Query 008123
Match_columns 577
No_of_seqs 271 out of 553
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 18:40:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008123.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008123hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 67.3 16 0.0012 29.1 9.6 71 20-100 28-98 (110)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 46.3 23 0.0017 28.1 6.9 76 24-99 19-98 (107)
3 d1ivsa1 a.2.7.3 (A:797-862) Va 26.2 1.1E+02 0.0077 21.9 7.6 62 25-91 2-64 (66)
4 d1nlwa_ a.38.1.1 (A:) Mad prot 20.7 67 0.0049 23.7 5.1 30 68-97 49-78 (79)
5 d2azeb1 e.63.1.2 (B:201-301) T 19.6 74 0.0054 25.2 5.3 32 67-98 2-33 (101)
6 d1cxzb_ a.2.6.1 (B:) Protein k 18.2 2E+02 0.015 22.1 7.5 64 19-97 17-80 (86)
7 d1nkpa_ a.38.1.1 (A:) Myc prot 15.6 1.1E+02 0.0083 22.8 5.4 21 73-93 52-72 (88)
8 d2bz1a1 c.144.1.1 (A:1-174) GT 15.0 44 0.0032 28.9 3.0 46 458-503 26-85 (174)
9 d1v74b_ a.24.20.1 (B:) Colicin 13.6 42 0.0031 26.2 2.1 17 275-291 38-54 (87)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 10.8 1.4E+02 0.01 23.7 4.9 31 67-97 2-32 (133)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=67.33 E-value=16 Score=29.15 Aligned_cols=71 Identities=25% Similarity=0.297 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008123 20 ERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQE 99 (577)
Q Consensus 20 ~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~~e 99 (577)
+.=.+|.++...|+.++++=++-|..+.+.++... +..+.+|++|+..|-.+|..||+++..+..+++.-
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~----------~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAP----------PEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777777777777888888886421 35678999999999999999999999988887765
Q ss_pred H
Q 008123 100 A 100 (577)
Q Consensus 100 ~ 100 (577)
.
T Consensus 98 l 98 (110)
T d1seta1 98 L 98 (110)
T ss_dssp H
T ss_pred H
Confidence 4
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=46.32 E-value=23 Score=28.12 Aligned_cols=76 Identities=13% Similarity=0.044 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008123 24 ALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLA----EVAVLEEEVVRLEEQVVNFRQGLYQE 99 (577)
Q Consensus 24 ~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~----Eia~lE~eV~~LE~~v~~l~~~L~~e 99 (577)
.+.+.+.+|+.++++=..+-..|+..=......-..+|.+++....+++. .+..++.+|..|++++..+...+..=
T Consensus 19 ~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~ 98 (107)
T d1fxka_ 19 AISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666555555555543222222223344556655555554 46789999999999999888777643
No 3
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=26.17 E-value=1.1e+02 Score=21.88 Aligned_cols=62 Identities=15% Similarity=0.066 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhH-HHHHHHHHHHHHHHHHHHHHHHH
Q 008123 25 LLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYT-LELLAEVAVLEEEVVRLEEQVVN 91 (577)
Q Consensus 25 LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~-~eLl~Eia~lE~eV~~LE~~v~~ 91 (577)
++.|+.+|+++|..=..--..++.-|+.+.- . .--|+.+ .+--.-++.++.++..|++.+..
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~kL~N~~F-~----~kAP~~Vv~~~k~kl~~~~~~~~~l~~~l~~ 64 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQRKLASPGF-R----EKAPKEVVEAEEARLKENLEQAERIREALSQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTH-H----HHSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCChHH-H----HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788899999998888888888888865421 1 1124333 33334466677777777777765
No 4
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.69 E-value=67 Score=23.73 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008123 68 TLELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (577)
Q Consensus 68 ~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~ 97 (577)
++.|-.++..++.++..|..+...|+.+|-
T Consensus 49 I~~L~~~~~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555667777777777777777666653
No 5
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.61 E-value=74 Score=25.23 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008123 67 YTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQ 98 (577)
Q Consensus 67 ~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~~ 98 (577)
+.+.|=+||+-|+++-..|.+++..++.+|..
T Consensus 2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~ 33 (101)
T d2azeb1 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRL 33 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999998888864
No 6
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.17 E-value=2e+02 Score=22.08 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008123 19 RERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (577)
Q Consensus 19 ~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~ 97 (577)
...+..||..-+.|++++++|-.|+.--|+.+.- |..-=.-.+.||.|+..--.++..|+.+|-
T Consensus 17 ~~~q~~le~~r~~lr~eI~KELKIKeGAENL~~a---------------ttd~kk~~~~V~~eL~~sN~kL~~L~~eL~ 80 (86)
T d1cxzb_ 17 PGVQQQLELERERLRREIRKELKLKEGAENLRRA---------------TTDLGRSLGPVELLLRGSSRRLDLLHQQLQ 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHH---------------HccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467789999999999999999999877765521 000001123588888888888888888775
No 7
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.63 E-value=1.1e+02 Score=22.84 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008123 73 AEVAVLEEEVVRLEEQVVNFR 93 (577)
Q Consensus 73 ~Eia~lE~eV~~LE~~v~~l~ 93 (577)
.-|-.|+.++..|+.++..|+
T Consensus 52 ~yI~~L~~~~~~l~~~~~~l~ 72 (88)
T d1nkpa_ 52 AYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 8
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]}
Probab=14.95 E-value=44 Score=28.87 Aligned_cols=46 Identities=28% Similarity=0.285 Sum_probs=30.3
Q ss_pred CCCCeeeEeeccCCCC--CCC-ccccchhhH-----------HHHHHHHHHHHHhhccCc
Q 008123 458 WSEPLVTFALCCGSWS--SPA-VRVYTASQV-----------EEELEAAKKDYLQAAIGI 503 (577)
Q Consensus 458 ~~ePrIhFAL~cGs~S--~P~-lRvYta~~v-----------~~qLe~A~~efl~a~v~V 503 (577)
..|..+||||+.|.++ .|+ |||-...-+ ..+|+.|.+..-....||
T Consensus 26 ~~~~~~HlALvkG~i~~~~~vlVRVHs~~~~~Dv~~~~~~~~~~~L~~al~~I~~~g~Gv 85 (174)
T d2bz1a1 26 LATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCDCGFQLEAALTQIAEEGRGI 85 (174)
T ss_dssp TTTCCEEEEEEESCCCSSSCEEEEEEECCHHHHTSCCSSCSHHHHHHHHHHHHHHHTSEE
T ss_pred CCCCeEEEEEEEcCcccccceeEEeeecccccceecccccccchhHHHHHHHHHHcCCcE
Confidence 4577899999999765 334 587544333 347777777666665554
No 9
>d1v74b_ a.24.20.1 (B:) Colicin D immunity protein {Escherichia coli [TaxId: 562]}
Probab=13.64 E-value=42 Score=26.20 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=15.2
Q ss_pred ccchHHHHhHHHHHHHH
Q 008123 275 NKVSEDTVRCLSSIFVR 291 (577)
Q Consensus 275 n~lSE~mvrC~~~i~~~ 291 (577)
++++.++-.|++.|||-
T Consensus 38 ~~~~~~l~eClssiF~~ 54 (87)
T d1v74b_ 38 KDLSPNILNCGEELFMA 54 (87)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHH
Confidence 57788899999999996
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=10.81 E-value=1.4e+02 Score=23.70 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008123 67 YTLELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (577)
Q Consensus 67 ~~~eLl~Eia~lE~eV~~LE~~v~~l~~~L~ 97 (577)
+..||.+.+.+++.++..|.+++..|+..+-
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~ 32 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATIS 32 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999776665
Done!