..+- ....+.. |..+-.+.-|.-.+|..|++|+-+++..+.++
T Consensus 12 PpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD-~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 12 PPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGD-PASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCC-GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999998761 1111111 33445566666677788888888888877775
No 2
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=82.87 E-value=8.9 Score=36.10 Aligned_cols=84 Identities=19% Similarity=0.054 Sum_probs=49.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCC----C---CCCCCChhHHHHHHHHHHHHHHHHHHH
Q 008123 17 SNRERKMALLEDVDKLKRKLRHEENVHRALERAFT---RPLGSLP----R---LPPYLPPYTLELLAEVAVLEEEVVRLE 86 (577)
Q Consensus 17 ~~~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~---~~~~~~~----~---~~~~lp~~~~eLl~Eia~lE~eV~~LE 86 (577)
.....|.+||+||..||.+|..|+.-|.--..... +-..++- . .-..+-...+.|-.-|..||-|-+.+|
T Consensus 59 ~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 59 ILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44567899999999999999999966543332110 0000000 0 000111234556666677777777777
Q ss_pred ----HHHHHHHHHHhhHH
Q 008123 87 ----EQVVNFRQGLYQEA 100 (577)
Q Consensus 87 ----~~v~~l~~~L~~e~ 100 (577)
=++..|+..+-||-
T Consensus 139 id~~~eLKalQ~~~eqE~ 156 (168)
T 3o0z_A 139 IDLNYKLKSLQQRLEQEV 156 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 55777777777773
No 3
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=69.96 E-value=3.6 Score=26.79 Aligned_cols=20 Identities=40% Similarity=0.517 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008123 68 TLELLAEVAVLEEEVVRLEE 87 (577)
Q Consensus 68 ~~eLl~Eia~lE~eV~~LE~ 87 (577)
--.|-.|||.||-||+-|||
T Consensus 9 narlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 9 NARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHHHhcC
Confidence 34577899999999999986
No 4
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=67.92 E-value=8 Score=27.29 Aligned_cols=27 Identities=37% Similarity=0.372 Sum_probs=21.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 65 PPYTLELLAEVAVLEEEVVRLEEQVVN 91 (577)
Q Consensus 65 p~~~~eLl~Eia~lE~eV~~LE~~v~~ 91 (577)
-.++.|||.|...||.||.+|+.-+-+
T Consensus 7 E~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 357889999999999999998876543
No 5
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=65.05 E-value=14 Score=31.08 Aligned_cols=79 Identities=10% Similarity=0.072 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHH-----------HHHHHHHHHHHHHHH
Q 008123 19 RERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELL-----------AEVAVLEEEVVRLEE 87 (577)
Q Consensus 19 ~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl-----------~Eia~lE~eV~~LE~ 87 (577)
+.+...|.+.+..|+.++++=..+-..|+..=.......+.++.++.....+.+ .+|..||..+..++.
T Consensus 14 q~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~ 93 (107)
T 1fxk_A 14 QQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777787777776666666766433332333444555544433333 334445555555555
Q ss_pred HHHHHHHHHh
Q 008123 88 QVVNFRQGLY 97 (577)
Q Consensus 88 ~v~~l~~~L~ 97 (577)
++..++..||
T Consensus 94 ~l~~lk~~l~ 103 (107)
T 1fxk_A 94 KLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 6
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=64.40 E-value=10 Score=29.23 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008123 18 NRERKMALLEDVDKLKRKLRHEENVHRALERAF 50 (577)
Q Consensus 18 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al 50 (577)
.++.=.+|.||..+|++-|++|+.-|+-||+.+
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~v 47 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLV 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667899999999999999999999999866
No 7
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=64.34 E-value=8.8 Score=40.65 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008123 19 RERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQ 98 (577)
Q Consensus 19 ~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~~ 98 (577)
++....|+|++.++|+.|.+=+.--..-.+- ..+| -..|.+++-.-++-|.-||.||..|++++.+++.++-+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQAATANHT----VMAL---MASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhcchh----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455568888888887776644321111100 0000 01233344445577888899999999999998887765
Q ss_pred H
Q 008123 99 E 99 (577)
Q Consensus 99 e 99 (577)
+
T Consensus 469 ~ 469 (471)
T 3mq9_A 469 L 469 (471)
T ss_dssp H
T ss_pred h
Confidence 5
No 8
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=62.03 E-value=15 Score=32.31 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 008123 25 LLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAE----VAVLEEEVVRLEEQVVNFRQG 95 (577)
Q Consensus 25 LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~E----ia~lE~eV~~LE~~v~~l~~~ 95 (577)
++.++..++.+.++|.++|..+|..+.. .+..+.+ -+-||..|--|.+++.-|+..
T Consensus 46 ~~~~~edfk~KyE~E~~~r~~~E~di~~---------------lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 46 LAEDIMRLREKLQEEMLQREEAENTLQS---------------FRQDVDNASLARLDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH---------------hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888999999999999987632 1333333 234666666666666665543
No 9
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=60.31 E-value=17 Score=31.11 Aligned_cols=80 Identities=10% Similarity=0.089 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHH-----------HHHHHHHHHHHHHHHHHHH
Q 008123 20 ERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTL-----------ELLAEVAVLEEEVVRLEEQ 88 (577)
Q Consensus 20 ~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~-----------eLl~Eia~lE~eV~~LE~~ 88 (577)
.+-..|.+.+..|+.++++=..+-..|+..=.......+.++.++..... .+=.+|..||..+..++++
T Consensus 20 ~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~ 99 (117)
T 2zqm_A 20 QQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEK 99 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666655555555554322222223344444444333 3334455566666666666
Q ss_pred HHHHHHHHhhH
Q 008123 89 VVNFRQGLYQE 99 (577)
Q Consensus 89 v~~l~~~L~~e 99 (577)
+..++..||+-
T Consensus 100 l~~lk~~l~~~ 110 (117)
T 2zqm_A 100 LKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666643
No 10
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=59.63 E-value=19 Score=24.18 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 70 ELLAEVAVLEEEVVRLEEQVVNFRQG 95 (577)
Q Consensus 70 eLl~Eia~lE~eV~~LE~~v~~l~~~ 95 (577)
.|-.|||.|..||+-|.=++..|++.
T Consensus 6 alkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44455555555555555555555444
No 11
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=58.44 E-value=9.6 Score=26.45 Aligned_cols=23 Identities=39% Similarity=0.400 Sum_probs=19.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 008123 65 PPYTLELLAEVAVLEEEVVRLEE 87 (577)
Q Consensus 65 p~~~~eLl~Eia~lE~eV~~LE~ 87 (577)
-.++.|||.|-.-||.||.+|..
T Consensus 6 E~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 6 EAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 35789999999999999999864
No 12
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=57.77 E-value=14 Score=24.88 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 008123 74 EVAVLEEEVVRLEEQVVNFRQGLY 97 (577)
Q Consensus 74 Eia~lE~eV~~LE~~v~~l~~~L~ 97 (577)
|||.|..||+-|.+++..|++++-
T Consensus 3 eiaalkqeiaalkkeiaalkfeia 26 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIA 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888777653
No 13
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=57.20 E-value=40 Score=27.92 Aligned_cols=56 Identities=21% Similarity=0.141 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 25 LLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNF 92 (577)
Q Consensus 25 LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l 92 (577)
|+.+|.+|+.+ -..|+..|..|.. ...=+..+.+|+++++.++.++..++..=..|
T Consensus 27 le~~Ie~LE~~-------i~~le~~ladp~~-----y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 27 LPQLLEDLEAK-------LEALQTQVADASF-----FSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHSTTG-----GGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHhCccc-----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555444 4566666654321 11125689999999999999999888776553
No 14
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=57.17 E-value=14 Score=25.52 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 008123 66 PYTLELLAEVAVLEEEVVRLEEQ 88 (577)
Q Consensus 66 ~~~~eLl~Eia~lE~eV~~LE~~ 88 (577)
.++.|||.+...||.||.+|-.-
T Consensus 7 dKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 7 DKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 57899999999999999998653
No 15
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=52.86 E-value=21 Score=25.15 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 66 PYTLELLAEVAVLEEEVVRLEEQVVN 91 (577)
Q Consensus 66 ~~~~eLl~Eia~lE~eV~~LE~~v~~ 91 (577)
.++.|||.+-..||.||.+|..-+-+
T Consensus 8 ~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 57899999999999999999876544
No 16
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=52.47 E-value=18 Score=26.19 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 73 AEVAVLEEEVVRLEEQVVNFRQGL 96 (577)
Q Consensus 73 ~Eia~lE~eV~~LE~~v~~l~~~L 96 (577)
+|+|.||.|+.-||+++..|+..|
T Consensus 20 eelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999998877655
No 17
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=51.41 E-value=17 Score=25.34 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 008123 65 PPYTLELLAEVAVLEEEVVRLEE 87 (577)
Q Consensus 65 p~~~~eLl~Eia~lE~eV~~LE~ 87 (577)
-.++.|||.+-.-||.||.+|..
T Consensus 7 EdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 7 EDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 35789999999999999999865
No 18
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=51.05 E-value=73 Score=27.99 Aligned_cols=63 Identities=16% Similarity=0.123 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008123 23 MALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQE 99 (577)
Q Consensus 23 ~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~~e 99 (577)
..|+-++.+|+++|..+.+.|.-||..++. +..+==.+|+.|=+-|-.=|+.+.+|++.+.|=
T Consensus 9 ~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~--------------k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 9 KKLQLMLRQANDQLEKTMKDKQELEDFIKQ--------------SSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999998643 455666777888888888888888877776643
No 19
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=50.91 E-value=29 Score=23.36 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 68 TLELLAEVAVLEEEVVRLEEQVVN 91 (577)
Q Consensus 68 ~~eLl~Eia~lE~eV~~LE~~v~~ 91 (577)
+-.|-+|+|..|+|--.|||.|..
T Consensus 3 vaqlekevaqaeaenyqleqevaq 26 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQ 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345677888888888888888876
No 20
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.58 E-value=30 Score=29.76 Aligned_cols=48 Identities=23% Similarity=0.393 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008123 22 KMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQEAV 101 (577)
Q Consensus 22 r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~~e~~ 101 (577)
....+-++.+|+.+|.+|...|.. +|.+...+|+.|.+|-..||.|+-
T Consensus 21 ~~~~~~e~~~L~~~l~eE~~~R~~--------------------------------aE~~~~~ie~ElEeLTasLFeEAN 68 (97)
T 2eqb_B 21 LSDRDDEVKRLREDIAKENELRTK--------------------------------AEEEADKLNKEVEDLTASLFDEAN 68 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666777777777776664 456667788888888888888864
No 21
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=47.29 E-value=94 Score=25.73 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008123 24 ALLEDVDKLKRKLRHEENVHRALERAF 50 (577)
Q Consensus 24 ~LeqeV~~Lq~~L~~E~~~r~~Le~al 50 (577)
.++.+|..++.+.++|.++|..+|.-+
T Consensus 25 n~~~~~edfk~KyE~E~~~R~~~E~d~ 51 (86)
T 3swk_A 25 NLAEDIMRLREKLQEEMLQREEAENTL 51 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999999999876
No 22
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=45.77 E-value=28 Score=24.23 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Q 008123 65 PPYTLELLAEVAVLEEEVVRLEEQ 88 (577)
Q Consensus 65 p~~~~eLl~Eia~lE~eV~~LE~~ 88 (577)
-.++.+||.|-..||.||.+|..-
T Consensus 7 EdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 7 EXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 357899999999999999998653
No 23
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.45 E-value=39 Score=40.29 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008123 71 LLAEVAVLEEEVVRLEEQVVNFR 93 (577)
Q Consensus 71 Ll~Eia~lE~eV~~LE~~v~~l~ 93 (577)
|=..|+-||.|...||+++.+|.
T Consensus 1021 L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666655
No 24
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=44.43 E-value=39 Score=24.67 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008123 69 LELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (577)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE~~v~~l~~~L~ 97 (577)
-|||.-|.-+-.||.+-|++|..|+..+-
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888888888888888877664
No 25
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=44.27 E-value=88 Score=33.13 Aligned_cols=72 Identities=25% Similarity=0.283 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008123 19 RERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQ 98 (577)
Q Consensus 19 ~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~~ 98 (577)
-+.=.+|.++-..|+.++++=++-|..+.+.++... ...+.+|++|+..|-++|..||+++..+..+|..
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAP----------PEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777888888888888888889999887511 1468899999999999999999999998888876
Q ss_pred HH
Q 008123 99 EA 100 (577)
Q Consensus 99 e~ 100 (577)
..
T Consensus 97 ~~ 98 (421)
T 1ses_A 97 LL 98 (421)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 26
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=42.91 E-value=5.2 Score=26.03 Aligned_cols=16 Identities=50% Similarity=0.584 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 008123 73 AEVAVLEEEVVRLEEQ 88 (577)
Q Consensus 73 ~Eia~lE~eV~~LE~~ 88 (577)
+.+.-||.||-+||.+
T Consensus 8 anvkrlekevgklege 23 (28)
T 4dac_A 8 ANVKRLEKEVGKLEGE 23 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhhhhhh
Confidence 3444444444444443
No 27
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=42.77 E-value=75 Score=27.47 Aligned_cols=55 Identities=25% Similarity=0.458 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 28 DVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVV 90 (577)
Q Consensus 28 eV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~ 90 (577)
+|.+|...++++...-.=+-.+|+++.+.- .-+. --||.+|+..||.|. |+++++
T Consensus 7 kVe~lmDei~E~~e~~~EI~e~Ls~~~~~~----~~~D--EdELe~ELe~Le~e~--l~~~~l 61 (104)
T 3um3_B 7 KVDELMQDIADQQELAEEISTAISKPVGFG----EEFD--EDELMAELEELEQEE--LDKNLL 61 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCC----CCCC--HHHHHHHHHHHHHHH--HHHHhh
Confidence 589999999999999999999998765421 1122 378889988888663 444443
No 28
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=41.99 E-value=48 Score=24.08 Aligned_cols=16 Identities=44% Similarity=0.478 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 008123 76 AVLEEEVVRLEEQVVN 91 (577)
Q Consensus 76 a~lE~eV~~LE~~v~~ 91 (577)
|.||.||+.||.+-..
T Consensus 6 aqlenevaslenenet 21 (49)
T 3he5_A 6 AQLENEVASLENENET 21 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHH
Confidence 4444444444444333
No 29
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=41.14 E-value=1.4e+02 Score=24.92 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Q 008123 23 MALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAE----VAVLEEEVVRLEEQVVNFRQGLY 97 (577)
Q Consensus 23 ~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~E----ia~lE~eV~~LE~~v~~l~~~L~ 97 (577)
..||+..+.|++++++|..++.--|+.+ +-..+ .+-||.|+.....++..|+.+|.
T Consensus 21 ~~le~~r~~ir~eI~KElKiKeGaENL~-------------------katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~ 80 (86)
T 1cxz_B 21 QQLELERERLRREIRKELKLKEGAENLR-------------------RATTDLGRSLGPVELLLRGSSRRLDLLHQQLQ 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHHHH-------------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5588889999999999998888666533 33333 56788899999999999888875
No 30
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=41.01 E-value=54 Score=34.89 Aligned_cols=75 Identities=11% Similarity=0.207 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhCCCCCCCCCCCCC---CChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 21 RKMALLEDVDKLKRKLRHEENVH-------RALERAFTRPLGSLPRLPPY---LPPYTLELLAEVAVLEEEVVRLEEQVV 90 (577)
Q Consensus 21 ~r~~LeqeV~~Lq~~L~~E~~~r-------~~Le~al~~~~~~~~~~~~~---lp~~~~eLl~Eia~lE~eV~~LE~~v~ 90 (577)
.+..+..+|.+|+..|++=.++. .++....+.. .+..+.. .-.+.++++.||..+|.-|..-|.+|.
T Consensus 32 ~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~---Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~ 108 (409)
T 1m1j_C 32 YRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSE---KQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQ 108 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS---TTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 44445555666655555444433 3334333321 2222221 245677899999999998877777777
Q ss_pred HHHHHHhh
Q 008123 91 NFRQGLYQ 98 (577)
Q Consensus 91 ~l~~~L~~ 98 (577)
.|+..|-.
T Consensus 109 ~l~~~~~~ 116 (409)
T 1m1j_C 109 QLTDMHIM 116 (409)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77765543
No 31
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=39.09 E-value=50 Score=25.42 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008123 69 LELLAEVAVLEEEVVRLEEQV 89 (577)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE~~v 89 (577)
.+|-.||..|+.||..|.+.+
T Consensus 39 ~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 39 GQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555544
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.56 E-value=1.2e+02 Score=32.64 Aligned_cols=29 Identities=31% Similarity=0.189 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008123 69 LELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (577)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE~~v~~l~~~L~ 97 (577)
+++-++..-+|.|+..||+++...+.++.
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence 55556666666777777776666555444
No 33
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=37.94 E-value=1.1e+02 Score=27.17 Aligned_cols=52 Identities=23% Similarity=0.238 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 008123 24 ALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQ 88 (577)
Q Consensus 24 ~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~ 88 (577)
.|.+|+.+|..+|+ ..++=|..|..+.. ...+.++..||+.|+.+|.+|..+
T Consensus 7 ~~K~Eiq~L~drLD---~~~rKlaaa~~rgd----------~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 7 VEKNEIKRLSDRLD---AIRHQQADLSLVEA----------ADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp SHHHHHHHHHHHHH---HHHHHHHHSCTTTC----------TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999997 46777777765532 234677777777777777777544
No 34
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=36.64 E-value=71 Score=26.64 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 43 HRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQ 94 (577)
Q Consensus 43 r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~ 94 (577)
|.||+.||. .-+.|-.+|..+++||+.|++....|+-
T Consensus 38 R~AL~eaL~---------------EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 38 RKALYEALK---------------ENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777763 3477888899999999999998888764
No 35
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=36.39 E-value=31 Score=26.04 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHH
Q 008123 81 EVVRLEEQVVNFRQGLYQEAV 101 (577)
Q Consensus 81 eV~~LE~~v~~l~~~L~~e~~ 101 (577)
+++.||++-..||-+||+|+.
T Consensus 14 ~l~~LEkqF~~LkEqlY~ERl 34 (49)
T 2xus_A 14 EMLDLEKQFSELKEKLFRERL 34 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999975
No 36
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=36.35 E-value=1.2e+02 Score=36.22 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 20 ERKMALLEDVDKLKRKLRHEENVHRALER 48 (577)
Q Consensus 20 ~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~ 48 (577)
+....||.+|.+||.+|+++++.+..|..
T Consensus 921 ~~~~~LE~kl~eLq~rL~~~e~~n~~L~~ 949 (1080)
T 2dfs_A 921 KLHIGLENKIMQLQRKIDEQNKEYKSLLE 949 (1080)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888777666665554
No 37
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=35.98 E-value=17 Score=23.67 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008123 75 VAVLEEEVVRLEEQVVNFRQ 94 (577)
Q Consensus 75 ia~lE~eV~~LE~~v~~l~~ 94 (577)
|..||-|---|||++..|++
T Consensus 2 idalefendaleqkiaalkq 21 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQ 21 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHH
Confidence 34455555556666655444
No 38
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=35.84 E-value=31 Score=25.67 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 008123 74 EVAVLEEEVVRLEE 87 (577)
Q Consensus 74 Eia~lE~eV~~LE~ 87 (577)
+||-||.+|++||.
T Consensus 39 dianlekdianler 52 (56)
T 3he4_A 39 DIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 39
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.81 E-value=59 Score=25.35 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 69 LELLAEVAVLEEEVVRLEEQVVNFR 93 (577)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE~~v~~l~ 93 (577)
++|=.+-+.|+.+|..|+.++..|+
T Consensus 33 ~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 33 KELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555544444
No 40
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=35.49 E-value=2.6e+02 Score=25.59 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 008123 21 RKMALLEDVDKLKRKLRH-EENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEV-AVLEEEVVRLEEQVVNFRQGLYQ 98 (577)
Q Consensus 21 ~r~~LeqeV~~Lq~~L~~-E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Ei-a~lE~eV~~LE~~v~~l~~~L~~ 98 (577)
....|++.+.++..+|++ |+..++++...-..+. ..+++.+++=|+.| ..+|.|...++++...|.+++-|
T Consensus 30 l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~-------~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~q 102 (150)
T 4dci_A 30 AEREISNGIANADQQLAQLEQEGQTVVDQVRRQSA-------NPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQ 102 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566667777777654 6777777755432221 12457888888888 89999999999999998888875
Q ss_pred H
Q 008123 99 E 99 (577)
Q Consensus 99 e 99 (577)
=
T Consensus 103 v 103 (150)
T 4dci_A 103 V 103 (150)
T ss_dssp H
T ss_pred H
Confidence 4
No 41
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=35.21 E-value=1.1e+02 Score=22.34 Aligned_cols=16 Identities=50% Similarity=0.536 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 008123 71 LLAEVAVLEEEVVRLE 86 (577)
Q Consensus 71 Ll~Eia~lE~eV~~LE 86 (577)
|-.|||-||.||+.-|
T Consensus 36 lrdeiarlenevashe 51 (52)
T 3he5_B 36 LRDEIARLENEVASHE 51 (52)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhhcc
Confidence 4456666666665444
No 42
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=34.36 E-value=55 Score=22.68 Aligned_cols=23 Identities=13% Similarity=0.230 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 008123 66 PYTLELLAEVAVLEEEVVRLEEQ 88 (577)
Q Consensus 66 ~~~~eLl~Eia~lE~eV~~LE~~ 88 (577)
.++.|||.+=..||.||.+|..-
T Consensus 7 dKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 7 XKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 57889999999999999998653
No 43
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.27 E-value=73 Score=24.20 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=30.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008123 65 PPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (577)
Q Consensus 65 p~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~ 97 (577)
+..+-.|..|++-|-.+|..|.+++..|+.+|-
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568899999999999999999999999888875
No 44
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=34.26 E-value=1.2e+02 Score=26.46 Aligned_cols=28 Identities=11% Similarity=0.228 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 21 RKMALLEDVDKLKRKLRHEENVHRALER 48 (577)
Q Consensus 21 ~r~~LeqeV~~Lq~~L~~E~~~r~~Le~ 48 (577)
.|.++|.|+..|++.++++.-.|.-||.
T Consensus 63 ~r~~~E~di~~lrK~lD~~~l~r~dLE~ 90 (119)
T 3ol1_A 63 QREEAENTLQSFRQDVDNASLARLDLER 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 3555556666666666555555554443
No 45
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=33.40 E-value=24 Score=33.13 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008123 19 RERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQ 98 (577)
Q Consensus 19 ~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~~ 98 (577)
.++-..||..+..++..|+.|.+-..=|.+..+--.-.. ..+-..+.||=.=++.|+..-..||+++..|+.+|-+
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~----~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSI----SQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355568999999999999999886666665443100000 1133456777778899999999999999999999999
Q ss_pred HHH
Q 008123 99 EAV 101 (577)
Q Consensus 99 e~~ 101 (577)
|+-
T Consensus 81 Er~ 83 (168)
T 3o0z_A 81 ERR 83 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 973
No 46
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=33.07 E-value=50 Score=23.05 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=19.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 008123 65 PPYTLELLAEVAVLEEEVVRLEE 87 (577)
Q Consensus 65 p~~~~eLl~Eia~lE~eV~~LE~ 87 (577)
-.++.|||.+-..||.||.+|-+
T Consensus 7 edKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 7 ADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 35789999999999999998865
No 47
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=32.65 E-value=35 Score=26.20 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008123 75 VAVLEEEVVRLEEQVVNFRQGL 96 (577)
Q Consensus 75 ia~lE~eV~~LE~~v~~l~~~L 96 (577)
|..||..|..||+.|..|+..|
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777766544
No 48
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=32.55 E-value=1.8e+02 Score=26.17 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008123 69 LELLAEVAVLEEEVVRLEEQVV 90 (577)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE~~v~ 90 (577)
.+|-.|+..|+.++++||.++.
T Consensus 113 ~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 113 KELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555443
No 49
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=32.34 E-value=75 Score=34.08 Aligned_cols=71 Identities=13% Similarity=0.144 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008123 20 ERKMALLEDVDKLKRKLRHEENVHRALERAFTR--PLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (577)
Q Consensus 20 ~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~--~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~ 97 (577)
+.=.+|.++-.+|+.++++=++-|..+.+.++. ..+ ..+.+|++|+..|-++|..||+++..+..+|.
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKG----------EPVDELLAKSREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC----------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777777777777777763 112 24589999999999999999999999888887
Q ss_pred hHH
Q 008123 98 QEA 100 (577)
Q Consensus 98 ~e~ 100 (577)
...
T Consensus 101 ~~~ 103 (455)
T 2dq0_A 101 YYL 103 (455)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 50
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=32.12 E-value=1.3e+02 Score=25.18 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 71 LLAEVAVLEEEVVRLEEQVVNFRQ 94 (577)
Q Consensus 71 Ll~Eia~lE~eV~~LE~~v~~l~~ 94 (577)
-..||.-||.+|-++.+.|..|..
T Consensus 56 h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 56 HAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345666677777777666666543
No 51
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=31.69 E-value=69 Score=25.97 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008123 67 YTLELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (577)
Q Consensus 67 ~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~ 97 (577)
.++.|-.++..|+.|+..|+++...|+.+|-
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777788888888888888888777764
No 52
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.68 E-value=58 Score=25.48 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008123 67 YTLELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (577)
Q Consensus 67 ~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~ 97 (577)
.+.+|=.+|+.|+.+-..|+.+|..|+.+|.
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777778888888888888888777664
No 53
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=31.50 E-value=50 Score=22.19 Aligned_cols=18 Identities=44% Similarity=0.497 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008123 74 EVAVLEEEVVRLEEQVVN 91 (577)
Q Consensus 74 Eia~lE~eV~~LE~~v~~ 91 (577)
|+|.||.||+.-|-.--.
T Consensus 2 evaqlekevaqaeaenyq 19 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQ 19 (33)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhH
Confidence 688888888877765444
No 54
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=31.18 E-value=1.2e+02 Score=32.23 Aligned_cols=75 Identities=11% Similarity=0.178 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008123 25 LLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQE 99 (577)
Q Consensus 25 LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~~e 99 (577)
||..|.++...=..=+.+=.+|...+...--..|..-..+-.+.++.|.|+..+|.-|.+.+.+|..|+..+...
T Consensus 43 L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~ 117 (411)
T 3ghg_C 43 LEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSN 117 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 444444444433344445555555554322222221123445677899999999999999999998888776543
No 55
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.04 E-value=84 Score=34.45 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 008123 24 ALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEV 82 (577)
Q Consensus 24 ~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV 82 (577)
+|++.+..||.+++.+...-++|+..| .+++.||--||-+|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnL------------------edq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNV------------------RAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHH
Confidence 677777777777777777777777754 66666666666665
No 56
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=30.68 E-value=68 Score=22.36 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=20.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH
Q 008123 65 PPYTLELLAEVAVLEEEVVRLEEQV 89 (577)
Q Consensus 65 p~~~~eLl~Eia~lE~eV~~LE~~v 89 (577)
-.++.|||.+=..||.||.+|-.-+
T Consensus 7 EdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 7 ADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3578999999999999999986543
No 57
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=29.83 E-value=77 Score=24.96 Aligned_cols=32 Identities=25% Similarity=0.462 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008123 19 RERKMALLEDVDKLKRKLRHEENVHRALERAF 50 (577)
Q Consensus 19 ~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al 50 (577)
+..-.+|.||..++++=|.+|...|+-||+.+
T Consensus 13 kDev~eLk~e~k~~k~~le~eqraRk~LE~~v 44 (61)
T 3l4f_A 13 KDEVQELRQDNKKMKKSLEEEQRARKDLEKLV 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999999999999999999876
No 58
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=29.74 E-value=50 Score=23.95 Aligned_cols=18 Identities=44% Similarity=0.423 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008123 69 LELLAEVAVLEEEVVRLE 86 (577)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE 86 (577)
-.|=.|+|.||.|-.-|.
T Consensus 6 aqlenevaslenenetlk 23 (49)
T 3he5_A 6 AQLENEVASLENENETLK 23 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHH
Confidence 456678999998744333
No 59
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=29.51 E-value=45 Score=24.46 Aligned_cols=30 Identities=13% Similarity=0.367 Sum_probs=23.5
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Q 008123 68 TLELLAEV----AVLEEEVVRLEEQVVNFRQGLY 97 (577)
Q Consensus 68 ~~eLl~Ei----a~lE~eV~~LE~~v~~l~~~L~ 97 (577)
+-+|+.|+ ..||.-|..||.++.+|...|.
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666 4699999999999999887763
No 60
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=29.48 E-value=73 Score=22.20 Aligned_cols=22 Identities=41% Similarity=0.482 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 008123 66 PYTLELLAEVAVLEEEVVRLEE 87 (577)
Q Consensus 66 ~~~~eLl~Eia~lE~eV~~LE~ 87 (577)
.++.|||.|=..||.||.+|..
T Consensus 8 ~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 8 XKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHH
Confidence 5788999999999999998864
No 61
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=28.72 E-value=2.3e+02 Score=27.49 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=25.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008123 65 PPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (577)
Q Consensus 65 p~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~ 97 (577)
+.....|-.||..++.++..||.++..+...+-
T Consensus 89 ~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie 121 (256)
T 3na7_A 89 ERELRSLNIEEDIAKERSNQANREIENLQNEIK 121 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888887665553
No 62
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=28.40 E-value=78 Score=26.51 Aligned_cols=32 Identities=31% Similarity=0.359 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008123 67 YTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQ 98 (577)
Q Consensus 67 ~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~~ 98 (577)
.+.+|-.|=+.|+.+|..|++++..|+.-|.+
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777777766654
No 63
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.40 E-value=2.1e+02 Score=30.23 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008123 20 ERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQE 99 (577)
Q Consensus 20 ~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~~e 99 (577)
+.=.+|.++-.+|+.++++=++-|..+.+.++.....- ..+.+|++|+..|-++|..||+++..+..+|...
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREG--------KDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSC--------SCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567777888888888888888889998887421111 1234555555555556666666665555555444
No 64
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=28.35 E-value=67 Score=22.41 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=19.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 008123 65 PPYTLELLAEVAVLEEEVVRLEE 87 (577)
Q Consensus 65 p~~~~eLl~Eia~lE~eV~~LE~ 87 (577)
-.++.|||.+=..||.||.+|..
T Consensus 7 EdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 7 EDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHH
Confidence 35788999999999999999865
No 65
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=27.98 E-value=56 Score=27.00 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008123 71 LLAEVAVLEEEVVRLEEQVVNFRQGLYQEA 100 (577)
Q Consensus 71 Ll~Eia~lE~eV~~LE~~v~~l~~~L~~e~ 100 (577)
+=.|+..||.+|..||.++..|..+|..-.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~ 49 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADAS 49 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 446788888888888888888888776543
No 66
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=27.96 E-value=1.1e+02 Score=23.87 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008123 71 LLAEVAVLEEEVVRLEEQV 89 (577)
Q Consensus 71 Ll~Eia~lE~eV~~LE~~v 89 (577)
|-.+|+.|+.||..|.+-+
T Consensus 42 L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 42 LKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555554433
No 67
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=27.93 E-value=45 Score=27.95 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008123 69 LELLAEVAVLEEEVVRLEEQVVNFRQGLYQ 98 (577)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE~~v~~l~~~L~~ 98 (577)
..|-++|+.|++++..|++++..++.+|.+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~ 33 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKN 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467788999999999999999888877764
No 68
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.72 E-value=1.2e+02 Score=33.03 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008123 20 ERKMALLEDVDKLKRKLRHEENVHRALERAFTRP--LGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (577)
Q Consensus 20 ~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~--~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~ 97 (577)
+.=.+|.++-.+|+.++++=++-|..+-+.++.. .+ ..+.+|++|+..|-++|..||+++..+..+|.
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~----------~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAK----------EDAKDLIAEKEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666666666666666655421 11 13578999999999999999999999888887
Q ss_pred hHH
Q 008123 98 QEA 100 (577)
Q Consensus 98 ~e~ 100 (577)
...
T Consensus 103 ~~l 105 (485)
T 3qne_A 103 SKI 105 (485)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 69
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.31 E-value=1.7e+02 Score=27.09 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Q 008123 78 LEEEVVRLEEQVVNFRQGLYQEAV 101 (577)
Q Consensus 78 lE~eV~~LE~~v~~l~~~L~~e~~ 101 (577)
.|.+...+|+.|.+|=..||.|+-
T Consensus 77 aE~~~~~ie~ElEeLTasLFeEAN 100 (154)
T 2ocy_A 77 AEEEADKLNKEVEDLTASLFDEAN 100 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777888888888888888864
No 70
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.74 E-value=1.1e+02 Score=25.79 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 24 ALLEDVDKLKRKLRHEENVHRALER 48 (577)
Q Consensus 24 ~LeqeV~~Lq~~L~~E~~~r~~Le~ 48 (577)
.|.++...++.++..=......|+.
T Consensus 21 ~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 21 EITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444443333344433
No 71
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=26.17 E-value=2.4e+02 Score=24.78 Aligned_cols=81 Identities=15% Similarity=0.205 Sum_probs=47.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHH-------HHHHHHHH
Q 008123 15 RRSNRERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLE-------EEVVRLEE 87 (577)
Q Consensus 15 ~~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE-------~eV~~LE~ 87 (577)
+....+....|.++...|+.+|+.|...-.-.+--+.+=.. --.-|..++.+|...+.-.| .+--+||+
T Consensus 36 r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~----~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~ 111 (129)
T 2fxo_A 36 RKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIK----NKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLED 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456678899999999999999998774333322211000 00123445555555555433 33445677
Q ss_pred HHHHHHHHHhhH
Q 008123 88 QVVNFRQGLYQE 99 (577)
Q Consensus 88 ~v~~l~~~L~~e 99 (577)
++.+|+.+|-..
T Consensus 112 e~~~Lk~~led~ 123 (129)
T 2fxo_A 112 ECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777654
No 72
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=25.67 E-value=1.5e+02 Score=28.17 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=43.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 17 SNRERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGL 96 (577)
Q Consensus 17 ~~~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L 96 (577)
+.++.-.+||.++.++++++.+-..-..-|..=+..-. ..+-..-.+.-..|..|+.||..|-.....|+..|
T Consensus 39 sSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k-------~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 39 GSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALK-------EKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778889999998888877776666654432100 00001112333347777777777777766666655
No 73
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.38 E-value=1.1e+02 Score=29.57 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 68 TLELLAEVAVLEEEVVRLEEQVVNFRQGL 96 (577)
Q Consensus 68 ~~eLl~Eia~lE~eV~~LE~~v~~l~~~L 96 (577)
-+.|-.+|..+++||..|++....|+.-.
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788889999999999998888876533
No 74
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=25.01 E-value=2.9e+02 Score=22.74 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008123 21 RKMALLEDVDKLKRKLRHEENVHRALERAF 50 (577)
Q Consensus 21 ~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al 50 (577)
.-.+++.++.+|+..|+.+...|.-|+.-+
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~ 44 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQN 44 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999853
No 75
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=24.58 E-value=64 Score=26.48 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008123 67 YTLELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (577)
Q Consensus 67 ~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~ 97 (577)
.+.+|-.|=+.|+.+|..|++++..|+.-|.
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777665444
No 76
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=24.51 E-value=1e+02 Score=31.70 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=24.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 64 LPPYTLELLAEVAVLEEEVVRLEEQVVNFRQ 94 (577)
Q Consensus 64 lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~ 94 (577)
+|.+++.|-.++..|++.|.+||.+|..+..
T Consensus 26 ~~~~I~~Lq~~le~L~~KI~~LE~~v~~q~~ 56 (323)
T 1lwu_B 26 VAGSLRSMKSVLEHLRAKMQRMEEAIKTQKE 56 (323)
T ss_dssp THHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888888888876443
No 77
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=23.87 E-value=1.4e+02 Score=23.06 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008123 70 ELLAEVAVLEEEVVRLEEQVVN 91 (577)
Q Consensus 70 eLl~Eia~lE~eV~~LE~~v~~ 91 (577)
+|-.++..|+.+-..|..+|..
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~ 48 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIAN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444434333333
No 78
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=23.55 E-value=1e+02 Score=33.47 Aligned_cols=81 Identities=14% Similarity=0.157 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008123 20 ERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQE 99 (577)
Q Consensus 20 ~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~~e 99 (577)
+.=.+|.++-..|+.++++=++-|..+.+.++.....-......-...+.+|++|+..|-++|..||+++..+..+|...
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666666666554210000000000113678999999999999999999999988888866
Q ss_pred H
Q 008123 100 A 100 (577)
Q Consensus 100 ~ 100 (577)
.
T Consensus 150 l 150 (501)
T 1wle_A 150 A 150 (501)
T ss_dssp H
T ss_pred H
Confidence 4
No 79
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=23.35 E-value=96 Score=23.41 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008123 75 VAVLEEEVVRLEEQVVNFRQGLYQEAV 101 (577)
Q Consensus 75 ia~lE~eV~~LE~~v~~l~~~L~~e~~ 101 (577)
-.-.|-.|.+||+.|+.|-..|+.+..
T Consensus 7 aefAERsV~KLek~ID~LEdeL~~eKe 33 (52)
T 2z5i_A 7 NYHLENEVARLKKLVDDLEDELYAQKL 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344578888888888888888887753
No 80
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.92 E-value=3.8e+02 Score=23.40 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008123 24 ALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTL-ELLAEVAVLEEEVVRLEEQVVNFRQGLYQE 99 (577)
Q Consensus 24 ~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~-eLl~Eia~lE~eV~~LE~~v~~l~~~L~~e 99 (577)
.|..-|..|+-+|+.-..++..||+.+.. +. ..=.++..+...|..||..+..+|.++-++
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e---------------~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEE---------------TKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667888999999999999999998732 11 112245555566666666666666555443
No 81
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.79 E-value=1.4e+02 Score=22.86 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008123 69 LELLAEVAVLEEEVVRLEEQVVN 91 (577)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE~~v~~ 91 (577)
.+|-.++..||.+-..|..+|..
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~ 47 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANM 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 82
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=22.64 E-value=1.4e+02 Score=24.79 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 69 LELLAEVAVLEEEVVRLEEQVVNFRQ 94 (577)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE~~v~~l~~ 94 (577)
..|-.+|..+++||..|.+....|+-
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888888888877654
No 83
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.97 E-value=1.1e+02 Score=26.77 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008123 68 TLELLAEVAVLEEEVVRLEEQVVNFRQGLYQE 99 (577)
Q Consensus 68 ~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~~e 99 (577)
-..||+...-.|.||..|..++.+|+..|...
T Consensus 6 ~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~ 37 (125)
T 1joc_A 6 RRALLERCLKGEGEIEKLQTKVLELQRKLDNT 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 46788888899999999999999999888643
No 84
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.75 E-value=90 Score=23.71 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 68 TLELLAEVAVLEEEVVRLEEQVVNFR 93 (577)
Q Consensus 68 ~~eLl~Eia~lE~eV~~LE~~v~~l~ 93 (577)
+.+|=.+|+.||.|-..|..++..|+
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666555555555544
No 85
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=21.72 E-value=1.7e+02 Score=22.37 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 67 YTLELLAEVAVLEEEVVRLEEQVVNFRQGL 96 (577)
Q Consensus 67 ~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L 96 (577)
.+.+|=.|-..|..+|..|+.++..|+..|
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666666554
No 86
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=21.35 E-value=43 Score=22.37 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q 008123 75 VAVLEEEVVRLEEQV 89 (577)
Q Consensus 75 ia~lE~eV~~LE~~v 89 (577)
||.||..|+-|||+-
T Consensus 2 iaaleqkiaaleqkc 16 (32)
T 4g1a_A 2 IAALEQKIAALEQKC 16 (32)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 455666666665543
No 87
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=21.13 E-value=2e+02 Score=25.83 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=25.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008123 61 PPYLPPYTLELLAEVAVLEEEVVRLEEQVVNF 92 (577)
Q Consensus 61 ~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l 92 (577)
|.-+|..+..|+.|+..+|.|+..|.+++...
T Consensus 27 ~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 27 PAKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888888888888888888888777663
No 88
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.09 E-value=64 Score=24.92 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008123 69 LELLAEVAVLEEEVVRLEEQVV 90 (577)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE~~v~ 90 (577)
.+|-.+|..|+.||..|.+.++
T Consensus 39 ~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 39 SELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655543
Done!