Query 008124
Match_columns 577
No_of_seqs 259 out of 1517
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 19:46:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008124.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008124hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11031 guanosine pentaphosph 100.0 1E-103 2E-108 862.6 58.8 490 10-555 3-494 (496)
2 PRK10854 exopolyphosphatase; P 100.0 1E-102 2E-107 858.7 58.6 493 12-557 10-506 (513)
3 COG0248 GppA Exopolyphosphatas 100.0 8.4E-94 1.8E-98 770.8 42.5 447 12-497 2-451 (492)
4 TIGR03706 exo_poly_only exopol 100.0 8.1E-63 1.8E-67 508.9 34.2 296 14-329 1-299 (300)
5 PF02541 Ppx-GppA: Ppx/GppA ph 100.0 3.8E-56 8.2E-61 456.8 27.9 282 28-331 1-284 (285)
6 PRK15080 ethanolamine utilizat 99.7 2.7E-15 5.9E-20 152.6 20.2 157 3-183 14-175 (267)
7 PF01150 GDA1_CD39: GDA1/CD39 98.9 2E-08 4.2E-13 109.5 12.9 149 13-162 8-183 (434)
8 TIGR02529 EutJ ethanolamine ut 98.7 1E-06 2.2E-11 88.3 19.3 146 18-184 2-149 (239)
9 PRK09472 ftsA cell division pr 98.4 1.2E-05 2.6E-10 87.3 18.3 41 143-183 204-244 (420)
10 KOG1386 Nucleoside phosphatase 98.4 2E-06 4.3E-11 91.5 11.2 147 13-162 9-181 (501)
11 PF01966 HD: HD domain; Inter 98.2 1.9E-07 4.1E-12 82.1 -0.2 106 361-490 3-121 (122)
12 KOG1385 Nucleoside phosphatase 98.2 2.4E-06 5.1E-11 89.1 7.5 147 13-162 67-232 (453)
13 TIGR01175 pilM type IV pilus a 98.1 0.0012 2.6E-08 69.8 25.4 163 12-182 2-227 (348)
14 TIGR01174 ftsA cell division p 98.1 0.00015 3.3E-09 77.4 18.5 40 143-182 196-235 (371)
15 COG0849 ftsA Cell division ATP 98.1 0.00019 4.1E-09 77.1 18.1 41 144-184 204-244 (418)
16 smart00471 HDc Metal dependent 97.7 8.1E-05 1.7E-09 64.7 7.1 101 361-493 7-117 (124)
17 cd00077 HDc Metal dependent ph 97.7 7.1E-05 1.5E-09 66.5 6.9 112 361-493 5-127 (145)
18 TIGR00295 conserved hypothetic 97.5 0.00047 1E-08 65.1 9.0 121 349-490 3-125 (164)
19 PRK10719 eutA reactivating fac 97.5 0.0012 2.7E-08 71.1 13.1 153 14-181 7-184 (475)
20 PF06723 MreB_Mbl: MreB/Mbl pr 97.5 0.0025 5.3E-08 66.7 15.1 117 56-181 64-183 (326)
21 PF11104 PilM_2: Type IV pilus 97.2 0.006 1.3E-07 64.4 14.0 40 144-183 181-220 (340)
22 PF06277 EutA: Ethanolamine ut 97.2 0.0072 1.6E-07 65.3 14.5 152 15-175 5-175 (473)
23 TIGR03401 cyanamide_fam HD dom 97.2 0.0045 9.8E-08 61.5 12.0 118 343-490 40-165 (228)
24 PRK13928 rod shape-determining 97.1 0.01 2.3E-07 62.5 15.0 118 56-182 66-186 (336)
25 PRK13929 rod-share determining 96.9 0.026 5.7E-07 59.5 15.1 118 56-182 67-189 (335)
26 PRK13930 rod shape-determining 96.7 0.042 9E-07 57.7 15.6 88 91-182 103-191 (335)
27 COG4972 PilM Tfp pilus assembl 96.7 0.049 1.1E-06 56.0 14.8 72 112-183 159-233 (354)
28 TIGR00241 CoA_E_activ CoA-subs 96.7 0.014 3.1E-07 58.7 10.9 129 15-183 2-134 (248)
29 PRK12703 tRNA 2'-O-methylase; 96.6 0.0091 2E-07 62.4 9.2 122 345-492 173-296 (339)
30 TIGR00904 mreB cell shape dete 96.5 0.055 1.2E-06 56.9 14.4 75 104-182 114-189 (333)
31 PRK13927 rod shape-determining 96.4 0.074 1.6E-06 55.9 14.6 89 91-183 99-188 (334)
32 TIGR00277 HDIG uncharacterized 96.3 0.011 2.3E-07 47.8 6.2 67 361-453 7-78 (80)
33 TIGR03319 YmdA_YtgF conserved 96.3 0.016 3.5E-07 64.4 9.4 93 361-495 332-427 (514)
34 COG4820 EutJ Ethanolamine util 96.3 0.014 3E-07 55.8 7.6 144 11-179 27-176 (277)
35 PRK12705 hypothetical protein; 96.2 0.025 5.4E-07 62.4 9.9 93 361-495 326-421 (508)
36 PRK12704 phosphodiesterase; Pr 96.1 0.027 5.8E-07 62.8 10.0 93 361-495 338-433 (520)
37 PRK07152 nadD putative nicotin 96.0 0.015 3.2E-07 61.5 7.1 93 361-493 199-311 (342)
38 PRK00106 hypothetical protein; 95.9 0.055 1.2E-06 60.1 11.2 93 361-495 353-448 (535)
39 COG3294 HD supefamily hydrolas 95.9 0.01 2.2E-07 57.6 4.7 70 357-429 56-127 (269)
40 TIGR01596 cas3_HD CRISPR-assoc 95.5 0.025 5.5E-07 53.4 5.7 85 361-458 3-106 (177)
41 TIGR00488 putative HD superfam 95.4 0.056 1.2E-06 50.5 7.8 93 361-493 11-125 (158)
42 smart00268 ACTIN Actin. ACTIN 95.4 0.16 3.4E-06 54.2 12.2 93 82-183 89-185 (373)
43 COG1077 MreB Actin-like ATPase 95.4 0.12 2.6E-06 53.3 10.3 73 104-180 118-190 (342)
44 PRK10119 putative hydrolase; P 95.3 0.12 2.6E-06 51.4 9.9 97 359-474 26-130 (231)
45 PRK00227 glnD PII uridylyl-tra 95.2 0.023 5.1E-07 65.1 5.1 54 399-453 402-455 (693)
46 COG4819 EutA Ethanolamine util 95.1 0.32 7E-06 50.1 12.3 154 15-175 7-177 (473)
47 cd00012 ACTIN Actin; An ubiqui 95.0 0.21 4.5E-06 53.3 11.7 91 84-183 91-185 (371)
48 PRK03381 PII uridylyl-transfer 94.9 0.028 6E-07 65.9 4.9 53 400-453 443-495 (774)
49 PF08841 DDR: Diol dehydratase 94.9 0.081 1.8E-06 53.3 7.4 86 91-180 83-170 (332)
50 PTZ00280 Actin-related protein 94.8 0.48 1E-05 51.4 14.0 91 92-182 107-201 (414)
51 COG1078 HD superfamily phospho 94.6 0.053 1.1E-06 58.8 5.8 65 361-441 54-118 (421)
52 PTZ00004 actin-2; Provisional 94.2 1.1 2.4E-05 47.9 14.8 154 15-182 8-190 (378)
53 PRK05007 PII uridylyl-transfer 94.0 0.067 1.4E-06 63.6 5.5 55 399-454 498-552 (884)
54 COG3437 Response regulator con 94.0 0.13 2.7E-06 53.8 6.7 108 361-489 188-307 (360)
55 PF00370 FGGY_N: FGGY family o 93.9 0.27 6E-06 49.1 9.0 80 14-99 1-80 (245)
56 TIGR02692 tRNA_CCA_actino tRNA 93.9 0.071 1.5E-06 58.9 4.9 55 400-454 280-344 (466)
57 PRK04374 PII uridylyl-transfer 93.6 0.079 1.7E-06 62.7 5.1 53 400-453 487-539 (869)
58 PRK00275 glnD PII uridylyl-tra 93.6 0.071 1.5E-06 63.4 4.7 52 400-452 498-549 (895)
59 PRK01759 glnD PII uridylyl-tra 93.5 0.092 2E-06 62.2 5.4 56 398-454 472-527 (854)
60 PRK03059 PII uridylyl-transfer 93.4 0.11 2.3E-06 61.7 5.6 54 399-453 477-530 (856)
61 PRK05092 PII uridylyl-transfer 93.1 0.13 2.8E-06 61.7 5.8 54 399-453 530-583 (931)
62 PTZ00466 actin-like protein; P 93.0 2 4.3E-05 46.1 14.2 155 14-182 13-195 (380)
63 PTZ00009 heat shock 70 kDa pro 92.8 3.5 7.6E-05 47.6 16.8 55 105-161 157-212 (653)
64 TIGR03192 benz_CoA_bzdQ benzoy 92.5 1.9 4.2E-05 44.4 12.5 115 14-166 33-149 (293)
65 smart00842 FtsA Cell division 92.5 0.58 1.2E-05 44.9 8.4 59 15-79 1-59 (187)
66 TIGR01693 UTase_glnD [Protein- 92.5 0.17 3.6E-06 60.2 5.6 55 398-453 464-518 (850)
67 PRK13917 plasmid segregation p 92.5 0.29 6.3E-06 51.8 6.8 40 142-181 184-225 (344)
68 COG5371 Golgi nucleoside dipho 92.4 0.19 4.1E-06 53.8 5.1 143 13-161 120-285 (549)
69 PTZ00452 actin; Provisional 92.1 2.5 5.4E-05 45.3 13.5 93 82-182 94-189 (375)
70 PRK10885 cca multifunctional t 91.7 0.28 6E-06 53.2 5.6 53 401-453 247-306 (409)
71 COG1418 Predicted HD superfami 91.0 0.27 5.8E-06 48.7 4.3 54 360-431 38-94 (222)
72 TIGR02261 benz_CoA_red_D benzo 90.4 1.8 3.8E-05 44.0 9.6 118 14-166 2-121 (262)
73 TIGR03739 PRTRC_D PRTRC system 90.2 0.56 1.2E-05 49.1 6.1 66 117-182 141-208 (320)
74 PTZ00281 actin; Provisional 90.1 1.2 2.7E-05 47.6 8.8 93 82-182 95-190 (376)
75 PF00022 Actin: Actin; InterP 90.1 5.7 0.00012 42.5 14.0 92 82-182 88-183 (393)
76 TIGR01991 HscA Fe-S protein as 90.0 4.2 9.1E-05 46.4 13.5 116 59-182 103-225 (599)
77 COG2206 c-di-GMP phosphodieste 89.9 0.62 1.3E-05 49.4 6.1 108 361-495 151-276 (344)
78 TIGR03276 Phn-HD phosphonate d 89.8 1.5 3.2E-05 41.9 7.9 68 402-475 46-124 (179)
79 PF14574 DUF4445: Domain of un 88.8 3.6 7.7E-05 44.6 11.0 158 15-176 3-196 (412)
80 TIGR03286 methan_mark_15 putat 88.4 2 4.3E-05 46.1 8.6 120 13-166 144-264 (404)
81 COG1940 NagC Transcriptional r 88.3 12 0.00026 38.7 14.5 141 13-171 6-160 (314)
82 CHL00094 dnaK heat shock prote 88.0 5.7 0.00012 45.6 12.8 70 107-180 154-229 (621)
83 TIGR02621 cas3_GSU0051 CRISPR- 87.7 3.1 6.7E-05 49.0 10.2 82 361-458 678-789 (844)
84 PRK11678 putative chaperone; P 87.5 6.9 0.00015 43.1 12.4 86 70-161 132-227 (450)
85 PRK13321 pantothenate kinase; 87.4 14 0.00031 37.2 13.9 130 15-166 2-147 (256)
86 PTZ00186 heat shock 70 kDa pre 87.2 7.3 0.00016 45.0 13.0 98 60-165 135-236 (657)
87 PRK00290 dnaK molecular chaper 86.4 4.7 0.0001 46.3 10.9 105 69-180 115-227 (627)
88 PRK05183 hscA chaperone protei 86.3 10 0.00022 43.5 13.6 106 68-180 130-243 (616)
89 PF14450 FtsA: Cell division p 86.3 0.85 1.8E-05 40.5 3.8 27 15-41 1-27 (120)
90 COG2844 GlnD UTP:GlnB (protein 86.0 0.62 1.3E-05 53.6 3.3 54 398-452 482-535 (867)
91 PRK13298 tRNA CCA-pyrophosphor 86.0 0.7 1.5E-05 50.0 3.6 55 400-454 247-310 (417)
92 PF00480 ROK: ROK family; Int 85.7 13 0.00028 34.8 12.0 129 17-168 1-142 (179)
93 PRK13318 pantothenate kinase; 85.3 13 0.00027 37.7 12.3 128 15-166 2-147 (258)
94 PTZ00400 DnaK-type molecular c 84.9 7.4 0.00016 45.1 11.5 105 69-180 156-268 (663)
95 PRK10939 autoinducer-2 (AI-2) 84.6 3.3 7E-05 46.4 8.3 79 13-98 3-84 (520)
96 PF00012 HSP70: Hsp70 protein; 84.6 6.8 0.00015 44.5 11.1 74 106-182 153-232 (602)
97 TIGR02350 prok_dnaK chaperone 84.5 6.5 0.00014 44.8 10.8 87 69-161 112-201 (595)
98 PRK13410 molecular chaperone D 84.3 11 0.00024 43.6 12.6 95 59-161 109-205 (668)
99 KOG2517 Ribulose kinase and re 83.2 4.8 0.0001 44.5 8.6 85 12-99 5-90 (516)
100 PRK01286 deoxyguanosinetriphos 83.1 3.8 8.1E-05 43.2 7.4 35 361-413 65-99 (336)
101 PRK13411 molecular chaperone D 82.9 9.7 0.00021 44.0 11.4 94 60-161 108-204 (653)
102 PLN03184 chloroplast Hsp70; Pr 82.1 13 0.00028 43.1 12.0 70 107-180 191-266 (673)
103 PF14450 FtsA: Cell division p 81.3 3.1 6.6E-05 36.9 5.2 33 145-177 1-33 (120)
104 PRK13480 3'-5' exoribonuclease 80.8 1.5 3.3E-05 45.7 3.5 76 361-454 162-253 (314)
105 smart00732 YqgFc Likely ribonu 80.7 6.5 0.00014 32.9 6.9 84 15-122 3-91 (99)
106 PRK01433 hscA chaperone protei 80.5 9 0.0002 43.7 9.9 88 68-161 122-211 (595)
107 TIGR00555 panK_eukar pantothen 80.2 64 0.0014 33.2 15.0 132 16-181 3-138 (279)
108 TIGR01353 dGTP_triPase deoxygu 80.2 2.1 4.6E-05 46.0 4.4 85 361-453 41-146 (381)
109 COG0443 DnaK Molecular chapero 79.1 13 0.00027 42.4 10.4 96 59-161 94-190 (579)
110 TIGR02628 fuculo_kin_coli L-fu 79.1 8.4 0.00018 42.5 8.9 77 14-99 2-81 (465)
111 PF01869 BcrAD_BadFG: BadF/Bad 78.7 27 0.00059 35.2 12.0 127 17-168 2-131 (271)
112 TIGR00744 ROK_glcA_fam ROK fam 78.7 52 0.0011 34.0 14.3 130 17-167 2-147 (318)
113 PRK00047 glpK glycerol kinase; 78.3 6.3 0.00014 43.8 7.7 77 13-98 5-84 (498)
114 COG0554 GlpK Glycerol kinase [ 76.4 6.6 0.00014 42.9 6.7 103 12-120 4-135 (499)
115 PF06406 StbA: StbA protein; 76.3 5.3 0.00012 41.8 6.0 62 118-183 143-207 (318)
116 COG1924 Activator of 2-hydroxy 76.2 18 0.00039 38.5 9.6 137 10-183 132-272 (396)
117 PRK09698 D-allose kinase; Prov 74.8 88 0.0019 32.0 14.7 136 13-168 4-154 (302)
118 PRK04123 ribulokinase; Provisi 73.9 15 0.00033 41.4 9.3 81 13-99 3-90 (548)
119 TIGR01234 L-ribulokinase L-rib 73.8 11 0.00024 42.3 8.2 79 14-98 2-92 (536)
120 TIGR01311 glycerol_kin glycero 73.0 9.9 0.00021 42.2 7.5 75 14-97 2-79 (493)
121 PRK05318 deoxyguanosinetriphos 72.9 4.4 9.5E-05 44.3 4.5 82 361-452 61-163 (432)
122 COG1070 XylB Sugar (pentulose 72.1 15 0.00033 40.9 8.7 78 12-97 3-83 (502)
123 PTZ00294 glycerol kinase-like 72.0 17 0.00036 40.6 9.0 77 14-99 3-84 (504)
124 PRK01096 deoxyguanosinetriphos 71.7 4.3 9.3E-05 44.4 4.1 49 361-413 64-113 (440)
125 COG1713 Predicted HD superfami 69.9 7.2 0.00016 37.4 4.6 71 361-455 20-112 (187)
126 TIGR03760 ICE_TraI_Pfluor inte 69.4 5.5 0.00012 39.4 3.9 19 397-415 103-121 (218)
127 PRK10331 L-fuculokinase; Provi 69.1 28 0.0006 38.4 9.9 78 13-99 2-82 (470)
128 KOG2681 Metal-dependent phosph 69.0 6.3 0.00014 42.3 4.4 70 361-444 76-149 (498)
129 COG2971 Predicted N-acetylgluc 68.7 44 0.00096 34.5 10.3 136 12-174 4-149 (301)
130 TIGR01315 5C_CHO_kinase FGGY-f 67.8 25 0.00054 39.6 9.3 75 15-96 2-77 (541)
131 KOG0100 Molecular chaperones G 67.5 52 0.0011 35.3 10.6 96 56-165 143-249 (663)
132 PRK04926 dgt deoxyguanosinetri 66.7 7.6 0.00016 43.1 4.7 50 361-413 68-121 (503)
133 PLN02295 glycerol kinase 66.5 20 0.00044 40.0 8.2 76 15-99 2-84 (512)
134 PF01968 Hydantoinase_A: Hydan 66.4 7.4 0.00016 40.2 4.3 32 142-173 76-107 (290)
135 PRK03007 deoxyguanosinetriphos 64.1 7.4 0.00016 42.4 4.0 73 361-452 73-169 (428)
136 COG4341 Predicted HD phosphohy 63.5 3.5 7.6E-05 38.4 1.1 19 401-419 50-68 (186)
137 PF11215 DUF3010: Protein of u 61.9 1.3E+02 0.0028 27.5 11.5 99 14-125 2-104 (138)
138 PRK13317 pantothenate kinase; 61.1 2E+02 0.0043 29.5 15.4 63 114-180 67-132 (277)
139 COG1069 AraB Ribulose kinase [ 60.6 30 0.00064 38.5 7.7 75 13-93 3-78 (544)
140 TIGR01312 XylB D-xylulose kina 60.1 22 0.00048 39.1 7.0 72 17-97 2-76 (481)
141 PRK13311 N-acetyl-D-glucosamin 59.4 1.2E+02 0.0027 30.2 11.7 132 15-166 2-145 (256)
142 PRK13324 pantothenate kinase; 58.8 2E+02 0.0044 29.1 13.0 132 15-168 2-149 (258)
143 TIGR01314 gntK_FGGY gluconate 55.0 43 0.00094 37.3 8.2 73 15-97 2-77 (505)
144 PRK15027 xylulokinase; Provisi 54.9 46 0.00099 36.9 8.4 76 15-99 2-78 (484)
145 PRK13310 N-acetyl-D-glucosamin 52.5 1.7E+02 0.0037 29.9 11.7 132 15-168 2-147 (303)
146 cd08190 HOT Hydroxyacid-oxoaci 52.5 22 0.00048 38.6 5.2 78 71-155 10-92 (414)
147 PRK09557 fructokinase; Reviewe 52.4 1.5E+02 0.0032 30.4 11.2 132 15-168 2-147 (301)
148 TIGR01175 pilM type IV pilus a 49.5 86 0.0019 32.8 9.1 34 87-125 284-317 (348)
149 PRK09860 putative alcohol dehy 49.5 73 0.0016 34.2 8.6 78 71-155 18-100 (383)
150 PRK13331 pantothenate kinase; 48.1 1.4E+02 0.0031 30.1 9.9 25 1-31 1-25 (251)
151 cd08191 HHD 6-hydroxyhexanoate 46.8 39 0.00085 36.3 6.0 79 71-155 10-91 (386)
152 cd08188 Fe-ADH4 Iron-containin 45.7 60 0.0013 34.7 7.2 80 71-155 15-97 (377)
153 TIGR03706 exo_poly_only exopol 44.7 1.4E+02 0.003 30.8 9.5 57 15-74 127-184 (300)
154 PRK00976 hypothetical protein; 43.7 4.1E+02 0.009 28.0 12.7 61 104-169 94-174 (326)
155 PF01890 CbiG_C: Cobalamin syn 43.7 97 0.0021 27.5 7.1 53 75-130 21-73 (121)
156 TIGR02638 lactal_redase lactal 42.5 93 0.002 33.3 8.1 78 71-155 16-98 (379)
157 PRK00109 Holliday junction res 42.2 1.9E+02 0.0042 26.2 8.9 94 14-131 5-108 (138)
158 cd08192 Fe-ADH7 Iron-containin 42.0 37 0.0008 36.2 4.9 80 71-155 11-93 (370)
159 PRK15454 ethanol dehydrogenase 41.8 90 0.002 33.7 7.9 80 71-155 36-118 (395)
160 PRK10624 L-1,2-propanediol oxi 41.5 95 0.0021 33.3 7.9 77 72-155 18-99 (382)
161 PRK07027 cobalamin biosynthesi 41.4 1.1E+02 0.0023 27.5 7.0 60 60-128 14-73 (126)
162 COG0232 Dgt dGTP triphosphohyd 41.2 31 0.00067 37.3 4.0 41 361-414 71-111 (412)
163 PF00633 HHH: Helix-hairpin-he 40.9 16 0.00035 24.1 1.2 26 268-295 3-28 (30)
164 TIGR03123 one_C_unchar_1 proba 40.9 29 0.00064 36.3 3.8 139 17-174 2-159 (318)
165 PRK10854 exopolyphosphatase; P 40.0 1.3E+02 0.0029 33.6 9.1 57 14-73 138-195 (513)
166 COG3894 Uncharacterized metal- 39.5 41 0.00088 37.1 4.6 161 11-176 161-360 (614)
167 cd08551 Fe-ADH iron-containing 39.0 1.4E+02 0.0029 31.8 8.7 78 71-155 10-92 (370)
168 PLN02669 xylulokinase 38.3 1.2E+02 0.0025 34.5 8.3 25 12-38 7-31 (556)
169 COG1548 Predicted transcriptio 37.3 4.7E+02 0.01 26.7 11.3 128 14-163 4-150 (330)
170 TIGR02627 rhamnulo_kin rhamnul 37.0 56 0.0012 35.8 5.5 17 17-33 2-18 (454)
171 PF07318 DUF1464: Protein of u 36.0 2.6E+02 0.0056 29.6 9.7 66 103-169 90-180 (343)
172 cd08189 Fe-ADH5 Iron-containin 35.7 1.6E+02 0.0035 31.4 8.6 80 71-155 13-95 (374)
173 COG0816 Predicted endonuclease 35.6 2.2E+02 0.0049 26.1 8.2 87 14-123 3-96 (141)
174 cd08176 LPO Lactadehyde:propan 34.5 59 0.0013 34.8 5.0 77 72-155 16-97 (377)
175 TIGR02578 cas_TM1811_Csm1 CRIS 34.4 18 0.00038 41.8 1.0 28 403-430 2-37 (648)
176 COG1454 EutG Alcohol dehydroge 33.6 1.6E+02 0.0034 31.7 7.9 78 71-155 16-98 (377)
177 cd07766 DHQ_Fe-ADH Dehydroquin 33.3 51 0.0011 34.4 4.2 78 72-155 11-90 (332)
178 TIGR02259 benz_CoA_red_A benzo 30.7 85 0.0018 34.0 5.2 19 13-31 2-20 (432)
179 PRK12408 glucokinase; Provisio 30.3 1.9E+02 0.0041 30.4 7.9 106 4-130 5-125 (336)
180 cd08194 Fe-ADH6 Iron-containin 29.9 74 0.0016 34.0 4.8 80 71-155 10-92 (375)
181 COG0248 GppA Exopolyphosphatas 28.9 2.1E+02 0.0045 32.0 8.1 79 12-97 128-211 (492)
182 COG3481 Predicted HD-superfami 28.5 61 0.0013 33.4 3.6 26 397-422 163-188 (287)
183 PF03610 EIIA-man: PTS system 28.4 95 0.0021 27.0 4.5 51 105-155 13-71 (116)
184 PRK13321 pantothenate kinase; 28.2 96 0.0021 31.2 5.1 29 145-173 2-30 (256)
185 cd08169 DHQ-like Dehydroquinat 28.0 2E+02 0.0044 30.4 7.6 80 73-156 12-96 (344)
186 PRK11031 guanosine pentaphosph 27.8 2.3E+02 0.0049 31.6 8.3 57 14-73 133-190 (496)
187 PF00233 PDEase_I: 3'5'-cyclic 26.7 99 0.0021 30.8 4.8 42 361-413 5-46 (237)
188 COG4680 Uncharacterized protei 26.0 55 0.0012 27.6 2.3 17 15-31 56-72 (98)
189 PF11762 Arabinose_Iso_C: L-ar 25.1 93 0.002 27.4 3.6 19 14-33 32-50 (115)
190 COG0145 HyuA N-methylhydantoin 25.0 80 0.0017 36.6 4.2 31 144-174 279-309 (674)
191 cd08185 Fe-ADH1 Iron-containin 25.0 2.7E+02 0.0059 29.7 8.1 74 74-155 16-95 (380)
192 PF13941 MutL: MutL protein 24.8 1.5E+02 0.0033 32.7 6.1 35 15-50 2-36 (457)
193 PRK13318 pantothenate kinase; 24.6 1.3E+02 0.0028 30.2 5.3 29 145-173 2-30 (258)
194 cd08550 GlyDH-like Glycerol_de 24.5 1.5E+02 0.0032 31.3 5.9 77 72-155 11-89 (349)
195 cd08186 Fe-ADH8 Iron-containin 24.4 2.9E+02 0.0064 29.5 8.2 76 73-155 12-96 (383)
196 PRK00292 glk glucokinase; Prov 24.3 5.4E+02 0.012 26.5 10.0 122 12-153 1-138 (316)
197 cd08193 HVD 5-hydroxyvalerate 23.6 3.3E+02 0.0072 28.9 8.5 80 71-155 13-95 (376)
198 cd08549 G1PDH_related Glycerol 23.5 1.6E+02 0.0034 30.9 5.8 74 77-155 16-92 (332)
199 cd08181 PPD-like 1,3-propanedi 23.4 1.2E+02 0.0027 32.0 5.1 76 74-155 16-95 (357)
200 cd08182 HEPD Hydroxyethylphosp 23.2 1.9E+02 0.0042 30.7 6.5 57 396-456 230-289 (367)
201 PF07288 DUF1447: Protein of u 22.8 81 0.0018 25.2 2.5 35 99-133 25-59 (69)
202 cd08175 G1PDH Glycerol-1-phosp 22.1 1.2E+02 0.0027 31.8 4.7 78 72-155 11-92 (348)
203 PF07514 TraI_2: Putative heli 22.1 86 0.0019 33.0 3.4 19 395-413 100-118 (327)
204 KOG0679 Actin-related protein 21.8 89 0.0019 33.4 3.4 78 82-167 100-178 (426)
205 KOG1573 Aldehyde reductase [Ge 21.7 88 0.0019 29.3 2.9 23 400-422 116-138 (204)
206 PF11713 Peptidase_C80: Peptid 21.3 1.7E+02 0.0038 27.2 5.0 70 50-120 62-139 (157)
207 TIGR00250 RNAse_H_YqgF RNAse H 21.2 1.9E+02 0.0042 25.9 5.1 83 17-123 2-91 (130)
208 PF10298 WhiA_N: WhiA N-termin 21.1 3.3E+02 0.0072 22.3 6.2 65 474-568 4-68 (86)
209 PF08668 HDOD: HDOD domain; I 20.9 88 0.0019 29.7 3.0 46 361-423 97-142 (196)
210 TIGR02707 butyr_kinase butyrat 20.9 1E+03 0.022 25.2 14.6 26 142-168 173-198 (351)
211 PF03652 UPF0081: Uncharacteri 20.3 4.4E+02 0.0096 23.7 7.3 86 14-123 2-95 (135)
212 PF06116 RinB: Transcriptional 20.3 39 0.00083 25.3 0.3 24 547-570 20-43 (53)
213 PRK00002 aroB 3-dehydroquinate 20.3 4.2E+02 0.0092 28.0 8.3 71 78-156 25-105 (358)
No 1
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=100.00 E-value=9.7e-104 Score=862.57 Aligned_cols=490 Identities=28% Similarity=0.380 Sum_probs=441.3
Q ss_pred CCCceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccE
Q 008124 10 IPQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHT 89 (577)
Q Consensus 10 ~~~~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i 89 (577)
.+.+.+|||||||||+||+|+++.+ +.++++++.|++||||+|++.+|.|++++|+|+++||++|+++|++|+|+ +|
T Consensus 3 ~~~~~~A~IDIGSNSirL~I~~~~~-~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~~~~~~v~--~i 79 (496)
T PRK11031 3 SSSSLYAAIDLGSNSFHMLVVREVA-GSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAERLQDIPPS--QI 79 (496)
T ss_pred CCCCEEEEEEccccceeEEEEEecC-CceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--eE
Confidence 3467899999999999999999864 78999999999999999999999999999999999999999999999995 89
Q ss_pred EEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEE
Q 008124 90 RAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCE 169 (577)
Q Consensus 90 ~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~ 169 (577)
++|||+|+|+|+|+++|+++|+++||++|+||||+|||+|+|+||.+.++. .++++++||||||||+++++++++.+++
T Consensus 80 ~~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~-~~~~lviDIGGGStEl~~~~~~~~~~~~ 158 (496)
T PRK11031 80 RVVATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGG-ADQRLVVDIGGASTELVTGTGAQATSLF 158 (496)
T ss_pred EEEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCC-CCCEEEEEecCCeeeEEEecCCceeeee
Confidence 999999999999999999999999999999999999999999999999874 3458999999999999999999999999
Q ss_pred EEehhHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhhchhHHHHhcCCeEEEeecHHHHHHHHHHHcCCCcccccCCCC
Q 008124 170 SVNLGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGD 248 (577)
Q Consensus 170 SlplG~vrl~e~f~~~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~liG~gGt~~~la~~~~~~y~~~~~~~~~~ 248 (577)
|+|+|+||++++|+.++ +++.+...+.+|+++.+.+. .++++..++..+||+|||+++++++.... .
T Consensus 159 Sl~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~lig~gGt~~~la~~~~~~-~--------- 226 (496)
T PRK11031 159 SLSMGCVTWLERYFKDRNLTQENFDAAEKAAREVLRPV--ADELREHGWQVCVGASGTVQALQEIMMAQ-G--------- 226 (496)
T ss_pred EEeccchHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH--HHHHhhcCCCEEEEEChHHHHHHHHHHhc-C---------
Confidence 99999999999998865 57777888999999999743 44555556677999999999999875321 1
Q ss_pred CCCCccccccCHHHHHHHHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHH
Q 008124 249 FGGCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADS 328 (577)
Q Consensus 249 ~~~~~~~~~l~~~~l~~l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~glReGll~~~ 328 (577)
.+ ..++.++++++++++..++.+ ++++++||+++|+|+|+||++|+.++|+.+++++|+||++|||||+++++
T Consensus 227 ----~~-~~i~~~~l~~l~~~l~~~~~~--~~~~~~gl~~~Radii~~g~~Il~~i~~~~~~~~i~vs~~glREGl~~~~ 299 (496)
T PRK11031 227 ----MD-ERITLAKLQQLKQRAIQCGRL--EELEIEGLTLERALVFPSGLAILIAIFEELNIESMTLAGGALREGLVYGM 299 (496)
T ss_pred ----CC-CcCCHHHHHHHHHHHhcCCHH--HHhcCCCCCccHHHHHHHHHHHHHHHHHHcCcCEEEECCchHHHHHHHHH
Confidence 01 248999999999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCcchhHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHH
Q 008124 329 LAKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLL 408 (577)
Q Consensus 329 l~~~~~~~~~~~~~~~~s~~~l~~ry~~d~~~~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~L 408 (577)
+.+. ...|++..|+.+++.||++|. .|+.+|+++|++|||+|++.|++ ++++++||++||+|
T Consensus 300 ~~~~-----~~~d~~~~s~~~l~~ry~~d~--~ha~~v~~~a~~Lf~~l~~~~~l-----------~~~~~~LL~~Aa~L 361 (496)
T PRK11031 300 LHLP-----VEQDIRSRTLRNIQRRFQIDT--EQAQRVAKLADNFLQQVENEWHL-----------EPRSRELLISACQL 361 (496)
T ss_pred Hhhh-----cccchHHHHHHHHHHHcCcCH--HHHHHHHHHHHHHHHhhhhhcCC-----------ChHHHHHHHHHHHH
Confidence 8753 134778889999999999987 99999999999999999999975 45778999999999
Q ss_pred hhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhcCCChHHHHHHHHHHHHHHHHHHh
Q 008124 409 HNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVIL 488 (577)
Q Consensus 409 HdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhrk~~~~~~~~~~~~l~~~~~~~v~kL~~iLRlA~~L 488 (577)
||||++||+++||+||||||+|++ ++||||+|+.+||++++||+|+.|+..++.+..|+++ .+.+|++|||||++|
T Consensus 362 hdiG~~I~~~~~~~Hs~yiI~~s~-l~G~s~~E~~~iA~i~~~h~k~~~~~~~~~~~~l~~~---~v~~L~~iLRLA~~L 437 (496)
T PRK11031 362 HEIGLSVDFKQAPQHAAYLVRNLD-LPGFTPAQKKLLATLLLNQTNPVDLSSLHQQNALPPR---VAERLCRLLRLAIIF 437 (496)
T ss_pred HhcCCccCCCccchHHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCchhhhhhhhccCHH---HHHHHHHHHHHHHHh
Confidence 999999999999999999999998 9999999999999999999999887666677778766 499999999999999
Q ss_pred cc-ccCCCCcceEEEEeCCeeEEEEeecccCCCCCCCCCCCCcccHHHHHHHHHHHHHHHcCceEEEE
Q 008124 489 QQ-NDCVNLRGVDFFHSYEGFKLQVIKEARDQPYLPGSSQPTLDNIEAELEKELEHFKKIFKQELLVV 555 (577)
Q Consensus 489 d~-s~~~~i~~i~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~fg~~l~i~ 555 (577)
|+ ++.++++++++.++++.++| .+ +..|...+|+..++++++.++|+++ |.++.+.
T Consensus 438 d~~~~~~~i~~~~~~~~~~~l~l-~~---------~~~~~~~~~l~~~~l~~e~~~~~~~-~~~l~~~ 494 (496)
T PRK11031 438 ASRRRDDLLPEVTLQANDELLTL-TL---------PQGWLAQHPLGAEELEQESQWQSYV-HWPLEVE 494 (496)
T ss_pred ccccCCCCCCceEEEEeCCEEEE-EE---------ChhhhhhCcchHHHHHHHHHHHHhC-CceEEEe
Confidence 94 56789999999987777766 43 5568888888789999999999999 8888764
No 2
>PRK10854 exopolyphosphatase; Provisional
Probab=100.00 E-value=9.6e-103 Score=858.69 Aligned_cols=493 Identities=25% Similarity=0.386 Sum_probs=433.7
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEE
Q 008124 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (577)
Q Consensus 12 ~~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (577)
++.+|+|||||||+||+|+++. ++.++++++.|++||||+|++.+|.|++++|+|+++||++|+++|++|+|+ ++++
T Consensus 10 ~~~~A~IDIGSNSirL~I~e~~-~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~~~~~~v~--~v~~ 86 (513)
T PRK10854 10 PQEFAAVDLGSNSFHMVIARVV-DGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAERLQGFSPA--NVCI 86 (513)
T ss_pred CCEEEEEEeccchheEEEEEec-CCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--eEEE
Confidence 3579999999999999999986 578999999999999999999999999999999999999999999999995 8999
Q ss_pred EeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEE
Q 008124 92 VATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESV 171 (577)
Q Consensus 92 vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~Sl 171 (577)
|||+|+|+|+|+++|+++|+++||++|+||||+|||+|+|+||.+.++. .++++++||||||||+++++++++.+..|+
T Consensus 87 vATsAlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~-~~~~lvvDIGGGStEl~~~~~~~~~~~~S~ 165 (513)
T PRK10854 87 VGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPE-KGRKLVIDIGGGSTELVIGENFEPILVESR 165 (513)
T ss_pred EehHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCC-CCCeEEEEeCCCeEEEEEecCCCeeEeEEE
Confidence 9999999999999999999999999999999999999999999999874 356899999999999999999999999999
Q ss_pred ehhHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhhchhHHHHhcCCeEEEeecHHHHHHHHHHHcCCCcccccCCCCCC
Q 008124 172 NLGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGDFG 250 (577)
Q Consensus 172 plG~vrl~e~f~~~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~liG~gGt~~~la~~~~~~y~~~~~~~~~~~~ 250 (577)
|+|+||++++|+..+ +++.++..+.+++.+.+...+|. .+..++..+||+|||+++++++.... .
T Consensus 166 ~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~lig~gGT~r~la~i~~~~-~----------- 231 (513)
T PRK10854 166 RMGCVSFAQLYFPGGVISKENFQRARLAAAQKLETLAWQ--YRIQGWNVALGASGTIKAAHEVLVEM-G----------- 231 (513)
T ss_pred ecceeeHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHH--hhhcCCCEEEEechHHHHHHHHHHhC-C-----------
Confidence 999999999998765 57777888999999998754332 22334557999999999999976321 0
Q ss_pred CCccccccCHHHHHHHHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHHh
Q 008124 251 GCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSLA 330 (577)
Q Consensus 251 ~~~~~~~l~~~~l~~l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~glReGll~~~l~ 330 (577)
.+.+.++.++|+++++++.+++.+ ++.+++||+++|+|+|+||++|+.++|+.+++++|+||++|||||++++++.
T Consensus 232 --~~~~~i~~~~l~~l~~~l~~~~~~--~r~~~~gl~~~Rad~I~~g~~il~~i~~~~~~~~i~vs~~gLReGll~~~~~ 307 (513)
T PRK10854 232 --EKDGLITPERLEMLVKEVLKHKNF--AALSLPGLSEERKTVFVPGLAILCGVFDALAIRELRLSDGALREGVLYEMEG 307 (513)
T ss_pred --CCCCccCHHHHHHHHHHHHCCCHH--HHHhCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHh
Confidence 123479999999999999999987 9999999999999999999999999999999999999999999999999875
Q ss_pred cccCCCCCCcchhHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHhhccc-ccchhhhhhcccCcchHHHHHHHHHHh
Q 008124 331 KVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDK-LYNNQVKLIASFEDKDLEYLEAACLLH 409 (577)
Q Consensus 331 ~~~~~~~~~~~~~~~s~~~l~~ry~~d~~~~ha~~V~~~a~~LFd~l~~~~~-l~~~~~~~~~~~~~~~r~LL~~Aa~LH 409 (577)
+. ...|++.+|+++++.||++|. .|+.+|+++|++|||+|++.|+ + +++++++||++||+||
T Consensus 308 ~~-----~~~d~~~~s~~~la~ry~~d~--~ha~~V~~~a~~LFd~l~~~h~~~----------~~~~~~~LL~~Aa~Lh 370 (513)
T PRK10854 308 RF-----RHQDIRSRTAKSLANHYNIDR--EQARRVLETTMQLYEQWREQNPKL----------AHPQLEALLKWAAMLH 370 (513)
T ss_pred hc-----ccccHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHhhhhhhccc----------CCHHHHHHHHHHHHHH
Confidence 42 134888999999999999987 9999999999999999999984 2 2457889999999999
Q ss_pred hcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhcCCChHHHHHHHHHHHHHHHHHHhc
Q 008124 410 NIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQ 489 (577)
Q Consensus 410 dIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhrk~~~~~~~~~~~~l~~~~~~~v~kL~~iLRlA~~Ld 489 (577)
|||++||+++||+||||||+|++ |+||||+|+.+||+++|||||+.|+..++.|..|+ +..+.+|++|||||++||
T Consensus 371 diG~~I~~~~~~~Hs~yiI~~s~-l~G~s~~E~~~iA~i~ryh~k~~p~~~~~~~~~l~---~~~~~~l~~iLRLA~~Ld 446 (513)
T PRK10854 371 EVGLNINHSGLHRHSAYILQNTD-LPGFNQEQQLMLATLVRYHRKAIKLDDLPRFTLFK---KKQYLPLIQLLRLGVLLN 446 (513)
T ss_pred hcCCccCCCCcchhHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCChhhhhhhhccc---HHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998 99999999999999999999999987777788887 346678999999999999
Q ss_pred cccCCC--CcceEEEEeCCeeEEEEeecccCCCCCCCCCCCCcccHHHHHHHHHHHHHHHcCceEEEEee
Q 008124 490 QNDCVN--LRGVDFFHSYEGFKLQVIKEARDQPYLPGSSQPTLDNIEAELEKELEHFKKIFKQELLVVGS 557 (577)
Q Consensus 490 ~s~~~~--i~~i~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~fg~~l~i~~~ 557 (577)
+++.++ +.+++++.+++.+.| .+ +..|....++-.|.+++++++|+++||+++.++-.
T Consensus 447 ~~~~~~~~~~~v~~~~~~~~l~l-~l---------~~~~~~~~~le~~~~~~~~~~f~~vfg~~~~l~~~ 506 (513)
T PRK10854 447 NQRQATTTPPTLRLITDDSHWTL-RF---------PHDWFSQNALVLLDLEKEQEYWEDVTGWRLKIEEE 506 (513)
T ss_pred CCCCCCCCCCeEEEEEcCCEEEE-EE---------CccccccCcHHHHHHHHHHHHHHHHhCceEEEEec
Confidence 777543 456777665655566 33 33443333443599999999999999999999843
No 3
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.4e-94 Score=770.77 Aligned_cols=447 Identities=35% Similarity=0.517 Sum_probs=404.9
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEE
Q 008124 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (577)
Q Consensus 12 ~~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (577)
.+++|+||||||||||+|+++.+ |.+++++++|+.||||+|++.+|.|++++|+|+++||++|+++++.++++ ++++
T Consensus 2 ~~~~A~IDiGSNS~rlvV~~~~~-~~~~~l~~~k~~vrLgegl~~~g~L~~eai~R~~~aL~~f~e~~~~~~~~--~v~~ 78 (492)
T COG0248 2 ARRVAAIDLGSNSFRLVVAEITP-GSFQVLFREKRIVRLGEGLDATGNLSEEAIERALSALKRFAELLDGFGAE--EVRV 78 (492)
T ss_pred CceEEEEEecCCeEEEEEEeccC-CccchhhhhhhheehhcCccccCCcCHHHHHHHHHHHHHHHHHHhhCCCC--EEEE
Confidence 35799999999999999999986 88999999999999999999999999999999999999999999999985 7999
Q ss_pred EeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEE
Q 008124 92 VATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESV 171 (577)
Q Consensus 92 vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~Sl 171 (577)
|||+|+|+|+|+++|+.+++++||++|+||||+|||||+|+||.++++. ..+++++||||||||++++++.++....|+
T Consensus 79 vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~-~~~~lv~DIGGGStEl~~g~~~~~~~~~Sl 157 (492)
T COG0248 79 VATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPR-KGDGLVIDIGGGSTELVLGDNFEIGLLISL 157 (492)
T ss_pred ehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCC-CCCEEEEEecCCeEEEEEecCCccceeEEe
Confidence 9999999999999999999999999999999999999999999999985 566999999999999999999999999999
Q ss_pred ehhHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhhchhHHHHhcCCeEEEeecHHHHHHHHHHH--cCCCcccccCCCC
Q 008124 172 NLGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVV--SGYDRDFVDNVGD 248 (577)
Q Consensus 172 plG~vrl~e~f~~~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~liG~gGt~~~la~~~~--~~y~~~~~~~~~~ 248 (577)
|+||||++++|+.++ ++..+...+++|++..+++.++. +....+..+||+|||+|+++++++ ..||...+|
T Consensus 158 ~~G~v~lt~~~~~~~~~s~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~vg~sGT~r~la~l~~~~~~y~~~~~~---- 231 (492)
T COG0248 158 PLGCVRLTERFFPDDPISEENFAKARDAVREELEEIAKE--YRIAGWAGLVGTSGTIRALAKLHMAQGSYPLRVLH---- 231 (492)
T ss_pred ecceEEeehhhcCCCCCCHHHHHHHHHHHHHHHHhhhHH--HHhhhhccEEEccHHHHHHHHHHHhcccCChhhcc----
Confidence 999999999999874 68889999999999999875432 222345569999999999999864 457755444
Q ss_pred CCCCccccccCHHHHHHHHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHH
Q 008124 249 FGGCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADS 328 (577)
Q Consensus 249 ~~~~~~~~~l~~~~l~~l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~glReGll~~~ 328 (577)
+|.+|.+++.++++++.+++.+ ++.+++|++++|+|+|++|++|+.++|+.+++++|+||++|||||+++++
T Consensus 232 ------~~~it~~~l~~~~~~l~~~~~~--~~~~~~gl~~~Ra~vi~~G~~il~a~~~~l~~~~~~vs~~glREG~l~~~ 303 (492)
T COG0248 232 ------GYEITAEELEKLLERLIRMTSE--ERLKLEGLSKDRADVILAGAAILEAVFEALSIERMIVSDGGLREGVLYDL 303 (492)
T ss_pred ------CceEcHHHHHHHHHHHHhCChH--hHHhccCCChhhhHhhhhHHHHHHHHHHhcCcceEEeccccccchHHHHH
Confidence 6899999999999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCcchhHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHH
Q 008124 329 LAKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLL 408 (577)
Q Consensus 329 l~~~~~~~~~~~~~~~~s~~~l~~ry~~d~~~~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~L 408 (577)
+.+... .+++.+++.+++.+|.++. .|+.+|++.|.++|+++.+.++. ..++..+. |+|||+|
T Consensus 304 l~~~~~-----~~~r~~~~~~~~~~~~~~~--~~~~~v~~~a~~l~~~~~~~~~~---------~~~~~~~~-l~~Aa~L 366 (492)
T COG0248 304 LLRFEA-----EDIRKRSLLELALRYLIDL--AQAKRVAKLALELFDQLLALLKI---------DEEAEERL-LEAAAML 366 (492)
T ss_pred hhhhhh-----hhhhccHHHHHHHHhhhhH--HhHhhHHHHHHHHHHHhhhcccc---------CCChHHHH-HHHHHHH
Confidence 876532 2377789999999999977 89999999999999999987653 23555666 9999999
Q ss_pred hhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhcCCChHHHHHHHHHHHHHHHHHHh
Q 008124 409 HNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVIL 488 (577)
Q Consensus 409 HdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhrk~~~~~~~~~~~~l~~~~~~~v~kL~~iLRlA~~L 488 (577)
||||++|||++||+||+|+|.|++ ++||||+|+.++|++++||+++.++.....+ ++.+...+..|+++||+|..|
T Consensus 367 h~iG~~i~~~~~~~hsayiI~~s~-l~Gf~~~e~~~lA~l~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~llrla~~L 442 (492)
T COG0248 367 HEIGLNISHSGHHKHSAYIIRNSD-LPGFSHEERLLLALLARYHRKAVKLKKLAPF---SKKKLKSVRRLLGLLRLAVIL 442 (492)
T ss_pred HHhccccCcccHHHHHHHHHHcCC-CCCCCHHHHHHHHHHHHHHhcCCCccccccc---cchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 9999999999999999999998776544433 777888999999999999999
Q ss_pred ccccCCCCc
Q 008124 489 QQNDCVNLR 497 (577)
Q Consensus 489 d~s~~~~i~ 497 (577)
|+++...+.
T Consensus 443 ~~~~~~~~~ 451 (492)
T COG0248 443 DRARQGDIE 451 (492)
T ss_pred cccccCcCC
Confidence 999986664
No 4
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=100.00 E-value=8.1e-63 Score=508.94 Aligned_cols=296 Identities=33% Similarity=0.497 Sum_probs=270.0
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEe
Q 008124 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (577)
Q Consensus 14 ~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (577)
.+|+|||||||+||+|+++. ++.++++++.+.+||||++++.+|.|++++|++++++|++|+++++.|+++ ++++||
T Consensus 1 ~~AvIDiGSNsirl~I~~~~-~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~~~~~v~--~i~~va 77 (300)
T TIGR03706 1 PIAAIDIGSNSVRLVIARGV-EGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELLRGFPVD--EVRAVA 77 (300)
T ss_pred CeEEEEecCCeeeEEEEEec-CCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--eEEEEE
Confidence 37999999999999999986 577999999999999999999999999999999999999999999999995 899999
Q ss_pred ehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEeh
Q 008124 94 TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNL 173 (577)
Q Consensus 94 TsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~Slpl 173 (577)
|+|+|+|+|+++|+++|+++||++|+||||+|||+|+|+|+.+.++.. +++++||||||||+++++++++.+++|+|+
T Consensus 78 Tsa~R~A~N~~~~~~~i~~~tgi~i~visg~eEa~l~~~gv~~~~~~~--~~~v~DiGGGSte~~~~~~~~~~~~~Sl~l 155 (300)
T TIGR03706 78 TAALRDAKNGPEFLREAEAILGLPIEVISGEEEARLIYLGVAHTLPIA--DGLVVDIGGGSTELILGKDFEPGEGVSLPL 155 (300)
T ss_pred cHHHHcCCCHHHHHHHHHHHHCCCeEEeChHHHHHHHHHHHHhCCCCC--CcEEEEecCCeEEEEEecCCCEeEEEEEcc
Confidence 999999999999999999999999999999999999999999988643 369999999999999999999999999999
Q ss_pred hHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhhchhHHHHhcCCeEEEeecHHHHHHHHHHHc--CCCcccccCCCCCC
Q 008124 174 GHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVS--GYDRDFVDNVGDFG 250 (577)
Q Consensus 174 G~vrl~e~f~~~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~liG~gGt~~~la~~~~~--~y~~~~~~~~~~~~ 250 (577)
|++||+++|...+ |+.++++.+++|+.+.+... ++++..+...+||+|||+++++++... .|+.+
T Consensus 156 G~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~lig~gGt~~~la~~~~~~~~~~~~--------- 223 (300)
T TIGR03706 156 GCVRLTEQFFPDGPISKKSLKQARKAAREELASL---KWLKKGGWRPLYGVGGTWRALARIHQAQHGYPLH--------- 223 (300)
T ss_pred ceEEhHHhhCCCCCCCHHHHHHHHHHHHHHHHHh---HHHhhCCCCEEEEehHHHHHHHHHHHhcccCCCc---------
Confidence 9999999998754 67788999999999998753 344544555799999999999998643 35432
Q ss_pred CCccccccCHHHHHHHHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHH
Q 008124 251 GCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSL 329 (577)
Q Consensus 251 ~~~~~~~l~~~~l~~l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~glReGll~~~l 329 (577)
..|++.+++++|++++++|..++.+ ++.+++|++++|+|+|+||++|+.++|+.+++++++||++|||||++++++
T Consensus 224 -~~~~~~l~~~~~~~~~~~l~~~~~~--~r~~~~gl~~~Rad~i~~g~~i~~~l~~~~~~~~i~vs~~glreGl~~~~~ 299 (300)
T TIGR03706 224 -GLHGYTITAEGLLELLEELIKLSRE--ERLKLPGLSKDRADILPGGAAVLEELFRALGIEQMVFSRGGLREGVLYELL 299 (300)
T ss_pred -CccCCEECHHHHHHHHHHHHcCCHH--HHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEECCchHHHHHHHhhc
Confidence 3456789999999999999999988 999999999999999999999999999999999999999999999998864
No 5
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=100.00 E-value=3.8e-56 Score=456.79 Aligned_cols=282 Identities=35% Similarity=0.580 Sum_probs=247.2
Q ss_pred EEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHH
Q 008124 28 LIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFV 107 (577)
Q Consensus 28 ~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl 107 (577)
+|++++ ++.++++++.+++||||++++.+|.|++++|++++++|++|++++++|+|+ +++||||+|+|+|+|+++|+
T Consensus 1 ~I~~~~-~~~~~~l~~~~~~vrLg~~~~~~g~i~~e~i~r~~~~L~~f~~~~~~~~v~--~i~~vATsA~R~A~N~~~~~ 77 (285)
T PF02541_consen 1 VIAEVK-DGKFKILEEEKEIVRLGEGVFETGRISEEAIERAIDALKRFKEILKDYGVE--KIRAVATSALREAKNSDEFL 77 (285)
T ss_dssp EEEEEE-TTEEEEEEEEEEE--TTTTHHHHSSB-HHHHHHHHHHHHHHHHHHHHTTGS--EEEEEEEHHHHHSTTHHHHH
T ss_pred CEEEeC-CCCeEEeeeceEEEEcccccccCCCcCHHHHHHHHHHHHHHHHHHHHCCCC--EEEEEhhHHHHhCcCHHHHH
Confidence 689997 567999999999999999999999999999999999999999999999994 89999999999999999999
Q ss_pred HHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHHhhcCCC-
Q 008124 108 ECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCS- 186 (577)
Q Consensus 108 ~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~~~~- 186 (577)
++|+++||++|+||||+|||+|+|+||.+.+ .+.++++++||||||||+++++++++.++.|+|+|+|++++.|...+
T Consensus 78 ~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l-~~~~~~lviDIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~~~~~~~ 156 (285)
T PF02541_consen 78 DRIKKETGIDIEIISGEEEARLSFLGVLSSL-PPDKNGLVIDIGGGSTELILFENGKVVFSQSLPLGAVRLTERFFKSDP 156 (285)
T ss_dssp HHHHHHHSS-EEEE-HHHHHHHHHHHHHHHS-TTTSSEEEEEEESSEEEEEEEETTEEEEEEEES--HHHHHHHHSGCSS
T ss_pred HHHHHHhCCceEEecHHHHHHHHHHHHHhhc-cccCCEEEEEECCCceEEEEEECCeeeEeeeeehHHHHHHHHHhccCc
Confidence 9999999999999999999999999999998 34567999999999999999999999999999999999999998765
Q ss_pred CCHHHHHHHHHHHHHHHHhhchhHHHHhcC-CeEEEeecHHHHHHHHHHHcCCCcccccCCCCCCCCccccccCHHHHHH
Q 008124 187 GNFEEVLKMREYVRMVILEFGLVEKVKESG-FEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGDFGGCKRDWRLSRGELKG 265 (577)
Q Consensus 187 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~liG~gGt~~~la~~~~~~y~~~~~~~~~~~~~~~~~~~l~~~~l~~ 265 (577)
++..+.+.+++|+.+.+....+. +...+ ...++|++|+.++++.... .++ ..++.++.++|++
T Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~-~~~-------------~~~~~i~~~~l~~ 220 (285)
T PF02541_consen 157 PTAEELEKLREFIRKELEELKWE--FPKGGGTIRIIGTSGTIRALYPLKK-IHG-------------KEGYEITREDLEE 220 (285)
T ss_dssp -HHHHHHHHHHHHHHHHCTTHHH--HHHHCHHCEEECCCHHHHHHHHHHH-HTT-------------CSSCEEEHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH--hhhcCCceeeecHHHHHHHHHHHHH-hcC-------------CCCceECHHHHHH
Confidence 46677788999999999875332 22223 5678999999999887542 111 0147899999999
Q ss_pred HHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHHhc
Q 008124 266 IVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSLAK 331 (577)
Q Consensus 266 l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~glReGll~~~l~~ 331 (577)
+++++.+++.+ ++.+++||+++|+|+|+||++|+.++|+.+++++++||++|||||++++++.+
T Consensus 221 ~~~~l~~~~~e--e~~~~~gl~~~Ra~~i~~g~~i~~~l~~~~~~~~i~vs~~glreG~l~~~l~~ 284 (285)
T PF02541_consen 221 LLEKLSKMSPE--ERAKIPGLSPDRADIILPGALILKALLEAFGAEEIIVSDYGLREGLLYDMLLK 284 (285)
T ss_dssp HHHHHHTSSHH--HHHTSTTSHHCHHTTHHHHHHHHHHHHHHHTHSEEEEESEEHHHHHHHHHHHH
T ss_pred HHHHHHcCChH--HHHHccCCCHHHHHhHHHHHHHHHHHHHHcCCCEEEECCCchHHHHHHHHhcc
Confidence 99999999988 99999999999999999999999999999999999999999999999998864
No 6
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.68 E-value=2.7e-15 Score=152.57 Aligned_cols=157 Identities=22% Similarity=0.248 Sum_probs=124.2
Q ss_pred cccccccCCCceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHc
Q 008124 3 TNTSYMQIPQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSH 82 (577)
Q Consensus 3 ~~~~~~~~~~~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~ 82 (577)
++|+-.+...+++++|||||||+|++|++..+ +.+.+.+..++.+|+|. +.+ ++++.++|+.|.+.++.+
T Consensus 14 ~~~~~~~~~~~~~~~iDiGSssi~~vv~~~~~-~~~~~~~~~~~~vr~G~-i~d--------i~~a~~~i~~~~~~ae~~ 83 (267)
T PRK15080 14 INKTPVATESPLKVGVDLGTANIVLAVLDEDG-QPVAGALEWADVVRDGI-VVD--------FIGAVTIVRRLKATLEEK 83 (267)
T ss_pred hcCCCCCCCCCEEEEEEccCceEEEEEEcCCC-CEEEEEeccccccCCCE-Eee--------HHHHHHHHHHHHHHHHHH
Confidence 34554455677999999999999999997643 35778888888999988 333 999999999999999887
Q ss_pred -CCCcccEEEEeehhhhhcC---ChHHHHHHHHHHcCCcEE-EeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEE
Q 008124 83 -NISRDHTRAVATAAVRAAE---NKDEFVECVREKVGFEVD-VLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEF 157 (577)
Q Consensus 83 -~v~~~~i~~vATsA~R~A~---N~~~fl~~i~~~tGl~i~-VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl 157 (577)
|++ +..|+| +++.+. |+..+. ++.++.|+++. ++++ ..|--.++ ... ..+++|||||+|++
T Consensus 84 ~g~~---i~~v~~-~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e-~~A~a~~~------~~~--~~~vvDIGggtt~i 149 (267)
T PRK15080 84 LGRE---LTHAAT-AIPPGTSEGDPRAII-NVVESAGLEVTHVLDE-PTAAAAVL------GID--NGAVVDIGGGTTGI 149 (267)
T ss_pred hCCC---cCeEEE-EeCCCCCchhHHHHH-HHHHHcCCceEEEech-HHHHHHHh------CCC--CcEEEEeCCCcEEE
Confidence 773 566777 788877 888877 66677899999 5554 44433222 111 26999999999999
Q ss_pred EEeeCCeEEEEEEEehhHHHHHHhhc
Q 008124 158 VIGKRGKVVFCESVNLGHVSLSEKFG 183 (577)
Q Consensus 158 ~~~~~~~~~~~~SlplG~vrl~e~f~ 183 (577)
+++.+|++.+..++|+|.-.+++...
T Consensus 150 ~v~~~g~~~~~~~~~~GG~~it~~Ia 175 (267)
T PRK15080 150 SILKDGKVVYSADEPTGGTHMSLVLA 175 (267)
T ss_pred EEEECCeEEEEecccCchHHHHHHHH
Confidence 99999999999999999999998653
No 7
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=98.85 E-value=2e-08 Score=109.52 Aligned_cols=149 Identities=26% Similarity=0.324 Sum_probs=89.0
Q ss_pred ceEEEEEecccceEEEEEEEeC--CCCEEEEEeeee--e--eeeccCCCcCCCCCHHHHHHHHHHHHHHHH-HHHHcCCC
Q 008124 13 TLFASIDMGTSSFKLLIIRAYP--NGKFLTIDTLKQ--P--VILGRDLSSSCSISTQSQARSVESLLMFRD-IIQSHNIS 85 (577)
Q Consensus 13 ~~~AvIDIGSNSirL~I~~~~~--~~~~~~l~~~k~--~--vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~-~~~~~~v~ 85 (577)
....|||.||.+.|+-|++... .....++...+. + ....-|+..- .-+++.+...+.-|-.++. .+..-..+
T Consensus 8 ~y~vviDAGSsgsR~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~pgls~~-~~~~~~~~~~l~~ll~~a~~~ip~~~~~ 86 (434)
T PF01150_consen 8 KYGVVIDAGSSGSRVHVYKWRCRDNNSLPVVPLVEQSKPVFKKVEPGLSSF-ADNPEKAAESLQPLLDFAKSVIPKSQHS 86 (434)
T ss_dssp EEEEEEEEESSEEEEEEEEEEEEECCGCEEEEEEEEBEEHCCHHCCHHHHH-TTTTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cEEEEEEcCCCCceEEEEEEecCCCccCCccccceeccchhhcccchHHHh-CCChHHHHHHHHHHHHHHHhhCCHHHhC
Confidence 3468999999999999999864 122333222222 1 1111121110 1123455555555544433 22222222
Q ss_pred cccEEEEeehhhhh--cCChHHHHHHHHHH----cCCc-----EEEeChHHHHHHHHhhhhccCC---CC------CCce
Q 008124 86 RDHTRAVATAAVRA--AENKDEFVECVREK----VGFE-----VDVLTGEQEAKFVYMGVLQFLP---VF------DRLV 145 (577)
Q Consensus 86 ~~~i~~vATsA~R~--A~N~~~fl~~i~~~----tGl~-----i~VIsg~eEA~l~~~gv~~~~~---~~------~~~~ 145 (577)
...|.+.||+.||. ..+++.+++.+++. +++. ++||||+||+.|.|++|-.-+. .. ....
T Consensus 87 ~tpi~l~ATAGmRlL~~~~~~~il~~~~~~l~~~~~f~~~~~~v~visG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~t~ 166 (434)
T PF01150_consen 87 STPIYLGATAGMRLLPEEQQEAILDEVRNYLRSSSPFPFRDSWVRVISGEEEGIYGWVTVNYLLGRLDSSGASKSPSNTV 166 (434)
T ss_dssp HEEEEEEE-HHHHTHHHHHHHHHHHHHHHCHHCHCTSSEEETTCEE--HHHHHHHHHHHHHHHTTTSSSSTEEEEESS-E
T ss_pred CeeEEEecccccEECChhhHHHHHHHHHHhhccCCCCccCccceEecCHHHhhHhHHHHHHHHhCccccccccCCCCceE
Confidence 24588899999996 45778888888763 4543 7999999999999999865332 11 2446
Q ss_pred EEEEeCCCceEEEEeeC
Q 008124 146 LSVDIGGGSTEFVIGKR 162 (577)
Q Consensus 146 lviDIGGGStEl~~~~~ 162 (577)
-++|+|||||+|+..-+
T Consensus 167 g~lDlGGaStQIaf~~~ 183 (434)
T PF01150_consen 167 GALDLGGASTQIAFEPS 183 (434)
T ss_dssp EEEEE-SSEEEEEEEET
T ss_pred EEEecCCcceeeeeccC
Confidence 79999999999997655
No 8
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=98.72 E-value=1e-06 Score=88.27 Aligned_cols=146 Identities=21% Similarity=0.289 Sum_probs=90.3
Q ss_pred EEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCH-HHHHHHHHHHHHHHHHHHH-cCCCcccEEEEeeh
Q 008124 18 IDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSIST-QSQARSVESLLMFRDIIQS-HNISRDHTRAVATA 95 (577)
Q Consensus 18 IDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~-e~i~r~~~~L~~f~~~~~~-~~v~~~~i~~vATs 95 (577)
|||||+||++++.+.. ++.+-.. .+=.+-..+|.|.+ ++.. ..|+.+++.++. .|.+..+ .+++..
T Consensus 2 ~dig~~~ik~v~~~~~-~~~~~~~-------~~~~~~~~~g~I~d~~~~~---~~l~~l~~~a~~~~g~~~~~-vvisVP 69 (239)
T TIGR02529 2 VDLGTANIVIVVLDED-GQPVAGV-------MQFADVVRDGIVVDFLGAV---EIVRRLKDTLEQKLGIELTH-AATAIP 69 (239)
T ss_pred CCcccceEEEEEEecC-CCEEEEE-------ecccccccCCeEEEhHHHH---HHHHHHHHHHHHHhCCCcCc-EEEEEC
Confidence 7999999999998765 3422111 12222334455543 4444 445555544432 3443212 234433
Q ss_pred hhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEehhH
Q 008124 96 AVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGH 175 (577)
Q Consensus 96 A~R~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~ 175 (577)
+-=...+++.+.+.+ +..|+++..+.-+-=|-..+++ . . ..+++|||||+|.++++++|++.++.++|+|.
T Consensus 70 ~~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~~~~----~--~--~~~vvDiGggtt~i~i~~~G~i~~~~~~~~GG 140 (239)
T TIGR02529 70 PGTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAAVLQ----I--K--NGAVVDVGGGTTGISILKKGKVIYSADEPTGG 140 (239)
T ss_pred CCCCcccHHHHHHHH-HHcCCceEEEeehHHHHHHHhc----C--C--CcEEEEeCCCcEEEEEEECCeEEEEEeeecch
Confidence 332334455555554 4579998766555544333222 1 1 25999999999999999999999999999999
Q ss_pred HHHHHhhcC
Q 008124 176 VSLSEKFGT 184 (577)
Q Consensus 176 vrl~e~f~~ 184 (577)
-.+++.+..
T Consensus 141 ~~it~~Ia~ 149 (239)
T TIGR02529 141 THMSLVLAG 149 (239)
T ss_pred HHHHHHHHH
Confidence 999987643
No 9
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.40 E-value=1.2e-05 Score=87.34 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=37.3
Q ss_pred CceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHHhhc
Q 008124 143 RLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFG 183 (577)
Q Consensus 143 ~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~ 183 (577)
...+++|||||+|+++++++|.+.++.++|+|.-.+++.+.
T Consensus 204 ~gv~vvDiGggtTdisv~~~G~l~~~~~i~~GG~~it~dIa 244 (420)
T PRK09472 204 LGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIA 244 (420)
T ss_pred cCeEEEEeCCCceEEEEEECCEEEEEeeeechHHHHHHHHH
Confidence 35899999999999999999999999999999999887653
No 10
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=98.38 E-value=2e-06 Score=91.53 Aligned_cols=147 Identities=20% Similarity=0.295 Sum_probs=95.7
Q ss_pred ceEEEEEecccceEEEEEEEeC-CCC--EEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHH-H--HHcCCCc
Q 008124 13 TLFASIDMGTSSFKLLIIRAYP-NGK--FLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDI-I--QSHNISR 86 (577)
Q Consensus 13 ~~~AvIDIGSNSirL~I~~~~~-~~~--~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~-~--~~~~v~~ 86 (577)
+.=.|||-||...||-|+.... .|. +.++...-..-.++-|+.+-+. .|+.....+.-|-+|++- + +.++-
T Consensus 9 kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~-nP~~a~~~l~pLlefA~~~IPk~~h~~-- 85 (501)
T KOG1386|consen 9 KYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFAD-NPEGASVYLTPLLEFAKEHIPKEKHKE-- 85 (501)
T ss_pred eEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhcc-ChhhhHHHHHHHHHHHHhhCCHhhcCC--
Confidence 3347899999999999998754 333 2222221112234555443222 456666666666666553 1 22232
Q ss_pred ccEEEEeehhhhhc--CChHHHHHHHHHHc----CCc-----EEEeChHHHHHHHHhhhhccC---CC------CCCceE
Q 008124 87 DHTRAVATAAVRAA--ENKDEFVECVREKV----GFE-----VDVLTGEQEAKFVYMGVLQFL---PV------FDRLVL 146 (577)
Q Consensus 87 ~~i~~vATsA~R~A--~N~~~fl~~i~~~t----Gl~-----i~VIsg~eEA~l~~~gv~~~~---~~------~~~~~l 146 (577)
..+++.||+.||-- .+.+.+++-+..-+ ++. ++||||+||+.|+|.++-..+ .. ..+..-
T Consensus 86 Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~NY~LG~f~~~~~~~~~~~T~G 165 (501)
T KOG1386|consen 86 TPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAANYLLGRFGKKNRWDSRKETFG 165 (501)
T ss_pred CCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHHHHHHHHhccccCcccCCcceee
Confidence 35899999999975 56667766665433 333 789999999999999986432 11 234567
Q ss_pred EEEeCCCceEEEEeeC
Q 008124 147 SVDIGGGSTEFVIGKR 162 (577)
Q Consensus 147 viDIGGGStEl~~~~~ 162 (577)
++|+||.||+|+..-.
T Consensus 166 ~lDlGGAS~QItFe~~ 181 (501)
T KOG1386|consen 166 ALDLGGASTQITFEPP 181 (501)
T ss_pred eEecCCceeEEEEecC
Confidence 9999999999997654
No 11
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=98.25 E-value=1.9e-07 Score=82.13 Aligned_cols=106 Identities=23% Similarity=0.315 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCC-------------CchhhhHHH
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK-------------GYHKQSCHI 427 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~~-------------~h~~Hs~yi 427 (577)
+|+..|+.+|..+++.+.. +.++.++.+||+|||||+...+. .|...|+++
T Consensus 3 ~Hs~~V~~~a~~l~~~~~~----------------~~~~~~l~~aaLlHDiGk~~~~~~~~~~~~~~~~~~~H~~~g~~~ 66 (122)
T PF01966_consen 3 EHSLRVAELAERLADRLGL----------------EEDRELLRIAALLHDIGKIPTPDFIEKKPEERGKFYRHEEIGAEI 66 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTH----------------HHHHHHHHHHHHHTTTTHHSTHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCC----------------chhHHHHHHHHHHHhcCCCCCchHHHHhHhhhchhhhhHHHHHHH
Confidence 7999999999999887653 13568999999999999999774 688899999
Q ss_pred HHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhcCCChHHHHHHHHHHHHHHHHHHhcc
Q 008124 428 IMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQ 490 (577)
Q Consensus 428 I~ns~~l~G~s~~E~~~iA~i~~yhrk~~~~~~~~~~~~l~~~~~~~v~kL~~iLRlA~~Ld~ 490 (577)
+.+.....|+. ...++.++++|........... .........++.++++|+.||.
T Consensus 67 ~~~~~~~~~~~---~~~i~~~i~~H~~~~~~~~~~~-----~~~~~~~~~~~~iv~~aD~l~a 121 (122)
T PF01966_consen 67 LKEFLKELGLP---IEIIANAIRYHHGPWNGEGKPK-----EEDYEPISLEARIVKLADRLDA 121 (122)
T ss_dssp HHHHHHHHCHC---HHHHHHHHHHTTTHHTSHHCHH-----CHSCSTSSHHHHHHHHHHHHHH
T ss_pred HHHhhhhcchH---HHHHHHHHHHhccccccccccc-----ccCCCCCCHHHHHHHHHHHHhC
Confidence 98875223334 6789999999976554311111 1111234457889999999873
No 12
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=98.23 E-value=2.4e-06 Score=89.06 Aligned_cols=147 Identities=20% Similarity=0.209 Sum_probs=92.4
Q ss_pred ceEEEEEecccceEEEEEEEeCC--CC-EEEEEeeeeeeeeccCCCcCC-CCCHHHHHHHHHHHHHHHHHHHHcCCCccc
Q 008124 13 TLFASIDMGTSSFKLLIIRAYPN--GK-FLTIDTLKQPVILGRDLSSSC-SISTQSQARSVESLLMFRDIIQSHNISRDH 88 (577)
Q Consensus 13 ~~~AvIDIGSNSirL~I~~~~~~--~~-~~~l~~~k~~vrLg~~~~~~g-~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~ 88 (577)
+...+||-||...|+.||..+.. +. +++-++.-..+.-|-..+.+. +=..++++.+++.-+.|.-. +.+..+ .
T Consensus 67 ~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfaddp~~aA~Sl~~LLd~A~~~vP~-~~~~kT--P 143 (453)
T KOG1385|consen 67 QYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFADDPEEAANSLRPLLDVAEAFVPR-EHWKKT--P 143 (453)
T ss_pred EEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccCCChHHHHHhHHHHHHHHHhhCCH-hHhccC--c
Confidence 45689999999999999998743 22 222222222332232323221 11223333333333333211 222343 5
Q ss_pred EEEEeehhhhhc--CChHHHHHHHHHHcC---------CcEEEeChHHHHHHHHhhhhccC---CCC-CCceEEEEeCCC
Q 008124 89 TRAVATAAVRAA--ENKDEFVECVREKVG---------FEVDVLTGEQEAKFVYMGVLQFL---PVF-DRLVLSVDIGGG 153 (577)
Q Consensus 89 i~~vATsA~R~A--~N~~~fl~~i~~~tG---------l~i~VIsg~eEA~l~~~gv~~~~---~~~-~~~~lviDIGGG 153 (577)
|.+-||+.+|-- .-++.+++.|++.+- =.|.|++|.+|+-|.|..+-..+ .-+ .+..-++|+|||
T Consensus 144 i~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGGG 223 (453)
T KOG1385|consen 144 IVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDGTDEGVYAWITINYLLGTLGAPGHRTVGVVDLGGG 223 (453)
T ss_pred eEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccCcccceeeeeehhhhhcccCCCCCCceEEEEcCCc
Confidence 788999999974 456788988888763 23889999999999998875432 211 345789999999
Q ss_pred ceEEEEeeC
Q 008124 154 STEFVIGKR 162 (577)
Q Consensus 154 StEl~~~~~ 162 (577)
||++++.-.
T Consensus 224 STQi~f~p~ 232 (453)
T KOG1385|consen 224 STQITFLPT 232 (453)
T ss_pred eEEEEEecC
Confidence 999998653
No 13
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.11 E-value=0.0012 Score=69.77 Aligned_cols=163 Identities=20% Similarity=0.273 Sum_probs=92.7
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEE-
Q 008124 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTR- 90 (577)
Q Consensus 12 ~~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~- 90 (577)
++.+..|||||+++|++..+.. ++.++++.....++ -.+...+|.+.+ ++.+.++|+...+ ..++...++.
T Consensus 2 ~~~~vgiDIg~~~Ik~v~~~~~-~~~~~v~~~~~~~~--p~~~i~~g~i~d--~~~~~~~l~~~~~---~~~~~~k~v~~ 73 (348)
T TIGR01175 2 KSLLVGIDIGSTSVKVAQLKRS-GDRYKLEHYAVEPL--PAGIFTEGHIVE--YQAVAEALKELLS---ELGINTKKAAT 73 (348)
T ss_pred CCcEEEEEeccCeEEEEEEEec-CCceEEEEEEEEEC--CCCcccCCCccC--HHHHHHHHHHHHH---HcCCCcceEEE
Confidence 3467899999999999988754 45677776555553 334444554432 2334445544333 2344322221
Q ss_pred EEeehh-----hhhc--CChHHHHHHH---------------------------------------------------HH
Q 008124 91 AVATAA-----VRAA--ENKDEFVECV---------------------------------------------------RE 112 (577)
Q Consensus 91 ~vATsA-----~R~A--~N~~~fl~~i---------------------------------------------------~~ 112 (577)
++.++. +.-. -+.+++-+.| -+
T Consensus 74 alp~~~~~~r~~~~p~~i~~~el~~~i~~e~~~~ip~~~~e~~~D~~~~~~~~~~~~~~~~v~v~a~~~~~v~~~~~~~~ 153 (348)
T TIGR01175 74 AVPGSAVITKVIPVPAGLDERELEFAVYIEASHYIPYPIEEVSLDFEKLGLKANNPESTVQVLLAATRKEVVDSRLHALK 153 (348)
T ss_pred EecCCeeEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCHHHheeeeEEccCCCCCCCceEEEEEEEecHHHHHHHHHHHH
Confidence 111111 0000 1222222222 12
Q ss_pred HcCCcEEEeChHHHHHHHHhhhhc-cCC--CCCC-ceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHHhh
Q 008124 113 KVGFEVDVLTGEQEAKFVYMGVLQ-FLP--VFDR-LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (577)
Q Consensus 113 ~tGl~i~VIsg~eEA~l~~~gv~~-~~~--~~~~-~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f 182 (577)
..|+++..|+-+-=|....+.... .+. .... +.+++|||+++|.++++++|.+.+..++|+|.-.+++..
T Consensus 154 ~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~~r~i~~G~~~i~~~i 227 (348)
T TIGR01175 154 LAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLFTREVPFGTRQLTSEL 227 (348)
T ss_pred HcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEEEEEeechHHHHHHHH
Confidence 345555555544444333332111 111 1122 389999999999999999999999999999999988765
No 14
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.11 E-value=0.00015 Score=77.41 Aligned_cols=40 Identities=23% Similarity=0.486 Sum_probs=36.4
Q ss_pred CceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHHhh
Q 008124 143 RLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (577)
Q Consensus 143 ~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f 182 (577)
...+++|||||+|.++++.+|.+.+..++|+|.-.+++..
T Consensus 196 ~~~~vvDiG~gtt~i~i~~~g~~~~~~~i~~GG~~it~~i 235 (371)
T TIGR01174 196 LGVCLIDIGGGTTDIAVYTGGSIRYTKVIPIGGNHITKDI 235 (371)
T ss_pred CCEEEEEeCCCcEEEEEEECCEEEEEeeecchHHHHHHHH
Confidence 3579999999999999999999999999999998888765
No 15
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.07 E-value=0.00019 Score=77.06 Aligned_cols=41 Identities=27% Similarity=0.490 Sum_probs=37.9
Q ss_pred ceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHHhhcC
Q 008124 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGT 184 (577)
Q Consensus 144 ~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~~ 184 (577)
..+++|||||+|.++++.+|.+.+..++|+|.-.+|+..-.
T Consensus 204 Gv~lIDiG~GTTdIai~~~G~l~~~~~ipvgG~~vT~DIa~ 244 (418)
T COG0849 204 GVALIDIGGGTTDIAIYKNGALRYTGVIPVGGDHVTKDIAK 244 (418)
T ss_pred CeEEEEeCCCcEEEEEEECCEEEEEeeEeeCccHHHHHHHH
Confidence 58999999999999999999999999999999999986543
No 16
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=97.74 E-value=8.1e-05 Score=64.67 Aligned_cols=101 Identities=20% Similarity=0.180 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCC----------CCchhhhHHHHHc
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK----------KGYHKQSCHIIMN 430 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~----------~~h~~Hs~yiI~n 430 (577)
.|+..|+.++..+.+++.. .++..+.+||+|||+|....+ ..|..++++++.+
T Consensus 7 ~H~~~v~~~~~~l~~~~~~-----------------~~~~~~~~a~LlHDig~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 69 (124)
T smart00471 7 EHSLRVAQLAAALAEELGL-----------------LDIELLLLAALLHDIGKPGTPDSFLVKTSVLEDHHFIGAEILLE 69 (124)
T ss_pred HHHHHHHHHHHHHHHHcCh-----------------HHHHHHHHHHHHHcccCccCCHHHhcCccHHHHhHHHHHHHHHh
Confidence 6999999999988766542 123578999999999999985 7899999999977
Q ss_pred CCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhcCCChHHHHHHHHHHHHHHHHHHhccccC
Q 008124 431 GDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDC 493 (577)
Q Consensus 431 s~~l~G~s~~E~~~iA~i~~yhrk~~~~~~~~~~~~l~~~~~~~v~kL~~iLRlA~~Ld~s~~ 493 (577)
.++++....+...+++||....... .. .....++.++++|+.++..+.
T Consensus 70 ----~~~~~~~~~~~~~~i~~h~~~~~~~--------~~---~~~~~~~~il~~aD~~~~~~~ 117 (124)
T smart00471 70 ----EEEPRILEEILATAILSHHERPDGL--------RG---EPITLEARIVKVADRLDALRR 117 (124)
T ss_pred ----CCCCHHHHHHHhhHHHHhccccCCC--------CC---CcCCHHHHHHHHHHHHHHHhc
Confidence 4678888887777888887654420 00 112347788999999887654
No 17
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=97.74 E-value=7.1e-05 Score=66.50 Aligned_cols=112 Identities=21% Similarity=0.152 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhccccc-----------CCCCchhhhHHHHH
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFT-----------SKKGYHKQSCHIIM 429 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I-----------~~~~h~~Hs~yiI~ 429 (577)
.|+..|+.+|..+++.... +..++..+.+||+|||+|... ....|.++|+.++.
T Consensus 5 ~Hs~~v~~~~~~~~~~~~~---------------~~~~~~~l~~aaLlHDig~~~~~~~~~~~~~~~~~~h~~~g~~~~~ 69 (145)
T cd00077 5 EHSLRVAQLARRLAEELGL---------------SEEDIELLRLAALLHDIGKPGTPDAITEEESELEKDHAIVGAEILR 69 (145)
T ss_pred HHHHHHHHHHHHHHHHhCc---------------CHHHHHHHHHHHHHHhcCCccCccccCHHHHHHHHhhHHHHHHHHH
Confidence 6999999999988766532 113457899999999999976 46788899999987
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhcCCChHHHHHHHHHHHHHHHHHHhccccC
Q 008124 430 NGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDC 493 (577)
Q Consensus 430 ns~~l~G~s~~E~~~iA~i~~yhrk~~~~~~~~~~~~l~~~~~~~v~kL~~iLRlA~~Ld~s~~ 493 (577)
+-. ..+..+....++..+..+|....+........ .-.....++.++++|+.++....
T Consensus 70 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~AD~~~~~~~ 127 (145)
T cd00077 70 ELL-LEEVIKLIDELILAVDASHHERLDGLGYPDGL-----KGEEITLEARIVKLADRLDALRR 127 (145)
T ss_pred Hhh-hcccccccHHHHHHHHHHcccCCCCCCCCCCC-----CcccCCHHHHHHHHHHHHHHHhc
Confidence 643 34444445555555554554443332211110 11223568889999999986654
No 18
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=97.50 E-value=0.00047 Score=65.06 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=71.0
Q ss_pred HHHHHhCCcc-cchhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCC-CCchhhhHH
Q 008124 349 RLAMRFNNKK-RVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK-KGYHKQSCH 426 (577)
Q Consensus 349 ~l~~ry~~d~-~~~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~-~~h~~Hs~y 426 (577)
.+.++|..+. ...|+.+|+.+|..|-..+.. .+. +.+..++.+||+|||||+...+ ..|..-++.
T Consensus 3 ~ll~~~~~~~~~~~Hs~~Va~~A~~ia~~~~~-~~~------------~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~~ 69 (164)
T TIGR00295 3 RLLDKYKCDESVRRHCLAVARVAMELAENIRK-KGH------------EVDMDLVLKGALLHDIGRARTHGFEHFVKGAE 69 (164)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHhcc-ccc------------cCCHHHHHHHHHHhcCCcccCCCCCHHHHHHH
Confidence 3455565543 227999999999987655531 111 1245789999999999998765 468888999
Q ss_pred HHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhcCCChHHHHHHHHHHHHHHHHHHhcc
Q 008124 427 IIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQ 490 (577)
Q Consensus 427 iI~ns~~l~G~s~~E~~~iA~i~~yhrk~~~~~~~~~~~~l~~~~~~~v~kL~~iLRlA~~Ld~ 490 (577)
++.+. ||+.. ++..+.+++....|......+ .+++.+..-....+.|+.+||.|..
T Consensus 70 iL~~~----g~~~~---i~~iI~~H~~~g~p~~~~~~~-~l~~~~~~p~t~ea~IV~~AD~l~~ 125 (164)
T TIGR00295 70 ILRKE----GVDEK---IVRIAERHFGAGINAEEASKL-GLPPKDYMPETLEEKIVAHADNLIM 125 (164)
T ss_pred HHHHc----CCCHH---HHHHHHHHhCCCCchhhHhhc-CCCcccCCCCCHHHHHHHHHHHhcc
Confidence 88754 55532 222233444444442111111 1222211112246779999999964
No 19
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.50 E-value=0.0012 Score=71.09 Aligned_cols=153 Identities=22% Similarity=0.323 Sum_probs=90.1
Q ss_pred eEEEEEecccceEEEEEEEeCC---C-----CEEEEEeeeeeeeecc----CCCcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 008124 14 LFASIDMGTSSFKLLIIRAYPN---G-----KFLTIDTLKQPVILGR----DLSSSCSISTQSQARSVESLLMFRDIIQS 81 (577)
Q Consensus 14 ~~AvIDIGSNSirL~I~~~~~~---~-----~~~~l~~~k~~vrLg~----~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~ 81 (577)
+-..|||||.+..|++.++.-. + ++.+++ |+.+-=++ =+.+...|..+++++.++. +|++
T Consensus 7 ~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~d--kev~yrS~i~fTPl~~~~~ID~~~i~~~V~~--ey~~---- 78 (475)
T PRK10719 7 LSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIID--KEIIYRSPIYFTPLLKQGEIDEAAIKELIEE--EYQK---- 78 (475)
T ss_pred EEEEEeccCceEEEEEEEEEEecccccccCceEEEee--eEEEEecCceecCCCCCccccHHHHHHHHHH--HHHH----
Confidence 3478999999999999987521 1 244443 33221111 1223467888888877654 3332
Q ss_pred cCCCcccEE---EEeehhhhhcCChHHHHHHHHHHc--------CCcEEEeChHHHHHHHHhhhhcc-CC-CCCCceEEE
Q 008124 82 HNISRDHTR---AVATAAVRAAENKDEFVECVREKV--------GFEVDVLTGEQEAKFVYMGVLQF-LP-VFDRLVLSV 148 (577)
Q Consensus 82 ~~v~~~~i~---~vATsA~R~A~N~~~fl~~i~~~t--------Gl~i~VIsg~eEA~l~~~gv~~~-~~-~~~~~~lvi 148 (577)
-|+.++.|. .+=|...-...|....+++.-... |+++ |+.+..+|.... +. ..+...+++
T Consensus 79 Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~l-------e~iva~~ASg~avLseEke~gVa~I 151 (475)
T PRK10719 79 AGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDL-------ESIIAGKGAGAQTLSEERNTRVLNI 151 (475)
T ss_pred cCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccH-------HHhhhHHHhhHHHhhhhccCceEEE
Confidence 133332221 122333333356666666643332 4433 333333332211 21 233458999
Q ss_pred EeCCCceEEEEeeCCeEEEEEEEehhHHHHHHh
Q 008124 149 DIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEK 181 (577)
Q Consensus 149 DIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~ 181 (577)
|||||+|.++++.+|++.++.++|+|.-.++..
T Consensus 152 DIGgGTT~iaVf~~G~l~~T~~l~vGG~~IT~D 184 (475)
T PRK10719 152 DIGGGTANYALFDAGKVIDTACLNVGGRLIETD 184 (475)
T ss_pred EeCCCceEEEEEECCEEEEEEEEecccceEEEC
Confidence 999999999999999999999999999877764
No 20
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=97.50 E-value=0.0025 Score=66.71 Aligned_cols=117 Identities=19% Similarity=0.251 Sum_probs=68.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHc-CCCcccEE-EEeehhhhhcCChHHHHHHHHHHcC-CcEEEeChHHHHHHHHh
Q 008124 56 SSCSISTQSQARSVESLLMFRDIIQSH-NISRDHTR-AVATAAVRAAENKDEFVECVREKVG-FEVDVLTGEQEAKFVYM 132 (577)
Q Consensus 56 ~~g~Ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~-~vATsA~R~A~N~~~fl~~i~~~tG-l~i~VIsg~eEA~l~~~ 132 (577)
.+|.|++ .+.+-.-|+.|-+.+... .+. +.+ +++.-+==....++.+.+.++. .| -+|.+|+.. ....+
T Consensus 64 ~~GvI~D--~~~~~~~l~~~l~k~~~~~~~~--~p~vvi~vP~~~T~verrA~~~a~~~-aGa~~V~li~ep---~AaAi 135 (326)
T PF06723_consen 64 KDGVIAD--YEAAEEMLRYFLKKALGRRSFF--RPRVVICVPSGITEVERRALIDAARQ-AGARKVYLIEEP---IAAAI 135 (326)
T ss_dssp ETTEESS--HHHHHHHHHHHHHHHHTSS-SS----EEEEEE-SS--HHHHHHHHHHHHH-TT-SEEEEEEHH---HHHHH
T ss_pred cCCcccC--HHHHHHHHHHHHHHhccCCCCC--CCeEEEEeCCCCCHHHHHHHHHHHHH-cCCCEEEEecch---HHHHh
Confidence 3466653 334445566776655542 222 222 2332221122344568888765 56 568888755 55555
Q ss_pred hhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHHh
Q 008124 133 GVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEK 181 (577)
Q Consensus 133 gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~ 181 (577)
|+-..... ....+++|||||+||+++..-|.+..+.|+++|.-.+-+.
T Consensus 136 GaGl~i~~-~~g~miVDIG~GtTdiavislggiv~s~si~~gG~~~Dea 183 (326)
T PF06723_consen 136 GAGLDIFE-PRGSMIVDIGGGTTDIAVISLGGIVASRSIRIGGDDIDEA 183 (326)
T ss_dssp HTT--TTS-SS-EEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHH
T ss_pred cCCCCCCC-CCceEEEEECCCeEEEEEEECCCEEEEEEEEecCcchhHH
Confidence 54433322 2347999999999999999999999999999999887764
No 21
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.19 E-value=0.006 Score=64.42 Aligned_cols=40 Identities=38% Similarity=0.553 Sum_probs=34.1
Q ss_pred ceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHHhhc
Q 008124 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFG 183 (577)
Q Consensus 144 ~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~ 183 (577)
..+++|||..+|+++++.+|++.++.++++|.-.+++.+.
T Consensus 181 ~~~lvdiG~~~t~~~i~~~g~~~f~R~i~~G~~~l~~~i~ 220 (340)
T PF11104_consen 181 TVALVDIGASSTTVIIFQNGKPIFSRSIPIGGNDLTEAIA 220 (340)
T ss_dssp EEEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHH
T ss_pred eEEEEEecCCeEEEEEEECCEEEEEEEEeeCHHHHHHHHH
Confidence 4689999999999999999999999999999999998654
No 22
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.19 E-value=0.0072 Score=65.27 Aligned_cols=152 Identities=23% Similarity=0.295 Sum_probs=99.6
Q ss_pred EEEEEecccceEEEEEEEeC---CC-----CEEEEEeeeeeeeeccC----CCcCCCCCHHHHHHHHHHHHHHHHHHHHc
Q 008124 15 FASIDMGTSSFKLLIIRAYP---NG-----KFLTIDTLKQPVILGRD----LSSSCSISTQSQARSVESLLMFRDIIQSH 82 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~---~~-----~~~~l~~~k~~vrLg~~----~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~ 82 (577)
-..|||||.+..|++.++.= .+ ++.+++ |+.+-=+.= +.+...|..+++++.++ ++|++ -
T Consensus 5 SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~d--keViYrS~I~fTPl~~~~~ID~~al~~iv~--~eY~~----A 76 (473)
T PF06277_consen 5 SVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVD--KEVIYRSPIYFTPLLSQTEIDAEALKEIVE--EEYRK----A 76 (473)
T ss_pred EEEEeecCCceeEEEEEeEEEeccCCCccceEEEec--cEEEecCCccccCCCCCCccCHHHHHHHHH--HHHHH----c
Confidence 46899999999999998641 11 234443 333211111 12346777888777664 34433 2
Q ss_pred CCCcccE----EEEeehhhhhcCChHHHHHHHHHHcCCcEE-EeChHHHHHHHHhhhhcc-CC-CCCCceEEEEeCCCce
Q 008124 83 NISRDHT----RAVATAAVRAAENKDEFVECVREKVGFEVD-VLTGEQEAKFVYMGVLQF-LP-VFDRLVLSVDIGGGST 155 (577)
Q Consensus 83 ~v~~~~i----~~vATsA~R~A~N~~~fl~~i~~~tGl~i~-VIsg~eEA~l~~~gv~~~-~~-~~~~~~lviDIGGGSt 155 (577)
|+.+++| .++.-++.|+ +|++++++.+....|==|= -=-..=|+-+...|.-.. +. ......+=+|||||.|
T Consensus 77 gi~p~~I~TGAVIITGETArK-eNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTt 155 (473)
T PF06277_consen 77 GITPEDIDTGAVIITGETARK-ENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTT 155 (473)
T ss_pred CCCHHHCccccEEEecchhhh-hhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCce
Confidence 5554443 1222344444 7999999999999883333 333466888888876432 21 1234578899999999
Q ss_pred EEEEeeCCeEEEEEEEehhH
Q 008124 156 EFVIGKRGKVVFCESVNLGH 175 (577)
Q Consensus 156 El~~~~~~~~~~~~SlplG~ 175 (577)
-+++|++|++..+..|.+|.
T Consensus 156 N~avf~~G~v~~T~cl~IGG 175 (473)
T PF06277_consen 156 NIAVFDNGEVIDTACLDIGG 175 (473)
T ss_pred eEEEEECCEEEEEEEEeecc
Confidence 99999999999999999996
No 23
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=97.18 E-value=0.0045 Score=61.48 Aligned_cols=118 Identities=15% Similarity=0.050 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCCchh
Q 008124 343 RWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHK 422 (577)
Q Consensus 343 ~~~s~~~l~~ry~~d~~~~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~~~h~~ 422 (577)
..+.+..+++...-+....|+.+|..+|..|-.+-.+-++ -+..+|..||+|||||..-.+.+..+
T Consensus 40 l~~~a~~~~~~~l~~~~~~Hs~RV~~~a~~ia~~e~~~~~--------------~D~evl~lAALLHDIG~~~~~~~~~~ 105 (228)
T TIGR03401 40 LVKFAQEYAKARLPPETYNHSLRVYYYGLAIARDQFPEWD--------------LSDETWFLTCLLHDIGTTDENMTATK 105 (228)
T ss_pred HHHHHHHHHHhhCCHhhhHHHHHHHHHHHHHHHHhccccC--------------CCHHHHHHHHHHHhhccccccCCccc
Confidence 3344555555543333448999999999875332111122 23468999999999998433322122
Q ss_pred hhH--H------HHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhcCCChHHHHHHHHHHHHHHHHHHhcc
Q 008124 423 QSC--H------IIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQ 490 (577)
Q Consensus 423 Hs~--y------iI~ns~~l~G~s~~E~~~iA~i~~yhrk~~~~~~~~~~~~l~~~~~~~v~kL~~iLRlA~~Ld~ 490 (577)
.+| + =++.. ..|++..+...+..++..|+..-.. .+ +..++.||..|+.||.
T Consensus 106 ~~fe~~ga~~A~~~L~~--~~G~~~~~~~~V~~aI~~H~~~~~~---~~-----------~~~e~~lvq~Ad~lDa 165 (228)
T TIGR03401 106 MSFEFYGGILALDVLKE--QTGANQDQAEAVAEAIIRHQDLGVD---GT-----------ITTLGQLLQLATIFDN 165 (228)
T ss_pred CCHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHhCCCCC---CC-----------cCHHHHHHHHHHHHhH
Confidence 222 1 22333 1389999999999999889542211 11 1226889999999985
No 24
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=97.12 E-value=0.01 Score=62.46 Aligned_cols=118 Identities=17% Similarity=0.195 Sum_probs=71.9
Q ss_pred cCCCCCH-HHHHHHHHHHHHHHHHHHHc-CCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHh
Q 008124 56 SSCSIST-QSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYM 132 (577)
Q Consensus 56 ~~g~Ls~-e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i-~VIsg~eEA~l~~~ 132 (577)
.+|.+.+ +.+++.+ +.+.+.++.. ... .-+++-|--.---.+....+...-+..|+++ .+++...=|-+.|
T Consensus 66 ~~G~i~d~~~~~~~l---~~~~~~~~~~~~~~--~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~- 139 (336)
T PRK13928 66 RDGVIADYDVTEKML---KYFINKACGKRFFS--KPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGA- 139 (336)
T ss_pred CCCeEecHHHHHHHH---HHHHHHHhccCCCC--CCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHc-
Confidence 3466654 4455444 4443333222 121 2234444333223456677777778889985 5665555444433
Q ss_pred hhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHHhh
Q 008124 133 GVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (577)
Q Consensus 133 gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f 182 (577)
|. ... ....++++|||||+|+++++..+.+....++++|.--+++..
T Consensus 140 g~--~~~-~~~~~lVvDiGggttdvsvv~~g~~~~~~~~~lGG~did~~i 186 (336)
T PRK13928 140 GL--DIS-QPSGNMVVDIGGGTTDIAVLSLGGIVTSSSIKVAGDKFDEAI 186 (336)
T ss_pred CC--ccc-CCCeEEEEEeCCCeEEEEEEEeCCEEEeCCcCCHHHHHHHHH
Confidence 22 222 223489999999999999999998888889999998887754
No 25
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=96.85 E-value=0.026 Score=59.46 Aligned_cols=118 Identities=23% Similarity=0.263 Sum_probs=69.6
Q ss_pred cCCCCC-HHHHHHHHHHHHHHHHHHH-HcCCCccc-EEEEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHH
Q 008124 56 SSCSIS-TQSQARSVESLLMFRDIIQ-SHNISRDH-TRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVY 131 (577)
Q Consensus 56 ~~g~Ls-~e~i~r~~~~L~~f~~~~~-~~~v~~~~-i~~vATsA~R~A~N~~~fl~~i~~~tGl~i-~VIsg~eEA~l~~ 131 (577)
.+|.+. .+.++.. |+.+...+. ..+..... -.+++..+.-...+++.+.+ .-+..|+++ .+++..-=|-+.|
T Consensus 67 ~~G~I~d~d~~~~~---l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~ 142 (335)
T PRK13929 67 KDGVIADYDMTTDL---LKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGA 142 (335)
T ss_pred CCCccCCHHHHHHH---HHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhc
Confidence 345553 3554444 444444332 34543221 22344344434445666666 445679885 5565554444432
Q ss_pred hhhhccCCC-CCCceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHHhh
Q 008124 132 MGVLQFLPV-FDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (577)
Q Consensus 132 ~gv~~~~~~-~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f 182 (577)
| ++. ....++++|||||+|+++++..+.+....++++|.--+++..
T Consensus 143 -g----~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~~~~~GG~~id~~l 189 (335)
T PRK13929 143 -D----LPVDEPVANVVVDIGGGTTEVAIISFGGVVSCHSIRIGGDQLDEDI 189 (335)
T ss_pred -C----CCcCCCceEEEEEeCCCeEEEEEEEeCCEEEecCcCCHHHHHHHHH
Confidence 2 221 224589999999999999998777888889999988887643
No 26
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=96.74 E-value=0.042 Score=57.70 Aligned_cols=88 Identities=22% Similarity=0.229 Sum_probs=55.6
Q ss_pred EEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEE
Q 008124 91 AVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCE 169 (577)
Q Consensus 91 ~vATsA~R~A~N~~~fl~~i~~~tGl~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~ 169 (577)
+|.|.-.---+...+.+.++-+..|++. .+++.. -...++...... ....++++|+|||.|+++.+..|.+....
T Consensus 103 vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~ep---~AAa~a~g~~~~-~~~~~lVvDiG~gttdvs~v~~g~~~~~~ 178 (335)
T PRK13930 103 IVICVPSGITEVERRAVREAAEHAGAREVYLIEEP---MAAAIGAGLPVT-EPVGNMVVDIGGGTTEVAVISLGGIVYSE 178 (335)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcCCCeEEecccH---HHHHHhcCCCcC-CCCceEEEEeCCCeEEEEEEEeCCEEeec
Confidence 3444333222333445555666788875 455433 333333221111 12347999999999999999999988888
Q ss_pred EEehhHHHHHHhh
Q 008124 170 SVNLGHVSLSEKF 182 (577)
Q Consensus 170 SlplG~vrl~e~f 182 (577)
..++|..-+++..
T Consensus 179 ~~~lGG~~id~~l 191 (335)
T PRK13930 179 SIRVAGDEMDEAI 191 (335)
T ss_pred CcCchhHHHHHHH
Confidence 8999998888754
No 27
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.68 E-value=0.049 Score=56.03 Aligned_cols=72 Identities=26% Similarity=0.347 Sum_probs=55.3
Q ss_pred HHcCCcEEEeChHHHHHHHHhhhh-ccCCCCCC--ceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHHhhc
Q 008124 112 EKVGFEVDVLTGEQEAKFVYMGVL-QFLPVFDR--LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFG 183 (577)
Q Consensus 112 ~~tGl~i~VIsg~eEA~l~~~gv~-~~~~~~~~--~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~ 183 (577)
+..|+++.|++=+.=|-+..+... +.+..... ..+++|||+-||++.+..+|++.+....|+|+--|++.+.
T Consensus 159 ~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly~r~~~~g~~Qlt~~i~ 233 (354)
T COG4972 159 ELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILYTREVPVGTDQLTQEIQ 233 (354)
T ss_pred HHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeeeEeeccCcHHHHHHHHH
Confidence 346999999988887777766632 22221111 2469999999999999999999999999999999988654
No 28
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=96.66 E-value=0.014 Score=58.69 Aligned_cols=129 Identities=16% Similarity=0.211 Sum_probs=80.9
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEee
Q 008124 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (577)
+..||+||.|++.++++ + | +++..... +.+.. .+..++++++. +++.+.+..++..++.
T Consensus 2 ~lGIDiGtts~K~vl~d-~--g--~il~~~~~---------~~~~~----~~~~~~~l~~~---~~~~~~~~~~i~~i~~ 60 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLME-D--G--KVIGYKWL---------DTTPV----IEETARAILEA---LKEAGIGLEPIDKIVA 60 (248)
T ss_pred EEEEEcChhheEEEEEc-C--C--EEEEEEEe---------cCCCC----HHHHHHHHHHH---HHHcCCChhheeEEEE
Confidence 46799999999999996 3 4 34544332 11111 22233444443 4455665556666655
Q ss_pred hhhh-hcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEE---EEEE
Q 008124 95 AAVR-AAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVV---FCES 170 (577)
Q Consensus 95 sA~R-~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~---~~~S 170 (577)
+.-+ ..-. | .+ .. ..|.-....|+..-.|. . -.++||||..|-++.+++|++. ....
T Consensus 61 Tg~~~~~v~---~-------~~---~~---~~ei~~~~~g~~~~~~~--~-~~vidiGgqd~k~i~~~~g~~~~~~~n~~ 121 (248)
T TIGR00241 61 TGYGRHKVG---F-------AD---KI---VTEISCHGKGANYLAPE--A-RGVIDIGGQDSKVIKIDDGKVDDFTMNDK 121 (248)
T ss_pred ECCCccccc---c-------cC---Cc---eEEhhHHHHHHHHHCCC--C-CEEEEecCCeeEEEEECCCcEeeeeecCc
Confidence 4443 3221 1 01 11 23555666777776663 2 2699999999999999999877 5666
Q ss_pred EehhHHHHHHhhc
Q 008124 171 VNLGHVSLSEKFG 183 (577)
Q Consensus 171 lplG~vrl~e~f~ 183 (577)
...|+-++.|...
T Consensus 122 ca~Gtg~f~e~~a 134 (248)
T TIGR00241 122 CAAGTGRFLEVTA 134 (248)
T ss_pred ccccccHHHHHHH
Confidence 7889999988764
No 29
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=96.61 E-value=0.0091 Score=62.43 Aligned_cols=122 Identities=15% Similarity=0.168 Sum_probs=70.6
Q ss_pred HHHHHHHHHhCCcc-cchhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCC-Cchh
Q 008124 345 RSVVRLAMRFNNKK-RVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK-GYHK 422 (577)
Q Consensus 345 ~s~~~l~~ry~~d~-~~~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~~-~h~~ 422 (577)
..+.++..+|..+. ...|..+|+++|..|-+++ ++ +..++.+||+|||||..-.+. +|..
T Consensus 173 ee~l~Ll~k~~~~e~l~~Hs~rVa~lA~~LA~~~----~~--------------D~~ll~aAALLHDIGK~k~~~~~H~~ 234 (339)
T PRK12703 173 DQCLDLLKKYGASDLLIRHVKTVYKLAMRIADCI----NA--------------DRRLVAAGALLHDIGRTKTNGIDHAV 234 (339)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHc----CC--------------CHHHHHHHHHHHhcccccccCCCHHH
Confidence 34456677775543 2379999999998864332 21 246889999999999987754 6777
Q ss_pred hhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhcCCChHHHHHHHHHHHHHHHHHHhcccc
Q 008124 423 QSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQND 492 (577)
Q Consensus 423 Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhrk~~~~~~~~~~~~l~~~~~~~v~kL~~iLRlA~~Ld~s~ 492 (577)
-++.++.. .||+.. ++..+.+++....+... .....|++.+..-...-+.|+..||.|....
T Consensus 235 ~Ga~iL~e----~G~~e~---i~~iIe~H~g~G~~~~~-~~~~gL~~~~~~P~TLEakIV~dADrL~~~~ 296 (339)
T PRK12703 235 AGAEILRK----ENIDDR---VVSIVERHIGAGITSEE-AQKLGLPVKDYVPETIEEMIVAHADNLFAGD 296 (339)
T ss_pred HHHHHHHH----CCCCHH---HHHHHHHHhccCCCcch-hhccCCccccCCCCCHHHHHHHHHHHHhcCC
Confidence 78777764 356643 33333333333333211 0001122111111122456899999997654
No 30
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=96.48 E-value=0.055 Score=56.89 Aligned_cols=75 Identities=24% Similarity=0.282 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHHhh
Q 008124 104 DEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (577)
Q Consensus 104 ~~fl~~i~~~tGl~-i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f 182 (577)
.+.+..+-+..|++ +.+++..--|-|.| |. ... .+..++++|+|||+|+++.+..+.+....+.++|.-.+++..
T Consensus 114 r~~~~~~~~~ag~~~~~li~ep~aaa~~~-g~--~~~-~~~~~lVvDiG~gttdvs~v~~~~~~~~~~~~lGG~did~~l 189 (333)
T TIGR00904 114 RRAVKESALSAGAREVYLIEEPMAAAIGA-GL--PVE-EPTGSMVVDIGGGTTEVAVISLGGIVVSRSIRVGGDEFDEAI 189 (333)
T ss_pred HHHHHHHHHHcCCCeEEEecCHHHHHHhc-CC--ccc-CCceEEEEEcCCCeEEEEEEEeCCEEecCCccchHHHHHHHH
Confidence 34455566677888 45666665555543 21 111 223579999999999999997676777778889988877754
No 31
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=96.37 E-value=0.074 Score=55.87 Aligned_cols=89 Identities=22% Similarity=0.217 Sum_probs=55.9
Q ss_pred EEeehhhhhcCChHHHHHHHHHHcCCcEE-EeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEE
Q 008124 91 AVATAAVRAAENKDEFVECVREKVGFEVD-VLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCE 169 (577)
Q Consensus 91 ~vATsA~R~A~N~~~fl~~i~~~tGl~i~-VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~ 169 (577)
+|-|.-.---.++...+...-+..|++.- +++...-|-+.| | .... ....++++|+|||+|+++.+..+.+....
T Consensus 99 ~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~-g--~~~~-~~~~~lvvDiGggttdvs~v~~~~~~~~~ 174 (334)
T PRK13927 99 VVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGA-G--LPVT-EPTGSMVVDIGGGTTEVAVISLGGIVYSK 174 (334)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHc-C--Cccc-CCCeEEEEEeCCCeEEEEEEecCCeEeeC
Confidence 34443333334455566666677888743 444443333332 2 2111 12347999999999999999777677777
Q ss_pred EEehhHHHHHHhhc
Q 008124 170 SVNLGHVSLSEKFG 183 (577)
Q Consensus 170 SlplG~vrl~e~f~ 183 (577)
+.++|.-.+++.+.
T Consensus 175 ~~~lGG~~id~~l~ 188 (334)
T PRK13927 175 SVRVGGDKFDEAII 188 (334)
T ss_pred CcCChHHHHHHHHH
Confidence 88999888887553
No 32
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=96.33 E-value=0.011 Score=47.83 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCC-----CCchhhhHHHHHcCCCCC
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK-----KGYHKQSCHIIMNGDHLY 435 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~-----~~h~~Hs~yiI~ns~~l~ 435 (577)
.|+..|+.+|..+ .+..++ + ...+.+||+|||||+...+ .+|...+++++...
T Consensus 7 ~H~~~v~~~a~~l----a~~~~~-----------~---~~~l~~AalLHDiG~~~~~~~~~~~~H~~~g~~~l~~~---- 64 (80)
T TIGR00277 7 QHSLEVAKLAEAL----ARELGL-----------D---VELARRGALLHDIGKPITREGVIFESHAVVGAEIARKY---- 64 (80)
T ss_pred HHHHHHHHHHHHH----HHHcCC-----------C---HHHHHHHHHHHccCCcccchHHHHHchHHHHHHHHHHc----
Confidence 6889999998875 333332 1 2458899999999999864 56788888888644
Q ss_pred CCCHHHHHHHHHHHHhcc
Q 008124 436 GYSTDEIKLIALLTRFHR 453 (577)
Q Consensus 436 G~s~~E~~~iA~i~~yhr 453 (577)
|++. .+..++++|.
T Consensus 65 ~~~~----~~~~~I~~Hh 78 (80)
T TIGR00277 65 GEPL----EVIDIIAEHH 78 (80)
T ss_pred CCCH----HHHHHHHHHc
Confidence 3443 3455555654
No 33
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=96.30 E-value=0.016 Score=64.44 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCC---CchhhhHHHHHcCCCCCCC
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---GYHKQSCHIIMNGDHLYGY 437 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~~---~h~~Hs~yiI~ns~~l~G~ 437 (577)
.|+..|+.+|..| +..+|+ + ...+..|++|||||+.+.+. +|..-|++++...+ +
T Consensus 332 ~Hs~~VA~lA~~L----A~~lgl-----------d---~~~a~~AGLLHDIGK~~~~e~~~~H~~~Ga~ll~~~~----~ 389 (514)
T TIGR03319 332 QHSIEVAHLAGIM----AAELGE-----------D---VKLAKRAGLLHDIGKAVDHEVEGSHVEIGAELAKKYK----E 389 (514)
T ss_pred HHHHHHHHHHHHH----HHHhCc-----------C---HHHHHHHHHHHhcCcccchhhcccHHHHHHHHHHHcC----C
Confidence 6999999999875 444443 1 24577899999999986543 57777788886553 3
Q ss_pred CHHHHHHHHHHHHhccCCCCCCCchhhcCCChHHHHHHHHHHHHHHHHHHhccccCCC
Q 008124 438 STDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDCVN 495 (577)
Q Consensus 438 s~~E~~~iA~i~~yhrk~~~~~~~~~~~~l~~~~~~~v~kL~~iLRlA~~Ld~s~~~~ 495 (577)
+ ..+...++||....++ ...++.++.+|+.|+.++.+.
T Consensus 390 ~----~~V~~aI~~HH~~~~~----------------~~~~a~IV~~AD~lsa~rpga 427 (514)
T TIGR03319 390 S----PEVVNAIAAHHGDVEP----------------TSIEAVLVAAADALSAARPGA 427 (514)
T ss_pred C----HHHHHHHHHhCCCCCC----------------CCHHHHHHHHHHHhcCCCCCC
Confidence 3 2455666666542211 024777888888888776543
No 34
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=96.30 E-value=0.014 Score=55.81 Aligned_cols=144 Identities=24% Similarity=0.317 Sum_probs=86.5
Q ss_pred CCceEEEEEecccceEEEEEEEeCCCC-EEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHH-HHcCCCccc
Q 008124 11 PQTLFASIDMGTSSFKLLIIRAYPNGK-FLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDII-QSHNISRDH 88 (577)
Q Consensus 11 ~~~~~AvIDIGSNSirL~I~~~~~~~~-~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~-~~~~v~~~~ 88 (577)
..++.-.+|+|+-+|-..|.+- +|. .-....+...||=|--.+ .-.+++..++.++.+ +++|+.
T Consensus 27 ~sk~~vGVDLGT~~iV~~vlD~--d~~Pvag~~~~advVRDGiVvd---------f~eaveiVrrlkd~lEk~lGi~--- 92 (277)
T COG4820 27 ESKLWVGVDLGTCDIVSMVLDR--DGQPVAGCLDWADVVRDGIVVD---------FFEAVEIVRRLKDTLEKQLGIR--- 92 (277)
T ss_pred cCceEEEeecccceEEEEEEcC--CCCeEEEEehhhhhhccceEEe---------hhhHHHHHHHHHHHHHHhhCeE---
Confidence 3468899999999998888753 454 334445555666443322 334566677776654 345762
Q ss_pred EEEEeehhhhh---cCChHHHHHHHHHHcCCcEE-EeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCe
Q 008124 89 TRAVATAAVRA---AENKDEFVECVREKVGFEVD-VLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGK 164 (577)
Q Consensus 89 i~~vATsA~R~---A~N~~~fl~~i~~~tGl~i~-VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~ 164 (577)
+.=-+|+ +-- --|....++-|+ ..|+++- +|+...-|.+ -+.. +++.++|||||.|.++++++|+
T Consensus 93 ~tha~ta-iPPGt~~~~~ri~iNViE-SAGlevl~vlDEPTAaa~-------vL~l--~dg~VVDiGGGTTGIsi~kkGk 161 (277)
T COG4820 93 FTHAATA-IPPGTEQGDPRISINVIE-SAGLEVLHVLDEPTAAAD-------VLQL--DDGGVVDIGGGTTGISIVKKGK 161 (277)
T ss_pred eeecccc-CCCCccCCCceEEEEeec-ccCceeeeecCCchhHHH-------Hhcc--CCCcEEEeCCCcceeEEEEcCc
Confidence 2222332 211 113333333343 4587754 6666543322 2233 3379999999999999999999
Q ss_pred EEEEEEEehhHHHHH
Q 008124 165 VVFCESVNLGHVSLS 179 (577)
Q Consensus 165 ~~~~~SlplG~vrl~ 179 (577)
++++.-=|-|.--++
T Consensus 162 Viy~ADEpTGGtHmt 176 (277)
T COG4820 162 VIYSADEPTGGTHMT 176 (277)
T ss_pred EEEeccCCCCceeEE
Confidence 998876666654333
No 35
>PRK12705 hypothetical protein; Provisional
Probab=96.17 E-value=0.025 Score=62.36 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCC---CchhhhHHHHHcCCCCCCC
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---GYHKQSCHIIMNGDHLYGY 437 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~~---~h~~Hs~yiI~ns~~l~G~ 437 (577)
.|+..|+.+|..| +...|+ + ..+...|++|||||..+.+. .|..-|++++... ||
T Consensus 326 ~HSl~VA~lA~~L----A~~lGl-----------d---~d~a~~AGLLHDIGK~ie~e~~~~H~~iGaeLlkk~----~~ 383 (508)
T PRK12705 326 SHSLEVAHLAGII----AAEIGL-----------D---PALAKRAGLLHDIGKSIDRESDGNHVEIGAELARKF----NE 383 (508)
T ss_pred HHHHHHHHHHHHH----HHHcCc-----------C---HHHHHHHHHHHHcCCcchhhhcccHHHHHHHHHHhc----CC
Confidence 5999999999875 333343 2 24567899999999998765 4556688888654 45
Q ss_pred CHHHHHHHHHHHHhccCCCCCCCchhhcCCChHHHHHHHHHHHHHHHHHHhccccCCC
Q 008124 438 STDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDCVN 495 (577)
Q Consensus 438 s~~E~~~iA~i~~yhrk~~~~~~~~~~~~l~~~~~~~v~kL~~iLRlA~~Ld~s~~~~ 495 (577)
++ .+...+.+|....... ...+.|+.+|++|+..+.+.
T Consensus 384 p~----~Vv~aI~~HHe~~~~~----------------~~~a~IVaiADaLSaaRpGa 421 (508)
T PRK12705 384 PD----EVINAIASHHNKVNPE----------------TVYSVLVQIADALSAARPGA 421 (508)
T ss_pred CH----HHHHHHHHhCCCCCCC----------------CHHHHHHHHHHHHcCCCCCC
Confidence 44 2455666665433221 13567889999998877554
No 36
>PRK12704 phosphodiesterase; Provisional
Probab=96.12 E-value=0.027 Score=62.76 Aligned_cols=93 Identities=13% Similarity=0.065 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCC---CCchhhhHHHHHcCCCCCCC
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK---KGYHKQSCHIIMNGDHLYGY 437 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~---~~h~~Hs~yiI~ns~~l~G~ 437 (577)
.|+..|+.+|..| +...|+ + ...+..|++|||||+..++ .+|...++.++...+ +
T Consensus 338 ~Hs~~Va~lA~~l----A~~lgl-----------d---~~~a~~AgLLHDIGK~~~~e~~~~H~~iGa~il~~~~----~ 395 (520)
T PRK12704 338 QHSIEVAHLAGLM----AAELGL-----------D---VKLAKRAGLLHDIGKALDHEVEGSHVEIGAELAKKYK----E 395 (520)
T ss_pred HHHHHHHHHHHHH----HHHhCc-----------C---HHHHHHHHHHHccCcCccccccCCHHHHHHHHHHHcC----C
Confidence 5999999999875 333443 1 2457799999999998765 467788888887553 3
Q ss_pred CHHHHHHHHHHHHhccCCCCCCCchhhcCCChHHHHHHHHHHHHHHHHHHhccccCCC
Q 008124 438 STDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDCVN 495 (577)
Q Consensus 438 s~~E~~~iA~i~~yhrk~~~~~~~~~~~~l~~~~~~~v~kL~~iLRlA~~Ld~s~~~~ 495 (577)
+ ..+..++.+|....+. . ..++.|+.+|++|+..+.+.
T Consensus 396 ~----~~v~~aI~~HHe~~~~--------~--------~~~a~IV~~ADaLsa~Rpga 433 (520)
T PRK12704 396 S----PVVINAIAAHHGDEEP--------T--------SIEAVLVAAADAISAARPGA 433 (520)
T ss_pred C----HHHHHHHHHcCCCCCC--------C--------CHHHHHHHHHHHHhCcCCCC
Confidence 3 3466677777643211 0 12677888999998877543
No 37
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=96.01 E-value=0.015 Score=61.52 Aligned_cols=93 Identities=19% Similarity=0.142 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCC--------------------CCc
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK--------------------KGY 420 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~--------------------~~h 420 (577)
.|+..|+.+|..|= ..+++ ++ ..+.+|++|||||+...+ ..|
T Consensus 199 ~HSl~VA~~A~~LA----~~~g~-----------d~---~~a~~AGLLHDIGK~~~~~~~~~~~~~~~~~~~~~~~~~~H 260 (342)
T PRK07152 199 KHCLRVAQLAAELA----KKNNL-----------DP---KKAYYAGLYHDITKEWDEEKHRKFLKKYLKDVKNLPWYVLH 260 (342)
T ss_pred HHHHHHHHHHHHHH----HHhCc-----------CH---HHHHHHHHHHHhhccCCHHHHHHHHHhcCCchhhcchHHHh
Confidence 89999999999863 33332 22 568899999999996532 236
Q ss_pred hhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhcCCChHHHHHHHHHHHHHHHHHHhccccC
Q 008124 421 HKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDC 493 (577)
Q Consensus 421 ~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhrk~~~~~~~~~~~~l~~~~~~~v~kL~~iLRlA~~Ld~s~~ 493 (577)
..-|++++.+. .||+..+ ++..++||..... .+..++.|+.+|+.++..|.
T Consensus 261 ~~~Ga~ll~~~---~~~p~~~---i~~aI~~Hh~~~~----------------~~~~l~~iV~lAD~l~~~R~ 311 (342)
T PRK07152 261 QYVGALWLKHV---YGIDDEE---ILNAIRNHTSLAE----------------EMSTLDKIVYVADKIEPGRK 311 (342)
T ss_pred HHHHHHHHHHH---cCCCcHH---HHHHHHhccCCCC----------------CcCHHHHHHHhhhhcccCCC
Confidence 66677766543 4555433 5556677763211 12448899999999998664
No 38
>PRK00106 hypothetical protein; Provisional
Probab=95.93 E-value=0.055 Score=60.10 Aligned_cols=93 Identities=11% Similarity=0.040 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCC---CchhhhHHHHHcCCCCCCC
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---GYHKQSCHIIMNGDHLYGY 437 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~~---~h~~Hs~yiI~ns~~l~G~ 437 (577)
.|+-.|+.+|..| +..+|+. ..++..|++|||||+.+.+. +|..-++.++... |+
T Consensus 353 ~HSv~VA~lA~~l----A~~lgld--------------~e~a~~AGLLHDIGK~v~~e~~g~Ha~iGa~ll~~~----~~ 410 (535)
T PRK00106 353 RHSVEVGKLAGIL----AGELGEN--------------VALARRAGFLHDMGKAIDREVEGSHVEIGMEFARKY----KE 410 (535)
T ss_pred HHHHHHHHHHHHH----HHHhCCC--------------HHHHHHHHHHHhccCccCccccCChHHHHHHHHHHc----CC
Confidence 7999999998864 4454431 25799999999999998764 4777788888544 34
Q ss_pred CHHHHHHHHHHHHhccCCCCCCCchhhcCCChHHHHHHHHHHHHHHHHHHhccccCCC
Q 008124 438 STDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDCVN 495 (577)
Q Consensus 438 s~~E~~~iA~i~~yhrk~~~~~~~~~~~~l~~~~~~~v~kL~~iLRlA~~Ld~s~~~~ 495 (577)
++. +...+.+|....+.. ..++.++.+|+.|+..+.+.
T Consensus 411 ~~~----v~~aI~~HH~~~~~~----------------s~~a~IV~~AD~lsa~Rpga 448 (535)
T PRK00106 411 HPV----VVNTIASHHGDVEPE----------------SVIAVIVAAADALSSARPGA 448 (535)
T ss_pred CHH----HHHHHHHhCCCCCCC----------------ChHHHHHHHHHHhccCCCCC
Confidence 442 455556665433221 13688899999998887554
No 39
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=95.92 E-value=0.01 Score=57.59 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=49.2
Q ss_pred cccchhHHHHHHHHHHHHHHHhhcccccchhhhhhccc-Ccc-hHHHHHHHHHHhhcccccCCCCchhhhHHHHH
Q 008124 357 KKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASF-EDK-DLEYLEAACLLHNIGHFTSKKGYHKQSCHIIM 429 (577)
Q Consensus 357 d~~~~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~-~~~-~r~LL~~Aa~LHdIG~~I~~~~h~~Hs~yiI~ 429 (577)
|-...|+.-|+.-|+.+|+.|... |..+.. +.+.. +.+ ..-+.-.+|+|||||..++.++|+.||+++-+
T Consensus 56 DHG~vHa~Iva~~Al~i~~lL~~~-Gv~ps~--v~dg~gd~eD~~vivlLga~LHDIGnsVHRd~H~~~sa~La~ 127 (269)
T COG3294 56 DHGPVHARIVANSALAIYKLLLEK-GVKPSG--VTDGVGDEEDSPVIVLLGAYLHDIGNSVHRDDHELYSAVLAL 127 (269)
T ss_pred CCCceeeeeccchHHHHHHHHHhc-CCCccc--ccccCCchhhhhHHHHHHHHHHhccchhccccHHHHhHHHhH
Confidence 444479999999999999999754 222211 00111 112 22567789999999999999999999998753
No 40
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=95.47 E-value=0.025 Score=53.37 Aligned_cols=85 Identities=20% Similarity=0.162 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHH---HHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccC----------------CCCch
Q 008124 361 KAGAQCASIAKDIF---EGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTS----------------KKGYH 421 (577)
Q Consensus 361 ~ha~~V~~~a~~LF---d~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~----------------~~~h~ 421 (577)
.|...|+.+|..|. ..+.... +.+.+.++.+||+|||||+.-. ..+|.
T Consensus 3 ~H~~~v~~~a~~l~~~~~~~~~~~-------------~~~~~~~~~~~~~lHDiGK~~~~FQ~~~~~~~~~~~~~~~~H~ 69 (177)
T TIGR01596 3 EHLLDVAAVAEKLKNLDIVIADLI-------------GKLLRELLDLLALLHDIGKINPGFQAKLMKAYKRGRRVASRHS 69 (177)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHH-------------hhHHHHHHHHHHHHccCccCCHHHHHHhhcccccccCCCCCHH
Confidence 58888888887764 1222221 2235789999999999999632 24466
Q ss_pred hhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCC
Q 008124 422 KQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPR 458 (577)
Q Consensus 422 ~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhrk~~~~ 458 (577)
.-|.+++...-.-.|+......+++.++.+|.+..+.
T Consensus 70 ~~s~~~~~~~~~~~~~~~~~~~~~~~~I~~HHg~~~~ 106 (177)
T TIGR01596 70 LLSAKLLDALLIKKGYEEEVFKLLALAVIGHHGGLSN 106 (177)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCchh
Confidence 6677766432102567778888899988888877653
No 41
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=95.43 E-value=0.056 Score=50.54 Aligned_cols=93 Identities=19% Similarity=0.205 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCC----------------------
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---------------------- 418 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~~---------------------- 418 (577)
.|+..|+.+|..|= ..+++ ++ ....+|++|||||+...+.
T Consensus 11 ~Hsl~Va~~a~~lA----~~~~~-----------d~---e~a~~AGLLHDIGk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (158)
T TIGR00488 11 QHCLGVGQTAKQLA----EANKL-----------DS---KKAEIAGAYHDLAKFLPKEQLKQIAKREKMPAHLLYPSPKL 72 (158)
T ss_pred HHHHHHHHHHHHHH----HHhCc-----------CH---HHHHHHHHHHHHhccCCHHHHHHHHHHcCCCchhhcccccc
Confidence 79999999999753 33332 11 3588999999999864321
Q ss_pred CchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhcCCChHHHHHHHHHHHHHHHHHHhccccC
Q 008124 419 GYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDC 493 (577)
Q Consensus 419 ~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhrk~~~~~~~~~~~~l~~~~~~~v~kL~~iLRlA~~Ld~s~~ 493 (577)
.|..=+++++.+ +.||.++ .+...++||... . .. ...|+.++.+|+.++..+.
T Consensus 73 ~H~~vGa~ll~~---w~~~~~~---~i~~aI~~H~~~--~-----------~~---~~~l~~iV~lAD~i~~~~~ 125 (158)
T TIGR00488 73 LHAYVGAYILKR---EFGVQDE---DILDAIRNHTSG--P-----------PG---MSLLDMIIYVADKLEPNRG 125 (158)
T ss_pred cHHHHHHHHHHH---HhCCCcH---HHHHHHHHhCCC--C-----------CC---CCHHHHHHHhHHHHhhccc
Confidence 144445555432 3344332 233445555421 1 00 1248899999999987663
No 42
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=95.42 E-value=0.16 Score=54.24 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=61.9
Q ss_pred cCCCcccEEEEeehhhh-hcCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEE
Q 008124 82 HNISRDHTRAVATAAVR-AAENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (577)
Q Consensus 82 ~~v~~~~i~~vATsA~R-~A~N~~~fl~~i~~~tGl~-i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~ 159 (577)
+++++....++-|...- ....++.+.+.+.+..|++ +-++ .++.+..+|.- ...++|+|||+|+|.++.
T Consensus 89 l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~---~~~~~a~~~~g------~~~~lVVDiG~~~t~v~p 159 (373)
T smart00268 89 LRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIA---IQAVLSLYASG------RTTGLVIDSGDGVTHVVP 159 (373)
T ss_pred cCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEe---ccHHHHHHhCC------CCEEEEEecCCCcceEEE
Confidence 45554445556664432 2344566777777777776 3334 34455544421 345899999999999999
Q ss_pred eeCCeEEEE--EEEehhHHHHHHhhc
Q 008124 160 GKRGKVVFC--ESVNLGHVSLSEKFG 183 (577)
Q Consensus 160 ~~~~~~~~~--~SlplG~vrl~e~f~ 183 (577)
+.+|.+... ..+|+|.-.+++.+.
T Consensus 160 v~~G~~~~~~~~~~~~GG~~l~~~l~ 185 (373)
T smart00268 160 VVDGYVLPHAIKRIDIAGRDLTDYLK 185 (373)
T ss_pred EECCEEchhhheeccCcHHHHHHHHH
Confidence 999988755 778999988887653
No 43
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=95.39 E-value=0.12 Score=53.28 Aligned_cols=73 Identities=25% Similarity=0.244 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHH
Q 008124 104 DEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSE 180 (577)
Q Consensus 104 ~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e 180 (577)
.++.+..+.+-.-++-+|.. ..-...|+-.....+. ..+++|||||+||+.+..-+.+..+.|+.+|.=.+-+
T Consensus 118 rAi~ea~~~aGa~~V~lieE---p~aAAIGaglpi~ep~-G~mvvDIGgGTTevaVISlggiv~~~Sirv~GD~~De 190 (342)
T COG1077 118 RAIKEAAESAGAREVYLIEE---PMAAAIGAGLPIMEPT-GSMVVDIGGGTTEVAVISLGGIVSSSSVRVGGDKMDE 190 (342)
T ss_pred HHHHHHHHhccCceEEEecc---HHHHHhcCCCcccCCC-CCEEEEeCCCceeEEEEEecCEEEEeeEEEecchhhH
Confidence 34677777766667777754 4444555443332222 3699999999999999999999999999999755544
No 44
>PRK10119 putative hydrolase; Provisional
Probab=95.29 E-value=0.12 Score=51.45 Aligned_cols=97 Identities=10% Similarity=0.089 Sum_probs=59.8
Q ss_pred cchhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccc-cCCCC---chhhhHHHHH---cC
Q 008124 359 RVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF-TSKKG---YHKQSCHIIM---NG 431 (577)
Q Consensus 359 ~~~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~-I~~~~---h~~Hs~yiI~---ns 431 (577)
+..|..+|.++|.+|- ...+ .+..++.+||+|||||-. -+... +...+...+. ..
T Consensus 26 D~~Hi~RV~~lA~~Ia----~~e~--------------~D~~vv~lAAlLHDv~d~~k~~~~~~~~~~~~a~~a~~~L~~ 87 (231)
T PRK10119 26 DICHFRRVWATAQKLA----ADDD--------------VDMLVVLTACYFHDIVSLAKNHPQRHRSSILAAEETRRILRE 87 (231)
T ss_pred ChHHHHHHHHHHHHHH----HhcC--------------CCHHHHHHHHHHhhcchhhhcCccccchhhHHHHHHHHHHHH
Confidence 3489999999999872 2111 245789999999999741 22211 1223443332 33
Q ss_pred CCCCCCCHHHHHHHHHHHHhccCCCCC-CCchhhcCCChHHHHH
Q 008124 432 DHLYGYSTDEIKLIALLTRFHRKKFPR-SHHAFLEEFPEQAKQK 474 (577)
Q Consensus 432 ~~l~G~s~~E~~~iA~i~~yhrk~~~~-~~~~~~~~l~~~~~~~ 474 (577)
. ..||+......|..++..|+-+... ........+.+.||.-
T Consensus 88 ~-~~g~~~~~i~~V~~iI~~~sfs~~~~p~tlE~kIVQDADRLD 130 (231)
T PRK10119 88 D-FPDFPAEKIEAVCHAIEAHSFSAQIAPLTLEAKIVQDADRLE 130 (231)
T ss_pred c-ccCcCHHHHHHHHHHHHHcCCCCCCCCCCHHHhhhhhHHHHH
Confidence 1 2799999999999999888754321 1123344566666543
No 45
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=95.17 E-value=0.023 Score=65.12 Aligned_cols=54 Identities=15% Similarity=0.229 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhcc
Q 008124 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (577)
Q Consensus 399 r~LL~~Aa~LHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhr 453 (577)
+.+|.+||+|||||+-.. .+|.+-++.+...--.=+||+++++..+..+++||-
T Consensus 402 ~~lL~LAALlHDIGKg~g-~dHs~~GA~~A~~i~~RLgl~~~~~e~V~~LV~~HL 455 (693)
T PRK00227 402 PDLLLLGALYHDIGKGYP-RPHEQVGAEMVARAARRMGLNLRDRAVVQTLVAEHT 455 (693)
T ss_pred cHHHHHHHHHHhhcCCCC-CChhHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHhc
Confidence 368899999999999874 479999998886543358999999999999999994
No 46
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=95.08 E-value=0.32 Score=50.06 Aligned_cols=154 Identities=21% Similarity=0.270 Sum_probs=91.2
Q ss_pred EEEEEecccceEEEEEEEeC----CC----CEEEEEe---eeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcC
Q 008124 15 FASIDMGTSSFKLLIIRAYP----NG----KFLTIDT---LKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHN 83 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~----~~----~~~~l~~---~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~ 83 (577)
-..||||+.+..+...++.- .+ +++++++ ++.++ +---+.+.|.|.+.+++..+ +++|+. -|
T Consensus 7 SVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~kdi~~rS~i-~FTPv~~q~~id~~alk~~v--~eeY~~----AG 79 (473)
T COG4819 7 SVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIKKDISWRSPI-FFTPVDKQGGIDEAALKKLV--LEEYQA----AG 79 (473)
T ss_pred eeeeeccCceeeeeeeeeEEeecccccccceEEEEecceeeecce-eeeeecccCCccHHHHHHHH--HHHHHH----cC
Confidence 36899999998877665531 11 2333322 22222 22234556888888877654 456654 26
Q ss_pred CCcccEE---EEeehhhhhcCChHHHHHHHHHHcCCcEEEeCh-HHHHHHHHhhhh-ccCCC-CCCceEEEEeCCCceEE
Q 008124 84 ISRDHTR---AVATAAVRAAENKDEFVECVREKVGFEVDVLTG-EQEAKFVYMGVL-QFLPV-FDRLVLSVDIGGGSTEF 157 (577)
Q Consensus 84 v~~~~i~---~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg-~eEA~l~~~gv~-~~~~~-~~~~~lviDIGGGStEl 157 (577)
+.++.|- ++-|----.-+|+...+..+..-.|==|----| .-|.-..=.|.- +++.. .....+=+|||||.|.+
T Consensus 80 i~pesi~sGAvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~ 159 (473)
T COG4819 80 IAPESIDSGAVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNY 159 (473)
T ss_pred CChhccccccEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccce
Confidence 6554331 122322233478888888887777633322222 234333333332 23321 12346889999999999
Q ss_pred EEeeCCeEEEEEEEehhH
Q 008124 158 VIGKRGKVVFCESVNLGH 175 (577)
Q Consensus 158 ~~~~~~~~~~~~SlplG~ 175 (577)
++|+.|++.....|.+|.
T Consensus 160 slFD~Gkv~dTaCLdiGG 177 (473)
T COG4819 160 SLFDAGKVSDTACLDIGG 177 (473)
T ss_pred eeecccccccceeeecCc
Confidence 999999999999998886
No 47
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=95.04 E-value=0.21 Score=53.31 Aligned_cols=91 Identities=18% Similarity=0.151 Sum_probs=57.6
Q ss_pred CCcccEEEEeehhhhh-cCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEee
Q 008124 84 ISRDHTRAVATAAVRA-AENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGK 161 (577)
Q Consensus 84 v~~~~i~~vATsA~R~-A~N~~~fl~~i~~~tGl~-i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~ 161 (577)
+++....++-|...-. -..++.+.+.+.+..|++ +-+++..- ++.++. + ...++|+|||+|+|.++.+.
T Consensus 91 ~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~---~a~~~~--g----~~~~lVVDiG~~~t~i~pv~ 161 (371)
T cd00012 91 VNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAV---LSLYAS--G----RTTGLVVDSGDGVTHVVPVY 161 (371)
T ss_pred CCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHH---HHHHhc--C----CCeEEEEECCCCeeEEEEEE
Confidence 3333344454443322 234556677777777765 44444433 333331 1 24589999999999999999
Q ss_pred CCeEEEE--EEEehhHHHHHHhhc
Q 008124 162 RGKVVFC--ESVNLGHVSLSEKFG 183 (577)
Q Consensus 162 ~~~~~~~--~SlplG~vrl~e~f~ 183 (577)
+|.+... ..+++|.-.+++.+.
T Consensus 162 ~G~~~~~~~~~~~~GG~~l~~~l~ 185 (371)
T cd00012 162 DGYVLPHAIKRLDLAGRDLTRYLK 185 (371)
T ss_pred CCEEchhhheeccccHHHHHHHHH
Confidence 9988753 788999988887653
No 48
>PRK03381 PII uridylyl-transferase; Provisional
Probab=94.94 E-value=0.028 Score=65.85 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhcc
Q 008124 400 EYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (577)
Q Consensus 400 ~LL~~Aa~LHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhr 453 (577)
.+|.+||+|||||+-... +|.+-|+.+...--.=+||+.++...++.+++||-
T Consensus 443 ~lL~lAaLlHDiGKg~~~-~Hs~~Ga~~a~~i~~RL~l~~~~~~~v~~LV~~Hl 495 (774)
T PRK03381 443 DLLLLGALLHDIGKGRGG-DHSVVGAELARQIGARLGLSPADVALLSALVRHHL 495 (774)
T ss_pred HHHHHHHHHHhhcCCCCC-ChHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHhh
Confidence 578999999999997654 78888888876543358999999999999999994
No 49
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=94.92 E-value=0.081 Score=53.29 Aligned_cols=86 Identities=26% Similarity=0.322 Sum_probs=53.8
Q ss_pred EEeehhhhhcCC--hHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEE
Q 008124 91 AVATAAVRAAEN--KDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (577)
Q Consensus 91 ~vATsA~R~A~N--~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~ 168 (577)
+|+-+|+-++.. -+.+.+.+++++|.+++|-.-| |-...+|++.+- -.+.+..++|+|||||.=++.+.+.-+.+
T Consensus 83 AVgiAAMVkt~~l~M~~iA~~l~~~lgv~V~igGvE--AemAi~GALTTP-Gt~~PlaIlDmG~GSTDAsii~~~g~v~~ 159 (332)
T PF08841_consen 83 AVGIAAMVKTDKLQMQMIADELEEELGVPVEIGGVE--AEMAILGALTTP-GTDKPLAILDMGGGSTDASIINRDGEVTA 159 (332)
T ss_dssp EEEEEEEEE-SS-TCHHHHHHHHHHHTSEEEEECEH--HHHHHHHHTTST-T--SSEEEEEE-SSEEEEEEE-TTS-EEE
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHCCceEEcccc--HHHHHhcccCCC-CCCCCeEEEecCCCcccHHHhCCCCcEEE
Confidence 345555655543 3567999999999999997765 445667877543 33566899999999999777665544444
Q ss_pred EEEehhHHHHHH
Q 008124 169 ESVNLGHVSLSE 180 (577)
Q Consensus 169 ~SlplG~vrl~e 180 (577)
..+ -|+-.+--
T Consensus 160 iHl-AGAG~mVT 170 (332)
T PF08841_consen 160 IHL-AGAGNMVT 170 (332)
T ss_dssp EEE-E-SHHHHH
T ss_pred EEe-cCCchhhH
Confidence 444 35444433
No 50
>PTZ00280 Actin-related protein 3; Provisional
Probab=94.83 E-value=0.48 Score=51.44 Aligned_cols=91 Identities=13% Similarity=0.056 Sum_probs=57.2
Q ss_pred EeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCC-CCCceEEEEeCCCceEEEEeeCCeEEEE-
Q 008124 92 VATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPV-FDRLVLSVDIGGGSTEFVIGKRGKVVFC- 168 (577)
Q Consensus 92 vATsA~R~A~N~~~fl~~i~~~tGl~i-~VIsg~eEA~l~~~gv~~~~~~-~~~~~lviDIGGGStEl~~~~~~~~~~~- 168 (577)
+....+--..+++.+.+-+.+..+++- -+....-=+.|++......-.. ....++|+|+|.|+|.++-+-+|.+...
T Consensus 107 lte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~ 186 (414)
T PTZ00280 107 LTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSS 186 (414)
T ss_pred EeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEEcccc
Confidence 333444455677888888888888774 3333333333332110110000 2345899999999999999988887643
Q ss_pred -EEEehhHHHHHHhh
Q 008124 169 -ESVNLGHVSLSEKF 182 (577)
Q Consensus 169 -~SlplG~vrl~e~f 182 (577)
..+++|.-.+++.+
T Consensus 187 ~~~~~~GG~~lt~~L 201 (414)
T PTZ00280 187 IKHIPLAGRDITNFI 201 (414)
T ss_pred eEEecCcHHHHHHHH
Confidence 56789988777754
No 51
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=94.64 E-value=0.053 Score=58.76 Aligned_cols=65 Identities=18% Similarity=0.405 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHH
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTD 440 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~ 440 (577)
+|+-=|..+|..+++.|..... . .+++.++.++++||+|||||.. -.-|++..+.+.+ .++.|+
T Consensus 54 eHSLGV~~la~~~~~~l~~~~~--~-------~~~~~~~~~~~~AALLHDIGHg-----PFSH~fE~~~~~~--~~~~He 117 (421)
T COG1078 54 EHSLGVYHLARRLLEHLEKNSE--E-------EIDEEERLLVRLAALLHDIGHG-----PFSHTFEYVLDKN--LGFYHE 117 (421)
T ss_pred chhhHHHHHHHHHHHHHhhccc--c-------ccchHHHHHHHHHHHHHccCCC-----ccccchHHHhccc--ccccHH
Confidence 6888999999999998875432 1 3456778899999999999953 3445666555553 444443
Q ss_pred H
Q 008124 441 E 441 (577)
Q Consensus 441 E 441 (577)
+
T Consensus 118 ~ 118 (421)
T COG1078 118 D 118 (421)
T ss_pred H
Confidence 3
No 52
>PTZ00004 actin-2; Provisional
Probab=94.19 E-value=1.1 Score=47.95 Aligned_cols=154 Identities=13% Similarity=0.107 Sum_probs=89.7
Q ss_pred EEEEEecccceEEEEEEEeCCC-C-EEEEEeee----------eeeeeccCC------------CcCCCCC-HHHHHHHH
Q 008124 15 FASIDMGTSSFKLLIIRAYPNG-K-FLTIDTLK----------QPVILGRDL------------SSSCSIS-TQSQARSV 69 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~~~-~-~~~l~~~k----------~~vrLg~~~------------~~~g~Ls-~e~i~r~~ 69 (577)
.-|||+||.++|.-.+.-+... . ...+-+.+ ..+-+|+.. .++|.+. .++++..+
T Consensus 8 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~~e~i~ 87 (378)
T PTZ00004 8 AAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDDMEKIW 87 (378)
T ss_pred eEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCHHHHHHHH
Confidence 4799999999998876321100 0 11121111 112234331 2334443 46666555
Q ss_pred HHHHHHHHHHHHcCCCcccEEEEeehh-hhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEE
Q 008124 70 ESLLMFRDIIQSHNISRDHTRAVATAA-VRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLS 147 (577)
Q Consensus 70 ~~L~~f~~~~~~~~v~~~~i~~vATsA-~R~A~N~~~fl~~i~~~tGl~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~lv 147 (577)
+-+ |. +..++++....++-|.. +--..+++.+.+.+.+..|++- -+.+. +.++.++. ....++|
T Consensus 88 ~~~--~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~---~~ls~ya~------g~~tglV 153 (378)
T PTZ00004 88 HHT--FY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQ---AVLSLYAS------GRTTGIV 153 (378)
T ss_pred HHH--HH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeecc---HHHHHHhc------CCceEEE
Confidence 531 22 23355544445566654 3334566778888888888873 33333 44444432 1245899
Q ss_pred EEeCCCceEEEEeeCCeEE--EEEEEehhHHHHHHhh
Q 008124 148 VDIGGGSTEFVIGKRGKVV--FCESVNLGHVSLSEKF 182 (577)
Q Consensus 148 iDIGGGStEl~~~~~~~~~--~~~SlplG~vrl~e~f 182 (577)
+|+|.++|.++-+.+|.+. ....+++|.-.+++.+
T Consensus 154 VDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L 190 (378)
T PTZ00004 154 LDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYM 190 (378)
T ss_pred EECCCCcEEEEEEECCEEeecceeeecccHHHHHHHH
Confidence 9999999999999998876 4466788887777654
No 53
>PRK05007 PII uridylyl-transferase; Provisional
Probab=94.04 E-value=0.067 Score=63.61 Aligned_cols=55 Identities=25% Similarity=0.237 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccC
Q 008124 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (577)
Q Consensus 399 r~LL~~Aa~LHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhrk 454 (577)
+.+|.+||+|||||+-.. .+|.+-|+.+...--.-.||+++++..++.++++|-.
T Consensus 498 ~~lL~lAaLlHDIGKg~~-~dHs~~Ga~~a~~il~rl~l~~~~~~~v~~LV~~Hl~ 552 (884)
T PRK05007 498 KELLLLAALFHDIAKGRG-GDHSILGAQDALEFAELHGLNSRETQLVAWLVRNHLL 552 (884)
T ss_pred hhHHHHHHHHHhhcCCCC-CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 468999999999999764 4788888887754433589999999999999999954
No 54
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=94.03 E-value=0.13 Score=53.77 Aligned_cols=108 Identities=14% Similarity=0.276 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCC------ch-hhhHHHHHcCCC
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKG------YH-KQSCHIIMNGDH 433 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~~~------h~-~Hs~yiI~ns~~ 433 (577)
+|..+|+.++..+ +...| +++++-+++..||.|||||+--=|++ +- -+-+-+....+
T Consensus 188 ~H~~Rv~~~~~~l----Ae~lg-----------Lse~~v~~i~~AapLHDIGKvaiPD~ILlKpg~Lt~ee~~imk~H~- 251 (360)
T COG3437 188 DHLERVAQYSELL----AELLG-----------LSEEEVDLIKKAAPLHDIGKVAIPDSILLKPGKLTSEEFEIMKGHP- 251 (360)
T ss_pred hHHHHHHHHHHHH----HHHhC-----------CCHHHHHHHHhccchhhcccccCChHHhcCCCCCCHHHHHHHhcch-
Confidence 6888888888764 44444 46677799999999999998543321 11 12222223332
Q ss_pred CCCC---CHHH--HHHHHHHHHhccCCCCCCCchhhcCCChHHHHHHHHHHHHHHHHHHhc
Q 008124 434 LYGY---STDE--IKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQ 489 (577)
Q Consensus 434 l~G~---s~~E--~~~iA~i~~yhrk~~~~~~~~~~~~l~~~~~~~v~kL~~iLRlA~~Ld 489 (577)
..|. ..-+ .+..|.||++|.-..... .+..-|..++... .|.|+.+|+.+|
T Consensus 252 ~~G~~il~~s~~~mq~a~eIa~~HHErwDGs--GYPdgLkGd~IPl---~arI~aiADvfD 307 (360)
T COG3437 252 ILGAEILKSSERLMQVAAEIARHHHERWDGS--GYPDGLKGDEIPL---SARIVAIADVFD 307 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCC--CCCCCCCccccch---hHHHHHHHHHHH
Confidence 4443 2223 466777999997666542 2334566666555 445555555554
No 55
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=93.92 E-value=0.27 Score=49.08 Aligned_cols=80 Identities=14% Similarity=0.283 Sum_probs=48.1
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEe
Q 008124 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (577)
Q Consensus 14 ~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (577)
++.+|||||.|+|..+++ .+|++ +...+.+......-......+++.+-+.+ ..-++++++.++++..+|.+|+
T Consensus 1 y~lgiDiGTts~K~~l~d--~~g~i--v~~~~~~~~~~~~~~g~~e~d~~~~~~~~--~~~~~~~~~~~~~~~~~I~aI~ 74 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFD--EDGKI--VASASRPYPYYTPEPGWAEQDPDEIWEAI--CEALKELLSQAGIDPEQIKAIG 74 (245)
T ss_dssp EEEEEEECSSEEEEEEEE--TTSCE--EEEEEEEETEBCSSTTEEEE-HHHHHHHH--HHHHHHHHHHCTSCGGGEEEEE
T ss_pred CEEEEEEcccceEEEEEe--CCCCE--EEEEEEeeeeccccccccccChHHHHHHH--HHHHHHHHhhcCcccceeEEEE
Confidence 367999999999999998 35654 44444443333221111234554444333 2334556666678778999999
Q ss_pred ehhhhh
Q 008124 94 TAAVRA 99 (577)
Q Consensus 94 TsA~R~ 99 (577)
.++.+.
T Consensus 75 is~~~~ 80 (245)
T PF00370_consen 75 ISGQGH 80 (245)
T ss_dssp EEE-SS
T ss_pred eccccC
Confidence 877654
No 56
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=93.87 E-value=0.071 Score=58.86 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhcccc----------cCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccC
Q 008124 400 EYLEAACLLHNIGHF----------TSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (577)
Q Consensus 400 ~LL~~Aa~LHdIG~~----------I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhrk 454 (577)
.+|.+||+|||||+. +++++|.+-|+.+...--.=++||.+++..+..+++||-.
T Consensus 280 ~~l~lAaLLHDiGK~~t~~~~~~g~~~f~gH~~~Ga~~a~~iL~rLk~s~~~~~~V~~LV~~H~~ 344 (466)
T TIGR02692 280 LVLRWAALLHDIGKPATRRFEPDGRVSFHHHEVVGAKMVRKRMRALKYSKQMVEDVSRLVELHLR 344 (466)
T ss_pred HHHHHHHHHhhccCCCCcccccCCCcccCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc
Confidence 479999999999976 3667788888887654322479999999999999999953
No 57
>PRK04374 PII uridylyl-transferase; Provisional
Probab=93.65 E-value=0.079 Score=62.72 Aligned_cols=53 Identities=19% Similarity=0.066 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhcc
Q 008124 400 EYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (577)
Q Consensus 400 ~LL~~Aa~LHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhr 453 (577)
.+|.+|++|||||+-.. .+|.+-|+.+...--.=+||+.++...++.++++|-
T Consensus 487 ~lL~lAaLlHDIGKg~~-~dHs~~Ga~~a~~i~~Rl~l~~~~~~~v~~LV~~Hl 539 (869)
T PRK04374 487 ELLLLAGLFHDIAKGRG-GDHSELGAVDARAFCLAHRLSEGDTELVTWLVEQHL 539 (869)
T ss_pred cHHHHHHHHHhccCCCC-CChHHHhHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 48999999999999874 478888888875543357999999999999999994
No 58
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=93.64 E-value=0.071 Score=63.41 Aligned_cols=52 Identities=19% Similarity=0.085 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhc
Q 008124 400 EYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFH 452 (577)
Q Consensus 400 ~LL~~Aa~LHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yh 452 (577)
.+|.+|++|||||+-.. .+|.+-|+.+...--.=+||+.++...++.++++|
T Consensus 498 ~lL~lAaLlHDIGKg~~-~~Hs~~Ga~~a~~i~~rl~l~~~~~~~v~~LV~~H 549 (895)
T PRK00275 498 ELLYIAGLYHDIGKGRG-GDHSELGAVDAEAFCQRHQLPAWDTRLVVWLVENH 549 (895)
T ss_pred HHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 58999999999999874 47889998887654335899999999999999999
No 59
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.52 E-value=0.092 Score=62.22 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccC
Q 008124 398 DLEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (577)
Q Consensus 398 ~r~LL~~Aa~LHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhrk 454 (577)
.+.+|.+||+|||||+--.. +|.+-|+.+...--.=+||+.++...++.+++||-.
T Consensus 472 ~~~~L~lAaLlHDIGKG~~~-dHs~~Ga~~a~~i~~rl~l~~~~~~~v~~LV~~Hl~ 527 (854)
T PRK01759 472 DRTLLYIAALFHDIAKGRGG-DHAELGAVDMRQFAQQHGFDQREIETMAWLVQQHLL 527 (854)
T ss_pred CHHHHHHHHHHHhhcCCCCC-ChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhH
Confidence 35689999999999997654 788888888765433589999999999999999953
No 60
>PRK03059 PII uridylyl-transferase; Provisional
Probab=93.39 E-value=0.11 Score=61.68 Aligned_cols=54 Identities=17% Similarity=0.103 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhcc
Q 008124 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (577)
Q Consensus 399 r~LL~~Aa~LHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhr 453 (577)
+.+|.+||+|||||+--. .+|.+-|+.+...--.=.||+.++...++.++++|-
T Consensus 477 ~~lL~LAaLlHDIGKg~~-~~Hs~~GA~~A~~il~rl~l~~~~~~~V~~LV~~Hl 530 (856)
T PRK03059 477 PWLLYVAALFHDIAKGRG-GDHSTLGAVDARRFCRQHGLAREDAELVVWLVEHHL 530 (856)
T ss_pred hhHHHHHHHHHhhccCCC-CCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 578999999999999754 478888887775532247999999999999999995
No 61
>PRK05092 PII uridylyl-transferase; Provisional
Probab=93.13 E-value=0.13 Score=61.66 Aligned_cols=54 Identities=24% Similarity=0.178 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhcc
Q 008124 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (577)
Q Consensus 399 r~LL~~Aa~LHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhr 453 (577)
+.+|.+||+|||||+-- ..+|.+-|+.+...--.=+||+.+++..++.+++||-
T Consensus 530 ~~~L~lAaLlHDIGKg~-~~dHs~~Ga~~a~~~~~rl~l~~~~~~~v~~LV~~Hl 583 (931)
T PRK05092 530 RRALYVAVLLHDIAKGR-PEDHSIAGARIARRLCPRLGLSPAETETVAWLVEHHL 583 (931)
T ss_pred HHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 56899999999999965 4578888888876543358999999999999999994
No 62
>PTZ00466 actin-like protein; Provisional
Probab=93.00 E-value=2 Score=46.13 Aligned_cols=155 Identities=14% Similarity=0.085 Sum_probs=89.5
Q ss_pred eEEEEEecccceEEEEEEEeCCC-C-EEEEEeeee----------eeeeccCC------------CcCCCCC-HHHHHHH
Q 008124 14 LFASIDMGTSSFKLLIIRAYPNG-K-FLTIDTLKQ----------PVILGRDL------------SSSCSIS-TQSQARS 68 (577)
Q Consensus 14 ~~AvIDIGSNSirL~I~~~~~~~-~-~~~l~~~k~----------~vrLg~~~------------~~~g~Ls-~e~i~r~ 68 (577)
..-|||+||.++|.=.+.-+... . ..++-+.+. .+-.|+.. .++|.+. -+.++..
T Consensus 13 ~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~e~i 92 (380)
T PTZ00466 13 QPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDMENI 92 (380)
T ss_pred CeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHHHHHH
Confidence 35799999999997766321101 0 112222111 11234321 2234343 3666666
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEEeeh-hhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEE
Q 008124 69 VESLLMFRDIIQSHNISRDHTRAVATA-AVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLS 147 (577)
Q Consensus 69 ~~~L~~f~~~~~~~~v~~~~i~~vATs-A~R~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lv 147 (577)
.+-+ |. ..++++...-++-|+ .+--..+++.+.+.+.+..+++-=.+ ...+.++.++. ....++|
T Consensus 93 w~~~--f~----~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~--~~~~~lsl~a~------g~~tglV 158 (380)
T PTZ00466 93 WIHV--YN----SMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFI--SIQAILSLYSC------GKTNGTV 158 (380)
T ss_pred HHHH--Hh----hcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEE--ecchHHHHHhc------CCceEEE
Confidence 6654 42 245554333444444 44445667777888888878764322 23444444432 2245899
Q ss_pred EEeCCCceEEEEeeCCeEEE--EEEEehhHHHHHHhh
Q 008124 148 VDIGGGSTEFVIGKRGKVVF--CESVNLGHVSLSEKF 182 (577)
Q Consensus 148 iDIGGGStEl~~~~~~~~~~--~~SlplG~vrl~e~f 182 (577)
+|+|-++|.++-+-+|.+.. ...+++|.-.+++.+
T Consensus 159 VD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L 195 (380)
T PTZ00466 159 LDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYL 195 (380)
T ss_pred EeCCCCceEEEEEECCEEeecceeEecCchhHHHHHH
Confidence 99999999999998888763 456788888777754
No 63
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=92.82 E-value=3.5 Score=47.57 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEee
Q 008124 105 EFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGK 161 (577)
Q Consensus 105 ~fl~~i~~~tGl~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~ 161 (577)
..+...-+..|+++ ++|+...=|-+.| |...... .+...+|+|+|||++.+++++
T Consensus 157 ~a~~~Aa~~AGl~v~~li~EptAAAl~y-~~~~~~~-~~~~vlv~D~GggT~dvsv~~ 212 (653)
T PTZ00009 157 QATKDAGTIAGLNVLRIINEPTAAAIAY-GLDKKGD-GEKNVLIFDLGGGTFDVSLLT 212 (653)
T ss_pred HHHHHHHHHcCCceeEEecchHHHHHHH-hhhccCC-CCCEEEEEECCCCeEEEEEEE
Confidence 34445556779995 6888888887776 3322211 235689999999999998866
No 64
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=92.51 E-value=1.9 Score=44.36 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=66.6
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEE-EE
Q 008124 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTR-AV 92 (577)
Q Consensus 14 ~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~-~v 92 (577)
.++.|||||-+++.++.+ . + +++. .....+|.-..++.. + -+.+++++.|....++. ++
T Consensus 33 ~~~GIDiGStt~K~Vlld-~--~--~i~~---------~~~~~tg~~~~~~a~---~---~l~~~l~~~g~~~~~v~~~~ 92 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVC-D--G--ELYG---------YNSMRTGNNSPDSAK---N---ALQGIMDKIGMKLEDINYVV 92 (293)
T ss_pred EEEEEEeCchhEEEEEEe-C--C--EEEE---------EEeecCCCCHHHHHH---H---HHHHHHHHcCCcccceEEEE
Confidence 589999999999999996 2 3 2332 222233332333322 2 23344445565433344 56
Q ss_pred eehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEe-eCCeEE
Q 008124 93 ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG-KRGKVV 166 (577)
Q Consensus 93 ATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~-~~~~~~ 166 (577)
+|--=|..- .|.+ ++ -.|----..|+....|. +--.|+||||--+-++.. ++|++.
T Consensus 93 ~TGyGr~~~---~~a~----------~~---v~EItaha~Ga~~~~pp--~v~tIIDIGGQDsK~I~~d~~G~v~ 149 (293)
T TIGR03192 93 GTGYGRVNV---PFAH----------KA---ITEIACHARGANYMGGN--AVRTILDMGGQDCKAIHCDEKGKVT 149 (293)
T ss_pred EECcchhhc---chhh----------cc---eeeHHHHHHHHHHhcCC--CCCEEEEeCCCceEEEEEcCCCcEe
Confidence 776666432 1211 22 24555666777765532 224899999999999987 567653
No 65
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=92.50 E-value=0.58 Score=44.91 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=38.7
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHH
Q 008124 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDII 79 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~ 79 (577)
+++|||||.++++++++..+++.++++.....+ ..|+ .+|.+.+ ++.+.+++++..+.+
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~---s~gi-~~G~I~d--~~~~~~~I~~ai~~a 59 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVP---SRGI-RKGVIVD--IEAAARAIREAVEEA 59 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEec---CCCc-cCcEEEC--HHHHHHHHHHHHHHH
Confidence 479999999999999998766788888655544 3343 3465554 334444444443333
No 66
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=92.49 E-value=0.17 Score=60.17 Aligned_cols=55 Identities=27% Similarity=0.234 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhcc
Q 008124 398 DLEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (577)
Q Consensus 398 ~r~LL~~Aa~LHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhr 453 (577)
.+.+|.+||+|||||+-- ..+|++-|+.+..+--.=+||+.++...++.++++|-
T Consensus 464 ~~~~L~lAaLlHDiGKg~-~~~H~~~Ga~~a~~~~~rl~l~~~~~~~v~~LV~~Hl 518 (850)
T TIGR01693 464 DPELLYLAALLHDIGKGR-GGDHSVLGAEDARDVCPRLGLDRPDTELVAWLVRNHL 518 (850)
T ss_pred CHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 357899999999999964 4678888998876532247999999999999999995
No 67
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=92.45 E-value=0.29 Score=51.82 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=34.1
Q ss_pred CCceEEEEeCCCceEEEEeeCCeEEEEEE--EehhHHHHHHh
Q 008124 142 DRLVLSVDIGGGSTEFVIGKRGKVVFCES--VNLGHVSLSEK 181 (577)
Q Consensus 142 ~~~~lviDIGGGStEl~~~~~~~~~~~~S--lplG~vrl~e~ 181 (577)
+...+++|||||+|+++.++++++....| ++.|...+.+.
T Consensus 184 ~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~ 225 (344)
T PRK13917 184 EGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKR 225 (344)
T ss_pred cCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHH
Confidence 34579999999999999999999976666 99999888764
No 68
>COG5371 Golgi nucleoside diphosphatase [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones]
Probab=92.40 E-value=0.19 Score=53.85 Aligned_cols=143 Identities=22% Similarity=0.176 Sum_probs=84.1
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHH----HH-HHHcCCCcc
Q 008124 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFR----DI-IQSHNISRD 87 (577)
Q Consensus 13 ~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~----~~-~~~~~v~~~ 87 (577)
+.+..||-||-.-|.-|+++. +|......-+-..-+|-.++.+...-+. ++.....+|-..+ -. ++ .+.
T Consensus 120 qYv~~idagstgsr~~iyqfi-dge~~~~~~~~~~n~L~~~l~d~d~~t~-G~~~s~~~l~qiA~~~~p~e~~--r~~-- 193 (549)
T COG5371 120 QYVKMIDAGSTGSRSNIYQFI-DGEIEGQYLWLNTNYLEPGLSDFDTDTV-GFADSGGALLQIAFEFVPSEIR--RCM-- 193 (549)
T ss_pred heecccccCCCccceeEEEee-cCccCcchhhhhhhhhcccccccccccH-HHHhhccHHHHhhhccCCHHHh--hcC--
Confidence 467899999999999999987 5655444333333344444433211122 2222223322221 11 11 222
Q ss_pred cEEEEeehhhhhc--CChHHHHHHHHHHc----------CCcEEEeChHHHHHHHHhhhhccC----CC-C-CCceEEEE
Q 008124 88 HTRAVATAAVRAA--ENKDEFVECVREKV----------GFEVDVLTGEQEAKFVYMGVLQFL----PV-F-DRLVLSVD 149 (577)
Q Consensus 88 ~i~~vATsA~R~A--~N~~~fl~~i~~~t----------Gl~i~VIsg~eEA~l~~~gv~~~~----~~-~-~~~~lviD 149 (577)
.+.+.||+.+|-- .-...++..++..+ |.-|+++.|.+|.-|.+--+...+ .. . ...+-++|
T Consensus 194 pi~~~~taGlrl~Gds~s~~vl~s~r~~l~~n~~f~~y~g~~ieil~G~~Eg~~a~~~m~~~ls~~g~~~~~~~T~~v~d 273 (549)
T COG5371 194 PIIVTATAGLRLLGDSRSDHVLVSTRLGLGANYAFRRYLGDLIEILNGVDEGNLADPCMNRGLSNDGTDAGTHGTGAVVD 273 (549)
T ss_pred cceEEEEeeeeecCccchhhHHHHHHHhhccccccceecccceeeccCccccchhhhhhhhhhccccCCCcccCccccee
Confidence 4678899999921 22345666666655 457999999999966554333221 11 1 23478999
Q ss_pred eCCCceEEEEee
Q 008124 150 IGGGSTEFVIGK 161 (577)
Q Consensus 150 IGGGStEl~~~~ 161 (577)
.|||||++++-.
T Consensus 274 ~gg~stqll~~~ 285 (549)
T COG5371 274 CGGGSTQLLLKP 285 (549)
T ss_pred ccCcceeeeecC
Confidence 999999998644
No 69
>PTZ00452 actin; Provisional
Probab=92.09 E-value=2.5 Score=45.30 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=62.0
Q ss_pred cCCCcccEEEEeeh-hhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEe
Q 008124 82 HNISRDHTRAVATA-AVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (577)
Q Consensus 82 ~~v~~~~i~~vATs-A~R~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~ 160 (577)
.++++.+-.++-|+ .+.-..|++.+.+.+.+..+++-=.+ ...+.++.++. ....++|+|+|-|+|.++-+
T Consensus 94 l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~--~~~~~lslya~------g~~tglVVDiG~~~t~v~PV 165 (375)
T PTZ00452 94 LCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYI--SNEAVLSLYTS------GKTIGLVVDSGEGVTHCVPV 165 (375)
T ss_pred cCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEE--echHHHHHHHC------CCceeeeecCCCCcceEEEE
Confidence 45655444455565 44445677888888888888864332 23334444431 22458999999999999999
Q ss_pred eCCeEE--EEEEEehhHHHHHHhh
Q 008124 161 KRGKVV--FCESVNLGHVSLSEKF 182 (577)
Q Consensus 161 ~~~~~~--~~~SlplG~vrl~e~f 182 (577)
-+|.+. ....+++|.-.+++.+
T Consensus 166 ~dG~~l~~~~~r~~~gG~~lt~~L 189 (375)
T PTZ00452 166 FEGHQIPQAITKINLAGRLCTDYL 189 (375)
T ss_pred ECCEEeccceEEeeccchHHHHHH
Confidence 998775 3456788887777644
No 70
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=91.66 E-value=0.28 Score=53.22 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=43.3
Q ss_pred HHHHHHHHhhccccc-------CCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhcc
Q 008124 401 YLEAACLLHNIGHFT-------SKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (577)
Q Consensus 401 LL~~Aa~LHdIG~~I-------~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhr 453 (577)
.|.+||+|||+|+.. ++++|.+-|..++..--.=++++.+.+..+..+++||-
T Consensus 247 ~lr~AaLlHDlGK~~t~~~~~~~~~gH~~~Ga~~a~~i~~RLk~p~~~~~~~~~lv~~H~ 306 (409)
T PRK10885 247 DVRFAALCHDLGKGLTPPEEWPRHHGHEPRGVKLVEQLCQRLRVPNECRDLALLVAEEHD 306 (409)
T ss_pred HHHHHHHhccccCCCCCcccCcccCchhHhHHHHHHHHHHHcCcCHHHHHHHHHHHHHhh
Confidence 589999999999976 45578888888875532247999999999999999995
No 71
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=91.01 E-value=0.27 Score=48.73 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=40.2
Q ss_pred chhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCC---chhhhHHHHHcC
Q 008124 360 VKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKG---YHKQSCHIIMNG 431 (577)
Q Consensus 360 ~~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~~~---h~~Hs~yiI~ns 431 (577)
..|+..|+.+|..| +...|. +-.+...||+|||||..+.+.. |..=++-+...-
T Consensus 38 l~H~~~Va~lA~~I----a~~~g~--------------D~~l~~~aaLLHDIg~~~~~~~~~~h~~~gae~a~~~ 94 (222)
T COG1418 38 LEHSLRVAYLAYRI----AEEEGV--------------DPDLALRAALLHDIGKAIDHEPGGSHAEIGAEIARKF 94 (222)
T ss_pred HHHHHHHHHHHHHH----HHHcCC--------------CHHHHHHHHHHHhhccccccCCccchHHHHHHHHHHH
Confidence 38999999999985 433332 3478999999999999998874 555566665444
No 72
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=90.42 E-value=1.8 Score=43.96 Aligned_cols=118 Identities=17% Similarity=0.211 Sum_probs=63.9
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCccc-EEEE
Q 008124 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDH-TRAV 92 (577)
Q Consensus 14 ~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~-i~~v 92 (577)
.++.||+||-+.+.++.+.+ ++.+..+..... +. ++.-+.++ +-++| .+++++.|++..+ ..++
T Consensus 2 ~~~GIDiGStttK~Vlid~~-~~~~~~~~~~~~--~~------~~~~~~~~---~~~~l---~~~~~~~g~~~~~i~~i~ 66 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVD-GDKEECLAKRND--RI------RQRDPFKL---AEDAY---DDLLEEAGLAAADVAYCA 66 (262)
T ss_pred eEEEEEcCcccEEEEEEecC-CCeeEEEEEEEe--cC------CCCCHHHH---HHHHH---HHHHHHcCCChhheEEEE
Confidence 47899999999999999742 222333322111 11 01111222 22333 3444456663223 3456
Q ss_pred eehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEe-eCCeEE
Q 008124 93 ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG-KRGKVV 166 (577)
Q Consensus 93 ATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~-~~~~~~ 166 (577)
+|--=|.. .|.+ +.-. |-.--..|+....| +. ..|+||||--+-++.. ++|.+.
T Consensus 67 ~TGYGR~~----~~a~------~~vt-------EIt~ha~GA~~~~p--~~-~tIiDIGGQD~K~I~~~~~G~v~ 121 (262)
T TIGR02261 67 TTGEGESL----AFHT------GHFY-------SMTTHARGAIYLNP--EA-RAVLDIGALHGRAIRMDERGKVE 121 (262)
T ss_pred EECCchhh----hhhc------CCee-------EEeHHHHHHHHHCC--CC-CEEEEeCCCceEEEEEcCCCcEe
Confidence 77655543 2221 1111 34445566665554 22 4999999999998887 467653
No 73
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=90.23 E-value=0.56 Score=49.11 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=45.4
Q ss_pred cEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEE--EEEEehhHHHHHHhh
Q 008124 117 EVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVF--CESVNLGHVSLSEKF 182 (577)
Q Consensus 117 ~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~--~~SlplG~vrl~e~f 182 (577)
++.|+....=|.+.++-=-......+.+.+|+||||++|.++.++++.+.. +.|++.|+..+.+..
T Consensus 141 ~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I 208 (320)
T TIGR03739 141 KVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLL 208 (320)
T ss_pred EEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHH
Confidence 356777666666655421001111345589999999999999999998875 456899998888754
No 74
>PTZ00281 actin; Provisional
Probab=90.12 E-value=1.2 Score=47.62 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=59.2
Q ss_pred cCCCcccEEEEeehh-hhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEe
Q 008124 82 HNISRDHTRAVATAA-VRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (577)
Q Consensus 82 ~~v~~~~i~~vATsA-~R~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~ 160 (577)
.++++...-++-|+. +--..+++.+.+.+.+..+++-=-+ ...+.++.++. ....++|+|+|-++|.++-+
T Consensus 95 l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~--~~~~~ls~ya~------g~~tglVVDiG~~~t~v~PV 166 (376)
T PTZ00281 95 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYV--AIQAVLSLYAS------GRTTGIVMDSGDGVSHTVPI 166 (376)
T ss_pred ccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEe--eccHHHHHHhc------CCceEEEEECCCceEEEEEE
Confidence 456554445555654 3334566777777788877763222 22233333321 22458999999999999988
Q ss_pred eCCeEE--EEEEEehhHHHHHHhh
Q 008124 161 KRGKVV--FCESVNLGHVSLSEKF 182 (577)
Q Consensus 161 ~~~~~~--~~~SlplG~vrl~e~f 182 (577)
-+|.+. ....+++|.-.+++.+
T Consensus 167 ~dG~~~~~~~~~~~~GG~~lt~~L 190 (376)
T PTZ00281 167 YEGYALPHAILRLDLAGRDLTDYM 190 (376)
T ss_pred EecccchhheeeccCcHHHHHHHH
Confidence 888776 4456788887777654
No 75
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=90.06 E-value=5.7 Score=42.47 Aligned_cols=92 Identities=21% Similarity=0.199 Sum_probs=55.9
Q ss_pred cCCCcccEEEEeehhhh-hcCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEE
Q 008124 82 HNISRDHTRAVATAAVR-AAENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (577)
Q Consensus 82 ~~v~~~~i~~vATsA~R-~A~N~~~fl~~i~~~tGl~-i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~ 159 (577)
.++++.+..++-|.... ...-++.+.+.+.+..|++ +-+++. +.++.++.- ...++|+|+|.++|.++-
T Consensus 88 l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~---~~~a~~~~g------~~tglVVD~G~~~t~v~p 158 (393)
T PF00022_consen 88 LKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPS---PLLALYASG------RTTGLVVDIGYSSTSVVP 158 (393)
T ss_dssp T-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEH---HHHHHHHTT------BSSEEEEEESSS-EEEEE
T ss_pred cccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeec---ccccccccc------cccccccccceeeeeeee
Confidence 35555555666665432 2234456777788888877 334443 333333322 235899999999999999
Q ss_pred eeCCeEEE--EEEEehhHHHHHHhh
Q 008124 160 GKRGKVVF--CESVNLGHVSLSEKF 182 (577)
Q Consensus 160 ~~~~~~~~--~~SlplG~vrl~e~f 182 (577)
+-+|.++. ...+|+|.-.+++.+
T Consensus 159 V~dG~~~~~~~~~~~~GG~~lt~~l 183 (393)
T PF00022_consen 159 VVDGYVLPHSIKRSPIGGDDLTEYL 183 (393)
T ss_dssp EETTEE-GGGBEEES-SHHHHHHHH
T ss_pred eeeccccccccccccccHHHHHHHH
Confidence 99998863 467899998887754
No 76
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=90.04 E-value=4.2 Score=46.44 Aligned_cols=116 Identities=18% Similarity=0.220 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHc-CCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhc
Q 008124 59 SISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQ 136 (577)
Q Consensus 59 ~Ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i-~VIsg~eEA~l~~~gv~~ 136 (577)
.++++.+ +...|+.+++.++.+ |.+.. .+|-|==.---.+....+..+-+..|+++ ++|+...=|-+.| |.-.
T Consensus 103 ~~~p~ei--~a~iL~~lk~~a~~~lg~~v~--~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-~~~~ 177 (599)
T TIGR01991 103 TVTPVEV--SAEILKKLKQRAEESLGGDLV--GAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAY-GLDK 177 (599)
T ss_pred EEcHHHH--HHHHHHHHHHHHHHHhCCCcc--eEEEEECCCCCHHHHHHHHHHHHHcCCCceEEecCHHHHHHHH-hhcc
Confidence 4455433 345677777766554 44322 33433110001123334555566789997 5888888887776 3322
Q ss_pred cCCCCCCceEEEEeCCCceEEEEee--CCeEE---EEEEEehhHHHHHHhh
Q 008124 137 FLPVFDRLVLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSEKF 182 (577)
Q Consensus 137 ~~~~~~~~~lviDIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~e~f 182 (577)
. .+...+|+|+|||++.+++++ ++.+. .....++|..-+.+.+
T Consensus 178 ~---~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l 225 (599)
T TIGR01991 178 A---SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHAL 225 (599)
T ss_pred C---CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHH
Confidence 1 235689999999999999876 44322 1122478877666543
No 77
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=89.85 E-value=0.62 Score=49.35 Aligned_cols=108 Identities=16% Similarity=0.212 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCC------------------CCchh
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK------------------KGYHK 422 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~------------------~~h~~ 422 (577)
.|+.+|+.+|..| ....|| +++..+.|.+||+|||||+--=+ ..|..
T Consensus 151 ~Hs~~va~~a~~i----a~~lgl-----------~~~~i~~l~~aalLHDIGKi~ip~~IL~K~g~Lt~eE~~~ik~H~~ 215 (344)
T COG2206 151 GHSVRVAELAEAI----AKKLGL-----------SEEKIEELALAGLLHDIGKIGIPDSILNKPGKLTEEEFEIIKKHPI 215 (344)
T ss_pred HHHHHHHHHHHHH----HHHcCC-----------CHHHHHHHHHHHHHhhcccccCCHHHhCCCCCCCHHHHHHHHhchH
Confidence 6999999999875 444443 44566899999999999985332 34555
Q ss_pred hhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhcCCChHHHHHHHHHHHHHHHHHHhccccCCC
Q 008124 423 QSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDCVN 495 (577)
Q Consensus 423 Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhrk~~~~~~~~~~~~l~~~~~~~v~kL~~iLRlA~~Ld~s~~~~ 495 (577)
.|+.++.+.+ -|+ ..+..++.+|.-..... -+..-|..++ +-..+.|+-+|+..|.-....
T Consensus 216 ~g~~iL~~~~---~~~----~~~~~~~l~HHEr~DGt--GYP~GL~Gee---I~l~aRIiAVADvydAlts~R 276 (344)
T COG2206 216 YGYDILKDLP---EFL----ESVRAVALRHHERWDGT--GYPRGLKGEE---IPLEARIIAVADVYDALTSDR 276 (344)
T ss_pred HHHHHHHhcc---ccc----HHHHHHHHHhhhccCCC--CCCCCCCccc---CChHhHHHHHhhHHHHHhcCC
Confidence 5555554442 122 22333444454333321 1122343333 334677888888887554333
No 78
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=89.76 E-value=1.5 Score=41.87 Aligned_cols=68 Identities=21% Similarity=0.334 Sum_probs=37.7
Q ss_pred HHHHHHHhhcccccC-----------CCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhcCCChH
Q 008124 402 LEAACLLHNIGHFTS-----------KKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQ 470 (577)
Q Consensus 402 L~~Aa~LHdIG~~I~-----------~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhrk~~~~~~~~~~~~l~~~ 470 (577)
+-+||+|||||..++ ..+|..-++.+|.. + |+.+=..+|..-+..+|-=- ..+..++..||+.
T Consensus 46 lvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~---~--F~~~V~~lV~~Hv~aKryl~-a~~p~Y~~~LS~a 119 (179)
T TIGR03276 46 LIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRE---L--FSPSVTEPIRLHVQAKRYLC-AVDPAYAESLSPA 119 (179)
T ss_pred HHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHH---H--cCHHHHHHHHHHHHHHHHHH-ccChHHHHHcCHH
Confidence 689999999999887 44455666777642 2 66654444444332211100 0112455566655
Q ss_pred HHHHH
Q 008124 471 AKQKF 475 (577)
Q Consensus 471 ~~~~v 475 (577)
.+...
T Consensus 120 S~~sL 124 (179)
T TIGR03276 120 SRRSL 124 (179)
T ss_pred HHhHH
Confidence 55443
No 79
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=88.84 E-value=3.6 Score=44.59 Aligned_cols=158 Identities=23% Similarity=0.330 Sum_probs=72.1
Q ss_pred EEEEEecccceEEEEEEEeCCCC-EEEEEeeeeeeeeccCCCcC--CCCCHHHHHH----HHHHHHH-HHHHHHHcCCCc
Q 008124 15 FASIDMGTSSFKLLIIRAYPNGK-FLTIDTLKQPVILGRDLSSS--CSISTQSQAR----SVESLLM-FRDIIQSHNISR 86 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~~~~-~~~l~~~k~~vrLg~~~~~~--g~Ls~e~i~r----~~~~L~~-f~~~~~~~~v~~ 86 (577)
=.+|||||.++.+.+++.. +|. +......+-....|.++-+. -..+++..++ .++.|.. +.++|.+.|+++
T Consensus 3 GiAvDiGTTti~~~L~dl~-~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~ 81 (412)
T PF14574_consen 3 GIAVDIGTTTIAAYLVDLE-TGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISP 81 (412)
T ss_dssp EEEEEE-SSEEEEEEEETT-T--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--G
T ss_pred EEEEEcchhheeeEEEECC-CCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3589999999999999986 454 33444455556678776421 0112222222 2333443 345566668877
Q ss_pred ccEE---EEeehhh------------hhcCChHHHHHHH---HHHcCC------cEEEeC---hHHHHHHHHhhhh-ccC
Q 008124 87 DHTR---AVATAAV------------RAAENKDEFVECV---REKVGF------EVDVLT---GEQEAKFVYMGVL-QFL 138 (577)
Q Consensus 87 ~~i~---~vATsA~------------R~A~N~~~fl~~i---~~~tGl------~i~VIs---g~eEA~l~~~gv~-~~~ 138 (577)
++|. +++-.+| ..++=...|.+.. -.++|+ +|.++. |--=+-.. -|+. ..+
T Consensus 82 ~~I~~i~i~GNt~M~hLllGl~~~~L~~~Pf~p~~~~~~~~~a~~lgl~~~~~~~v~~~P~i~~fVG~Div-Agl~a~~~ 160 (412)
T PF14574_consen 82 EDIYEIVIVGNTTMLHLLLGLDPEGLGRAPFVPVFRGGVEIPAAELGLEINPDARVYILPNISGFVGADIV-AGLLATGM 160 (412)
T ss_dssp GGEEEEEEEE-HHHHHHHHT---GGGSSTTT--S-S----EEHHHHT-SS-TTSEEEE----BTTB-HHHH-HHHHHHTC
T ss_pred HHeEEEEEEecHHHHHHHcCCChHHhccCCcccccCCCcEEeHHHhCcccCCCCEEEEcCcccccccHHHH-HHHHhcCc
Confidence 6653 3343333 2232111221111 122354 333332 21111111 1111 122
Q ss_pred CCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEehhHH
Q 008124 139 PVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHV 176 (577)
Q Consensus 139 ~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~v 176 (577)
...+++.|++|||. +.|++++.++++ ++.|-|-|+.
T Consensus 161 ~~~~~~~LliDiGT-NgEivL~~~~~~-~a~S~AAGPA 196 (412)
T PF14574_consen 161 DESDEPSLLIDIGT-NGEIVLGNGGKL-LACSTAAGPA 196 (412)
T ss_dssp CC-SS-EEEEEESS-CEEEEEE-SS-E-EEEEEE--TC
T ss_pred ccCCCcEEEEEecC-CeEEEEecCCEE-EEEeccCChh
Confidence 23456799999987 679999999776 5779998874
No 80
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=88.42 E-value=2 Score=46.13 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=64.7
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEE-E
Q 008124 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTR-A 91 (577)
Q Consensus 13 ~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~-~ 91 (577)
..++.||+||.|++.++.+ ++ +++...-.+ ++ ...+.+.++++ +.+++.|++..++. +
T Consensus 144 g~~lGIDiGSTttK~Vl~d---d~--~Ii~~~~~~---------t~----~~~~~a~~~l~---~~l~~~Gl~~~di~~i 202 (404)
T TIGR03286 144 GLTLGIDSGSTTTKAVVME---DN--EVIGTGWVP---------TT----KVIESAEEAVE---RALEEAGVSLEDVEAI 202 (404)
T ss_pred CEEEEEEcChhheeeEEEc---CC--eEEEEEEee---------cc----cHHHHHHHHHH---HHHHHcCCCccceeEE
Confidence 3689999999999999985 33 455432221 11 11222333333 44555676444454 4
Q ss_pred EeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEE
Q 008124 92 VATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVV 166 (577)
Q Consensus 92 vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~ 166 (577)
++|--=|.. +. ...|.+. + .+|---...|+..-.|...+...|+||||--...+..++|.+.
T Consensus 203 ~~TGyGR~~------i~---~~~~ad~-i---v~EItaha~GA~~L~p~~~~v~TIIDIGGQDsK~I~l~~G~v~ 264 (404)
T TIGR03286 203 GTTGYGRFT------IG---EHFGADL-I---QEELTVNSKGAVYLADKQEGPATVIDIGGMDNKAISVWDGIPD 264 (404)
T ss_pred EeeeecHHH------Hh---hhcCCCc-e---EEEEhhHHHHHHHhcccCCCCcEEEEeCCCceEEEEEcCCcee
Confidence 556544432 21 1122220 0 1233344556655444212236999999988888877777653
No 81
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=88.34 E-value=12 Score=38.73 Aligned_cols=141 Identities=15% Similarity=0.078 Sum_probs=83.3
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEE
Q 008124 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (577)
Q Consensus 13 ~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (577)
..+..||||.+++++.+++.. |.+ +.+.+.++. .. .-.++.++...+.++++.+... ....+..|
T Consensus 6 ~~~lgidIggt~i~~~l~d~~--g~~--l~~~~~~~~--~~-----~~~~~~~~~i~~~i~~~~~~~~----~~~~~iGI 70 (314)
T COG1940 6 MTVLGIDIGGTKIKVALVDLD--GEI--LLRERIPTP--TP-----DPEEAILEAILALVAELLKQAQ----GRVAIIGI 70 (314)
T ss_pred cEEEEEEecCCEEEEEEECCC--CcE--EEEEEEecC--CC-----CchhHHHHHHHHHHHHHHHhcC----CcCceEEE
Confidence 468999999999999999764 433 333333311 11 1114667777777777776432 11234555
Q ss_pred eehhhh---------hcC-----ChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEE
Q 008124 93 ATAAVR---------AAE-----NKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (577)
Q Consensus 93 ATsA~R---------~A~-----N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~ 158 (577)
+-+.-- .+. +.-.|.+.+++.+|++|.|-+.-.=+-+.-.=.-.. ...++.+++-+|-| +.-.
T Consensus 71 gi~~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~Pv~veNDan~aalaE~~~g~~--~~~~~~~~i~~gtG-IG~g 147 (314)
T COG1940 71 GIPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLGLPVFVENDANAAALAEAWFGAG--RGIDDVVYITLGTG-IGGG 147 (314)
T ss_pred EeccceeccCCcEEeecCCCCccccccHHHHHHHHHCCCEEEecHHHHHHHHHHHhCCC--CCCCCEEEEEEccc-eeEE
Confidence 433221 122 224589999999999999988766555543211111 12245788888766 3444
Q ss_pred EeeCCeEEEEEEE
Q 008124 159 IGKRGKVVFCESV 171 (577)
Q Consensus 159 ~~~~~~~~~~~Sl 171 (577)
++-+|++....+.
T Consensus 148 iv~~g~l~~G~~g 160 (314)
T COG1940 148 IIVNGKLLRGANG 160 (314)
T ss_pred EEECCEEeecCCC
Confidence 6667777655433
No 82
>CHL00094 dnaK heat shock protein 70
Probab=88.02 E-value=5.7 Score=45.57 Aligned_cols=70 Identities=23% Similarity=0.394 Sum_probs=46.0
Q ss_pred HHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEE-----EEEEEehhHHHHHH
Q 008124 107 VECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVV-----FCESVNLGHVSLSE 180 (577)
Q Consensus 107 l~~i~~~tGl~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~-----~~~SlplG~vrl~e 180 (577)
+...-+..|+++ ++|+...=|-+.| |.-. . .+...+|+|+|||++.+++++-+... .....++|.--+.+
T Consensus 154 ~~~Aa~~AGl~v~~li~EptAAAlay-~~~~--~-~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~ 229 (621)
T CHL00094 154 TKDAGKIAGLEVLRIINEPTAASLAY-GLDK--K-NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDK 229 (621)
T ss_pred HHHHHHHcCCceEEEeccHHHHHHHh-cccc--C-CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHH
Confidence 344445679995 6888888888776 3221 1 23568999999999999987643221 13345677765554
No 83
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=87.66 E-value=3.1 Score=48.96 Aligned_cols=82 Identities=18% Similarity=0.112 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhccccc-------------------------
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFT------------------------- 415 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I------------------------- 415 (577)
+|...|+++|..+ ++.+|+. ...+++++|++|||+|++-
T Consensus 678 eHl~~va~lA~~f----a~~~gl~------------~~~~~~~laGllHDlGK~~~~FQ~yL~~~~~p~~~~~~~~~~~~ 741 (844)
T TIGR02621 678 DHLDNVFEVAKNF----VAKLGLG------------DLDKAVRQAARLHDLGKQRPRFQTMLGNRSYPLAKLAKSGPWAA 741 (844)
T ss_pred HHHHHHHHHHHHH----HHHcCch------------HHHHHHHHHHHhcccccCCHHHHHHhcCCCCccccccccccchh
Confidence 5888888888763 4444431 2235689999999999974
Q ss_pred ----CCCCchhhhHHHHHcCCCCCCCCHHHHH-HHHHHHHhccCCCCC
Q 008124 416 ----SKKGYHKQSCHIIMNGDHLYGYSTDEIK-LIALLTRFHRKKFPR 458 (577)
Q Consensus 416 ----~~~~h~~Hs~yiI~ns~~l~G~s~~E~~-~iA~i~~yhrk~~~~ 458 (577)
..+.|-.+|-.-+.|.+....+++.++. ++=+++.+|+...|-
T Consensus 742 ~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~lvl~liaaHHg~~rp~ 789 (844)
T TIGR02621 742 KIARSMYRHEKGSLIDVANAPGFSMLSEELSDLVLHLVATHHGRNRPH 789 (844)
T ss_pred hhhhhhhcCCchhHHhhhccccccccChhHHHHHHHHHHHhccCCCCC
Confidence 2355666666666665445667777765 455577888777764
No 84
>PRK11678 putative chaperone; Provisional
Probab=87.46 E-value=6.9 Score=43.07 Aligned_cols=86 Identities=23% Similarity=0.367 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHc-CCCcccEEEEeehhh--h----hcCCh--HHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhccCC
Q 008124 70 ESLLMFRDIIQSH-NISRDHTRAVATAAV--R----AAENK--DEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLP 139 (577)
Q Consensus 70 ~~L~~f~~~~~~~-~v~~~~i~~vATsA~--R----~A~N~--~~fl~~i~~~tGl~-i~VIsg~eEA~l~~~gv~~~~~ 139 (577)
..|+.+++.++.+ |.+.. .+|-|-=. . ...|+ ..++....+..|++ +++++...=|-+.| |. .++
T Consensus 132 ~iL~~lk~~ae~~~g~~v~--~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y-~~--~~~ 206 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAIT--QAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDF-EA--TLT 206 (450)
T ss_pred HHHHHHHHHHHHHhCCCCC--cEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHh-cc--ccC
Confidence 3456666666544 54322 34544222 2 13333 24566777788998 57889888888877 32 222
Q ss_pred CCCCceEEEEeCCCceEEEEee
Q 008124 140 VFDRLVLSVDIGGGSTEFVIGK 161 (577)
Q Consensus 140 ~~~~~~lviDIGGGStEl~~~~ 161 (577)
.++..+|+|+|||++.+++.+
T Consensus 207 -~~~~vlV~D~GGGT~D~Svv~ 227 (450)
T PRK11678 207 -EEKRVLVVDIGGGTTDCSMLL 227 (450)
T ss_pred -CCCeEEEEEeCCCeEEEEEEE
Confidence 245689999999999999876
No 85
>PRK13321 pantothenate kinase; Reviewed
Probab=87.35 E-value=14 Score=37.21 Aligned_cols=130 Identities=16% Similarity=0.253 Sum_probs=70.1
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEee
Q 008124 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (577)
+-+||||-.++++-+++ . + +++.+.+.++.... ++ + +.+..+.++++.++.+..++..++-
T Consensus 2 iL~IDIGnT~ik~gl~~-~--~--~i~~~~~~~T~~~~--------~~---~---~~~~~l~~l~~~~~~~~~~i~~i~v 62 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-G--D--RLLRSFRLPTDKSR--------TS---D---ELGILLLSLFRHAGLDPEDIRAVVI 62 (256)
T ss_pred EEEEEECCCeEEEEEEE-C--C--EEEEEEEEecCCCC--------CH---H---HHHHHHHHHHHHcCCChhhCCeEEE
Confidence 35799999999999986 2 2 34544443322111 11 1 2233334444555543334555565
Q ss_pred hhhhhcCChHHHHHHHHHHcCCcEEEeChH-----HHHH-----------HHHhhhhccCCCCCCceEEEEeCCCceEEE
Q 008124 95 AAVRAAENKDEFVECVREKVGFEVDVLTGE-----QEAK-----------FVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (577)
Q Consensus 95 sA~R~A~N~~~fl~~i~~~tGl~i~VIsg~-----eEA~-----------l~~~gv~~~~~~~~~~~lviDIGGGStEl~ 158 (577)
+.+..+. ...+.+.+.+..+.++.+++.. +.+| ....|+....+ .++.+|+|.|..-|==+
T Consensus 63 ssVvp~~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~y~~P~~lG~DR~a~~~aa~~~~~--~~~~lvid~GTA~T~d~ 139 (256)
T PRK13321 63 SSVVPPL-NYSLESACKRYFGIKPLFVGPGIKTGLKIRYDNPREVGADRIVNAVAARRLYP--DRNLIVVDFGTATTFDC 139 (256)
T ss_pred EeecccH-HHHHHHHHHHHhCCCeEEECCCCCCCcccccCChhhccHHHHHHHHHHHHHcC--CCCEEEEECCCceEEEE
Confidence 5676543 4556666666677777665321 1111 22223322222 23689999999988665
Q ss_pred EeeCCeEE
Q 008124 159 IGKRGKVV 166 (577)
Q Consensus 159 ~~~~~~~~ 166 (577)
+-.+|+..
T Consensus 140 v~~~g~~~ 147 (256)
T PRK13321 140 VSGKGEYL 147 (256)
T ss_pred EcCCCcEE
Confidence 55555544
No 86
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=87.21 E-value=7.3 Score=44.97 Aligned_cols=98 Identities=18% Similarity=0.260 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhcc
Q 008124 60 ISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQF 137 (577)
Q Consensus 60 Ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i-~VIsg~eEA~l~~~gv~~~ 137 (577)
++++-+.. ..|+..++.++.| |.+.. .+|-|--.---.+....+...-+..|+++ ++|+...=|-+.| |.-.
T Consensus 135 ~speeisa--~iL~~Lk~~Ae~~lg~~v~--~aVITVPayF~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlay-g~~~- 208 (657)
T PTZ00186 135 YSPSQIGA--FVLEKMKETAENFLGHKVS--NAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAY-GMDK- 208 (657)
T ss_pred EcHHHHHH--HHHHHHHHHHHHHhCCccc--eEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHH-hccC-
Confidence 44544433 2345555656554 54322 33333111111223334555556789996 6899998888877 3321
Q ss_pred CCCCCCceEEEEeCCCceEEEEee--CCeE
Q 008124 138 LPVFDRLVLSVDIGGGSTEFVIGK--RGKV 165 (577)
Q Consensus 138 ~~~~~~~~lviDIGGGStEl~~~~--~~~~ 165 (577)
. .+...+|+|+|||++.+++++ +|.+
T Consensus 209 -~-~~~~vlV~DlGGGT~DvSil~~~~g~~ 236 (657)
T PTZ00186 209 -T-KDSLIAVYDLGGGTFDISVLEIAGGVF 236 (657)
T ss_pred -C-CCCEEEEEECCCCeEEEEEEEEeCCEE
Confidence 1 245689999999999999876 5544
No 87
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=86.36 E-value=4.7 Score=46.33 Aligned_cols=105 Identities=20% Similarity=0.236 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHc-CCCcccEEEEee-hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCce
Q 008124 69 VESLLMFRDIIQSH-NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLV 145 (577)
Q Consensus 69 ~~~L~~f~~~~~~~-~v~~~~i~~vAT-sA~R~A~N~~~fl~~i~~~tGl~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~ 145 (577)
...|+..++.++.+ |-+.. .+|-| -|.=.. +....+...-+..|+++ ++|+...=|.+.| |.... .+...
T Consensus 115 a~iL~~lk~~ae~~~g~~v~--~~VItVPa~f~~-~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y-~~~~~---~~~~v 187 (627)
T PRK00290 115 AMILQKLKKDAEDYLGEKVT--EAVITVPAYFND-AQRQATKDAGKIAGLEVLRIINEPTAAALAY-GLDKK---GDEKI 187 (627)
T ss_pred HHHHHHHHHHHHHHhCCCCc--eEEEEECCCCCH-HHHHHHHHHHHHcCCceEEEecchHHHHHHh-hhccC---CCCEE
Confidence 34566666666554 43322 23333 221111 12223344445679995 6888888877766 33321 34568
Q ss_pred EEEEeCCCceEEEEeeCCe--EE---EEEEEehhHHHHHH
Q 008124 146 LSVDIGGGSTEFVIGKRGK--VV---FCESVNLGHVSLSE 180 (577)
Q Consensus 146 lviDIGGGStEl~~~~~~~--~~---~~~SlplG~vrl~e 180 (577)
+|+|+|||+|.+++++-+. +. .....++|..-+.+
T Consensus 188 lV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~ 227 (627)
T PRK00290 188 LVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQ 227 (627)
T ss_pred EEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHH
Confidence 9999999999999876332 21 11234566655544
No 88
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=86.33 E-value=10 Score=43.46 Aligned_cols=106 Identities=22% Similarity=0.275 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHc-CCCcccEEEEee-hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCc
Q 008124 68 SVESLLMFRDIIQSH-NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRL 144 (577)
Q Consensus 68 ~~~~L~~f~~~~~~~-~v~~~~i~~vAT-sA~R~A~N~~~fl~~i~~~tGl~i-~VIsg~eEA~l~~~gv~~~~~~~~~~ 144 (577)
....|+..++.++.+ |-+.. .+|-| -|.=. .+....+...-+..|+++ ++|+...=|.+.| |.-. . .+..
T Consensus 130 ~a~iL~~lk~~ae~~lg~~v~--~~VITVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-~~~~--~-~~~~ 202 (616)
T PRK05183 130 SAEILKALRQRAEETLGGELD--GAVITVPAYFD-DAQRQATKDAARLAGLNVLRLLNEPTAAAIAY-GLDS--G-QEGV 202 (616)
T ss_pred HHHHHHHHHHHHHHHhCCCcc--eEEEEECCCCC-HHHHHHHHHHHHHcCCCeEEEecchHHHHHHh-hccc--C-CCCE
Confidence 345667777766654 43222 33332 22111 122334455556789997 6888888888776 3322 1 2355
Q ss_pred eEEEEeCCCceEEEEee--CCeEE---EEEEEehhHHHHHH
Q 008124 145 VLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSE 180 (577)
Q Consensus 145 ~lviDIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~e 180 (577)
.+|+|+|||++.+++.+ ++.+. ....-.+|..-+.+
T Consensus 203 vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~ 243 (616)
T PRK05183 203 IAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDH 243 (616)
T ss_pred EEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHH
Confidence 89999999999999876 33321 11224566655544
No 89
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=86.32 E-value=0.85 Score=40.47 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEE
Q 008124 15 FASIDMGTSSFKLLIIRAYPNGKFLTI 41 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~~~~~~~l 41 (577)
+++|||||.++.+.|++....+.++++
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl 27 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVL 27 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEE
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEE
Confidence 589999999999999987544444444
No 90
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.01 E-value=0.62 Score=53.57 Aligned_cols=54 Identities=22% Similarity=0.141 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhc
Q 008124 398 DLEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFH 452 (577)
Q Consensus 398 ~r~LL~~Aa~LHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yh 452 (577)
++.+|..||++||||+-= ...|..-++-....-=.-.|++.+|..++|.+++.|
T Consensus 482 ~~elLylAaLfHDIaKGR-ggDHs~lGA~~a~~fc~~hGL~~~e~~lvaWLVe~H 535 (867)
T COG2844 482 KRELLYLAALFHDIAKGR-GGDHSILGAEDARRFCERHGLNSRETELVAWLVENH 535 (867)
T ss_pred ChhHHHHHHHHHHhhcCC-CCchHHhhHHHHHHHHHHcCCCHHHhHHHHHHHHHH
Confidence 467999999999999875 456677777776433236999999999999999988
No 91
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=86.00 E-value=0.7 Score=49.98 Aligned_cols=55 Identities=16% Similarity=0.076 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhccccc---------CCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccC
Q 008124 400 EYLEAACLLHNIGHFT---------SKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (577)
Q Consensus 400 ~LL~~Aa~LHdIG~~I---------~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhrk 454 (577)
..+.|||+|||+|+.. ++++|.+.|..++..--.=+.++.+.+..+..+++||..
T Consensus 247 l~lR~AaLlHDiGK~~t~~~~~~~~~~~gHe~~G~~~a~~i~~RLk~pn~~~~~~~~li~~H~~ 310 (417)
T PRK13298 247 IDIRFSYLCQFLGSMIPINQIKRNYKKIFFDKYAASLIKNLCKRFKIPSYIRNIAVLNTGFYFF 310 (417)
T ss_pred HHHHHHHHHhhhcCCCCCCccCCCCcccChhHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh
Confidence 4689999999999853 456777888877754422368999999999999999954
No 92
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=85.72 E-value=13 Score=34.76 Aligned_cols=129 Identities=18% Similarity=0.082 Sum_probs=81.8
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEee--
Q 008124 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT-- 94 (577)
Q Consensus 17 vIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT-- 94 (577)
.||||.+++++.+++.. | +++.+.+.++. .-.++.++.+.+.++++..... .. -..||.
T Consensus 1 gidig~~~i~~~l~d~~--g--~ii~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~---~~---gIgi~~pG 61 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLD--G--EIIYSESIPTP---------TSPEELLDALAELIERLLADYG---RS---GIGISVPG 61 (179)
T ss_dssp EEEEESSEEEEEEEETT--S--CEEEEEEEEHH---------SSHHHHHHHHHHHHHHHHHHHT---CE---EEEEEESS
T ss_pred CEEECCCEEEEEEECCC--C--CEEEEEEEECC---------CCHHHHHHHHHHHHHHHHhhcc---cc---cEEEeccc
Confidence 48999999999999864 4 35666655544 1135666666666776665433 21 122332
Q ss_pred -----------hhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCC
Q 008124 95 -----------AAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRG 163 (577)
Q Consensus 95 -----------sA~R~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~ 163 (577)
+..-.-.| -.+.+.+++.++++|.+.+.-.=+-+...=.-... ..++.+.+.+|-| +...++.+|
T Consensus 62 ~v~~~~g~i~~~~~~~~~~-~~l~~~l~~~~~~pv~i~Nd~~~~a~ae~~~~~~~--~~~~~~~l~ig~G-iG~~ii~~g 137 (179)
T PF00480_consen 62 IVDSEKGRIISSPNPGWEN-IPLKEELEERFGVPVIIENDANAAALAEYWFGAAK--DCDNFLYLYIGTG-IGAGIIING 137 (179)
T ss_dssp EEETTTTEEEECSSGTGTT-CEHHHHHHHHHTSEEEEEEHHHHHHHHHHHHSTTT--TTSSEEEEEESSS-EEEEEEETT
T ss_pred cCcCCCCeEEecCCCCccc-CCHHHHhhcccceEEEEecCCCcceeehhhcCccC--CcceEEEEEeecC-CCcceeccc
Confidence 22222233 45788999999999999988776555443222221 2245899999876 677778888
Q ss_pred eEEEE
Q 008124 164 KVVFC 168 (577)
Q Consensus 164 ~~~~~ 168 (577)
++...
T Consensus 138 ~i~~G 142 (179)
T PF00480_consen 138 KIYRG 142 (179)
T ss_dssp EEETT
T ss_pred ccccC
Confidence 87644
No 93
>PRK13318 pantothenate kinase; Reviewed
Probab=85.35 E-value=13 Score=37.65 Aligned_cols=128 Identities=13% Similarity=0.191 Sum_probs=68.1
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEee
Q 008124 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (577)
+-+||||-..+++.+++ ++. ++++.+.++.... +.+. .+..+.++++.++.+..++..++=
T Consensus 2 iL~IDIGnT~iK~al~d---~g~--i~~~~~~~t~~~~--------~~~~------~~~~l~~l~~~~~~~~~~i~~I~i 62 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE---GGK--LVAHWRISTDSRR--------TADE------YGVWLKQLLGLSGLDPEDITGIII 62 (258)
T ss_pred EEEEEECCCcEEEEEEE---CCE--EEEEEEEeCCCCC--------CHHH------HHHHHHHHHHHcCCCcccCceEEE
Confidence 45799999999999987 243 3444333321111 1222 223344555666653334555666
Q ss_pred hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHH-----------------HHHHhhhhccCCCCCCceEEEEeCCCceE
Q 008124 95 AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEA-----------------KFVYMGVLQFLPVFDRLVLSVDIGGGSTE 156 (577)
Q Consensus 95 sA~R~A~N~~~fl~~i~~~tGl~i-~VIsg~eEA-----------------~l~~~gv~~~~~~~~~~~lviDIGGGStE 156 (577)
+.|....+ +.+.+.++...+.++ -+.+ .++. .....|+....+ ++.+|+|.|.+-|=
T Consensus 63 ssVvp~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~gl~~~y~np~~lG~DR~a~~~aa~~~~~---~~~ivid~GTA~t~ 137 (258)
T PRK13318 63 SSVVPSVM-HSLERMCRKYFNIEPLVVVG-PGVKTGINIKVDNPKEVGADRIVNAVAAYELYG---GPLIVVDFGTATTF 137 (258)
T ss_pred EEecCchH-HHHHHHHHHHhCCCCeEEEC-CCcCCCCceecCChhhcchHHHHHHHHHHHHcC---CCEEEEEcCCceEE
Confidence 66664333 445555555444433 2222 1111 123333333332 36899999999997
Q ss_pred EEEeeCCeEE
Q 008124 157 FVIGKRGKVV 166 (577)
Q Consensus 157 l~~~~~~~~~ 166 (577)
=++-.+|+..
T Consensus 138 d~v~~~g~~~ 147 (258)
T PRK13318 138 DVVSAKGEYL 147 (258)
T ss_pred EEEcCCCcEE
Confidence 7665666554
No 94
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=84.87 E-value=7.4 Score=45.05 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHc-CCCcccEEEEee-hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCce
Q 008124 69 VESLLMFRDIIQSH-NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLV 145 (577)
Q Consensus 69 ~~~L~~f~~~~~~~-~v~~~~i~~vAT-sA~R~A~N~~~fl~~i~~~tGl~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~ 145 (577)
...|+..++.++.+ |.+.. .+|-| -|.=.. .....+...-+..|+++ ++|+...=|-+.| |... . .....
T Consensus 156 a~iL~~lk~~ae~~lg~~v~--~~VITVPa~f~~-~qR~a~~~Aa~~AGl~v~~li~EptAAAlay-~~~~--~-~~~~v 228 (663)
T PTZ00400 156 AFVLEKMKETAESYLGRKVK--QAVITVPAYFND-SQRQATKDAGKIAGLDVLRIINEPTAAALAF-GMDK--N-DGKTI 228 (663)
T ss_pred HHHHHHHHHHHHHHhCCCCc--eEEEEECCCCCH-HHHHHHHHHHHHcCCceEEEeCchHHHHHHh-cccc--C-CCcEE
Confidence 34566666666554 54322 33433 221111 12233344455679994 5888888777766 4322 1 23568
Q ss_pred EEEEeCCCceEEEEee--CCeEE---EEEEEehhHHHHHH
Q 008124 146 LSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSE 180 (577)
Q Consensus 146 lviDIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~e 180 (577)
+|+|+|||++.+++++ ++.+. .....++|..-+.+
T Consensus 229 lV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~ 268 (663)
T PTZ00400 229 AVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQ 268 (663)
T ss_pred EEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHH
Confidence 9999999999999876 55432 12233566655444
No 95
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=84.58 E-value=3.3 Score=46.42 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=45.4
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCcccE
Q 008124 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHT 89 (577)
Q Consensus 13 ~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i 89 (577)
+.+.+||+||.|+|..+++. +|+. +.....+...-......| +..++. .+.+++++++ ++++.++++.+|
T Consensus 3 ~~~lgID~GTts~Ka~l~d~--~G~~--l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~---~~~~~~~~~~~I 75 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDL--NGNQ--IAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQ---ALQKAGIPASDI 75 (520)
T ss_pred cEEEEEecCCCceEEEEECC--CCCE--EEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHH---HHHHcCCCccce
Confidence 36889999999999999974 4543 433333321111111122 344444 3445555544 444456665679
Q ss_pred EEEeehhhh
Q 008124 90 RAVATAAVR 98 (577)
Q Consensus 90 ~~vATsA~R 98 (577)
.+++.++.+
T Consensus 76 ~aI~~s~~~ 84 (520)
T PRK10939 76 AAVSATSMR 84 (520)
T ss_pred EEEEEECCc
Confidence 999877653
No 96
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=84.55 E-value=6.8 Score=44.49 Aligned_cols=74 Identities=24% Similarity=0.378 Sum_probs=45.4
Q ss_pred HHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEee--CCeEE---EEEEEehhHHHHH
Q 008124 106 FVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLS 179 (577)
Q Consensus 106 fl~~i~~~tGl~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~ 179 (577)
.+...-+..|+++ ++|+..+=|-+.| +..... .....+|+|+|||++.+++++ ++.+. ...+-.+|...+.
T Consensus 153 ~~~~Aa~~agl~~~~li~Ep~Aaa~~y-~~~~~~--~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D 229 (602)
T PF00012_consen 153 ALRDAAELAGLNVLRLINEPTAAALAY-GLERSD--KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFD 229 (602)
T ss_dssp HHHHHHHHTT-EEEEEEEHHHHHHHHT-TTTSSS--SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHH
T ss_pred cccccccccccccceeecccccccccc-cccccc--cccceeccccccceEeeeehhcccccccccccccccccccceec
Confidence 3444445689987 5777665554443 433322 345689999999999998865 55432 2334567776665
Q ss_pred Hhh
Q 008124 180 EKF 182 (577)
Q Consensus 180 e~f 182 (577)
+.+
T Consensus 230 ~~l 232 (602)
T PF00012_consen 230 EAL 232 (602)
T ss_dssp HHH
T ss_pred cee
Confidence 543
No 97
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=84.52 E-value=6.5 Score=44.83 Aligned_cols=87 Identities=21% Similarity=0.264 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHc-CCCcccEEEEee-hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCce
Q 008124 69 VESLLMFRDIIQSH-NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLV 145 (577)
Q Consensus 69 ~~~L~~f~~~~~~~-~v~~~~i~~vAT-sA~R~A~N~~~fl~~i~~~tGl~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~ 145 (577)
...|+..++.+..+ |-+.. .+|-| -|.=. .+....+...-+..|+++ ++|+...=|-+.| |.... ..+...
T Consensus 112 a~~L~~l~~~a~~~~~~~v~--~~VItVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y-~~~~~--~~~~~v 185 (595)
T TIGR02350 112 AMILQKLKKDAEAYLGEKVT--EAVITVPAYFN-DAQRQATKDAGKIAGLEVLRIINEPTAAALAY-GLDKS--KKDEKI 185 (595)
T ss_pred HHHHHHHHHHHHHHhCCCCC--eEEEEECCCCC-HHHHHHHHHHHHHcCCceEEEecchHHHHHHH-hhccc--CCCcEE
Confidence 34566666666554 43322 22332 11111 122233444455679996 5788887777766 43221 124568
Q ss_pred EEEEeCCCceEEEEee
Q 008124 146 LSVDIGGGSTEFVIGK 161 (577)
Q Consensus 146 lviDIGGGStEl~~~~ 161 (577)
+|+|+|||+|.+++.+
T Consensus 186 lV~D~Gggt~dvsv~~ 201 (595)
T TIGR02350 186 LVFDLGGGTFDVSILE 201 (595)
T ss_pred EEEECCCCeEEEEEEE
Confidence 9999999999999876
No 98
>PRK13410 molecular chaperone DnaK; Provisional
Probab=84.31 E-value=11 Score=43.64 Aligned_cols=95 Identities=18% Similarity=0.246 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHc-CCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhc
Q 008124 59 SISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQ 136 (577)
Q Consensus 59 ~Ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i-~VIsg~eEA~l~~~gv~~ 136 (577)
.++++.+ +...|+..++.+..+ |.+..+ .+++--|.=...-++...+. -+..|+++ ++|+...=|-+.| |.-.
T Consensus 109 ~~speel--~a~iL~~lk~~ae~~lg~~v~~-~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay-g~~~ 183 (668)
T PRK13410 109 EFAPEEL--SAMILRKLADDASRYLGEPVTG-AVITVPAYFNDSQRQATRDA-GRIAGLEVERILNEPTAAALAY-GLDR 183 (668)
T ss_pred EEcHHHH--HHHHHHHHHHHHHHHhCCCcce-EEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHh-cccc
Confidence 3455433 334566666666554 433222 22322221111122334444 45679995 5899988888876 3322
Q ss_pred cCCCCCCceEEEEeCCCceEEEEee
Q 008124 137 FLPVFDRLVLSVDIGGGSTEFVIGK 161 (577)
Q Consensus 137 ~~~~~~~~~lviDIGGGStEl~~~~ 161 (577)
. .+...+|+|+|||++.+++++
T Consensus 184 --~-~~~~vlV~DlGgGT~Dvsv~~ 205 (668)
T PRK13410 184 --S-SSQTVLVFDLGGGTFDVSLLE 205 (668)
T ss_pred --C-CCCEEEEEECCCCeEEEEEEE
Confidence 1 235689999999999999876
No 99
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=83.17 E-value=4.8 Score=44.54 Aligned_cols=85 Identities=14% Similarity=0.157 Sum_probs=50.6
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCcccEE
Q 008124 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSI-STQSQARSVESLLMFRDIIQSHNISRDHTR 90 (577)
Q Consensus 12 ~~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~L-s~e~i~r~~~~L~~f~~~~~~~~v~~~~i~ 90 (577)
.++++.||+||.|.|..|++.. +|.. +.....+++-...-..-..- +.+-.+..++||+.-.+.+...+.....+.
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~-~~e~--l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~ 81 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAK-NGEL--LSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGAT 81 (516)
T ss_pred cceEEEEEcCCCceEEEEEecC-CCcc--ceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccE
Confidence 4789999999999999999865 3432 22222222222111111122 346667777888887777766665555566
Q ss_pred EEeehhhhh
Q 008124 91 AVATAAVRA 99 (577)
Q Consensus 91 ~vATsA~R~ 99 (577)
+++..--|+
T Consensus 82 ~igv~~qr~ 90 (516)
T KOG2517|consen 82 CIGVVNQRE 90 (516)
T ss_pred EEEEEecCC
Confidence 665544444
No 100
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=83.07 E-value=3.8 Score=43.18 Aligned_cols=35 Identities=37% Similarity=0.516 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhccc
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH 413 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~ 413 (577)
.|+.-|+.+|..+...|. + + ..++++||++||||.
T Consensus 65 ~Hsl~V~~iar~~~~~l~----~-----------~---~~l~~aaaL~HDiGh 99 (336)
T PRK01286 65 THTLEVAQIARTIARALR----L-----------N---EDLTEAIALGHDLGH 99 (336)
T ss_pred HHHHHHHHHHHHHHHHhC----C-----------C---HHHHHHHHHHhcCCC
Confidence 799999999999877653 1 1 268999999999995
No 101
>PRK13411 molecular chaperone DnaK; Provisional
Probab=82.86 E-value=9.7 Score=44.01 Aligned_cols=94 Identities=20% Similarity=0.278 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCCcccEEEEee-hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhc
Q 008124 60 ISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQ 136 (577)
Q Consensus 60 Ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vAT-sA~R~A~N~~~fl~~i~~~tGl~i-~VIsg~eEA~l~~~gv~~ 136 (577)
++++.+- ...|+..++.++.+ |.+.. .+|-| -|.=. ......+...-+..|+++ ++|+...=|-+.| |...
T Consensus 108 ~~peei~--a~iL~~lk~~ae~~lg~~v~--~~VITVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y-~~~~ 181 (653)
T PRK13411 108 YTPQEIS--AMILQKLKQDAEAYLGEPVT--QAVITVPAYFT-DAQRQATKDAGTIAGLEVLRIINEPTAAALAY-GLDK 181 (653)
T ss_pred ECHHHHH--HHHHHHHHHHHHHHhCCCcc--eEEEEECCCCC-cHHHHHHHHHHHHcCCCeEEEecchHHHHHHh-cccc
Confidence 4554443 23466667666555 43322 22333 12111 122333444555679995 6888888777766 3322
Q ss_pred cCCCCCCceEEEEeCCCceEEEEee
Q 008124 137 FLPVFDRLVLSVDIGGGSTEFVIGK 161 (577)
Q Consensus 137 ~~~~~~~~~lviDIGGGStEl~~~~ 161 (577)
. ..+...+|+|+|||++.+++.+
T Consensus 182 ~--~~~~~vlV~DlGgGT~dvsi~~ 204 (653)
T PRK13411 182 Q--DQEQLILVFDLGGGTFDVSILQ 204 (653)
T ss_pred c--CCCCEEEEEEcCCCeEEEEEEE
Confidence 1 1245589999999999998865
No 102
>PLN03184 chloroplast Hsp70; Provisional
Probab=82.08 E-value=13 Score=43.14 Aligned_cols=70 Identities=20% Similarity=0.366 Sum_probs=44.5
Q ss_pred HHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCC--eEE---EEEEEehhHHHHHH
Q 008124 107 VECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRG--KVV---FCESVNLGHVSLSE 180 (577)
Q Consensus 107 l~~i~~~tGl~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~--~~~---~~~SlplG~vrl~e 180 (577)
+...-+..|+++ ++|+...=|.+.| |.-. . .+...+|+|+|||++.+++.+-+ .+. .....++|..-+.+
T Consensus 191 ~~~Aa~~AGl~v~~li~EPtAAAlay-g~~~--~-~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~ 266 (673)
T PLN03184 191 TKDAGRIAGLEVLRIINEPTAASLAY-GFEK--K-SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDK 266 (673)
T ss_pred HHHHHHHCCCCeEEEeCcHHHHHHHh-hccc--C-CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHH
Confidence 344455679995 5788887777766 3321 1 23568999999999999887633 221 12235677655544
No 103
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=81.26 E-value=3.1 Score=36.88 Aligned_cols=33 Identities=24% Similarity=0.518 Sum_probs=25.5
Q ss_pred eEEEEeCCCceEEEEeeCCeEEEEEEEehhHHH
Q 008124 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVS 177 (577)
Q Consensus 145 ~lviDIGGGStEl~~~~~~~~~~~~SlplG~vr 177 (577)
.+++|||++.|-+++++.+...+...+|+|...
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~ 33 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVP 33 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES-----
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEeccc
Confidence 368999999999999999999999999999543
No 104
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=80.79 E-value=1.5 Score=45.74 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCC--------------chhhhHH
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKG--------------YHKQSCH 426 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~~~--------------h~~Hs~y 426 (577)
.|.-.|+++|..+.+. +. .-+|.||-++|+|||||+-..++. |---++.
T Consensus 162 eHtl~v~~~~~~l~~~----y~-------------~~n~dll~agalLHDiGKi~E~~~~~~~~yT~eG~LlGHi~lg~~ 224 (314)
T PRK13480 162 YHVVSMLRLAKSICDL----YP-------------SLNKDLLYAGIILHDLGKVIELSGPVSTTYTLEGNLLGHISIMVN 224 (314)
T ss_pred HHHHHHHHHHHHHHHh----cc-------------ccCHHHHHHHHHHHHhhhHHHhcCCCccCccccCEeccHHHHHHH
Confidence 5778888888876432 21 124689999999999998655443 2222444
Q ss_pred HHHcC-CCCCCCCHHHHHHH-HHHHHhccC
Q 008124 427 IIMNG-DHLYGYSTDEIKLI-ALLTRFHRK 454 (577)
Q Consensus 427 iI~ns-~~l~G~s~~E~~~i-A~i~~yhrk 454 (577)
+|... . -.|+..++...| -.|.++|++
T Consensus 225 ~i~~~~~-~l~~~~e~~~~L~H~ILSHHG~ 253 (314)
T PRK13480 225 EIAKAAD-ELQIDGEEVLILQHMVLSHHGK 253 (314)
T ss_pred HHHHHHH-HcCCCHHHHHHHHhhhhccCCc
Confidence 44321 1 136665555444 446666654
No 105
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=80.70 E-value=6.5 Score=32.95 Aligned_cols=84 Identities=13% Similarity=0.271 Sum_probs=47.4
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEee
Q 008124 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (577)
+-+||+|...+++.+.+- +|.+ +...+.+.. . + .. +.++.+.++++++.+ ...+++.
T Consensus 3 ilgiD~Ggt~i~~a~~d~--~g~~--~~~~~~~~~--~----~-------~~---~~~~~l~~~i~~~~~---~~i~Ig~ 59 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDE--TGKL--ADPLEVIPR--T----N-------KE---ADAARLKKLIKKYQP---DLIVIGL 59 (99)
T ss_pred EEEEccCCCeEEEEEECC--CCCE--ecCEEEEEe--c----C-------cc---hHHHHHHHHHHHhCC---CEEEEeC
Confidence 568999999999999853 4443 333333322 0 0 11 123333444455554 3456762
Q ss_pred h-----hhhhcCChHHHHHHHHHHcCCcEEEeC
Q 008124 95 A-----AVRAAENKDEFVECVREKVGFEVDVLT 122 (577)
Q Consensus 95 s-----A~R~A~N~~~fl~~i~~~tGl~i~VIs 122 (577)
. .+...-+ ..|.+.+++.+|+++.+.+
T Consensus 60 pg~v~g~~~~~~~-~~l~~~l~~~~~~pv~~~n 91 (99)
T smart00732 60 PLNMNGTASRETE-EAFAELLKERFNLPVVLVD 91 (99)
T ss_pred CcCCCCCcCHHHH-HHHHHHHHHhhCCcEEEEe
Confidence 2 1121123 6777888888899988765
No 106
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=80.54 E-value=9 Score=43.73 Aligned_cols=88 Identities=20% Similarity=0.335 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHc-CCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCce
Q 008124 68 SVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLV 145 (577)
Q Consensus 68 ~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i-~VIsg~eEA~l~~~gv~~~~~~~~~~~ 145 (577)
+-..|+.+++.++.+ |-+.. .+|-|=-..--.+....+...-+..|+++ ++|+...=|-+.| |... . .+...
T Consensus 122 ~a~iL~~lk~~ae~~lg~~v~--~aVITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-~~~~--~-~~~~v 195 (595)
T PRK01433 122 AAEIFIYLKNQAEEQLKTNIT--KAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAY-GLNK--N-QKGCY 195 (595)
T ss_pred HHHHHHHHHHHHHHHhCCCcc--eEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHH-hccc--C-CCCEE
Confidence 345677777777655 43322 34444221111234445555566789996 5888888888776 4322 1 23458
Q ss_pred EEEEeCCCceEEEEee
Q 008124 146 LSVDIGGGSTEFVIGK 161 (577)
Q Consensus 146 lviDIGGGStEl~~~~ 161 (577)
+|+|+|||++.+++++
T Consensus 196 lV~DlGGGT~DvSi~~ 211 (595)
T PRK01433 196 LVYDLGGGTFDVSILN 211 (595)
T ss_pred EEEECCCCcEEEEEEE
Confidence 9999999999999876
No 107
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=80.18 E-value=64 Score=33.18 Aligned_cols=132 Identities=21% Similarity=0.205 Sum_probs=74.0
Q ss_pred EEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEeeh
Q 008124 16 ASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATA 95 (577)
Q Consensus 16 AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATs 95 (577)
-.|||||..+++++.+ +++++.... . ++.. ++..++-|+ +....++. ...+.+|-
T Consensus 3 iGiDiGgT~~Kiv~~~--~~~~~~f~~---~---------~~~~-----~~~~~~~l~---~~~~~~~~---~~~i~~TG 57 (279)
T TIGR00555 3 IGIDIGGTLIKVVYEE--PKGRRKFKT---F---------ETTN-----IDKFIEWLK---NQIHRHSR---ITTLCATG 57 (279)
T ss_pred EEEEeCcceEEEEEEc--CCCcEEEEE---e---------eccc-----HHHHHHHHH---HHHHhhcC---ceEEEEEC
Confidence 5799999999999975 244432111 1 1111 333334443 33322222 23445553
Q ss_pred hhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCC----CCCceEEEEeCCCceEEEEeeCCeEEEEEEE
Q 008124 96 AVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPV----FDRLVLSVDIGGGSTEFVIGKRGKVVFCESV 171 (577)
Q Consensus 96 A~R~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~----~~~~~lviDIGGGStEl~~~~~~~~~~~~Sl 171 (577)
..+-.|.+.++...|+++. -.+|-.-...|+..-++. +-.+.+++.||.| |-+..+++.+..+.---
T Consensus 58 -----gGa~k~~~~~~~~~~v~~~---k~dE~~a~~~g~~~ll~~~~~~~~~p~llvnIGsG-vSi~~v~~~~~~Rv~Gt 128 (279)
T TIGR00555 58 -----GGAFKFAELIYESAGIQLH---KFDEFDALIQGLNYLLKEEPKDDIYPYLLVNIGTG-TSILYVDGDNYERVGGT 128 (279)
T ss_pred -----CcHHHHHHHhccccCCccc---chhHHHHHHHHHHHHhhcccCCCCCceEEEEecCC-eEEEEEcCccEEEEcCc
Confidence 2334566777777665542 334555555566543331 2246899999887 88888876666555555
Q ss_pred ehhHHHHHHh
Q 008124 172 NLGHVSLSEK 181 (577)
Q Consensus 172 plG~vrl~e~ 181 (577)
.+|--++-..
T Consensus 129 ~iGGGTf~GL 138 (279)
T TIGR00555 129 SLGGGTFLGL 138 (279)
T ss_pred cccHHHHHHH
Confidence 6776666543
No 108
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=80.16 E-value=2.1 Score=45.97 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhccc--------------ccC---CCCchhh
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH--------------FTS---KKGYHKQ 423 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~--------------~I~---~~~h~~H 423 (577)
.|+.-|+.+|..|...+..... ... ........++++||++||||. +-. ...|..+
T Consensus 41 tHslev~~i~r~~~~~l~~~~~--~~~-----~~~~~~~~l~~~a~L~HDiGhpPfgH~gE~~l~~~~~~~g~~f~~n~q 113 (381)
T TIGR01353 41 THSLEVAQVGRSIANLIGLRYD--LEL-----EELGPFERLAETACLAHDIGNPPFGHAGERALNDWMREYGPGFEGNAQ 113 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc--ccc-----ccccccHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhcCCCCChHHH
Confidence 8999999999999888754211 000 012235579999999999994 222 3466777
Q ss_pred hHHHHHcCCC----CCCCCHHHHHHHHHHHHhcc
Q 008124 424 SCHIIMNGDH----LYGYSTDEIKLIALLTRFHR 453 (577)
Q Consensus 424 s~yiI~ns~~----l~G~s~~E~~~iA~i~~yhr 453 (577)
|+-||..-+. ..|++- -...++.++.|-.
T Consensus 114 ~~ri~~~Le~~~~~~~GLNL-T~~tL~~i~KYp~ 146 (381)
T TIGR01353 114 TFRILTTLEKRRRAKGGLNL-TWRTLAGILKYPR 146 (381)
T ss_pred HHHHHHHHhhccCCcCCcCC-CHHHHHHHHcCCc
Confidence 8888765321 235553 3455666666653
No 109
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=79.11 E-value=13 Score=42.40 Aligned_cols=96 Identities=15% Similarity=0.207 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhcc
Q 008124 59 SISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQF 137 (577)
Q Consensus 59 ~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~-i~VIsg~eEA~l~~~gv~~~ 137 (577)
.++++.+. ...|+.+++.++.+--...+ .+|-|=-.--......-....-+..|++ +++|+...=|-|.| |.-..
T Consensus 94 ~~~~eeis--a~~L~~lk~~ae~~lg~~v~-~~VItVPayF~d~qR~at~~A~~iaGl~vlrlinEPtAAAlay-g~~~~ 169 (579)
T COG0443 94 KYTPEEIS--AMILTKLKEDAEAYLGEKVT-DAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAY-GLDKG 169 (579)
T ss_pred eeCHHHHH--HHHHHHHHHHHHHhhCCCcc-eEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHh-HhccC
Confidence 45555443 45567777777766322222 4455522222222234445555567877 67899888888887 33322
Q ss_pred CCCCCCceEEEEeCCCceEEEEee
Q 008124 138 LPVFDRLVLSVDIGGGSTEFVIGK 161 (577)
Q Consensus 138 ~~~~~~~~lviDIGGGStEl~~~~ 161 (577)
.+...+|+|+|||++.+++.+
T Consensus 170 ---~~~~vlV~DlGGGTfDvSll~ 190 (579)
T COG0443 170 ---KEKTVLVYDLGGGTFDVSLLE 190 (579)
T ss_pred ---CCcEEEEEEcCCCCEEEEEEE
Confidence 345689999999999999876
No 110
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=79.06 E-value=8.4 Score=42.47 Aligned_cols=77 Identities=12% Similarity=0.280 Sum_probs=44.2
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCcccEE
Q 008124 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTR 90 (577)
Q Consensus 14 ~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i~ 90 (577)
.+.+||+||.|+|..+++. +|++ +...+.+..........| +.+++. .+.+++++++... . +++.+|+
T Consensus 2 ~ilgiD~GTss~K~~l~d~--~g~~--va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~---~--~~~~~I~ 72 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR--QGKI--VASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINS---E--LTEKHIR 72 (465)
T ss_pred eEEEEecCCCcEEEEEEcC--CCCE--EEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHh---h--cChhceE
Confidence 4678999999999999984 5654 333333322111111222 345555 3455555665542 2 3335689
Q ss_pred EEeehhhhh
Q 008124 91 AVATAAVRA 99 (577)
Q Consensus 91 ~vATsA~R~ 99 (577)
+|+.++.+.
T Consensus 73 aI~~s~~~~ 81 (465)
T TIGR02628 73 GIAVTTFGV 81 (465)
T ss_pred EEEEecccc
Confidence 998876544
No 111
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=78.70 E-value=27 Score=35.24 Aligned_cols=127 Identities=20% Similarity=0.283 Sum_probs=73.6
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHH-HHHHHHHcCCCccc--EEEEe
Q 008124 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLM-FRDIIQSHNISRDH--TRAVA 93 (577)
Q Consensus 17 vIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~-f~~~~~~~~v~~~~--i~~vA 93 (577)
.||.|+.+++.++++. +|. ++.+.. .....+....++.+.+.|+. +.++++..+.+..+ ..+++
T Consensus 2 GIDgGgTkt~~vl~d~--~g~--il~~~~---------~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g 68 (271)
T PF01869_consen 2 GIDGGGTKTKAVLVDE--NGN--ILGRGK---------GGGANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIG 68 (271)
T ss_dssp EEEECSSEEEEEEEET--TSE--EEEEEE---------ES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred EEeeChheeeeEEEeC--CCC--EEEEEE---------eCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeee
Confidence 5999999999999974 343 332221 11122233334444444332 34444555655333 44567
Q ss_pred ehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEE
Q 008124 94 TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (577)
Q Consensus 94 TsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~ 168 (577)
++.+=.+.+..+|...+... ++.+.+.-.- ...+. .. ++++++=-|.||.=+.+-++|+....
T Consensus 69 ~aG~~~~~~~~~~~~~~~~~---~v~~~~Da~~---al~~~---~~---~~giv~I~GTGS~~~~~~~~g~~~r~ 131 (271)
T PF01869_consen 69 AAGYGRAGDEQEFQEEIVRS---EVIVVNDAAI---ALYGA---TA---EDGIVVIAGTGSIAYGRDRDGRVIRF 131 (271)
T ss_dssp EEEEEETTTTTHHHHHHHHH---EEEEEEHHHH---HHHHH---ST---SSEEEEEESSSEEEEEEETTSEEEEE
T ss_pred EeeecCcccccchhhcceEE---EEEEEHHHHH---HhCCC---CC---CcEEEEEcCCCceEEEEEcCCcEEEe
Confidence 77776777776777666655 7777776432 22222 22 23677777888888887767876543
No 112
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=78.66 E-value=52 Score=33.95 Aligned_cols=130 Identities=18% Similarity=0.201 Sum_probs=79.5
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEE--EEee
Q 008124 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTR--AVAT 94 (577)
Q Consensus 17 vIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~--~vAT 94 (577)
.||||.+.+++.+++.. |. ++.+.+.+. . .-.++.++.+.+.+++|.+. ++.+..++. .||+
T Consensus 2 gidig~t~~~~~l~d~~--g~--i~~~~~~~~------~---~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~gIgva~ 65 (318)
T TIGR00744 2 GVDIGGTTIKLGVVDEE--GN--ILSKWKVPT------D---TTPETIVDAIASAVDSFIQH---IAKVGHEIVAIGIGA 65 (318)
T ss_pred EEEeCCCEEEEEEECCC--CC--EEEEEEeCC------C---CCHHHHHHHHHHHHHHHHHh---cCCCccceEEEEEec
Confidence 68999999999998753 43 344433321 1 11456677777778777653 333322333 3444
Q ss_pred hhhhh--------cC----ChHHHHHHHHHHcCCcEEEeChHHHHHHHHh--hhhccCCCCCCceEEEEeCCCceEEEEe
Q 008124 95 AAVRA--------AE----NKDEFVECVREKVGFEVDVLTGEQEAKFVYM--GVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (577)
Q Consensus 95 sA~R~--------A~----N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~--gv~~~~~~~~~~~lviDIGGGStEl~~~ 160 (577)
...=+ +. +.-.+.+.+++++|++|-+.+.-.=+-+.-. |... ..++.+++.+|.|. -..++
T Consensus 66 pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~~~alaE~~~g~~~----~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 66 PGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLPVVVENDANAAALGEYKKGAGK----GARDVICITLGTGL-GGGII 140 (318)
T ss_pred cccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCCEEEechHHHHHHHHHHhcccC----CCCcEEEEEeCCcc-EEEEE
Confidence 43221 11 2234778899999999998887666555332 2111 23468999999887 55666
Q ss_pred eCCeEEE
Q 008124 161 KRGKVVF 167 (577)
Q Consensus 161 ~~~~~~~ 167 (577)
.+|++..
T Consensus 141 ~~G~~~~ 147 (318)
T TIGR00744 141 INGEIRH 147 (318)
T ss_pred ECCEEee
Confidence 7777764
No 113
>PRK00047 glpK glycerol kinase; Provisional
Probab=78.29 E-value=6.3 Score=43.84 Aligned_cols=77 Identities=16% Similarity=0.270 Sum_probs=44.5
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHHH-HHHHHHHHHHHHHHHHcCCCcccE
Q 008124 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQSQ-ARSVESLLMFRDIIQSHNISRDHT 89 (577)
Q Consensus 13 ~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g--~Ls~e~i-~r~~~~L~~f~~~~~~~~v~~~~i 89 (577)
+.+..||+||.|+|..+++. +|+. +.....++.+ .....| +.+++.+ +.++++++ +++++.++++.+|
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~--~g~~--~~~~~~~~~~--~~~~~g~~e~d~~~~~~~~~~~~~---~~~~~~~~~~~~I 75 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDH--DGNI--VSVAQKEFTQ--IFPQPGWVEHDPNEIWASQLSVIA---EALAKAGISPDQI 75 (498)
T ss_pred CEEEEEecCCCceEEEEECC--CCCE--EEEEeeeccc--cCCCCCeEeeCHHHHHHHHHHHHH---HHHHHcCCChhHe
Confidence 36788999999999999974 4543 4333333322 111223 3344443 33344444 4455567665678
Q ss_pred EEEeehhhh
Q 008124 90 RAVATAAVR 98 (577)
Q Consensus 90 ~~vATsA~R 98 (577)
.+|+-++.+
T Consensus 76 ~~Igis~~~ 84 (498)
T PRK00047 76 AAIGITNQR 84 (498)
T ss_pred eEEEEecCc
Confidence 888866653
No 114
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=76.36 E-value=6.6 Score=42.88 Aligned_cols=103 Identities=17% Similarity=0.276 Sum_probs=64.2
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEE
Q 008124 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (577)
Q Consensus 12 ~~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (577)
.+++.+||-|+.|.|..|++- +|++ +....+. +-+-..+.|-.-.++.+---.++.-.++.+...++++.+|.+
T Consensus 4 ~~yIlAiDqGTTssRaivfd~--~g~i--va~~q~e--~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~iaa 77 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE--DGNI--VAIAQRE--FTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEIAA 77 (499)
T ss_pred ccEEEEEecCCcceeEEEECC--CCCc--hhhhhhh--hhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccceEE
Confidence 467999999999999999964 3443 3222222 112233446555555555555555556666677888888888
Q ss_pred Ee-----------------------------ehhhhhcCChHHHHHHHHHHcCCcEEE
Q 008124 92 VA-----------------------------TAAVRAAENKDEFVECVREKVGFEVDV 120 (577)
Q Consensus 92 vA-----------------------------TsA~R~A~N~~~fl~~i~~~tGl~i~V 120 (577)
+| |+.+=+--+.+...+.|+++||+.++-
T Consensus 78 IGITNQRETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~g~~~~i~~kTGL~~dp 135 (499)
T COG0554 78 IGITNQRETTVVWDKETGKPIYNAIVWQDRRTADICEELKADGYEERIREKTGLVLDP 135 (499)
T ss_pred EEeeccceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhcchhhhhhhhcCCccCC
Confidence 87 333333333345667788889988753
No 115
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=76.32 E-value=5.3 Score=41.75 Aligned_cols=62 Identities=29% Similarity=0.386 Sum_probs=37.3
Q ss_pred EEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeE--EEE-EEEehhHHHHHHhhc
Q 008124 118 VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKV--VFC-ESVNLGHVSLSEKFG 183 (577)
Q Consensus 118 i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~--~~~-~SlplG~vrl~e~f~ 183 (577)
++|+...-=|.+.++.- +. ..+..+|+||||+.|.+..+.++.. ... .+.++|...+.+...
T Consensus 143 V~V~PQ~~~A~~~~~~~---~~-~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~ 207 (318)
T PF06406_consen 143 VEVFPQSVGAVFDALMD---LD-EDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIA 207 (318)
T ss_dssp EEEEESSHHHHHHHHHT---S--TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHH
T ss_pred EEEEcccHHHHHHHHHh---hc-ccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHH
Confidence 44554444455555433 22 2245899999999999999887532 222 235789998888653
No 116
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=76.19 E-value=18 Score=38.46 Aligned_cols=137 Identities=18% Similarity=0.126 Sum_probs=74.7
Q ss_pred CCCceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccE
Q 008124 10 IPQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHT 89 (577)
Q Consensus 10 ~~~~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i 89 (577)
++...+..||.||.+.++++.+- +. .+++.+.. ...+ .+. +.+++++-.+ ..+...++|
T Consensus 132 ~~~~~~LGID~GSTtTK~VLm~d---~~-~I~~~~~~---~t~g-------~p~----~~~~l~~~le---~l~~~~~~I 190 (396)
T COG1924 132 YQGMYTLGIDSGSTTTKAVLMED---GK-EILYGFYV---STKG-------RPI----AEKALKEALE---ELGEKLEEI 190 (396)
T ss_pred hcCcEEEEEecCCcceeEEEEeC---CC-eEEEEEEE---cCCC-------Chh----HHHHHHHHHH---HcccChhee
Confidence 34557899999999999999863 33 33433321 1222 111 2333333322 233321233
Q ss_pred EE-EeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEE
Q 008124 90 RA-VATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (577)
Q Consensus 90 ~~-vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~ 168 (577)
-. ..|-==|+.-+...+.|.+ ..|----+.|+....|..+ .|+||||-=+-.+..++|.+...
T Consensus 191 ~~~~~TGYGR~~v~~~~~aD~~-------------~~Ei~ah~kgA~~f~p~~d---tIiDIGGQD~K~i~i~dG~v~df 254 (396)
T COG1924 191 LGLGVTGYGRNLVGAALGADKV-------------VVEISAHAKGARYFAPDVD---TVIDIGGQDSKVIKLEDGKVDDF 254 (396)
T ss_pred eeeeeecccHHHhhhhhcCCcc-------------eeeeehhHHHHHHhCCCCc---EEEEecCcceeEEEEeCCeeeee
Confidence 33 3444334433333333332 2344456778887666322 99999999999999999987522
Q ss_pred ---EEEehhHHHHHHhhc
Q 008124 169 ---ESVNLGHVSLSEKFG 183 (577)
Q Consensus 169 ---~SlplG~vrl~e~f~ 183 (577)
.--.=|+-|+.|.+-
T Consensus 255 ~mN~~CAAGtGrFLE~~A 272 (396)
T COG1924 255 TMNDKCAAGTGRFLEVIA 272 (396)
T ss_pred EeccccccccchHHHHHH
Confidence 111335556666553
No 117
>PRK09698 D-allose kinase; Provisional
Probab=74.84 E-value=88 Score=32.02 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=78.5
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEE
Q 008124 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (577)
Q Consensus 13 ~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (577)
..+..||||...+++.+++.. |. ++.+.+.++. ...+++.++...+.+++|.+... ..+ .-.+|
T Consensus 4 ~~~lgidig~t~i~~~l~d~~--g~--i~~~~~~~~~--------~~~~~~~~~~l~~~i~~~~~~~~-~~i---~gigi 67 (302)
T PRK09698 4 NVVLGIDMGGTHIRFCLVDAE--GE--ILHCEKKRTA--------EVIAPDLVSGLGEMIDEYLRRFN-ARC---HGIVM 67 (302)
T ss_pred cEEEEEEcCCcEEEEEEEcCC--CC--EEEEEEeCCc--------cccchHHHHHHHHHHHHHHHHcC-CCe---eEEEE
Confidence 457889999999999998763 43 3544433321 11244557777777777765321 111 12344
Q ss_pred eehhh--------hhcCC-------hHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEE
Q 008124 93 ATAAV--------RAAEN-------KDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEF 157 (577)
Q Consensus 93 ATsA~--------R~A~N-------~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl 157 (577)
|+... ....| .-.+.+.+++.+|++|.+.+.-.=+-+.-.- .... ...+.+.+.+|.| +--
T Consensus 68 a~pG~vd~~~g~i~~~~~~~~~~~~~~~l~~~l~~~~~~pv~v~NDa~aaa~~E~~-~~~~--~~~~~~~v~lgtG-IG~ 143 (302)
T PRK09698 68 GFPALVSKDRRTVISTPNLPLTALDLYDLADKLENTLNCPVFFSRDVNLQLLWDVK-ENNL--TQQLVLGAYLGTG-MGF 143 (302)
T ss_pred eCCcceeCCCCEEEecCCCCccccccCCHHHHHHHHhCCCEEEcchHhHHHHHHHH-hcCC--CCceEEEEEecCc-eEE
Confidence 44332 11222 2246778888999999998876544332211 1111 2235788888866 444
Q ss_pred EEeeCCeEEEE
Q 008124 158 VIGKRGKVVFC 168 (577)
Q Consensus 158 ~~~~~~~~~~~ 168 (577)
.+.-+|++...
T Consensus 144 giv~~G~~~~G 154 (302)
T PRK09698 144 AVWMNGAPWTG 154 (302)
T ss_pred EEEECCEEeeC
Confidence 56667776543
No 118
>PRK04123 ribulokinase; Provisional
Probab=73.94 E-value=15 Score=41.37 Aligned_cols=81 Identities=9% Similarity=0.033 Sum_probs=47.3
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeecc----CCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCC
Q 008124 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGR----DLSSSC--SISTQS-QARSVESLLMFRDIIQSHNIS 85 (577)
Q Consensus 13 ~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~----~~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~ 85 (577)
+.+.+||+||.|+|..+++.. +|.+ +.....+..... .....| +..++. .+.+++++++- ++..+++
T Consensus 3 ~~~lgiD~GTts~Ka~l~d~~-~g~~--~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~---~~~~~~~ 76 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVDCA-TGEE--LATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAV---LKEAGVD 76 (548)
T ss_pred cEEEEEecCCCceEEEEEECC-CCcE--eEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHH---HHHcCCC
Confidence 367899999999999999742 4543 333333222111 112223 233444 55566666553 4445665
Q ss_pred cccEEEEeehhhhh
Q 008124 86 RDHTRAVATAAVRA 99 (577)
Q Consensus 86 ~~~i~~vATsA~R~ 99 (577)
+.+|.+++-++.+.
T Consensus 77 ~~~I~aIgis~~~~ 90 (548)
T PRK04123 77 PAAVVGIGVDFTGS 90 (548)
T ss_pred hhhEEEEEEecccc
Confidence 56799999877654
No 119
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=73.79 E-value=11 Score=42.30 Aligned_cols=79 Identities=11% Similarity=0.022 Sum_probs=43.5
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeec---cCCC------cCC--CCCHHHH-HHHHHHHHHHHHHHHH
Q 008124 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILG---RDLS------SSC--SISTQSQ-ARSVESLLMFRDIIQS 81 (577)
Q Consensus 14 ~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg---~~~~------~~g--~Ls~e~i-~r~~~~L~~f~~~~~~ 81 (577)
.+.+||+||.|+|..|++.. +|+. +.....++.+- .... ..| +.+++.+ +..++ -+++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~-~G~~--~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~---~~~~~~~~ 75 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVA-TGEE--IATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEA---AIPTVLAE 75 (536)
T ss_pred eEEEEecCCCceEEEEEECC-CCcE--eeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHH---HHHHHHHH
Confidence 36889999999999999832 3543 33333333220 0000 012 3344443 22333 34455566
Q ss_pred cCCCcccEEEEeehhhh
Q 008124 82 HNISRDHTRAVATAAVR 98 (577)
Q Consensus 82 ~~v~~~~i~~vATsA~R 98 (577)
.+++..+|.+|+.++.+
T Consensus 76 ~~~~~~~I~aI~~s~q~ 92 (536)
T TIGR01234 76 LGVDPADVVGIGVDFTA 92 (536)
T ss_pred cCCCHHHEEEEEEecCc
Confidence 67765679999876653
No 120
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=73.02 E-value=9.9 Score=42.22 Aligned_cols=75 Identities=12% Similarity=0.186 Sum_probs=43.7
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCcccEE
Q 008124 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTR 90 (577)
Q Consensus 14 ~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i~ 90 (577)
.+.+|||||.++|..+++. +|+ ++...+.+.+. .....| ...++. .+.++++++. ++++.++++.+|.
T Consensus 2 ~~lgiDiGtt~iKa~l~d~--~g~--~l~~~~~~~~~--~~~~~g~~e~d~~~~~~~i~~~i~~---~~~~~~~~~~~i~ 72 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDK--DGN--IVAIHQKEFTQ--IFPKPGWVEHDPMEIWESVLSCIAE---ALAKAGIKPDDIA 72 (493)
T ss_pred eEEEEecCCCceEEEEECC--CCC--EEEEEeeeccc--cCCCCCcEeeCHHHHHHHHHHHHHH---HHHHcCCChhhee
Confidence 4678999999999999973 453 44444444332 112223 233443 3333444444 4456677656788
Q ss_pred EEeehhh
Q 008124 91 AVATAAV 97 (577)
Q Consensus 91 ~vATsA~ 97 (577)
+|+-++.
T Consensus 73 aIgis~~ 79 (493)
T TIGR01311 73 AIGITNQ 79 (493)
T ss_pred EEEEecC
Confidence 8876555
No 121
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=72.88 E-value=4.4 Score=44.28 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHHHHHh-hcc-cccchhhhhhcccCcchHHHHHHHHHHhhcccc----------------cCCCCchh
Q 008124 361 KAGAQCASIAKDIFEGLR-KCD-KLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF----------------TSKKGYHK 422 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~-~~~-~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~----------------I~~~~h~~ 422 (577)
.|+.-|+.+|..|...+. ... ++. .. .....|+++||++||||.- .....|.-
T Consensus 61 tHslev~~i~r~~~~~~~~~~~~~~~--------~~-~~~~~l~~a~~L~HDiGhpPfgH~gE~~L~~~~~~~ggFEgNa 131 (432)
T PRK05318 61 THSLEVAQIGTGIVAQLKKEKQPELK--------PL-LPSDSLIESLCLAHDIGHPPFGHGGEVALNYMMRDHGGFEGNG 131 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccc--------cc-cccHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhcCCCchHH
Confidence 799999999999988873 211 100 00 1134789999999999952 12345677
Q ss_pred hhHHHHHcCCC---CCCCCHHHHHHHHHHHHhc
Q 008124 423 QSCHIIMNGDH---LYGYSTDEIKLIALLTRFH 452 (577)
Q Consensus 423 Hs~yiI~ns~~---l~G~s~~E~~~iA~i~~yh 452 (577)
||+-||..-+. -.|++- -...++.++.|-
T Consensus 132 QslRIlt~Le~~~~~~GLNL-T~~tL~gilKYp 163 (432)
T PRK05318 132 QTFRILTKLEPYTEHFGMNL-TRRTLLGILKYP 163 (432)
T ss_pred HHHHHHHHHhccCCCCCccc-cHHHHHHHHcCC
Confidence 77777765430 246654 345566666663
No 122
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=72.13 E-value=15 Score=40.88 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=44.0
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCH-HHHHHHHHHHHHHHHHHHHcCCCccc
Q 008124 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SIST-QSQARSVESLLMFRDIIQSHNISRDH 88 (577)
Q Consensus 12 ~~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g--~Ls~-e~i~r~~~~L~~f~~~~~~~~v~~~~ 88 (577)
.+.+.+||||+.++|.++++.+. + +++...+..-..-. ...| +-++ +-.+.+++++++..+ +..++..+
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~~-~--~~~~~~~~~~~~~~--~~~g~~e~d~~~~w~~~~~ai~~l~~---~~~~~~~~ 74 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDEDG-G--EVVATARFENPVST--PQPGWAEQDPDELWQAILEALRQLLE---ESKIDPDA 74 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCCC-C--eEEEEeeccccccC--CCCCCcccCHHHHHHHHHHHHHHHHH---hcccChhh
Confidence 35789999999999999998642 3 33433332211211 1112 2333 334555555555544 44466667
Q ss_pred EEEEeehhh
Q 008124 89 TRAVATAAV 97 (577)
Q Consensus 89 i~~vATsA~ 97 (577)
|.+|+-++.
T Consensus 75 I~aI~is~~ 83 (502)
T COG1070 75 IAAIGISGQ 83 (502)
T ss_pred ceEEEEecc
Confidence 888875444
No 123
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=72.02 E-value=17 Score=40.58 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=43.9
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHHH-HHHHHHHHHHHHHHHHcCCCcc--c
Q 008124 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQSQ-ARSVESLLMFRDIIQSHNISRD--H 88 (577)
Q Consensus 14 ~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g--~Ls~e~i-~r~~~~L~~f~~~~~~~~v~~~--~ 88 (577)
.+..||+||.|+|..+++. +|++ +...+.+..+- ....| +.+++.+ +.+++++++.. +..+..+. +
T Consensus 3 ~~lgiDiGTts~Ka~l~d~--~G~~--v~~~~~~~~~~--~~~~g~~eqd~~~~~~~~~~~l~~~~---~~~~~~~~~~~ 73 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE--KGNV--VSSHQIPHEQI--TPHPGWLEHDPEEILRNVYKCMNEAI---KKLREKGPSFK 73 (504)
T ss_pred EEEEEecCCCceEEEEECC--CCCE--EEEEEEeeccc--CCCCCeEeeCHHHHHHHHHHHHHHHH---HHcCCCCccCc
Confidence 5789999999999999974 4643 44444433221 11122 2344433 34455555443 33444333 6
Q ss_pred EEEEeehhhhh
Q 008124 89 TRAVATAAVRA 99 (577)
Q Consensus 89 i~~vATsA~R~ 99 (577)
|.+|+.++.+.
T Consensus 74 I~aIgis~q~~ 84 (504)
T PTZ00294 74 IKAIGITNQRE 84 (504)
T ss_pred eEEEEeecCcc
Confidence 88888776643
No 124
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=71.71 E-value=4.3 Score=44.43 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhccc-CcchHHHHHHHHHHhhccc
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASF-EDKDLEYLEAACLLHNIGH 413 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~-~~~~r~LL~~Aa~LHdIG~ 413 (577)
.|+.-|+.+|..|...+..... ....+. .. ......++++||++||||.
T Consensus 64 tHsleV~~i~r~i~~~l~~~l~--~~~~~~--~~~~~~~~~lv~aa~L~HDiGh 113 (440)
T PRK01096 64 THSLEVSCVGRSLGMRVGETLK--EEKLPD--WISPADIGAIVQSACLAHDIGN 113 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--hhcccc--ccccchHHHHHHHHHHHhcCCC
Confidence 7888999988888766653211 000000 00 1123469999999999995
No 125
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=69.91 E-value=7.2 Score=37.39 Aligned_cols=71 Identities=18% Similarity=0.201 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCC---------------------
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKG--------------------- 419 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~~~--------------------- 419 (577)
+|...|+++|.+ |++.+++. + .-...|++|||++.+.....
T Consensus 20 ~H~l~V~~~A~~----LA~~y~~d-----------~---~kA~~AgilHD~aK~~p~~~~~~~~~~~~~~~~~~~~~~~l 81 (187)
T COG1713 20 EHCLGVAETAIE----LAEAYGLD-----------P---EKAYLAGILHDIAKELPEQKLLKIAKKYGLELDLERESPLL 81 (187)
T ss_pred HHHHHHHHHHHH----HHHHhCCC-----------H---HHHHHHHHHHHHHhhCCHHHHHHHHHHhCCCchhhccChHH
Confidence 799999999987 56666542 1 23888999999987755322
Q ss_pred -chhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCC
Q 008124 420 -YHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKK 455 (577)
Q Consensus 420 -h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~~yhrk~ 455 (577)
|..-|+|++.+- +|+..+|.. ..++||-..
T Consensus 82 lH~~vgay~~~~~---fGi~De~VL---~AI~~HTtg 112 (187)
T COG1713 82 LHGKVGAYLLKEE---FGIKDEEVL---SAIEYHTTG 112 (187)
T ss_pred HHHHHHHHHHHHH---hCCCcHHHH---HHHHHhccC
Confidence 344456666543 677665432 234567433
No 126
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=69.39 E-value=5.5 Score=39.38 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHhhccccc
Q 008124 397 KDLEYLEAACLLHNIGHFT 415 (577)
Q Consensus 397 ~~r~LL~~Aa~LHdIG~~I 415 (577)
.++.++-+||+|||||+-+
T Consensus 103 ~w~~~~~~aaLlHDlgK~~ 121 (218)
T TIGR03760 103 AWNAAVFYAALLHDLGKLA 121 (218)
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 4457899999999999973
No 127
>PRK10331 L-fuculokinase; Provisional
Probab=69.07 E-value=28 Score=38.40 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=43.3
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCcccE
Q 008124 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHT 89 (577)
Q Consensus 13 ~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i 89 (577)
+.+.+||+||.|+|..+++. +|++ +...+.+...-......| +..++. .+..++++++.. ++. ...+|
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~--~G~~--~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~---~~~--~~~~I 72 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDR--QGKI--VARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQIN---SEL--TECHI 72 (470)
T ss_pred ceEEEEecCCCceEEEEEcC--CCcE--EEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHH---HhC--Cccce
Confidence 35788999999999999974 4644 444444432211111112 344444 334444555443 322 22358
Q ss_pred EEEeehhhhh
Q 008124 90 RAVATAAVRA 99 (577)
Q Consensus 90 ~~vATsA~R~ 99 (577)
.+++-++.+.
T Consensus 73 ~~I~is~~~~ 82 (470)
T PRK10331 73 RGITVTTFGV 82 (470)
T ss_pred EEEEEecccc
Confidence 8888776654
No 128
>KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown]
Probab=69.03 E-value=6.3 Score=42.32 Aligned_cols=70 Identities=19% Similarity=0.284 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCCchhhhHHHH----HcCCCCCC
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQSCHII----MNGDHLYG 436 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~~~h~~Hs~yiI----~ns~~l~G 436 (577)
.|+.=|..+|-.+-+.|..--+.- . .+++.+..=.++|++|||||. +-.-|-|..- ..++ +-
T Consensus 76 eHsLG~~~lA~~~v~~L~~~q~~E---l----~It~~d~~~vqvA~LLHDIGH-----GPfSHmFe~~f~~~v~s~--~e 141 (498)
T KOG2681|consen 76 EHSLGTYTLAGILVNALNKNQCPE---L----CITEVDLQAVQVAALLHDIGH-----GPFSHLFEGEFTPMVRSG--PE 141 (498)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCC---C----CCCHHHHHHHHHHHHHhhcCC-----CchhhhhhheecccccCC--cc
Confidence 577778888888877776432110 0 457788888999999999994 2222333221 1333 56
Q ss_pred CCHHHHHH
Q 008124 437 YSTDEIKL 444 (577)
Q Consensus 437 ~s~~E~~~ 444 (577)
|+|++-.+
T Consensus 142 ~~HE~~si 149 (498)
T KOG2681|consen 142 FYHEDMSI 149 (498)
T ss_pred cchhhhHH
Confidence 89987654
No 129
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=68.70 E-value=44 Score=34.53 Aligned_cols=136 Identities=19% Similarity=0.186 Sum_probs=74.3
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCc---CCCCC-HHHHHHHHHHHHHHHHHHHHcCCCcc
Q 008124 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSS---SCSIS-TQSQARSVESLLMFRDIIQSHNISRD 87 (577)
Q Consensus 12 ~~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~---~g~Ls-~e~i~r~~~~L~~f~~~~~~~~v~~~ 87 (577)
++.+-.||=|+.++|.+|++. +|++ + |++... ..... ++++..+.+++..+.. +-|.+++
T Consensus 4 ~~~~lGVDGGGTkt~a~l~~~--~g~v--l---------g~g~sGpAN~~~~~~e~A~~ni~~ai~~A~~---~aG~~~~ 67 (301)
T COG2971 4 MPYFLGVDGGGTKTRAVLADE--DGNV--L---------GRGKSGPANIQLVGKEEAVRNIKDAIREALD---EAGLKPD 67 (301)
T ss_pred ccEEEEEccCCcceEEEEEcC--CCcE--E---------EEeccCCceecccchHHHHHHHHHHHHHHHH---hcCCCHH
Confidence 356889999999999999973 4443 3 333221 13334 6777777777766553 2344433
Q ss_pred c--EEEEeehhhhhcCChHHHHHHHHHHcC--CcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCC
Q 008124 88 H--TRAVATAAVRAAENKDEFVECVREKVG--FEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRG 163 (577)
Q Consensus 88 ~--i~~vATsA~R~A~N~~~fl~~i~~~tG--l~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~ 163 (577)
+ ..+++.+..= .|.++-......... .++.|-+.- +..+.|.. .++.++++=.|.||.-+.. +++
T Consensus 68 ~i~~~~agla~ag--~~~~~~~~~~~~~l~~a~~v~v~~Dg---~iAl~ga~-----~~~~Gii~i~GTGSi~~~~-~gg 136 (301)
T COG2971 68 EIAAIVAGLALAG--ANVEEAREELERLLPFAGKVDVENDG---LIALRGAL-----GDDDGIIVIAGTGSIGYGR-KGG 136 (301)
T ss_pred HhCceeeeeeccC--cchhHHHHHHHHhcCccceEEEecCh---HHHHhhcc-----CCCCCEEEEecCCeEEEEE-eCC
Confidence 2 2233333221 122333333322222 245665554 44444432 1345899999999999988 655
Q ss_pred eEEE--EEEEehh
Q 008124 164 KVVF--CESVNLG 174 (577)
Q Consensus 164 ~~~~--~~SlplG 174 (577)
+... .+.+++|
T Consensus 137 ~~~r~GG~Gf~Ig 149 (301)
T COG2971 137 RRERVGGWGFPIG 149 (301)
T ss_pred eeEEecCcCcccc
Confidence 5432 2444444
No 130
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=67.81 E-value=25 Score=39.60 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=42.2
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHH-HHHHHHHHHHHHHHHHcCCCcccEEEEe
Q 008124 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQ-ARSVESLLMFRDIIQSHNISRDHTRAVA 93 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i-~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (577)
+.+||+||.|+|..+++. +|++ +.....+..+-..-..-.+..++.+ +..+++++ ++++..+++..+|.+++
T Consensus 2 ~lgID~GTts~Ka~l~d~--~G~i--~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~---~~~~~~~~~~~~I~~Ig 74 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDS--TGDI--LALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVK---QVLAESKVDPNSVKGIG 74 (541)
T ss_pred EEEEEecCcCEEEEEEcC--CCCE--EEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHH---HHHHHcCCChhheEEEE
Confidence 568999999999999974 4543 4444433332111000112344443 33344444 45556676656788888
Q ss_pred ehh
Q 008124 94 TAA 96 (577)
Q Consensus 94 TsA 96 (577)
-++
T Consensus 75 is~ 77 (541)
T TIGR01315 75 FDA 77 (541)
T ss_pred ecc
Confidence 655
No 131
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=67.48 E-value=52 Score=35.33 Aligned_cols=96 Identities=19% Similarity=0.311 Sum_probs=60.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHc-CCCcccEEEEeehhhhhcCChHHHHHHHHHHc-------CCc-EEEeChHHH
Q 008124 56 SSCSISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKV-------GFE-VDVLTGEQE 126 (577)
Q Consensus 56 ~~g~Ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~t-------Gl~-i~VIsg~eE 126 (577)
++..++||-|... +|..+++.+++| |-+. ..+|-|- ..+|-+.=++.| |++ ++||+...-
T Consensus 143 ~~K~FtPeEiSaM--iL~KMKe~AEayLGkkv--~~AVvTv-------PAYFNDAQrQATKDAGtIAgLnV~RIiNePTa 211 (663)
T KOG0100|consen 143 ETKVFTPEEISAM--ILTKMKETAEAYLGKKV--THAVVTV-------PAYFNDAQRQATKDAGTIAGLNVVRIINEPTA 211 (663)
T ss_pred cccccCHHHHHHH--HHHHHHHHHHHHhCCcc--cceEEec-------chhcchHHHhhhcccceeccceEEEeecCccH
Confidence 4567899988754 588899999998 4321 2334442 123444434443 787 467777766
Q ss_pred HHHHHhhhhccCCCCCCceEEEEeCCCceEEEEe--eCCeE
Q 008124 127 AKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG--KRGKV 165 (577)
Q Consensus 127 A~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~--~~~~~ 165 (577)
|.+.| |.-. ...+.+.+|+|+|||...+++. ++|-+
T Consensus 212 AAIAY-GLDK--k~gEknilVfDLGGGTFDVSlLtIdnGVF 249 (663)
T KOG0100|consen 212 AAIAY-GLDK--KDGEKNILVFDLGGGTFDVSLLTIDNGVF 249 (663)
T ss_pred HHHHh-cccc--cCCcceEEEEEcCCceEEEEEEEEcCceE
Confidence 65544 4322 2245679999999999998874 55543
No 132
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional
Probab=66.69 E-value=7.6 Score=43.12 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHhhcccc-cchhhhhhcccC---cchHHHHHHHHHHhhccc
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKL-YNNQVKLIASFE---DKDLEYLEAACLLHNIGH 413 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l-~~~~~~~~~~~~---~~~r~LL~~Aa~LHdIG~ 413 (577)
.|+--|+.+|..|...+.....- +.... ..++ .....++++||++||||.
T Consensus 68 tHSleV~~i~r~i~~~i~~~l~~~~~~~~---~~~~~~~~~~~~lveaa~L~HDiGh 121 (503)
T PRK04926 68 THSLEVQQVGRYIAKEILSRLKEQKLLEA---YGLDELTGPFESIVEMACLMHDIGN 121 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccc---ccccccccchHHHHHHHHHHhcCCC
Confidence 68777777777665555321100 00000 0011 122479999999999994
No 133
>PLN02295 glycerol kinase
Probab=66.48 E-value=20 Score=39.97 Aligned_cols=76 Identities=11% Similarity=0.163 Sum_probs=42.8
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHHHH-HHHHHHHHHHHHHHHcCCCccc---
Q 008124 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQSQA-RSVESLLMFRDIIQSHNISRDH--- 88 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g--~Ls~e~i~-r~~~~L~~f~~~~~~~~v~~~~--- 88 (577)
+.+||+||.|+|..+++. +|+. +.....+..+- ....| +..++.+- .++++++ ++++..++++.+
T Consensus 2 vlgID~GTts~Ka~l~d~--~G~~--~~~~~~~~~~~--~~~~G~~Eqdp~~~w~~~~~~i~---~~~~~~~~~~~~i~~ 72 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDR--DARP--VASHQVEFTQI--YPQAGWVEHDPMEILESVLTCIA---KALEKAAAKGHNVDS 72 (512)
T ss_pred EEEEecCCCceEEEEECC--CCCE--EEEEeeccccc--CCCCCcEeeCHHHHHHHHHHHHH---HHHHHcCCCcccccc
Confidence 568999999999999973 5644 43333333221 11122 34555543 3344444 445555665544
Q ss_pred -EEEEeehhhhh
Q 008124 89 -TRAVATAAVRA 99 (577)
Q Consensus 89 -i~~vATsA~R~ 99 (577)
|.+|+-++.+.
T Consensus 73 ~i~aIg~s~q~~ 84 (512)
T PLN02295 73 GLKAIGITNQRE 84 (512)
T ss_pred ceEEEEEecCcc
Confidence 68888655543
No 134
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=66.35 E-value=7.4 Score=40.16 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=19.7
Q ss_pred CCceEEEEeCCCceEEEEeeCCeEEEEEEEeh
Q 008124 142 DRLVLSVDIGGGSTEFVIGKRGKVVFCESVNL 173 (577)
Q Consensus 142 ~~~~lviDIGGGStEl~~~~~~~~~~~~Slpl 173 (577)
.++.+++||||-||.+++..+|++.....-.+
T Consensus 76 ~~~~i~vDmGGTTtDi~~i~~G~p~~~~~~~~ 107 (290)
T PF01968_consen 76 LENAIVVDMGGTTTDIALIKDGRPEISSEGAI 107 (290)
T ss_dssp -SSEEEEEE-SS-EEEEEEETTEE--------
T ss_pred CCCEEEEeCCCCEEEEEEEECCeeeccccccc
Confidence 34699999999999999999999875544433
No 135
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=64.11 E-value=7.4 Score=42.41 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccc---------c-------CCCCchhhh
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF---------T-------SKKGYHKQS 424 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~---------I-------~~~~h~~Hs 424 (577)
.|+.-|+.+|..+...+. + ...|+++||++||||.- + ....|.-||
T Consensus 73 tHslev~~~~r~~~~~~~----~--------------~~~~~~~~~l~hd~GhpPfgH~gE~~l~~~~~~~ggFEGNAQs 134 (428)
T PRK03007 73 THSLEVAQIGRGIAAGLG----C--------------DPDLVDLAGLAHDIGHPPYGHNGERALDEVAADCGGFEGNAQT 134 (428)
T ss_pred HHHHHHHHHHHHHHHHhC----C--------------CHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCchHHHH
Confidence 799999999999876653 1 13689999999999952 1 124566677
Q ss_pred HHHHHcCCC--------CCCCCHHHHHHHHHHHHhc
Q 008124 425 CHIIMNGDH--------LYGYSTDEIKLIALLTRFH 452 (577)
Q Consensus 425 ~yiI~ns~~--------l~G~s~~E~~~iA~i~~yh 452 (577)
+-|+..-+. -.|++- -...++.++.|-
T Consensus 135 lRIlt~LE~~~~~~~~~~~GLNL-T~atL~gilKYp 169 (428)
T PRK03007 135 LRILTRLEPKVLDPDGRSAGLNL-TRASLDAACKYP 169 (428)
T ss_pred HHHHHHhccccccccccccCccc-CHHHHhheecCC
Confidence 777765431 115544 334555556653
No 136
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=63.52 E-value=3.5 Score=38.36 Aligned_cols=19 Identities=53% Similarity=0.775 Sum_probs=16.7
Q ss_pred HHHHHHHHhhcccccCCCC
Q 008124 401 YLEAACLLHNIGHFTSKKG 419 (577)
Q Consensus 401 LL~~Aa~LHdIG~~I~~~~ 419 (577)
=|=+||+|||||-.++.++
T Consensus 50 ~lVaaALLHDiGhl~~~~g 68 (186)
T COG4341 50 ALVAAALLHDIGHLYADYG 68 (186)
T ss_pred HHHHHHHHHhHHHHhhhcC
Confidence 3779999999999998876
No 137
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=61.92 E-value=1.3e+02 Score=27.52 Aligned_cols=99 Identities=14% Similarity=0.184 Sum_probs=61.6
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEe
Q 008124 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (577)
Q Consensus 14 ~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (577)
+++.|+|=+|-.++.+...+ +|.+.+.+-....+.|..+- +.+.+. +=-..|++++++|+|+ +|.+-
T Consensus 2 ~vCGVELkgneaii~ll~~~-~~~~~~pdcr~~k~~l~~~~------~~~~vr---~Fq~~f~kl~~dy~Vd--~VvIk- 68 (138)
T PF11215_consen 2 KVCGVELKGNEAIICLLSLD-DGLFQLPDCRVRKFSLSDDN------STEEVR---KFQFTFAKLMEDYKVD--KVVIK- 68 (138)
T ss_pred eEEEEEEecCeEEEEEEecC-CCceECCccceeEEEcCCCc------cHHHHH---HHHHHHHHHHHHcCCC--EEEEE-
Confidence 57899999999999999875 67788777666666676553 233333 3334578889999996 44221
Q ss_pred ehhh--hhcCChHHH-HHHHHHH-cCCcEEEeChHH
Q 008124 94 TAAV--RAAENKDEF-VECVREK-VGFEVDVLTGEQ 125 (577)
Q Consensus 94 TsA~--R~A~N~~~f-l~~i~~~-tGl~i~VIsg~e 125 (577)
--+- .-|-.+--| ++.+-+. -+++|+++|+.+
T Consensus 69 ~R~~KGKfAGga~~FKmEaaIQL~~~~~V~lvs~~~ 104 (138)
T PF11215_consen 69 ERATKGKFAGGAVGFKMEAAIQLIDDVEVELVSPAT 104 (138)
T ss_pred ecccCCCccCCchhHHHHHHHHhcCCCcEEEECHHH
Confidence 0000 001111122 3433333 389999999865
No 138
>PRK13317 pantothenate kinase; Provisional
Probab=61.09 E-value=2e+02 Score=29.47 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=41.3
Q ss_pred cCCcEEEeChHHHHHHHHhhhhccC---CCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEehhHHHHHH
Q 008124 114 VGFEVDVLTGEQEAKFVYMGVLQFL---PVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSE 180 (577)
Q Consensus 114 tGl~i~VIsg~eEA~l~~~gv~~~~---~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e 180 (577)
.|+++.= .+|-.-...|+..-+ ..+..+.++++||+|-. ++.+++++..+.-.-.+|--.+..
T Consensus 67 ~~~~~~~---v~E~~a~~~g~~~l~~~~~~~~~~~~i~~iG~g~s-i~~~~g~~~~r~~Gt~iGGgt~~g 132 (277)
T PRK13317 67 YGYPIAE---FVEFEATGLGVRYLLKEEGHDLNDYIFTNIGTGTS-IHYVDGNSQRRVGGTGIGGGTIQG 132 (277)
T ss_pred cCCCeee---eHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCceE-EEEEeCCceEEEccccccHHHHHH
Confidence 5655422 466666666776544 11234578899998866 888888877777777777755443
No 139
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=60.61 E-value=30 Score=38.52 Aligned_cols=75 Identities=11% Similarity=0.074 Sum_probs=52.2
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEE
Q 008124 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSS-CSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (577)
Q Consensus 13 ~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~-g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (577)
+.+-.||+||-|.|-.|++.. +| +.|.+..++++-.+--... -.=|.+-++..+.+++.-.+ +-||++.+|..
T Consensus 3 ~~~iGvDvGTgSaRA~v~D~~-~G--~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~---~agv~~~~V~g 76 (544)
T COG1069 3 AYVIGVDVGTGSARAGVFDCQ-TG--TLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVA---KAGVDPADVVG 76 (544)
T ss_pred cEEEEEeecCCceeEEEEEcC-CC--cchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHH---HcCCChhHeeE
Confidence 456789999999999999986 45 3466666666544332111 13356778888888876654 55899888888
Q ss_pred Ee
Q 008124 92 VA 93 (577)
Q Consensus 92 vA 93 (577)
++
T Consensus 77 IG 78 (544)
T COG1069 77 IG 78 (544)
T ss_pred EE
Confidence 76
No 140
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=60.09 E-value=22 Score=39.11 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=41.9
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHH-HHHHHHHHHHHHHHHHHHcCCCcccEEEEe
Q 008124 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQ-SQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (577)
Q Consensus 17 vIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g--~Ls~e-~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (577)
.||||++++|..+++. +|. ++.+...+...-. ...| ..+++ -++.+++++++ ++++++.++.+|.+|+
T Consensus 2 gIDiGtt~ik~~l~d~--~g~--i~~~~~~~~~~~~--~~~g~~e~d~~~~~~~l~~~i~~---~~~~~~~~~~~I~gIg 72 (481)
T TIGR01312 2 GIDLGTSGVKALLVDE--QGE--VIASGSAPHTVIS--PHPGWSEQDPEDWWDATEEAIKE---LLEQASEMGQDIKGIG 72 (481)
T ss_pred ceeecCcceEEEEECC--CCC--EEEEEeecccccC--CCCCCeeeCHHHHHHHHHHHHHH---HHHhcCCCcccEEEEE
Confidence 6999999999999974 454 3444444433211 1122 23333 34455555554 4456676656788888
Q ss_pred ehhh
Q 008124 94 TAAV 97 (577)
Q Consensus 94 TsA~ 97 (577)
-++.
T Consensus 73 vs~~ 76 (481)
T TIGR01312 73 ISGQ 76 (481)
T ss_pred EecC
Confidence 7643
No 141
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=59.36 E-value=1.2e+02 Score=30.23 Aligned_cols=132 Identities=14% Similarity=0.025 Sum_probs=71.8
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEee
Q 008124 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (577)
+..||||.+++|+.+++.. + +++.+.+.++. ..-.++-++.+.+.++.+.... +.. .-.+||+
T Consensus 2 ~lgidiggt~i~~~l~d~~--g--~i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~---~~~--~gIgv~~ 64 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDEN--L--QRIWHKRVPTP--------REDYPQLLQILRDLTEEADTYC---GVQ--GSVGIGI 64 (256)
T ss_pred EEEEEECCCcEEEEEECCC--C--CEEEEEEecCC--------CcCHHHHHHHHHHHHHHHHhhc---CCC--ceEEEEe
Confidence 5799999999999999753 4 34555544421 0113455555555565554311 110 1123333
Q ss_pred hh--------hhhc----CChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeC
Q 008124 95 AA--------VRAA----ENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKR 162 (577)
Q Consensus 95 sA--------~R~A----~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~ 162 (577)
.. ++.+ -+.-.+.+.+++++|++|.+-+.-.=+-+.-.-.-..- ..++.+.+-+|.| +-..++-+
T Consensus 65 pG~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~~pV~leNDanaaAlaE~~~g~~~--~~~~~v~i~lgtG-iG~giv~~ 141 (256)
T PRK13311 65 PGLPNADDGTVFTANVPSAMGQPLQADLSRLIQREVRIDNDANCFALSEAWDPEFR--TYPTVLGLILGTG-VGGGLIVN 141 (256)
T ss_pred cCcEECCCCEEEccCCCcccCCChHHHHHHHHCCCEEEEchhhHHHHHHHHhcCCC--CCCcEEEEEECcC-eEEEEEEC
Confidence 22 1111 12346778888999999999887766655443111111 1245677777744 33344555
Q ss_pred CeEE
Q 008124 163 GKVV 166 (577)
Q Consensus 163 ~~~~ 166 (577)
|++.
T Consensus 142 G~l~ 145 (256)
T PRK13311 142 GSIV 145 (256)
T ss_pred CEEe
Confidence 5554
No 142
>PRK13324 pantothenate kinase; Reviewed
Probab=58.75 E-value=2e+02 Score=29.12 Aligned_cols=132 Identities=12% Similarity=0.161 Sum_probs=68.2
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeecc-CCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEe
Q 008124 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGR-DLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~-~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (577)
+-+||||=.++++-+++ ++. .+... |+.. ... ..++| -...++.++..+++....+..+.
T Consensus 2 iL~iDiGNT~ik~gl~~---~~~--~~~~~----r~~t~~~~---~t~de-------~~~~l~~~~~~~~~~~~~i~~vi 62 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD---GDR--IVSQI----RYATSSVD---STSDQ-------MGVFLRQALRENSVDLGKIDGCG 62 (258)
T ss_pred EEEEEeCCCceEEEEEE---CCE--EEEEE----EEecCccc---cchHH-------HHHHHHHHHHhcCCCccCCCeEE
Confidence 45789999999999997 222 23322 2221 111 11111 12223344444454332344444
Q ss_pred ehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHH---------------HHHHhhhhccCCCCCCceEEEEeCCCceEEE
Q 008124 94 TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEA---------------KFVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (577)
Q Consensus 94 TsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~eEA---------------~l~~~gv~~~~~~~~~~~lviDIGGGStEl~ 158 (577)
-|.|. .+=...|.+.+.+..|.++.+++.+... .+...|+.... +..+.+|+|.|..-|==.
T Consensus 63 isSVv-P~l~~~l~~~~~~~~~~~~~~v~~~~~~l~~~y~~p~~lG~DR~~~~vaA~~~~--~~~~~iViD~GTA~T~d~ 139 (258)
T PRK13324 63 ISSVV-PHLNYSLGSAVIKYFNIKPFFISMDTTDLDMSAVEAHQVGADRIASCISAIADH--PNKDLLIIDLGTATTFDL 139 (258)
T ss_pred EEeCc-chhHHHHHHHHHHHhCCCeEEEecCCccceeecCChhhccHHHHHHHHHHHHhc--CCCCEEEEEcCCceEEEE
Confidence 44444 2223345466677788888777543311 01122222222 234689999999998766
Q ss_pred EeeCCeEEEE
Q 008124 159 IGKRGKVVFC 168 (577)
Q Consensus 159 ~~~~~~~~~~ 168 (577)
+-.+|...-.
T Consensus 140 v~~~g~~~GG 149 (258)
T PRK13324 140 VTKDKKYLSG 149 (258)
T ss_pred EcCCCeEEEE
Confidence 6566655533
No 143
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=54.96 E-value=43 Score=37.27 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=39.4
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCcccEEE
Q 008124 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTRA 91 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (577)
+.+|||||.++|..+++. +|.+ +...+.+...- ....| ..+++. .+.+++++++ +++..+.+ .+|.+
T Consensus 2 ~lgiDiGtt~~K~~l~d~--~g~i--~~~~~~~~~~~--~~~~g~~e~d~~~~~~~~~~~i~~---~~~~~~~~-~~I~~ 71 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEE--NGKI--VAKSSIGYPLY--TPASGMAEENPEEIFEAVLVTIRE---VSINLEDE-DEILF 71 (505)
T ss_pred EEEEeccccceEEEEEcC--CCCE--EEEEEeecccc--cCCCCCeeeCHHHHHHHHHHHHHH---HHHhCCCc-CceEE
Confidence 578999999999999973 5543 44343332211 11112 233433 3333444444 44444443 45788
Q ss_pred Eeehhh
Q 008124 92 VATAAV 97 (577)
Q Consensus 92 vATsA~ 97 (577)
|+-++.
T Consensus 72 Igis~~ 77 (505)
T TIGR01314 72 VSFSTQ 77 (505)
T ss_pred EEEecc
Confidence 876554
No 144
>PRK15027 xylulokinase; Provisional
Probab=54.91 E-value=46 Score=36.86 Aligned_cols=76 Identities=14% Similarity=0.324 Sum_probs=40.5
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHH-HHHHHHHHHHHHHHHHcCCCcccEEEEe
Q 008124 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQ-ARSVESLLMFRDIIQSHNISRDHTRAVA 93 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i-~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (577)
+-.||+||.|+|.++++. +|++ +...+.+..+...-...-+.+++.+ +.+++++ ++++++... .+|.+++
T Consensus 2 ~lgID~GTts~Ka~l~d~--~G~v--va~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~---~~l~~~~~~--~~I~aI~ 72 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNE--QGEV--VASQTEKLTVSRPHPLWSEQDPEQWWQATDRAM---KALGDQHSL--QDVKALG 72 (484)
T ss_pred EEEEEecccceEEEEEcC--CCCE--EEEEeecccccCCCCCccccCHHHHHHHHHHHH---HHHHHhCCc--cceeEEE
Confidence 568999999999999973 4644 4444333322111011113344333 2333333 344444432 4688888
Q ss_pred ehhhhh
Q 008124 94 TAAVRA 99 (577)
Q Consensus 94 TsA~R~ 99 (577)
-++.+.
T Consensus 73 is~q~~ 78 (484)
T PRK15027 73 IAGQMH 78 (484)
T ss_pred EecCCC
Confidence 766553
No 145
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=52.50 E-value=1.7e+02 Score=29.91 Aligned_cols=132 Identities=11% Similarity=0.053 Sum_probs=72.2
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEee
Q 008124 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (577)
+..||||.+.+++.+++.+ |. ++.+.+.++ . . .-.++.++...+.++++.. .++.. .-.+||.
T Consensus 2 ~lgidig~t~i~~~l~d~~--g~--i~~~~~~~~--~----~--~~~~~~~~~i~~~i~~~~~---~~~~~--~~igia~ 64 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEK--LE--LQWEERVPT--P----R--DSYDAFLDAVCELVAEADQ---RFGCK--GSVGIGI 64 (303)
T ss_pred eEEEEeCCCcEEEEEECCC--Cc--EEEEEEecC--C----C--cCHHHHHHHHHHHHHHHHh---hcCCc--ceEEEeC
Confidence 5789999999999999763 43 444443322 1 0 1134445555555655542 22221 1133443
Q ss_pred hhhh-------hcCCh-----HHHHHHHHHHcCCcEEEeChHHHHHHHH--hhhhccCCCCCCceEEEEeCCCceEEEEe
Q 008124 95 AAVR-------AAENK-----DEFVECVREKVGFEVDVLTGEQEAKFVY--MGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (577)
Q Consensus 95 sA~R-------~A~N~-----~~fl~~i~~~tGl~i~VIsg~eEA~l~~--~gv~~~~~~~~~~~lviDIGGGStEl~~~ 160 (577)
...= .+.|- -.+.+.+++++|++|.+-+.-.=+-+.- .|... ..++.+.+.+|.| +--.++
T Consensus 65 pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pV~ieNDa~aaalaE~~~g~~~----~~~~~~~l~~gtG-iG~giv 139 (303)
T PRK13310 65 PGMPETEDGTLYAANVPAASGKPLRADLSARLGRDVRLDNDANCFALSEAWDDEFT----QYPLVMGLILGTG-VGGGLV 139 (303)
T ss_pred CCcccCCCCEEeccCcccccCCcHHHHHHHHHCCCeEEeccHhHHHHHHhhhcccc----CCCcEEEEEecCc-eEEEEE
Confidence 2211 12222 2577889999999999887765443332 12211 1245788888864 344456
Q ss_pred eCCeEEEE
Q 008124 161 KRGKVVFC 168 (577)
Q Consensus 161 ~~~~~~~~ 168 (577)
-+|++...
T Consensus 140 ~~G~l~~G 147 (303)
T PRK13310 140 FNGKPISG 147 (303)
T ss_pred ECCEEeeC
Confidence 66766543
No 146
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=52.45 E-value=22 Score=38.63 Aligned_cols=78 Identities=12% Similarity=0.093 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHH----HhhhhccCCCCCCce
Q 008124 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV----YMGVLQFLPVFDRLV 145 (577)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~e-EA~l~----~~gv~~~~~~~~~~~ 145 (577)
++++..+.++.+|.. ++.+|....+.+..-.+.+.+.++ .-|+++.+.++-+ |..+. ......... .-
T Consensus 10 ~~~~l~~~l~~~g~~--~vlivt~~~~~~~g~~~~v~~~L~-~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~----~D 82 (414)
T cd08190 10 VTAEVGMDLKNLGAR--RVCLVTDPNLAQLPPVKVVLDSLE-AAGINFEVYDDVRVEPTDESFKDAIAFAKKGQ----FD 82 (414)
T ss_pred HHHHHHHHHHHcCCC--eEEEEECcchhhcchHHHHHHHHH-HcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcC----CC
Confidence 445555566677764 677777666766444566666665 4589999887633 22221 111111111 13
Q ss_pred EEEEeCCCce
Q 008124 146 LSVDIGGGST 155 (577)
Q Consensus 146 lviDIGGGSt 155 (577)
+|+-|||||+
T Consensus 83 ~IIaiGGGSv 92 (414)
T cd08190 83 AFVAVGGGSV 92 (414)
T ss_pred EEEEeCCccH
Confidence 8999999995
No 147
>PRK09557 fructokinase; Reviewed
Probab=52.38 E-value=1.5e+02 Score=30.36 Aligned_cols=132 Identities=16% Similarity=0.140 Sum_probs=69.9
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEee
Q 008124 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (577)
+-.||||.+++++.+++.+ |. ++.+.+.++. ..-.++.++.+.+.++++.. .++. ..-.+||+
T Consensus 2 ~lgidig~t~~~~~l~d~~--g~--i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~---~~~~--~~gIgi~~ 64 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDA--GE--ELFRKRLPTP--------RDDYQQTIEAIATLVDMAEQ---ATGQ--RGTVGVGI 64 (301)
T ss_pred EEEEEECCCcEEEEEECCC--CC--EEEEEEecCC--------CCCHHHHHHHHHHHHHHHHh---hcCC--ceEEEecC
Confidence 4689999999999999753 43 3444333221 01123344444444444432 2221 11234444
Q ss_pred hhhhh--------cC----ChHHHHHHHHHHcCCcEEEeChHHHHHHHH--hhhhccCCCCCCceEEEEeCCCceEEEEe
Q 008124 95 AAVRA--------AE----NKDEFVECVREKVGFEVDVLTGEQEAKFVY--MGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (577)
Q Consensus 95 sA~R~--------A~----N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~--~gv~~~~~~~~~~~lviDIGGGStEl~~~ 160 (577)
...=+ +. |.-.+.+.+++.+|++|.+.+.-.=+-+.- .|... ..++.+.+.+|.| +-..++
T Consensus 65 pG~vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~~pv~~~NDa~aaA~aE~~~g~~~----~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 65 PGSISPYTGLVKNANSTWLNGQPLDKDLSARLNREVRLANDANCLAVSEAVDGAAA----GKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred cccCcCCCCeEEecCCccccCCCHHHHHHHHHCCCEEEccchhHHHHHHHHhcccC----CCCcEEEEEEccc-eEEEEE
Confidence 33211 11 334567788889999999887655443332 12211 1245778888744 344455
Q ss_pred eCCeEEEE
Q 008124 161 KRGKVVFC 168 (577)
Q Consensus 161 ~~~~~~~~ 168 (577)
-+|++...
T Consensus 140 ~~G~l~~G 147 (301)
T PRK09557 140 INGRVHIG 147 (301)
T ss_pred ECCEEEec
Confidence 67776543
No 148
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=49.53 E-value=86 Score=32.80 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=24.2
Q ss_pred ccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH
Q 008124 87 DHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ 125 (577)
Q Consensus 87 ~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~e 125 (577)
..|...|..| +-..|.+.+.+.+|+++++++..+
T Consensus 284 ~~I~LtGgga-----~~~gl~~~l~~~l~~~v~~~~P~~ 317 (348)
T TIGR01175 284 DGLVLAGGGA-----TLSGLDAAIYQRLGLPTEVANPFA 317 (348)
T ss_pred ceEEEECccc-----cchhHHHHHHHHHCCCeEecChHH
Confidence 3565555433 344688999999999999998544
No 149
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=49.50 E-value=73 Score=34.19 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-----HHHHHHhhhhccCCCCCCce
Q 008124 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-----EAKFVYMGVLQFLPVFDRLV 145 (577)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~e-----EA~l~~~gv~~~~~~~~~~~ 145 (577)
++.+..+.++.+|.. ++.+|....++...-.+.+.+.++ +.|+.+.+.+|.+ |.-........... . -
T Consensus 18 ~~~~l~~~~~~~g~~--~~livt~~~~~~~g~~~~v~~~L~-~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~---~-D 90 (383)
T PRK09860 18 SLTDAMNMMADYGFT--RTLIVTDNMLTKLGMAGDVQKALE-ERNIFSVIYDGTQPNPTTENVAAGLKLLKENN---C-D 90 (383)
T ss_pred HHHHHHHHHHhcCCC--EEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcC---C-C
Confidence 455556667778874 667777666666544556666654 4689998988742 21111111122221 1 2
Q ss_pred EEEEeCCCce
Q 008124 146 LSVDIGGGST 155 (577)
Q Consensus 146 lviDIGGGSt 155 (577)
.|+=|||||+
T Consensus 91 ~IiaiGGGS~ 100 (383)
T PRK09860 91 SVISLGGGSP 100 (383)
T ss_pred EEEEeCCchH
Confidence 8999999995
No 150
>PRK13331 pantothenate kinase; Reviewed
Probab=48.14 E-value=1.4e+02 Score=30.11 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=19.8
Q ss_pred CCcccccccCCCceEEEEEecccceEEEEEE
Q 008124 1 MATNTSYMQIPQTLFASIDMGTSSFKLLIIR 31 (577)
Q Consensus 1 ~~~~~~~~~~~~~~~AvIDIGSNSirL~I~~ 31 (577)
|..|+|| .+-+||||=.++.+-+++
T Consensus 1 ~~~~~~~------~~L~iDiGNT~~~~g~f~ 25 (251)
T PRK13331 1 MMFHTSN------EWLALMIGNSRLHWGYFS 25 (251)
T ss_pred CCCCCCC------cEEEEEeCCCcEEEEEEE
Confidence 4455555 467999999999999997
No 151
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=46.78 E-value=39 Score=36.28 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-H-HHH-HHhhhhccCCCCCCceEE
Q 008124 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-E-AKF-VYMGVLQFLPVFDRLVLS 147 (577)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~e-E-A~l-~~~gv~~~~~~~~~~~lv 147 (577)
++++..+.++.+| . ++.+|....+.+..-.+.+.+.++ +.|+++.+.+|.+ + -.. ...++..... . +.-.|
T Consensus 10 ~l~~l~~~~~~~g-~--~~livt~~~~~~~~~~~~v~~~L~-~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~-~-~~D~I 83 (386)
T cd08191 10 QRRQLPRLAARLG-S--RALIVTDERMAGTPVFAELVQALA-AAGVEVEVFDGVLPDLPRSELCDAASAAAR-A-GPDVI 83 (386)
T ss_pred HHHHHHHHHHHcC-C--eEEEEECcchhhcchHHHHHHHHH-HcCCeEEEECCCCCCcCHHHHHHHHHHHHh-c-CCCEE
Confidence 3445555666677 3 567777666665444445555543 4589999998775 1 111 1122221111 1 12389
Q ss_pred EEeCCCce
Q 008124 148 VDIGGGST 155 (577)
Q Consensus 148 iDIGGGSt 155 (577)
+=|||||+
T Consensus 84 IaiGGGS~ 91 (386)
T cd08191 84 IGLGGGSC 91 (386)
T ss_pred EEeCCchH
Confidence 99999995
No 152
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=45.74 E-value=60 Score=34.71 Aligned_cols=80 Identities=20% Similarity=0.248 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHH-HHH--HHhhhhccCCCCCCceEE
Q 008124 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKF--VYMGVLQFLPVFDRLVLS 147 (577)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~eE-A~l--~~~gv~~~~~~~~~~~lv 147 (577)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ +.|+++.+.++-++ ..+ ...++..... . +.-.|
T Consensus 15 ~l~~l~~~l~~~g~~--~~livt~~~~~~~~~~~~v~~~L~-~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~-~-~~d~I 89 (377)
T cd08188 15 ALKLAGRYARRLGAK--KVLLVSDPGVIKAGWVDRVIESLE-EAGLEYVVFSDVSPNPRDEEVMAGAELYLE-N-GCDVI 89 (377)
T ss_pred HHHHHHHHHHHcCCC--eEEEEeCcchhhCccHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHHHHh-c-CCCEE
Confidence 445555566677764 666676666766544566666654 56889988886432 211 1112211111 1 22389
Q ss_pred EEeCCCce
Q 008124 148 VDIGGGST 155 (577)
Q Consensus 148 iDIGGGSt 155 (577)
+=|||||+
T Consensus 90 IaiGGGsv 97 (377)
T cd08188 90 IAVGGGSP 97 (377)
T ss_pred EEeCCchH
Confidence 99999995
No 153
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=44.73 E-value=1.4e+02 Score=30.82 Aligned_cols=57 Identities=18% Similarity=0.063 Sum_probs=38.7
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeee-eeeeeccCCCcCCCCCHHHHHHHHHHHHH
Q 008124 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLK-QPVILGRDLSSSCSISTQSQARSVESLLM 74 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k-~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~ 74 (577)
..++|||+.|+.+..++ ++.+..-.+.. -.+||-+....++..+++.++.+.+.++.
T Consensus 127 ~~v~DiGGGSte~~~~~---~~~~~~~~Sl~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~ 184 (300)
T TIGR03706 127 GLVVDIGGGSTELILGK---DFEPGEGVSLPLGCVRLTEQFFPDGPISKKSLKQARKAARE 184 (300)
T ss_pred cEEEEecCCeEEEEEec---CCCEeEEEEEccceEEhHHhhCCCCCCCHHHHHHHHHHHHH
Confidence 48999999999999874 34432222232 24688888777778887777766665543
No 154
>PRK00976 hypothetical protein; Provisional
Probab=43.72 E-value=4.1e+02 Score=27.95 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCcEEEeChHH--------------------HHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCC
Q 008124 104 DEFVECVREKVGFEVDVLTGEQ--------------------EAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRG 163 (577)
Q Consensus 104 ~~fl~~i~~~tGl~i~VIsg~e--------------------EA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~ 163 (577)
..+.+.|+ +.|+|+-+|.|-- ---..|++.. .....+.++.|||+ .|=....++|
T Consensus 94 ~~v~~~i~-~s~ip~~~iPGvh~~~~t~~p~~r~~sh~~s~eK~~ia~~a~~---~~~~~~fi~~diss-ntv~~~V~~g 168 (326)
T PRK00976 94 TRVYDEIK-ESGIPAVVIPGLHRGSPTLDPRFRVYSHIASPEKIGIAYNAYK---LFGFENFIVSDISS-NTVTLLVKDG 168 (326)
T ss_pred HHHHHHHH-hCCCCEEEeCceecCCCCCCHHHHHhccCCCHHHHHHHHHHHh---hcCCCcEEEEeccc-cEEEEEEECC
Confidence 56778874 5699988887754 1122233322 23346799999999 8888899999
Q ss_pred eEEEEE
Q 008124 164 KVVFCE 169 (577)
Q Consensus 164 ~~~~~~ 169 (577)
+++...
T Consensus 169 kIvgg~ 174 (326)
T PRK00976 169 KIVGAF 174 (326)
T ss_pred EEEccc
Confidence 998653
No 155
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=43.68 E-value=97 Score=27.50 Aligned_cols=53 Identities=11% Similarity=0.216 Sum_probs=37.1
Q ss_pred HHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHH
Q 008124 75 FRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFV 130 (577)
Q Consensus 75 f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~ 130 (577)
+.+.++.++++...|.++||-.++ ..+.-+..+-++.|+++...+.+|=....
T Consensus 21 i~~~l~~~~~~~~~i~~iasi~~K---~~E~~l~~~A~~l~~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 21 IEQALAEAGLSPRSIAAIASIDIK---ADEPGLLELAEELGIPLRFFSAEELNAVE 73 (121)
T ss_dssp HHHHHHHCT--GGGEEEEEESSSS---S--HHHHHHHHHCTSEEEEE-HHHHHCHH
T ss_pred HHHHHHHcCCChhhccEEEecccc---CCCHHHHHHHHHhCCCeEEECHHHHhcCC
Confidence 344566788988899999998664 34556667778899999999999877554
No 156
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=42.53 E-value=93 Score=33.28 Aligned_cols=78 Identities=12% Similarity=0.189 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHH----HhhhhccCCCCCCce
Q 008124 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV----YMGVLQFLPVFDRLV 145 (577)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~e-EA~l~----~~gv~~~~~~~~~~~ 145 (577)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ +.|+++.+.++.+ +..+. ......... .-
T Consensus 16 ~l~~l~~~l~~~g~~--r~lvvt~~~~~~~g~~~~v~~~L~-~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~----~D 88 (379)
T TIGR02638 16 AIEDIVDEVKRRGFK--KALVVTDKDLIKFGVADKVTDLLD-EAGIAYELFDEVKPNPTITVVKAGVAAFKASG----AD 88 (379)
T ss_pred HHHHHHHHHHhcCCC--EEEEEcCcchhhccchHHHHHHHH-HCCCeEEEECCCCCCcCHHHHHHHHHHHHhcC----CC
Confidence 344455556667764 667777666766545566666664 5699999987653 22111 111112221 13
Q ss_pred EEEEeCCCce
Q 008124 146 LSVDIGGGST 155 (577)
Q Consensus 146 lviDIGGGSt 155 (577)
.|+=|||||+
T Consensus 89 ~IiaiGGGSv 98 (379)
T TIGR02638 89 YLIAIGGGSP 98 (379)
T ss_pred EEEEeCChHH
Confidence 8999999996
No 157
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=42.16 E-value=1.9e+02 Score=26.23 Aligned_cols=94 Identities=15% Similarity=0.219 Sum_probs=57.2
Q ss_pred eEEEEEecccceEEEEEEEeCCCCE-EEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEE
Q 008124 14 LFASIDMGTSSFKLLIIRAYPNGKF-LTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (577)
Q Consensus 14 ~~AvIDIGSNSirL~I~~~~~~~~~-~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (577)
.+.+||.|+-.|=+.|.+. .+.+ .++..... .+ . . ..++.+.+++++|+++ ..+|
T Consensus 5 ~iLalD~G~kriGvAv~d~--~~~~a~pl~~i~~-----~~----~--~--------~~~~~l~~~i~~~~i~---~iVv 60 (138)
T PRK00109 5 RILGLDVGTKRIGVAVSDP--LGGTAQPLETIKR-----NN----G--T--------PDWDRLEKLIKEWQPD---GLVV 60 (138)
T ss_pred cEEEEEeCCCEEEEEEecC--CCCEEcCEEEEEc-----CC----C--c--------hHHHHHHHHHHHhCCC---EEEE
Confidence 4889999999888888753 2322 11211100 00 0 0 2256677788889884 4678
Q ss_pred ee------hhhhhcCChHHHHHHHHHHcCCcEEEeCh---HHHHHHHH
Q 008124 93 AT------AAVRAAENKDEFVECVREKVGFEVDVLTG---EQEAKFVY 131 (577)
Q Consensus 93 AT------sA~R~A~N~~~fl~~i~~~tGl~i~VIsg---~eEA~l~~ 131 (577)
|- +.-..|.-...|.+++++.++++|...+. ..||.-.+
T Consensus 61 GlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~TT~~A~~~l 108 (138)
T PRK00109 61 GLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERLSTVEAERAL 108 (138)
T ss_pred eccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCHHHHHHHH
Confidence 71 11222333458999999999999998875 34554444
No 158
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=41.97 E-value=37 Score=36.17 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChH-HHHHHHH--hhhhccCCCCCCceEE
Q 008124 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGE-QEAKFVY--MGVLQFLPVFDRLVLS 147 (577)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~-eEA~l~~--~gv~~~~~~~~~~~lv 147 (577)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ +-|+++.+.++- .+..+.- .++.. .... +.-+|
T Consensus 11 ~~~~l~~~l~~~g~~--~~liv~~~~~~~~~~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~-~~~~-~~d~I 85 (370)
T cd08192 11 AIKELPAECAELGIK--RPLIVTDPGLAALGLVARVLALLE-DAGLAAALFDEVPPNPTEAAVEAGLAA-YRAG-GCDGV 85 (370)
T ss_pred HHHHHHHHHHHcCCC--eEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHH-HHhc-CCCEE
Confidence 345555566667763 566676666655444566666554 458999888753 2222221 11111 1111 12389
Q ss_pred EEeCCCce
Q 008124 148 VDIGGGST 155 (577)
Q Consensus 148 iDIGGGSt 155 (577)
+=|||||+
T Consensus 86 IaiGGGSv 93 (370)
T cd08192 86 IAFGGGSA 93 (370)
T ss_pred EEeCCchH
Confidence 99999995
No 159
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=41.76 E-value=90 Score=33.68 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHH--HHhhhhccCCCCCCceEE
Q 008124 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKF--VYMGVLQFLPVFDRLVLS 147 (577)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~e-EA~l--~~~gv~~~~~~~~~~~lv 147 (577)
++++..+.++.+|.. ++.+|+...++++.=-+.+.+.++ +.|+++.+.++-+ |-.+ ...++...-. . +.-.|
T Consensus 36 ~~~~l~~~~~~~g~~--~~lvv~~~~~~~~g~~~~v~~~L~-~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~-~-~~D~I 110 (395)
T PRK15454 36 AVSSCGQQAQTRGLK--HLFVMADSFLHQAGMTAGLTRSLA-VKGIAMTLWPCPVGEPCITDVCAAVAQLRE-S-GCDGV 110 (395)
T ss_pred HHHHHHHHHHhcCCC--EEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEECCCCCCcCHHHHHHHHHHHHh-c-CcCEE
Confidence 344455556667763 667776666766433466666654 4699888876544 2211 1112221111 1 12389
Q ss_pred EEeCCCce
Q 008124 148 VDIGGGST 155 (577)
Q Consensus 148 iDIGGGSt 155 (577)
+=|||||+
T Consensus 111 iavGGGS~ 118 (395)
T PRK15454 111 IAFGGGSV 118 (395)
T ss_pred EEeCChHH
Confidence 99999995
No 160
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=41.46 E-value=95 Score=33.27 Aligned_cols=77 Identities=13% Similarity=0.224 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHH----HhhhhccCCCCCCceE
Q 008124 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV----YMGVLQFLPVFDRLVL 146 (577)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~e-EA~l~----~~gv~~~~~~~~~~~l 146 (577)
+.+..+.++.+|.. ++.+|....+.+..=.+.+.+.++ +.|+++.+.++-+ |..+. ......... - -+
T Consensus 18 l~~l~~~~~~~g~~--~~lvvtd~~~~~~g~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~---~-D~ 90 (382)
T PRK10624 18 IGALTDEVKRRGFK--KALIVTDKTLVKCGVVAKVTDVLD-AAGLAYEIYDGVKPNPTIEVVKEGVEVFKASG---A-DY 90 (382)
T ss_pred HHHHHHHHHhcCCC--EEEEEeCcchhhCcchHHHHHHHH-HCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC---C-CE
Confidence 44455556667763 677777776766544555555554 4689999987553 21111 111111111 1 38
Q ss_pred EEEeCCCce
Q 008124 147 SVDIGGGST 155 (577)
Q Consensus 147 viDIGGGSt 155 (577)
|+=|||||+
T Consensus 91 IIaiGGGS~ 99 (382)
T PRK10624 91 LIAIGGGSP 99 (382)
T ss_pred EEEeCChHH
Confidence 999999995
No 161
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=41.43 E-value=1.1e+02 Score=27.48 Aligned_cols=60 Identities=15% Similarity=0.273 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHH
Q 008124 60 ISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAK 128 (577)
Q Consensus 60 Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~ 128 (577)
.+.+.|..++ .+.++.+++.+..|.++||-.++.. - .-+..+-++.|++++..|.+|=..
T Consensus 14 ~~~e~i~~ai------~~~L~~~~l~~~si~~lasi~~K~~--E-~~L~~~A~~lg~pl~~~~~~eL~~ 73 (126)
T PRK07027 14 VPAEQIEAAI------RAALAQRPLASADVRVVATLDLKAD--E-AGLLALCARHGWPLRAFSAAQLAA 73 (126)
T ss_pred CCHHHHHHHH------HHHHHHcCCCHHHhheeEehhhhcC--C-HHHHHHHHHhCCCeEEeCHHHHHh
Confidence 4666655443 3566778888888999999887643 2 344445567899999998888654
No 162
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=41.18 E-value=31 Score=37.33 Aligned_cols=41 Identities=29% Similarity=0.290 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccc
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF 414 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~ 414 (577)
.|+--|+.+|..|=.+|.--. . .....|+++||+.||||.-
T Consensus 71 THSLEVAQIgRsia~~l~~~~------------~-~~~~dL~E~a~LaHDiGhP 111 (412)
T COG0232 71 THSLEVAQIGRSIARELGLDL------------D-LPFEDLVETACLAHDIGHP 111 (412)
T ss_pred hhhHHHHHHHHHHHHHhcccc------------C-CChHHHHHHHHHHhcCCCC
Confidence 688888887776644443110 0 1123799999999999964
No 163
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=40.94 E-value=16 Score=24.11 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=19.3
Q ss_pred HHHHcCCCcHHHHHhhcCCCccchhhHH
Q 008124 268 ERLCCGGDGEVERVRRERFFKRRSEFIV 295 (577)
Q Consensus 268 ~~l~~~~~~~~er~~~~gl~~~Radii~ 295 (577)
+.+...+.+ |++++||+.+..|+.|+
T Consensus 3 ~g~~pas~e--eL~~lpGIG~~tA~~I~ 28 (30)
T PF00633_consen 3 DGLIPASIE--ELMKLPGIGPKTANAIL 28 (30)
T ss_dssp HHHHTSSHH--HHHTSTT-SHHHHHHHH
T ss_pred CCcCCCCHH--HHHhCCCcCHHHHHHHH
Confidence 344556766 89999999999988775
No 164
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=40.92 E-value=29 Score=36.30 Aligned_cols=139 Identities=19% Similarity=0.211 Sum_probs=75.1
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEeehh
Q 008124 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAA 96 (577)
Q Consensus 17 vIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA 96 (577)
.+|||-=.++.. .++++|....+.. .+.-|=++.. ++-++|+.+.+ .++.. +..-++=|.=
T Consensus 2 G~DiGGA~~K~a--~~~~~g~~~~v~~--~~~plW~~~~-----------~L~~~l~~~~~---~~~~~-~~~avtMTgE 62 (318)
T TIGR03123 2 GIDIGGANTKAA--ELDEDGRIKEVHQ--LYCPLWKGND-----------KLAETLKEISQ---DLSSA-DNVAVTMTGE 62 (318)
T ss_pred ccccccceeeeE--EecCCCceeEEEE--ecCcccCCch-----------HHHHHHHHHHH---hcCcc-ceEEEEeehh
Confidence 479997655554 4455565444432 4444554432 22234444333 33331 2444555665
Q ss_pred hhhc-----CChHHHHHHHHHHcCCcEEEeCh------HHHHH-----HHHhhhh---ccCCCCCCceEEEEeCCCceEE
Q 008124 97 VRAA-----ENKDEFVECVREKVGFEVDVLTG------EQEAK-----FVYMGVL---QFLPVFDRLVLSVDIGGGSTEF 157 (577)
Q Consensus 97 ~R~A-----~N~~~fl~~i~~~tGl~i~VIsg------~eEA~-----l~~~gv~---~~~~~~~~~~lviDIGGGStEl 157 (577)
+-++ .=-..+++.+.+..+-++.+..+ -++|. +...|.. ..+....++.+++||||=||.+
T Consensus 63 LaD~f~~r~~GV~~i~~~~~~~~~~~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~la~~~~~~I~~DmGGTTtDi 142 (318)
T TIGR03123 63 LADCFEDKAEGVEFILAAVESAFGSPVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLIAKRIPECLFVDMGSTTTDI 142 (318)
T ss_pred hhhhhcCHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHHHhcCCCEEEEEcCccceee
Confidence 5543 22234567777777767766322 23332 2111221 1111113459999999999999
Q ss_pred EEeeCCeEEEEEEEehh
Q 008124 158 VIGKRGKVVFCESVNLG 174 (577)
Q Consensus 158 ~~~~~~~~~~~~SlplG 174 (577)
+.+.+|++.......++
T Consensus 143 ~~i~~G~p~~~~~~d~~ 159 (318)
T TIGR03123 143 IPIIDGEVAAKGKTDLE 159 (318)
T ss_pred EEecCCEeeeeechhhh
Confidence 99999998866455554
No 165
>PRK10854 exopolyphosphatase; Provisional
Probab=40.03 E-value=1.3e+02 Score=33.63 Aligned_cols=57 Identities=19% Similarity=0.119 Sum_probs=40.2
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeee-eeeeeccCCCcCCCCCHHHHHHHHHHHH
Q 008124 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLK-QPVILGRDLSSSCSISTQSQARSVESLL 73 (577)
Q Consensus 14 ~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k-~~vrLg~~~~~~g~Ls~e~i~r~~~~L~ 73 (577)
...+||||+.|+-+.+++ ++.+....+.. -.|||-+..+..+..+++.++++...+.
T Consensus 138 ~~lvvDIGGGStEl~~~~---~~~~~~~~S~~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~ 195 (513)
T PRK10854 138 RKLVIDIGGGSTELVIGE---NFEPILVESRRMGCVSFAQLYFPGGVISKENFQRARLAAA 195 (513)
T ss_pred CeEEEEeCCCeEEEEEec---CCCeeEeEEEecceeeHHhhhCCCCCCCHHHHHHHHHHHH
Confidence 468999999999999985 34444444443 3568888777778888777666555543
No 166
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=39.52 E-value=41 Score=37.12 Aligned_cols=161 Identities=17% Similarity=0.251 Sum_probs=84.1
Q ss_pred CCceE-EEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcC------C-----CCCHHHHHHHHHHHHHHHHH
Q 008124 11 PQTLF-ASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSS------C-----SISTQSQARSVESLLMFRDI 78 (577)
Q Consensus 11 ~~~~~-AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~------g-----~Ls~e~i~r~~~~L~~f~~~ 78 (577)
++..| -++|+||.+||+...++............+.+++.|+.+..- | .|+-+..+ ..++.|-..
T Consensus 161 ~~~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~~i~~~~D~a~~l~~~vVe---~i~~~id~~ 237 (614)
T COG3894 161 KNEAYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDFAIMMGPDGAEGLQIAVVE---AINQLIDKL 237 (614)
T ss_pred cceeeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHHHHHhCcchhhhhHHHHHH---HHHHHHhhh
Confidence 44456 479999999999999997433356777788889999877531 1 22222222 224456667
Q ss_pred HHHcCCCcccEE--EEeehhhhh-c---CChH-----HHHHHHHH-------HcCCcE----EEeChHHHH---HHHHhh
Q 008124 79 IQSHNISRDHTR--AVATAAVRA-A---ENKD-----EFVECVRE-------KVGFEV----DVLTGEQEA---KFVYMG 133 (577)
Q Consensus 79 ~~~~~v~~~~i~--~vATsA~R~-A---~N~~-----~fl~~i~~-------~tGl~i----~VIsg~eEA---~l~~~g 133 (577)
|..++|....|. ++.-..+++ | .|.. +|..+... ..|+++ ++..-.-=| =-..+|
T Consensus 238 ~~e~~V~~n~I~~svfqgn~Im~h~faG~~~~~l~~~p~~~~~~r~v~~~a~~iGl~~n~n~el~vlP~Ia~~VGADAla 317 (614)
T COG3894 238 CEEGEVCGNPIQLSVFQGNPIMDHAFAGIDPTELGGSPFVKRVSRVVPASASEIGLEVNRNCELFVLPAIAHEVGADALA 317 (614)
T ss_pred chhccccccchhheeccCchHHHHHhcCCCHHHhcCCccccccccceecchhhcchhhcCCCEEEecchhccccchHHHH
Confidence 777775543321 222222222 1 1111 11111111 011111 111000000 011122
Q ss_pred hh--ccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEehhHH
Q 008124 134 VL--QFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHV 176 (577)
Q Consensus 134 v~--~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~v 176 (577)
.. ..+-..++-.+++|+|. +.|++++.++.+. +.|-|-|+.
T Consensus 318 ~il~tg~~~sdevslvtD~GT-NaEivlg~~~ri~-t~SaaaGPA 360 (614)
T COG3894 318 MILSTGIHDSDEVSLVTDYGT-NAEIVLGNRDRIV-TASAAAGPA 360 (614)
T ss_pred HHHhccCccccceEEEEeecc-cceEEeccCCEEE-EecCCCCcc
Confidence 22 12212345689999986 6899999888765 668888874
No 167
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=39.04 E-value=1.4e+02 Score=31.80 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHH----HhhhhccCCCCCCce
Q 008124 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV----YMGVLQFLPVFDRLV 145 (577)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~e-EA~l~----~~gv~~~~~~~~~~~ 145 (577)
++++..+.++.++.. ++.+|....+.+..-.+.+.+.++ +.|+++.+.++-+ +..+. ......... .-
T Consensus 10 ~l~~l~~~l~~~~~~--~~lvv~~~~~~~~~~~~~v~~~L~-~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~----~d 82 (370)
T cd08551 10 AIEKLGEEIKNLGGR--KALIVTDPGLVKTGVLDKVIDSLK-EAGIEVVIFDGVEPNPTLSNVDAAVAAYREEG----CD 82 (370)
T ss_pred HHHHHHHHHHHcCCC--eEEEEeCcchhhCccHHHHHHHHH-HcCCeEEEECCCCCCCCHHHHHHHHHHHHhcC----CC
Confidence 344555556666763 666676666655333455666665 4588888887532 22222 111111111 13
Q ss_pred EEEEeCCCce
Q 008124 146 LSVDIGGGST 155 (577)
Q Consensus 146 lviDIGGGSt 155 (577)
.|+-|||||+
T Consensus 83 ~IiaiGGGs~ 92 (370)
T cd08551 83 GVIAVGGGSV 92 (370)
T ss_pred EEEEeCCchH
Confidence 8999999995
No 168
>PLN02669 xylulokinase
Probab=38.34 E-value=1.2e+02 Score=34.48 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=20.2
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCE
Q 008124 12 QTLFASIDMGTSSFKLLIIRAYPNGKF 38 (577)
Q Consensus 12 ~~~~AvIDIGSNSirL~I~~~~~~~~~ 38 (577)
.+++-.||+||.|+|-+|++. +|+.
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~--~g~v 31 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDS--NLRI 31 (556)
T ss_pred CCeEEEEecccCCeEEEEEcC--CCCE
Confidence 456889999999999999973 4544
No 169
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=37.26 E-value=4.7e+02 Score=26.73 Aligned_cols=128 Identities=23% Similarity=0.277 Sum_probs=80.3
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEe
Q 008124 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (577)
Q Consensus 14 ~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (577)
.+..||||.-...+... +|....++..--| +-. .-+|+-++|+++... +.+ +.+-+|-
T Consensus 4 kilGiDIGGAntk~a~~----DG~~~~~d~~YlP------MWk-------~k~rL~~~Lkei~~k---~~~--~~vgvvM 61 (330)
T COG1548 4 KILGIDIGGANTKIASS----DGDNYKIDHIYLP------MWK-------KKDRLEETLKEIVHK---DNV--DYVGVVM 61 (330)
T ss_pred eEEEeeccCccchhhhc----cCCeeeeeEEEec------ccc-------chhHHHHHHHHHhcc---CCc--ceeEEEe
Confidence 36899999988887763 4443333322222 111 124555677766542 555 3567788
Q ss_pred ehhhhhcCC-----hHHHHHHHHHHcCCcEEEeChH-----HHHHHHHhhhh--cc------C-CCCCCceEEEEeCCCc
Q 008124 94 TAAVRAAEN-----KDEFVECVREKVGFEVDVLTGE-----QEAKFVYMGVL--QF------L-PVFDRLVLSVDIGGGS 154 (577)
Q Consensus 94 TsA~R~A~N-----~~~fl~~i~~~tGl~i~VIsg~-----eEA~l~~~gv~--~~------~-~~~~~~~lviDIGGGS 154 (577)
|+-+-+|=| -+.+++.++...+-++.+++-+ -||.=.+.-+. +. + ....++.+++|+|+-.
T Consensus 62 TaELaD~f~tk~eGVe~Ii~~v~~Af~~pv~~v~~~G~~~ssEa~~~~~~vAAaNW~Ata~~~~e~~~dsci~VD~GSTT 141 (330)
T COG1548 62 TAELADAFKTKAEGVEDIIDTVEKAFNCPVYVVDVNGNFLSSEALKNPREVAAANWVATARFLAEEIKDSCILVDMGSTT 141 (330)
T ss_pred eHHHHHHhhhHHhHHHHHHHHHHHhcCCceEEEeccCcCcChhHhcCHHHHHHhhhHHHHHHHHHhcCCceEEEecCCcc
Confidence 998887744 4678899999999999887532 15543333332 21 1 1123458999999999
Q ss_pred eEEEEeeCC
Q 008124 155 TEFVIGKRG 163 (577)
Q Consensus 155 tEl~~~~~~ 163 (577)
|.++-..+|
T Consensus 142 tDIIPi~~g 150 (330)
T COG1548 142 TDIIPIKDG 150 (330)
T ss_pred cceEeecch
Confidence 999987655
No 170
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=36.96 E-value=56 Score=35.81 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=15.9
Q ss_pred EEEecccceEEEEEEEe
Q 008124 17 SIDMGTSSFKLLIIRAY 33 (577)
Q Consensus 17 vIDIGSNSirL~I~~~~ 33 (577)
+||+||.|+|..+++.+
T Consensus 2 aiD~Gtt~~k~~l~~~~ 18 (454)
T TIGR02627 2 AVDLGASSGRVMLASYE 18 (454)
T ss_pred cEeccCCchheEEEEEc
Confidence 79999999999999876
No 171
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=35.97 E-value=2.6e+02 Score=29.64 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHcCCcEEEeChHH--------------------HHHHHHhhhh-----ccCCCCCCceEEEEeCCCceEE
Q 008124 103 KDEFVECVREKVGFEVDVLTGEQ--------------------EAKFVYMGVL-----QFLPVFDRLVLSVDIGGGSTEF 157 (577)
Q Consensus 103 ~~~fl~~i~~~tGl~i~VIsg~e--------------------EA~l~~~gv~-----~~~~~~~~~~lviDIGGGStEl 157 (577)
...+++.+ .+-++++-.|.|-- --.-.++++. .+.+...-+.+++|||.|.|=.
T Consensus 90 lr~~~~~l-~~~~l~~~~iPgVi~LptVP~~RK~N~IDmGTaDKva~a~lai~~~~~~~gi~y~~~nfIlvEiG~~yta~ 168 (343)
T PF07318_consen 90 LRKLVREL-AESNLPAYFIPGVIHLPTVPAWRKINRIDMGTADKVASAALAIYDQAEREGIEYREVNFILVEIGSGYTAA 168 (343)
T ss_pred HHHHHHHH-HhCCCCEEEeCceeccCCCchHhhhcccccCcHhHHHHHHHHHHhhHHhhCCCcccceEEEEEccCCceEE
Confidence 45677777 56688888777762 2233444443 1234445579999999999999
Q ss_pred EEeeCCeEEEEE
Q 008124 158 VIGKRGKVVFCE 169 (577)
Q Consensus 158 ~~~~~~~~~~~~ 169 (577)
+..++|+++...
T Consensus 169 iaV~~GkIVDGi 180 (343)
T PF07318_consen 169 IAVKNGKIVDGI 180 (343)
T ss_pred EEEECCeEEccc
Confidence 999999998653
No 172
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=35.69 E-value=1.6e+02 Score=31.36 Aligned_cols=80 Identities=19% Similarity=0.244 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHHH--hhhhccCCCCCCceEE
Q 008124 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFVY--MGVLQFLPVFDRLVLS 147 (577)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~e-EA~l~~--~gv~~~~~~~~~~~lv 147 (577)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ ..|+++.+.++-+ +..+.. .++..... . +.-.|
T Consensus 13 ~l~~l~~~l~~~g~~--~~lvvt~~~~~~~g~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~-~~d~I 87 (374)
T cd08189 13 SLAQLPAAISQLGVK--KVLIVTDKGLVKLGLLDKVLEALE-GAGIEYAVYDGVPPDPTIENVEAGLALYRE-N-GCDAI 87 (374)
T ss_pred HHHHHHHHHHhcCCC--eEEEEeCcchhhcccHHHHHHHHH-hcCCeEEEeCCCCCCcCHHHHHHHHHHHHh-c-CCCEE
Confidence 445555666677763 677777666665322355555544 4588888887642 222211 11111111 1 11389
Q ss_pred EEeCCCce
Q 008124 148 VDIGGGST 155 (577)
Q Consensus 148 iDIGGGSt 155 (577)
+=|||||+
T Consensus 88 IaiGGGS~ 95 (374)
T cd08189 88 LAVGGGSV 95 (374)
T ss_pred EEeCCccH
Confidence 99999995
No 173
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=35.57 E-value=2.2e+02 Score=26.08 Aligned_cols=87 Identities=15% Similarity=0.232 Sum_probs=55.3
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEe
Q 008124 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (577)
Q Consensus 14 ~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (577)
.+.++|.|+-+|=..+.+... ..-.++...+.. .-.+ ..++...+++++|++. ..+||
T Consensus 3 ~ilalD~G~KrIGvA~sd~~~-~~A~pl~~i~~~-----------~~~~-------~~~~~l~~li~~~~~~---~vVVG 60 (141)
T COG0816 3 RILALDVGTKRIGVAVSDILG-SLASPLETIKRK-----------NGKP-------QDFNALLKLVKEYQVD---TVVVG 60 (141)
T ss_pred eEEEEecCCceEEEEEecCCC-ccccchhhheec-----------cccH-------hhHHHHHHHHHHhCCC---EEEEe
Confidence 578999999999888886431 112222222111 0001 2344555677778773 45675
Q ss_pred -------ehhhhhcCChHHHHHHHHHHcCCcEEEeCh
Q 008124 94 -------TAAVRAAENKDEFVECVREKVGFEVDVLTG 123 (577)
Q Consensus 94 -------TsA~R~A~N~~~fl~~i~~~tGl~i~VIsg 123 (577)
|... .++-...|.++++++++++|...|.
T Consensus 61 lP~~m~g~~~~-~~~~~~~f~~~L~~r~~lpv~l~DE 96 (141)
T COG0816 61 LPLNMDGTEGP-RAELARKFAERLKKRFNLPVVLWDE 96 (141)
T ss_pred cCcCCCCCcch-hHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 5555 4555689999999999999998875
No 174
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=34.47 E-value=59 Score=34.77 Aligned_cols=77 Identities=13% Similarity=0.257 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHHHh--hh--hccCCCCCCceE
Q 008124 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFVYM--GV--LQFLPVFDRLVL 146 (577)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~e-EA~l~~~--gv--~~~~~~~~~~~l 146 (577)
+++..+.++.+|.. ++.+|....+.+..=.+.+.+.++ ..|+++.+.++-+ |..+.-. ++ ..... .-+
T Consensus 16 l~~l~~~l~~~g~~--~~lvv~~~~~~~~~~~~~v~~~L~-~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~----~D~ 88 (377)
T cd08176 16 IKEIGDELKNLGFK--KALIVTDKGLVKIGVVEKVTDVLD-EAGIDYVIYDGVKPNPTITNVKDGLAVFKKEG----CDF 88 (377)
T ss_pred HHHHHHHHHHhCCC--eEEEECCchHhhcCcHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcC----CCE
Confidence 44455556666763 566676665554333445555554 4589999998732 2222211 11 11121 138
Q ss_pred EEEeCCCce
Q 008124 147 SVDIGGGST 155 (577)
Q Consensus 147 viDIGGGSt 155 (577)
|+=|||||+
T Consensus 89 IIavGGGS~ 97 (377)
T cd08176 89 IISIGGGSP 97 (377)
T ss_pred EEEeCCcHH
Confidence 999999996
No 175
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=34.43 E-value=18 Score=41.77 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=19.7
Q ss_pred HHHHHHhhcccccCC--------CCchhhhHHHHHc
Q 008124 403 EAACLLHNIGHFTSK--------KGYHKQSCHIIMN 430 (577)
Q Consensus 403 ~~Aa~LHdIG~~I~~--------~~h~~Hs~yiI~n 430 (577)
-.||+|||||+++-- ..|+++++..+..
T Consensus 2 ~~~aLLHDIGK~~~Ra~~~~~~~~~h~~~g~~~~~~ 37 (648)
T TIGR02578 2 AVAALLHDIGKVIRRAGDCYNEDLKHDKTGYEFIHE 37 (648)
T ss_pred chhhhhhccchhhhhcccCcccccchhhhhHHHHHH
Confidence 468999999999974 3455555555533
No 176
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=33.61 E-value=1.6e+02 Score=31.72 Aligned_cols=78 Identities=17% Similarity=0.225 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH---HHHHHHhhh--hccCCCCCCce
Q 008124 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ---EAKFVYMGV--LQFLPVFDRLV 145 (577)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~e---EA~l~~~gv--~~~~~~~~~~~ 145 (577)
+++...+.++.+|+. ++.+|.+..+.++.=.+.+++.++.+ |+++.|-++-+ .-.-...|+ ..... . =
T Consensus 16 ~l~~l~~~~~~~g~~--r~liVTd~~~~~~g~~~~v~~~L~~~-~i~~~if~~v~p~P~~~~v~~~~~~~~~~~---~-D 88 (377)
T COG1454 16 SLKELGEEVKRLGAK--RALIVTDRGLAKLGLLDKVLDSLDAA-GIEYEVFDEVEPEPTIETVEAGAEVAREFG---P-D 88 (377)
T ss_pred hHHHHHHHHHhcCCC--ceEEEECCccccchhHHHHHHHHHhc-CCeEEEecCCCCCCCHHHHHHHHHHHHhcC---C-C
Confidence 566677777788884 78889999988888778888887654 78888876522 111111222 22222 1 2
Q ss_pred EEEEeCCCce
Q 008124 146 LSVDIGGGST 155 (577)
Q Consensus 146 lviDIGGGSt 155 (577)
.||=+||||+
T Consensus 89 ~iIalGGGS~ 98 (377)
T COG1454 89 TIIALGGGSV 98 (377)
T ss_pred EEEEeCCccH
Confidence 8999999995
No 177
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=33.30 E-value=51 Score=34.40 Aligned_cols=78 Identities=14% Similarity=0.250 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHH-HHHHHh-hhhccCCCCCCceEEEE
Q 008124 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKFVYM-GVLQFLPVFDRLVLSVD 149 (577)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~eE-A~l~~~-gv~~~~~~~~~~~lviD 149 (577)
+++..+.++.+|.. ++.+|....+++ .=.+.+.+.+++. +++.+.++.+. .-+.-. .+...+.. .+.-.|+=
T Consensus 11 l~~l~~~~~~~g~~--~~liv~~~~~~~-~~~~~v~~~l~~~--~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~IIa 84 (332)
T cd07766 11 IEKIGEEIKRGGFD--RALVVSDEGVVK-GVGEKVADSLKKL--IAVHIFDGVGPNPTFEEVKEAVERARA-AEVDAVIA 84 (332)
T ss_pred HHHHHHHHHhcCCC--eEEEEeCCchhh-hHHHHHHHHHHhc--CcEEEeCCcCCCcCHHHHHHHHHHHHh-cCcCEEEE
Confidence 34444455566763 677787777766 3344455555443 67777765432 222111 11111111 12248999
Q ss_pred eCCCce
Q 008124 150 IGGGST 155 (577)
Q Consensus 150 IGGGSt 155 (577)
|||||+
T Consensus 85 iGGGs~ 90 (332)
T cd07766 85 VGGGST 90 (332)
T ss_pred eCCchH
Confidence 999996
No 178
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=30.73 E-value=85 Score=33.97 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=17.2
Q ss_pred ceEEEEEecccceEEEEEE
Q 008124 13 TLFASIDMGTSSFKLLIIR 31 (577)
Q Consensus 13 ~~~AvIDIGSNSirL~I~~ 31 (577)
++++.|||||.+.+.+|.+
T Consensus 2 ~y~lGIDIGSTsTKaVVmd 20 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMD 20 (432)
T ss_pred ceEEEEEcCchhEEEEEEc
Confidence 3689999999999999996
No 179
>PRK12408 glucokinase; Provisional
Probab=30.32 E-value=1.9e+02 Score=30.38 Aligned_cols=106 Identities=17% Similarity=0.229 Sum_probs=56.0
Q ss_pred cccc-ccCCC-ceEEEEEecccceEEEEEEEeCCCC----EEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHH
Q 008124 4 NTSY-MQIPQ-TLFASIDMGTSSFKLLIIRAYPNGK----FLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRD 77 (577)
Q Consensus 4 ~~~~-~~~~~-~~~AvIDIGSNSirL~I~~~~~~~~----~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~ 77 (577)
.|+. ++|.+ ..+-+||||...+|+-+++.+ +. ..++...+.++. ..+.+. ++++.|.+
T Consensus 5 ~~~~~~~~~~~~~~L~~DIGGT~i~~al~d~~--g~~~~~~~~~~~~~~~t~-----------~~~~~~---~~i~~~~~ 68 (336)
T PRK12408 5 SPSAAVAVPRPESFVAADVGGTHVRVALVCAS--PDAAKPVELLDYRTYRCA-----------DYPSLA---AILADFLA 68 (336)
T ss_pred CccccccCcccccEEEEEcChhhhheeEEecc--CCccccccccceeEecCC-----------CccCHH---HHHHHHHh
Confidence 3444 45544 348899999999999999643 32 122333222222 111232 33444432
Q ss_pred HHHHcCCCcccEEEEeehhh-h-h----cCCh--HHHHHHHHHHcCCc-EEEeChHHHHHHH
Q 008124 78 IIQSHNISRDHTRAVATAAV-R-A----AENK--DEFVECVREKVGFE-VDVLTGEQEAKFV 130 (577)
Q Consensus 78 ~~~~~~v~~~~i~~vATsA~-R-~----A~N~--~~fl~~i~~~tGl~-i~VIsg~eEA~l~ 130 (577)
- ...+ .-.++|.... . . +.|- ..+-+.+++++|++ |.+++.-+=+-|.
T Consensus 69 ~--~~~~---~~igIg~pG~~~~~g~v~~~nl~w~~~~~~l~~~~~~~~V~l~ND~naaa~g 125 (336)
T PRK12408 69 E--CAPV---RRGVIASAGYALDDGRVITANLPWTLSPEQIRAQLGLQAVHLVNDFEAVAYA 125 (336)
T ss_pred c--CCCc---CEEEEEecCCceECCEEEecCCCCccCHHHHHHHcCCCeEEEeecHHHHHcc
Confidence 1 1112 2234444432 1 0 2232 22457788899995 9999987766555
No 180
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=29.95 E-value=74 Score=33.98 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeCh-HHHHHHH--HhhhhccCCCCCCceEE
Q 008124 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTG-EQEAKFV--YMGVLQFLPVFDRLVLS 147 (577)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg-~eEA~l~--~~gv~~~~~~~~~~~lv 147 (577)
++++..+.++.++.. ++.+|....+++..-.+.+.+.++ +.|+++.+.++ +.|..+. ..++...-. .+. -.|
T Consensus 10 ~~~~l~~~~~~~~~~--r~livt~~~~~~~g~~~~v~~~L~-~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~-D~I 84 (375)
T cd08194 10 AVDETGAVLADLGGK--RPLIVTDKVMVKLGLVDKLTDSLK-KEGIESAIFDDVVSEPTDESVEEGVKLAKE-GGC-DVI 84 (375)
T ss_pred HHHHHHHHHHHcCCC--eEEEEcCcchhhcchHHHHHHHHH-HCCCeEEEECCCCCCcCHHHHHHHHHHHHh-cCC-CEE
Confidence 455555666666663 667777666664322344444443 45888888875 2233222 111111111 111 389
Q ss_pred EEeCCCce
Q 008124 148 VDIGGGST 155 (577)
Q Consensus 148 iDIGGGSt 155 (577)
+=|||||+
T Consensus 85 IaiGGGS~ 92 (375)
T cd08194 85 IALGGGSP 92 (375)
T ss_pred EEeCCchH
Confidence 99999995
No 181
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=28.91 E-value=2.1e+02 Score=32.00 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=54.2
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeee-eeeeeccCCCcCCCCCHHHHHHHHHHHHH-HHHHHHHc---CCCc
Q 008124 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLK-QPVILGRDLSSSCSISTQSQARSVESLLM-FRDIIQSH---NISR 86 (577)
Q Consensus 12 ~~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k-~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~-f~~~~~~~---~v~~ 86 (577)
.....+||||.-|.-|++.+.. .+....+.. -.|||-+-.+.++.++++.+..+.+.++. +.++...+ +..
T Consensus 128 ~~~~lv~DIGGGStEl~~g~~~---~~~~~~Sl~~G~v~lt~~~~~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 203 (492)
T COG0248 128 KGDGLVIDIGGGSTELVLGDNF---EIGLLISLPLGCVRLTERFFPDDPISEENFAKARDAVREELEEIAKEYRIAGWA- 203 (492)
T ss_pred CCCEEEEEecCCeEEEEEecCC---ccceeEEeecceEEeehhhcCCCCCCHHHHHHHHHHHHHHHHhhhHHHHhhhhc-
Confidence 3457899999999999998632 232232332 35689899888899999999999988775 44444443 221
Q ss_pred ccEEEEeehhh
Q 008124 87 DHTRAVATAAV 97 (577)
Q Consensus 87 ~~i~~vATsA~ 97 (577)
.+|||+..
T Consensus 204 ---~~vg~sGT 211 (492)
T COG0248 204 ---GLVGTSGT 211 (492)
T ss_pred ---cEEEccHH
Confidence 26777643
No 182
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=28.51 E-value=61 Score=33.36 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=21.3
Q ss_pred chHHHHHHHHHHhhcccccCCCCchh
Q 008124 397 KDLEYLEAACLLHNIGHFTSKKGYHK 422 (577)
Q Consensus 397 ~~r~LL~~Aa~LHdIG~~I~~~~h~~ 422 (577)
-.+.++.++++|||+|+-.-+..--.
T Consensus 163 ~n~dli~Ag~ilHdigK~~el~~~~~ 188 (287)
T COG3481 163 VNRELIYAGAILHDIGKVLELTGPEA 188 (287)
T ss_pred ccHHHHHHHHHHhcccccccCCCccc
Confidence 34689999999999999887766544
No 183
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=28.38 E-value=95 Score=26.97 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCC---cEEEeChHHH-----HHHHHhhhhccCCCCCCceEEEEeCCCce
Q 008124 105 EFVECVREKVGF---EVDVLTGEQE-----AKFVYMGVLQFLPVFDRLVLSVDIGGGST 155 (577)
Q Consensus 105 ~fl~~i~~~tGl---~i~VIsg~eE-----A~l~~~gv~~~~~~~~~~~lviDIGGGSt 155 (577)
.+.+.++.-+|- +++.++...+ -.-.+......++..++-.++.|++|||.
T Consensus 13 g~~~~~~~i~G~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 13 GLLESAEMILGEDQDNIEAVDLYPDESIEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp HHHHHHHHHHTSTCSSEEEEEETTTSCHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred HHHHHHHHHcCCCcccEEEEECcCCCCHHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 455555555555 4555543221 12222233344443344467899999984
No 184
>PRK13321 pantothenate kinase; Reviewed
Probab=28.20 E-value=96 Score=31.22 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=23.9
Q ss_pred eEEEEeCCCceEEEEeeCCeEEEEEEEeh
Q 008124 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNL 173 (577)
Q Consensus 145 ~lviDIGGGStEl~~~~~~~~~~~~Slpl 173 (577)
.+.+||||-++-+.+++++++...+.+|-
T Consensus 2 iL~IDIGnT~ik~gl~~~~~i~~~~~~~T 30 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGDRLLRSFRLPT 30 (256)
T ss_pred EEEEEECCCeEEEEEEECCEEEEEEEEec
Confidence 47899999999999999877776666653
No 185
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=28.02 E-value=2e+02 Score=30.36 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHH-HHH----HHhhhhccCCCCCCceEE
Q 008124 73 LMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKF----VYMGVLQFLPVFDRLVLS 147 (577)
Q Consensus 73 ~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~eE-A~l----~~~gv~~~~~~~~~~~lv 147 (577)
+++.+.++.++. .++.+|....+.+. =.+.+.+.++...++++.++++-|+ .-+ ........... ++.-++
T Consensus 12 ~~l~~~~~~~~~--~k~livtd~~v~~~-~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~-~r~d~I 87 (344)
T cd08169 12 ESVESYTTRDLF--DQYFFISDSGVADL-IAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGA-NRRTAI 87 (344)
T ss_pred HHHHHHHHhcCC--CeEEEEECccHHHH-HHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCC-CCCcEE
Confidence 334444555565 36677776666551 2233333333225777788875333 222 11111222221 223588
Q ss_pred EEeCCCceE
Q 008124 148 VDIGGGSTE 156 (577)
Q Consensus 148 iDIGGGStE 156 (577)
+=|||||+-
T Consensus 88 IaiGGGsv~ 96 (344)
T cd08169 88 VAVGGGATG 96 (344)
T ss_pred EEECCcHHH
Confidence 999999863
No 186
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=27.81 E-value=2.3e+02 Score=31.65 Aligned_cols=57 Identities=11% Similarity=0.046 Sum_probs=37.7
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeee-eeeeeccCCCcCCCCCHHHHHHHHHHHH
Q 008124 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLK-QPVILGRDLSSSCSISTQSQARSVESLL 73 (577)
Q Consensus 14 ~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k-~~vrLg~~~~~~g~Ls~e~i~r~~~~L~ 73 (577)
..-+||||+-|+-+.+++ ++.+....+.. -.|||-+..+..+..+++.+.++.+.+.
T Consensus 133 ~~lviDIGGGStEl~~~~---~~~~~~~~Sl~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~ 190 (496)
T PRK11031 133 QRLVVDIGGASTELVTGT---GAQATSLFSLSMGCVTWLERYFKDRNLTQENFDAAEKAAR 190 (496)
T ss_pred CEEEEEecCCeeeEEEec---CCceeeeeEEeccchHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 368999999999999985 33333222222 2357777777777788776766555544
No 187
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=26.73 E-value=99 Score=30.81 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhccc
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH 413 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~ 413 (577)
.||-.|...+-.+..... +.. .+++-+..-|-+||+.||+|.
T Consensus 5 ~Ha~dV~q~~~~ll~~~~----~~~-------~l~~~e~~alliAal~HDv~H 46 (237)
T PF00233_consen 5 RHAADVLQFVYYLLSNGG----LRE-------YLSPLEIFALLIAALCHDVDH 46 (237)
T ss_dssp HHHHHHHHHHHHHHHHGG----GGT-------TS-HHHHHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHHHHHHccC----ccc-------cCCHHHHHHHHHHHHHhcCCC
Confidence 688777776665543321 111 357778889999999999995
No 188
>COG4680 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.02 E-value=55 Score=27.58 Aligned_cols=17 Identities=18% Similarity=0.473 Sum_probs=14.7
Q ss_pred EEEEEecccceEEEEEE
Q 008124 15 FASIDMGTSSFKLLIIR 31 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~ 31 (577)
.-|+|||.|+.||++.=
T Consensus 56 r~Vfdi~GN~yRLIvhv 72 (98)
T COG4680 56 RVVFDIGGNKYRLIVHV 72 (98)
T ss_pred eEEEEcCCCEEEEEEEE
Confidence 36999999999999873
No 189
>PF11762 Arabinose_Iso_C: L-arabinose isomerase C-terminal domain; InterPro: IPR024664 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source []. This entry represents a C-terminal non-catalytic domain in L-arabinose isomerase.; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=25.15 E-value=93 Score=27.41 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=16.0
Q ss_pred eEEEEEecccceEEEEEEEe
Q 008124 14 LFASIDMGTSSFKLLIIRAY 33 (577)
Q Consensus 14 ~~AvIDIGSNSirL~I~~~~ 33 (577)
..+.+|+| |-+||++.+++
T Consensus 32 ~~slvD~G-~rFRLi~n~v~ 50 (115)
T PF11762_consen 32 VVSLVDMG-DRFRLIVNEVD 50 (115)
T ss_dssp EEEEEE-S-SSEEEEEEEEE
T ss_pred EEEEeecC-CcEEEEEEEEE
Confidence 46899999 99999999886
No 190
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.05 E-value=80 Score=36.62 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=25.0
Q ss_pred ceEEEEeCCCceEEEEeeCCeEEEEEEEehh
Q 008124 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLG 174 (577)
Q Consensus 144 ~~lviDIGGGStEl~~~~~~~~~~~~SlplG 174 (577)
+.+++|+||-||-++.+.+|.+..+..--++
T Consensus 279 ~~i~~DmGGTStDva~i~~G~pe~~~e~~v~ 309 (674)
T COG0145 279 NAIVFDMGGTSTDVALIIDGEPEISSETEVA 309 (674)
T ss_pred CEEEEEcCCcceeeeeeecCcEEeeccceEE
Confidence 4899999999999999999887755444443
No 191
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=24.97 E-value=2.7e+02 Score=29.67 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=38.4
Q ss_pred HHHHHHHHcCCCcccEEEEeehhh-hhcCChHHHHHHHHHHcCCcEEEeChHH-----HHHHHHhhhhccCCCCCCceEE
Q 008124 74 MFRDIIQSHNISRDHTRAVATAAV-RAAENKDEFVECVREKVGFEVDVLTGEQ-----EAKFVYMGVLQFLPVFDRLVLS 147 (577)
Q Consensus 74 ~f~~~~~~~~v~~~~i~~vATsA~-R~A~N~~~fl~~i~~~tGl~i~VIsg~e-----EA~l~~~gv~~~~~~~~~~~lv 147 (577)
+..+.++.+| + ++.+|..... +...=.+.+.+.++ +.|+++.+.++-+ |.-........... .-.|
T Consensus 16 ~l~~~~~~~g-~--r~livt~~~~~~~~g~~~~v~~~L~-~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~----~D~I 87 (380)
T cd08185 16 ELGEEALKPG-K--KALIVTGNGSSKKTGYLDRVIELLK-QAGVEVVVFDKVEPNPTTTTVMEGAALAREEG----CDFV 87 (380)
T ss_pred HHHHHHHhcC-C--eEEEEeCCCchhhccHHHHHHHHHH-HcCCeEEEeCCccCCCCHHHHHHHHHHHHHcC----CCEE
Confidence 3334445556 2 5666665443 44332344554444 3588998887643 21111111222221 1389
Q ss_pred EEeCCCce
Q 008124 148 VDIGGGST 155 (577)
Q Consensus 148 iDIGGGSt 155 (577)
+=|||||+
T Consensus 88 iavGGGS~ 95 (380)
T cd08185 88 VGLGGGSS 95 (380)
T ss_pred EEeCCccH
Confidence 99999995
No 192
>PF13941 MutL: MutL protein
Probab=24.76 E-value=1.5e+02 Score=32.66 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=27.1
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeee
Q 008124 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVIL 50 (577)
Q Consensus 15 ~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrL 50 (577)
+-++||||-..+...++.. .+..+++..-+.++..
T Consensus 2 ~L~~DiGST~Tk~~l~d~~-~~~~~~ig~a~apTTv 36 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLV-DGEPRLIGQAEAPTTV 36 (457)
T ss_pred EEEEEeCCcceEEeEEecc-CCccEEEEEEeCCCCc
Confidence 3589999999999999954 5667888666666555
No 193
>PRK13318 pantothenate kinase; Reviewed
Probab=24.63 E-value=1.3e+02 Score=30.24 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=24.5
Q ss_pred eEEEEeCCCceEEEEeeCCeEEEEEEEeh
Q 008124 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNL 173 (577)
Q Consensus 145 ~lviDIGGGStEl~~~~~~~~~~~~Slpl 173 (577)
.+.+||||-++-+.+++++++....++|.
T Consensus 2 iL~IDIGnT~iK~al~d~g~i~~~~~~~t 30 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGKLVAHWRIST 30 (258)
T ss_pred EEEEEECCCcEEEEEEECCEEEEEEEEeC
Confidence 47899999999999999888877766654
No 194
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=24.47 E-value=1.5e+02 Score=31.27 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcE--EEeChHHHHHHHHhhhhccCCCCCCceEEEE
Q 008124 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV--DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVD 149 (577)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i--~VIsg~eEA~l~~~gv~~~~~~~~~~~lviD 149 (577)
+.+..+.++.+| . ++.+|....+.+ ...+.+.+.+++. |+++ .+.+|+-.-.-.-.++...-. . +.-+|+=
T Consensus 11 ~~~l~~~~~~~g-~--~~liv~~~~~~~-~~~~~v~~~l~~~-~i~~~~~~~~~~p~~~~v~~~~~~~~~-~-~~d~IIa 83 (349)
T cd08550 11 IKEIAAILSTFG-S--KVAVVGGKTVLK-KSRPRFEAALAKS-IIVVDVIVFGGECSTEEVVKALCGAEE-Q-EADVIIG 83 (349)
T ss_pred HHHHHHHHHHcC-C--eEEEEEChHHHH-HHHHHHHHHHHhc-CCeeEEEEcCCCCCHHHHHHHHHHHHh-c-CCCEEEE
Confidence 344444556677 2 455666555554 4456666666543 7644 456664111111111111111 1 1238999
Q ss_pred eCCCce
Q 008124 150 IGGGST 155 (577)
Q Consensus 150 IGGGSt 155 (577)
|||||+
T Consensus 84 vGGGs~ 89 (349)
T cd08550 84 VGGGKT 89 (349)
T ss_pred ecCcHH
Confidence 999996
No 195
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=24.37 E-value=2.9e+02 Score=29.50 Aligned_cols=76 Identities=16% Similarity=0.129 Sum_probs=40.1
Q ss_pred HHHHHHHHHc---CCCcccEEEEeehhhhh-cCChHHHHHHHHHHcCCcEEEeChHH-----HHHHHHhhhhccCCCCCC
Q 008124 73 LMFRDIIQSH---NISRDHTRAVATAAVRA-AENKDEFVECVREKVGFEVDVLTGEQ-----EAKFVYMGVLQFLPVFDR 143 (577)
Q Consensus 73 ~~f~~~~~~~---~v~~~~i~~vATsA~R~-A~N~~~fl~~i~~~tGl~i~VIsg~e-----EA~l~~~gv~~~~~~~~~ 143 (577)
++..+.++.+ |.. ++.+|....+.+ ..-.+.+.+.++ +.|+++.+.++-+ |.--.......... .
T Consensus 12 ~~l~~~l~~~~~~g~k--r~livtd~~~~~~~g~~~~v~~~L~-~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~---~ 85 (383)
T cd08186 12 EKIGEILKDLKSKGIS--KVLLVTGKSAYKKSGAWDKVEPALD-EHGIEYVLYNKVTPNPTVDQVDEAAKLGREFG---A 85 (383)
T ss_pred HHHHHHHHHhcccCCC--EEEEEcCccHHhhcChHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcC---C
Confidence 3444444444 553 566666544433 322355666654 4699999987543 11111111122221 1
Q ss_pred ceEEEEeCCCce
Q 008124 144 LVLSVDIGGGST 155 (577)
Q Consensus 144 ~~lviDIGGGSt 155 (577)
-+|+=|||||+
T Consensus 86 -D~IIaiGGGS~ 96 (383)
T cd08186 86 -QAVIAIGGGSP 96 (383)
T ss_pred -CEEEEeCCccH
Confidence 38999999995
No 196
>PRK00292 glk glucokinase; Provisional
Probab=24.32 E-value=5.4e+02 Score=26.47 Aligned_cols=122 Identities=11% Similarity=0.092 Sum_probs=0.0
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEE
Q 008124 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (577)
Q Consensus 12 ~~~~AvIDIGSNSirL~I~~~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (577)
.+.+.+||||..++|+.+++.. ++.+..-.+....- .+...+++..|.+......+ .-.+
T Consensus 1 ~~~~lgiDIGgT~i~~~l~~~~-~~~~~~~~~~~~~~----------------~~~~~~~l~~~l~~~~~~~~---~gig 60 (316)
T PRK00292 1 MKPALVGDIGGTNARFALCDWA-NGEIEQIKTYATAD----------------YPSLEDAIRAYLADEHGVQV---RSAC 60 (316)
T ss_pred CceEEEEEcCccceEEEEEecC-CCceeeeEEEecCC----------------CCCHHHHHHHHHHhccCCCC---ceEE
Q ss_pred Eeehhhhh-------cCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhh--------hhccCCCCCCceEEEEeCCC
Q 008124 92 VATAAVRA-------AENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMG--------VLQFLPVFDRLVLSVDIGGG 153 (577)
Q Consensus 92 vATsA~R~-------A~N~~~fl~~i~~~tGl~-i~VIsg~eEA~l~~~g--------v~~~~~~~~~~~lviDIGGG 153 (577)
+|....-+ ..+-....+.+++++|++ |.+.+.-+=+-|.-.- .-..-+...++.+++-+|.|
T Consensus 61 Ig~pG~vd~~~i~~~n~~w~~~~~~l~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG 138 (316)
T PRK00292 61 FAIAGPVDGDEVRMTNHHWAFSIAAMKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG 138 (316)
T ss_pred EEEeCcccCCEEEecCCCcccCHHHHHHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc
No 197
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=23.63 E-value=3.3e+02 Score=28.94 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHH-HHHH--HhhhhccCCCCCCceEE
Q 008124 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKFV--YMGVLQFLPVFDRLVLS 147 (577)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~eE-A~l~--~~gv~~~~~~~~~~~lv 147 (577)
++++..+.++.++.. ++.+|....+++..=.+.+.+.++ +.|+++.+.++-+. ..+. -.++..... . +.-.|
T Consensus 13 ~l~~l~~~l~~~~~~--~~livt~~~~~~~~~~~~v~~~L~-~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~-~-~~D~I 87 (376)
T cd08193 13 SLARLGELLAALGAK--RVLVVTDPGILKAGLIDPLLASLE-AAGIEVTVFDDVEADPPEAVVEAAVEAARA-A-GADGV 87 (376)
T ss_pred HHHHHHHHHHHcCCC--eEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEECCCCCCcCHHHHHHHHHHHHh-c-CCCEE
Confidence 344555556667763 566676666655433455555443 46888888764322 1111 111111111 1 12389
Q ss_pred EEeCCCce
Q 008124 148 VDIGGGST 155 (577)
Q Consensus 148 iDIGGGSt 155 (577)
+=|||||+
T Consensus 88 IaiGGGs~ 95 (376)
T cd08193 88 IGFGGGSS 95 (376)
T ss_pred EEeCCchH
Confidence 99999995
No 198
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=23.45 E-value=1.6e+02 Score=30.93 Aligned_cols=74 Identities=19% Similarity=0.181 Sum_probs=38.5
Q ss_pred HHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHH--HH-HhhhhccCCCCCCceEEEEeCCC
Q 008124 77 DIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAK--FV-YMGVLQFLPVFDRLVLSVDIGGG 153 (577)
Q Consensus 77 ~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~--l~-~~gv~~~~~~~~~~~lviDIGGG 153 (577)
+.++.++.. .++.+|....+.+.. ++.+.+.++ +.|+++.+.+++.+.. +. ...+...+.. +.-+|+=||||
T Consensus 16 ~~~~~~~~~-~kvlivtd~~~~~~~-~~~i~~~L~-~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~--~~d~IIaiGGG 90 (332)
T cd08549 16 PIINKIGVN-SKIMIVCGNNTYKVA-GKEIIERLE-SNNFTKEVLERDSLLIPDEYELGEVLIKLDK--DTEFLLGIGSG 90 (332)
T ss_pred HHHHHcCCC-CcEEEEECCcHHHHH-HHHHHHHHH-HcCCeEEEEecCCCCCCCHHHHHHHHHHhhc--CCCEEEEECCc
Confidence 344445532 256667766665542 455555543 4588888876543321 11 1111111111 23489999999
Q ss_pred ce
Q 008124 154 ST 155 (577)
Q Consensus 154 St 155 (577)
|+
T Consensus 91 sv 92 (332)
T cd08549 91 TI 92 (332)
T ss_pred HH
Confidence 86
No 199
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=23.42 E-value=1.2e+02 Score=32.02 Aligned_cols=76 Identities=14% Similarity=0.272 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCCcccEEEEeehhh-hhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHHHh--hhhccCCCCCCceEEEE
Q 008124 74 MFRDIIQSHNISRDHTRAVATAAV-RAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFVYM--GVLQFLPVFDRLVLSVD 149 (577)
Q Consensus 74 ~f~~~~~~~~v~~~~i~~vATsA~-R~A~N~~~fl~~i~~~tGl~i~VIsg~e-EA~l~~~--gv~~~~~~~~~~~lviD 149 (577)
+..+.++.+| . ++.+|....+ +.+.-.+.+.+.++ +.|+++.+.++-+ +..+.-. ++..... . +.-+|+=
T Consensus 16 ~l~~~~~~~g-~--r~lvVt~~~~~~~~g~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~-~~D~IIa 89 (357)
T cd08181 16 KHGEELAALG-K--RALIVTGKSSAKKNGSLDDVTKALE-ELGIEYEIFDEVEENPSLETIMEAVEIAKK-F-NADFVIG 89 (357)
T ss_pred HHHHHHHHcC-C--EEEEEeCCchHhhcCcHHHHHHHHH-HcCCeEEEeCCCCCCcCHHHHHHHHHHHHh-c-CCCEEEE
Confidence 3334455566 2 5666766554 55544466666654 4588898887532 3222211 1111111 1 1238999
Q ss_pred eCCCce
Q 008124 150 IGGGST 155 (577)
Q Consensus 150 IGGGSt 155 (577)
|||||+
T Consensus 90 vGGGSv 95 (357)
T cd08181 90 IGGGSP 95 (357)
T ss_pred eCCchH
Confidence 999995
No 200
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=23.15 E-value=1.9e+02 Score=30.66 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=34.7
Q ss_pred cchHHHHHHHHHHhhcccccCCCC-chhhhHHHHHcCCCCCCCCHHHHHHHHH--HHHhccCCC
Q 008124 396 DKDLEYLEAACLLHNIGHFTSKKG-YHKQSCHIIMNGDHLYGYSTDEIKLIAL--LTRFHRKKF 456 (577)
Q Consensus 396 ~~~r~LL~~Aa~LHdIG~~I~~~~-h~~Hs~yiI~ns~~l~G~s~~E~~~iA~--i~~yhrk~~ 456 (577)
.+.|.-+.+|++|.-++ ++..+ ..-|+..--+.. .+++.|-+..-+.+ +.+|+....
T Consensus 230 ~~ar~~l~~as~laG~a--~~~~~~g~~H~l~h~l~~--~~~i~HG~~~a~~lp~v~~~~~~~~ 289 (367)
T cd08182 230 LEARAKMAEASLLAGLA--ISNTRTTAAHAISYPLTS--RYGVPHGLACALTLPALLRINLEAL 289 (367)
T ss_pred HHHHHHHHHHHHHHHHH--HhchhHHHHHHHhchhhc--CCCCChHHHHHHHHHHHHHHhhhhC
Confidence 35677788888887444 44333 334654322333 57889988875554 777776543
No 201
>PF07288 DUF1447: Protein of unknown function (DUF1447); InterPro: IPR009907 This family consists of several bacterial proteins of around 70 residues in length. The function of this family is unknown.
Probab=22.84 E-value=81 Score=25.18 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=32.3
Q ss_pred hcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhh
Q 008124 99 AAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMG 133 (577)
Q Consensus 99 ~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~g 133 (577)
+|.+..+....++..|..+|+-|..-+++.|.|--
T Consensus 25 Ea~s~~evR~~ve~~t~yNIEfI~~L~~~~LeYEk 59 (69)
T PF07288_consen 25 EAESEVEVRKLVEDNTPYNIEFIQPLSGKHLEYEK 59 (69)
T ss_pred EcCCHHHHHHHHHhCCCcCEEEEeeccchHHHHhh
Confidence 78999999999999999999999999999998854
No 202
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=22.07 E-value=1.2e+02 Score=31.85 Aligned_cols=78 Identities=21% Similarity=0.245 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeC---hHHHHHHHHh-hhhccCCCCCCceEE
Q 008124 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLT---GEQEAKFVYM-GVLQFLPVFDRLVLS 147 (577)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~VIs---g~eEA~l~~~-gv~~~~~~~~~~~lv 147 (577)
+++..+.++.++.. ++.+|....+.++- .+.+.+.++ ..|+++.+.+ ++.+.-+.-. .+...... +.-.|
T Consensus 11 l~~l~~~~~~~~~~--~~livtd~~~~~~~-~~~v~~~l~-~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~--~~d~I 84 (348)
T cd08175 11 LERLPEILKEFGYK--KALIVADENTYAAA-GKKVEALLK-RAGVVVLLIVLPAGDLIADEKAVGRVLKELER--DTDLI 84 (348)
T ss_pred HHHHHHHHHhcCCC--cEEEEECCcHHHHH-HHHHHHHHH-HCCCeeEEeecCCCcccCCHHHHHHHHHHhhc--cCCEE
Confidence 33444555566663 56666655565544 555555554 4688776543 3212222211 11111111 22389
Q ss_pred EEeCCCce
Q 008124 148 VDIGGGST 155 (577)
Q Consensus 148 iDIGGGSt 155 (577)
+=|||||+
T Consensus 85 IaIGGGs~ 92 (348)
T cd08175 85 IAVGSGTI 92 (348)
T ss_pred EEECCcHH
Confidence 99999995
No 203
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=22.06 E-value=86 Score=33.00 Aligned_cols=19 Identities=32% Similarity=0.265 Sum_probs=15.7
Q ss_pred CcchHHHHHHHHHHhhccc
Q 008124 395 EDKDLEYLEAACLLHNIGH 413 (577)
Q Consensus 395 ~~~~r~LL~~Aa~LHdIG~ 413 (577)
++.++.-.-+||+|||+|+
T Consensus 100 ~~~W~~avf~AALlhdlgk 118 (327)
T PF07514_consen 100 EPAWRYAVFYAALLHDLGK 118 (327)
T ss_pred HhhhHHHHHHHHHHhccCc
Confidence 4456677889999999999
No 204
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=21.78 E-value=89 Score=33.41 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=49.6
Q ss_pred cCCCcccEEEEeehhhh-hcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEe
Q 008124 82 HNISRDHTRAVATAAVR-AAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (577)
Q Consensus 82 ~~v~~~~i~~vATsA~R-~A~N~~~fl~~i~~~tGl~i~VIsg~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~ 160 (577)
..+.+...=++-|++.= .-.|++...+...+...++.=-|-- ++-++. +......++|+|||+++|-++-+
T Consensus 100 Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k--~~v~~A------FA~GrstalVvDiGa~~~svsPV 171 (426)
T KOG0679|consen 100 LKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAK--TAVCTA------FANGRSTALVVDIGATHTSVSPV 171 (426)
T ss_pred hhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEec--hHHHHH------HhcCCCceEEEEecCCCceeeee
Confidence 35666555566676543 3345666777777776666544432 233332 22234458999999999999999
Q ss_pred eCCeEEE
Q 008124 161 KRGKVVF 167 (577)
Q Consensus 161 ~~~~~~~ 167 (577)
.+|-+++
T Consensus 172 ~DG~Vlq 178 (426)
T KOG0679|consen 172 HDGYVLQ 178 (426)
T ss_pred ecceEee
Confidence 9887664
No 205
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=21.65 E-value=88 Score=29.28 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhcccccCCCCchh
Q 008124 400 EYLEAACLLHNIGHFTSKKGYHK 422 (577)
Q Consensus 400 ~LL~~Aa~LHdIG~~I~~~~h~~ 422 (577)
.+|..+|++||.|+.+...+-.+
T Consensus 116 dWlHLtaLiHDLGKvl~f~GepQ 138 (204)
T KOG1573|consen 116 DWLHLTALIHDLGKVLAFGGEPQ 138 (204)
T ss_pred cHHHHHHHHHHHHHHHHhcCCcc
Confidence 58999999999999886655443
No 206
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=21.30 E-value=1.7e+02 Score=27.22 Aligned_cols=70 Identities=17% Similarity=0.299 Sum_probs=37.7
Q ss_pred eccCCC--cCCCCCHHHHHHHHHHHHHHHHHH-HHc--CCCcccEEEEeehhhhh---cCChHHHHHHHHHHcCCcEEE
Q 008124 50 LGRDLS--SSCSISTQSQARSVESLLMFRDII-QSH--NISRDHTRAVATAAVRA---AENKDEFVECVREKVGFEVDV 120 (577)
Q Consensus 50 Lg~~~~--~~g~Ls~e~i~r~~~~L~~f~~~~-~~~--~v~~~~i~~vATsA~R~---A~N~~~fl~~i~~~tGl~i~V 120 (577)
.|.|-. .+..++....+.+.+.|..|++.+ +.+ ...|.+|..|+.+-... -.-+..|...+.++ |++.+|
T Consensus 62 VGHG~~~~~~~~l~g~~a~~La~~l~~~~~~l~~~~~~~~~P~~IsLvGC~l~~~~~~~~fa~~f~~~L~~~-gi~~~V 139 (157)
T PF11713_consen 62 VGHGRDEFNNQTLAGYSADELANKLIKFKQQLKQKYGINISPKKISLVGCSLADNNKQESFALQFAQALKKQ-GINASV 139 (157)
T ss_dssp E--EESSTSSSEETTEEHHHHHHHHHHHHHHHHHHHTTT--ESEEEEESSS-S-TTGGGSHHHHHHHHHHHH-HHCEEE
T ss_pred EEeCCCcCCCceeCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEEecccCCcccccHHHHHHHHHHhc-CCcceE
Confidence 355533 444555555666667776666543 344 34578999999877665 11145566666655 665554
No 207
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=21.20 E-value=1.9e+02 Score=25.94 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=51.5
Q ss_pred EEEecccceEEEEEEEeCCCCE-EEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEEe--
Q 008124 17 SIDMGTSSFKLLIIRAYPNGKF-LTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA-- 93 (577)
Q Consensus 17 vIDIGSNSirL~I~~~~~~~~~-~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA-- 93 (577)
+||.|+..|=+.+.+. .+.+ .++..... .+ ....+..+.+++++|++. -.+||
T Consensus 2 aiD~G~kriGvA~~d~--~~~~a~pl~~i~~---------~~----------~~~~~~~l~~~i~~~~~~---~iVvGlP 57 (130)
T TIGR00250 2 GLDFGTKSIGVAGQDI--TGWTAQGIPTIKA---------QD----------GEPDWSRIEELLKEWTPD---KIVVGLP 57 (130)
T ss_pred eEccCCCeEEEEEECC--CCCEEeceEEEEe---------cC----------CcHHHHHHHHHHHHcCCC---EEEEecc
Confidence 6899999887777643 2322 22221111 00 013456777788899984 35677
Q ss_pred ----ehhhhhcCChHHHHHHHHHHcCCcEEEeCh
Q 008124 94 ----TAAVRAAENKDEFVECVREKVGFEVDVLTG 123 (577)
Q Consensus 94 ----TsA~R~A~N~~~fl~~i~~~tGl~i~VIsg 123 (577)
-+.=..|.-...|.+++++.+|++|..++.
T Consensus 58 ~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DE 91 (130)
T TIGR00250 58 LNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDE 91 (130)
T ss_pred CCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 122233444568999999999999998874
No 208
>PF10298 WhiA_N: WhiA N-terminal LAGLIDADG-like domain; InterPro: IPR018478 This entry represents the N-terminal domain of sporulation factor WhiA []. This domain is related to the LAGLIDADG homing endonuclease domain while the C-terminal domain of WhiA is predicted to be a DNA binding helix-turn-helix domain [].; PDB: 3HYI_A 3HYJ_D.
Probab=21.07 E-value=3.3e+02 Score=22.28 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcceEEEEeCCeeEEEEeecccCCCCCCCCCCCCcccHHHHHHHHHHHHHHHcCceEE
Q 008124 474 KFRVLCAIVRLSVILQQNDCVNLRGVDFFHSYEGFKLQVIKEARDQPYLPGSSQPTLDNIEAELEKELEHFKKIFKQELL 553 (577)
Q Consensus 474 ~v~kL~~iLRlA~~Ld~s~~~~i~~i~l~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~fg~~l~ 553 (577)
+.+.|+++||++-.|..+ .+ ++.| .++. |. ..-+++-..++++.|+.+..
T Consensus 4 ~~AELaAlir~~G~l~~~-~~------------~~~l-~~~t---------------en-~~vARri~~llk~~f~i~~e 53 (86)
T PF10298_consen 4 RIAELAALIRFSGSLSIS-NG------------RISL-EIST---------------EN-AAVARRIYSLLKKLFDIDPE 53 (86)
T ss_dssp HHHHHHHHHHHHEEECTT-TT------------EEEE---EE---------------S--HHHHHHHHHHHHHTT--EEE
T ss_pred HHHHHHHHHHhCCEEEEE-CC------------EEEE-EEEe---------------CC-HHHHHHHHHHHHHHhCCCeE
Confidence 456799999999887755 21 2333 2221 11 25788999999999999999
Q ss_pred EEeecCCCccccCcc
Q 008124 554 VVGSSSSSNDRKDKF 568 (577)
Q Consensus 554 i~~~~~~~~~~~~~~ 568 (577)
+.+..........-|
T Consensus 54 i~v~~~~~l~k~~~Y 68 (86)
T PF10298_consen 54 ISVRRSRNLKKNNVY 68 (86)
T ss_dssp EEEEE-SSSBEEE--
T ss_pred EEEecCCCCCCCCcc
Confidence 999887654443333
No 209
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=20.91 E-value=88 Score=29.66 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCCchhh
Q 008124 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQ 423 (577)
Q Consensus 361 ~ha~~V~~~a~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aa~LHdIG~~I~~~~h~~H 423 (577)
.|+..++.+|..|...+ +. .......+|++|||||..+-.....++
T Consensus 97 ~~s~~~a~~a~~la~~~----~~-------------~~~~~a~~~gLL~~iG~l~l~~~~~~~ 142 (196)
T PF08668_consen 97 RHSLAAAAIARRLAREL----GF-------------DDPDEAYLAGLLHDIGKLLLLSLFPEY 142 (196)
T ss_dssp HHHHHHHHHHHHHHHHC----TC-------------CHHHHHHHHHHHTTHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHc----CC-------------CCHHHHHHHHHHHHHhHHHHHHHhHHH
Confidence 56777777777654333 21 123568899999999998866555443
No 210
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=20.90 E-value=1e+03 Score=25.24 Aligned_cols=26 Identities=19% Similarity=0.498 Sum_probs=21.1
Q ss_pred CCceEEEEeCCCceEEEEeeCCeEEEE
Q 008124 142 DRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (577)
Q Consensus 142 ~~~~lviDIGGGStEl~~~~~~~~~~~ 168 (577)
+.+.+++-+|+|.. .....+|+++..
T Consensus 173 ~~~~I~~hLGtGig-~~ai~~Gk~vdg 198 (351)
T TIGR02707 173 EMNLIVAHMGGGIS-VAAHRKGRVIDV 198 (351)
T ss_pred cCCEEEEEeCCCce-eeeEECCEEEEc
Confidence 34789999999999 777888887654
No 211
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=20.27 E-value=4.4e+02 Score=23.75 Aligned_cols=86 Identities=16% Similarity=0.292 Sum_probs=54.9
Q ss_pred eEEEEEecccceEEEEEEEeCCCC-EEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccEEEE
Q 008124 14 LFASIDMGTSSFKLLIIRAYPNGK-FLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (577)
Q Consensus 14 ~~AvIDIGSNSirL~I~~~~~~~~-~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (577)
++-+||.|+-.|=+.|.+- .+. -.++...... ... ..+..+.+++++|+++ ..+|
T Consensus 2 riL~lD~G~kriGiAvsd~--~~~~a~pl~~i~~~---~~~----------------~~~~~l~~li~~~~i~---~iVv 57 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDP--LGIIASPLETIPRR---NRE----------------KDIEELKKLIEEYQID---GIVV 57 (135)
T ss_dssp EEEEEEECSSEEEEEEEET--TTSSEEEEEEEEEC---CCC----------------CCHHHHHHHHHHCCEC---EEEE
T ss_pred eEEEEEeCCCeEEEEEecC--CCCeEeeeEEEECC---CCc----------------hHHHHHHHHHHHhCCC---EEEE
Confidence 4678999999998888864 333 2444333211 000 2345667788889884 4567
Q ss_pred eehh------hhhcCChHHHHHHHHHHc-CCcEEEeCh
Q 008124 93 ATAA------VRAAENKDEFVECVREKV-GFEVDVLTG 123 (577)
Q Consensus 93 ATsA------~R~A~N~~~fl~~i~~~t-Gl~i~VIsg 123 (577)
|--- =..|+....|.+++++.+ |++|...+.
T Consensus 58 GlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DE 95 (135)
T PF03652_consen 58 GLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDE 95 (135)
T ss_dssp EEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEEC
T ss_pred eCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECC
Confidence 6311 112344578999999999 999998874
No 212
>PF06116 RinB: Transcriptional activator RinB; InterPro: IPR009300 This family consists of several Staphylococcus aureus bacteriophage RinB proteins and related sequences from their host. The int gene of staphylococcal bacteriophage phi 11 is the only viral gene responsible for the integrative recombination of phi 11. rinA and rinB, are both required to activate expression of the int gene [].
Probab=20.27 E-value=39 Score=25.33 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=21.5
Q ss_pred HcCceEEEEeecCCCccccCcccc
Q 008124 547 IFKQELLVVGSSSSSNDRKDKFTC 570 (577)
Q Consensus 547 ~fg~~l~i~~~~~~~~~~~~~~~~ 570 (577)
-.++++.+...+.++||+|..|.-
T Consensus 20 ~i~~el~i~ltanD~VeaP~DF~~ 43 (53)
T PF06116_consen 20 YITEELYIKLTANDDVEAPKDFAK 43 (53)
T ss_pred HHHHHheeeeecCccccCchhhcc
Confidence 348899999999999999999976
No 213
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=20.26 E-value=4.2e+02 Score=27.98 Aligned_cols=71 Identities=28% Similarity=0.337 Sum_probs=35.0
Q ss_pred HHHHcCCCcccEEEEeehhhhhcCChHHHHHHHH---HHcCCcEEE--eCh-HHHH----HHHHhhhhccCCCCCCceEE
Q 008124 78 IIQSHNISRDHTRAVATAAVRAAENKDEFVECVR---EKVGFEVDV--LTG-EQEA----KFVYMGVLQFLPVFDRLVLS 147 (577)
Q Consensus 78 ~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~i~---~~tGl~i~V--Isg-~eEA----~l~~~gv~~~~~~~~~~~lv 147 (577)
.++.++. .++.+|....+.+ .+.+++. +..|+++.+ +++ +.+. -............ ++.-+|
T Consensus 25 ~l~~~~~--~~~livtd~~~~~-----~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~-~r~d~I 96 (358)
T PRK00002 25 LLAPLKG--KKVAIVTDETVAP-----LYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGL-DRSDTL 96 (358)
T ss_pred HHHhcCC--CeEEEEECCchHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCC-CCCCEE
Confidence 3344443 3566676666644 2444443 345887774 443 2222 2222222222221 122489
Q ss_pred EEeCCCceE
Q 008124 148 VDIGGGSTE 156 (577)
Q Consensus 148 iDIGGGStE 156 (577)
+=|||||+=
T Consensus 97 IavGGGsv~ 105 (358)
T PRK00002 97 IALGGGVIG 105 (358)
T ss_pred EEEcCcHHH
Confidence 999999963
Done!