Query 008128
Match_columns 577
No_of_seqs 299 out of 1657
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 19:49:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00079 NADP-specific glutama 100.0 3E-122 8E-127 986.7 44.2 383 190-572 11-394 (454)
2 PRK14030 glutamate dehydrogena 100.0 2E-117 5E-122 949.8 42.6 382 193-574 3-387 (445)
3 PRK14031 glutamate dehydrogena 100.0 2E-114 5E-119 927.4 43.1 380 193-573 3-385 (444)
4 COG0334 GdhA Glutamate dehydro 100.0 1E-111 3E-116 889.9 35.9 350 207-570 1-351 (411)
5 PRK09414 glutamate dehydrogena 100.0 6E-110 1E-114 895.1 42.7 378 192-573 6-386 (445)
6 KOG2250 Glutamate/leucine/phen 100.0 1E-108 2E-113 873.3 35.1 397 157-573 1-408 (514)
7 PLN02477 glutamate dehydrogena 100.0 7E-107 2E-111 864.5 40.2 352 209-573 2-353 (410)
8 PTZ00324 glutamate dehydrogena 100.0 1.5E-69 3.3E-74 617.6 38.5 444 105-572 304-846 (1002)
9 cd05313 NAD_bind_2_Glu_DH NAD( 100.0 1.4E-56 3E-61 452.2 21.2 195 379-573 1-196 (254)
10 PF00208 ELFV_dehydrog: Glutam 100.0 5.7E-49 1.2E-53 395.3 10.8 184 386-572 1-188 (244)
11 cd01076 NAD_bind_1_Glu_DH NAD( 100.0 1.2E-47 2.5E-52 382.0 19.5 176 386-571 1-176 (227)
12 cd05211 NAD_bind_Glu_Leu_Phe_V 100.0 2.8E-45 6E-50 362.8 18.2 169 394-573 1-169 (217)
13 PF02812 ELFV_dehydrog_N: Glu/ 100.0 6.1E-45 1.3E-49 335.1 13.4 131 241-371 1-131 (131)
14 cd01075 NAD_bind_Leu_Phe_Val_D 100.0 5.8E-33 1.3E-37 271.3 17.3 153 392-572 2-157 (200)
15 COG2902 NAD-specific glutamate 99.9 1.1E-26 2.3E-31 268.7 20.0 383 156-569 673-1160(1592)
16 PF05088 Bac_GDH: Bacterial NA 99.9 8.8E-24 1.9E-28 252.7 21.5 403 122-569 588-1098(1528)
17 smart00839 ELFV_dehydrog Gluta 99.9 2.2E-23 4.9E-28 184.4 6.8 71 499-572 3-73 (102)
18 PRK08374 homoserine dehydrogen 99.0 1.2E-09 2.6E-14 115.4 9.5 129 417-552 3-146 (336)
19 PRK06392 homoserine dehydrogen 98.9 2.7E-09 5.9E-14 112.4 9.2 131 417-559 1-147 (326)
20 cd05191 NAD_bind_amino_acid_DH 98.6 3.8E-07 8.3E-12 77.8 10.5 55 394-448 1-55 (86)
21 PRK06270 homoserine dehydrogen 98.6 2.2E-07 4.9E-12 98.3 10.1 129 417-552 3-149 (341)
22 PLN02700 homoserine dehydrogen 97.9 5.9E-05 1.3E-09 81.4 9.8 145 417-564 4-175 (377)
23 PRK06813 homoserine dehydrogen 97.8 5.8E-05 1.3E-09 80.6 9.0 131 417-559 3-153 (346)
24 cd01065 NAD_bind_Shikimate_DH 97.5 0.0028 6E-08 58.4 14.4 132 402-554 5-139 (155)
25 PRK09436 thrA bifunctional asp 97.5 0.00041 8.9E-09 81.7 10.7 144 402-557 451-610 (819)
26 TIGR02853 spore_dpaA dipicolin 97.5 0.001 2.2E-08 69.2 12.0 132 392-556 130-269 (287)
27 PF00670 AdoHcyase_NAD: S-aden 97.5 0.00056 1.2E-08 66.0 9.2 112 407-548 14-126 (162)
28 PRK08306 dipicolinate synthase 97.3 0.0019 4.2E-08 67.4 10.8 128 391-551 130-260 (296)
29 cd05311 NAD_bind_2_malic_enz N 97.1 0.01 2.2E-07 59.7 13.3 141 395-553 4-150 (226)
30 PRK05476 S-adenosyl-L-homocyst 96.9 0.0029 6.3E-08 69.5 8.6 118 391-539 190-309 (425)
31 PRK09466 metL bifunctional asp 96.9 0.0044 9.6E-08 73.1 10.5 144 402-559 444-606 (810)
32 PTZ00075 Adenosylhomocysteinas 96.9 0.0036 7.8E-08 69.6 8.9 107 396-530 233-341 (476)
33 COG0373 HemA Glutamyl-tRNA red 96.7 0.011 2.3E-07 64.9 10.8 115 397-535 159-278 (414)
34 cd00401 AdoHcyase S-adenosyl-L 96.6 0.0089 1.9E-07 65.5 9.2 105 395-530 184-289 (413)
35 PRK00048 dihydrodipicolinate r 96.4 0.017 3.8E-07 59.0 9.8 111 417-556 2-119 (257)
36 COG0460 ThrA Homoserine dehydr 96.4 0.0092 2E-07 63.7 8.0 119 416-553 3-138 (333)
37 cd01080 NAD_bind_m-THF_DH_Cycl 96.4 0.042 9E-07 53.2 11.6 55 389-448 21-76 (168)
38 PRK12549 shikimate 5-dehydroge 96.4 0.065 1.4E-06 55.8 13.9 135 395-554 110-250 (284)
39 PF01488 Shikimate_DH: Shikima 96.4 0.015 3.2E-07 53.7 8.0 106 411-538 7-117 (135)
40 PRK07232 bifunctional malic en 96.3 0.066 1.4E-06 62.8 15.0 124 391-534 160-287 (752)
41 PLN02516 methylenetetrahydrofo 96.3 0.1 2.2E-06 55.2 14.9 53 391-448 146-199 (299)
42 PLN03129 NADP-dependent malic 96.3 0.22 4.7E-06 56.9 18.2 179 323-533 244-438 (581)
43 PLN02616 tetrahydrofolate dehy 96.3 0.09 1.9E-06 56.8 14.5 53 391-448 210-263 (364)
44 COG0281 SfcA Malic enzyme [Ene 96.3 0.044 9.4E-07 60.1 12.0 125 392-533 175-302 (432)
45 PF03447 NAD_binding_3: Homose 96.1 0.0069 1.5E-07 54.0 4.3 82 423-528 1-88 (117)
46 PF03446 NAD_binding_2: NAD bi 96.0 0.027 5.9E-07 53.3 8.3 112 417-554 2-119 (163)
47 PLN02897 tetrahydrofolate dehy 96.0 0.17 3.8E-06 54.4 14.7 95 391-533 193-289 (345)
48 PRK14169 bifunctional 5,10-met 96.0 0.17 3.8E-06 53.0 14.4 53 391-448 135-188 (282)
49 smart00846 Gp_dh_N Glyceraldeh 95.9 0.049 1.1E-06 51.8 9.4 105 417-532 1-120 (149)
50 PRK09599 6-phosphogluconate de 95.9 0.043 9.2E-07 57.1 9.8 117 417-562 1-125 (301)
51 TIGR00936 ahcY adenosylhomocys 95.9 0.038 8.2E-07 60.6 9.7 121 394-545 176-299 (406)
52 cd05212 NAD_bind_m-THF_DH_Cycl 95.9 0.11 2.4E-06 49.0 11.5 93 393-533 9-103 (140)
53 PRK13535 erythrose 4-phosphate 95.9 0.034 7.3E-07 59.6 9.0 106 417-532 2-124 (336)
54 COG0057 GapA Glyceraldehyde-3- 95.9 0.059 1.3E-06 57.5 10.5 107 417-533 2-124 (335)
55 PF01113 DapB_N: Dihydrodipico 95.8 0.026 5.6E-07 51.5 6.9 116 417-553 1-123 (124)
56 PRK14186 bifunctional 5,10-met 95.8 0.22 4.8E-06 52.6 14.5 52 392-448 138-190 (297)
57 PLN02494 adenosylhomocysteinas 95.8 0.049 1.1E-06 60.8 9.9 116 394-540 235-352 (477)
58 PRK14176 bifunctional 5,10-met 95.8 0.052 1.1E-06 57.0 9.6 52 392-448 144-196 (287)
59 PRK14182 bifunctional 5,10-met 95.7 0.26 5.6E-06 51.8 14.6 52 392-448 137-189 (282)
60 PRK13304 L-aspartate dehydroge 95.7 0.04 8.6E-07 56.6 8.4 110 417-552 2-119 (265)
61 COG0111 SerA Phosphoglycerate 95.7 0.044 9.6E-07 58.3 9.0 36 411-446 137-172 (324)
62 PRK06436 glycerate dehydrogena 95.7 0.11 2.3E-06 54.9 11.7 34 413-446 119-152 (303)
63 PRK13302 putative L-aspartate 95.7 0.062 1.3E-06 55.6 9.7 114 414-552 4-122 (271)
64 PRK08410 2-hydroxyacid dehydro 95.6 0.093 2E-06 55.3 11.1 34 412-445 141-174 (311)
65 PRK06487 glycerate dehydrogena 95.6 0.08 1.7E-06 55.9 10.5 35 412-446 144-178 (317)
66 PRK13243 glyoxylate reductase; 95.6 0.058 1.3E-06 57.4 9.5 37 411-448 145-181 (333)
67 PF00044 Gp_dh_N: Glyceraldehy 95.6 0.033 7.2E-07 53.2 6.9 107 417-532 1-121 (151)
68 TIGR01532 E4PD_g-proteo D-eryt 95.6 0.063 1.4E-06 57.2 9.6 105 418-532 1-122 (325)
69 cd00762 NAD_bind_malic_enz NAD 95.6 0.087 1.9E-06 54.5 10.2 125 395-532 4-142 (254)
70 cd05312 NAD_bind_1_malic_enz N 95.5 0.15 3.2E-06 53.5 11.7 125 395-533 4-142 (279)
71 PRK12861 malic enzyme; Reviewe 95.5 0.33 7.2E-06 57.2 15.7 173 328-538 119-297 (764)
72 PRK14167 bifunctional 5,10-met 95.5 0.35 7.6E-06 51.1 14.5 52 392-448 137-193 (297)
73 PRK14177 bifunctional 5,10-met 95.4 0.085 1.8E-06 55.3 9.8 95 391-533 138-234 (284)
74 PRK13529 malate dehydrogenase; 95.4 0.51 1.1E-05 53.8 16.3 186 323-533 219-419 (563)
75 PF02826 2-Hacid_dh_C: D-isome 95.3 0.027 5.9E-07 54.3 5.4 111 410-549 30-147 (178)
76 PTZ00317 NADP-dependent malic 95.3 0.53 1.2E-05 53.6 16.2 183 323-533 221-418 (559)
77 TIGR00507 aroE shikimate 5-deh 95.3 0.4 8.7E-06 49.2 14.2 133 395-554 100-237 (270)
78 PRK15438 erythronate-4-phospha 95.3 0.036 7.9E-07 60.2 6.6 44 402-445 102-145 (378)
79 PRK14188 bifunctional 5,10-met 95.2 0.25 5.5E-06 52.1 12.6 52 391-447 137-189 (296)
80 cd01078 NAD_bind_H4MPT_DH NADP 95.2 0.062 1.3E-06 52.0 7.5 54 394-448 6-60 (194)
81 PRK14181 bifunctional 5,10-met 95.2 0.54 1.2E-05 49.6 14.8 52 392-448 133-189 (287)
82 PRK00676 hemA glutamyl-tRNA re 95.2 0.13 2.8E-06 55.2 10.3 103 398-534 157-264 (338)
83 PLN03139 formate dehydrogenase 95.1 0.1 2.2E-06 56.9 9.5 37 411-448 194-230 (386)
84 PRK06932 glycerate dehydrogena 95.1 0.16 3.5E-06 53.6 10.8 34 412-445 143-176 (314)
85 PRK14185 bifunctional 5,10-met 95.1 0.64 1.4E-05 49.1 14.9 52 392-448 137-193 (293)
86 PRK00258 aroE shikimate 5-dehy 95.0 0.52 1.1E-05 48.7 14.1 134 395-554 105-244 (278)
87 PRK14187 bifunctional 5,10-met 95.0 0.11 2.3E-06 54.8 9.1 52 392-448 140-192 (294)
88 PLN02358 glyceraldehyde-3-phos 95.0 0.14 3E-06 55.0 10.0 107 417-532 6-128 (338)
89 PRK14172 bifunctional 5,10-met 95.0 0.14 3.1E-06 53.5 9.8 52 392-448 138-190 (278)
90 PRK00257 erythronate-4-phospha 94.9 0.052 1.1E-06 59.0 6.6 44 404-448 104-147 (381)
91 PRK14192 bifunctional 5,10-met 94.9 0.13 2.9E-06 53.7 9.3 52 392-448 139-191 (283)
92 PRK14166 bifunctional 5,10-met 94.9 0.13 2.8E-06 53.9 9.2 52 392-448 137-189 (282)
93 PRK12862 malic enzyme; Reviewe 94.9 0.25 5.5E-06 58.2 12.5 138 392-551 169-313 (763)
94 PF03949 Malic_M: Malic enzyme 94.8 0.066 1.4E-06 55.4 6.8 126 395-533 4-143 (255)
95 PRK15425 gapA glyceraldehyde-3 94.8 0.16 3.6E-06 54.3 9.9 105 417-531 3-121 (331)
96 PRK14168 bifunctional 5,10-met 94.8 0.66 1.4E-05 49.1 14.3 52 392-448 141-197 (297)
97 PRK14175 bifunctional 5,10-met 94.8 0.073 1.6E-06 55.9 7.1 52 392-448 138-190 (286)
98 PRK07574 formate dehydrogenase 94.8 0.15 3.2E-06 55.7 9.6 34 412-445 188-221 (385)
99 COG0499 SAM1 S-adenosylhomocys 94.7 0.15 3.4E-06 55.1 9.4 115 394-540 190-307 (420)
100 PRK14173 bifunctional 5,10-met 94.7 0.18 4E-06 53.0 9.8 53 391-448 134-187 (287)
101 COG1748 LYS9 Saccharopine dehy 94.7 0.11 2.4E-06 56.7 8.4 126 417-566 2-134 (389)
102 PRK14179 bifunctional 5,10-met 94.6 0.41 8.8E-06 50.4 12.1 53 391-448 137-190 (284)
103 TIGR01809 Shik-DH-AROM shikima 94.6 0.68 1.5E-05 48.1 13.6 136 395-554 106-254 (282)
104 PF13241 NAD_binding_7: Putati 94.6 0.04 8.6E-07 48.7 3.9 37 412-448 3-39 (103)
105 cd05213 NAD_bind_Glutamyl_tRNA 94.6 0.26 5.7E-06 51.7 10.7 111 403-539 166-282 (311)
106 PTZ00023 glyceraldehyde-3-phos 94.6 0.17 3.7E-06 54.3 9.3 106 417-531 3-122 (337)
107 PLN03096 glyceraldehyde-3-phos 94.5 0.18 3.9E-06 55.2 9.6 105 417-531 61-182 (395)
108 TIGR01327 PGDH D-3-phosphoglyc 94.5 0.26 5.6E-06 55.7 11.1 35 411-445 133-167 (525)
109 PF01408 GFO_IDH_MocA: Oxidore 94.4 0.18 3.8E-06 44.4 7.8 110 417-551 1-117 (120)
110 PF10727 Rossmann-like: Rossma 94.4 0.1 2.2E-06 48.5 6.4 109 416-550 10-122 (127)
111 TIGR01534 GAPDH-I glyceraldehy 94.4 0.2 4.4E-06 53.5 9.3 103 418-531 1-122 (327)
112 PRK07403 glyceraldehyde-3-phos 94.3 0.22 4.8E-06 53.5 9.6 105 417-531 2-122 (337)
113 PRK14170 bifunctional 5,10-met 94.3 0.2 4.3E-06 52.7 8.9 52 392-448 137-189 (284)
114 PRK08223 hypothetical protein; 94.2 0.17 3.6E-06 53.3 8.2 37 413-449 24-60 (287)
115 PF01118 Semialdhyde_dh: Semia 94.2 0.12 2.7E-06 46.5 6.4 110 418-554 1-113 (121)
116 PF02882 THF_DHG_CYH_C: Tetrah 94.2 0.14 3.1E-06 49.4 7.1 54 390-448 14-68 (160)
117 PRK10792 bifunctional 5,10-met 94.2 0.14 2.9E-06 53.9 7.5 52 392-448 139-191 (285)
118 PRK14180 bifunctional 5,10-met 94.2 0.23 4.9E-06 52.2 9.1 95 391-533 137-233 (282)
119 PRK08955 glyceraldehyde-3-phos 94.2 0.32 6.9E-06 52.2 10.3 106 417-532 3-121 (334)
120 TIGR02356 adenyl_thiF thiazole 94.1 0.079 1.7E-06 52.3 5.3 37 413-449 18-54 (202)
121 PRK09424 pntA NAD(P) transhydr 94.1 0.35 7.5E-06 54.7 10.9 35 413-448 162-196 (509)
122 PLN02272 glyceraldehyde-3-phos 94.1 0.23 5.1E-06 54.7 9.3 105 417-530 86-206 (421)
123 cd01079 NAD_bind_m-THF_DH NAD 93.9 0.16 3.5E-06 50.7 6.9 144 392-568 33-186 (197)
124 PRK14171 bifunctional 5,10-met 93.9 0.27 5.8E-06 51.8 8.8 52 392-448 139-191 (288)
125 PRK14194 bifunctional 5,10-met 93.9 0.2 4.3E-06 53.1 7.9 52 392-448 139-191 (301)
126 PRK06141 ornithine cyclodeamin 93.8 0.63 1.4E-05 49.0 11.7 117 414-554 123-243 (314)
127 PRK09310 aroDE bifunctional 3- 93.8 0.9 2E-05 50.8 13.5 124 394-554 314-439 (477)
128 PRK06349 homoserine dehydrogen 93.8 0.1 2.2E-06 57.3 6.0 108 417-551 4-127 (426)
129 TIGR01035 hemA glutamyl-tRNA r 93.7 0.48 1E-05 52.0 11.0 104 412-539 176-286 (417)
130 TIGR00036 dapB dihydrodipicoli 93.7 0.46 1E-05 49.0 10.2 117 417-554 2-127 (266)
131 PRK14193 bifunctional 5,10-met 93.7 0.38 8.3E-06 50.6 9.7 52 392-448 138-192 (284)
132 TIGR00872 gnd_rel 6-phosphoglu 93.7 0.33 7.2E-06 50.5 9.3 109 417-552 1-116 (298)
133 PTZ00142 6-phosphogluconate de 93.7 0.27 5.9E-06 54.9 9.1 115 418-552 3-124 (470)
134 PRK14189 bifunctional 5,10-met 93.6 0.2 4.3E-06 52.6 7.5 53 391-448 137-190 (285)
135 KOG0068 D-3-phosphoglycerate d 93.5 0.12 2.5E-06 55.6 5.6 35 410-444 140-174 (406)
136 PLN02819 lysine-ketoglutarate 93.5 0.19 4.1E-06 61.0 8.0 121 414-555 567-704 (1042)
137 PRK13303 L-aspartate dehydroge 93.5 0.22 4.7E-06 51.3 7.4 88 417-529 2-91 (265)
138 PRK14191 bifunctional 5,10-met 93.5 0.27 5.8E-06 51.7 8.0 53 391-448 136-189 (285)
139 PRK14178 bifunctional 5,10-met 93.4 0.9 2E-05 47.7 11.7 53 391-448 131-184 (279)
140 PRK11579 putative oxidoreducta 93.3 0.52 1.1E-05 49.8 10.1 109 417-552 5-120 (346)
141 PRK07729 glyceraldehyde-3-phos 93.3 0.43 9.4E-06 51.4 9.5 105 417-531 3-121 (343)
142 TIGR01546 GAPDH-II_archae glyc 93.3 0.21 4.6E-06 53.6 7.1 96 419-531 1-107 (333)
143 cd00755 YgdL_like Family of ac 93.2 0.26 5.7E-06 50.1 7.4 36 414-449 9-44 (231)
144 PRK12749 quinate/shikimate deh 93.2 2.2 4.7E-05 44.7 14.4 138 396-554 108-256 (288)
145 COG5322 Predicted dehydrogenas 93.2 0.45 9.7E-06 50.0 8.9 51 393-443 144-195 (351)
146 COG0169 AroE Shikimate 5-dehyd 93.1 2.3 4.9E-05 44.8 14.2 135 396-553 108-248 (283)
147 TIGR01505 tartro_sem_red 2-hyd 93.1 0.35 7.6E-06 49.8 8.2 109 418-552 1-116 (291)
148 PLN02237 glyceraldehyde-3-phos 93.1 0.39 8.5E-06 53.3 8.9 105 417-531 76-197 (442)
149 PRK06719 precorrin-2 dehydroge 93.1 0.14 2.9E-06 49.0 4.7 34 412-445 9-42 (157)
150 PF03807 F420_oxidored: NADP o 93.1 0.31 6.6E-06 41.5 6.5 89 418-532 1-95 (96)
151 PRK15116 sulfur acceptor prote 92.9 0.4 8.7E-06 49.9 8.3 37 413-449 27-63 (268)
152 COG2344 AT-rich DNA-binding pr 92.9 0.35 7.6E-06 48.3 7.4 53 395-448 64-118 (211)
153 PRK13301 putative L-aspartate 92.9 0.45 9.7E-06 49.6 8.5 87 417-530 3-93 (267)
154 PLN02520 bifunctional 3-dehydr 92.9 1.3 2.9E-05 50.1 13.0 136 394-554 351-498 (529)
155 PRK08300 acetaldehyde dehydrog 92.9 0.24 5.1E-06 52.5 6.6 123 415-559 3-137 (302)
156 PRK15461 NADH-dependent gamma- 92.8 0.39 8.5E-06 49.9 8.2 108 418-551 3-117 (296)
157 PLN02928 oxidoreductase family 92.8 0.15 3.3E-06 54.5 5.3 35 411-445 154-188 (347)
158 PRK06718 precorrin-2 dehydroge 92.8 0.15 3.3E-06 50.6 4.8 35 412-446 6-40 (202)
159 COG2130 Putative NADP-dependen 92.7 0.12 2.7E-06 54.7 4.2 116 386-531 128-250 (340)
160 PRK12490 6-phosphogluconate de 92.5 0.66 1.4E-05 48.3 9.4 108 418-552 2-117 (299)
161 smart00597 ZnF_TTF zinc finger 92.5 0.028 6.1E-07 49.4 -0.6 66 100-167 3-72 (90)
162 TIGR01921 DAP-DH diaminopimela 92.4 0.58 1.3E-05 50.1 8.8 101 416-543 3-104 (324)
163 TIGR01470 cysG_Nterm siroheme 92.3 0.19 4E-06 50.1 4.8 35 412-446 5-39 (205)
164 PF02737 3HCDH_N: 3-hydroxyacy 92.3 0.19 4E-06 48.9 4.6 88 418-512 1-92 (180)
165 PRK12548 shikimate 5-dehydroge 92.2 2.6 5.7E-05 43.9 13.3 140 396-554 110-259 (289)
166 PRK04207 glyceraldehyde-3-phos 92.2 0.84 1.8E-05 48.9 9.8 103 417-531 2-110 (341)
167 PF00070 Pyr_redox: Pyridine n 92.2 0.65 1.4E-05 38.6 7.2 49 418-469 1-49 (80)
168 PRK08618 ornithine cyclodeamin 92.1 2.2 4.7E-05 45.2 12.7 115 415-551 126-243 (325)
169 TIGR00873 gnd 6-phosphoglucona 92.0 0.62 1.4E-05 52.0 9.0 114 419-553 2-122 (467)
170 PLN00203 glutamyl-tRNA reducta 92.0 0.99 2.1E-05 51.2 10.6 121 398-539 246-378 (519)
171 PRK15469 ghrA bifunctional gly 91.9 0.26 5.7E-06 52.1 5.5 35 412-446 132-166 (312)
172 PRK14190 bifunctional 5,10-met 91.9 0.41 8.9E-06 50.3 6.9 52 392-448 138-190 (284)
173 cd08230 glucose_DH Glucose deh 91.9 2.4 5.3E-05 44.4 12.7 33 414-446 171-203 (355)
174 PLN02350 phosphogluconate dehy 91.8 0.89 1.9E-05 51.2 9.9 118 417-552 7-130 (493)
175 PRK05690 molybdopterin biosynt 91.7 0.83 1.8E-05 46.6 8.8 37 413-449 29-65 (245)
176 TIGR02355 moeB molybdopterin s 91.7 0.62 1.3E-05 47.5 7.8 37 413-449 21-57 (240)
177 PRK14027 quinate/shikimate deh 91.5 3 6.5E-05 43.6 12.8 135 395-554 110-252 (283)
178 PF00899 ThiF: ThiF family; I 91.5 0.52 1.1E-05 43.1 6.4 33 416-448 2-34 (135)
179 cd00757 ThiF_MoeB_HesA_family 91.4 0.45 9.8E-06 47.7 6.5 37 413-449 18-54 (228)
180 TIGR00561 pntA NAD(P) transhyd 91.4 1.7 3.7E-05 49.3 11.6 35 413-448 161-195 (511)
181 PRK12480 D-lactate dehydrogena 91.4 0.3 6.6E-06 52.0 5.4 35 412-446 142-176 (330)
182 PRK11790 D-3-phosphoglycerate 91.4 0.28 6E-06 53.8 5.3 36 411-446 146-181 (409)
183 PRK14851 hypothetical protein; 91.3 1.1 2.4E-05 52.4 10.3 125 413-554 40-167 (679)
184 PRK11559 garR tartronate semia 91.2 1 2.2E-05 46.4 8.9 107 417-552 3-119 (296)
185 PF03435 Saccharop_dh: Sacchar 91.1 0.3 6.5E-06 52.3 5.1 118 419-559 1-127 (386)
186 PRK07680 late competence prote 91.1 0.9 1.9E-05 46.5 8.3 114 418-555 2-120 (273)
187 PRK14183 bifunctional 5,10-met 90.9 0.73 1.6E-05 48.4 7.6 53 391-448 136-189 (281)
188 PF01262 AlaDh_PNT_C: Alanine 90.9 0.37 8E-06 46.0 5.0 33 413-445 17-49 (168)
189 PRK08289 glyceraldehyde-3-phos 90.6 4.9 0.00011 45.2 13.9 74 398-476 106-187 (477)
190 PRK15409 bifunctional glyoxyla 90.4 0.35 7.7E-06 51.4 4.9 34 411-444 140-174 (323)
191 PRK07340 ornithine cyclodeamin 90.4 3.6 7.7E-05 43.3 12.2 114 414-553 123-240 (304)
192 cd01492 Aos1_SUMO Ubiquitin ac 90.2 0.79 1.7E-05 45.3 6.8 37 413-449 18-54 (197)
193 PLN02306 hydroxypyruvate reduc 90.2 0.4 8.7E-06 52.3 5.1 35 411-445 160-195 (386)
194 PRK15057 UDP-glucose 6-dehydro 90.0 1.7 3.7E-05 47.4 9.7 125 417-558 1-146 (388)
195 COG1712 Predicted dinucleotide 90.0 0.87 1.9E-05 46.7 6.9 102 417-543 1-104 (255)
196 PRK08644 thiamine biosynthesis 89.9 0.62 1.3E-05 46.6 5.8 37 413-449 25-61 (212)
197 PRK14852 hypothetical protein; 89.8 1.5 3.4E-05 53.0 9.9 131 413-560 329-462 (989)
198 TIGR01202 bchC 2-desacetyl-2-h 89.7 0.82 1.8E-05 47.2 6.8 90 414-531 143-232 (308)
199 COG1004 Ugd Predicted UDP-gluc 89.6 1.5 3.3E-05 48.2 8.8 94 414-534 308-411 (414)
200 PTZ00434 cytosolic glyceraldeh 89.3 0.8 1.7E-05 49.7 6.4 104 417-529 4-134 (361)
201 cd01483 E1_enzyme_family Super 89.3 1.2 2.5E-05 41.1 6.7 32 418-449 1-32 (143)
202 COG1023 Gnd Predicted 6-phosph 88.9 1.5 3.4E-05 45.5 7.8 117 418-562 2-125 (300)
203 PRK10206 putative oxidoreducta 88.9 0.61 1.3E-05 49.6 5.2 109 417-550 2-118 (344)
204 COG1064 AdhP Zn-dependent alco 88.9 2.8 6.1E-05 45.2 10.2 91 415-532 166-261 (339)
205 PRK14982 acyl-ACP reductase; P 88.8 1.1 2.4E-05 48.3 7.1 55 394-448 133-189 (340)
206 PRK13940 glutamyl-tRNA reducta 88.8 0.91 2E-05 50.0 6.6 51 398-448 163-213 (414)
207 COG1648 CysG Siroheme synthase 88.8 0.63 1.4E-05 46.8 4.9 37 412-448 8-44 (210)
208 PRK08762 molybdopterin biosynt 88.7 1.6 3.5E-05 47.1 8.3 37 413-449 132-168 (376)
209 PRK13403 ketol-acid reductoiso 88.3 0.7 1.5E-05 49.6 5.2 36 412-447 12-47 (335)
210 PRK06046 alanine dehydrogenase 88.2 7.7 0.00017 41.2 12.9 112 415-551 128-244 (326)
211 PRK14184 bifunctional 5,10-met 88.2 1.5 3.2E-05 46.3 7.4 52 392-448 137-193 (286)
212 COG0673 MviM Predicted dehydro 88.1 3.6 7.7E-05 42.6 10.2 113 416-552 3-123 (342)
213 COG2084 MmsB 3-hydroxyisobutyr 88.1 1.6 3.5E-05 46.0 7.6 110 417-553 1-119 (286)
214 COG0190 FolD 5,10-methylene-te 88.1 1.1 2.4E-05 47.2 6.2 52 392-448 136-188 (283)
215 PRK12550 shikimate 5-dehydroge 88.0 10 0.00022 39.5 13.4 127 395-554 106-239 (272)
216 PRK13581 D-3-phosphoglycerate 87.9 0.7 1.5E-05 52.3 5.2 35 411-445 135-169 (526)
217 PRK05472 redox-sensing transcr 87.7 1.1 2.4E-05 44.4 5.9 52 396-448 65-118 (213)
218 PRK05600 thiamine biosynthesis 87.7 0.74 1.6E-05 49.9 5.0 37 413-449 38-74 (370)
219 PRK05717 oxidoreductase; Valid 87.0 1.1 2.3E-05 44.5 5.3 35 411-445 5-40 (255)
220 PRK00436 argC N-acetyl-gamma-g 86.9 2.2 4.8E-05 45.6 8.0 101 417-536 3-105 (343)
221 PRK14618 NAD(P)H-dependent gly 86.9 4.6 0.0001 42.4 10.3 125 416-557 4-140 (328)
222 TIGR00465 ilvC ketol-acid redu 86.8 1.1 2.3E-05 47.7 5.4 35 414-448 1-35 (314)
223 PRK12475 thiamine/molybdopteri 86.8 0.88 1.9E-05 48.7 4.9 37 413-449 21-57 (338)
224 TIGR01692 HIBADH 3-hydroxyisob 86.7 1.9 4.1E-05 44.5 7.2 106 421-553 1-114 (288)
225 PRK05597 molybdopterin biosynt 86.7 0.99 2.1E-05 48.6 5.2 37 413-449 25-61 (355)
226 PRK14174 bifunctional 5,10-met 86.7 1.7 3.7E-05 46.0 6.9 52 392-448 139-195 (295)
227 KOG2380 Prephenate dehydrogena 86.6 0.72 1.6E-05 49.9 4.0 33 416-448 52-84 (480)
228 PRK08605 D-lactate dehydrogena 86.6 0.87 1.9E-05 48.4 4.7 35 411-445 141-176 (332)
229 PRK00045 hemA glutamyl-tRNA re 86.4 1.6 3.4E-05 48.0 6.7 102 413-538 179-288 (423)
230 PRK00683 murD UDP-N-acetylmura 86.2 2.4 5.2E-05 46.2 7.9 33 415-448 2-34 (418)
231 PRK11064 wecC UDP-N-acetyl-D-m 86.2 2.4 5.3E-05 46.5 8.0 31 417-448 4-34 (415)
232 PRK10669 putative cation:proto 86.1 3.1 6.6E-05 47.2 9.0 111 417-554 418-537 (558)
233 PLN02688 pyrroline-5-carboxyla 86.0 4.2 9E-05 41.1 9.1 24 417-440 1-24 (266)
234 PRK02472 murD UDP-N-acetylmura 85.8 1.3 2.7E-05 48.3 5.6 35 413-448 2-36 (447)
235 TIGR03215 ac_ald_DH_ac acetald 85.8 2.1 4.5E-05 45.1 7.0 95 417-534 2-101 (285)
236 PF13380 CoA_binding_2: CoA bi 85.7 7.2 0.00016 35.3 9.6 104 417-553 1-109 (116)
237 PTZ00353 glycosomal glyceralde 85.6 5.4 0.00012 43.2 10.0 52 417-476 3-55 (342)
238 PRK05479 ketol-acid reductoiso 85.6 1.3 2.7E-05 47.7 5.3 32 413-444 14-45 (330)
239 COG1063 Tdh Threonine dehydrog 85.5 13 0.00029 39.6 13.0 102 416-535 169-274 (350)
240 PRK14106 murD UDP-N-acetylmura 85.3 1.3 2.8E-05 48.2 5.4 35 413-448 2-36 (450)
241 PRK07531 bifunctional 3-hydrox 85.2 4.1 9E-05 45.7 9.4 31 417-448 5-35 (495)
242 COG0771 MurD UDP-N-acetylmuram 85.1 5.2 0.00011 44.7 10.0 35 413-448 4-38 (448)
243 PF07991 IlvN: Acetohydroxy ac 85.1 1.3 2.8E-05 43.2 4.7 35 414-449 2-36 (165)
244 COG0289 DapB Dihydrodipicolina 85.1 9.1 0.0002 40.1 11.0 119 417-556 3-128 (266)
245 PRK09260 3-hydroxybutyryl-CoA 85.1 4.3 9.4E-05 41.8 8.8 31 417-448 2-32 (288)
246 PRK07878 molybdopterin biosynt 85.1 1.9 4.2E-05 46.9 6.6 36 414-449 40-75 (392)
247 TIGR02371 ala_DH_arch alanine 85.0 15 0.00033 39.0 13.1 108 415-546 127-239 (325)
248 PRK03659 glutathione-regulated 84.9 3.4 7.3E-05 47.6 8.6 113 417-555 401-520 (601)
249 TIGR01832 kduD 2-deoxy-D-gluco 84.7 1.5 3.3E-05 42.9 5.1 34 413-446 2-36 (248)
250 PRK07877 hypothetical protein; 84.7 0.84 1.8E-05 53.7 3.8 129 413-562 104-234 (722)
251 PRK08628 short chain dehydroge 84.7 1.5 3.2E-05 43.3 5.0 36 411-446 2-38 (258)
252 TIGR00518 alaDH alanine dehydr 84.7 2.7 5.8E-05 45.5 7.4 34 414-448 165-198 (370)
253 PRK12826 3-ketoacyl-(acyl-carr 84.6 1.6 3.4E-05 42.5 5.1 35 413-447 3-38 (251)
254 PRK15059 tartronate semialdehy 84.6 3.1 6.8E-05 43.4 7.6 113 418-562 2-124 (292)
255 PRK01438 murD UDP-N-acetylmura 84.4 1.7 3.6E-05 48.0 5.7 39 409-448 9-47 (480)
256 PRK12828 short chain dehydroge 84.1 1.7 3.7E-05 41.8 5.1 34 413-446 4-38 (239)
257 PRK06476 pyrroline-5-carboxyla 84.0 4.6 0.0001 40.9 8.3 31 418-448 2-34 (258)
258 PRK07523 gluconate 5-dehydroge 84.0 1.8 3.9E-05 42.8 5.3 35 413-448 7-42 (255)
259 PLN02712 arogenate dehydrogena 83.9 1.6 3.5E-05 50.9 5.6 36 410-445 363-398 (667)
260 KOG1370 S-adenosylhomocysteine 83.8 2.7 5.9E-05 45.0 6.6 80 413-519 211-291 (434)
261 PRK05562 precorrin-2 dehydroge 83.8 1.6 3.5E-05 44.4 4.9 37 412-448 21-57 (223)
262 PRK06138 short chain dehydroge 83.7 1.8 3.9E-05 42.3 5.1 34 413-446 2-36 (252)
263 PRK05557 fabG 3-ketoacyl-(acyl 83.7 2.2 4.8E-05 41.2 5.7 36 413-448 2-38 (248)
264 PRK08328 hypothetical protein; 83.6 1.5 3.2E-05 44.4 4.5 36 413-448 24-59 (231)
265 COG1052 LdhA Lactate dehydroge 83.6 1.5 3.2E-05 46.9 4.8 109 410-548 140-255 (324)
266 PRK06823 ornithine cyclodeamin 83.6 10 0.00022 40.4 10.9 146 378-551 93-244 (315)
267 PRK07060 short chain dehydroge 83.5 2.1 4.4E-05 41.7 5.4 35 412-446 5-40 (245)
268 cd01487 E1_ThiF_like E1_ThiF_l 83.4 3.5 7.6E-05 39.9 6.9 32 418-449 1-32 (174)
269 COG0569 TrkA K+ transport syst 83.4 1.4 3.1E-05 44.3 4.4 116 417-556 1-124 (225)
270 COG1179 Dinucleotide-utilizing 83.2 1.2 2.7E-05 46.0 3.8 35 414-448 28-62 (263)
271 PRK03562 glutathione-regulated 83.0 4.8 0.0001 46.6 8.9 109 417-551 401-515 (621)
272 TIGR02354 thiF_fam2 thiamine b 83.0 1.7 3.7E-05 43.1 4.6 37 413-449 18-54 (200)
273 PRK06523 short chain dehydroge 82.8 2.1 4.6E-05 42.3 5.3 35 412-446 5-40 (260)
274 PRK07231 fabG 3-ketoacyl-(acyl 82.7 2.3 4.9E-05 41.5 5.3 35 413-448 2-37 (251)
275 PRK06841 short chain dehydroge 82.6 2.2 4.8E-05 41.9 5.3 35 412-446 11-46 (255)
276 PRK04690 murD UDP-N-acetylmura 82.3 1.8 4E-05 48.0 5.0 34 414-448 6-39 (468)
277 PRK05786 fabG 3-ketoacyl-(acyl 82.2 2.5 5.4E-05 41.0 5.4 34 413-446 2-36 (238)
278 PRK06928 pyrroline-5-carboxyla 82.0 5.8 0.00012 41.0 8.2 118 417-559 2-127 (277)
279 cd08237 ribitol-5-phosphate_DH 82.0 11 0.00023 39.7 10.3 90 415-530 163-256 (341)
280 PRK07530 3-hydroxybutyryl-CoA 82.0 2.4 5.2E-05 43.7 5.4 31 417-448 5-35 (292)
281 KOG1257 NADP+-dependent malic 81.9 23 0.00049 40.6 13.1 180 324-535 234-427 (582)
282 PLN02353 probable UDP-glucose 81.9 5.8 0.00013 44.6 8.8 31 417-448 2-34 (473)
283 PLN02240 UDP-glucose 4-epimera 81.8 2.4 5.1E-05 44.0 5.4 35 413-447 2-37 (352)
284 PRK08416 7-alpha-hydroxysteroi 81.8 2.5 5.5E-05 42.1 5.4 37 412-448 4-41 (260)
285 PRK08291 ectoine utilization p 81.8 22 0.00047 37.8 12.7 116 415-554 131-251 (330)
286 PRK04148 hypothetical protein; 81.6 2.9 6.4E-05 39.4 5.4 90 414-528 15-107 (134)
287 PRK06172 short chain dehydroge 81.6 2.7 5.8E-05 41.4 5.4 36 412-448 3-39 (253)
288 TIGR02279 PaaC-3OHAcCoADH 3-hy 81.6 3.2 7E-05 46.8 6.7 31 417-448 6-36 (503)
289 cd01485 E1-1_like Ubiquitin ac 81.6 1.8 4E-05 42.7 4.2 36 414-449 17-52 (198)
290 PRK12938 acetyacetyl-CoA reduc 81.5 2.6 5.7E-05 41.2 5.3 35 414-448 1-36 (246)
291 PRK09496 trkA potassium transp 81.5 11 0.00024 40.9 10.6 35 413-448 228-262 (453)
292 KOG0022 Alcohol dehydrogenase, 81.4 1.8 3.9E-05 46.5 4.3 50 389-445 173-223 (375)
293 PRK07688 thiamine/molybdopteri 81.4 2 4.3E-05 46.1 4.7 37 413-449 21-57 (339)
294 PRK08268 3-hydroxy-acyl-CoA de 81.4 2.4 5.1E-05 47.9 5.6 31 417-448 8-38 (507)
295 PLN02858 fructose-bisphosphate 81.3 5.4 0.00012 50.4 9.1 112 415-552 3-123 (1378)
296 PRK07819 3-hydroxybutyryl-CoA 81.2 2.3 4.9E-05 44.3 5.0 31 417-448 6-36 (286)
297 cd08242 MDR_like Medium chain 81.1 11 0.00024 38.4 9.9 34 414-447 154-187 (319)
298 PRK08703 short chain dehydroge 81.1 2.8 6E-05 41.0 5.3 34 413-446 3-37 (239)
299 PRK06949 short chain dehydroge 80.9 3 6.6E-05 41.0 5.5 35 412-446 5-40 (258)
300 PRK01710 murD UDP-N-acetylmura 80.8 1.8 3.9E-05 47.7 4.3 36 412-448 10-45 (458)
301 PRK08217 fabG 3-ketoacyl-(acyl 80.7 3.1 6.6E-05 40.5 5.5 35 413-448 2-37 (253)
302 PRK06125 short chain dehydroge 80.7 3 6.6E-05 41.3 5.5 35 412-446 3-38 (259)
303 PF01210 NAD_Gly3P_dh_N: NAD-d 80.6 6.8 0.00015 36.9 7.6 30 418-448 1-30 (157)
304 TIGR01850 argC N-acetyl-gamma- 80.6 3.8 8.3E-05 43.9 6.5 101 417-536 1-105 (346)
305 PRK02006 murD UDP-N-acetylmura 80.5 2.5 5.4E-05 47.1 5.3 36 413-449 4-39 (498)
306 PRK08993 2-deoxy-D-gluconate 3 80.5 2.7 5.8E-05 41.7 5.1 33 413-445 7-40 (253)
307 PRK07774 short chain dehydroge 80.5 3.1 6.7E-05 40.7 5.4 33 413-445 3-36 (250)
308 TIGR02992 ectoine_eutC ectoine 80.5 13 0.00029 39.4 10.5 115 415-553 128-248 (326)
309 cd08239 THR_DH_like L-threonin 80.4 46 0.00099 34.4 14.3 32 414-445 162-194 (339)
310 PRK01390 murD UDP-N-acetylmura 80.2 2.6 5.7E-05 46.3 5.3 34 414-448 7-40 (460)
311 PRK13394 3-hydroxybutyrate deh 80.2 3 6.6E-05 41.0 5.3 33 413-445 4-37 (262)
312 PRK08642 fabG 3-ketoacyl-(acyl 80.1 3.3 7.1E-05 40.5 5.5 35 413-447 2-37 (253)
313 PRK08261 fabG 3-ketoacyl-(acyl 80.1 10 0.00022 41.3 9.8 34 412-445 206-240 (450)
314 PRK06550 fabG 3-ketoacyl-(acyl 80.1 3 6.4E-05 40.5 5.1 33 413-445 2-35 (235)
315 TIGR03325 BphB_TodD cis-2,3-di 80.1 3.1 6.8E-05 41.4 5.4 33 413-445 2-35 (262)
316 PRK12429 3-hydroxybutyrate deh 80.1 3.1 6.7E-05 40.7 5.3 32 414-445 2-34 (258)
317 PRK08339 short chain dehydroge 80.0 3.1 6.7E-05 41.8 5.4 36 412-448 4-40 (263)
318 PRK09186 flagellin modificatio 79.9 3 6.4E-05 41.0 5.1 32 414-445 2-34 (256)
319 PRK12742 oxidoreductase; Provi 79.8 3.3 7.2E-05 40.1 5.4 34 413-446 3-37 (237)
320 PLN02586 probable cinnamyl alc 79.7 5.3 0.00011 42.4 7.2 35 414-448 182-216 (360)
321 TIGR03628 arch_S11P archaeal r 79.7 7.4 0.00016 35.9 7.1 63 389-451 38-109 (114)
322 PRK08945 putative oxoacyl-(acy 79.6 2.9 6.3E-05 41.1 4.9 33 413-445 9-42 (247)
323 PRK06398 aldose dehydrogenase; 79.6 3.3 7.2E-05 41.3 5.4 34 413-446 3-37 (258)
324 PRK10637 cysG siroheme synthas 79.6 2.4 5.3E-05 47.0 4.8 36 412-447 8-43 (457)
325 PRK09072 short chain dehydroge 79.5 3.4 7.5E-05 41.0 5.5 34 413-446 2-36 (263)
326 PRK06153 hypothetical protein; 79.5 2 4.4E-05 47.1 4.0 36 413-448 173-208 (393)
327 PRK06124 gluconate 5-dehydroge 79.3 3.4 7.3E-05 40.8 5.3 35 412-446 7-42 (256)
328 PRK12829 short chain dehydroge 79.3 3.2 7E-05 40.8 5.2 34 413-446 8-42 (264)
329 PRK08293 3-hydroxybutyryl-CoA 79.3 3.2 7E-05 42.8 5.3 31 417-448 4-34 (287)
330 PLN02858 fructose-bisphosphate 79.2 6.7 0.00014 49.6 8.9 112 415-553 323-444 (1378)
331 PRK06197 short chain dehydroge 79.1 2.9 6.4E-05 42.8 5.0 36 412-447 12-48 (306)
332 PRK09607 rps11p 30S ribosomal 79.1 8 0.00017 36.6 7.3 65 389-453 45-118 (132)
333 PRK12939 short chain dehydroge 79.1 3.5 7.6E-05 40.1 5.3 33 413-445 4-37 (250)
334 PF03721 UDPG_MGDP_dh_N: UDP-g 79.1 2.6 5.7E-05 41.2 4.4 29 417-445 1-29 (185)
335 PRK07062 short chain dehydroge 79.1 3.5 7.7E-05 40.9 5.4 34 412-445 4-38 (265)
336 PRK07035 short chain dehydroge 78.9 3.5 7.6E-05 40.5 5.3 34 413-446 5-39 (252)
337 PRK08936 glucose-1-dehydrogena 78.8 4.1 8.9E-05 40.4 5.8 36 412-447 3-39 (261)
338 PRK05579 bifunctional phosphop 78.8 4.6 0.0001 44.4 6.6 54 401-457 175-245 (399)
339 PRK07576 short chain dehydroge 78.7 3.6 7.7E-05 41.3 5.3 34 413-446 6-40 (264)
340 PRK04308 murD UDP-N-acetylmura 78.5 3.4 7.4E-05 45.2 5.5 35 413-448 2-36 (445)
341 PRK05653 fabG 3-ketoacyl-(acyl 78.5 3.8 8.2E-05 39.5 5.2 34 413-446 2-36 (246)
342 PRK12937 short chain dehydroge 78.5 4.1 8.8E-05 39.6 5.5 35 413-447 2-37 (245)
343 PLN02896 cinnamyl-alcohol dehy 78.3 3.9 8.4E-05 42.9 5.7 37 411-447 5-42 (353)
344 PRK08264 short chain dehydroge 78.3 3.7 8.1E-05 39.9 5.2 34 413-446 3-38 (238)
345 TIGR02622 CDP_4_6_dhtase CDP-g 78.2 3.3 7.2E-05 43.3 5.1 33 414-446 2-35 (349)
346 PRK09135 pteridine reductase; 78.2 3.9 8.5E-05 39.7 5.3 34 414-447 4-38 (249)
347 KOG1196 Predicted NAD-dependen 78.1 4.9 0.00011 43.0 6.2 57 385-448 130-187 (343)
348 PLN02256 arogenate dehydrogena 78.0 4.9 0.00011 42.5 6.3 34 413-446 33-66 (304)
349 PRK05875 short chain dehydroge 78.0 4.1 8.8E-05 40.7 5.5 34 413-446 4-38 (276)
350 PRK12746 short chain dehydroge 77.9 4.2 9.1E-05 40.0 5.5 33 413-445 3-36 (254)
351 PRK07814 short chain dehydroge 77.9 3.8 8.3E-05 40.9 5.3 34 413-446 7-41 (263)
352 PRK07890 short chain dehydroge 77.8 3.7 7.9E-05 40.4 5.0 34 414-448 3-37 (258)
353 PRK08063 enoyl-(acyl carrier p 77.7 4.1 9E-05 39.8 5.3 35 414-448 2-37 (250)
354 PLN02653 GDP-mannose 4,6-dehyd 77.7 3.4 7.3E-05 43.0 5.0 35 413-447 3-38 (340)
355 PRK12823 benD 1,6-dihydroxycyc 77.6 3.9 8.4E-05 40.4 5.1 36 412-448 4-40 (260)
356 PRK06196 oxidoreductase; Provi 77.6 4.1 8.8E-05 42.1 5.5 36 411-446 21-57 (315)
357 PRK08213 gluconate 5-dehydroge 77.6 4 8.7E-05 40.4 5.3 34 413-446 9-43 (259)
358 PRK06463 fabG 3-ketoacyl-(acyl 77.5 4.7 0.0001 39.9 5.7 36 412-447 3-39 (255)
359 PRK06935 2-deoxy-D-gluconate 3 77.3 4.1 9E-05 40.3 5.3 33 413-445 12-45 (258)
360 PRK06057 short chain dehydroge 77.1 4.1 8.9E-05 40.3 5.2 33 413-445 4-37 (255)
361 PRK07478 short chain dehydroge 77.1 4.4 9.5E-05 40.0 5.3 34 413-446 3-37 (254)
362 PRK08226 short chain dehydroge 76.9 4.2 9.1E-05 40.2 5.2 34 413-446 3-37 (263)
363 PRK05872 short chain dehydroge 76.9 4.3 9.2E-05 41.7 5.4 34 412-445 5-39 (296)
364 PRK06171 sorbitol-6-phosphate 76.8 4.3 9.3E-05 40.4 5.2 33 413-445 6-39 (266)
365 PRK07063 short chain dehydroge 76.7 4.3 9.4E-05 40.2 5.2 33 413-445 4-37 (260)
366 PLN02986 cinnamyl-alcohol dehy 76.7 4.8 0.00011 41.4 5.8 35 414-448 3-38 (322)
367 TIGR03632 bact_S11 30S ribosom 76.7 9.6 0.00021 34.5 6.9 65 389-453 35-100 (108)
368 PRK06077 fabG 3-ketoacyl-(acyl 76.6 4.9 0.00011 39.2 5.5 36 413-448 3-39 (252)
369 PRK05867 short chain dehydroge 76.6 4.3 9.3E-05 40.1 5.1 33 413-445 6-39 (253)
370 PRK07806 short chain dehydroge 76.6 4.6 0.0001 39.5 5.3 35 413-447 3-38 (248)
371 PRK06300 enoyl-(acyl carrier p 76.5 3.6 7.9E-05 43.1 4.8 36 411-447 3-41 (299)
372 PRK12481 2-deoxy-D-gluconate 3 76.5 4.1 8.9E-05 40.5 5.0 33 413-445 5-38 (251)
373 TIGR02130 dapB_plant dihydrodi 76.5 15 0.00032 38.7 9.2 120 418-556 2-127 (275)
374 PRK06500 short chain dehydroge 76.4 4.2 9.2E-05 39.6 5.0 33 413-445 3-36 (249)
375 PRK06194 hypothetical protein; 76.3 4.5 9.7E-05 40.7 5.3 33 413-445 3-36 (287)
376 PRK09242 tropinone reductase; 76.3 4.5 9.8E-05 40.0 5.2 34 413-446 6-40 (257)
377 PLN02206 UDP-glucuronate decar 76.2 4.1 8.8E-05 45.1 5.3 37 411-447 114-151 (442)
378 KOG1502 Flavonol reductase/cin 76.2 5.3 0.00012 43.0 6.0 33 415-447 5-38 (327)
379 PRK07589 ornithine cyclodeamin 76.1 44 0.00095 36.2 12.9 117 415-555 128-249 (346)
380 PRK05876 short chain dehydroge 76.1 4.6 9.9E-05 41.0 5.3 35 413-448 3-38 (275)
381 PRK14620 NAD(P)H-dependent gly 76.0 6.8 0.00015 41.0 6.7 30 418-448 2-31 (326)
382 CHL00073 chlN photochlorophyll 76.0 8.4 0.00018 43.2 7.7 41 409-449 307-347 (457)
383 PF13738 Pyr_redox_3: Pyridine 76.0 3.8 8.1E-05 38.9 4.4 31 413-443 164-194 (203)
384 PRK12825 fabG 3-ketoacyl-(acyl 75.8 5.3 0.00011 38.5 5.4 36 413-448 3-39 (249)
385 PRK12491 pyrroline-5-carboxyla 75.8 11 0.00023 39.1 8.0 118 417-560 3-128 (272)
386 PRK15181 Vi polysaccharide bio 75.8 4.2 9.1E-05 42.8 5.1 36 412-447 11-47 (348)
387 PRK07411 hypothetical protein; 75.8 3.4 7.3E-05 45.1 4.5 36 414-449 36-71 (390)
388 PRK00141 murD UDP-N-acetylmura 75.8 4.2 9E-05 45.2 5.3 35 413-448 12-46 (473)
389 TIGR01296 asd_B aspartate-semi 75.8 4.2 9E-05 43.6 5.1 83 418-527 1-89 (339)
390 PRK00421 murC UDP-N-acetylmura 75.7 4.2 9.1E-05 44.8 5.3 34 414-448 5-39 (461)
391 PRK07856 short chain dehydroge 75.7 5.2 0.00011 39.5 5.5 35 412-446 2-37 (252)
392 TIGR01761 thiaz-red thiazoliny 75.5 11 0.00023 40.8 8.1 109 416-551 3-119 (343)
393 PRK03369 murD UDP-N-acetylmura 75.5 4.3 9.3E-05 45.4 5.3 34 414-448 10-43 (488)
394 PRK07825 short chain dehydroge 75.5 5.2 0.00011 40.0 5.5 33 413-445 2-35 (273)
395 PRK12748 3-ketoacyl-(acyl-carr 75.5 4.3 9.4E-05 40.2 4.9 33 413-445 2-37 (256)
396 KOG0069 Glyoxylate/hydroxypyru 75.4 3.6 7.7E-05 44.4 4.4 33 410-442 156-188 (336)
397 CHL00041 rps11 ribosomal prote 75.4 11 0.00024 34.6 7.0 64 390-453 49-113 (116)
398 PLN02662 cinnamyl-alcohol dehy 75.3 4.2 9.2E-05 41.5 4.8 32 415-446 3-35 (322)
399 PRK05866 short chain dehydroge 75.1 5.4 0.00012 41.1 5.6 35 411-445 35-70 (293)
400 PLN00141 Tic62-NAD(P)-related 75.0 4.9 0.00011 40.0 5.1 36 412-447 13-49 (251)
401 PRK08220 2,3-dihydroxybenzoate 74.9 5.7 0.00012 38.9 5.5 36 412-447 4-40 (252)
402 PLN02253 xanthoxin dehydrogena 74.8 5.3 0.00012 40.1 5.4 34 412-445 14-48 (280)
403 PRK06079 enoyl-(acyl carrier p 74.7 5 0.00011 40.0 5.1 33 413-445 4-39 (252)
404 PRK12359 flavodoxin FldB; Prov 74.7 5.3 0.00012 39.0 5.1 45 412-456 75-129 (172)
405 TIGR03206 benzo_BadH 2-hydroxy 74.6 5.1 0.00011 39.1 5.0 32 414-445 1-33 (250)
406 TIGR00978 asd_EA aspartate-sem 74.5 6 0.00013 42.2 5.9 103 417-532 1-106 (341)
407 PRK08085 gluconate 5-dehydroge 74.4 5.3 0.00011 39.4 5.1 35 413-448 6-41 (254)
408 PRK05854 short chain dehydroge 74.4 5.3 0.00012 41.5 5.4 35 412-446 10-45 (313)
409 PRK05565 fabG 3-ketoacyl-(acyl 74.3 5.6 0.00012 38.5 5.2 36 413-448 2-38 (247)
410 PRK07326 short chain dehydroge 74.3 5.6 0.00012 38.5 5.2 32 414-445 4-36 (237)
411 PRK06198 short chain dehydroge 74.3 5.4 0.00012 39.3 5.2 36 413-448 3-39 (260)
412 PRK09880 L-idonate 5-dehydroge 74.3 9.2 0.0002 40.0 7.1 35 414-448 168-202 (343)
413 PRK07666 fabG 3-ketoacyl-(acyl 74.3 5.9 0.00013 38.6 5.4 33 413-445 4-37 (239)
414 COG0136 Asd Aspartate-semialde 74.3 16 0.00036 39.4 9.0 24 416-439 1-25 (334)
415 PRK14619 NAD(P)H-dependent gly 74.3 4.9 0.00011 42.0 5.1 33 415-448 3-35 (308)
416 PRK07577 short chain dehydroge 74.2 5.5 0.00012 38.5 5.1 33 415-447 2-35 (234)
417 PRK05309 30S ribosomal protein 74.1 12 0.00026 35.0 7.1 65 389-453 52-117 (128)
418 PRK12827 short chain dehydroge 74.1 5.4 0.00012 38.7 5.1 34 413-446 3-37 (249)
419 PRK08265 short chain dehydroge 74.1 5.6 0.00012 39.7 5.3 35 413-448 3-38 (261)
420 PRK07066 3-hydroxybutyryl-CoA 73.9 5.2 0.00011 42.8 5.2 31 417-448 8-38 (321)
421 PRK12744 short chain dehydroge 73.9 5.6 0.00012 39.4 5.2 35 413-447 5-40 (257)
422 PRK06522 2-dehydropantoate 2-r 73.8 4.9 0.00011 41.0 4.9 31 417-448 1-31 (304)
423 COG0686 Ald Alanine dehydrogen 73.7 5.2 0.00011 43.1 5.0 33 415-448 167-199 (371)
424 PRK05225 ketol-acid reductoiso 73.6 2.1 4.5E-05 48.1 2.2 31 413-443 33-63 (487)
425 PRK06114 short chain dehydroge 73.6 6.1 0.00013 39.2 5.3 35 413-448 5-40 (254)
426 TIGR03736 PRTRC_ThiF PRTRC sys 73.4 4.2 9.1E-05 41.9 4.2 25 415-439 10-34 (244)
427 PLN02383 aspartate semialdehyd 73.2 9 0.0002 41.3 6.9 26 415-440 6-32 (344)
428 PLN02695 GDP-D-mannose-3',5'-e 73.2 5.2 0.00011 42.8 5.1 32 415-446 20-52 (370)
429 PF02254 TrkA_N: TrkA-N domain 73.0 6.5 0.00014 34.3 4.8 105 419-549 1-111 (116)
430 PRK07067 sorbitol dehydrogenas 72.9 6 0.00013 39.1 5.1 33 413-445 3-36 (257)
431 TIGR02822 adh_fam_2 zinc-bindi 72.9 42 0.00091 35.1 11.6 33 414-446 164-196 (329)
432 PRK08589 short chain dehydroge 72.8 6.3 0.00014 39.7 5.3 33 413-445 3-36 (272)
433 PRK08278 short chain dehydroge 72.7 6.5 0.00014 39.7 5.4 34 413-446 3-37 (273)
434 PRK09620 hypothetical protein; 72.5 6.5 0.00014 40.0 5.3 35 414-448 1-52 (229)
435 COG0300 DltE Short-chain dehyd 72.5 9.3 0.0002 40.0 6.5 36 413-448 3-39 (265)
436 TIGR03366 HpnZ_proposed putati 72.4 12 0.00026 38.0 7.3 34 414-448 119-153 (280)
437 PF13460 NAD_binding_10: NADH( 72.3 5.9 0.00013 37.0 4.7 30 419-448 1-31 (183)
438 COG0677 WecC UDP-N-acetyl-D-ma 72.3 17 0.00037 40.4 8.6 29 417-445 10-38 (436)
439 PLN02214 cinnamoyl-CoA reducta 72.3 6 0.00013 41.6 5.2 34 414-447 8-42 (342)
440 PRK06505 enoyl-(acyl carrier p 72.3 5.9 0.00013 40.2 5.0 35 413-448 4-41 (271)
441 PLN02730 enoyl-[acyl-carrier-p 72.3 5.7 0.00012 41.8 5.0 34 411-444 4-40 (303)
442 PRK06914 short chain dehydroge 72.2 6.4 0.00014 39.4 5.2 32 415-446 2-34 (280)
443 PLN02514 cinnamyl-alcohol dehy 72.1 12 0.00026 39.6 7.4 42 407-448 172-213 (357)
444 PRK07097 gluconate 5-dehydroge 72.1 6.5 0.00014 39.2 5.2 36 412-448 6-42 (265)
445 PRK08594 enoyl-(acyl carrier p 72.1 5.9 0.00013 39.8 4.9 34 412-445 3-39 (257)
446 PRK07792 fabG 3-ketoacyl-(acyl 72.0 6.2 0.00013 40.8 5.2 37 411-448 7-44 (306)
447 PRK06200 2,3-dihydroxy-2,3-dih 72.0 6.6 0.00014 39.0 5.2 32 414-445 4-36 (263)
448 PRK12859 3-ketoacyl-(acyl-carr 71.9 6 0.00013 39.4 4.9 33 413-445 3-38 (256)
449 PLN02427 UDP-apiose/xylose syn 71.9 6.3 0.00014 42.0 5.3 36 411-446 9-46 (386)
450 PLN02178 cinnamyl-alcohol dehy 71.7 11 0.00024 40.5 7.1 34 415-448 178-211 (375)
451 PLN00198 anthocyanidin reducta 71.6 6.4 0.00014 40.9 5.2 34 413-446 6-40 (338)
452 COG1250 FadB 3-hydroxyacyl-CoA 71.5 4.5 9.7E-05 43.2 4.0 33 416-449 3-35 (307)
453 PRK00066 ldh L-lactate dehydro 71.4 5.2 0.00011 42.4 4.5 34 415-448 5-39 (315)
454 PRK08277 D-mannonate oxidoredu 71.3 7 0.00015 39.2 5.2 36 412-448 6-42 (278)
455 PRK12747 short chain dehydroge 71.2 7.2 0.00016 38.4 5.2 32 414-445 2-34 (252)
456 PRK12935 acetoacetyl-CoA reduc 71.1 8.1 0.00018 37.8 5.5 35 413-447 3-38 (247)
457 COG0604 Qor NADPH:quinone redu 71.1 9 0.00019 40.7 6.2 56 392-448 118-176 (326)
458 PRK08017 oxidoreductase; Provi 71.1 6.5 0.00014 38.6 4.9 30 417-446 3-33 (256)
459 TIGR01752 flav_long flavodoxin 71.0 11 0.00025 35.9 6.3 43 412-454 74-126 (167)
460 TIGR01743 purR_Bsub pur operon 70.9 55 0.0012 34.4 11.8 32 415-446 193-228 (268)
461 PLN02572 UDP-sulfoquinovose sy 70.9 5.9 0.00013 43.7 5.0 35 412-446 43-78 (442)
462 PRK12743 oxidoreductase; Provi 70.9 7.6 0.00017 38.5 5.4 33 416-448 2-35 (256)
463 PLN02775 Probable dihydrodipic 70.8 28 0.00061 36.9 9.6 113 417-555 12-137 (286)
464 PRK06113 7-alpha-hydroxysteroi 70.8 7.2 0.00016 38.6 5.1 33 413-445 8-41 (255)
465 PRK08664 aspartate-semialdehyd 70.7 6.3 0.00014 42.2 5.0 102 417-531 4-108 (349)
466 PF03853 YjeF_N: YjeF-related 70.6 18 0.0004 34.7 7.7 47 394-444 7-57 (169)
467 PRK06182 short chain dehydroge 70.6 7.3 0.00016 39.0 5.2 32 415-446 2-34 (273)
468 PLN02686 cinnamoyl-CoA reducta 70.5 7.3 0.00016 41.6 5.4 38 411-448 48-86 (367)
469 PRK09134 short chain dehydroge 70.5 8.7 0.00019 38.0 5.7 36 413-448 6-42 (258)
470 PF00411 Ribosomal_S11: Riboso 70.4 15 0.00033 33.3 6.7 64 390-453 36-100 (110)
471 PRK05993 short chain dehydroge 70.4 7.2 0.00016 39.4 5.1 32 415-446 3-35 (277)
472 PRK11730 fadB multifunctional 70.3 6.6 0.00014 46.3 5.4 31 417-448 314-344 (715)
473 KOG2741 Dimeric dihydrodiol de 70.2 30 0.00065 37.7 9.8 113 417-551 7-127 (351)
474 cd08231 MDR_TM0436_like Hypoth 70.1 13 0.00028 38.8 7.2 41 407-447 169-210 (361)
475 PRK07533 enoyl-(acyl carrier p 69.9 7.7 0.00017 38.8 5.2 36 412-448 6-44 (258)
476 COG2085 Predicted dinucleotide 69.9 7 0.00015 39.7 4.8 31 417-448 2-32 (211)
477 PRK06701 short chain dehydroge 69.8 7.8 0.00017 39.8 5.3 34 412-445 42-76 (290)
478 PRK08655 prephenate dehydrogen 69.7 20 0.00042 39.9 8.7 31 417-448 1-32 (437)
479 PRK07370 enoyl-(acyl carrier p 69.7 7.1 0.00015 39.2 4.9 32 413-444 3-37 (258)
480 PRK14874 aspartate-semialdehyd 69.6 15 0.00033 39.1 7.6 84 416-527 1-91 (334)
481 KOG0023 Alcohol dehydrogenase, 69.5 8.1 0.00017 41.8 5.4 43 406-449 173-215 (360)
482 PRK03806 murD UDP-N-acetylmura 69.5 7.8 0.00017 42.2 5.5 36 413-449 3-38 (438)
483 PF00106 adh_short: short chai 69.4 8.3 0.00018 35.2 4.9 32 417-448 1-33 (167)
484 COG0100 RpsK Ribosomal protein 69.3 20 0.00043 33.9 7.2 56 393-448 57-113 (129)
485 PLN02657 3,8-divinyl protochlo 69.2 8.3 0.00018 41.7 5.6 37 410-446 54-91 (390)
486 PRK07985 oxidoreductase; Provi 69.2 7.2 0.00016 40.1 4.9 32 413-444 46-78 (294)
487 cd08295 double_bond_reductase_ 69.1 15 0.00033 38.0 7.3 35 414-448 150-185 (338)
488 KOG1429 dTDP-glucose 4-6-dehyd 69.1 7.9 0.00017 41.3 5.1 38 410-448 21-59 (350)
489 TIGR01316 gltA glutamate synth 69.1 7.1 0.00015 43.0 5.1 34 414-448 270-303 (449)
490 PRK12831 putative oxidoreducta 69.0 6.8 0.00015 43.5 5.0 34 414-448 279-312 (464)
491 cd01491 Ube1_repeat1 Ubiquitin 69.0 6.4 0.00014 41.5 4.5 36 414-449 17-52 (286)
492 PRK07424 bifunctional sterol d 68.9 7.9 0.00017 42.7 5.3 35 412-446 174-209 (406)
493 TIGR02437 FadB fatty oxidation 68.9 7.3 0.00016 45.9 5.4 31 417-448 314-344 (714)
494 PRK07831 short chain dehydroge 68.8 8 0.00017 38.4 5.0 35 413-448 14-50 (262)
495 PLN03154 putative allyl alcoho 68.7 14 0.00031 38.9 7.2 34 414-447 157-191 (348)
496 PRK09496 trkA potassium transp 68.6 6.6 0.00014 42.6 4.7 29 417-445 1-29 (453)
497 PRK12771 putative glutamate sy 68.6 6.7 0.00015 44.5 4.9 34 414-448 135-168 (564)
498 PRK09291 short chain dehydroge 68.5 8.3 0.00018 37.9 5.0 32 416-447 2-34 (257)
499 PRK12936 3-ketoacyl-(acyl-carr 68.5 8.9 0.00019 37.2 5.2 35 413-448 3-38 (245)
500 smart00859 Semialdhyde_dh Semi 68.5 20 0.00043 32.0 7.0 31 418-448 1-33 (122)
No 1
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-122 Score=986.65 Aligned_cols=383 Identities=50% Similarity=0.936 Sum_probs=372.4
Q ss_pred hhhHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhCccchHHHHhhcCCCeEEEEEEeEECCCCceEEEEEEEEEec
Q 008128 190 SKTAGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFS 269 (577)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~ef~qav~~~~~~~~~~~~~~p~y~~~le~l~~Per~i~~rvp~~dd~G~~~v~~GyRVqhs 269 (577)
...++.+++.+.+|+|+|+||+|||+|+++++.|+|+++|+|.+++++|++|+|+|+|||||+||+|++++|+|||||||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~ef~qa~~e~~~~~~~~~~~~~~y~~i~e~l~~Per~i~~~vp~~~D~G~v~v~~GyRVqhn 90 (454)
T PTZ00079 11 AQEMDALRKRVKSRDPNQPEFLQAFHEVMTSLKPLFQKNPKYLGVLERLVEPERVIQFRVPWVDDKGEQRVNRGFRVQYN 90 (454)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhChhHHHHHHHhccCceEEEEEEEEEECCCCEEEEeeEEEEEc
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCeeeecCCCHHHHHHHhHHhHHhhhccCCCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHhhhcCCCcccC
Q 008128 270 QALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLP 349 (577)
Q Consensus 270 ~alGPakGGlRfhp~vt~~evk~LA~~MT~KnAL~gLP~GGaKGGI~~DP~~~s~~Eler~~r~f~~eL~~~IGp~~DVp 349 (577)
+++|||||||||||+||++++++||++|||||||++||||||||||+|||+++|+.|++||||+||++|.+||||++|||
T Consensus 91 ~alGP~kGGlRfhp~v~~~~vk~La~~mt~KnAl~gLP~GGgKGGi~~dPk~~s~~El~r~~r~f~~eL~~~IGp~~Dvp 170 (454)
T PTZ00079 91 SALGPYKGGLRFHPSVNLSILKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSDNEVMRFCQSFMTELYRHIGPDTDVP 170 (454)
T ss_pred CCCCCCCCCEEeeCCCCHHHHHHHHHHHHHHHHhcCCCCCCcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCChhHHHHHHHHhhhhhCCccccccCccccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHH
Q 008128 350 SEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAM 429 (577)
Q Consensus 350 apDvGt~~~em~~i~~~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~ 429 (577)
||||||+++||+||+++|+++.+.+.|++||||+.+|||.+|++||||||+|++++++++++.+++|+||+||||||||+
T Consensus 171 A~DvGt~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~ 250 (454)
T PTZ00079 171 AGDIGVGGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQ 250 (454)
T ss_pred hhhcCCCHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHH
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhc-CcccccccccCCceEeCCCCccccccceeecCCcc
Q 008128 430 HVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ-RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ 508 (577)
Q Consensus 430 ~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~-g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~~ 508 (577)
++|++|.+.|+|||+|||++|+||||+|||+++|..|.++|+.+ +++.+|.+.++++++++++++|+++||||+|||++
T Consensus 251 ~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA~~ 330 (454)
T PTZ00079 251 YAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCATQ 330 (454)
T ss_pred HHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCcCcccCCccEEEecccc
Confidence 99999999999999999999999999999999999999999865 78888876677899999999999999999999999
Q ss_pred cccchhhHhhhhccCceEEEecCCCCCCHHHHHHHHhCCcEEecchhccccceeehhhhhcccc
Q 008128 509 NEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVRYSIFYSTCFL 572 (577)
Q Consensus 509 n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI~viPD~~aNAGGVivS~~Ev~~~~ 572 (577)
|+||.+||++|++++||+|+||||||+|++|+++|+++||+|+||+++|||||++||||+.-++
T Consensus 331 n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L~~~GI~~~PD~~aNAGGV~vS~~E~~Qn~ 394 (454)
T PTZ00079 331 NEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLFKKNGVIFCPGKAANAGGVAISGLEMSQNA 394 (454)
T ss_pred ccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCcEEEChhhhcCCCeeeehHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999997654
No 2
>PRK14030 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-117 Score=949.85 Aligned_cols=382 Identities=43% Similarity=0.812 Sum_probs=369.3
Q ss_pred HHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhCccchH--HHHhhcCCCeEEEEEEeEECCCCceEEEEEEEEEecC
Q 008128 193 AGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVN--IMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQ 270 (577)
Q Consensus 193 ~~~~~~~~~~~~~~~~ef~qav~~~~~~~~~~~~~~p~y~~--~le~l~~Per~i~~rvp~~dd~G~~~v~~GyRVqhs~ 270 (577)
++++++.+.+++|+|+||+|++++++++++++++.+|+|.. ++++|++|+|+|+|+|||+||+|++++|+|||||||+
T Consensus 3 ~~~~~~~~~~~~~~e~eF~~~~~~~~~~~~~~l~~~~~y~~~~~~~~l~~p~r~i~~~vp~~~d~G~~~~~~GyRvqhn~ 82 (445)
T PRK14030 3 IEKIMTSLEAKHPGESEYLQAVKEVLLSVEDVYNQHPEFEKAKIIERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQFNN 82 (445)
T ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHHHHHHccChhhhhhHHHHHhhcCcEEEEEEEEEEECCCcEEEEeeEEEEecC
Confidence 45788889999999999999999999999999999999985 9999999999999999999999999999999999999
Q ss_pred CCCCCCCCeeeecCCCHHHHHHHhHHhHHhhhccCCCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHhhhcCCCcccCC
Q 008128 271 ALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPS 350 (577)
Q Consensus 271 alGPakGGlRfhp~vt~~evk~LA~~MT~KnAL~gLP~GGaKGGI~~DP~~~s~~Eler~~r~f~~eL~~~IGp~~DVpa 350 (577)
++|||||||||||++|++|+++||++|||||||++||||||||||++||+.+|+.|+|||||+|+++|.+||||++||||
T Consensus 83 ~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~DIpA 162 (445)
T PRK14030 83 AIGPYKGGIRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWRHIGPDTDVPA 162 (445)
T ss_pred cccCCCCcEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeecCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCChhHHHHHHHHhhhhhCCccccccCccccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHH
Q 008128 351 EEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMH 430 (577)
Q Consensus 351 pDvGt~~~em~~i~~~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~ 430 (577)
|||||+++||+||+|+|+++.++.++++||||+.+|||.+|++||||||+++++++++++|.+++|+||+||||||||++
T Consensus 163 pDvgt~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~ 242 (445)
T PRK14030 163 GDIGVGGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWG 242 (445)
T ss_pred cccCCCHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcc-cccccccCCceEeCCCCccccccceeecCCccc
Q 008128 431 VLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL-RDYSKTYARSKYYDEAKPWNERCDVAFPCASQN 509 (577)
Q Consensus 431 aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l-~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~~n 509 (577)
+|++|.+.|+|||+|||++|+||||+|||++++..|+++|+.++++ ..|.+.||++++++++++|+++||||+|||++|
T Consensus 243 aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~~~~~~~~cDVliPcAl~n 322 (445)
T PRK14030 243 AATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAGKKPWEQKVDIALPCATQN 322 (445)
T ss_pred HHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCCccceeccccEEeeccccc
Confidence 9999999999999999999999999999999988889999988876 445556788999999999999999999999999
Q ss_pred ccchhhHhhhhccCceEEEecCCCCCCHHHHHHHHhCCcEEecchhccccceeehhhhhccccCc
Q 008128 510 EIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVRYSIFYSTCFLDA 574 (577)
Q Consensus 510 ~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI~viPD~~aNAGGVivS~~Ev~~~~~~ 574 (577)
+||.+||++|++++||+|+||||+|+||+|+++|++|||+|+||+++|||||++||||+.-++.-
T Consensus 323 ~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL~~rGI~~vPD~~aNAGGVivs~~E~~qn~~~ 387 (445)
T PRK14030 323 ELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKFIAAKQLFAPGKAVNAGGVATSGLEMSQNAMH 387 (445)
T ss_pred cCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHCCCEEeCcceecCCCeeeehhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999876543
No 3
>PRK14031 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=2.4e-114 Score=927.38 Aligned_cols=380 Identities=45% Similarity=0.823 Sum_probs=364.8
Q ss_pred HHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhCccch--HHHHhhcCCCeEEEEEEeEECCCCceEEEEEEEEEecC
Q 008128 193 AGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYV--NIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQ 270 (577)
Q Consensus 193 ~~~~~~~~~~~~~~~~ef~qav~~~~~~~~~~~~~~p~y~--~~le~l~~Per~i~~rvp~~dd~G~~~v~~GyRVqhs~ 270 (577)
++++++.+++|+|+|+||+|||+|+++++.|+|+++|+|. +++++|++|+|+++|+|||+||+|++++|+|||||||+
T Consensus 3 ~~~~~~~~~~~~~~~~e~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~gyRvqhn~ 82 (444)
T PRK14031 3 AAKVLEDLKRRFPNEPEYHQAVEEVLSTIEEEYNKHPEFDKANLIERLCIPDRVYQFRVTWVDDKGNVQTNMGYRVQHNN 82 (444)
T ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHHHHHHHhChhhhhhhHHHHhhcCceEEEEEEEEEECCCCEEEEeeEEEEecC
Confidence 4578999999999999999999999999999999999996 59999999999999999999999999999999999999
Q ss_pred CCCCCCCCeeeecCCCHHHHHHHhHHhHHhhhccCCCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHhhhcCCCcccCC
Q 008128 271 ALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPS 350 (577)
Q Consensus 271 alGPakGGlRfhp~vt~~evk~LA~~MT~KnAL~gLP~GGaKGGI~~DP~~~s~~Eler~~r~f~~eL~~~IGp~~DVpa 350 (577)
++|||||||||||++|++|+++||++|||||||++||||||||||++||+++|+.|+||+||+|+++|.++|||++||||
T Consensus 83 ~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~dipA 162 (444)
T PRK14031 83 AIGPYKGGIRFHASVNLGILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWRHIGPETDVPA 162 (444)
T ss_pred CCcCCCCCeeecCCCCHHHHHHHHHHHHHHHHHcCCCCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHHhccCCCCccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCChhHHHHHHHHhhhhhCCccccccCccccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHH
Q 008128 351 EEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMH 430 (577)
Q Consensus 351 pDvGt~~~em~~i~~~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~ 430 (577)
|||||+++||+||+|+|+++.++..|++||||+.+|||.+|.+||||||+++++++++++|.+|+|+||+||||||||++
T Consensus 163 pDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~ 242 (444)
T PRK14031 163 GDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQY 242 (444)
T ss_pred cccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhh-cCcccccccccCCceEeCCCCccccccceeecCCccc
Q 008128 431 VLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ-QRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQN 509 (577)
Q Consensus 431 aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~-~g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~~n 509 (577)
+|++|.+.|+|||+|||++|+||||+|||+++|.++.++|+. ++++.+|...+ ++++++++++|+.+||||+|||++|
T Consensus 243 aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~-ga~~i~~d~~~~~~cDIliPaAl~n 321 (444)
T PRK14031 243 TAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKY-GCKYVEGARPWGEKGDIALPSATQN 321 (444)
T ss_pred HHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhc-CCEEcCCcccccCCCcEEeeccccc
Confidence 999999999999999999999999999999998777777776 56788775444 6888999999999999999999999
Q ss_pred ccchhhHhhhhccCceEEEecCCCCCCHHHHHHHHhCCcEEecchhccccceeehhhhhccccC
Q 008128 510 EIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVRYSIFYSTCFLD 573 (577)
Q Consensus 510 ~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI~viPD~~aNAGGVivS~~Ev~~~~~ 573 (577)
+||.+||++|...+|++|+||||+|+|++|+++|+++||+++||+++|||||++||||+.-++-
T Consensus 322 ~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~~L~~rgI~~~PD~~aNAGGVivs~~E~~qn~~ 385 (444)
T PRK14031 322 ELNGDDARQLVANGVIAVSEGANMPSTPEAIKVFQDAKILYAPGKAANAGGVSVSGLEMTQNSI 385 (444)
T ss_pred ccCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHHHHCCcEEeChhhccCCCeeeehhhhhcccc
Confidence 9999999999766778999999999999999999999999999999999999999999986643
No 4
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-111 Score=889.91 Aligned_cols=350 Identities=40% Similarity=0.662 Sum_probs=334.2
Q ss_pred CccHHHHHHHHHHHHHHHHHhCccchHHHHhhcCCCeEEEEEEeEECCCCceEEEEEEEEEecCCCCCCCCCeeeecCCC
Q 008128 207 EIEFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMN 286 (577)
Q Consensus 207 ~~ef~qav~~~~~~~~~~~~~~p~y~~~le~l~~Per~i~~rvp~~dd~G~~~v~~GyRVqhs~alGPakGGlRfhp~vt 286 (577)
+++|.|++.++..++.+.. ..+ .++|+|++|+|+++|++||+||+|++++|+|||||||+++||||||+||||+||
T Consensus 1 ~~~~~~a~~~~~~~~~~~~-~~~---~~~e~l~~p~r~i~~~i~v~~d~g~~~~~~g~rvqhn~a~GP~kGGiRfhP~v~ 76 (411)
T COG0334 1 ENEFEQAVKELEKALEPLY-LDE---GVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSALGPYKGGVRFHPYVT 76 (411)
T ss_pred CcHHHHHHHHHHHhhhhcc-Cch---hHHHHhcCceeEEEEEEEEEEcCCcEeeeEEEEEEecCCcCCccCceecCCCCC
Confidence 4689999999999988732 221 499999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHhHHhhhccCCCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHhhhcCCCcccCCCCCcCChhHHHHHHHH
Q 008128 287 LSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQ 366 (577)
Q Consensus 287 ~~evk~LA~~MT~KnAL~gLP~GGaKGGI~~DP~~~s~~Eler~~r~f~~eL~~~IGp~~DVpapDvGt~~~em~~i~~~ 366 (577)
++|+++||+||||||||++||||||||||++||+.+|+.|+|||||+|+++|.++|||++|||||||||++++|+||+|+
T Consensus 77 ~~ev~~Ls~~MT~Knal~~Lp~GGGKGgi~~DPk~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~de 156 (411)
T COG0334 77 LEEVKALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDE 156 (411)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCceeeeCCcccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCc-cccccCccccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEE
Q 008128 367 YRRLAGHF-QGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 367 y~~~~g~~-~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaI 445 (577)
|+++.|.. .|++||||+++|||.+|++||||||+++++++++.++.+|+|+||+||||||||+++|++|++.|||||++
T Consensus 157 y~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~ 236 (411)
T COG0334 157 YSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAV 236 (411)
T ss_pred hhhhcCCCCcceecCCcccccCCCCCCcccceehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEE
Confidence 99999765 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCccccccceeecCCcccccchhhHhhhhccCce
Q 008128 446 SDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCR 525 (577)
Q Consensus 446 SDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~~n~It~enA~~l~~~~ak 525 (577)
||++|+||||+|||+++| .+.|+..+++.+| +++++++++++|+.+||||+|||++|+||.+||++| +||
T Consensus 237 sds~g~i~~~~Gld~~~l---~~~~~~~~~v~~~----~ga~~i~~~e~~~~~cDIl~PcA~~n~I~~~na~~l---~ak 306 (411)
T COG0334 237 SDSKGGIYDEDGLDVEAL---LELKERRGSVAEY----AGAEYITNEELLEVDCDILIPCALENVITEDNADQL---KAK 306 (411)
T ss_pred EcCCCceecCCCCCHHHH---HHHhhhhhhHHhh----cCceEccccccccccCcEEcccccccccchhhHHHh---hhc
Confidence 999999999999999997 3666666777765 679999999999999999999999999999999999 999
Q ss_pred EEEecCCCCCCHHHHHHHHhCCcEEecchhccccceeehhhhhcc
Q 008128 526 ILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVRYSIFYSTC 570 (577)
Q Consensus 526 iVvEgAN~p~T~eA~~iL~~rGI~viPD~~aNAGGVivS~~Ev~~ 570 (577)
+|+||||||+|+||+++|.+|||+|+||+++|||||++||||+..
T Consensus 307 ~V~EgAN~P~t~eA~~i~~erGIl~~PD~laNAGGV~vS~~E~~q 351 (411)
T COG0334 307 IVVEGANGPTTPEADEILLERGILVVPDILANAGGVIVSYLEWVQ 351 (411)
T ss_pred EEEeccCCCCCHHHHHHHHHCCCEEcChhhccCcCeeeehHHHHh
Confidence 999999999999999999999999999999999999999999974
No 5
>PRK09414 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=5.6e-110 Score=895.10 Aligned_cols=378 Identities=52% Similarity=0.932 Sum_probs=363.7
Q ss_pred hHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhCccchH--HHHhhcCCCeEEEEEEeEECCCCceEEEEEEEEEec
Q 008128 192 TAGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVN--IMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFS 269 (577)
Q Consensus 192 ~~~~~~~~~~~~~~~~~ef~qav~~~~~~~~~~~~~~p~y~~--~le~l~~Per~i~~rvp~~dd~G~~~v~~GyRVqhs 269 (577)
.++.+++++.+|+|+|+||+|++++++++++++++.+|+|.. ++++|++|+|+|+|++||+||+|++++|+|||||||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~l~~p~r~i~v~~pv~~d~g~~~~~~gyRv~h~ 85 (445)
T PRK09414 6 YLESVLEQVKKRNPGQPEFHQAVREVLESLWPVLEKNPEYAEAGILERLVEPERVIIFRVPWVDDKGQVQVNRGFRVQFN 85 (445)
T ss_pred HHHHHHHHHHhhCcCCchHHHHHHHHHHHHHHHhccChhhhhhhHHHHhcCCceEEEEEEEEEECCCcEEEEeeeEEEec
Confidence 578899999999999999999999999999999999999985 999999999999999999999999999999999999
Q ss_pred CCCCCCCCCeeeecCCCHHHHHHHhHHhHHhhhccCCCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHhhhcCCCcccC
Q 008128 270 QALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLP 349 (577)
Q Consensus 270 ~alGPakGGlRfhp~vt~~evk~LA~~MT~KnAL~gLP~GGaKGGI~~DP~~~s~~Eler~~r~f~~eL~~~IGp~~DVp 349 (577)
+++||+||||||||+++++|+++||++|||||||++||||||||||++||+.+|+.|+|||||+|+++|.++|||++|||
T Consensus 86 ~~~GPakGG~R~~p~v~~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~~~~~l~~~iG~~~Dip 165 (445)
T PRK09414 86 SAIGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYRHIGPDTDVP 165 (445)
T ss_pred CCCcCCCCceeecCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeeecCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCChhHHHHHHHHhhhhhCCccccccCccccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHH
Q 008128 350 SEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAM 429 (577)
Q Consensus 350 apDvGt~~~em~~i~~~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~ 429 (577)
||||||+++||+||+|+|+++.++..|++||||+.+|||.+|.++|||||++++++++++++.+++|+||+||||||||+
T Consensus 166 apDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~ 245 (445)
T PRK09414 166 AGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAI 245 (445)
T ss_pred ccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHH
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhc-CcccccccccCCceEeCCCCccccccceeecCCcc
Q 008128 430 HVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ-RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ 508 (577)
Q Consensus 430 ~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~-g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~~ 508 (577)
++|++|.+.|+|||+|||++|+||||+|||+++| .++|+.+ +++.+|...+ ++++++++++|+.+||||||||++
T Consensus 246 ~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L---~~~k~~~~~~l~~~~~~~-~~~~i~~~~i~~~d~DVliPaAl~ 321 (445)
T PRK09414 246 YAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKL---KEIKEVRRGRISEYAEEF-GAEYLEGGSPWSVPCDIALPCATQ 321 (445)
T ss_pred HHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHH---HHHHHhcCCchhhhhhhc-CCeecCCccccccCCcEEEecCCc
Confidence 9999999999999999999999999999999886 7777766 5788774332 578889999999999999999999
Q ss_pred cccchhhHhhhhccCceEEEecCCCCCCHHHHHHHHhCCcEEecchhccccceeehhhhhccccC
Q 008128 509 NEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVRYSIFYSTCFLD 573 (577)
Q Consensus 509 n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI~viPD~~aNAGGVivS~~Ev~~~~~ 573 (577)
|+||++||.++++++||+|+||||+|+||+|+++|++|||+|+||+++||||||+||||+..++.
T Consensus 322 n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L~~rGI~~vPD~laNaGGVivs~~E~~qn~~ 386 (445)
T PRK09414 322 NELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVFLEAGVLFAPGKAANAGGVATSGLEMSQNAS 386 (445)
T ss_pred CcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeehhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999987543
No 6
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-108 Score=873.34 Aligned_cols=397 Identities=44% Similarity=0.710 Sum_probs=371.6
Q ss_pred hhhhhHHHHHHHHhhhhhcccccCCchhHHHHHhhhHHHHHHHHhhcCCCCccHHHHHHHHHHH--HHHHHHhCccchHH
Q 008128 157 HNNSLLHKEALRLQMASKDKIIADKPIYVKALMSKTAGSIVEAALKRDPHEIEFIQSVQESLHA--LERVIAKNSHYVNI 234 (577)
Q Consensus 157 h~~~~~h~~a~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ef~qav~~~~~~--~~~~~~~~p~y~~~ 234 (577)
|...++|++|++++.+.+++ .+.|.|+++++.- .++.+++|.|+..|.+.+ ....|+++|.|..+
T Consensus 1 ~~~~~~~~~~~~~~~~~k~~--~~~p~~~~~v~~~-----------~~~~~~~~~~~~~e~v~~~e~~~~fek~~~~~~I 67 (514)
T KOG2250|consen 1 HTLFLLFAAAHQYHNSTKDM--ADSPTFLKMVESM-----------YAPAAIEFQQALAEDVLSLELSSKFEKSPLYTAI 67 (514)
T ss_pred CchHHHHHHHHHhhhccccc--ccChHHHHHHHhh-----------ccccchhhhhhhHHHHhcchhhhhhhhhhHhhhh
Confidence 56789999999999998887 8889999887442 248899999999999999 67899999999999
Q ss_pred HHhhcCCCeEEEEEEeEECCCCceEEEEEEEEEecCCCCCCCCCeeeecCCCHHHHHHHhHHhHHhhhccCCCCCCceEE
Q 008128 235 MERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGG 314 (577)
Q Consensus 235 le~l~~Per~i~~rvp~~dd~G~~~v~~GyRVqhs~alGPakGGlRfhp~vt~~evk~LA~~MT~KnAL~gLP~GGaKGG 314 (577)
+.+|..|+|+++|++||.+|+|+.+|++||||||+.++||+||||||||+||+|++++||+.||||||++++|+||||||
T Consensus 68 l~~l~p~~~~i~~~~p~~~d~G~~~V~~gfRvqh~~argP~KGGIR~hpsvn~d~~k~La~~~t~K~A~tdiP~GGaKGG 147 (514)
T KOG2250|consen 68 LFRLDPPERVIKFRVPIPRDDGEFEVINGFRVQHNRARGPAKGGIRYHPSVNLDIVKALAFLMTYKNALTDIPYGGAKGG 147 (514)
T ss_pred hhhcCccceeEEEEeceecCCceEEEeechhhhhhhccCcccCceEeCCcCCHHHHHHHHHHHHHHhhccCCCCCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhhhcCCCcccCCCCCcCChhHHHHHHHHhhhhhCCccccccCccccccCCCCCCCc
Q 008128 315 SDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEA 394 (577)
Q Consensus 315 I~~DP~~~s~~Eler~~r~f~~eL~~~IGp~~DVpapDvGt~~~em~~i~~~y~~~~g~~~g~vTGKp~~~GGs~~r~eA 394 (577)
|.+||+++|+.|++|+||+||+||.+||||++||||||||||++||+||+++|+++.|++.+|+||||+.||||++|++|
T Consensus 148 i~~dPk~~s~nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~A 227 (514)
T KOG2250|consen 148 ILIDPKGKSDNEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEA 227 (514)
T ss_pred cccCccccchHHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHcC--CCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhh
Q 008128 395 TGYGLVFFAQLILADMN--KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ 472 (577)
Q Consensus 395 TG~GV~~~~~~~l~~~g--~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~ 472 (577)
|||||+|+++.++++++ .+++|+||+||||||||+|++++|++.|+|||+|+|++|+|+||+|||+++| .++++.
T Consensus 228 TG~GV~~y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~Gid~~eL---~~~~~~ 304 (514)
T KOG2250|consen 228 TGRGVVYYVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGVLINPDGIDIEEL---LDLADE 304 (514)
T ss_pred cchhHHHHHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCceeEECCCCCCHHHH---HHHHHh
Confidence 99999999999999998 8999999999999999999999999999999999999999999999999997 555666
Q ss_pred cCcccccccccCCceE-----eCCC--CccccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHHHHHh
Q 008128 473 QRSLRDYSKTYARSKY-----YDEA--KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKK 545 (577)
Q Consensus 473 ~g~l~~y~~~~p~a~~-----i~~~--eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~ 545 (577)
++++++| ++++. +... .+|..+||||+|||+||+||.+||.+|++.+||+|+||||||+||||+++|++
T Consensus 305 k~~i~~f----~~~~~~~~~~~~~~~~~~~v~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vlek 380 (514)
T KOG2250|consen 305 KKTIKSF----DGAKLSYEGYIAGLPPWTLVEKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVLEK 380 (514)
T ss_pred hcccccc----ccccccCccccccCcchhhHhhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhHHHHHHh
Confidence 6666665 33322 2222 34577999999999999999999999999999999999999999999999999
Q ss_pred CCcEEecchhccccceeehhhhhccccC
Q 008128 546 ANVLIAPAMAAGAGGVRYSIFYSTCFLD 573 (577)
Q Consensus 546 rGI~viPD~~aNAGGVivS~~Ev~~~~~ 573 (577)
+||+++||++||+|||+|||||++.++-
T Consensus 381 ~gv~i~Pd~~aNaGGVtvS~~E~l~nl~ 408 (514)
T KOG2250|consen 381 AGVLIIPDIYANAGGVTVSYFEWLQNLN 408 (514)
T ss_pred CCeEEechhhccCCCeeeeHHHHHHhcc
Confidence 9999999999999999999999997764
No 7
>PLN02477 glutamate dehydrogenase
Probab=100.00 E-value=7.4e-107 Score=864.47 Aligned_cols=352 Identities=29% Similarity=0.494 Sum_probs=340.6
Q ss_pred cHHHHHHHHHHHHHHHHHhCccchHHHHhhcCCCeEEEEEEeEECCCCceEEEEEEEEEecCCCCCCCCCeeeecCCCHH
Q 008128 209 EFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLS 288 (577)
Q Consensus 209 ef~qav~~~~~~~~~~~~~~p~y~~~le~l~~Per~i~~rvp~~dd~G~~~v~~GyRVqhs~alGPakGGlRfhp~vt~~ 288 (577)
.+++.+++.++.++++++..|. +++.|++|+|+++|+|||+||+|++++|+|||||||+++||+||||||||++|++
T Consensus 2 ~~~~~~~~~~~~a~~~~~~~~~---~~~~l~~p~r~~~v~~p~~~d~g~~~~~~gyRvqh~~~~GP~kGGiR~~p~v~~~ 78 (410)
T PLN02477 2 NALAATNRNFREAARLLGLDSK---LEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPD 78 (410)
T ss_pred CHHHHHHHHHHHHHHHcCCCHH---HHHHHhcCceEEEEEEEEEECCCcEEEeeeeEeeecCccCCCCCCeeecCCCCHH
Confidence 4688899999999999999987 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHhHHhhhccCCCCCCceEEEecCCCCCCHHHHHHHHHHHHHHHhhhcCCCcccCCCCCcCChhHHHHHHHHhh
Q 008128 289 IAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYR 368 (577)
Q Consensus 289 evk~LA~~MT~KnAL~gLP~GGaKGGI~~DP~~~s~~Eler~~r~f~~eL~~~IGp~~DVpapDvGt~~~em~~i~~~y~ 368 (577)
|+++||++|||||||++||||||||||++||+++|+.|+||+||+|+++|.++|||++|||||||||+++||+||+++|+
T Consensus 79 ev~~La~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~ 158 (410)
T PLN02477 79 EVNALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYS 158 (410)
T ss_pred HHHHHHHHHHHHHHhcCCCCcCceeeeccCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCccccccCccccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 369 RLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 369 ~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++.|++++++||||+.+|||.+|+++|||||++++++++++++.+++|+||+||||||||+++|++|.+.|+|||+|||+
T Consensus 159 ~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 159 KFHGFSPAVVTGKPIDLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred HhhCCCCceEeCCCcccCCCCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCccccccceeecCCcccccchhhHhhhhccCceEEE
Q 008128 449 KGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILV 528 (577)
Q Consensus 449 ~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVv 528 (577)
+|+||||+|||+++| +++|++++++.+| |+++.++++++|..+||||+|||++|+||++||++| +||+|+
T Consensus 239 ~G~iy~~~GLD~~~L---~~~k~~~g~l~~~----~~a~~i~~~e~l~~~~DvliP~Al~~~I~~~na~~i---~ak~I~ 308 (410)
T PLN02477 239 TGAVKNENGLDIPAL---RKHVAEGGGLKGF----PGGDPIDPDDILVEPCDVLIPAALGGVINKENAADV---KAKFIV 308 (410)
T ss_pred CCeEECCCCCCHHHH---HHHHHhcCchhcc----ccceEecCccceeccccEEeeccccccCCHhHHHHc---CCcEEE
Confidence 999999999999875 7788888888765 788899999999999999999999999999999999 999999
Q ss_pred ecCCCCCCHHHHHHHHhCCcEEecchhccccceeehhhhhccccC
Q 008128 529 EGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVRYSIFYSTCFLD 573 (577)
Q Consensus 529 EgAN~p~T~eA~~iL~~rGI~viPD~~aNAGGVivS~~Ev~~~~~ 573 (577)
||||+|+||+|+++|++|||+|+||+++||||||+||||+.-++.
T Consensus 309 egAN~p~t~ea~~~L~~rGI~~~PD~~aNaGGVivs~~E~~qn~~ 353 (410)
T PLN02477 309 EAANHPTDPEADEILRKKGVVVLPDIYANSGGVTVSYFEWVQNIQ 353 (410)
T ss_pred eCCCCCCCHHHHHHHHHCCcEEEChHHhCCCCeeeeHHHhhhccc
Confidence 999999999999999999999999999999999999999985443
No 8
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=100.00 E-value=1.5e-69 Score=617.56 Aligned_cols=444 Identities=15% Similarity=0.145 Sum_probs=340.7
Q ss_pred HhhcccceeEEeeccCc----hhhhhhHHh-hhccccCCCC--------cccCCC-------------ccccchhhhhhh
Q 008128 105 EWADTYKWAYVDVKEGT----ARIFCSVCR-EYGRKHRRNP--------YGNEGS-------------RNMQMSALEEHN 158 (577)
Q Consensus 105 ~w~~~~~~~~~~~~~g~----~~~~~~~c~-~~~~~~~rn~--------~~~~~~-------------~~~~~~al~~h~ 158 (577)
+|..+++..-+...... +...-++|+ .|.|+.|.|+ .....+ ++--.|--.+..
T Consensus 304 ~~~p~~~~~~l~~~~~ls~~e~~y~~~~~~F~~~F~~r~~~~~y~~l~~l~~~~~~~~~~l~~lk~~l~~~~fs~~~I~~ 383 (1002)
T PTZ00324 304 YILPFSSLTRLHEERVLSCEETAYADAAVIFAFHFTPSPTTDDYRHLEALLAKEPNGVSRLNNLRTRLTQEVFSERYIGE 383 (1002)
T ss_pred EecCCchHHHHHHcCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHhCCCchhHHHHHHHHHhhccCCCCHHHHHH
Confidence 36666665444222221 444444555 8989998886 221100 011111122455
Q ss_pred hhhHHHHHHHHhhhhh-cccccCCchhHHHHHhhhHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-----------HHH
Q 008128 159 NSLLHKEALRLQMASK-DKIIADKPIYVKALMSKTAGSIVEAALKRDPHEIEFIQSVQESLHALER-----------VIA 226 (577)
Q Consensus 159 ~~~~h~~a~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ef~qav~~~~~~~~~-----------~~~ 226 (577)
....|.+..+...+.| .|++++.--...... ...+.+.+.+. +..+..-++++..++..+.. .|+
T Consensus 384 ~l~~~p~~~~~L~~~F~~rf~p~~~~~~~~~~-~~~~~~~~~v~--~~~~~~Ilr~~~~~~~~~lrTNff~~~k~alsFr 460 (1002)
T PTZ00324 384 AIALYPEFVKLLYEDFRLGHTPERRAAITQKI-EETARLKEDIR--NELDRTIFSAFLSFNEHILKTNFYKTEKTALAFR 460 (1002)
T ss_pred HHHHCHHHHHHHHHHHHHhhCCccchhhhhhh-HHHHHHHhhcC--ChhHHHHHHHHHHHHHHHhccccccCCCceEEEe
Confidence 5667777777777777 667665211110000 00111111111 22233344444444433321 122
Q ss_pred hCccchHHHHhhcCCCeEEEEEEeEECCCCceEEEEEEEEEecCCCCCCCCCeeeecC-----------CCHHHHHHHhH
Q 008128 227 KNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPS-----------MNLSIAKFLGF 295 (577)
Q Consensus 227 ~~p~y~~~le~l~~Per~i~~rvp~~dd~G~~~v~~GyRVqhs~alGPakGGlRfhp~-----------vt~~evk~LA~ 295 (577)
.+| .+++.|..|++.+.+.+|+ | +.|+|||+||+.+ +||||||||+ ++++|+++||.
T Consensus 461 ldp---~~l~~l~~P~~p~~v~fv~----G--~~f~G~hvR~~di---ARGGiR~~~s~~~edy~tn~~~~~dEv~~LA~ 528 (1002)
T PTZ00324 461 LDP---SFLSELEYPRVPYGVFLVA----G--AQFRGFHIRFTDI---ARGGVRMIQSFKEQAYRRNKRSVFDENYNLAS 528 (1002)
T ss_pred CCH---HHHhhcCCCCceEEEEEEE----C--CcEEEEEEecCCc---ccceeEEecCcchhhhhhcccCcHHHHHHHHH
Confidence 333 3788999999999998887 5 6799999999999 9999999998 88999999999
Q ss_pred HhHHhhhccCCCCCCceEEEecCCCCCCH---HHHHHHHHHHHHHHhhhcCCCccc-----------CCCCCcCChhHHH
Q 008128 296 EQTLKNALSPYKLGGAAGGSDFDPKGKSD---NEIMRFCQSFMNEIHRYLGPDKDL-----------PSEEMGVGTREMG 361 (577)
Q Consensus 296 ~MT~KnAL~gLP~GGaKGGI~~DP~~~s~---~Eler~~r~f~~eL~~~IGp~~DV-----------papDvGt~~~em~ 361 (577)
+||+||| +||+|||||||.+||+..++ .|++|++++|+++|.++|||+.|| ||||+||+++.|+
T Consensus 529 tqt~KNa--dIP~GGaKGgi~vdp~~~~~~~~~e~er~~r~yi~aLlDli~p~~dIVd~~~~de~l~~aPD~ntta~~md 606 (1002)
T PTZ00324 529 TQLLKNK--DIPEGGSKGTILLSSRYLNKFAQVRCQHAFLQYIDALLDVMLPGEKVVDHLKQEEIIFLGPDEHTTGTLMD 606 (1002)
T ss_pred HHHHhcC--CCCCCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHhcCCCcccccccCCccccccCCCCCCCHHHHH
Confidence 9999997 99999999999999999887 899999999999999999999999 9999999999999
Q ss_pred HHHHHhhhhhCCc--cccccCccccccCCCCCC-CcchHHHHHHHHHHHHHcCCCCCCceEEEEe--cchHHHHHHHHHH
Q 008128 362 YLFGQYRRLAGHF--QGSFTGPRIFWSGSSLRT-EATGYGLVFFAQLILADMNKELKGLRCVVSG--SGKIAMHVLEKLI 436 (577)
Q Consensus 362 ~i~~~y~~~~g~~--~g~vTGKp~~~GGs~~r~-eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG--fGNVG~~aA~~L~ 436 (577)
|+ ++|++.+|++ .+++||||..+||+.++. ++||+||+++++++++++|.++++.||++|| |||||+++++++.
T Consensus 607 wa-~~~s~~rG~~~~~af~TGKp~~lGG~~hk~yG~T~rGv~~~v~~~~~~lgid~~~~Tv~~~Ggp~GDVGgN~~lls~ 685 (1002)
T PTZ00324 607 WA-ALHAKKRGYPFWKSFTTGKSPSMGGIPHDTYGMTTRSVRAYVTGILEKLGLNEEEVTKFQTGGPDGDLGSNELLLSK 685 (1002)
T ss_pred HH-HHHHHHcCCCCCCCEEeCCCcccCCcCCCcCcccchhHHHHHHHHHHHcCCCccCCEEEEECCCCchHHHHHHHHhC
Confidence 99 9999999986 699999999999999986 9999999999999999999999999999999 9999999998864
Q ss_pred HCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCccccccc------cc-----------CCceEe-----CCCCc
Q 008128 437 AYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TY-----------ARSKYY-----DEAKP 494 (577)
Q Consensus 437 e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~------~~-----------p~a~~i-----~~~ei 494 (577)
+|+|||+|++|++|||+|||+++| .+++..++++.+|.. ++ |+.+.+ ..+++
T Consensus 686 ---~klVAv~D~~G~~~DP~GLd~~EL---~rl~~~~~s~~~yd~~~lS~gG~~~~r~~k~i~l~~~~~i~~g~~~~~~~ 759 (1002)
T PTZ00324 686 ---EKTVGIVDGSGVLHDPEGLNREEL---RRLAHHRLPAREFDESKLSPQGFLVLTDDRDVKLPDGTIVESGLRFRNEF 759 (1002)
T ss_pred ---CEEEEEEcCCCEEECCCCCCHHHH---HHHHHcCCCcccCchhhccCCCceeecccccccCCccceeccccccchhh
Confidence 799999999999999999999997 455556777776521 11 333323 12333
Q ss_pred ---cccccceeecCCc-ccccchhhHhhhhc-----cCceEEEecCCCCCCHHHHHHHHhCCcEEecchhccccceeehh
Q 008128 495 ---WNERCDVAFPCAS-QNEIDQSDAINLVN-----SGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVRYSI 565 (577)
Q Consensus 495 ---l~~~cDIlIPcA~-~n~It~enA~~l~~-----~~akiVvEgAN~p~T~eA~~iL~~rGI~viPD~~aNAGGVivS~ 565 (577)
+..+||||+||+. +++||++||..+++ .+||+|+||||+|+||+|+.+|+++||+++||+++|+|||+|||
T Consensus 760 ~l~~~~~vDlliPaggr~~~I~~~Na~~~~~~~~~~irakvIvEGANlpiT~eAr~~L~~~Gv~IipD~laNsGGV~~S~ 839 (1002)
T PTZ00324 760 HLLPYSDADVFVPCGGRPRSVTLFNVGRFFDEKNGKLRFKIIVEGANLFITQDARLALEECGVILFKDASANKGGVTSSS 839 (1002)
T ss_pred ccccCCCccEEEECCCCcCccCHHHHhhhhhccccCceeEEEEECCCCCCCHHHHHHHHHCCCEEcCcchhcCCCcEeeH
Confidence 4789999999999 99999999943321 29999999999999999999999999999999999999999999
Q ss_pred hhhcccc
Q 008128 566 FYSTCFL 572 (577)
Q Consensus 566 ~Ev~~~~ 572 (577)
|||+.++
T Consensus 840 ~Evl~~l 846 (1002)
T PTZ00324 840 LEVLAAL 846 (1002)
T ss_pred HHHHhcc
Confidence 9999776
No 9
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=100.00 E-value=1.4e-56 Score=452.19 Aligned_cols=195 Identities=48% Similarity=0.847 Sum_probs=186.6
Q ss_pred cCccccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCC
Q 008128 379 TGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGF 458 (577)
Q Consensus 379 TGKp~~~GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GL 458 (577)
||||+.+|||.||.++|||||++++++++++++.+++|+||+||||||||+++|++|.+.|+|||+|||++|+||||+||
T Consensus 1 TGKp~~~GGs~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gl 80 (254)
T cd05313 1 TGKGLSWGGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGF 80 (254)
T ss_pred CCCCCcCCCCCCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHhHhHHHHHHhhcCc-ccccccccCCceEeCCCCccccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCH
Q 008128 459 DYMKISFLRDIKSQQRS-LRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTP 537 (577)
Q Consensus 459 D~e~L~~l~~~k~~~g~-l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~ 537 (577)
|+++|..|.++++.+++ +.+|...+|++++++++++|+.+||||+|||++|+||.+||++|++++||+|+||||+|+||
T Consensus 81 d~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~ 160 (254)
T cd05313 81 TGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA 160 (254)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchhcCCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCH
Confidence 99999888888887766 67776677789999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHhCCcEEecchhccccceeehhhhhccccC
Q 008128 538 EAVDVLKKANVLIAPAMAAGAGGVRYSIFYSTCFLD 573 (577)
Q Consensus 538 eA~~iL~~rGI~viPD~~aNAGGVivS~~Ev~~~~~ 573 (577)
+|+++|++|||+|+||+++|||||++||||+.-++.
T Consensus 161 ~a~~~L~~rGI~vvPD~laNaGGVivs~~E~~qn~~ 196 (254)
T cd05313 161 EAIEVFRQAGVLFAPGKAANAGGVAVSGLEMSQNSQ 196 (254)
T ss_pred HHHHHHHHCCcEEECchhhcCCCeeeeHHHhhcccc
Confidence 999999999999999999999999999999986654
No 10
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=100.00 E-value=5.7e-49 Score=395.29 Aligned_cols=184 Identities=36% Similarity=0.590 Sum_probs=165.6
Q ss_pred cCCCCCCCcchHHHHHHHHHHHHHcCCC-CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHh
Q 008128 386 SGSSLRTEATGYGLVFFAQLILADMNKE-LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKIS 464 (577)
Q Consensus 386 GGs~~r~eATG~GV~~~~~~~l~~~g~~-l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~ 464 (577)
|||.+|.++|||||++++++++++++.+ ++|+||+||||||||+++|++|.+.|++||+|||++|+||||+|||+++|
T Consensus 1 GGs~~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l- 79 (244)
T PF00208_consen 1 GGSGGRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEEL- 79 (244)
T ss_dssp TCHTTTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHH-
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHH-
Confidence 7999999999999999999999998765 99999999999999999999999999999999999999999999999886
Q ss_pred HHHHHHhhcCc-ccccccccC-CceEeCCC-CccccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHH
Q 008128 465 FLRDIKSQQRS-LRDYSKTYA-RSKYYDEA-KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVD 541 (577)
Q Consensus 465 ~l~~~k~~~g~-l~~y~~~~p-~a~~i~~~-eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~ 541 (577)
++++++++. +..|....+ ++++++++ ++|+++||||+|||++|+||.+||++.++++||+||||||+|+||+|++
T Consensus 80 --~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~ 157 (244)
T PF00208_consen 80 --LRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE 157 (244)
T ss_dssp --HHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH
T ss_pred --HHHHHHhCCcccccccccccceeEeccccccccccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH
Confidence 667777777 887743333 57888874 8999999999999999999999999555666999999999999999999
Q ss_pred HHHhCCcEEecchhccccceeehhhhhcccc
Q 008128 542 VLKKANVLIAPAMAAGAGGVRYSIFYSTCFL 572 (577)
Q Consensus 542 iL~~rGI~viPD~~aNAGGVivS~~Ev~~~~ 572 (577)
+|++|||+|+||+++|+|||++||+|+..++
T Consensus 158 ~L~~rGI~viPD~~aNaGGvi~s~~E~~~~~ 188 (244)
T PF00208_consen 158 ILRERGILVIPDFLANAGGVIVSYFEWLQNL 188 (244)
T ss_dssp HHHHTT-EEE-HHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHCCCEEEcchhhcCCCeEeehhhhcchh
Confidence 9999999999999999999999999998764
No 11
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=100.00 E-value=1.2e-47 Score=381.96 Aligned_cols=176 Identities=31% Similarity=0.470 Sum_probs=167.6
Q ss_pred cCCCCCCCcchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhH
Q 008128 386 SGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISF 465 (577)
Q Consensus 386 GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~ 465 (577)
|||.+|+++|||||++++++++++++.+++|+||+||||||||+++|++|.+.|++||+|+|++|++|||+|||+++|
T Consensus 1 gG~~~~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l-- 78 (227)
T cd01076 1 GGSLGREEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPAL-- 78 (227)
T ss_pred CCCCCCCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHH--
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred HHHHHhhcCcccccccccCCceEeCCCCccccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHHHHHh
Q 008128 466 LRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKK 545 (577)
Q Consensus 466 l~~~k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~ 545 (577)
.++++.++++..| +.+++++++++|..+||||+|||++|+||++||++| +|++|+||||+|+||+|+++|++
T Consensus 79 -~~~~~~~g~l~~~----~~~~~~~~~~i~~~~~Dvlip~a~~~~i~~~~~~~l---~a~~I~egAN~~~t~~a~~~L~~ 150 (227)
T cd01076 79 -LAYKKEHGSVLGF----PGAERITNEELLELDCDILIPAALENQITADNADRI---KAKIIVEAANGPTTPEADEILHE 150 (227)
T ss_pred -HHHHHhcCCcccC----CCceecCCccceeecccEEEecCccCccCHHHHhhc---eeeEEEeCCCCCCCHHHHHHHHH
Confidence 6777778888776 667788889999999999999999999999999999 99999999999999999999999
Q ss_pred CCcEEecchhccccceeehhhhhccc
Q 008128 546 ANVLIAPAMAAGAGGVRYSIFYSTCF 571 (577)
Q Consensus 546 rGI~viPD~~aNAGGVivS~~Ev~~~ 571 (577)
|||+|+||+++|||||++||+|+..+
T Consensus 151 rGi~~~PD~~aNaGGvi~s~~E~~~~ 176 (227)
T cd01076 151 RGVLVVPDILANAGGVTVSYFEWVQN 176 (227)
T ss_pred CCCEEEChHHhcCcchhhhHHHHhhh
Confidence 99999999999999999999999743
No 12
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=100.00 E-value=2.8e-45 Score=362.81 Aligned_cols=169 Identities=30% Similarity=0.466 Sum_probs=157.5
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhc
Q 008128 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ 473 (577)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~ 473 (577)
||||||++++++++++++.+++|+||+||||||||+++|++|.++|+++|+|||++|++||| |||++++ .+++...
T Consensus 1 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~-Gld~~~l---~~~~~~~ 76 (217)
T cd05211 1 ATGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP-GITTEEL---INYAVAL 76 (217)
T ss_pred CchhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC-CCCHHHH---HHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999999999999 9999886 5566666
Q ss_pred CcccccccccCCceEeCCCCccccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHHHHHhCCcEEecc
Q 008128 474 RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPA 553 (577)
Q Consensus 474 g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI~viPD 553 (577)
+++..| |.++.++++++|..+||||+|||++|+||++||.++ +||+|+||||+|+|++|+++|+++||+|+||
T Consensus 77 ~~~~~~----~~~~~~~~~~l~~~~~DVlipaA~~~~i~~~~a~~l---~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~Pd 149 (217)
T cd05211 77 GGSARV----KVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKL---KAKVVAEGANNPTTDEALRILHERGIVVAPD 149 (217)
T ss_pred CCcccc----CcccccCcccceeccccEEeeccccCccChhhHhhc---CccEEEeCCCCCCCHHHHHHHHHCCcEEECh
Confidence 666654 556778888999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hhccccceeehhhhhccccC
Q 008128 554 MAAGAGGVRYSIFYSTCFLD 573 (577)
Q Consensus 554 ~~aNAGGVivS~~Ev~~~~~ 573 (577)
+++|+|||++||||+..++-
T Consensus 150 ~~~NaGGvi~s~~E~~q~~~ 169 (217)
T cd05211 150 IVANAGGVIVSYFEWVQNLQ 169 (217)
T ss_pred HHhcCCCeEeEHHHhcCCcc
Confidence 99999999999999987653
No 13
>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the dimerisation region of these enzymes.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2BMA_C 1C1D_B 1BXG_A 1BW9_B 1C1X_A 2YFQ_B 3R3J_D 1V9L_C 1B26_C 2TMG_B ....
Probab=100.00 E-value=6.1e-45 Score=335.12 Aligned_cols=131 Identities=41% Similarity=0.716 Sum_probs=125.0
Q ss_pred CCeEEEEEEeEECCCCceEEEEEEEEEecCCCCCCCCCeeeecCCCHHHHHHHhHHhHHhhhccCCCCCCceEEEecCCC
Q 008128 241 PERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPK 320 (577)
Q Consensus 241 Per~i~~rvp~~dd~G~~~v~~GyRVqhs~alGPakGGlRfhp~vt~~evk~LA~~MT~KnAL~gLP~GGaKGGI~~DP~ 320 (577)
|||+++|++||++|+|....++|||||||+++||+||||||||++|.+|+++||++|||||||++||||||||||.+||+
T Consensus 1 pe~v~~~~~~~~~d~g~~~~~~g~~v~h~~~~GPa~GGiR~~~~~s~~ev~~LA~~MT~K~Al~~lp~GGaKggI~~dp~ 80 (131)
T PF02812_consen 1 PERVIQVRVPVVMDDGPITGLRGYRVQHSTARGPAKGGIRMHPYVSEEEVLRLARGMTYKCALAGLPFGGAKGGIKIDPK 80 (131)
T ss_dssp -SEEEEEEEEEEETTSCEEEEEEEEEEEE-SSSSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTTSS-EEEEEEEESSGG
T ss_pred CCEEEEEEEEEEeCCCCEEEEEEEEEEEcCCCCCCCCCeEEecCCCHHHHHHHHHHHHhhhhhccCCCCceeEEeecCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhcCCCcccCCCCCcCChhHHHHHHHHhhhhh
Q 008128 321 GKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLA 371 (577)
Q Consensus 321 ~~s~~Eler~~r~f~~eL~~~IGp~~DVpapDvGt~~~em~~i~~~y~~~~ 371 (577)
++|..|+++++|+|+++|.++|||+.|||||||||+++||+||+++|++++
T Consensus 81 ~~s~~e~e~l~r~f~~~l~~~i~~~~~i~a~Dvgt~~~dm~~i~~~~~~~t 131 (131)
T PF02812_consen 81 DLSDNERERLTRRFGRALSPFIGPGRDIPAPDVGTGERDMAWIADEYRRVT 131 (131)
T ss_dssp GS-HHHHHHHHHHHHHHHGGGSBTTTEEEEBBTTBSHHHHHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHHHHHHHHHhccCcEEECCcCCCCHHHHHHHHHhchhcC
Confidence 999999999999999999999999999999999999999999999999863
No 14
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=100.00 E-value=5.8e-33 Score=271.28 Aligned_cols=153 Identities=20% Similarity=0.283 Sum_probs=135.5
Q ss_pred CCcchHHHHHHHHHHHHHc--CCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHH
Q 008128 392 TEATGYGLVFFAQLILADM--NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDI 469 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~--g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~ 469 (577)
+.+|||||+++++++++++ +.+++|++|+|||||+||+++|+.|.+.|++|+ ++|.+ .+++ .++
T Consensus 2 s~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D~~----------~~~~---~~~ 67 (200)
T cd01075 2 SPPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VADIN----------EEAV---ARA 67 (200)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCC----------HHHH---HHH
Confidence 4699999999999999997 789999999999999999999999999999987 78863 2333 223
Q ss_pred HhhcCcccccccccCCceEeCCCCccccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCC-HHHHHHHHhCCc
Q 008128 470 KSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCT-PEAVDVLKKANV 548 (577)
Q Consensus 470 k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T-~eA~~iL~~rGI 548 (577)
++. + +++.++.++++..+|||++|||++++||.+++++| +|++|+||||+|+| ++++++|+++||
T Consensus 68 ~~~----------~-g~~~v~~~~l~~~~~Dv~vp~A~~~~I~~~~~~~l---~~~~v~~~AN~~~~~~~~~~~L~~~Gi 133 (200)
T cd01075 68 AEL----------F-GATVVAPEEIYSVDADVFAPCALGGVINDDTIPQL---KAKAIAGAANNQLADPRHGQMLHERGI 133 (200)
T ss_pred HHH----------c-CCEEEcchhhccccCCEEEecccccccCHHHHHHc---CCCEEEECCcCccCCHhHHHHHHHCCC
Confidence 221 1 35566777888889999999999999999999999 99999999999999 999999999999
Q ss_pred EEecchhccccceeehhhhhcccc
Q 008128 549 LIAPAMAAGAGGVRYSIFYSTCFL 572 (577)
Q Consensus 549 ~viPD~~aNAGGVivS~~Ev~~~~ 572 (577)
+|+||+++|||||++||||+.++.
T Consensus 134 ~~~Pd~~~NaGGv~~~~~e~~~~~ 157 (200)
T cd01075 134 LYAPDYVVNAGGLINVADELYGGN 157 (200)
T ss_pred EEeCceeeeCcCceeehhHHhCCc
Confidence 999999999999999999998753
No 15
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=99.94 E-value=1.1e-26 Score=268.66 Aligned_cols=383 Identities=18% Similarity=0.168 Sum_probs=267.6
Q ss_pred hhhhhhHHHHHHHHhhhhh-cccccCCchhHHHHHhhhHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHH---------
Q 008128 156 EHNNSLLHKEALRLQMASK-DKIIADKPIYVKALMSKTAGSIVEAALKRDPHEIE--FIQSVQESLHALER--------- 223 (577)
Q Consensus 156 ~h~~~~~h~~a~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e--f~qav~~~~~~~~~--------- 223 (577)
.++.+.-|+.-.|-..+.| .++++..---.+. .....+.+.+ .+...++..+ -++.+..+++++..
T Consensus 673 I~~~ln~hp~~ar~L~~Lf~~rf~P~~~~~~~~-~~al~~~i~~-al~~v~~ld~DrILR~~~~~i~atLRTNyfq~~~~ 750 (1592)
T COG2902 673 IEATLNKHPDIARSLVDLFDARFDPSIKDSNKA-AEALLDKIEE-ALDAVPSLDEDRILRRFVNLVKATLRTNYFQLDGH 750 (1592)
T ss_pred HHHHhhcChHHHHHHHHHHHHhcCCCCCchhhh-HHHHHHHHHH-HHhcCCCccHHHHHHHHHHHHHHHHhhceeeecCC
Confidence 7778888888888888888 6776542110110 1111222222 2222444444 44444444433322
Q ss_pred -------HHHhCccchHHHHhhcC--CCeEEEEEEeEECCCCceEEEEEEEEEecCCCCCCCCCeeeecCCCH---HHHH
Q 008128 224 -------VIAKNSHYVNIMERLLE--PERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNL---SIAK 291 (577)
Q Consensus 224 -------~~~~~p~y~~~le~l~~--Per~i~~rvp~~dd~G~~~v~~GyRVqhs~alGPakGGlRfhp~vt~---~evk 291 (577)
.|+.+|+ .++.|.. |-++|.|.-| -++|++..|-.. ++||||++ +-+. .|+.
T Consensus 751 ~~~k~~lSFK~dps---~i~~lp~P~Py~eIFVyg~---------~vEGvHLRFg~V---ARGGLRws-DR~~D~rtEvl 814 (1592)
T COG2902 751 GTPKVALSFKFDPS---LIDELPYPRPYREIFVYGP---------EVEGVHLRFGPV---ARGGLRWS-DRNQDFRTEVL 814 (1592)
T ss_pred CCcceeEEEEeChh---hcCCCCCCCcceEEEEEcC---------cceEEEeecccc---cccccccc-ccchhHHHHHH
Confidence 1223333 4555544 5577777665 369999998876 99999998 5554 6999
Q ss_pred HHhHHhHHhhhccCCCCCCceEEEecC--CCCCCHHHHH----HHHHHHHHHHhhh---cCCC----------------c
Q 008128 292 FLGFEQTLKNALSPYKLGGAAGGSDFD--PKGKSDNEIM----RFCQSFMNEIHRY---LGPD----------------K 346 (577)
Q Consensus 292 ~LA~~MT~KnAL~gLP~GGaKGGI~~D--P~~~s~~Ele----r~~r~f~~eL~~~---IGp~----------------~ 346 (577)
.|+..|..|| +.||-+|||||+... |.+-++.|++ +.++.|++-|..+ |.-+ .
T Consensus 815 gLvKAQqvKN--avIvpvGAKGgf~~k~lp~g~~RD~i~~eg~~~Yk~Fi~~LlditDnii~~~vvpP~~vvr~d~dDpy 892 (1592)
T COG2902 815 GLVKAQQVKN--AVIVPVGAKGGFLLKRLPTGGDRDAIFAEGIACYKAFISGLLDITDNIIDDQVVPPADVVRLDGDDPY 892 (1592)
T ss_pred HHHHHHHhcC--CcccccCCcceEecccCCCCCchHHHHHhhHHHHHHHHHHHHHHHHHhhcCCcCCChhhhhcCCCCCe
Confidence 9999999999 667999999999987 6677777765 4677888888642 2111 1
Q ss_pred ccCCCCCcCChhHHHHHHHHhhhhhCC---ccccccCccccccCCCCC----CCcchHHHHHHHHHHHHHcCCCCCCceE
Q 008128 347 DLPSEEMGVGTREMGYLFGQYRRLAGH---FQGSFTGPRIFWSGSSLR----TEATGYGLVFFAQLILADMNKELKGLRC 419 (577)
Q Consensus 347 DVpapDvGt~~~em~~i~~~y~~~~g~---~~g~vTGKp~~~GGs~~r----~eATG~GV~~~~~~~l~~~g~~l~GkrV 419 (577)
=|-|+|-||- +|+.+++. ..+++-|+.+..|||.|. .+.|++|++.+++..++++|.++....|
T Consensus 893 LvVaaDKGTA---------tFsD~AN~vA~~~~fwl~DAFaSGgS~GydHK~mGITarGaweaVkrhFrelg~d~Q~~~f 963 (1592)
T COG2902 893 LVVAADKGTA---------TFSDIANSVAREYGFWLGDAFASGGSAGYDHKKMGITARGAWEAVKRHFRELGLDTQTSPF 963 (1592)
T ss_pred EEEecCCCcc---------cHHHHHHHHHHHhCCChhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHhcccCCCCce
Confidence 1457777773 23322221 136788888888888765 4899999999999999999999999999
Q ss_pred EEEec----chHHHHHHHHHHHCCCeEEEEEcCCCeeeCC-CCCCHHhHhHHHHHHhhcCcccccccc--cCCceE----
Q 008128 420 VVSGS----GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDE-DGFDYMKISFLRDIKSQQRSLRDYSKT--YARSKY---- 488 (577)
Q Consensus 420 aIQGf----GNVG~~aA~~L~e~GAkVVaISDs~G~Iydp-~GLD~e~L~~l~~~k~~~g~l~~y~~~--~p~a~~---- 488 (577)
.+.|. |+|+++ ..|...--+.||+.|..+..+|| -+++...+.+-.-++-.+.++.+|... .+++-.
T Consensus 964 TvvgiGdmsGDVfgN--gMLLS~~irLiAAfDhrhIFiDP~pd~a~S~~eR~RlF~lpRSsw~DYD~s~iS~gG~v~srs 1041 (1592)
T COG2902 964 TVVGIGDMSGDVFGN--GMLLSKHIRLIAAFDHRHIFIDPNPDLAVSFAERKRLFALPRSSWSDYDASKISKGGGVVSRS 1041 (1592)
T ss_pred EEEeeCCCCcccccc--ceeccccceeeEEecCCceeeCCCCCccccHHHHHHHhcCCcCchhhcchhhcCCCCeEEEee
Confidence 99985 666666 45666667899999999999999 577776654433344566778887431 011111
Q ss_pred --------------------eCCCC------------ccccccceeecCCcc-cccchhhHhhhhc-----cCceEEEec
Q 008128 489 --------------------YDEAK------------PWNERCDVAFPCASQ-NEIDQSDAINLVN-----SGCRILVEG 530 (577)
Q Consensus 489 --------------------i~~~e------------il~~~cDIlIPcA~~-n~It~enA~~l~~-----~~akiVvEg 530 (577)
.++.+ +|.--.|.+|||..+ |.+.+++|...+. .+||+|+||
T Consensus 1042 ~K~I~Lspe~~~~lgi~~~~~~P~elitAILKapvDLLw~GGIgTYVka~~etnA~vgDrANd~irv~g~e~raKvIgEG 1121 (1592)
T COG2902 1042 AKAITLSPEVIAALGIDKTELAPNELITAILKAPVDLLWNGGIGTYVKASGETNADVGDRANDAIRVNGEEVRAKVIGEG 1121 (1592)
T ss_pred ccccCCCHHHHHHhCCCccccChHHHHHHHHcCchhhhccCCCceeEecCCCccchhhcccchhhccccceeceeEEeec
Confidence 11111 133346778999995 8888888877664 479999999
Q ss_pred CCCCCCHHHHHHHHhCCcEEecchhccccceeehhhhhc
Q 008128 531 SNMPCTPEAVDVLKKANVLIAPAMAAGAGGVRYSIFYST 569 (577)
Q Consensus 531 AN~p~T~eA~~iL~~rGI~viPD~~aNAGGVivS~~Ev~ 569 (577)
||..+|+.++-.|.++|..+..|.+.|+|||.||..|++
T Consensus 1122 aNLgvTQ~gRief~~~Ggr~ntDaidNsaGVd~SD~EVn 1160 (1592)
T COG2902 1122 ANLGVTQRGRIEFALAGGRINTDAIDNSAGVDCSDHEVN 1160 (1592)
T ss_pred ccccccchhHHHHHHcCCeecchhhcccCCCcccchhhh
Confidence 999999999999999999999999999999999999998
No 16
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=99.91 E-value=8.8e-24 Score=252.74 Aligned_cols=403 Identities=17% Similarity=0.185 Sum_probs=273.5
Q ss_pred hhhhhhHHh-hhccccCCCCcccCCCccccchhhhhhhhhhHHHHHHHHhhhhh-cccccCC----chhHHHHHhhhHHH
Q 008128 122 ARIFCSVCR-EYGRKHRRNPYGNEGSRNMQMSALEEHNNSLLHKEALRLQMASK-DKIIADK----PIYVKALMSKTAGS 195 (577)
Q Consensus 122 ~~~~~~~c~-~~~~~~~rn~~~~~~~~~~~~~al~~h~~~~~h~~a~~~~~~~~-~~~~~~~----p~~~~~~~~~~~~~ 195 (577)
+.|+-+.|+ .+|. . +.++-+. .......|.+.+++..+.| .|+++.. +-.... +.+.+..
T Consensus 588 v~lLRA~~~Yl~Q~---~--~~~s~~~--------i~~~l~~~p~i~~~L~~lF~~rf~P~~~~~~~~~~~~-~~~~i~~ 653 (1528)
T PF05088_consen 588 VALLRAYARYLRQI---G--FPFSQEY--------IEETLLAHPEIARLLVELFEARFDPDSQEAREAAQEE-LEEEIEE 653 (1528)
T ss_pred HHHHHHHHHHHHhc---C--CCCCHHH--------HHHHHHHHHHHHHHHHHHHHHhcCCCccccchhHHHH-HHHHHHH
Confidence 777778887 4552 1 2233333 6667778888888888888 8888821 222211 2222223
Q ss_pred HHHHHhhcCCCCccHHHHHHHHHHHHHH--HHHhC----c-cch------HHHHhhc--CCCeEEEEEEeEECCCCceEE
Q 008128 196 IVEAALKRDPHEIEFIQSVQESLHALER--VIAKN----S-HYV------NIMERLL--EPERMIVFRVPWVDDRGETHV 260 (577)
Q Consensus 196 ~~~~~~~~~~~~~ef~qav~~~~~~~~~--~~~~~----p-~y~------~~le~l~--~Per~i~~rvp~~dd~G~~~v 260 (577)
.++++ .+..+..-++.+..++++... ++..+ + .|. ..+..+. .|.++|.|.=| -
T Consensus 654 ~l~~V--~~l~~drILr~~~~~i~atlRTNff~~~~~g~~k~~lsfKldp~~l~~~p~P~P~~eifV~s~---------~ 722 (1528)
T PF05088_consen 654 ALDEV--ASLDEDRILRRFLNLIEATLRTNFFQPDEDGQPKPALSFKLDPSFLPDLPEPRPYFEIFVYSP---------R 722 (1528)
T ss_pred HHhhc--CCccHHHHHHHHHHHHHHHhcCcccccCccCCCCCeEEEEEcHHHcCCCCCCCCcEEEEEECC---------c
Confidence 23222 233344455666666544432 22221 1 111 2334444 45566665444 3
Q ss_pred EEEEEEEecCCCCCCCCCeeeecCCC--HHHHHHHhHHhHHhhhccCCCCCCceEEEecCCCC--CCHH----HHHHHHH
Q 008128 261 NRGFRVQFSQALGPCRGGLRFHPSMN--LSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKG--KSDN----EIMRFCQ 332 (577)
Q Consensus 261 ~~GyRVqhs~alGPakGGlRfhp~vt--~~evk~LA~~MT~KnAL~gLP~GGaKGGI~~DP~~--~s~~----Eler~~r 332 (577)
+.|+++.+... ++|||||+.... ..||..|+.+|+.|| +.||-||||||+.++... .++. |....++
T Consensus 723 ~eGvHLR~g~V---ARGGlRwSdR~eDfRtEvlgL~kaQ~vKN--avIvp~GsKGgfv~k~~~~~~~r~~~~~~~~~~y~ 797 (1528)
T PF05088_consen 723 FEGVHLRFGDV---ARGGLRWSDRPEDFRTEVLGLVKAQQVKN--AVIVPVGSKGGFVVKQLPDPADRDAWQAEGIACYK 797 (1528)
T ss_pred eEEEEcccccc---ccCcccccCCHHHHHHHHHHHHHHHHhcC--CcccCCCCceeEEecCCCCCCCHHHHHHHHHHHHH
Confidence 69999999987 999999964332 379999999999999 678999999999987433 2444 4456789
Q ss_pred HHHHHHhhh---c---------------CCCcc-cCCCCCcCChhHHHHHHHHhhhhhCC---ccccccCccccccCCCC
Q 008128 333 SFMNEIHRY---L---------------GPDKD-LPSEEMGVGTREMGYLFGQYRRLAGH---FQGSFTGPRIFWSGSSL 390 (577)
Q Consensus 333 ~f~~eL~~~---I---------------Gp~~D-VpapDvGt~~~em~~i~~~y~~~~g~---~~g~vTGKp~~~GGs~~ 390 (577)
.|++.|... + |+|-+ |-|.|=||- +|+.+++. ..|++-|..+..|||.|
T Consensus 798 ~fi~~lLd~TDN~~~g~vv~p~~vv~~D~dDpYLVVAADKGTA---------tfSD~AN~ia~~~gfWLgDAFASGGS~G 868 (1528)
T PF05088_consen 798 TFIRALLDLTDNLVDGKVVPPPDVVRYDGDDPYLVVAADKGTA---------TFSDIANEIAAEYGFWLGDAFASGGSAG 868 (1528)
T ss_pred HHHHHHHhhccCCCCCccCCCcceeecCCCCCceEeecCCCcc---------hHHHHHHHHHHHcCCCcchhhhcCCcCC
Confidence 999999864 1 12222 457777772 33333332 24789999999999988
Q ss_pred CC----CcchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHH--HHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHh
Q 008128 391 RT----EATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVL--EKLIAYGAIPVSVSDAKGYLVDEDGFDYMKIS 464 (577)
Q Consensus 391 r~----eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA--~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~ 464 (577)
+. +.|++|.+.+++..++++|.|+....|.|+|.|.++.-+. -.|.....|.||..|+....+||+- |++.-
T Consensus 869 YDHK~mGITArGAWesvkrHFrelg~D~q~~~fTvvGiGDMsGDVFGNGMLlS~~irLvaAF~H~hIFiDP~P-D~~~S- 946 (1528)
T PF05088_consen 869 YDHKKMGITARGAWESVKRHFRELGIDIQTDPFTVVGIGDMSGDVFGNGMLLSRHIRLVAAFNHRHIFIDPDP-DPAAS- 946 (1528)
T ss_pred CCchhhccchhhHHHHHHHHHHHhCCCcCCCceEEEEecCCCccccccchhcccceeEEEecCcceeecCcCC-Chhhh-
Confidence 75 7999999999999999999999999999999877776555 5677788899999999999999998 76431
Q ss_pred HHHHHH---h-hcCcccccccc--------cC-Cce-----------------EeCCCC----ccccccceeecCCcccc
Q 008128 465 FLRDIK---S-QQRSLRDYSKT--------YA-RSK-----------------YYDEAK----PWNERCDVAFPCASQNE 510 (577)
Q Consensus 465 ~l~~~k---~-~~g~l~~y~~~--------~p-~a~-----------------~i~~~e----il~~~cDIlIPcA~~n~ 510 (577)
-.|.+ + .+.++.+|... |+ .++ .+++.+ ++..|+|+|---.++.-
T Consensus 947 -f~ER~RLF~lprSsW~DYd~~lIS~GGGVf~R~aKsI~lS~e~r~~lgi~~~~~tp~eLi~aiL~apVDLlwnGGIGTY 1025 (1528)
T PF05088_consen 947 -FAERKRLFELPRSSWADYDKSLISKGGGVFSRSAKSIPLSPEMRAALGIEKDSLTPDELIRAILKAPVDLLWNGGIGTY 1025 (1528)
T ss_pred -HHHHHHHhcCCCCChhhcCHHHhCCCCceeecccCCCCCCHHHHHHhCCCCCccCHHHHHHHHhcCccceEecCCccce
Confidence 11111 1 33467777431 11 111 122322 34678888765443322
Q ss_pred c--------c---------hhhHhhhhccCceEEEecCCCCCCHHHHHHHHhCCcEEecchhccccceeehhhhhc
Q 008128 511 I--------D---------QSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVRYSIFYST 569 (577)
Q Consensus 511 I--------t---------~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI~viPD~~aNAGGVivS~~Ev~ 569 (577)
| + .-|+..| +||+|+||+|..+|+.++-.+..+|..+-.|++-||+||-||-.||+
T Consensus 1026 VKas~Es~~~vgDkaND~vRV~g~~l---rakVvgEGgNLG~TQ~gRiE~a~~GGriNtDaiDNSaGVd~SDhEVN 1098 (1528)
T PF05088_consen 1026 VKASTESHADVGDKANDAVRVNGSEL---RAKVVGEGGNLGLTQRGRIEYALNGGRINTDAIDNSAGVDCSDHEVN 1098 (1528)
T ss_pred EecCCCcccccccccCcceeechHHc---eEEEEecccccccchHHHHHHHHcCCccchhhhcccCCCcCccchhh
Confidence 2 1 2456666 99999999999999999999999999999999999999999999996
No 17
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=99.88 E-value=2.2e-23 Score=184.44 Aligned_cols=71 Identities=48% Similarity=0.717 Sum_probs=69.2
Q ss_pred cceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHHHHHhCCcEEecchhccccceeehhhhhcccc
Q 008128 499 CDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMAAGAGGVRYSIFYSTCFL 572 (577)
Q Consensus 499 cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI~viPD~~aNAGGVivS~~Ev~~~~ 572 (577)
||||+|||++++||.++|++| +||+|+||||+|+|++|+++|++|||+|+||+++|||||++||+|+..++
T Consensus 3 ~DI~~PcA~~~~I~~~~a~~l---~a~~V~egAN~~~t~~a~~~L~~rGi~~~PD~~~NaGGvi~s~~E~~~~~ 73 (102)
T smart00839 3 CDIFIPCALQNVINEANANRL---GAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGVIVSALEMLQNL 73 (102)
T ss_pred cCEEEeCCCcCcCCHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHCCCEEcCcceecCCCEEeehhhhhccc
Confidence 999999999999999999999 99999999999999999999999999999999999999999999998753
No 18
>PRK08374 homoserine dehydrogenase; Provisional
Probab=98.99 E-value=1.2e-09 Score=115.38 Aligned_cols=129 Identities=18% Similarity=0.298 Sum_probs=89.2
Q ss_pred ceEEEEecchHHHHHHHHHHH--------CC--CeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCc
Q 008128 417 LRCVVSGSGKIAMHVLEKLIA--------YG--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARS 486 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e--------~G--AkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a 486 (577)
.+|+|+||||||+++++.|.+ .| .+|++|+|++|++|||+|+|++++ .++++..+++..|...+ +.
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l---~~~~~~~~~~~~~~~~~-~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREA---KEVKENFGKLSNWGNDY-EV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHH---HHhhhccCchhhccccc-cc
Confidence 589999999999999999887 46 799999999999999999999775 77777777776552111 11
Q ss_pred eEeCCCCcc-ccccceeecCCcccccchhhHhhhhccCceEEEecCCC-CC--C-HHHHHHHHhCCcEEec
Q 008128 487 KYYDEAKPW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNM-PC--T-PEAVDVLKKANVLIAP 552 (577)
Q Consensus 487 ~~i~~~eil-~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~-p~--T-~eA~~iL~~rGI~viP 552 (577)
..++.++++ +.+|||+|.|+... ...+...++++.++.+|. ||- |+ + .+-.++-+++|+.+.-
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~-~a~~~~~~al~~G~~VVt--anK~~la~~~~el~~la~~~~~~~~~ 146 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK-NAHEWHLEALKEGKSVVT--SNKPPIAFHYDELLDLANERNLPYLF 146 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH-HHHHHHHHHHhhCCcEEE--CCHHHHHhCHHHHHHHHHHcCCeEEE
Confidence 122344566 57999999888432 233444444556777775 453 22 2 2334555677877763
No 19
>PRK06392 homoserine dehydrogenase; Provisional
Probab=98.93 E-value=2.7e-09 Score=112.40 Aligned_cols=131 Identities=23% Similarity=0.288 Sum_probs=89.1
Q ss_pred ceEEEEecchHHHHHHHHHHH--------CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceE
Q 008128 417 LRCVVSGSGKIAMHVLEKLIA--------YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKY 488 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e--------~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~ 488 (577)
.+|+|+||||||+.+++.|.+ .+.+||+|+|++|++++++|||++++ .++++. +++..| + .+.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l---~~~~~~-g~l~~~----~-~~~ 71 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKI---ISYKEK-GRLEEI----D-YEK 71 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHH---HHHHhc-CccccC----C-CCc
Confidence 379999999999999999987 46899999999999999999999875 555544 555443 1 111
Q ss_pred eCCCCccccccceeecCCcccccch----hhHhhhhccCceEEEecCC-CCCC---HHHHHHHHhCCcEEecchhcccc
Q 008128 489 YDEAKPWNERCDVAFPCASQNEIDQ----SDAINLVNSGCRILVEGSN-MPCT---PEAVDVLKKANVLIAPAMAAGAG 559 (577)
Q Consensus 489 i~~~eil~~~cDIlIPcA~~n~It~----enA~~l~~~~akiVvEgAN-~p~T---~eA~~iL~~rGI~viPD~~aNAG 559 (577)
++.++++..++||+|.|+..+. ++ +-....++.++.+|. || .|+. .+-.+.-+++|+.+.-.....+|
T Consensus 72 ~~~~~ll~~~~DVvVE~t~~~~-~g~~~~~~~~~aL~~G~hVVT--aNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g 147 (326)
T PRK06392 72 IKFDEIFEIKPDVIVDVTPASK-DGIREKNLYINAFEHGIDVVT--ANKSGLANHWHDIMDSASKNRRIIRYEATVAGG 147 (326)
T ss_pred CCHHHHhcCCCCEEEECCCCCC-cCchHHHHHHHHHHCCCEEEc--CCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeec
Confidence 2234456679999999996542 32 222444566777776 66 3333 23334446678877765544444
No 20
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.60 E-value=3.8e-07 Score=77.76 Aligned_cols=55 Identities=31% Similarity=0.337 Sum_probs=49.1
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+||+|++.++++..+..+.++++++++|+|+|++|+.+++.|.+.|.+.|.++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5899999999999998889999999999999999999999999986555666664
No 21
>PRK06270 homoserine dehydrogenase; Provisional
Probab=98.57 E-value=2.2e-07 Score=98.28 Aligned_cols=129 Identities=20% Similarity=0.242 Sum_probs=88.7
Q ss_pred ceEEEEecchHHHHHHHHHHHC----------CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCc
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAY----------GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARS 486 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~----------GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a 486 (577)
.+|+|.|+|+||+.+++.|.+. +.+|++|+|+++.+|+++|+|.+++ .+.++..+.+..| ++.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~---~~~~~~~~~~~~~----~~~ 75 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELA---LKVKEETGKLADY----PEG 75 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHH---HHHHhccCCcccC----ccc
Confidence 4899999999999999998765 5899999999999999999998775 4455555544443 211
Q ss_pred e-EeCCCCcc-ccccceeecCCcccccc----hhhHhhhhccCceEEEe--cCCCCCCHHHHHHHHhCCcEEec
Q 008128 487 K-YYDEAKPW-NERCDVAFPCASQNEID----QSDAINLVNSGCRILVE--GSNMPCTPEAVDVLKKANVLIAP 552 (577)
Q Consensus 487 ~-~i~~~eil-~~~cDIlIPcA~~n~It----~enA~~l~~~~akiVvE--gAN~p~T~eA~~iL~~rGI~viP 552 (577)
. ..+.++++ +.++||++.|+..+.-+ .+.+...++.++.+|++ +...-.-++-.+.-+++|+.+.-
T Consensus 76 ~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ 149 (341)
T PRK06270 76 GGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRY 149 (341)
T ss_pred cccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEE
Confidence 1 11223444 46799999999865443 45555666789999884 22221223444555678887763
No 22
>PLN02700 homoserine dehydrogenase family protein
Probab=97.87 E-value=5.9e-05 Score=81.37 Aligned_cols=145 Identities=23% Similarity=0.262 Sum_probs=87.5
Q ss_pred ceEEEEecchHHHHHHHHHHHC-------C--CeEEEEEcCCCeeeCCC----CCCHHhHhHHHHHHhhcCccccccc--
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAY-------G--AIPVSVSDAKGYLVDED----GFDYMKISFLRDIKSQQRSLRDYSK-- 481 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~-------G--AkVVaISDs~G~Iydp~----GLD~e~L~~l~~~k~~~g~l~~y~~-- 481 (577)
..|+|.|+||||+.+++.|.+. | .+|++|+|+++.+++++ |||.+.+......+.+...+..|..
T Consensus 4 i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~~~ 83 (377)
T PLN02700 4 IPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGALA 83 (377)
T ss_pred EEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhhcc
Confidence 5789999999999999887642 3 57999999999999975 9998776443334444444443310
Q ss_pred ccCC--------ceEeCCCCcc-ccccceeecCCcccccchhhHhhhhccCceEEEecCCCC-C--CHHHHHHHHhCCcE
Q 008128 482 TYAR--------SKYYDEAKPW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP-C--TPEAVDVLKKANVL 549 (577)
Q Consensus 482 ~~p~--------a~~i~~~eil-~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p-~--T~eA~~iL~~rGI~ 549 (577)
..++ .+.++..+.. ..+.+|+|.|+.. .-+.+...+.++.|+.+|. ||=. . ..+-.+.|+++|+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ViVD~T~s-~~~~~~y~~aL~~G~hVVT--aNK~~~a~~~~~~~~la~~~~~ 160 (377)
T PLN02700 84 GGCQVFNNSELSRKVIDIATLLGKSTGLVVVDCSAS-METIGALNEAVDLGCCIVL--ANKKPLTSTLEDYDKLAAHPRR 160 (377)
T ss_pred ccccccccccccchhhhHHHHhhccCCCEEEECCCC-hHHHHHHHHHHHCCCeEEc--CCchHhccCHHHHHHHHHcCCe
Confidence 0000 0001111112 3456899998875 3334555666677877775 6633 2 33334556677887
Q ss_pred Eecchhccccceeeh
Q 008128 550 IAPAMAAGAGGVRYS 564 (577)
Q Consensus 550 viPD~~aNAGGVivS 564 (577)
+.-.-..-+|=-+.+
T Consensus 161 ~~yEatVgaGlPiI~ 175 (377)
T PLN02700 161 IRHESTVGAGLPVIA 175 (377)
T ss_pred EEEEeeeeeccchHH
Confidence 775554444433333
No 23
>PRK06813 homoserine dehydrogenase; Validated
Probab=97.83 E-value=5.8e-05 Score=80.60 Aligned_cols=131 Identities=18% Similarity=0.180 Sum_probs=84.3
Q ss_pred ceEEEEecchHHHHHHHHHHHC--------C--CeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCc
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAY--------G--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARS 486 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~--------G--AkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a 486 (577)
.+|+|.|||+||+.+++.|.+. | .+|++|+|+++.+++++|+|.+++ .+.+.....+..|..
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~---l~~~~~~~~~~~~~~----- 74 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHL---LRYGGGSCAIEKYIE----- 74 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhh---hhccccccchhhhhc-----
Confidence 5799999999999999998753 2 578999999999999999998663 222111111111110
Q ss_pred eEeCCCCcc--ccccceeecCCcccccchhhHhhh----hccCceEEEecCCCC-CC---HHHHHHHHhCCcEEecchhc
Q 008128 487 KYYDEAKPW--NERCDVAFPCASQNEIDQSDAINL----VNSGCRILVEGSNMP-CT---PEAVDVLKKANVLIAPAMAA 556 (577)
Q Consensus 487 ~~i~~~eil--~~~cDIlIPcA~~n~It~enA~~l----~~~~akiVvEgAN~p-~T---~eA~~iL~~rGI~viPD~~a 556 (577)
....++. ..+.||+|.|+..+..+.+.|... +++|+.+|- ||=. ++ +|-.+.-+++|+.+.-....
T Consensus 75 --~~~~~~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVT--ANK~~la~~~~eL~~lA~~~g~~~~yEasV 150 (346)
T PRK06813 75 --HHPEERATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVA--ISKGALVTNWREINEAAKIANVRIRYSGAT 150 (346)
T ss_pred --cChHHHhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEc--CCcHHHhccHHHHHHHHHHcCCeEEEeeee
Confidence 0111222 237899999987776665555444 556777775 6643 22 34445556888888766544
Q ss_pred ccc
Q 008128 557 GAG 559 (577)
Q Consensus 557 NAG 559 (577)
-+|
T Consensus 151 ggG 153 (346)
T PRK06813 151 AAA 153 (346)
T ss_pred eec
Confidence 333
No 24
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.54 E-value=0.0028 Score=58.40 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCccccccc
Q 008128 402 FAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK 481 (577)
Q Consensus 402 ~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~ 481 (577)
++..++++.+.++++++|.|.|.|++|..+++.|.+.|...|.+.|.+ .+.+..+.+...... +.
T Consensus 5 g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~----------~~~~~~~~~~~~~~~-~~---- 69 (155)
T cd01065 5 GFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT----------LEKAKALAERFGELG-IA---- 69 (155)
T ss_pred HHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC----------HHHHHHHHHHHhhcc-cc----
Confidence 444555566777899999999999999999999999875556777762 222211111100000 00
Q ss_pred ccCCceEeCCCCccccccceeecCCcccccchhhH---hhhhccCceEEEecCCCCCCHHHHHHHHhCCcEEecch
Q 008128 482 TYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDA---INLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAM 554 (577)
Q Consensus 482 ~~p~a~~i~~~eil~~~cDIlIPcA~~n~It~enA---~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI~viPD~ 554 (577)
....+..+. -.++|++|-|+.....+.+.. ..-++ .-++|.+-+-.|...+..+.++++|+.++|+.
T Consensus 70 ----~~~~~~~~~-~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~-~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~ 139 (155)
T cd01065 70 ----IAYLDLEEL-LAEADLIINTTPVGMKPGDELPLPPSLLK-PGGVVYDVVYNPLETPLLKEARALGAKTIDGL 139 (155)
T ss_pred ----eeecchhhc-cccCCEEEeCcCCCCCCCCCCCCCHHHcC-CCCEEEEcCcCCCCCHHHHHHHHCCCceeCCH
Confidence 001111111 357999999987665411111 11112 33566666555643377788999999988864
No 25
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=97.52 E-value=0.00041 Score=81.70 Aligned_cols=144 Identities=15% Similarity=0.196 Sum_probs=88.5
Q ss_pred HHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHC---------CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhh
Q 008128 402 FAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY---------GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ 472 (577)
Q Consensus 402 ~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~---------GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~ 472 (577)
+++.+-+.+-.+-+..+|+|.|||+||+.+++.|.+. ..+|++|+|+++.+++++|+|.+.+ .+....
T Consensus 451 al~~LH~~f~~~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~---~~~~~~ 527 (819)
T PRK09436 451 ALRACHQSFFLSDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNW---REELAE 527 (819)
T ss_pred HHHHHHHHHhcccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHH---HHHHhh
Confidence 3333333333344678999999999999999998753 3578999999999999999998654 221111
Q ss_pred cCcccccccccCCceEeCCCCccccccceeecCCcccccchhhHhhhhccCceEEEecCCCC-CC------HHHHHHHHh
Q 008128 473 QRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP-CT------PEAVDVLKK 545 (577)
Q Consensus 473 ~g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p-~T------~eA~~iL~~ 545 (577)
. ...+ .....++-..-...+.||+|.|+....+... ..+.++.|+.+|. ||=. .+ +|-.+.-++
T Consensus 528 ~--~~~~----~~~~~~~~~~~~~~~~~vvvd~t~~~~~~~~-~~~al~~g~~VVt--aNK~~~a~~~~~~~el~~~a~~ 598 (819)
T PRK09436 528 A--GEPF----DLDRLIRLVKEYHLLNPVIVDCTSSQAVADQ-YADFLAAGFHVVT--PNKKANTSSYAYYHQLREAARK 598 (819)
T ss_pred c--cCCC----CHHHHHHHHhhcCCCCCEEEECCCChHHHHH-HHHHHHcCCEEEc--CCchhccCCHHHHHHHHHHHHH
Confidence 1 1110 0000010000013467999999987665443 3455677888875 7744 33 233345568
Q ss_pred CCcEEecchhcc
Q 008128 546 ANVLIAPAMAAG 557 (577)
Q Consensus 546 rGI~viPD~~aN 557 (577)
+|+.+.......
T Consensus 599 ~~~~~~yeatV~ 610 (819)
T PRK09436 599 SRRKFLYETNVG 610 (819)
T ss_pred cCCeEEEeeeec
Confidence 888887654433
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.49 E-value=0.001 Score=69.23 Aligned_cols=132 Identities=16% Similarity=0.192 Sum_probs=86.1
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHh
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKS 471 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~ 471 (577)
...|+.|++. .+++..+.++.|++|.|.|+|.+|+.+|+.|...|++| .+.|.+ + +++ ....+
T Consensus 130 ~~~~Ae~ai~---~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V-~v~~R~-----~-----~~~---~~~~~ 192 (287)
T TIGR02853 130 SIPTAEGAIM---MAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARV-FVGARS-----S-----ADL---ARITE 192 (287)
T ss_pred cHhHHHHHHH---HHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEE-EEEeCC-----H-----HHH---HHHHH
Confidence 3566666643 44455667999999999999999999999999999984 566652 1 122 11111
Q ss_pred hcCcccccccccCCceEeCCCCc--cccccceeecCCcccccchhhHhhhhccCceEEEecCCCCC-CHHHHHHHHhCCc
Q 008128 472 QQRSLRDYSKTYARSKYYDEAKP--WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPC-TPEAVDVLKKANV 548 (577)
Q Consensus 472 ~~g~l~~y~~~~p~a~~i~~~ei--l~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~-T~eA~~iL~~rGI 548 (577)
.+ .+.+.-+++ +-.++||+|-|.....++.+..+.+ +. -.+|+.-|..|- |+= +.-+++|+
T Consensus 193 -~g-----------~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~~~-k~-~aliIDlas~Pg~tdf--~~Ak~~G~ 256 (287)
T TIGR02853 193 -MG-----------LIPFPLNKLEEKVAEIDIVINTIPALVLTADVLSKL-PK-HAVIIDLASKPGGTDF--EYAKKRGI 256 (287)
T ss_pred -CC-----------CeeecHHHHHHHhccCCEEEECCChHHhCHHHHhcC-CC-CeEEEEeCcCCCCCCH--HHHHHCCC
Confidence 01 111111111 1248999999987777887766665 22 357888888773 433 56689998
Q ss_pred EEe-----cchhc
Q 008128 549 LIA-----PAMAA 556 (577)
Q Consensus 549 ~vi-----PD~~a 556 (577)
..+ |++++
T Consensus 257 ~a~~~~glPg~~a 269 (287)
T TIGR02853 257 KALLAPGLPGIVA 269 (287)
T ss_pred EEEEeCCCCcccC
Confidence 665 77764
No 27
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.48 E-value=0.00056 Score=66.01 Aligned_cols=112 Identities=21% Similarity=0.337 Sum_probs=61.5
Q ss_pred HHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCc
Q 008128 407 LADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARS 486 (577)
Q Consensus 407 l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a 486 (577)
++..+..+.||+++|.|||+||+.+|+.|..+|++ |.|+|. || -++ +.... .+|
T Consensus 14 ~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~-V~V~e~-----DP-----i~a--lqA~~------dGf------- 67 (162)
T PF00670_consen 14 MRATNLMLAGKRVVVIGYGKVGKGIARALRGLGAR-VTVTEI-----DP-----IRA--LQAAM------DGF------- 67 (162)
T ss_dssp HHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-E-EEEE-S-----SH-----HHH--HHHHH------TT--------
T ss_pred HhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCE-EEEEEC-----Ch-----HHH--HHhhh------cCc-------
Confidence 34457889999999999999999999999999999 678887 33 222 22221 111
Q ss_pred eEeCCCCccccccceeecCCcc-cccchhhHhhhhccCceEEEecCCCCCCHHHHHHHHhCCc
Q 008128 487 KYYDEAKPWNERCDVAFPCASQ-NEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANV 548 (577)
Q Consensus 487 ~~i~~~eil~~~cDIlIPcA~~-n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI 548 (577)
+..+-++. -..+||+|-|+.. ++|+.+.-.++ +++| +|+...-.+..-+- +.|++.++
T Consensus 68 ~v~~~~~a-~~~adi~vtaTG~~~vi~~e~~~~m-kdga-il~n~Gh~d~Eid~-~~L~~~~~ 126 (162)
T PF00670_consen 68 EVMTLEEA-LRDADIFVTATGNKDVITGEHFRQM-KDGA-ILANAGHFDVEIDV-DALEANAV 126 (162)
T ss_dssp EEE-HHHH-TTT-SEEEE-SSSSSSB-HHHHHHS--TTE-EEEESSSSTTSBTH-HHHHTCTS
T ss_pred EecCHHHH-HhhCCEEEECCCCccccCHHHHHHh-cCCe-EEeccCcCceeEee-ccccccCc
Confidence 11111111 2378999987764 67899988887 4466 55544333322222 34666644
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.25 E-value=0.0019 Score=67.40 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=79.9
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHH
Q 008128 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK 470 (577)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k 470 (577)
+..+|+.| ++.++++..+.++.|++|.|.|+|.+|+.++..|..+|++ |.+.|.+ .+++ ....
T Consensus 130 ns~~~aeg---av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~-V~v~~r~----------~~~~---~~~~ 192 (296)
T PRK08306 130 NSIPTAEG---AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGAN-VTVGARK----------SAHL---ARIT 192 (296)
T ss_pred ccHhHHHH---HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEECC----------HHHH---HHHH
Confidence 34567777 4445666677889999999999999999999999999997 5566662 1222 1111
Q ss_pred hhcCcccccccccCCceEeCCCCc--cccccceeecCCcccccchhhHhhhhccCceEEEecCCCC-CCHHHHHHHHhCC
Q 008128 471 SQQRSLRDYSKTYARSKYYDEAKP--WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAVDVLKKAN 547 (577)
Q Consensus 471 ~~~g~l~~y~~~~p~a~~i~~~ei--l~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p-~T~eA~~iL~~rG 547 (577)
.. +++++.-+++ +-.++||+|-|+....++.+....+ +.++ +|+.-|..| -|.- +.-+++|
T Consensus 193 -~~-----------G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l~~~-~~g~-vIIDla~~pggtd~--~~a~~~G 256 (296)
T PRK08306 193 -EM-----------GLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVLSKM-PPEA-LIIDLASKPGGTDF--EYAEKRG 256 (296)
T ss_pred -Hc-----------CCeeecHHHHHHHhCCCCEEEECCChhhhhHHHHHcC-CCCc-EEEEEccCCCCcCe--eehhhCC
Confidence 11 1222211111 1237999999887666777665555 2344 555555554 2321 2346789
Q ss_pred cEEe
Q 008128 548 VLIA 551 (577)
Q Consensus 548 I~vi 551 (577)
|.++
T Consensus 257 v~~~ 260 (296)
T PRK08306 257 IKAL 260 (296)
T ss_pred eEEE
Confidence 8776
No 29
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.05 E-value=0.01 Score=59.75 Aligned_cols=141 Identities=16% Similarity=0.187 Sum_probs=87.1
Q ss_pred chHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCe--EEEEEcCCCeeeCCCC--CCHHhHhHHHHHH
Q 008128 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDEDG--FDYMKISFLRDIK 470 (577)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAk--VVaISDs~G~Iydp~G--LD~e~L~~l~~~k 470 (577)
|+-=+..++..+++..+.+++++||+|.|.|..|..+|..|.+.|.+ -|.|.|++|-++.... ++..+ .++.
T Consensus 4 t~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~----~~la 79 (226)
T cd05311 4 TAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDK----NEIA 79 (226)
T ss_pred hHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHH----HHHH
Confidence 33334455566777778899999999999999999999999999987 7899999987765543 32211 1111
Q ss_pred hhcCcccccccccCCceEeCCCCccccccceeecCCcccccchhhHhhhhccCceEEEecCCCCC-CHHHHHHHHhCCc-
Q 008128 471 SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPC-TPEAVDVLKKANV- 548 (577)
Q Consensus 471 ~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~-T~eA~~iL~~rGI- 548 (577)
+..+. . ... .+-.+.+ ..+||+|=|+..+.++.+..+.+. .-.+|..-. +|+ |+-.. ..++.|.
T Consensus 80 ~~~~~-~-------~~~-~~l~~~l-~~~dvlIgaT~~G~~~~~~l~~m~--~~~ivf~ls-nP~~e~~~~-~A~~~ga~ 145 (226)
T cd05311 80 KETNP-E-------KTG-GTLKEAL-KGADVFIGVSRPGVVKKEMIKKMA--KDPIVFALA-NPVPEIWPE-EAKEAGAD 145 (226)
T ss_pred HHhcc-C-------ccc-CCHHHHH-hcCCEEEeCCCCCCCCHHHHHhhC--CCCEEEEeC-CCCCcCCHH-HHHHcCCc
Confidence 11100 0 000 0000112 258999999988888888877763 334666566 553 32222 2334466
Q ss_pred EEecc
Q 008128 549 LIAPA 553 (577)
Q Consensus 549 ~viPD 553 (577)
+++.+
T Consensus 146 i~a~G 150 (226)
T cd05311 146 IVATG 150 (226)
T ss_pred EEEeC
Confidence 45543
No 30
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.91 E-value=0.0029 Score=69.54 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=72.4
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHH
Q 008128 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK 470 (577)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k 470 (577)
..-.||.|++.+++.+. +..+.|++|+|.|+|++|+.+|+.|...|++ |.++|. ||. +. +...+
T Consensus 190 n~~gt~~s~~~ai~rat---~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~-ViV~d~-----dp~-----ra--~~A~~ 253 (425)
T PRK05476 190 NRYGTGESLLDGIKRAT---NVLIAGKVVVVAGYGDVGKGCAQRLRGLGAR-VIVTEV-----DPI-----CA--LQAAM 253 (425)
T ss_pred ccHHHHhhhHHHHHHhc---cCCCCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcC-----Cch-----hh--HHHHh
Confidence 33557777776665442 5568999999999999999999999999998 556665 332 11 01111
Q ss_pred hhcCcccccccccCCceEeCCCCccccccceeecCCc-ccccchhhHhhhhccCceEEEec-CCCCCCHHH
Q 008128 471 SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEG-SNMPCTPEA 539 (577)
Q Consensus 471 ~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~-~n~It~enA~~l~~~~akiVvEg-AN~p~T~eA 539 (577)
. +.+.++-++.+ ..+||+|+|+. .+.|+.+....+ +.++.++.-| .|..+..++
T Consensus 254 --~-----------G~~v~~l~eal-~~aDVVI~aTG~~~vI~~~~~~~m-K~GailiNvG~~d~Eid~~~ 309 (425)
T PRK05476 254 --D-----------GFRVMTMEEAA-ELGDIFVTATGNKDVITAEHMEAM-KDGAILANIGHFDNEIDVAA 309 (425)
T ss_pred --c-----------CCEecCHHHHH-hCCCEEEECCCCHHHHHHHHHhcC-CCCCEEEEcCCCCCccChHH
Confidence 0 11111112222 37999999974 356666555554 4466555444 455555554
No 31
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=96.90 E-value=0.0044 Score=73.07 Aligned_cols=144 Identities=17% Similarity=0.185 Sum_probs=84.7
Q ss_pred HHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHC--------C--CeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHh
Q 008128 402 FAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY--------G--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKS 471 (577)
Q Consensus 402 ~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~--------G--AkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~ 471 (577)
+++.+-+.+-.+-+-.+++|.||||||+.+++.|.+. | .+|++|+|+++.+++++|+|...+ .+...
T Consensus 444 av~~LH~~f~~~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~---~~~~~ 520 (810)
T PRK09466 444 LIQGLHQSLFRAEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRA---LAFFD 520 (810)
T ss_pred HHHHHHHHHhCcCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHH---HhhHH
Confidence 3444433333333556899999999999999998753 3 578999999999999999997654 22111
Q ss_pred hcCcccccccccCCceEeCCCCcc--ccccceeecCCcccccchhhHhhhhccCceEEEecCCCC-C---CH---HHHHH
Q 008128 472 QQRSLRDYSKTYARSKYYDEAKPW--NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP-C---TP---EAVDV 542 (577)
Q Consensus 472 ~~g~l~~y~~~~p~a~~i~~~eil--~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p-~---T~---eA~~i 542 (577)
... ..+ ....+- +.+- +.+-+|+|.|.....+...-. ..++.|..+|- ||=. . .. +-.+.
T Consensus 521 ~~~--~~~-----~~~~~~-e~i~~~~~~~~vvVd~t~~~~~~~~~~-~aL~~G~~VVt--aNK~~~a~~~~~~~~l~~~ 589 (810)
T PRK09466 521 DEA--VEW-----DEESLF-LWLRAHPYDELVVLDVTASEQLALQYP-DFASHGFHVIS--ANKLAGSSPSNFYRQIKDA 589 (810)
T ss_pred hhc--CCc-----cHHHHH-HHHhhcCCCCcEEEECCCChHHHHHHH-HHHHcCCEEEc--CCcccccccHHHHHHHHHH
Confidence 111 000 100000 0011 223469999997665543333 44556777775 7753 1 12 22244
Q ss_pred HHhCCcEEecchhcccc
Q 008128 543 LKKANVLIAPAMAAGAG 559 (577)
Q Consensus 543 L~~rGI~viPD~~aNAG 559 (577)
-+++|+.+.......+|
T Consensus 590 a~~~~~~~~yEasV~~g 606 (810)
T PRK09466 590 FAKTGRHWLYNATVGAG 606 (810)
T ss_pred HHHcCCeEEEeceeeec
Confidence 46788888766544333
No 32
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.87 E-value=0.0036 Score=69.59 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=66.5
Q ss_pred hHHHHHHH-HHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcC
Q 008128 396 GYGLVFFA-QLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (577)
Q Consensus 396 G~GV~~~~-~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g 474 (577)
.||+..++ ...++..+..+.|++|+|.|+|+||+.+|+.|...|++| .+.|. ||. +. .+... .
T Consensus 233 ~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~V-iV~e~-----dp~-----~a---~~A~~-~- 296 (476)
T PTZ00075 233 IYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARV-VVTEI-----DPI-----CA---LQAAM-E- 296 (476)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEE-EEEeC-----Cch-----hH---HHHHh-c-
Confidence 34443332 455566678999999999999999999999999999995 45554 221 10 00000 0
Q ss_pred cccccccccCCceEeCCCCccccccceeecCCc-ccccchhhHhhhhccCceEEEec
Q 008128 475 SLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEG 530 (577)
Q Consensus 475 ~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~-~n~It~enA~~l~~~~akiVvEg 530 (577)
+++..+-++++ ..+||++.|+. .+.|+.+....+ +.+|.+|-=|
T Consensus 297 ----------G~~~~~leell-~~ADIVI~atGt~~iI~~e~~~~M-KpGAiLINvG 341 (476)
T PTZ00075 297 ----------GYQVVTLEDVV-ETADIFVTATGNKDIITLEHMRRM-KNNAIVGNIG 341 (476)
T ss_pred ----------CceeccHHHHH-hcCCEEEECCCcccccCHHHHhcc-CCCcEEEEcC
Confidence 12222112222 37999999865 467887777766 4566554433
No 33
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.69 E-value=0.011 Score=64.90 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcc
Q 008128 397 YGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL 476 (577)
Q Consensus 397 ~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l 476 (577)
-++.+++-+.++..-.+|++++|.|.|.|.+|.-+|+.|.+.|.+.|.|+.. +.++... +.++.
T Consensus 159 VSi~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR----------T~erA~~---La~~~--- 222 (414)
T COG0373 159 VSISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANR----------TLERAEE---LAKKL--- 222 (414)
T ss_pred cchHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC----------CHHHHHH---HHHHh---
Confidence 3455666666766667799999999999999999999999999888999987 3444322 22211
Q ss_pred cccccccCCceEeCCCCc--cccccceeecC--CcccccchhhHhhhhccCce-EEEecCCCCC
Q 008128 477 RDYSKTYARSKYYDEAKP--WNERCDVAFPC--ASQNEIDQSDAINLVNSGCR-ILVEGSNMPC 535 (577)
Q Consensus 477 ~~y~~~~p~a~~i~~~ei--l~~~cDIlIPc--A~~n~It~enA~~l~~~~ak-iVvEgAN~p~ 535 (577)
+++++.-+++ .-.++||+|-| |+..+|+.++.....+.+.+ +|+.=||-+.
T Consensus 223 --------~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRd 278 (414)
T COG0373 223 --------GAEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRD 278 (414)
T ss_pred --------CCeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCC
Confidence 1333333333 24589999998 77899999999887665555 9999998773
No 34
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.57 E-value=0.0089 Score=65.55 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=65.3
Q ss_pred chHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcC
Q 008128 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (577)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g 474 (577)
||.+++ ..+++..+..+.|++|+|.|+|.+|..+|+.+...|++|+ ++|. ||. ++ ...+. .
T Consensus 184 ~g~s~~---~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~Vi-V~d~-----d~~-----R~---~~A~~-~- 244 (413)
T cd00401 184 CRESLI---DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVI-VTEV-----DPI-----CA---LQAAM-E- 244 (413)
T ss_pred hchhhH---HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEEC-----Chh-----hH---HHHHh-c-
Confidence 555543 5555666788999999999999999999999999999854 4665 332 22 11111 1
Q ss_pred cccccccccCCceEeCCCCccccccceeecCCc-ccccchhhHhhhhccCceEEEec
Q 008128 475 SLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEG 530 (577)
Q Consensus 475 ~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~-~n~It~enA~~l~~~~akiVvEg 530 (577)
++..+..++.+ ..+||+|.|+. ...++.+.... .+.++.+|.=|
T Consensus 245 ----------G~~~~~~~e~v-~~aDVVI~atG~~~~i~~~~l~~-mk~GgilvnvG 289 (413)
T cd00401 245 ----------GYEVMTMEEAV-KEGDIFVTTTGNKDIITGEHFEQ-MKDGAIVCNIG 289 (413)
T ss_pred ----------CCEEccHHHHH-cCCCEEEECCCCHHHHHHHHHhc-CCCCcEEEEeC
Confidence 12222111222 36899999875 34455543443 35577775545
No 35
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.43 E-value=0.017 Score=58.98 Aligned_cols=111 Identities=18% Similarity=0.216 Sum_probs=74.1
Q ss_pred ceEEEEec-chHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCC-CC
Q 008128 417 LRCVVSGS-GKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AK 493 (577)
Q Consensus 417 krVaIQGf-GNVG~~aA~~L~e-~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~-~e 493 (577)
.+|+|.|+ |++|+..++.+.+ .+.++++++|.+ ++.... . ..+ +....++ ++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~-----~~~~~~--------~-------~~~-----~i~~~~dl~~ 56 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP-----GSPLVG--------Q-------GAL-----GVAITDDLEA 56 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-----Cccccc--------c-------CCC-----CccccCCHHH
Confidence 48999998 9999999998876 479999999983 221110 0 000 1111111 23
Q ss_pred ccccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHHHH----HhCCcEEecchhc
Q 008128 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL----KKANVLIAPAMAA 556 (577)
Q Consensus 494 il~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL----~~rGI~viPD~~a 556 (577)
++. ++|+++-|+..+.. .+++...++.++.+|++ ....+++..+.| ++.++++.|.+.-
T Consensus 57 ll~-~~DvVid~t~p~~~-~~~~~~al~~G~~vvig--ttG~s~~~~~~l~~aa~~~~v~~s~n~s~ 119 (257)
T PRK00048 57 VLA-DADVLIDFTTPEAT-LENLEFALEHGKPLVIG--TTGFTEEQLAELEEAAKKIPVVIAPNFSI 119 (257)
T ss_pred hcc-CCCEEEECCCHHHH-HHHHHHHHHcCCCEEEE--CCCCCHHHHHHHHHHhcCCCEEEECcchH
Confidence 343 79999999977665 88888888999999987 445555443333 3357888888754
No 36
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.43 E-value=0.0092 Score=63.68 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=71.1
Q ss_pred CceEEEEecchHHHHHHHHHHHC----------CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCC
Q 008128 416 GLRCVVSGSGKIAMHVLEKLIAY----------GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYAR 485 (577)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~----------GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~ 485 (577)
-.+|.|.|||+||+.+++.|.+. ..+|++|+|+++..+. ++|...+ +.+...+.++
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~--~~~~~~~----~~~~~~~~~~-------- 68 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR--DLDLLNA----EVWTTDGALS-------- 68 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc--cccccch----hhheeccccc--------
Confidence 35899999999999999999874 3589999999998875 3333221 1111111110
Q ss_pred ceEeCCCCccccccceeecCCcccccchhhHh---hhhccCceEEEecCCCC-CCHH---HHHHHHhCCcEEecc
Q 008128 486 SKYYDEAKPWNERCDVAFPCASQNEIDQSDAI---NLVNSGCRILVEGSNMP-CTPE---AVDVLKKANVLIAPA 553 (577)
Q Consensus 486 a~~i~~~eil~~~cDIlIPcA~~n~It~enA~---~l~~~~akiVvEgAN~p-~T~e---A~~iL~~rGI~viPD 553 (577)
.+.+-++..+.||++++...+.-+.+.+. +.+++|-.+| -||=. ++.. -.+.-+++|+.+.=.
T Consensus 69 ---~~~~~~~~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVV--TaNK~~lA~~~~el~~~A~~~g~~l~yE 138 (333)
T COG0460 69 ---LGDEVLLDEDIDVVVELVGGDVEPAEPADLYLKALENGKHVV--TANKALLALHYHELREAAEKNGVKLLYE 138 (333)
T ss_pred ---ccHhhhccccCCEEEecCcccCCchhhHHHHHHHHHcCCeEE--CCCchHhHhhHHHHHHHHHHhCCeEEEE
Confidence 11123456789999999988666555332 2233444443 36644 4433 234446667665543
No 37
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.39 E-value=0.042 Score=53.25 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=44.2
Q ss_pred CCCCCcchHHHHHHHHHHHHHcCCCCCCceEEEEecch-HHHHHHHHHHHCCCeEEEEEcC
Q 008128 389 SLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 389 ~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGN-VG~~aA~~L~e~GAkVVaISDs 448 (577)
.....+|++.++..++.. ..+++|++|+|.|.|. +|..+|+.|.+.|++ |.++++
T Consensus 21 ~~~~p~~~~a~v~l~~~~----~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~-V~v~~r 76 (168)
T cd01080 21 PGFIPCTPAGILELLKRY----GIDLAGKKVVVVGRSNIVGKPLAALLLNRNAT-VTVCHS 76 (168)
T ss_pred CCccCChHHHHHHHHHHc----CCCCCCCEEEEECCcHHHHHHHHHHHhhCCCE-EEEEEC
Confidence 355678888877655544 5689999999999998 588899999999998 667765
No 38
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.38 E-value=0.065 Score=55.76 Aligned_cols=135 Identities=12% Similarity=0.024 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcC
Q 008128 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (577)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g 474 (577)
-|+|++.+++. ...++++++|+|.|.|.+|+.++..|.+.|++-|.|.|.+ .++...+.+.-...
T Consensus 110 D~~G~~~~l~~----~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~----------~~ka~~la~~l~~~- 174 (284)
T PRK12549 110 DWSGFAESFRR----GLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD----------PARAAALADELNAR- 174 (284)
T ss_pred CHHHHHHHHHh----hccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHHHHhh-
Confidence 46777777763 3356889999999999999999999999998668888872 33433333221110
Q ss_pred cccccccccCCceEeCCCCcc--ccccceeecCCcccccch----hhHhhhhccCceEEEecCCCCCCHHHHHHHHhCCc
Q 008128 475 SLRDYSKTYARSKYYDEAKPW--NERCDVAFPCASQNEIDQ----SDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANV 548 (577)
Q Consensus 475 ~l~~y~~~~p~a~~i~~~eil--~~~cDIlIPcA~~n~It~----enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI 548 (577)
++.......+++. -.++||+|-|+.-+.-.. -+...| + +..+|.+-.-+|....-.+.-+++|.
T Consensus 175 --------~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l-~-~~~~v~DivY~P~~T~ll~~A~~~G~ 244 (284)
T PRK12549 175 --------FPAARATAGSDLAAALAAADGLVHATPTGMAKHPGLPLPAELL-R-PGLWVADIVYFPLETELLRAARALGC 244 (284)
T ss_pred --------CCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHc-C-CCcEEEEeeeCCCCCHHHHHHHHCCC
Confidence 1111111112221 146899999865321110 011223 2 35688899888864455566678888
Q ss_pred EEecch
Q 008128 549 LIAPAM 554 (577)
Q Consensus 549 ~viPD~ 554 (577)
.++.+.
T Consensus 245 ~~~~G~ 250 (284)
T PRK12549 245 RTLDGG 250 (284)
T ss_pred eEecCH
Confidence 877664
No 39
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.36 E-value=0.015 Score=53.75 Aligned_cols=106 Identities=18% Similarity=0.168 Sum_probs=67.9
Q ss_pred CCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeC
Q 008128 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD 490 (577)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~ 490 (577)
-.++++++|.|.|.|.+|+.++..|.+.|++-|.|.+. +.+++..|.+.. +. ...+.++
T Consensus 7 ~~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR----------t~~ra~~l~~~~---~~--------~~~~~~~ 65 (135)
T PF01488_consen 7 FGDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNR----------TPERAEALAEEF---GG--------VNIEAIP 65 (135)
T ss_dssp HSTGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES----------SHHHHHHHHHHH---TG--------CSEEEEE
T ss_pred cCCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC----------CHHHHHHHHHHc---Cc--------cccceee
Confidence 34899999999999999999999999999997888886 344543333221 10 0122222
Q ss_pred CCCcc--ccccceeecCCcc--cccchhhHhhhhccCceEEEecCCCC-CCHH
Q 008128 491 EAKPW--NERCDVAFPCASQ--NEIDQSDAINLVNSGCRILVEGSNMP-CTPE 538 (577)
Q Consensus 491 ~~eil--~~~cDIlIPcA~~--n~It~enA~~l~~~~akiVvEgAN~p-~T~e 538 (577)
-+++. ..++||+|-|+.. ..++.+......+ +.++|++-|+-+ ++|+
T Consensus 66 ~~~~~~~~~~~DivI~aT~~~~~~i~~~~~~~~~~-~~~~v~Dla~Pr~i~~~ 117 (135)
T PF01488_consen 66 LEDLEEALQEADIVINATPSGMPIITEEMLKKASK-KLRLVIDLAVPRDIDPE 117 (135)
T ss_dssp GGGHCHHHHTESEEEE-SSTTSTSSTHHHHTTTCH-HCSEEEES-SS-SB-TT
T ss_pred HHHHHHHHhhCCeEEEecCCCCcccCHHHHHHHHh-hhhceeccccCCCCChh
Confidence 22332 3589999998764 4778877765411 136999999633 4444
No 40
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.34 E-value=0.066 Score=62.84 Aligned_cols=124 Identities=21% Similarity=0.234 Sum_probs=90.2
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCe--EEEEEcCCCeeeCCC--CCCHHhHhHH
Q 008128 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDED--GFDYMKISFL 466 (577)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAk--VVaISDs~G~Iydp~--GLD~e~L~~l 466 (577)
--.-||-=+..++-.+++-.+.+++..||+|.|.|.-|..++++|...|.+ =+.+.|++|.|+... +++..+.
T Consensus 160 D~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~--- 236 (752)
T PRK07232 160 DQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKA--- 236 (752)
T ss_pred ccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHH---
Confidence 335577777788888888889999999999999999999999999999983 478999999999865 3554332
Q ss_pred HHHHhhcCcccccccccCCceEeCCCCccccccceeecCCcccccchhhHhhhhccCceEEEecCCCC
Q 008128 467 RDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP 534 (577)
Q Consensus 467 ~~~k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p 534 (577)
.+... ++.. +-.+.+. .+||||=++..+.+|++-.+.+. .=.||---||--
T Consensus 237 -~~a~~-----------~~~~--~l~~~i~-~~~v~iG~s~~g~~~~~~v~~M~--~~piifalsNP~ 287 (752)
T PRK07232 237 -AYAVD-----------TDAR--TLAEAIE-GADVFLGLSAAGVLTPEMVKSMA--DNPIIFALANPD 287 (752)
T ss_pred -HHhcc-----------CCCC--CHHHHHc-CCCEEEEcCCCCCCCHHHHHHhc--cCCEEEecCCCC
Confidence 11100 0000 0012222 37999999999999999999984 345777777743
No 41
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=96.32 E-value=0.1 Score=55.16 Aligned_cols=53 Identities=25% Similarity=0.238 Sum_probs=45.1
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
-..+|..||+..++ +.+.+++||+|+|.| +..||.-++.+|.+.||+ |+++.+
T Consensus 146 ~~PcTp~avi~lL~----~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~AT-Vtvchs 199 (299)
T PLN02516 146 FLPCTPKGCLELLS----RSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADAT-VTVVHS 199 (299)
T ss_pred CCCCCHHHHHHHHH----HhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEeCC
Confidence 35799999776655 568999999999999 678999999999999998 677776
No 42
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=96.29 E-value=0.22 Score=56.91 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=121.9
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCCcccCCCCCcCChhHHHHHHHHhhhhhCCccccccCccccccCCCCCCCcchHHHHHH
Q 008128 323 SDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFF 402 (577)
Q Consensus 323 s~~Eler~~r~f~~eL~~~IGp~~DVpapDvGt~~~em~~i~~~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~ 402 (577)
+.+|-..|...||..+.+-+||..-|==.|++..- ---|.+.|+.-. -|+ .+--..||-=+..+
T Consensus 244 ~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~--af~iL~ryr~~i----~~F----------nDDiQGTaaV~lAg 307 (581)
T PLN03129 244 TGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN--AFRLLQRYRTTH----LCF----------NDDIQGTAAVALAG 307 (581)
T ss_pred chhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc--HHHHHHHhccCC----CEe----------ccccchHHHHHHHH
Confidence 46678889999999999888887777777877532 223556775211 111 23334577777778
Q ss_pred HHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHH-----CCC------eEEEEEcCCCeeeCCCC--CCHHhHhHHHHH
Q 008128 403 AQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA-----YGA------IPVSVSDAKGYLVDEDG--FDYMKISFLRDI 469 (577)
Q Consensus 403 ~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e-----~GA------kVVaISDs~G~Iydp~G--LD~e~L~~l~~~ 469 (577)
+-.+++-.+.+|+..||++.|.|..|..+|+.|.+ .|. +=+-+.|++|-|++... ++..+.. +
T Consensus 308 ll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~----f 383 (581)
T PLN03129 308 LLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKP----F 383 (581)
T ss_pred HHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHH----H
Confidence 88888888999999999999999999999999987 475 45789999999998653 4433321 1
Q ss_pred HhhcCcccccccccCCceEeCCCCcc-ccccceeecCCc-ccccchhhHhhhhc-cCceEEEecCCC
Q 008128 470 KSQQRSLRDYSKTYARSKYYDEAKPW-NERCDVAFPCAS-QNEIDQSDAINLVN-SGCRILVEGSNM 533 (577)
Q Consensus 470 k~~~g~l~~y~~~~p~a~~i~~~eil-~~~cDIlIPcA~-~n~It~enA~~l~~-~~akiVvEgAN~ 533 (577)
....... .+-.++. .++.||||=++. .+.+|++-.+.+.+ +.=.||---+|-
T Consensus 384 a~~~~~~------------~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 384 AHDHEPG------------ASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred HhhcccC------------CCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 1110000 0111122 468899999986 58999999988853 234577767764
No 43
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.29 E-value=0.09 Score=56.84 Aligned_cols=53 Identities=32% Similarity=0.313 Sum_probs=44.6
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
-...|..||+. +|++.+.+++||+|+|.| +.-||.-++.+|.+.+|+ |+++.+
T Consensus 210 f~PCTp~avie----lL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~AT-VTicHs 263 (364)
T PLN02616 210 FVPCTPKGCIE----LLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDAT-VSIVHS 263 (364)
T ss_pred CCCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCe-EEEeCC
Confidence 45789999765 455668999999999999 788999999999999998 577765
No 44
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=96.25 E-value=0.044 Score=60.09 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=89.6
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCe--EEEEEcCCCeeeCCC-CCCHHhHhHHHH
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDED-GFDYMKISFLRD 468 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAk--VVaISDs~G~Iydp~-GLD~e~L~~l~~ 468 (577)
-.-||-=+..++-.+|+-.|.+|+..+|++.|.|.-|..++++|...|.+ =|.+.|+.|.||+.. -++...
T Consensus 175 qqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~------ 248 (432)
T COG0281 175 QQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQ------ 248 (432)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccch------
Confidence 34577777778888888889999999999999999999999999999986 588999999999654 211111
Q ss_pred HHhhcCcccccccccCCceEeCCCCccccccceeecCCcccccchhhHhhhhccCceEEEecCCC
Q 008128 469 IKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNM 533 (577)
Q Consensus 469 ~k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~ 533 (577)
+|.... ... ...+.. +.-...+||||=|+..+.++++-++.+.++ .+|---||-
T Consensus 249 ~k~~~a-~~~------~~~~~~--~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~--PiIfalaNP 302 (432)
T COG0281 249 KKYAKA-IED------TGERTL--DLALAGADVLIGVSGVGAFTEEMVKEMAKH--PIIFALANP 302 (432)
T ss_pred HHHHHH-Hhh------hccccc--cccccCCCEEEEcCCCCCcCHHHHHHhccC--CEEeecCCC
Confidence 111100 000 000110 113468999999999999999999999544 677767763
No 45
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.09 E-value=0.0069 Score=54.02 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=50.1
Q ss_pred ecchHHHHHHHHHHHC----CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCC-CCccc-
Q 008128 423 GSGKIAMHVLEKLIAY----GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AKPWN- 496 (577)
Q Consensus 423 GfGNVG~~aA~~L~e~----GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~-~eil~- 496 (577)
|+|+||+.+++.|.+. +.++++|+|++ .+.+++ . .... ++.....+ +++++
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~-----~----~~~~-------------~~~~~~~~~~~~~~~ 57 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKD-----W----AASF-------------PDEAFTTDLEELIDD 57 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETT-----H----HHHH-------------THSCEESSHHHHHTH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhh-----h----hhhc-------------ccccccCCHHHHhcC
Confidence 8999999999999875 68999999998 666655 1 1110 01111111 23333
Q ss_pred cccceeecCCcccccchhhHhhhhccCceEEE
Q 008128 497 ERCDVAFPCASQNEIDQSDAINLVNSGCRILV 528 (577)
Q Consensus 497 ~~cDIlIPcA~~n~It~enA~~l~~~~akiVv 528 (577)
.++||+|.|+..+.+ .+-+...++.|+.+|.
T Consensus 58 ~~~dvvVE~t~~~~~-~~~~~~~L~~G~~VVt 88 (117)
T PF03447_consen 58 PDIDVVVECTSSEAV-AEYYEKALERGKHVVT 88 (117)
T ss_dssp TT-SEEEE-SSCHHH-HHHHHHHHHTTCEEEE
T ss_pred cCCCEEEECCCchHH-HHHHHHHHHCCCeEEE
Confidence 489999999655544 3455566667777776
No 46
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.04 E-value=0.027 Score=53.33 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=63.4
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCccc
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWN 496 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil~ 496 (577)
++|.+.|+|++|+..|+.|.+.|..| .+-|. +.+++.. ..+. +++..+.-.-+-
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v-~~~d~----------~~~~~~~---~~~~------------g~~~~~s~~e~~ 55 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEV-TVYDR----------SPEKAEA---LAEA------------GAEVADSPAEAA 55 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEE-EEEES----------SHHHHHH---HHHT------------TEEEESSHHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeE-Eeecc----------chhhhhh---hHHh------------hhhhhhhhhhHh
Confidence 58999999999999999999999995 44454 3344322 2211 223232211223
Q ss_pred cccceeecCCcccccchhhHhh--hhc--cCceEEEecCCCC--CCHHHHHHHHhCCcEEecch
Q 008128 497 ERCDVAFPCASQNEIDQSDAIN--LVN--SGCRILVEGSNMP--CTPEAVDVLKKANVLIAPAM 554 (577)
Q Consensus 497 ~~cDIlIPcA~~n~It~enA~~--l~~--~~akiVvEgAN~p--~T~eA~~iL~~rGI~viPD~ 554 (577)
..||+++-|-.......+.... +.. ..=++|++-++.. .+.+..+.++++|+.|+=--
T Consensus 56 ~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 56 EQADVVILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp HHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred hcccceEeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeee
Confidence 4779888776543333332222 222 2456777776654 35566788899999887443
No 47
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.96 E-value=0.17 Score=54.37 Aligned_cols=95 Identities=22% Similarity=0.189 Sum_probs=67.5
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHH
Q 008128 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDI 469 (577)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~ 469 (577)
-...|..||+..+ ++.+.+++||+|+|.| +..||.-+|.+|.+.+|+ |+++.+.- + |.
T Consensus 193 ~~PCTp~avi~LL----~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~AT-VTicHs~T----~---nl--------- 251 (345)
T PLN02897 193 FVSCTPKGCVELL----IRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDAT-VSTVHAFT----K---DP--------- 251 (345)
T ss_pred CcCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCE-EEEEcCCC----C---CH---------
Confidence 3578999987665 5668899999999999 677999999999999998 56766511 1 11
Q ss_pred HhhcCcccccccccCCceEeCCCCccccccceeecCCc-ccccchhhHhhhhccCceEEEecCCC
Q 008128 470 KSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGSNM 533 (577)
Q Consensus 470 k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~-~n~It~enA~~l~~~~akiVvEgAN~ 533 (577)
.+ +...+||+|-|+. .+.++.+..+ .+|-+|==|-|-
T Consensus 252 -------~~----------------~~~~ADIvIsAvGkp~~v~~d~vk----~GavVIDVGin~ 289 (345)
T PLN02897 252 -------EQ----------------ITRKADIVIAAAGIPNLVRGSWLK----PGAVVIDVGTTP 289 (345)
T ss_pred -------HH----------------HHhhCCEEEEccCCcCccCHHHcC----CCCEEEEccccc
Confidence 11 1247788888877 4677766543 477666556553
No 48
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.95 E-value=0.17 Score=53.02 Aligned_cols=53 Identities=19% Similarity=0.359 Sum_probs=44.6
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
...+|..|++..+ ++.+.+++||+|+|.| +..||.-+|.+|...||+ |+++.+
T Consensus 135 ~~PcTp~avi~lL----~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~at-Vtichs 188 (282)
T PRK14169 135 VVASTPYGIMALL----DAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDAT-VTIAHS 188 (282)
T ss_pred CCCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEECC
Confidence 4589998887655 5568999999999999 678999999999999998 567765
No 49
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=95.93 E-value=0.049 Score=51.76 Aligned_cols=105 Identities=19% Similarity=0.316 Sum_probs=63.8
Q ss_pred ceEEEEecchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccC------Cce--
Q 008128 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYA------RSK-- 487 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e-~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p------~a~-- 487 (577)
.+|+|.|||.+|+.+++.+.+ .+..++++.|. .|++.+..|+++-..+|.+..-.. +. +.+
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~---------~~~~~~a~ll~~Ds~hg~~~~~v~-~~~~~l~i~g~~i 70 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL---------TDPETLAHLLKYDSVHGRFPGEVE-VDEDGLIVNGKKI 70 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC---------CCHHHHHHHhcccCCCCCCCCcEE-EeCCEEEECCEEE
Confidence 379999999999999998875 57899999874 244455445544333444322110 00 111
Q ss_pred -Ee---CCCC-cc-ccccceeecCCcccccchhhHhhhhccCceEEEecCC
Q 008128 488 -YY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (577)
Q Consensus 488 -~i---~~~e-il-~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (577)
.+ ++.+ +| ...+||++.| ++.-.+.+.+..-++.+||-|+=+|-
T Consensus 71 ~~~~~~~p~~~~w~~~gvDiVie~-tG~f~~~~~~~~hl~~GakkViisap 120 (149)
T smart00846 71 KVLAERDPANLPWKELGVDIVVEC-TGKFTTREKASAHLKAGAKKVIISAP 120 (149)
T ss_pred EEEecCChHHCcccccCCeEEEec-cccccchHHHHHHHHcCCCEEEeCCC
Confidence 11 1112 25 4578999999 55666767665555667777766653
No 50
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.92 E-value=0.043 Score=57.07 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=68.4
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEe-CCCCcc
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DEAKPW 495 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i-~~~eil 495 (577)
++|.|+|+|++|+..|+.|.+.|.+| .+.|.+ .+++. ...+ .+ +... +.+++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v-~v~dr~----------~~~~~---~~~~-~g-----------~~~~~~~~e~~ 54 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEV-VGYDRN----------PEAVE---ALAE-EG-----------ATGADSLEELV 54 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeE-EEEECC----------HHHHH---HHHH-CC-----------CeecCCHHHHH
Confidence 37999999999999999999999985 455552 23321 1211 11 1111 112222
Q ss_pred cc--ccceeecCCcccccchhhHhhhh---ccCceEEEecCC-CC-CCHHHHHHHHhCCcEEecchhcccccee
Q 008128 496 NE--RCDVAFPCASQNEIDQSDAINLV---NSGCRILVEGSN-MP-CTPEAVDVLKKANVLIAPAMAAGAGGVR 562 (577)
Q Consensus 496 ~~--~cDIlIPcA~~n~It~enA~~l~---~~~akiVvEgAN-~p-~T~eA~~iL~~rGI~viPD~~aNAGGVi 562 (577)
.. .+|+++-|-.......+....+. +.+ .+|+..++ .| .+.+..+.++++|+.|+ | +..+||+.
T Consensus 55 ~~~~~~dvvi~~v~~~~~~~~v~~~l~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~~-d-apvsG~~~ 125 (301)
T PRK09599 55 AKLPAPRVVWLMVPAGEITDATIDELAPLLSPG-DIVIDGGNSYYKDDIRRAELLAEKGIHFV-D-VGTSGGVW 125 (301)
T ss_pred hhcCCCCEEEEEecCCcHHHHHHHHHHhhCCCC-CEEEeCCCCChhHHHHHHHHHHHcCCEEE-e-CCCCcCHH
Confidence 21 36776665544423333222332 234 45666655 44 45556688999999998 6 67777754
No 51
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.90 E-value=0.038 Score=60.61 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=70.3
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhc
Q 008128 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ 473 (577)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~ 473 (577)
.||.+++.+ +++..+..+.|++|+|.|+|++|..+|+.+...|++|+ +.|. ||. +. .+... .
T Consensus 176 g~g~s~~~~---i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~Vi-V~d~-----dp~-----r~---~~A~~-~ 237 (406)
T TIGR00936 176 GTGQSTIDG---ILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVI-VTEV-----DPI-----RA---LEAAM-D 237 (406)
T ss_pred ccchhHHHH---HHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEE-EEeC-----Chh-----hH---HHHHh-c
Confidence 455554433 33444667999999999999999999999999999955 4554 332 11 11110 1
Q ss_pred CcccccccccCCceEeCCCCccccccceeecCCc-ccccchhhHhhhhccCceEEEecC-CCCCCHHHH-HHHHh
Q 008128 474 RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGS-NMPCTPEAV-DVLKK 545 (577)
Q Consensus 474 g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~-~n~It~enA~~l~~~~akiVvEgA-N~p~T~eA~-~iL~~ 545 (577)
+...++.++.+ ..+||+|.|+. .+.|+.+....+ +.++.++.-|- +..+..++- +.+.+
T Consensus 238 -----------G~~v~~leeal-~~aDVVItaTG~~~vI~~~~~~~m-K~GailiN~G~~~~eId~~aL~~~~~~ 299 (406)
T TIGR00936 238 -----------GFRVMTMEEAA-KIGDIFITATGNKDVIRGEHFENM-KDGAIVANIGHFDVEIDVKALEELAVE 299 (406)
T ss_pred -----------CCEeCCHHHHH-hcCCEEEECCCCHHHHHHHHHhcC-CCCcEEEEECCCCceeCHHHHHHHHhh
Confidence 11111112222 36899998764 355665544443 55676655443 444555543 44433
No 52
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.88 E-value=0.11 Score=48.98 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=64.7
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHh
Q 008128 393 EATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKS 471 (577)
Q Consensus 393 eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~ 471 (577)
..|..|+. +++++.+.+++|++|+|.| ...||.-++..|.+.|+. |.+++++. -|.++
T Consensus 9 p~t~~a~~----~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gat-V~~~~~~t-------~~l~~--------- 67 (140)
T cd05212 9 SPVAKAVK----ELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGAT-VYSCDWKT-------IQLQS--------- 67 (140)
T ss_pred ccHHHHHH----HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeCCCC-------cCHHH---------
Confidence 45666654 4556678999999999999 788999999999999999 45666522 12111
Q ss_pred hcCcccccccccCCceEeCCCCccccccceeecCCcc-cccchhhHhhhhccCceEEEecCCC
Q 008128 472 QQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ-NEIDQSDAINLVNSGCRILVEGSNM 533 (577)
Q Consensus 472 ~~g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~~-n~It~enA~~l~~~~akiVvEgAN~ 533 (577)
.-..|||++-|+.. +.|+.+. ++.++-+|-=|-|.
T Consensus 68 -----------------------~v~~ADIVvsAtg~~~~i~~~~----ikpGa~Vidvg~~~ 103 (140)
T cd05212 68 -----------------------KVHDADVVVVGSPKPEKVPTEW----IKPGATVINCSPTK 103 (140)
T ss_pred -----------------------HHhhCCEEEEecCCCCccCHHH----cCCCCEEEEcCCCc
Confidence 01377888888764 5566554 34588877666666
No 53
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=95.88 E-value=0.034 Score=59.56 Aligned_cols=106 Identities=18% Similarity=0.286 Sum_probs=70.9
Q ss_pred ceEEEEecchHHHHHHHHHHHC----CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCccccccc------ccCC-
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAY----GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR- 485 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~----GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~------~~p~- 485 (577)
.+|+|-|||-||+.+.+.|.+. ...+|+|-|. .|.+.+..|+++-..+|.+..-.+ .+.+
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~---------~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~ 72 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL---------ADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDD 72 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC---------CCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCE
Confidence 4799999999999999999874 4788888764 255666667766555454322110 0111
Q ss_pred -ceEe---CCCC-cc-ccccceeecCCcccccchhhHhhhhccCceEEEecCC
Q 008128 486 -SKYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (577)
Q Consensus 486 -a~~i---~~~e-il-~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (577)
.... ++++ .| +..+||++.|+.. ..+.+.|+..++.||+.|.=.|-
T Consensus 73 ~i~v~~~~~p~~~~w~~~gvDiVle~tG~-~~s~~~a~~~l~aGAk~V~iSap 124 (336)
T PRK13535 73 AIRLLHERDIASLPWRELGVDVVLDCTGV-YGSREDGEAHIAAGAKKVLFSHP 124 (336)
T ss_pred EEEEEEcCCcccCcccccCCCEEEEccch-hhhHHHHHHHHHcCCEEEEecCC
Confidence 1112 2222 47 4799999999965 47888888888889888876643
No 54
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.86 E-value=0.059 Score=57.53 Aligned_cols=107 Identities=17% Similarity=0.261 Sum_probs=70.4
Q ss_pred ceEEEEecchHHHHHHHHHHHCC--CeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccc------cccCC--c
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYG--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYS------KTYAR--S 486 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~G--AkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~------~~~p~--a 486 (577)
.||+|=|||-.|+.+++.+.+.+ ..||+|.|. .|++-+..|+++...+|.+..-. ..+.+ .
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~---------t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I 72 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL---------TDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGI 72 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC---------CCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceE
Confidence 48999999999999999999875 899999994 23344445555543344332211 11111 1
Q ss_pred eEe---CCCC-cc-ccccceeecCCcccccchhhHhhhhcc-CceEEEecCCC
Q 008128 487 KYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNS-GCRILVEGSNM 533 (577)
Q Consensus 487 ~~i---~~~e-il-~~~cDIlIPcA~~n~It~enA~~l~~~-~akiVvEgAN~ 533 (577)
+.. +++. +| +..+||.+.|+..-. +.+++.+.++. |||-|.-+|=.
T Consensus 73 ~v~~~~~p~~l~w~d~gvdiVve~Tg~f~-~~e~~~~hl~agGaKkV~isap~ 124 (335)
T COG0057 73 KVLAERDPANLPWADLGVDIVVECTGKFT-GREKAEKHLKAGGAKKVLISAPG 124 (335)
T ss_pred EEEecCChHHCCccccCccEEEECCCCcc-chhhHHHHHHhcCCCEEEEcCCC
Confidence 111 1122 35 557899999998776 89999977666 58888877643
No 55
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.83 E-value=0.026 Score=51.52 Aligned_cols=116 Identities=20% Similarity=0.275 Sum_probs=70.5
Q ss_pred ceEEEEec-chHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCC-CC
Q 008128 417 LRCVVSGS-GKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AK 493 (577)
Q Consensus 417 krVaIQGf-GNVG~~aA~~L~e-~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~-~e 493 (577)
.||+|.|+ |++|+.+++.+.+ .+..++++.|++.. +-.|-|+.++ . +. .. .+....+. ++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~--~~~g~d~g~~---~------~~-~~-----~~~~v~~~l~~ 63 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS--AKVGKDVGEL---A------GI-GP-----LGVPVTDDLEE 63 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS--TTTTSBCHHH---C------TS-ST------SSBEBS-HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc--ccccchhhhh---h------Cc-CC-----cccccchhHHH
Confidence 48999999 9999999999998 78999999998552 1135554432 1 00 00 01111222 23
Q ss_pred ccccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHHHHHh----CCcEEecc
Q 008128 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKK----ANVLIAPA 553 (577)
Q Consensus 494 il~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~----rGI~viPD 553 (577)
++.. |||+|-++.... ..++++..++.+..+|+.=.- .+++..+.|++ -++++.|.
T Consensus 64 ~~~~-~DVvIDfT~p~~-~~~~~~~~~~~g~~~ViGTTG--~~~~~~~~l~~~a~~~~vl~a~N 123 (124)
T PF01113_consen 64 LLEE-ADVVIDFTNPDA-VYDNLEYALKHGVPLVIGTTG--FSDEQIDELEELAKKIPVLIAPN 123 (124)
T ss_dssp HTTH--SEEEEES-HHH-HHHHHHHHHHHT-EEEEE-SS--SHHHHHHHHHHHTTTSEEEE-SS
T ss_pred hccc-CCEEEEcCChHH-hHHHHHHHHhCCCCEEEECCC--CCHHHHHHHHHHhccCCEEEeCC
Confidence 3444 999999995443 356777777889999985432 35555555655 45666664
No 56
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.81 E-value=0.22 Score=52.62 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=43.4
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
..+|..|++.. |++.+.+++||+|+|.| +.-||.-++.+|.+.||+ |+++.+
T Consensus 138 ~PcTp~aii~l----L~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~at-Vtv~hs 190 (297)
T PRK14186 138 RSCTPAGVMRL----LRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANAT-VTIAHS 190 (297)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEeCC
Confidence 46898887755 45668999999999999 678999999999999999 566665
No 57
>PLN02494 adenosylhomocysteinase
Probab=95.76 E-value=0.049 Score=60.78 Aligned_cols=116 Identities=11% Similarity=0.089 Sum_probs=70.9
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhc
Q 008128 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ 473 (577)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~ 473 (577)
-||.++ ++.+++..+..+.|++|+|.|+|.+|+.+|+.+...|++|+ +.|. ||. +. .+.+. .
T Consensus 235 GtgqS~---~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VI-V~e~-----dp~-----r~---~eA~~-~ 296 (477)
T PLN02494 235 GCRHSL---PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVI-VTEI-----DPI-----CA---LQALM-E 296 (477)
T ss_pred cccccH---HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeC-----Cch-----hh---HHHHh-c
Confidence 455555 44455556778999999999999999999999999999955 4554 221 11 01100 0
Q ss_pred CcccccccccCCceEeCCCCccccccceeecCCcc-cccchhhHhhhhccCceEEEecC-CCCCCHHHH
Q 008128 474 RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQ-NEIDQSDAINLVNSGCRILVEGS-NMPCTPEAV 540 (577)
Q Consensus 474 g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~~-n~It~enA~~l~~~~akiVvEgA-N~p~T~eA~ 540 (577)
+...++-++.+ ..+||++-|+.. +.|+.+.-..+ +.++.+|-=|- +..+..++.
T Consensus 297 -----------G~~vv~leEal-~~ADVVI~tTGt~~vI~~e~L~~M-K~GAiLiNvGr~~~eID~~aL 352 (477)
T PLN02494 297 -----------GYQVLTLEDVV-SEADIFVTTTGNKDIIMVDHMRKM-KNNAIVCNIGHFDNEIDMLGL 352 (477)
T ss_pred -----------CCeeccHHHHH-hhCCEEEECCCCccchHHHHHhcC-CCCCEEEEcCCCCCccCHHHH
Confidence 11111111222 368999987653 55677766665 55676665554 445655553
No 58
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.75 E-value=0.052 Score=57.00 Aligned_cols=52 Identities=19% Similarity=0.299 Sum_probs=44.8
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEecch-HHHHHHHHHHHCCCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGN-VG~~aA~~L~e~GAkVVaISDs 448 (577)
..+|..||+..+ ++.+.+++|++|+|.|-++ ||.-+|.+|...||+ |+++++
T Consensus 144 ~PcTp~av~~ll----~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~at-Vtv~hs 196 (287)
T PRK14176 144 VPCTPHGVIRAL----EEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNAT-VSVCHV 196 (287)
T ss_pred CCCcHHHHHHHH----HHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCE-EEEEec
Confidence 478998887655 5568899999999999888 999999999999998 677776
No 59
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.73 E-value=0.26 Score=51.76 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=43.9
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
..+|..||+..+ ++.+.+++||+|+|.| +..||.-++.+|.+.+|+ |+++.+
T Consensus 137 ~PcTp~avi~ll----~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~At-Vtichs 189 (282)
T PRK14182 137 RPCTPAGVMRML----DEARVDPKGKRALVVGRSNIVGKPMAMMLLERHAT-VTIAHS 189 (282)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCC
Confidence 478988887655 5568899999999999 678999999999999998 667766
No 60
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=95.70 E-value=0.04 Score=56.62 Aligned_cols=110 Identities=18% Similarity=0.213 Sum_probs=68.6
Q ss_pred ceEEEEecchHHHHHHHHHHHC--CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEe-CCCC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAY--GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DEAK 493 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~--GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i-~~~e 493 (577)
+||.|.|+|++|+..++.|.+. +..+++|+|.+ .++. .+..+.. +.... +.++
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~----------~~~a---~~~a~~~-----------~~~~~~~~~e 57 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN----------LEKA---ENLASKT-----------GAKACLSIDE 57 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC----------HHHH---HHHHHhc-----------CCeeECCHHH
Confidence 4899999999999999998875 57888898872 2222 1111111 11112 2234
Q ss_pred ccccccceeecCCcccccchhhHhhhhccCceEEEecC----CCCCCHHHHHHHHhCCcE-Eec
Q 008128 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS----NMPCTPEAVDVLKKANVL-IAP 552 (577)
Q Consensus 494 il~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgA----N~p~T~eA~~iL~~rGI~-viP 552 (577)
++ .++|+++-|+..+. ..+-+..+++.+..+|++.. +-+...+..+..+++|+. ++|
T Consensus 58 ll-~~~DvVvi~a~~~~-~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~ 119 (265)
T PRK13304 58 LV-EDVDLVVECASVNA-VEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLP 119 (265)
T ss_pred Hh-cCCCEEEEcCChHH-HHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEe
Confidence 44 58999999986544 46667777777888888642 222223334556777854 444
No 61
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=95.69 E-value=0.044 Score=58.30 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=32.6
Q ss_pred CCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEE
Q 008128 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaIS 446 (577)
+.+|.||||-|.|+|++|+.+|+.|...|.+|++..
T Consensus 137 g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d 172 (324)
T COG0111 137 GTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYD 172 (324)
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEC
Confidence 457899999999999999999999999999987653
No 62
>PRK06436 glycerate dehydrogenase; Provisional
Probab=95.69 E-value=0.11 Score=54.90 Aligned_cols=34 Identities=21% Similarity=0.094 Sum_probs=31.0
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaIS 446 (577)
+|.|+||.|.|+|++|+.+|+.|...|.+|+++.
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~ 152 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYT 152 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEC
Confidence 5899999999999999999999999999987654
No 63
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=95.66 E-value=0.062 Score=55.57 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=71.7
Q ss_pred CCCceEEEEecchHHHHHHHHHHH--CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEe-C
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIA--YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-D 490 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e--~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i-~ 490 (577)
.+.+||.|.|+|++|+..++.|.+ .+..+++|+|. ++ ++. .+..+..+. .... +
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr-----~~-----~~a---~~~a~~~g~----------~~~~~~ 60 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR-----DP-----QRH---ADFIWGLRR----------PPPVVP 60 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC-----CH-----HHH---HHHHHhcCC----------CcccCC
Confidence 345799999999999999999986 47899999887 22 222 111111111 1111 1
Q ss_pred CCCccccccceeecCCcccccchhhHhhhhccCceEEEecCCCC-CCHHHHHHHHhCCcEE-ec
Q 008128 491 EAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAVDVLKKANVLI-AP 552 (577)
Q Consensus 491 ~~eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p-~T~eA~~iL~~rGI~v-iP 552 (577)
.++++ .++|+++-|+.... ..+-+..+++.+..++++..-.. ...+..+..+++|+.+ +|
T Consensus 61 ~eell-~~~D~Vvi~tp~~~-h~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~ 122 (271)
T PRK13302 61 LDQLA-THADIVVEAAPASV-LRAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVP 122 (271)
T ss_pred HHHHh-cCCCEEEECCCcHH-HHHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEc
Confidence 23343 36899999997654 47777777788888998742211 1233345567788754 54
No 64
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=95.65 E-value=0.093 Score=55.32 Aligned_cols=34 Identities=32% Similarity=0.382 Sum_probs=31.5
Q ss_pred CCCCCceEEEEecchHHHHHHHHHHHCCCeEEEE
Q 008128 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaI 445 (577)
.+|.||||.|.|+|++|+.+|+.+...|.+|++.
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~ 174 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYY 174 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEE
Confidence 5799999999999999999999999999998765
No 65
>PRK06487 glycerate dehydrogenase; Provisional
Probab=95.62 E-value=0.08 Score=55.92 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=32.2
Q ss_pred CCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEE
Q 008128 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaIS 446 (577)
.+|.||||.|.|+|++|+.+|+.|...|.+|++..
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~ 178 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQ 178 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEEC
Confidence 46899999999999999999999999999988764
No 66
>PRK13243 glyoxylate reductase; Reviewed
Probab=95.62 E-value=0.058 Score=57.37 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=32.6
Q ss_pred CCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+.+|.|+||.|.|+|++|+.+|+.|...|.+|++ .|.
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~-~d~ 181 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILY-YSR 181 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEE-ECC
Confidence 4678999999999999999999999999999764 454
No 67
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=95.60 E-value=0.033 Score=53.19 Aligned_cols=107 Identities=17% Similarity=0.296 Sum_probs=64.3
Q ss_pred ceEEEEecchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccC-----Cce---
Q 008128 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYA-----RSK--- 487 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e-~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p-----~a~--- 487 (577)
.||.|-|||-.|+.+++.+.. ....+|+|.|. +.|++.+..|+++-...|.+....+.-. +.+
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~--------~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~ 72 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDP--------APDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIK 72 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEES--------SSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEE
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecc--------cccchhhhhhhhccccccceecccccccceeEeeccccc
Confidence 379999999999999999984 56899999887 3466676666554333344322111000 111
Q ss_pred EeCC---CC-cc-ccccceeecCCcccccchhhHhhhhccCceEEEecCC
Q 008128 488 YYDE---AK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (577)
Q Consensus 488 ~i~~---~e-il-~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (577)
.+.. ++ .| +..+|+++.|+. .-.+.+++..-++.+||-|+=+|-
T Consensus 73 ~~~~~dp~~i~W~~~gvDiVvEcTG-~f~~~~~~~~hl~~GakkViisap 121 (151)
T PF00044_consen 73 VTEERDPEEIPWGELGVDIVVECTG-KFRTRENAEAHLDAGAKKVIISAP 121 (151)
T ss_dssp EEHTSSGGGSTHHHHTESEEEETSS-STHSHHHHTHHHHTTESEEEESSS
T ss_pred chhhhhhcccccccccccEEEeccc-cceecccccccccccccceeeccc
Confidence 1111 11 35 457778887774 334556666556667776665553
No 68
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.59 E-value=0.063 Score=57.24 Aligned_cols=105 Identities=16% Similarity=0.292 Sum_probs=66.8
Q ss_pred eEEEEecchHHHHHHHHHHHCC----CeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCccccccc------ccC--C
Q 008128 418 RCVVSGSGKIAMHVLEKLIAYG----AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYA--R 485 (577)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~G----AkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~------~~p--~ 485 (577)
||+|.|||.+|+.+++.|.+.+ ..|++|.|.. +.+.+..|+++-..+|.+..-.+ .+. .
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~---------~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~ 71 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELA---------DQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDC 71 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCC---------CHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeE
Confidence 5899999999999999998764 7899998851 23344444544333333311000 000 1
Q ss_pred ceEe---CCCC-cc-ccccceeecCCcccccchhhHhhhhccCceEEEecCC
Q 008128 486 SKYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (577)
Q Consensus 486 a~~i---~~~e-il-~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (577)
.+.. ++++ .| +..+|+++.|+... .+.+.|...++.||+.|.-.|-
T Consensus 72 i~v~~~~~p~~~~w~~~gvDiVie~tG~~-~s~e~a~~~l~aGa~~V~~SaP 122 (325)
T TIGR01532 72 IRVLHSPTPEALPWRALGVDLVLDCTGVY-GNREQGERHIRAGAKRVLFSHP 122 (325)
T ss_pred EEEEEcCChhhccccccCCCEEEEccchh-ccHHHHHHHHHcCCeEEEecCC
Confidence 1122 2222 46 46899999999654 7788888888889888776653
No 69
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.57 E-value=0.087 Score=54.48 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=82.0
Q ss_pred chHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCe----------EEEEEcCCCeeeCCCC-CCHHhH
Q 008128 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI----------PVSVSDAKGYLVDEDG-FDYMKI 463 (577)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAk----------VVaISDs~G~Iydp~G-LD~e~L 463 (577)
||-=+..++-.+++-.+.+|+..||+|.|.|..|..+|+.|.+.+.+ =+-+.|++|-|++... ++..+.
T Consensus 4 TaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~ 83 (254)
T cd00762 4 TASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEY 83 (254)
T ss_pred hHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHH
Confidence 55555667778888889999999999999999999999999987654 5789999999998764 443221
Q ss_pred hHHHHHHhhcCcccccccccCCceEeCCCCcc-ccccceeecCCc-ccccchhhHhhhhcc-CceEEEecCC
Q 008128 464 SFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW-NERCDVAFPCAS-QNEIDQSDAINLVNS-GCRILVEGSN 532 (577)
Q Consensus 464 ~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil-~~~cDIlIPcA~-~n~It~enA~~l~~~-~akiVvEgAN 532 (577)
. +.++.+.. ....+-.+.. .++.||||=++. .+.+|++-.+.+.++ .=.||---+|
T Consensus 84 ~-~~~~~~~~------------~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSN 142 (254)
T cd00762 84 H-LARFANPE------------RESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSN 142 (254)
T ss_pred H-HHHHcCcc------------cccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCC
Confidence 1 11111100 0000111122 357788888777 788888888777421 2345555565
No 70
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.50 E-value=0.15 Score=53.51 Aligned_cols=125 Identities=14% Similarity=0.110 Sum_probs=85.2
Q ss_pred chHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHC----CC------eEEEEEcCCCeeeCCCC-CCHHhH
Q 008128 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY----GA------IPVSVSDAKGYLVDEDG-FDYMKI 463 (577)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~----GA------kVVaISDs~G~Iydp~G-LD~e~L 463 (577)
||-=+..++-.+++-.+.+|+..||+|.|.|.-|..+|+.|.+. |. +-+-+.|++|-|++... ++..+.
T Consensus 4 Ta~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~ 83 (279)
T cd05312 4 TAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKK 83 (279)
T ss_pred HHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHH
Confidence 55555667788888889999999999999999999999999876 87 56789999999998654 433222
Q ss_pred hHHHHHHhhcCcccccccccCCceEeCCCCcc-ccccceeecCCc-ccccchhhHhhhhcc-CceEEEecCCC
Q 008128 464 SFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW-NERCDVAFPCAS-QNEIDQSDAINLVNS-GCRILVEGSNM 533 (577)
Q Consensus 464 ~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil-~~~cDIlIPcA~-~n~It~enA~~l~~~-~akiVvEgAN~ 533 (577)
.+...... . ...+-.+.. .+++||||=++. .+.+|++-.+.+.++ .=.||---+|-
T Consensus 84 ----~~a~~~~~-~---------~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP 142 (279)
T cd05312 84 ----PFARKDEE-K---------EGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNP 142 (279)
T ss_pred ----HHHhhcCc-c---------cCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence 11111000 0 000111222 458899999885 689999998888431 23566666764
No 71
>PRK12861 malic enzyme; Reviewed
Probab=95.46 E-value=0.33 Score=57.23 Aligned_cols=173 Identities=17% Similarity=0.160 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHhhhcCCCcccCCCCCcCChhHHHHHHHHhhhhhCCccccccCccccccCCCCCCCcchHHHHHHHHHHH
Q 008128 328 MRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLIL 407 (577)
Q Consensus 328 er~~r~f~~eL~~~IGp~~DVpapDvGt~~~em~~i~~~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~~~~l 407 (577)
+.|. .|+..+.+-+|. |-=.|++. .+--.|-++|+..... -|+ ++--.-||-=+..++-.++
T Consensus 119 d~~v-~~v~a~~~~fg~---i~lED~~~--p~~f~il~~~~~~~~i--pvf----------~DD~qGTa~v~lA~llnal 180 (764)
T PRK12861 119 DKLV-DIIAGLEPTFGG---INLEDIKA--PECFTVERKLRERMKI--PVF----------HDDQHGTAITVSAAFINGL 180 (764)
T ss_pred HHHH-HHHHHHHhhcCC---ceeeeccC--chHHHHHHHHHhcCCC--Cee----------ccccchHHHHHHHHHHHHH
Confidence 3455 777778765544 44466654 3344566777752111 111 2333456766777888888
Q ss_pred HHcCCCCCCceEEEEecchHHHHHHHHHHHCCCe--EEEEEcCCCeeeCCCC--CCHHhHhHHHHHHhhcCccccccccc
Q 008128 408 ADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDEDG--FDYMKISFLRDIKSQQRSLRDYSKTY 483 (577)
Q Consensus 408 ~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAk--VVaISDs~G~Iydp~G--LD~e~L~~l~~~k~~~g~l~~y~~~~ 483 (577)
+-.+.+++..||++.|.|.-|..+++.|.+.|.+ =+.+.|++|.|+.... ++..+.. +.... ...
T Consensus 181 ~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~----~a~~~-~~~------ 249 (764)
T PRK12861 181 KVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKER----FAQET-DAR------ 249 (764)
T ss_pred HHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHH----HHhhc-CCC------
Confidence 8889999999999999999999999999999984 3689999999997552 5543321 11110 000
Q ss_pred CCceEeCCCCccccccceeecCCcccccchhhHhhhhccCceEEEecCCCC--CCHH
Q 008128 484 ARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP--CTPE 538 (577)
Q Consensus 484 p~a~~i~~~eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p--~T~e 538 (577)
+-.+.+. .+||||=++..+.+|++-.+.+.+ =.||---||-- +|||
T Consensus 250 ------~L~eai~-~advliG~S~~g~ft~e~v~~Ma~--~PIIFaLsNPtpE~~pe 297 (764)
T PRK12861 250 ------TLAEVIG-GADVFLGLSAGGVLKAEMLKAMAA--RPLILALANPTPEIFPE 297 (764)
T ss_pred ------CHHHHHh-cCCEEEEcCCCCCCCHHHHHHhcc--CCEEEECCCCCccCCHH
Confidence 0011122 369999999999999999999943 45777777743 4554
No 72
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.46 E-value=0.35 Score=51.14 Aligned_cols=52 Identities=25% Similarity=0.275 Sum_probs=43.2
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHC----CCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAY----GAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~----GAkVVaISDs 448 (577)
..+|..|++..+ ++.+.+++||+|+|.| +..||.-+|.+|.+. +|+ |+++.+
T Consensus 137 ~PcTp~avi~lL----~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aT-Vtvchs 193 (297)
T PRK14167 137 KPCTPHGIQKLL----AAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNAT-VTVCHS 193 (297)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCE-EEEeCC
Confidence 478988887654 5568899999999999 678999999999987 787 677766
No 73
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.44 E-value=0.085 Score=55.35 Aligned_cols=95 Identities=20% Similarity=0.254 Sum_probs=67.6
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHH
Q 008128 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDI 469 (577)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~ 469 (577)
-..+|..|++..+ ++.+.+++||+|+|.| +..||.-++.+|.+.||+ |+++++.- + |+.+
T Consensus 138 ~~PcTp~avi~ll----~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~at-Vt~chs~T----~---~l~~------- 198 (284)
T PRK14177 138 YLPCTPYGMVLLL----KEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNAT-VTLCHSKT----Q---NLPS------- 198 (284)
T ss_pred CCCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCCCC----C---CHHH-------
Confidence 3478999988754 4568999999999999 788999999999999998 67887621 0 1111
Q ss_pred HhhcCcccccccccCCceEeCCCCccccccceeecCCc-ccccchhhHhhhhccCceEEEecCCC
Q 008128 470 KSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGSNM 533 (577)
Q Consensus 470 k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~-~n~It~enA~~l~~~~akiVvEgAN~ 533 (577)
+ ...+||+|-|.. .+.|+.+..+ .+|-+|==|-|-
T Consensus 199 ---------~----------------~~~ADIvIsAvGk~~~i~~~~ik----~gavVIDvGin~ 234 (284)
T PRK14177 199 ---------I----------------VRQADIIVGAVGKPEFIKADWIS----EGAVLLDAGYNP 234 (284)
T ss_pred ---------H----------------HhhCCEEEEeCCCcCccCHHHcC----CCCEEEEecCcc
Confidence 0 236788887766 4667665443 477666666664
No 74
>PRK13529 malate dehydrogenase; Provisional
Probab=95.40 E-value=0.51 Score=53.82 Aligned_cols=186 Identities=17% Similarity=0.193 Sum_probs=118.6
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCCcccCCCCCcCChhHHHHHHHHhhhhhCCccccccCccccccCCCCCCCcchHHHHHH
Q 008128 323 SDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFF 402 (577)
Q Consensus 323 s~~Eler~~r~f~~eL~~~IGp~~DVpapDvGt~~~em~~i~~~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~ 402 (577)
+..|-..|...||..+.+.. |..-|==.|++.. .--.|.+.|+.-. -++ .+--.-||-=+..+
T Consensus 219 ~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~--~af~iL~ryr~~i----~~F----------nDDiQGTaaV~LAg 281 (563)
T PRK13529 219 RGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQK--NARRILERYRDEI----CTF----------NDDIQGTGAVTLAG 281 (563)
T ss_pred chHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCc--hHHHHHHHhccCC----Cee----------ccccchHHHHHHHH
Confidence 45678888999999888654 5544555666542 2334566676421 112 12234577677778
Q ss_pred HHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHH----CCC------eEEEEEcCCCeeeCCCC-CCHHhHhHHHHHHh
Q 008128 403 AQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA----YGA------IPVSVSDAKGYLVDEDG-FDYMKISFLRDIKS 471 (577)
Q Consensus 403 ~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e----~GA------kVVaISDs~G~Iydp~G-LD~e~L~~l~~~k~ 471 (577)
+-.+++-.|.+|+..||++.|.|..|..+|+.|.+ .|. +-+-+.|++|-|++..+ ++..+. .+..
T Consensus 282 ll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~----~fa~ 357 (563)
T PRK13529 282 LLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQK----PYAR 357 (563)
T ss_pred HHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHH----HHhh
Confidence 88888888999999999999999999999999986 687 45789999999998764 332221 1111
Q ss_pred hcCcccccccccCCc-eEeCCCCcc-ccccceeecCCc-ccccchhhHhhhhcc-CceEEEecCCC
Q 008128 472 QQRSLRDYSKTYARS-KYYDEAKPW-NERCDVAFPCAS-QNEIDQSDAINLVNS-GCRILVEGSNM 533 (577)
Q Consensus 472 ~~g~l~~y~~~~p~a-~~i~~~eil-~~~cDIlIPcA~-~n~It~enA~~l~~~-~akiVvEgAN~ 533 (577)
....+..+ +.. ...+-.++. .++.||||=++. .+.+|++-.+.+.++ .=.||---+|-
T Consensus 358 ~~~~~~~~----~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 419 (563)
T PRK13529 358 KREELADW----DTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNP 419 (563)
T ss_pred hccccccc----ccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence 11111111 000 000001222 467799999988 699999999988542 23566666764
No 75
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.34 E-value=0.027 Score=54.26 Aligned_cols=111 Identities=17% Similarity=0.228 Sum_probs=64.7
Q ss_pred cCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEe
Q 008128 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY 489 (577)
Q Consensus 410 ~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i 489 (577)
.+.++.|+||.|.|+|++|+.+|+.|...|++|++..-+ .-+.+ .... .+.++.
T Consensus 30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~--------~~~~~------~~~~------------~~~~~~ 83 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRS--------PKPEE------GADE------------FGVEYV 83 (178)
T ss_dssp TBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESS--------CHHHH------HHHH------------TTEEES
T ss_pred CccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEeccc--------CChhh------hccc------------ccceee
Confidence 357899999999999999999999999999997765433 21100 0000 011222
Q ss_pred CCCCccccccceeecCCc-----ccccchhhHhhhhccCceEEEecCCCCC-CHHH-HHHHHhCCcE
Q 008128 490 DEAKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMPC-TPEA-VDVLKKANVL 549 (577)
Q Consensus 490 ~~~eil~~~cDIlIPcA~-----~n~It~enA~~l~~~~akiVvEgAN~p~-T~eA-~~iL~~rGI~ 549 (577)
+-++++ ..|||++-+.. .+.|+.+.-.++ +.++ +++--|-+.+ ..+| .+.|++.-|.
T Consensus 84 ~l~ell-~~aDiv~~~~plt~~T~~li~~~~l~~m-k~ga-~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 84 SLDELL-AQADIVSLHLPLTPETRGLINAEFLAKM-KPGA-VLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp SHHHHH-HH-SEEEE-SSSSTTTTTSBSHHHHHTS-TTTE-EEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred ehhhhc-chhhhhhhhhccccccceeeeeeeeecc-ccce-EEEeccchhhhhhhHHHHHHhhccCc
Confidence 112222 35888776655 566777776666 3345 5666777774 4444 3666665443
No 76
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=95.34 E-value=0.53 Score=53.63 Aligned_cols=183 Identities=16% Similarity=0.155 Sum_probs=118.0
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCCcccCCCCCcCChhHHHHHHHHhhhhhCCccccccCccccccCCCCCCCcchHHHHHH
Q 008128 323 SDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFF 402 (577)
Q Consensus 323 s~~Eler~~r~f~~eL~~~IGp~~DVpapDvGt~~~em~~i~~~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~ 402 (577)
+.+|-..|...||....+.. |..-|==.|++.. .---+.+.|+.-.. ++ .+--.-||-=+..+
T Consensus 221 ~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~--naf~iL~kyr~~i~----~F----------nDDiQGTaaV~lAg 283 (559)
T PTZ00317 221 DDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNN--HCFDLLERYQNKYR----CF----------NDDIQGTGAVIAAG 283 (559)
T ss_pred ChhhHHHHHHHHHHHHHHhC-CCeEEehhhcCCc--cHHHHHHHhccCCC----Ee----------cccchhHHHHHHHH
Confidence 56788889999999998664 5555555666543 22345677764211 11 12234566666778
Q ss_pred HHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHH----CCC------eEEEEEcCCCeeeCCCC--CCHHhHhHHHHHH
Q 008128 403 AQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA----YGA------IPVSVSDAKGYLVDEDG--FDYMKISFLRDIK 470 (577)
Q Consensus 403 ~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e----~GA------kVVaISDs~G~Iydp~G--LD~e~L~~l~~~k 470 (577)
+-.+++-.+.+|+..||++.|.|..|..+|+.|.+ .|. +-+-+.|++|-|++..+ ++..+. .+.
T Consensus 284 ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~----~fa 359 (559)
T PTZ00317 284 FLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKV----PFA 359 (559)
T ss_pred HHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHH----HHh
Confidence 88888888999999999999999999999998874 687 55789999999998754 443332 111
Q ss_pred hhcCcccccccccCCceEeCCCCc-cccccceeecCCc-ccccchhhHhhhhcc-CceEEEecCCC
Q 008128 471 SQQRSLRDYSKTYARSKYYDEAKP-WNERCDVAFPCAS-QNEIDQSDAINLVNS-GCRILVEGSNM 533 (577)
Q Consensus 471 ~~~g~l~~y~~~~p~a~~i~~~ei-l~~~cDIlIPcA~-~n~It~enA~~l~~~-~akiVvEgAN~ 533 (577)
..... .++....+-.++ -.++.||||=++. .+.+|++..+.+.++ .=.||---+|-
T Consensus 360 ~~~~~-------~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNP 418 (559)
T PTZ00317 360 RTDIS-------AEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNP 418 (559)
T ss_pred ccccc-------cccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 10000 000000010111 1457799999887 589999988888531 23566666664
No 77
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.33 E-value=0.4 Score=49.17 Aligned_cols=133 Identities=17% Similarity=0.112 Sum_probs=78.7
Q ss_pred chHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcC
Q 008128 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (577)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g 474 (577)
-++|.+.++++ .+...+++++.|.|.|.+|+.++..|.+.|++ |.|.+. +.+++..+.+.....+
T Consensus 100 D~~G~~~~l~~----~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~-v~v~~R----------~~~~~~~la~~~~~~~ 164 (270)
T TIGR00507 100 DGIGLVSDLER----LIPLRPNQRVLIIGAGGAARAVALPLLKADCN-VIIANR----------TVSKAEELAERFQRYG 164 (270)
T ss_pred CHHHHHHHHHh----cCCCccCCEEEEEcCcHHHHHHHHHHHHCCCE-EEEEeC----------CHHHHHHHHHHHhhcC
Confidence 46777776553 34567789999999999999999999999986 556665 2233322222211111
Q ss_pred cccccccccCCceEeCCCCccccccceeecCCcccc---cchh--hHhhhhccCceEEEecCCCCCCHHHHHHHHhCCcE
Q 008128 475 SLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNE---IDQS--DAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVL 549 (577)
Q Consensus 475 ~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~~n~---It~e--nA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI~ 549 (577)
. ....+.++....++||+|-|+.-.. +... ....+ + .-++|++-.-.|....-.+..+++|+.
T Consensus 165 ~----------~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l-~-~~~~v~D~~y~p~~T~ll~~A~~~G~~ 232 (270)
T TIGR00507 165 E----------IQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEKL-K-EGMVVYDMVYNPGETPFLAEAKSLGTK 232 (270)
T ss_pred c----------eEEechhhhcccCccEEEECCCCCCCCCCCCCCCCHHHc-C-CCCEEEEeccCCCCCHHHHHHHHCCCe
Confidence 1 1111211222246999999887532 2110 11222 2 234888887777422455667888988
Q ss_pred Eecch
Q 008128 550 IAPAM 554 (577)
Q Consensus 550 viPD~ 554 (577)
++.+.
T Consensus 233 ~vdG~ 237 (270)
T TIGR00507 233 TIDGL 237 (270)
T ss_pred eeCCH
Confidence 77654
No 78
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=95.26 E-value=0.036 Score=60.19 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEE
Q 008128 402 FAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 402 ~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaI 445 (577)
.+-.+.+..+.++.|+||.|.|+||||+.+|+.|...|.+|++.
T Consensus 102 ~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~ 145 (378)
T PRK15438 102 SLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLC 145 (378)
T ss_pred HHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEE
Confidence 33344455678999999999999999999999999999998765
No 79
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.24 E-value=0.25 Score=52.11 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=43.9
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
-..+|..||+..++ +.+.+++||+|+|.| .|.||..+|..|.+.|+.| ++++
T Consensus 137 ~~PcTp~ai~~ll~----~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tV-tv~~ 189 (296)
T PRK14188 137 LVPCTPLGCMMLLR----RVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATV-TIAH 189 (296)
T ss_pred CcCCCHHHHHHHHH----HhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEE-EEEC
Confidence 35789888876554 567899999999999 9999999999999999995 5554
No 80
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.21 E-value=0.062 Score=52.02 Aligned_cols=54 Identities=33% Similarity=0.281 Sum_probs=46.4
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCceEEEEec-chHHHHHHHHHHHCCCeEEEEEcC
Q 008128 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaISDs 448 (577)
-|++-.+..++..++..+.++++++++|.|. |.+|+.+++.|.+.|++|+.+ +.
T Consensus 6 ~ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~-~R 60 (194)
T cd01078 6 TTAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLV-GR 60 (194)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE-cC
Confidence 4777888888888988899999999999995 999999999999999886544 44
No 81
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.20 E-value=0.54 Score=49.56 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=43.2
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHC----CCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAY----GAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~----GAkVVaISDs 448 (577)
...|..||+..+ ++.+.+++||+|+|.| +..||.-++.+|.+. +|. |+++.+
T Consensus 133 ~PcTp~avi~lL----~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~At-Vtvchs 189 (287)
T PRK14181 133 IPCTPAGIIELL----KYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNAT-VTLLHS 189 (287)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCE-EEEeCC
Confidence 478998887665 5568999999999999 678999999999998 777 567765
No 82
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.15 E-value=0.13 Score=55.24 Aligned_cols=103 Identities=14% Similarity=0.102 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCccc
Q 008128 398 GLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLR 477 (577)
Q Consensus 398 GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~ 477 (577)
.+.+++..+++.. .++++++|.|.|.|.+|.-+|+.|.+.|++-|.|+..+-.. ++.+.+
T Consensus 157 Sv~s~av~~~~~~-~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-----~~~~~~-------------- 216 (338)
T PRK00676 157 TIESVVQQELRRR-QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-----LPYRTV-------------- 216 (338)
T ss_pred CHHHHHHHHHHHh-CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-----cchhhh--------------
Confidence 3445455555555 57999999999999999999999999998778898875411 111110
Q ss_pred ccccccCCceEeCCCCccccccceeecC-----CcccccchhhHhhhhccCceEEEecCCCC
Q 008128 478 DYSKTYARSKYYDEAKPWNERCDVAFPC-----ASQNEIDQSDAINLVNSGCRILVEGSNMP 534 (577)
Q Consensus 478 ~y~~~~p~a~~i~~~eil~~~cDIlIPc-----A~~n~It~enA~~l~~~~akiVvEgAN~p 534 (577)
+ .+.+ -+..++||+|-| +....|+.+..+.+ .-++++.=|+-.
T Consensus 217 ------~-~~~~----~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~---~~r~~iDLAvPR 264 (338)
T PRK00676 217 ------V-REEL----SFQDPYDVIFFGSSESAYAFPHLSWESLADI---PDRIVFDFNVPR 264 (338)
T ss_pred ------h-hhhh----hcccCCCEEEEcCCcCCCCCceeeHHHHhhc---cCcEEEEecCCC
Confidence 0 0000 012477999954 55677887766554 336888887644
No 83
>PLN03139 formate dehydrogenase; Provisional
Probab=95.11 E-value=0.1 Score=56.88 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=32.7
Q ss_pred CCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+.+|.|+||.|.|+|++|+.+|+.|...|.+|++ .|.
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~-~d~ 230 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY-HDR 230 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEE-ECC
Confidence 4579999999999999999999999999999765 444
No 84
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.09 E-value=0.16 Score=53.60 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=31.6
Q ss_pred CCCCCceEEEEecchHHHHHHHHHHHCCCeEEEE
Q 008128 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaI 445 (577)
.+|.|+||.|.|+|++|+.+|+.|...|.+|++.
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~ 176 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYA 176 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEE
Confidence 4689999999999999999999999999998875
No 85
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.05 E-value=0.64 Score=49.12 Aligned_cols=52 Identities=23% Similarity=0.356 Sum_probs=43.0
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHC----CCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAY----GAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~----GAkVVaISDs 448 (577)
..+|..||+..+ ++.+.+++||+|+|.| +.-||.-++.+|.+. +|+ |+++.+
T Consensus 137 ~PcTp~av~~lL----~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aT-Vtvchs 193 (293)
T PRK14185 137 VSATPNGILELL----KRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCT-VTVCHS 193 (293)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCE-EEEecC
Confidence 478988887654 5668899999999999 678999999999988 577 667765
No 86
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.04 E-value=0.52 Score=48.66 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=80.1
Q ss_pred chHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcC
Q 008128 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (577)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g 474 (577)
.+.|.+.++++ ..+.++++++|+|.|.|.+|+.++..|.+.|.+-|.|.+.+ .+++..+.+. ..
T Consensus 105 D~~G~~~~l~~---~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~----------~~~a~~l~~~---~~ 168 (278)
T PRK00258 105 DGIGFVRALEE---RLGVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT----------VERAEELAKL---FG 168 (278)
T ss_pred cHHHHHHHHHh---ccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC----------HHHHHHHHHH---hh
Confidence 45666665542 24668999999999999999999999999995447777762 2333222221 11
Q ss_pred cccccccccCCceE-eCCCCccccccceeecCCcccccc-----hhhHhhhhccCceEEEecCCCCCCHHHHHHHHhCCc
Q 008128 475 SLRDYSKTYARSKY-YDEAKPWNERCDVAFPCASQNEID-----QSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANV 548 (577)
Q Consensus 475 ~l~~y~~~~p~a~~-i~~~eil~~~cDIlIPcA~~n~It-----~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI 548 (577)
.. ....+ .+..+. -.++||+|=|+....-. .-....| . .-.+|++-.-.|....-.+.-+++|+
T Consensus 169 ~~-------~~~~~~~~~~~~-~~~~DivInaTp~g~~~~~~~~~~~~~~l-~-~~~~v~DivY~P~~T~ll~~A~~~G~ 238 (278)
T PRK00258 169 AL-------GKAELDLELQEE-LADFDLIINATSAGMSGELPLPPLPLSLL-R-PGTIVYDMIYGPLPTPFLAWAKAQGA 238 (278)
T ss_pred hc-------cceeecccchhc-cccCCEEEECCcCCCCCCCCCCCCCHHHc-C-CCCEEEEeecCCCCCHHHHHHHHCcC
Confidence 10 00111 010111 14689999887754322 1122233 2 35788999888854344455678888
Q ss_pred EEecch
Q 008128 549 LIAPAM 554 (577)
Q Consensus 549 ~viPD~ 554 (577)
.++.+.
T Consensus 239 ~~~~G~ 244 (278)
T PRK00258 239 RTIDGL 244 (278)
T ss_pred eecCCH
Confidence 777654
No 87
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.01 E-value=0.11 Score=54.83 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=44.2
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
..+|..||+. +|++.+.+++||+|+|.| +..||.-++.+|.+.+|+ |+++.+
T Consensus 140 ~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aT-Vt~chs 192 (294)
T PRK14187 140 IPCTPKGCLY----LIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCT-VTTVHS 192 (294)
T ss_pred cCcCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCE-EEEeCC
Confidence 3789988875 455678999999999999 678999999999999999 677776
No 88
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=95.00 E-value=0.14 Score=54.98 Aligned_cols=107 Identities=16% Similarity=0.254 Sum_probs=71.6
Q ss_pred ceEEEEecchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccc-ccc-------ccCCc-
Q 008128 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRD-YSK-------TYARS- 486 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e-~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~-y~~-------~~p~a- 486 (577)
.||+|.|||.+|+..++.+.+ .+..+|+|.|... |.+.+..|+++-..+|.+.. -.. .+.+-
T Consensus 6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~--------~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~ 77 (338)
T PLN02358 6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFI--------TTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP 77 (338)
T ss_pred eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCC--------CHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEE
Confidence 599999999999999998876 4789999988632 45556566665444555432 010 01110
Q ss_pred -eEeC---CCC-cc-ccccceeecCCcccccchhhHhhhhccCceEEEecCC
Q 008128 487 -KYYD---EAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (577)
Q Consensus 487 -~~i~---~~e-il-~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (577)
+... +++ .| +..+||++.|+.. ..+.+.|...++.|||.|.=.|.
T Consensus 78 i~v~~~~~p~~~~w~~~gvDiVie~tG~-~~s~~~a~~hl~aGak~ViiSap 128 (338)
T PLN02358 78 VTVFGIRNPEDIPWGEAGADFVVESTGV-FTDKDKAAAHLKGGAKKVVISAP 128 (338)
T ss_pred EEEEEcCCcccCcccccCCCEEEEcccc-hhhHHHHHHHHHCCCEEEEeCCC
Confidence 1111 122 36 3689999999854 57888888888889988876644
No 89
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.98 E-value=0.14 Score=53.51 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=44.4
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
...|..|++.. |++.+.+++||+|+|.| +..||.-++.+|.+.||+ |+++++
T Consensus 138 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~At-Vt~chs 190 (278)
T PRK14172 138 LPCTPNSVITL----IKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENAT-VTICHS 190 (278)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEeCC
Confidence 47898888765 45568899999999999 788999999999999998 678876
No 90
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=94.92 E-value=0.052 Score=59.03 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=36.8
Q ss_pred HHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 404 QLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 404 ~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
-.+.+..+.++.|+||.|.|+||||+.+|+.|...|.+|++. |.
T Consensus 104 L~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~-Dp 147 (381)
T PRK00257 104 LTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVC-DP 147 (381)
T ss_pred HHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEE-CC
Confidence 333455678999999999999999999999999999997654 54
No 91
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.87 E-value=0.13 Score=53.72 Aligned_cols=52 Identities=25% Similarity=0.325 Sum_probs=44.2
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEecch-HHHHHHHHHHHCCCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGN-VG~~aA~~L~e~GAkVVaISDs 448 (577)
...|-+|++..++ +.+.+++|++|+|.|.|+ ||..++..|.+.|++ |+|+++
T Consensus 139 ~p~T~~gii~~L~----~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gat-Vtv~~~ 191 (283)
T PRK14192 139 GSATPAGIMRLLK----AYNIELAGKHAVVVGRSAILGKPMAMMLLNANAT-VTICHS 191 (283)
T ss_pred cCCcHHHHHHHHH----HcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCE-EEEEeC
Confidence 3677777776555 468899999999999998 999999999999995 788876
No 92
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.87 E-value=0.13 Score=53.93 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=44.2
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
..+|..||+..++ +.+.+++||+|+|.| +..||.-+|.+|.+.+|+ |+++.+
T Consensus 137 ~PcTp~avi~lL~----~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~at-Vt~chs 189 (282)
T PRK14166 137 LPCTPLGVMKLLK----AYEIDLEGKDAVIIGASNIVGRPMATMLLNAGAT-VSVCHI 189 (282)
T ss_pred cCCCHHHHHHHHH----HhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCC
Confidence 4789888876654 468899999999999 678999999999999999 567776
No 93
>PRK12862 malic enzyme; Reviewed
Probab=94.86 E-value=0.25 Score=58.25 Aligned_cols=138 Identities=20% Similarity=0.250 Sum_probs=96.2
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCe--EEEEEcCCCeeeCCC--CCCHHhHhHHH
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDED--GFDYMKISFLR 467 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAk--VVaISDs~G~Iydp~--GLD~e~L~~l~ 467 (577)
-.-||-=+..++-.+++-.|.+++..||+|.|.|.-|..+|+.|...|.+ =+.+.|++|.|+... +++..+..+..
T Consensus 169 ~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~ 248 (763)
T PRK12862 169 QHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQ 248 (763)
T ss_pred cccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhh
Confidence 34577777778888888889999999999999999999999999999983 478999999999865 35543321110
Q ss_pred HHHhhcCcccccccccCCceEeCCCCccccccceeecCCcccccchhhHhhhhccCceEEEecCCCC--CCHHHHHHHHh
Q 008128 468 DIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP--CTPEAVDVLKK 545 (577)
Q Consensus 468 ~~k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p--~T~eA~~iL~~ 545 (577)
. ...++| .+.+. .+||||=++..+.+|++-.+.+. .=.||---||-- +||| +..+-
T Consensus 249 ~--~~~~~l---------------~e~~~-~~~v~iG~s~~g~~~~~~v~~M~--~~piifalsNP~~E~~p~--~a~~~ 306 (763)
T PRK12862 249 K--TDARTL---------------AEVIE-GADVFLGLSAAGVLKPEMVKKMA--PRPLIFALANPTPEILPE--EARAV 306 (763)
T ss_pred h--cccCCH---------------HHHHc-CCCEEEEcCCCCCCCHHHHHHhc--cCCEEEeCCCCcccCCHH--HHHHh
Confidence 0 000111 12222 37999999999999999999984 345777777743 3443 33444
Q ss_pred C-CcEEe
Q 008128 546 A-NVLIA 551 (577)
Q Consensus 546 r-GI~vi 551 (577)
. |.+++
T Consensus 307 ~~~~i~a 313 (763)
T PRK12862 307 RPDAIIA 313 (763)
T ss_pred cCCEEEE
Confidence 2 34444
No 94
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=94.84 E-value=0.066 Score=55.37 Aligned_cols=126 Identities=17% Similarity=0.149 Sum_probs=80.0
Q ss_pred chHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHC----CC------eEEEEEcCCCeeeCCC-CCCHHhH
Q 008128 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY----GA------IPVSVSDAKGYLVDED-GFDYMKI 463 (577)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~----GA------kVVaISDs~G~Iydp~-GLD~e~L 463 (577)
||-=+..++-.+++-.+.+|+..||++.|.|..|..+|+.|.+. |. +=+-+.|++|-|++.. .++..+
T Consensus 4 TaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~- 82 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHK- 82 (255)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHH-
T ss_pred hHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhh-
Confidence 44445567777888889999999999999999999999999987 97 6688999999999765 222211
Q ss_pred hHHHHHHhhcCcccccccccCCceEeCCCCc-cccccceeecCC-cccccchhhHhhhhc-cCceEEEecCCC
Q 008128 464 SFLRDIKSQQRSLRDYSKTYARSKYYDEAKP-WNERCDVAFPCA-SQNEIDQSDAINLVN-SGCRILVEGSNM 533 (577)
Q Consensus 464 ~~l~~~k~~~g~l~~y~~~~p~a~~i~~~ei-l~~~cDIlIPcA-~~n~It~enA~~l~~-~~akiVvEgAN~ 533 (577)
+.+....... ..+.+-.+. -..+.||||=++ ..+.+|++-.+.+.+ +.-.||---+|-
T Consensus 83 ---~~~a~~~~~~---------~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNP 143 (255)
T PF03949_consen 83 ---KPFARKTNPE---------KDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNP 143 (255)
T ss_dssp ---HHHHBSSSTT---------T--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSS
T ss_pred ---hhhhccCccc---------ccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCC
Confidence 1111111111 111111111 246779999998 689999999999843 124578777774
No 95
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=94.81 E-value=0.16 Score=54.32 Aligned_cols=105 Identities=15% Similarity=0.225 Sum_probs=70.9
Q ss_pred ceEEEEecchHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCccccccc------ccCC--ce
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR--SK 487 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~-GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~------~~p~--a~ 487 (577)
.||.|=|||-+|+.+.+.+.+. ...||+|-|. .|.+.+..|+++-..+|.+..-+. .+.+ ..
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~---------~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~ 73 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL---------LDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIR 73 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC---------CCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEE
Confidence 4899999999999999997754 6899999774 255566666666555555432111 0111 11
Q ss_pred Ee---CCCC-cc-ccccceeecCCcccccchhhHhhhhccCceEEEecC
Q 008128 488 YY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (577)
Q Consensus 488 ~i---~~~e-il-~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (577)
.. ++++ .| +..+|+++.|+.. ..+.+.|..-++.|||.|.=.|
T Consensus 74 v~~~~dp~~~~w~~~gvDiVle~tG~-f~s~~~a~~hl~aGak~V~iSa 121 (331)
T PRK15425 74 VTAERDPANLKWDEVGVDVVAEATGL-FLTDETARKHITAGAKKVVMTG 121 (331)
T ss_pred EEEcCChhhCcccccCCCEEEEecch-hhcHHHHHHHHHCCCEEEEeCC
Confidence 12 2222 36 4689999999864 4788888888888998887654
No 96
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.81 E-value=0.66 Score=49.09 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=43.3
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHC----CCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAY----GAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~----GAkVVaISDs 448 (577)
..+|..||+..++ +.+.+++||+|+|.| +..||.-+|.+|.+. +|+ |+++.+
T Consensus 141 ~PcTp~avi~lL~----~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~at-Vtv~hs 197 (297)
T PRK14168 141 LPCTPAGIQEMLV----RSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANAT-VTIVHT 197 (297)
T ss_pred cCCCHHHHHHHHH----HhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCE-EEEecC
Confidence 4789888876655 568999999999999 788999999999988 677 667765
No 97
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.79 E-value=0.073 Score=55.90 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=44.5
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEecch-HHHHHHHHHHHCCCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGN-VG~~aA~~L~e~GAkVVaISDs 448 (577)
..+|..|++..+ ++.+.+++|++|+|.|.|+ ||..+|..|.+.|++ |+++++
T Consensus 138 ~PcTp~ai~~ll----~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gat-Vtv~~s 190 (286)
T PRK14175 138 VPCTPLGIMEIL----KHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNAS-VTILHS 190 (286)
T ss_pred CCCcHHHHHHHH----HHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCe-EEEEeC
Confidence 478988887655 4568899999999999988 999999999999999 567766
No 98
>PRK07574 formate dehydrogenase; Provisional
Probab=94.78 E-value=0.15 Score=55.68 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=30.8
Q ss_pred CCCCCceEEEEecchHHHHHHHHHHHCCCeEEEE
Q 008128 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaI 445 (577)
.+|.|+||.|.|+|++|+.+|+.|...|.+|++.
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~ 221 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYT 221 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 4689999999999999999999999999997653
No 99
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=94.73 E-value=0.15 Score=55.08 Aligned_cols=115 Identities=18% Similarity=0.240 Sum_probs=73.1
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhc
Q 008128 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ 473 (577)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~ 473 (577)
-||.+.+-++..+ .+.-+.||.++|.|+|.||+..|..|...||+ |.|.+. || +.+| ...
T Consensus 190 GtgqS~~DgI~Ra---Tn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~-ViVtEv-----DP----I~Al---eA~---- 249 (420)
T COG0499 190 GTGQSLLDGILRA---TNVLLAGKNVVVAGYGWVGRGIAMRLRGMGAR-VIVTEV-----DP----IRAL---EAA---- 249 (420)
T ss_pred ccchhHHHHHHhh---hceeecCceEEEecccccchHHHHHhhcCCCe-EEEEec-----Cc----hHHH---HHh----
Confidence 3666666555444 35668999999999999999999999999999 557775 43 1222 111
Q ss_pred CcccccccccCCceEeCCCCccccccceeecCCc-ccccchhhHhhhhccCceEEEec--CCCCCCHHHH
Q 008128 474 RSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEG--SNMPCTPEAV 540 (577)
Q Consensus 474 g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~-~n~It~enA~~l~~~~akiVvEg--AN~p~T~eA~ 540 (577)
..+| +...-++. ....||||-|+. .++|+.+....+. .+| ||+-. .|+-+..++.
T Consensus 250 --MdGf-------~V~~m~~A-a~~gDifiT~TGnkdVi~~eh~~~Mk-Dga-Il~N~GHFd~EI~~~~L 307 (420)
T COG0499 250 --MDGF-------RVMTMEEA-AKTGDIFVTATGNKDVIRKEHFEKMK-DGA-ILANAGHFDVEIDVAGL 307 (420)
T ss_pred --hcCc-------EEEEhHHh-hhcCCEEEEccCCcCccCHHHHHhcc-CCe-EEecccccceeccHHHH
Confidence 1122 22211111 235699999987 6999999998873 344 44332 3444555553
No 100
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.71 E-value=0.18 Score=52.96 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=44.6
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
-..+|..||+..+ ++.+.+++||+|+|.| +..||.-++.+|.+.||+ |+++.+
T Consensus 134 ~~PcTp~avi~lL----~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aT-Vtichs 187 (287)
T PRK14173 134 LEPCTPAGVVRLL----KHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDAT-VTLAHS 187 (287)
T ss_pred CCCCCHHHHHHHH----HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEeCC
Confidence 3578998887655 4668999999999999 788999999999999998 567765
No 101
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.67 E-value=0.11 Score=56.67 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=77.9
Q ss_pred ceEEEEecchHHHHHHHHHHHCC-CeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCC---
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYG-AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA--- 492 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~G-AkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~--- 492 (577)
++|+|.|.|+||+.+|.+|.+.| .. |.|+|. +.++++++.... .+.++ +..++-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~-V~iAdR----------s~~~~~~i~~~~--~~~v~--------~~~vD~~d~~ 60 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGE-VTIADR----------SKEKCARIAELI--GGKVE--------ALQVDAADVD 60 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCce-EEEEeC----------CHHHHHHHHhhc--cccce--------eEEecccChH
Confidence 58999999999999999999999 56 678887 233443332221 11121 1112211
Q ss_pred Cc--cccccceeecCCcccccchhhHhhhhccCceEEEecCCCC-CCHHHHHHHHhCCcEEecchhccccceeehhh
Q 008128 493 KP--WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAVDVLKKANVLIAPAMAAGAGGVRYSIF 566 (577)
Q Consensus 493 ei--l~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p-~T~eA~~iL~~rGI~viPD~~aNAGGVivS~~ 566 (577)
.+ +-.+.|++|-|+++.. +..-++..++.|..+|- -+|.. ..-+-++..+++||.++|+. --+=|++..+.
T Consensus 61 al~~li~~~d~VIn~~p~~~-~~~i~ka~i~~gv~yvD-ts~~~~~~~~~~~~a~~Agit~v~~~-G~dPGi~nv~a 134 (389)
T COG1748 61 ALVALIKDFDLVINAAPPFV-DLTILKACIKTGVDYVD-TSYYEEPPWKLDEEAKKAGITAVLGC-GFDPGITNVLA 134 (389)
T ss_pred HHHHHHhcCCEEEEeCCchh-hHHHHHHHHHhCCCEEE-cccCCchhhhhhHHHHHcCeEEEccc-CcCcchHHHHH
Confidence 11 1224599999987643 45556666677877754 45544 43455688899999999975 33334544443
No 102
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.64 E-value=0.41 Score=50.36 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=44.2
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCceEEEEec-chHHHHHHHHHHHCCCeEEEEEcC
Q 008128 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaISDs 448 (577)
-..+|..||+..+ ++.+.+++||+|+|.|- |.||.-+|..|.+.|+.| +++.+
T Consensus 137 ~~PcTp~avi~lL----~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatV-tv~~s 190 (284)
T PRK14179 137 MIPCTPAGIMEMF----REYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATV-TLTHS 190 (284)
T ss_pred CcCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEE-EEECC
Confidence 3578999987654 45689999999999997 999999999999999995 55543
No 103
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.60 E-value=0.68 Score=48.12 Aligned_cols=136 Identities=18% Similarity=0.225 Sum_probs=80.2
Q ss_pred chHHHHHHHHHHHHHcC--CCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhh
Q 008128 395 TGYGLVFFAQLILADMN--KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ 472 (577)
Q Consensus 395 TG~GV~~~~~~~l~~~g--~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~ 472 (577)
-++|.+.+++. .+ .++++++|+|.|.|.+|+.++..|.+.|++-|.|.+. +.++...|.+....
T Consensus 106 D~~G~~~~l~~----~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nR----------t~~ka~~La~~~~~ 171 (282)
T TIGR01809 106 DWDGIAGALAN----IGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINR----------NPDKLSRLVDLGVQ 171 (282)
T ss_pred CHHHHHHHHHh----hCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeC----------CHHHHHHHHHHhhh
Confidence 36777777653 34 2588999999999999999999999999877888876 23343333332111
Q ss_pred cCcccccccccCCceEeCC-CCc--cccccceeecCCccc-ccchhhHhh----hh---ccCceEEEecCCCCCCHHHHH
Q 008128 473 QRSLRDYSKTYARSKYYDE-AKP--WNERCDVAFPCASQN-EIDQSDAIN----LV---NSGCRILVEGSNMPCTPEAVD 541 (577)
Q Consensus 473 ~g~l~~y~~~~p~a~~i~~-~ei--l~~~cDIlIPcA~~n-~It~enA~~----l~---~~~akiVvEgAN~p~T~eA~~ 541 (577)
...+. .++. +++ .-.++||+|=|+.-+ .++.+.... +. ..+..+|.+..-.|....-.+
T Consensus 172 ~~~~~----------~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T~ll~ 241 (282)
T TIGR01809 172 VGVIT----------RLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPTPLVA 241 (282)
T ss_pred cCcce----------eccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCCHHHH
Confidence 11111 1111 111 114689999887643 343332211 00 013467888888884333444
Q ss_pred HHHhCCcEEecch
Q 008128 542 VLKKANVLIAPAM 554 (577)
Q Consensus 542 iL~~rGI~viPD~ 554 (577)
.-+++|..++.+.
T Consensus 242 ~A~~~G~~~~~Gl 254 (282)
T TIGR01809 242 IVSAAGWRVISGL 254 (282)
T ss_pred HHHHCCCEEECcH
Confidence 4567887776543
No 104
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.58 E-value=0.04 Score=48.66 Aligned_cols=37 Identities=32% Similarity=0.436 Sum_probs=31.0
Q ss_pred CCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
.+++|++|+|.|.|+||..-++.|.+.||+|+-||..
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3689999999999999999999999999998777765
No 105
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=94.57 E-value=0.26 Score=51.73 Aligned_cols=111 Identities=15% Similarity=0.227 Sum_probs=66.0
Q ss_pred HHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccc
Q 008128 403 AQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKT 482 (577)
Q Consensus 403 ~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~ 482 (577)
++.+....+ ++.|++|+|.|.|.+|..+++.|...|++.|.|+|. +.++. .++.+..+.
T Consensus 166 v~~a~~~~~-~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r----------~~~ra---~~la~~~g~------- 224 (311)
T cd05213 166 VELAEKIFG-NLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANR----------TYERA---EELAKELGG------- 224 (311)
T ss_pred HHHHHHHhC-CccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeC----------CHHHH---HHHHHHcCC-------
Confidence 443333333 489999999999999999999999988877888886 22232 122222111
Q ss_pred cCCceEeCCCCcc--ccccceeecCCcccccchhhHhhhhcc---CceEEEecCCCC-CCHHH
Q 008128 483 YARSKYYDEAKPW--NERCDVAFPCASQNEIDQSDAINLVNS---GCRILVEGSNMP-CTPEA 539 (577)
Q Consensus 483 ~p~a~~i~~~eil--~~~cDIlIPcA~~n~It~enA~~l~~~---~akiVvEgAN~p-~T~eA 539 (577)
..++.+++. -.++||+|-|+..... .+....+.+. +-++|+.-||-. +.|+.
T Consensus 225 ----~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~~~~~~~~~~~~~~viDlavPrdi~~~v 282 (311)
T cd05213 225 ----NAVPLDELLELLNEADVVISATGAPHY-AKIVERAMKKRSGKPRLIVDLAVPRDIEPEV 282 (311)
T ss_pred ----eEEeHHHHHHHHhcCCEEEECCCCCch-HHHHHHHHhhCCCCCeEEEEeCCCCCCchhh
Confidence 111111111 2368999999886655 2222222211 346899999744 55543
No 106
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=94.56 E-value=0.17 Score=54.30 Aligned_cols=106 Identities=19% Similarity=0.292 Sum_probs=71.2
Q ss_pred ceEEEEecchHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccC-----CceE--
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYA-----RSKY-- 488 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~-GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p-----~a~~-- 488 (577)
.||+|=|||-+|+.+.+.+.+. ...||+|-|.. .|.+.+..|+++-..+|.+..-+..-. +.+.
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~--------~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~ 74 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDPF--------MTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVH 74 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCC--------CChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEE
Confidence 4899999999999999997754 68999997742 245555555555444554432110000 1111
Q ss_pred -e---CCCC-cc-ccccceeecCCcccccchhhHhhhhccCceEEEecC
Q 008128 489 -Y---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (577)
Q Consensus 489 -i---~~~e-il-~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (577)
+ ++.+ +| +..+|+++.|+.. ..+.+.|...++.||+.|.=.|
T Consensus 75 ~~~~~dp~~lpW~~~gvDiVle~tG~-~~s~~~a~~~l~aGak~V~iSa 122 (337)
T PTZ00023 75 VFFEKDPAAIPWGKNGVDVVCESTGV-FLTKEKAQAHLKGGAKKVIMSA 122 (337)
T ss_pred EEeCCChhhCCccccCCCEEEEecch-hcCHHHHHHHhhCCCEEEEeCC
Confidence 1 1222 47 5789999999864 4888889888888999998777
No 107
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=94.54 E-value=0.18 Score=55.22 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=70.0
Q ss_pred ceEEEEecchHHHHHHHHHHHC---CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCccccccc-------ccCC-
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK-------TYAR- 485 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~---GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~-------~~p~- 485 (577)
.+|+|-|||-+|+.+.+.|.+. ...+++|-|. .|++.+..|+.+-..+|.+..-.+ .+.+
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~---------~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk 131 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT---------GGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGK 131 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC---------CCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCE
Confidence 5899999999999999999876 3688888764 245556566666544444322110 0111
Q ss_pred -ceEeC---CCC-cc-ccccceeecCCcccccchhhHhhhhccCceEEEecC
Q 008128 486 -SKYYD---EAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (577)
Q Consensus 486 -a~~i~---~~e-il-~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (577)
..... +++ .| +..+||++.|+.. ..+.+.|..-++.|||.|.=.|
T Consensus 132 ~I~v~~~~dp~~~~w~~~gvDiVie~TG~-f~s~~~a~~hl~aGAkkV~iSa 182 (395)
T PLN03096 132 VIKVVSDRNPLNLPWGELGIDLVIEGTGV-FVDREGAGKHIQAGAKKVLITA 182 (395)
T ss_pred EEEEEEcCCcccccccccCCCEEEECcch-hhhHHHHHHHHHCCCEEEEeCC
Confidence 11122 222 46 4689999999864 4788888888888998887665
No 108
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.51 E-value=0.26 Score=55.69 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=31.6
Q ss_pred CCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEE
Q 008128 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaI 445 (577)
+.+|.||||.|.|+|++|+.+|+.|...|.+|++.
T Consensus 133 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~ 167 (525)
T TIGR01327 133 GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAY 167 (525)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 45799999999999999999999999999997654
No 109
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=94.44 E-value=0.18 Score=44.39 Aligned_cols=110 Identities=20% Similarity=0.201 Sum_probs=70.6
Q ss_pred ceEEEEecchHHHHHHHHHHHC--CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeC-CCC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAY--GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD-EAK 493 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~--GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~-~~e 493 (577)
.||.|.|+|+.|+.-...+.+. +.++++|+|. +.+.. ....+.. +...++ -++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~----------~~~~~---~~~~~~~-----------~~~~~~~~~~ 56 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP----------DPERA---EAFAEKY-----------GIPVYTDLEE 56 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS----------SHHHH---HHHHHHT-----------TSEEESSHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC----------CHHHH---HHHHHHh-----------cccchhHHHH
Confidence 3799999999999888777765 6799999997 22232 2222111 111222 244
Q ss_pred ccc-cccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHH---HHHhCCcEEe
Q 008128 494 PWN-ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVD---VLKKANVLIA 551 (577)
Q Consensus 494 il~-~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~---iL~~rGI~vi 551 (577)
+++ .++|+++=|+. +..+.+.+..+++.+..+++|=-=.....++.+ ..+++|+.+.
T Consensus 57 ll~~~~~D~V~I~tp-~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 117 (120)
T PF01408_consen 57 LLADEDVDAVIIATP-PSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVM 117 (120)
T ss_dssp HHHHTTESEEEEESS-GGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEE
T ss_pred HHHhhcCCEEEEecC-CcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 554 47999998775 456888888888899999999522222344443 3366676543
No 110
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=94.43 E-value=0.1 Score=48.51 Aligned_cols=109 Identities=15% Similarity=0.159 Sum_probs=58.8
Q ss_pred CceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCcc
Q 008128 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW 495 (577)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil 495 (577)
-.||.|.|.|+||.++++.|.+.|..|++|... ++. .... ... ..+.....+..++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr-----s~~-----sa~~----------a~~---~~~~~~~~~~~~~- 65 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSR-----SPA-----SAER----------AAA---FIGAGAILDLEEI- 65 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSC-----HH------HHHH----------HHC-----TT-----TTGG-
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC-----Ccc-----cccc----------ccc---ccccccccccccc-
Confidence 368999999999999999999999999888665 111 1100 001 1122222332333
Q ss_pred ccccceeecCCcccccchhhHhhhhcc----CceEEEecCCCCCCHHHHHHHHhCCcEE
Q 008128 496 NERCDVAFPCASQNEIDQSDAINLVNS----GCRILVEGSNMPCTPEAVDVLKKANVLI 550 (577)
Q Consensus 496 ~~~cDIlIPcA~~n~It~enA~~l~~~----~akiVvEgAN~p~T~eA~~iL~~rGI~v 550 (577)
..++|+++-|..-+.| ++-++.|.+. .=++|+=-+ +-++-+.-+-++++|..+
T Consensus 66 ~~~aDlv~iavpDdaI-~~va~~La~~~~~~~g~iVvHtS-Ga~~~~vL~p~~~~Ga~~ 122 (127)
T PF10727_consen 66 LRDADLVFIAVPDDAI-AEVAEQLAQYGAWRPGQIVVHTS-GALGSDVLAPARERGAIV 122 (127)
T ss_dssp GCC-SEEEE-S-CCHH-HHHHHHHHCC--S-TT-EEEES--SS--GGGGHHHHHTT-EE
T ss_pred cccCCEEEEEechHHH-HHHHHHHHHhccCCCCcEEEECC-CCChHHhhhhHHHCCCeE
Confidence 3479999998887777 4455566432 234555332 334455556677887654
No 111
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=94.35 E-value=0.2 Score=53.50 Aligned_cols=103 Identities=17% Similarity=0.320 Sum_probs=68.5
Q ss_pred eEEEEecchHHHHHHHHHHHC---CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCccccccc-------ccCCce
Q 008128 418 RCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK-------TYARSK 487 (577)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~---GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~-------~~p~a~ 487 (577)
||.|=|||-+|+.+.+.+.+. ...||+|-|. .|++.+..|+++-..+|.+..-++ .+ +.+
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~---------~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i-~g~ 70 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL---------TDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVV-NGK 70 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC---------CCHHHHHHHhcccCCCCCCCCcEEecCCceEEE-CCe
Confidence 589999999999999998765 5789998874 355566666665444454321110 11 122
Q ss_pred ----Ee---CCCC-cc-ccccceeecCCcccccchhhHhhhhccCceEEEecC
Q 008128 488 ----YY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (577)
Q Consensus 488 ----~i---~~~e-il-~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (577)
.. ++++ .| +..+|+++.|+.. ..+.+.|..-++.|||.|.=.|
T Consensus 71 ~~i~v~~~~dp~~~~w~~~gvDiVle~tG~-~~s~~~a~~hl~~Gak~V~iSa 122 (327)
T TIGR01534 71 FVIVVASERDPSDLPWKALGVDIVIECTGK-FRDKEKLEGHLEAGAKKVLISA 122 (327)
T ss_pred EEEEEEecCCcccCchhhcCCCEEEEccch-hhcHHHHHHHhhCCCEEEEeCC
Confidence 12 2222 36 4689999999864 4788888887788988876553
No 112
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=94.35 E-value=0.22 Score=53.46 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=70.3
Q ss_pred ceEEEEecchHHHHHHHHHHHC---CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCccccccc------ccCC--
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR-- 485 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~---GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~------~~p~-- 485 (577)
.||.|=|||-+|+.+.+.+.+. ...||+|-|. .|.+.+..|+++-..+|.+..-+. .+.+
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~---------~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~ 72 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT---------SDPRTNAHLLKYDSMLGKLNADISADENSITVNGKT 72 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC---------CCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEE
Confidence 3899999999999999997754 5789998774 255666666666555555432110 0111
Q ss_pred ceEe---CCCC-cc-ccccceeecCCcccccchhhHhhhhccCceEEEecC
Q 008128 486 SKYY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (577)
Q Consensus 486 a~~i---~~~e-il-~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (577)
.... ++++ .| +..+|+++.|+.. ..+.+.|..-++.|||.|.=.|
T Consensus 73 I~v~~~~dp~~~~W~~~gvDiV~e~tG~-f~s~~~a~~hl~aGak~V~iSa 122 (337)
T PRK07403 73 IKCVSDRNPLNLPWKEWGIDLIIESTGV-FVTKEGASKHIQAGAKKVLITA 122 (337)
T ss_pred EEEEEcCCcccCChhhcCCCEEEeccch-hhhHHHHHHHhhCCcEEEEeCC
Confidence 1111 1223 36 4689999999854 4778888877788999888776
No 113
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.32 E-value=0.2 Score=52.69 Aligned_cols=52 Identities=23% Similarity=0.357 Sum_probs=43.9
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
..+|..||+..+ ++.+.+++||+|+|.| +..||.-++.+|.+.||+ |+++.+
T Consensus 137 ~PcTp~avi~lL----~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~at-Vtichs 189 (284)
T PRK14170 137 VPCTPAGIIELI----KSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENAT-VTIAHS 189 (284)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCC
Confidence 478988877655 5678999999999999 677999999999999998 667766
No 114
>PRK08223 hypothetical protein; Validated
Probab=94.24 E-value=0.17 Score=53.29 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=32.7
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
.|+..+|+|.|.|-+|+.+|+.|...|..-+.+.|.+
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3678899999999999999999999998778887763
No 115
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=94.22 E-value=0.12 Score=46.55 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=65.9
Q ss_pred eEEEEe-cchHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCcc
Q 008128 418 RCVVSG-SGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW 495 (577)
Q Consensus 418 rVaIQG-fGNVG~~aA~~L~e~-GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil 495 (577)
||.|.| .|.||+.+++.|.+. ...++.+..++- ..|..+... ......+ .+....+ .+.-
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~----~~g~~~~~~---------~~~~~~~----~~~~~~~-~~~~ 62 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR----SAGKPLSEV---------FPHPKGF----EDLSVED-ADPE 62 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT----TTTSBHHHT---------TGGGTTT----EEEBEEE-TSGH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc----ccCCeeehh---------ccccccc----cceeEee-cchh
Confidence 689999 999999999999884 467777777621 256554332 1111111 1111111 1111
Q ss_pred -ccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHHHHHhCCcEEecch
Q 008128 496 -NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAM 554 (577)
Q Consensus 496 -~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI~viPD~ 554 (577)
-.++||++-|. .+....+.++.+++.+|++|==++..-..+ ..++++|.+
T Consensus 63 ~~~~~Dvvf~a~-~~~~~~~~~~~~~~~g~~ViD~s~~~R~~~--------~~~~~~pev 113 (121)
T PF01118_consen 63 ELSDVDVVFLAL-PHGASKELAPKLLKAGIKVIDLSGDFRLDD--------DVPYGLPEV 113 (121)
T ss_dssp HHTTESEEEE-S-CHHHHHHHHHHHHHTTSEEEESSSTTTTST--------TSEEE-HHH
T ss_pred HhhcCCEEEecC-chhHHHHHHHHHhhCCcEEEeCCHHHhCCC--------CCCEEeCCc
Confidence 15899999985 566668888888889997765444443332 445555544
No 116
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=94.21 E-value=0.14 Score=49.41 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=38.8
Q ss_pred CCCCcchHHHHHHHHHHHHHcCCCCCCceEEEEecc-hHHHHHHHHHHHCCCeEEEEEcC
Q 008128 390 LRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 390 ~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfG-NVG~~aA~~L~e~GAkVVaISDs 448 (577)
.-...|..|++..++ +.+.+++||+|+|.|-+ .||.-++.+|.+.||+ |+++++
T Consensus 14 ~~~PcTp~aii~lL~----~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~at-Vt~~h~ 68 (160)
T PF02882_consen 14 GFVPCTPLAIIELLE----YYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGAT-VTICHS 68 (160)
T ss_dssp SS--HHHHHHHHHHH----HTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-E-EEEE-T
T ss_pred CCcCCCHHHHHHHHH----hcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCe-EEeccC
Confidence 345688888876554 56889999999999965 6999999999999999 677877
No 117
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.19 E-value=0.14 Score=53.88 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=44.5
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEecch-HHHHHHHHHHHCCCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGN-VG~~aA~~L~e~GAkVVaISDs 448 (577)
..+|..||+..+ ++.+.+++||+|+|.|-++ ||.-++.+|.+.||. |+++++
T Consensus 139 ~PcTp~av~~ll----~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~at-Vtv~hs 191 (285)
T PRK10792 139 RPCTPRGIMTLL----ERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCT-VTVCHR 191 (285)
T ss_pred CCCCHHHHHHHH----HHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCe-EEEEEC
Confidence 478988887654 5568899999999999888 999999999999998 577776
No 118
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.19 E-value=0.23 Score=52.16 Aligned_cols=95 Identities=19% Similarity=0.229 Sum_probs=67.2
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHH
Q 008128 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDI 469 (577)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~ 469 (577)
...+|..|++..++ +.+.+++||+|+|.| +..||.-++.+|.+.||+ |+++.+.- + |. .+
T Consensus 137 ~~PcTp~aii~lL~----~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AT-Vt~chs~T----~---dl------~~- 197 (282)
T PRK14180 137 LESCTPKGIMTMLR----EYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKAT-VTTCHRFT----T---DL------KS- 197 (282)
T ss_pred cCCCCHHHHHHHHH----HhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEEcCCC----C---CH------HH-
Confidence 35789988876655 568899999999999 678999999999999999 56776521 1 11 11
Q ss_pred HhhcCcccccccccCCceEeCCCCccccccceeecCCc-ccccchhhHhhhhccCceEEEecCCC
Q 008128 470 KSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGSNM 533 (577)
Q Consensus 470 k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~-~n~It~enA~~l~~~~akiVvEgAN~ 533 (577)
+...+||+|-|+. .+.|+.+..+ .+|-+|=-|-|-
T Consensus 198 -------------------------~~k~ADIvIsAvGkp~~i~~~~vk----~gavVIDvGin~ 233 (282)
T PRK14180 198 -------------------------HTTKADILIVAVGKPNFITADMVK----EGAVVIDVGINH 233 (282)
T ss_pred -------------------------HhhhcCEEEEccCCcCcCCHHHcC----CCcEEEEecccc
Confidence 0246788888876 4677766543 366666556554
No 119
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=94.18 E-value=0.32 Score=52.21 Aligned_cols=106 Identities=15% Similarity=0.213 Sum_probs=71.3
Q ss_pred ceEEEEecchHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCccccccc------ccCC--ce
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR--SK 487 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~-GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~------~~p~--a~ 487 (577)
.+|+|.|||.+|+.+.+.+.+. ...++++-|. ..|.+.+..|+++-..+|++..-+. .+.+ .+
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~--------~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~ 74 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDP--------AGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIR 74 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC--------CCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEE
Confidence 4899999999999999998765 5788888764 2356666666666555555432111 1111 11
Q ss_pred Ee---CCCC-ccccccceeecCCcccccchhhHhhhhccCceEEEecCC
Q 008128 488 YY---DEAK-PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (577)
Q Consensus 488 ~i---~~~e-il~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (577)
.. +.++ .|. .+|+++.|+.. ..+.+.|...++.||+.|.=.|-
T Consensus 75 v~~~~~~~~~~w~-gvDiVle~tG~-~~s~~~a~~hl~aGak~V~iSap 121 (334)
T PRK08955 75 TTQNKAIADTDWS-GCDVVIEASGV-MKTKALLQAYLDQGVKRVVVTAP 121 (334)
T ss_pred EEecCChhhCCcc-CCCEEEEccch-hhcHHHHHHHHHCCCEEEEECCC
Confidence 12 2222 477 99999999965 47888888888889988866544
No 120
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.11 E-value=0.079 Score=52.33 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=33.1
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
.|+.++|.|.|.|-+|+.+|+.|...|..=+.+.|.+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4788999999999999999999999998667888875
No 121
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.08 E-value=0.35 Score=54.69 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=30.6
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
...+.+|+|.|.|.+|..++..+..+|++ |.+.|.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~-V~a~D~ 196 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAI-VRAFDT 196 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence 35688999999999999999999999997 666775
No 122
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=94.08 E-value=0.23 Score=54.73 Aligned_cols=105 Identities=16% Similarity=0.227 Sum_probs=68.6
Q ss_pred ceEEEEecchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccc-------cCC--c
Q 008128 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKT-------YAR--S 486 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e-~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~-------~p~--a 486 (577)
.||.|-|||..|+.+++.+.+ .+..||+|-|.. .|.+.+..|+++-..+|.+..-++. +.+ .
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~--------~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I 157 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPF--------IDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQI 157 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCC--------CCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEE
Confidence 499999999999999999875 689999987742 2555666666665555554321110 111 1
Q ss_pred eEe---CCC-Cccc-cccceeecCCcccccchhhHhhhhccCc-eEEEec
Q 008128 487 KYY---DEA-KPWN-ERCDVAFPCASQNEIDQSDAINLVNSGC-RILVEG 530 (577)
Q Consensus 487 ~~i---~~~-eil~-~~cDIlIPcA~~n~It~enA~~l~~~~a-kiVvEg 530 (577)
+.. +++ -.|. ..+||++.|+.. ..+.+.|..-++.|| |+|+.+
T Consensus 158 ~V~~~~dp~~~~w~~~gVDiVlesTG~-f~s~e~a~~hl~aGAkkVVIda 206 (421)
T PLN02272 158 KVTSKRDPAEIPWGDFGAEYVVESSGV-FTTVEKASAHLKGGAKKVVISA 206 (421)
T ss_pred EEEecCCcccCcccccCCCEEEEcCch-hccHHHHHHHhhCCCCEEEECC
Confidence 112 222 2464 589999999854 477888887777788 455543
No 123
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.86 E-value=0.16 Score=50.69 Aligned_cols=144 Identities=18% Similarity=0.142 Sum_probs=88.6
Q ss_pred CCcchHHHHHHHHHHH-----HHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhH
Q 008128 392 TEATGYGLVFFAQLIL-----ADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISF 465 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l-----~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~ 465 (577)
...|..||+..++..= ...+.+++||+|+|.| +..||.-+|.+|.+.||+ |+++|++|..+-..+-..
T Consensus 33 ~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~At-Vti~~~~~~~~~~~~~~~----- 106 (197)
T cd01079 33 LPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGAR-VYSVDINGIQVFTRGESI----- 106 (197)
T ss_pred cCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCE-EEEEecCccccccccccc-----
Confidence 4799999988776440 0014589999999999 677999999999999999 569998776653332210
Q ss_pred HHHHHhhcCcccccccccCCceEeCCCCcc--ccccceeecCCcc-cc-cchhhHhhhhccCceEEEecCCCCCCHHHHH
Q 008128 466 LRDIKSQQRSLRDYSKTYARSKYYDEAKPW--NERCDVAFPCASQ-NE-IDQSDAINLVNSGCRILVEGSNMPCTPEAVD 541 (577)
Q Consensus 466 l~~~k~~~g~l~~y~~~~p~a~~i~~~eil--~~~cDIlIPcA~~-n~-It~enA~~l~~~~akiVvEgAN~p~T~eA~~ 541 (577)
. + .+ ...+..+ ..+. -..+||+|-|... +- |+.+..+ .+|-+|==|-|.-.. +.
T Consensus 107 -~-h--s~----------t~~~~~~-~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik----~GavVIDVGi~~dvd---~~ 164 (197)
T cd01079 107 -R-H--EK----------HHVTDEE-AMTLDCLSQSDVVITGVPSPNYKVPTELLK----DGAICINFASIKNFE---PS 164 (197)
T ss_pred -c-c--cc----------ccccchh-hHHHHHhhhCCEEEEccCCCCCccCHHHcC----CCcEEEEcCCCcCcc---Hh
Confidence 0 0 00 0000000 0122 3588999998874 55 6777544 377666666664222 23
Q ss_pred HHHhCCcEEecchhccccceeehhhhh
Q 008128 542 VLKKANVLIAPAMAAGAGGVRYSIFYS 568 (577)
Q Consensus 542 iL~~rGI~viPD~~aNAGGVivS~~Ev 568 (577)
+.+... .+.|- -|-++++.+..
T Consensus 165 v~~~as-~iTPv----VGpvTva~L~~ 186 (197)
T cd01079 165 VKEKAS-IYVPS----IGKVTIAMLLR 186 (197)
T ss_pred HHhhcC-EeCCC----cCHHHHHHHHH
Confidence 333333 56773 67777766543
No 124
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.86 E-value=0.27 Score=51.82 Aligned_cols=52 Identities=17% Similarity=0.253 Sum_probs=44.0
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
..+|..||+..+ ++.+.+++||+|+|.| +..||.-++.+|.+.+|+ |+++.+
T Consensus 139 ~PcTp~av~~lL----~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~AT-Vtichs 191 (288)
T PRK14171 139 IPCTALGCLAVI----KKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCS-VTICHS 191 (288)
T ss_pred cCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCC
Confidence 478988876554 5568999999999999 678999999999999998 678876
No 125
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.86 E-value=0.2 Score=53.08 Aligned_cols=52 Identities=23% Similarity=0.253 Sum_probs=43.8
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEecc-hHHHHHHHHHHHCCCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfG-NVG~~aA~~L~e~GAkVVaISDs 448 (577)
...|..|++..+ ++.+.+++||+|+|.|-| .||..+|..|.+.|+. |+++++
T Consensus 139 ~PcTp~aii~lL----~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gat-Vtv~~~ 191 (301)
T PRK14194 139 TPCTPSGCLRLL----EDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCS-VTVVHS 191 (301)
T ss_pred CCCcHHHHHHHH----HHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEECC
Confidence 478988887655 455899999999999985 9999999999999999 566665
No 126
>PRK06141 ornithine cyclodeaminase; Validated
Probab=93.83 E-value=0.63 Score=49.05 Aligned_cols=117 Identities=15% Similarity=0.079 Sum_probs=71.6
Q ss_pred CCCceEEEEecchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCC-
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE- 491 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e-~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~- 491 (577)
.+.++|.|.|.|..|...++.+.. .+.+-|.|.+. +.++...+.+...+.+ ......+.
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R----------s~~~a~~~a~~~~~~g---------~~~~~~~~~ 183 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR----------DPAKAEALAAELRAQG---------FDAEVVTDL 183 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC----------CHHHHHHHHHHHHhcC---------CceEEeCCH
Confidence 357899999999999999987765 56555667765 2333322222211111 01222211
Q ss_pred CCccccccceeecCCccc--ccchhhHhhhhccCceEEEecCCCCCCHHHHHHHHhCCcEEecch
Q 008128 492 AKPWNERCDVAFPCASQN--EIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAM 554 (577)
Q Consensus 492 ~eil~~~cDIlIPcA~~n--~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI~viPD~ 554 (577)
++.. .+|||++=|+... .++.+. ++.++-+.+=|++.|...|....+.+++..|+=|.
T Consensus 184 ~~av-~~aDIVi~aT~s~~pvl~~~~----l~~g~~i~~ig~~~~~~~El~~~~~~~a~~~vD~~ 243 (314)
T PRK06141 184 EAAV-RQADIISCATLSTEPLVRGEW----LKPGTHLDLVGNFTPDMRECDDEAIRRASVYVDTR 243 (314)
T ss_pred HHHH-hcCCEEEEeeCCCCCEecHHH----cCCCCEEEeeCCCCcccccCCHHHHhcCcEEEcCH
Confidence 1111 4799997665532 243332 34588888999999998888777777777776554
No 127
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=93.81 E-value=0.9 Score=50.79 Aligned_cols=124 Identities=16% Similarity=0.155 Sum_probs=77.3
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhc
Q 008128 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ 473 (577)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~ 473 (577)
--++|.+.+++ ..+.+++++++.|.|.|.+|..++..|.+.|++| .+.|. +.+++..+.+.. .
T Consensus 314 TD~~G~~~~l~----~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V-~i~~R----------~~~~~~~la~~~--~ 376 (477)
T PRK09310 314 TDGEGLFSLLK----QKNIPLNNQHVAIVGAGGAAKAIATTLARAGAEL-LIFNR----------TKAHAEALASRC--Q 376 (477)
T ss_pred cCHHHHHHHHH----hcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEE-EEEeC----------CHHHHHHHHHHh--c
Confidence 34677777765 3567889999999999999999999999999974 45554 223332222110 0
Q ss_pred CcccccccccCCceEeCCCCcc-ccccceeecCCcccccchhhHhhhhccCceEEEecCCCCC-CHHHHHHHHhCCcEEe
Q 008128 474 RSLRDYSKTYARSKYYDEAKPW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPC-TPEAVDVLKKANVLIA 551 (577)
Q Consensus 474 g~l~~y~~~~p~a~~i~~~eil-~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~-T~eA~~iL~~rGI~vi 551 (577)
... ++..++- -.++||+|-|..-+..-.+ .+ .++|.+-.-+|. |+ -.+..+++|+.++
T Consensus 377 ~~~------------~~~~~~~~l~~~DiVInatP~g~~~~~---~l----~~~v~D~~Y~P~~T~-ll~~A~~~G~~~~ 436 (477)
T PRK09310 377 GKA------------FPLESLPELHRIDIIINCLPPSVTIPK---AF----PPCVVDINTLPKHSP-YTQYARSQGSSII 436 (477)
T ss_pred cce------------echhHhcccCCCCEEEEcCCCCCcchh---HH----hhhEEeccCCCCCCH-HHHHHHHCcCEEE
Confidence 010 1001110 1378999988765432111 23 248889887774 55 4466788898877
Q ss_pred cch
Q 008128 552 PAM 554 (577)
Q Consensus 552 PD~ 554 (577)
.+.
T Consensus 437 ~G~ 439 (477)
T PRK09310 437 YGY 439 (477)
T ss_pred CcH
Confidence 765
No 128
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.79 E-value=0.1 Score=57.27 Aligned_cols=108 Identities=12% Similarity=0.053 Sum_probs=68.0
Q ss_pred ceEEEEecchHHHHHHHHHHHC----------CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCc
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAY----------GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARS 486 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~----------GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a 486 (577)
.+|+|.|+|+||+.+++.|.+. +.++++|+|++..-. .+++. ++.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~--~~~~~-----------------------~~~ 58 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD--RGVDL-----------------------PGI 58 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc--cCCCC-----------------------ccc
Confidence 5899999999999999888653 468999999842211 11110 111
Q ss_pred eEeC-CCCcc-ccccceeecCCcccccchhhHhhhhccCceEEEecCCCC-CCHHHH---HHHHhCCcEEe
Q 008128 487 KYYD-EAKPW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP-CTPEAV---DVLKKANVLIA 551 (577)
Q Consensus 487 ~~i~-~~eil-~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p-~T~eA~---~iL~~rGI~vi 551 (577)
.+.+ .++++ +.+.||++.|........+-+.+.++.|..+|++ |-+ +..++. +.-+++|+.+.
T Consensus 59 ~~~~d~~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVta--NK~~~a~~~~eL~~lA~~~gv~l~ 127 (426)
T PRK06349 59 LLTTDPEELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTA--NKALLAVHGAELFAAAEEKGVDLY 127 (426)
T ss_pred ceeCCHHHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEc--CHHHHHHHHHHHHHHHHHcCCcEE
Confidence 1222 13444 4578999999866555666676667788888875 433 223333 34467788655
No 129
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=93.74 E-value=0.48 Score=51.95 Aligned_cols=104 Identities=13% Similarity=0.217 Sum_probs=64.2
Q ss_pred CCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCC
Q 008128 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE 491 (577)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~ 491 (577)
.++.|++|.|.|.|.+|..+++.|...|+.-|.+.+.+ .+++ .++.+..+. ..++.
T Consensus 176 ~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs----------~~ra---~~la~~~g~-----------~~i~~ 231 (417)
T TIGR01035 176 GSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRT----------YERA---EDLAKELGG-----------EAVKF 231 (417)
T ss_pred CCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC----------HHHH---HHHHHHcCC-----------eEeeH
Confidence 35889999999999999999999999995556677662 2222 111111110 11111
Q ss_pred CCcc--ccccceeecCCc--ccccchhhHhhhhcc--CceEEEecCCCC-CCHHH
Q 008128 492 AKPW--NERCDVAFPCAS--QNEIDQSDAINLVNS--GCRILVEGSNMP-CTPEA 539 (577)
Q Consensus 492 ~eil--~~~cDIlIPcA~--~n~It~enA~~l~~~--~akiVvEgAN~p-~T~eA 539 (577)
+++. -..+||+|-|+. ...|+.+........ +..+|+.-|+-. +.|+.
T Consensus 232 ~~l~~~l~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid~~v 286 (417)
T TIGR01035 232 EDLEEYLAEADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDVDPAV 286 (417)
T ss_pred HHHHHHHhhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCChhh
Confidence 1111 137999999954 567887777665322 234888888532 55554
No 130
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=93.71 E-value=0.46 Score=48.97 Aligned_cols=117 Identities=20% Similarity=0.264 Sum_probs=72.6
Q ss_pred ceEEEEe-cchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCC-CC
Q 008128 417 LRCVVSG-SGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AK 493 (577)
Q Consensus 417 krVaIQG-fGNVG~~aA~~L~e-~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~-~e 493 (577)
.+|+|.| +|.+|+..++.+.+ .+..++++.|....- ..|-|..++ . + ... .+....++ ++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~--~~~~~~~~~---~------~-~~~-----~gv~~~~d~~~ 64 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSS--LQGTDAGEL---A------G-IGK-----VGVPVTDDLEA 64 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc--ccCCCHHHh---c------C-cCc-----CCceeeCCHHH
Confidence 4899999 69999999998876 689999999952210 013333221 0 0 000 01222222 22
Q ss_pred ccccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHHHH----HhCC--cEEecch
Q 008128 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL----KKAN--VLIAPAM 554 (577)
Q Consensus 494 il~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL----~~rG--I~viPD~ 554 (577)
+ ..++|++|-|+. .....+++...++.++.+|+|=- ..|++..+.| +++| |++.|-+
T Consensus 65 l-~~~~DvVIdfT~-p~~~~~~~~~al~~g~~vVigtt--g~~~e~~~~l~~aA~~~g~~v~~a~Nf 127 (266)
T TIGR00036 65 V-ETDPDVLIDFTT-PEGVLNHLKFALEHGVRLVVGTT--GFSEEDKQELADLAEKAGIAAVIAPNF 127 (266)
T ss_pred h-cCCCCEEEECCC-hHHHHHHHHHHHHCCCCEEEECC--CCCHHHHHHHHHHHhcCCccEEEECcc
Confidence 2 356899999984 45567888888888999999875 3565444333 4434 5555654
No 131
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.70 E-value=0.38 Score=50.56 Aligned_cols=52 Identities=23% Similarity=0.255 Sum_probs=44.1
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHH--CCCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIA--YGAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e--~GAkVVaISDs 448 (577)
..+|..||+..++ +.+.+++||+|+|.| +..||.-++.+|.+ .+|+ |+++.+
T Consensus 138 ~PcTp~av~~ll~----~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~at-Vtvchs 192 (284)
T PRK14193 138 LPCTPRGIVHLLR----RYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENAT-VTLCHT 192 (284)
T ss_pred CCCCHHHHHHHHH----HhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCE-EEEeCC
Confidence 4789998876654 568899999999999 78899999999998 7888 677776
No 132
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=93.70 E-value=0.33 Score=50.52 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=66.4
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCccc
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWN 496 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil~ 496 (577)
++|.|.|+|++|..+|+.|.+.|..|+ +.|. +.+++..+. + .+. ..+ . +..++.+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~-~~dr----------~~~~~~~l~---~-~g~-~~~----~-----s~~~~~~ 55 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCV-GYDH----------DQDAVKAMK---E-DRT-TGV----A-----NLRELSQ 55 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEE-EEEC----------CHHHHHHHH---H-cCC-ccc----C-----CHHHHHh
Confidence 379999999999999999999998864 4554 233432222 2 111 000 0 1111111
Q ss_pred --cccceeecCCcccccchhhHhhhh---ccCceEEEecCCCC--CCHHHHHHHHhCCcEEec
Q 008128 497 --ERCDVAFPCASQNEIDQSDAINLV---NSGCRILVEGSNMP--CTPEAVDVLKKANVLIAP 552 (577)
Q Consensus 497 --~~cDIlIPcA~~n~It~enA~~l~---~~~akiVvEgAN~p--~T~eA~~iL~~rGI~viP 552 (577)
..||+++-|-... ...+....+. +.+ ++|+...|.. .|.+..+.++++|+.++-
T Consensus 56 ~~~~~dvIi~~vp~~-~~~~v~~~l~~~l~~g-~ivid~st~~~~~t~~~~~~~~~~g~~~vd 116 (298)
T TIGR00872 56 RLSAPRVVWVMVPHG-IVDAVLEELAPTLEKG-DIVIDGGNSYYKDSLRRYKLLKEKGIHLLD 116 (298)
T ss_pred hcCCCCEEEEEcCch-HHHHHHHHHHhhCCCC-CEEEECCCCCcccHHHHHHHHHhcCCeEEe
Confidence 3579988776654 3333333332 223 5888888873 567777889999998764
No 133
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=93.70 E-value=0.27 Score=54.91 Aligned_cols=115 Identities=16% Similarity=0.134 Sum_probs=69.1
Q ss_pred eEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEe-CCCCccc
Q 008128 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DEAKPWN 496 (577)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i-~~~eil~ 496 (577)
+|.|.|.|++|..+|+.|.+.|.+ |.+-|. +.++.+.+.+.....+. ..+.. +.+++..
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~-V~v~dr----------~~~~~~~l~~~~~~~g~---------~i~~~~s~~e~v~ 62 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFK-ISVYNR----------TYEKTEEFVKKAKEGNT---------RVKGYHTLEELVN 62 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCe-EEEEeC----------CHHHHHHHHHhhhhcCC---------cceecCCHHHHHh
Confidence 789999999999999999999998 455554 33443333322111111 00011 1122332
Q ss_pred --cccceeecCCcccccchhhHhhhhc--cCceEEEecCCCC--CCHHHHHHHHhCCcEEec
Q 008128 497 --ERCDVAFPCASQNEIDQSDAINLVN--SGCRILVEGSNMP--CTPEAVDVLKKANVLIAP 552 (577)
Q Consensus 497 --~~cDIlIPcA~~n~It~enA~~l~~--~~akiVvEgAN~p--~T~eA~~iL~~rGI~viP 552 (577)
.++|+++-|.+......+....|+. ..-++|+.+.|.- .|.+-.+.+.++||.|+=
T Consensus 63 ~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fld 124 (470)
T PTZ00142 63 SLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLG 124 (470)
T ss_pred cCCCCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEc
Confidence 2588777775544444443333321 1346899999974 456666889999999863
No 134
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.63 E-value=0.2 Score=52.64 Aligned_cols=53 Identities=25% Similarity=0.377 Sum_probs=43.4
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCceEEEEecchH-HHHHHHHHHHCCCeEEEEEcC
Q 008128 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKI-AMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNV-G~~aA~~L~e~GAkVVaISDs 448 (577)
-..+|..|++.. |++.+.+++||+|+|.|.|++ |.-++.+|.+.|++| +++.+
T Consensus 137 ~~PcTp~aii~l----L~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atV-t~~hs 190 (285)
T PRK14189 137 FRPCTPYGVMKM----LESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATV-TICHS 190 (285)
T ss_pred CcCCCHHHHHHH----HHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEE-EEecC
Confidence 347898887755 556689999999999998776 999999999999995 45554
No 135
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=93.54 E-value=0.12 Score=55.60 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=32.4
Q ss_pred cCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEE
Q 008128 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVS 444 (577)
Q Consensus 410 ~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVa 444 (577)
+|.++.|||+.|.|+|.+|+.+|..+.-.|.++|+
T Consensus 140 ~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~ 174 (406)
T KOG0068|consen 140 LGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIG 174 (406)
T ss_pred eeeEEeccEEEEeecccchHHHHHHHHhcCceEEe
Confidence 47789999999999999999999999999999875
No 136
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.51 E-value=0.19 Score=61.04 Aligned_cols=121 Identities=12% Similarity=0.044 Sum_probs=77.9
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCC-Ce------------EEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccc
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYG-AI------------PVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYS 480 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~G-Ak------------VVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~ 480 (577)
.+.++|+|.|.|.||+..|+.|.+.. +. +|+|+|. +.+++..+. +....+.
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~----------~~~~a~~la---~~~~~~~--- 630 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL----------YLKDAKETV---EGIENAE--- 630 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC----------CHHHHHHHH---HhcCCCc---
Confidence 34679999999999999999998753 33 5788886 222321111 1110100
Q ss_pred cccCCceE-eCC-CCccc--cccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHHHHHhCCcEEecchh
Q 008128 481 KTYARSKY-YDE-AKPWN--ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMA 555 (577)
Q Consensus 481 ~~~p~a~~-i~~-~eil~--~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI~viPD~~ 555 (577)
.... +++ +++.. .++|++|=|... ..+.+.|..-++.|+.+|+|.-..+-+.+.++.-+++|+.++|+.-
T Consensus 631 ----~v~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~G 704 (1042)
T PLN02819 631 ----AVQLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMG 704 (1042)
T ss_pred ----eEEeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCc
Confidence 0111 222 33433 469999988754 6788888888889999999973322233334666889999998764
No 137
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=93.50 E-value=0.22 Score=51.28 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=58.9
Q ss_pred ceEEEEecchHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCC-CCc
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AKP 494 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~-GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~-~ei 494 (577)
+||+|.|+|++|+..++.|.+. +..++++++.. .. .++. .+. +. .+...+++ +++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~-----~~---~~~~---~~~------~~------~~~~~~~d~~~l 58 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPE-----HS---IDAV---RRA------LG------EAVRVVSSVDAL 58 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcC-----CC---HHHH---hhh------hc------cCCeeeCCHHHh
Confidence 4899999999999999998875 67888887541 11 1111 000 00 01112222 233
Q ss_pred cccccceeecCCcccccchhhHhhhhccCceEEEe
Q 008128 495 WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVE 529 (577)
Q Consensus 495 l~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvE 529 (577)
..++|+++.|+... ...+.+...++.|+.+|+|
T Consensus 59 -~~~~DvVve~t~~~-~~~e~~~~aL~aGk~Vvi~ 91 (265)
T PRK13303 59 -PQRPDLVVECAGHA-ALKEHVVPILKAGIDCAVI 91 (265)
T ss_pred -ccCCCEEEECCCHH-HHHHHHHHHHHcCCCEEEe
Confidence 56799999999876 4478888888999999996
No 138
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.47 E-value=0.27 Score=51.75 Aligned_cols=53 Identities=25% Similarity=0.297 Sum_probs=44.4
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCceEEEEecc-hHHHHHHHHHHHCCCeEEEEEcC
Q 008128 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfG-NVG~~aA~~L~e~GAkVVaISDs 448 (577)
-..+|..||+..+ ++.+.+++||+|+|.|-| .||.-+|.+|.+.||. |+++++
T Consensus 136 ~~PcTp~avi~lL----~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAt-Vtv~hs 189 (285)
T PRK14191 136 FVPATPMGVMRLL----KHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGAS-VSVCHI 189 (285)
T ss_pred CCCCcHHHHHHHH----HHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCE-EEEEeC
Confidence 3578988887654 556889999999999987 8999999999999999 566665
No 139
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.37 E-value=0.9 Score=47.70 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=44.2
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCceEEEEecc-hHHHHHHHHHHHCCCeEEEEEcC
Q 008128 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfG-NVG~~aA~~L~e~GAkVVaISDs 448 (577)
-..+|..|++..+ ++.+.+++|++|+|.|-+ .||..+|.+|...|++ |+++++
T Consensus 131 ~~PcTp~av~~ll----~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~at-Vtv~hs 184 (279)
T PRK14178 131 FAPCTPNGIMTLL----HEYKISIAGKRAVVVGRSIDVGRPMAALLLNADAT-VTICHS 184 (279)
T ss_pred CCCCCHHHHHHHH----HHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCe-eEEEec
Confidence 3578998887654 556889999999999987 9999999999999998 556665
No 140
>PRK11579 putative oxidoreductase; Provisional
Probab=93.33 E-value=0.52 Score=49.81 Aligned_cols=109 Identities=15% Similarity=0.162 Sum_probs=68.1
Q ss_pred ceEEEEecchHHH-HHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeC-CCC
Q 008128 417 LRCVVSGSGKIAM-HVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD-EAK 493 (577)
Q Consensus 417 krVaIQGfGNVG~-~aA~~L~e-~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~-~~e 493 (577)
.||.|.|+|.+|. +.+..+.. .++++++|+|.+ + +++ . +. ++.....+ -++
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~-----~-----~~~---~---~~----------~~~~~~~~~~~e 58 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSD-----A-----TKV---K---AD----------WPTVTVVSEPQH 58 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCC-----H-----HHH---H---hh----------CCCCceeCCHHH
Confidence 5899999999997 45666655 479999999973 2 221 1 11 11222222 244
Q ss_pred ccc-cccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHHHH---HhCCcEEec
Q 008128 494 PWN-ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL---KKANVLIAP 552 (577)
Q Consensus 494 il~-~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL---~~rGI~viP 552 (577)
++. .++|+++=|+ .+..+.+.+...++.|..++||=-=..+..||++++ +++|+.+..
T Consensus 59 ll~~~~vD~V~I~t-p~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v 120 (346)
T PRK11579 59 LFNDPNIDLIVIPT-PNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSV 120 (346)
T ss_pred HhcCCCCCEEEEcC-CcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 553 4788888764 556788888888888888998742112234555443 666776543
No 141
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=93.30 E-value=0.43 Score=51.40 Aligned_cols=105 Identities=15% Similarity=0.265 Sum_probs=71.5
Q ss_pred ceEEEEecchHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCccccccc------ccCC--ce
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK------TYAR--SK 487 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~-GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~------~~p~--a~ 487 (577)
.||.|-|||-+|+.+.+.+.+. ...||+|-|. .|.+.+..|+++-..+|.+..-+. .+.+ ..
T Consensus 3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~---------~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~ 73 (343)
T PRK07729 3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINAS---------YPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIR 73 (343)
T ss_pred eEEEEECcChHHHHHHHHHhhcCCcEEEEecCC---------CCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEE
Confidence 4899999999999999997754 5789999774 356666667766555554432111 0111 11
Q ss_pred Ee---CCCC-cc-ccccceeecCCcccccchhhHhhhhccCceEEEecC
Q 008128 488 YY---DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (577)
Q Consensus 488 ~i---~~~e-il-~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (577)
.. ++++ .| +..+|+++.|+.. ..+.+.|..-++.||+.|.=.|
T Consensus 74 v~~~~dp~~~~W~~~gvDiVle~tG~-f~s~~~a~~hl~aGak~V~iSa 121 (343)
T PRK07729 74 LLNNRDPKELPWTDLGIDIVIEATGK-FNSKEKAILHVEAGAKKVILTA 121 (343)
T ss_pred EEEcCChhhCcccccCCCEEEEccch-hhhHhHHHHHHHcCCeEEEeCC
Confidence 22 2333 37 4689999999854 4788888888888999887664
No 142
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=93.28 E-value=0.21 Score=53.55 Aligned_cols=96 Identities=15% Similarity=0.183 Sum_probs=60.5
Q ss_pred EEEEecchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCC-------ce-Ee
Q 008128 419 CVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYAR-------SK-YY 489 (577)
Q Consensus 419 VaIQGfGNVG~~aA~~L~e-~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~-------a~-~i 489 (577)
|+|.|||.+|+..++.+.+ .+.++|+|+|. +|+ ....+.... + ...|. .++. .. .+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~-----~~~-----~~a~lA~~l---g-yds~~-~~~~~~~~~~~~~l~v 65 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKT-----SPD-----FEAYRAKEL---G-IPVYA-ASEEFIPRFEEAGIEV 65 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecC-----ChH-----HHHHHHHHh---C-CCEEe-ecCCcceEeccCceEe
Confidence 5799999999999998765 57899999995 332 211222211 1 11111 1111 00 11
Q ss_pred C--CCCccccccceeecCCcccccchhhHhhhhccCceEEEecC
Q 008128 490 D--EAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (577)
Q Consensus 490 ~--~~eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (577)
. .++++ ..||++++|+ ....+.+|++...+.++|.|.-||
T Consensus 66 ~g~~eeLl-~~vDiVve~T-p~~~~~~na~~~~~~GakaVl~~~ 107 (333)
T TIGR01546 66 AGTLEDLL-EKVDIVVDAT-PGGIGAKNKPLYEKAGVKAIFQGG 107 (333)
T ss_pred cCCHHHHh-hcCCEEEECC-CCCCChhhHHHHHhCCcCEEEECC
Confidence 1 12333 4799999996 666778888888888888888775
No 143
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.23 E-value=0.26 Score=50.07 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=31.4
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
|+.++|+|.|.|-||+++++.|.+.|..=+.+.|.+
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 577899999999999999999999997657777753
No 144
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.23 E-value=2.2 Score=44.73 Aligned_cols=138 Identities=12% Similarity=0.075 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCc
Q 008128 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS 475 (577)
Q Consensus 396 G~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~ 475 (577)
|+|.+.+++ ..+.++++++++|.|.|-.++.++-.|...|++-|.|.+. +++. .++...|.+.......
T Consensus 108 ~~Gf~~~l~----~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nR-----t~~~--~~ka~~la~~~~~~~~ 176 (288)
T PRK12749 108 GTGHIRAIK----ESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNR-----RDEF--FDKALAFAQRVNENTD 176 (288)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeC-----CccH--HHHHHHHHHHhhhccC
Confidence 667666665 4577899999999999999999998899999877888887 2221 2233223322111000
Q ss_pred ccccccccCCceEeCCC--C-cc--ccccceeecCCcccccc---h---hhHhhhhccCceEEEecCCCCCCHHHHHHHH
Q 008128 476 LRDYSKTYARSKYYDEA--K-PW--NERCDVAFPCASQNEID---Q---SDAINLVNSGCRILVEGSNMPCTPEAVDVLK 544 (577)
Q Consensus 476 l~~y~~~~p~a~~i~~~--e-il--~~~cDIlIPcA~~n~It---~---enA~~l~~~~akiVvEgAN~p~T~eA~~iL~ 544 (577)
......+.+ + +. ..++||+|-|+.-+--. . .....| . .-.+|.+-.-.|....-.+.-+
T Consensus 177 --------~~~~~~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l-~-~~~~v~D~vY~P~~T~ll~~A~ 246 (288)
T PRK12749 177 --------CVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLL-H-PGLLVTECVYNPHMTKLLQQAQ 246 (288)
T ss_pred --------ceEEEechhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHC-C-CCCEEEEecCCCccCHHHHHHH
Confidence 001111111 1 11 13689999887643221 1 011222 1 3467888888885444455567
Q ss_pred hCCcEEecch
Q 008128 545 KANVLIAPAM 554 (577)
Q Consensus 545 ~rGI~viPD~ 554 (577)
++|+.++++.
T Consensus 247 ~~G~~~~~Gl 256 (288)
T PRK12749 247 QAGCKTIDGY 256 (288)
T ss_pred HCCCeEECCH
Confidence 7888777664
No 145
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=93.17 E-value=0.45 Score=49.99 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=44.7
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCceEEEEec-chHHHHHHHHHHHCCCeEE
Q 008128 393 EATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPV 443 (577)
Q Consensus 393 eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVV 443 (577)
.-|.|-.+--+.+.++.+|.+++..+|+|.|. |.+|..+|+.|..++.+..
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ 195 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKE 195 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEE
Confidence 35888888888888889999999999999996 9999999999998776644
No 146
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=93.10 E-value=2.3 Score=44.79 Aligned_cols=135 Identities=15% Similarity=0.092 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCc
Q 008128 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS 475 (577)
Q Consensus 396 G~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~ 475 (577)
|+|++..+++.. .+.+.+|++|+|.|.|-.++.++..|.+.|++=|.|.+. +.++...|.+.....+.
T Consensus 108 ~~G~~~~L~~~~--~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR----------t~~ra~~La~~~~~~~~ 175 (283)
T COG0169 108 GIGFLRALKEFG--LPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNR----------TRERAEELADLFGELGA 175 (283)
T ss_pred HHHHHHHHHhcC--CCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC----------CHHHHHHHHHHhhhccc
Confidence 566665554421 235778999999999999999999999999865777776 34444334433222221
Q ss_pred ccccccccCCceEeCCCCcccc-ccceeecCCcccccchh-----hHhhhhccCceEEEecCCCCCCHHHHHHHHhCCcE
Q 008128 476 LRDYSKTYARSKYYDEAKPWNE-RCDVAFPCASQNEIDQS-----DAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVL 549 (577)
Q Consensus 476 l~~y~~~~p~a~~i~~~eil~~-~cDIlIPcA~~n~It~e-----nA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI~ 549 (577)
+ .......++-.. ++||+|-|+.-+--..+ +...| .+..+|.+---+|....-.+.-+++|..
T Consensus 176 ---~------~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~~~~l--~~~~~v~D~vY~P~~TplL~~A~~~G~~ 244 (283)
T COG0169 176 ---A------VEAAALADLEGLEEADLLINATPVGMAGPEGDSPVPAELL--PKGAIVYDVVYNPLETPLLREARAQGAK 244 (283)
T ss_pred ---c------cccccccccccccccCEEEECCCCCCCCCCCCCCCcHHhc--CcCCEEEEeccCCCCCHHHHHHHHcCCe
Confidence 0 011111111122 69999998764333221 12223 2678999999998533444555777876
Q ss_pred Eecc
Q 008128 550 IAPA 553 (577)
Q Consensus 550 viPD 553 (577)
++.+
T Consensus 245 ~idG 248 (283)
T COG0169 245 TIDG 248 (283)
T ss_pred EECc
Confidence 5554
No 147
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=93.09 E-value=0.35 Score=49.76 Aligned_cols=109 Identities=15% Similarity=0.099 Sum_probs=60.2
Q ss_pred eEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCcccc
Q 008128 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNE 497 (577)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil~~ 497 (577)
+|.|.|+|++|..+|+.|.+.|..|+ +.|. + .+++..+. + .+. ...+...-.-.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~-~~dr-------~---~~~~~~~~---~-~g~-----------~~~~~~~~~~~ 54 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLH-VTTI-------G---PEVADELL---A-AGA-----------VTAETARQVTE 54 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEE-EEcC-------C---HHHHHHHH---H-CCC-----------cccCCHHHHHh
Confidence 48899999999999999999999854 4454 2 23332211 1 111 11111001124
Q ss_pred ccceeecCCcccccchhhH---hhhhc--cCceEEEecCCCCC--CHHHHHHHHhCCcEEec
Q 008128 498 RCDVAFPCASQNEIDQSDA---INLVN--SGCRILVEGSNMPC--TPEAVDVLKKANVLIAP 552 (577)
Q Consensus 498 ~cDIlIPcA~~n~It~enA---~~l~~--~~akiVvEgAN~p~--T~eA~~iL~~rGI~viP 552 (577)
+||+++-|-.......... ..+.. ..-++|+.-++... +.+-.+.++++|+.++-
T Consensus 55 ~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~ 116 (291)
T TIGR01505 55 QADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD 116 (291)
T ss_pred cCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe
Confidence 7999999876542222211 11111 12356776555442 23445778888987665
No 148
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=93.08 E-value=0.39 Score=53.29 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=70.7
Q ss_pred ceEEEEecchHHHHHHHHHHHC---CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCccccccc-------ccCC-
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSK-------TYAR- 485 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~---GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~-------~~p~- 485 (577)
.||.|=|||-+|+.+.+.+.+. ...||+|-|. .|++.+..|+++-..+|.+..-++ .+.+
T Consensus 76 ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~---------~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk 146 (442)
T PLN02237 76 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGK 146 (442)
T ss_pred EEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC---------CCHHHHHHHHccccCCCCcCCceEECCCCEEEECCE
Confidence 6899999999999999987743 5789999774 255566666666555555432111 0111
Q ss_pred -ceEeCC----CCcc-ccccceeecCCcccccchhhHhhhhccCceEEEecC
Q 008128 486 -SKYYDE----AKPW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (577)
Q Consensus 486 -a~~i~~----~eil-~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (577)
.+..+. +-.| +..+||++.|+.. ..+.+.|..-++.|||.|.=.|
T Consensus 147 ~I~V~~~~dp~~l~W~~~gVDiViE~TG~-f~s~e~a~~hl~aGAkkV~iSA 197 (442)
T PLN02237 147 PIKVVSNRDPLKLPWAELGIDIVIEGTGV-FVDGPGAGKHIQAGAKKVIITA 197 (442)
T ss_pred EEEEEEcCCchhCChhhcCCCEEEEccCh-hhhHHHHHHHHhCCCEEEEECC
Confidence 111111 2246 4789999999854 5788888888888999887764
No 149
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.06 E-value=0.14 Score=48.98 Aligned_cols=34 Identities=32% Similarity=0.328 Sum_probs=31.3
Q ss_pred CCCCCceEEEEecchHHHHHHHHHHHCCCeEEEE
Q 008128 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaI 445 (577)
.+++|++|+|.|.|+||..-++.|.+.|+.|+-|
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 5799999999999999999999999999997655
No 150
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=93.05 E-value=0.31 Score=41.51 Aligned_cols=89 Identities=12% Similarity=0.159 Sum_probs=52.1
Q ss_pred eEEEEecchHHHHHHHHHHHCC---CeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEe--CCC
Q 008128 418 RCVVSGSGKIAMHVLEKLIAYG---AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY--DEA 492 (577)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~G---AkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i--~~~ 492 (577)
||.|.|+||+|..+++.|.+.| .+|.-+++. +.+++ .+++++.+ .... +..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r----------~~~~~---~~~~~~~~-----------~~~~~~~~~ 56 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR----------SPEKA---AELAKEYG-----------VQATADDNE 56 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES----------SHHHH---HHHHHHCT-----------TEEESEEHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC----------cHHHH---HHHHHhhc-----------cccccCChH
Confidence 6789999999999999999999 887656565 23343 23322221 1112 222
Q ss_pred CccccccceeecCCcccccchhhHhhh-hccCceEEEecCC
Q 008128 493 KPWNERCDVAFPCASQNEIDQSDAINL-VNSGCRILVEGSN 532 (577)
Q Consensus 493 eil~~~cDIlIPcA~~n~It~enA~~l-~~~~akiVvEgAN 532 (577)
++.. .+||++-|-....+.+ -+..+ ....-++|+--+|
T Consensus 57 ~~~~-~advvilav~p~~~~~-v~~~i~~~~~~~~vis~~a 95 (96)
T PF03807_consen 57 EAAQ-EADVVILAVKPQQLPE-VLSEIPHLLKGKLVISIAA 95 (96)
T ss_dssp HHHH-HTSEEEE-S-GGGHHH-HHHHHHHHHTTSEEEEEST
T ss_pred Hhhc-cCCEEEEEECHHHHHH-HHHHHhhccCCCEEEEeCC
Confidence 3333 8999999987766643 22222 1125566665544
No 151
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.89 E-value=0.4 Score=49.94 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=32.0
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
.|++.+|+|.|.|-||+++|+.|.+.|..=++|.|.+
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3678899999999999999999999996557787764
No 152
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=92.88 E-value=0.35 Score=48.25 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHH--HHHCCCeEEEEEcC
Q 008128 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEK--LIAYGAIPVSVSDA 448 (577)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~--L~e~GAkVVaISDs 448 (577)
-||-|-+-.+++.+-+|.+ +-..++|+|.||.|++++.+ ..+.|.+++++.|.
T Consensus 64 ~GYnV~~L~~ff~~~Lg~~-~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv 118 (211)
T COG2344 64 YGYNVKYLRDFFDDLLGQD-KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDV 118 (211)
T ss_pred CCccHHHHHHHHHHHhCCC-cceeEEEEccChHHHHHhcCcchhhcCceEEEEecC
Confidence 3677777777777767755 33579999999999998854 34689999999998
No 153
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=92.86 E-value=0.45 Score=49.64 Aligned_cols=87 Identities=18% Similarity=0.147 Sum_probs=59.1
Q ss_pred ceEEEEecchHHHHHHHHHHHC---CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeC-CC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD-EA 492 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~---GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~-~~ 492 (577)
.||.|.|+|++|+.+++.|... +..+++|.|+. + ++. .+.. +. ...++ -+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~-----~-----~~~---~~~~---~~----------~~~~~~l~ 56 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNA-----A-----DLP---PALA---GR----------VALLDGLP 56 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCC-----H-----HHH---HHhh---cc----------CcccCCHH
Confidence 5899999999999999998653 36788887762 1 111 1110 00 11122 23
Q ss_pred CccccccceeecCCcccccchhhHhhhhccCceEEEec
Q 008128 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEG 530 (577)
Q Consensus 493 eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEg 530 (577)
+++..++|+++.||.+..+ .+-+..+++.++.+|+-.
T Consensus 57 ~ll~~~~DlVVE~A~~~av-~e~~~~iL~~g~dlvv~S 93 (267)
T PRK13301 57 GLLAWRPDLVVEAAGQQAI-AEHAEGCLTAGLDMIICS 93 (267)
T ss_pred HHhhcCCCEEEECCCHHHH-HHHHHHHHhcCCCEEEEC
Confidence 4556789999999988776 566777778888888754
No 154
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=92.86 E-value=1.3 Score=50.15 Aligned_cols=136 Identities=14% Similarity=0.094 Sum_probs=80.0
Q ss_pred cchHHHHHHHHHHHHH------cCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHH
Q 008128 394 ATGYGLVFFAQLILAD------MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLR 467 (577)
Q Consensus 394 ATG~GV~~~~~~~l~~------~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~ 467 (577)
--++|++.+++..+.. .+.++++++|+|.|.|.+|+.++..|.+.|++ |.|.+. +.+++..+.
T Consensus 351 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~-V~i~nR----------~~e~a~~la 419 (529)
T PLN02520 351 TDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGAR-VVIANR----------TYERAKELA 419 (529)
T ss_pred ccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEcC----------CHHHHHHHH
Confidence 4478888888764422 24578999999999999999999999999997 456665 233432222
Q ss_pred HHHhhcCcccccccccCCceEeCC-CCccccccceeecCCcccccc---hh--hHhhhhccCceEEEecCCCCCCHHHHH
Q 008128 468 DIKSQQRSLRDYSKTYARSKYYDE-AKPWNERCDVAFPCASQNEID---QS--DAINLVNSGCRILVEGSNMPCTPEAVD 541 (577)
Q Consensus 468 ~~k~~~g~l~~y~~~~p~a~~i~~-~eil~~~cDIlIPcA~~n~It---~e--nA~~l~~~~akiVvEgAN~p~T~eA~~ 541 (577)
+.. ...... ++. .+.+..++||+|-|+.-+.-. .. +...| ....+|.+-.-+|....-.+
T Consensus 420 ~~l--~~~~~~----------~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l--~~~~~v~D~vY~P~~T~ll~ 485 (529)
T PLN02520 420 DAV--GGQALT----------LADLENFHPEEGMILANTTSVGMQPNVDETPISKHAL--KHYSLVFDAVYTPKITRLLR 485 (529)
T ss_pred HHh--CCceee----------HhHhhhhccccCeEEEecccCCCCCCCCCCcccHhhC--CCCCEEEEeccCCCcCHHHH
Confidence 211 001100 110 112234678998766533211 11 11122 13568899988885434444
Q ss_pred HHHhCCcEEecch
Q 008128 542 VLKKANVLIAPAM 554 (577)
Q Consensus 542 iL~~rGI~viPD~ 554 (577)
.-+++|..++.+.
T Consensus 486 ~A~~~G~~~~~Gl 498 (529)
T PLN02520 486 EAEESGAIIVSGT 498 (529)
T ss_pred HHHHCCCeEeCcH
Confidence 4566777666553
No 155
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=92.85 E-value=0.24 Score=52.53 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=77.2
Q ss_pred CCceEEEEecchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCC
Q 008128 415 KGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK 493 (577)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e-~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~e 493 (577)
+..+|+|.|.|++|...+.++.+ .+..+++++|. |++- ..+ ...++.| +..+ +.+. +.
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdi-----d~es---~gl----a~A~~~G-i~~~---~~~i-----e~ 61 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGI-----DPES---DGL----ARARRLG-VATS---AEGI-----DG 61 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeC-----Chhh---HHH----HHHHHcC-CCcc---cCCH-----HH
Confidence 35789999999999987777765 57899999997 4431 011 1111112 1110 1111 22
Q ss_pred ccc----cccceeecCCcccccchhhHhhhhccCceEEEec--CCCCC-CHHH--HHHHH--hCCcEEecchhcccc
Q 008128 494 PWN----ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEG--SNMPC-TPEA--VDVLK--KANVLIAPAMAAGAG 559 (577)
Q Consensus 494 il~----~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEg--AN~p~-T~eA--~~iL~--~rGI~viPD~~aNAG 559 (577)
++. .++|+++-|+ .+..+.+.+.++.+.|+.+|.+- +++|+ -|+- ++.+. ..++...|+-.++..
T Consensus 62 LL~~~~~~dIDiVf~AT-~a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~~ 137 (302)
T PRK08300 62 LLAMPEFDDIDIVFDAT-SAGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPI 137 (302)
T ss_pred HHhCcCCCCCCEEEECC-CHHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHHH
Confidence 332 4689999877 55688999999999999999986 46662 2322 23333 457777777665543
No 156
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=92.83 E-value=0.39 Score=49.95 Aligned_cols=108 Identities=9% Similarity=0.109 Sum_probs=61.5
Q ss_pred eEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCcccc
Q 008128 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNE 497 (577)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil~~ 497 (577)
+|.|.|.|++|...|+.|.+.|.+| .+.|. +.+++. +..+. + +...+...-.-.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V-~v~d~----------~~~~~~---~~~~~-g-----------~~~~~s~~~~~~ 56 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQL-QVFDV----------NPQAVD---ALVDK-G-----------ATPAASPAQAAA 56 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeE-EEEcC----------CHHHHH---HHHHc-C-----------CcccCCHHHHHh
Confidence 7999999999999999999999885 45554 223322 12111 1 111111011224
Q ss_pred ccceeecCCcccccchhhH---hhhhc--cCceEEEecCCCC--CCHHHHHHHHhCCcEEe
Q 008128 498 RCDVAFPCASQNEIDQSDA---INLVN--SGCRILVEGSNMP--CTPEAVDVLKKANVLIA 551 (577)
Q Consensus 498 ~cDIlIPcA~~n~It~enA---~~l~~--~~akiVvEgAN~p--~T~eA~~iL~~rGI~vi 551 (577)
+||++|-|-.......+.. ..+.. ..-++|+.-+..+ .+.+..+.+.++|+.|+
T Consensus 57 ~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l 117 (296)
T PRK15461 57 GAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM 117 (296)
T ss_pred cCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 7899998876543221111 11111 1234666655554 34566688899998876
No 157
>PLN02928 oxidoreductase family protein
Probab=92.81 E-value=0.15 Score=54.55 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=31.8
Q ss_pred CCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEE
Q 008128 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaI 445 (577)
+.+|.|+|+.|.|+|++|+.+|+.|...|.+|++.
T Consensus 154 ~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~ 188 (347)
T PLN02928 154 GDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLAT 188 (347)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE
Confidence 35799999999999999999999999999997754
No 158
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.76 E-value=0.15 Score=50.56 Aligned_cols=35 Identities=37% Similarity=0.505 Sum_probs=31.3
Q ss_pred CCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEE
Q 008128 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaIS 446 (577)
.+++|++|+|.|.|.||...++.|.+.|++|+-|+
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence 46899999999999999999999999999976553
No 159
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=92.66 E-value=0.12 Score=54.72 Aligned_cols=116 Identities=27% Similarity=0.277 Sum_probs=72.0
Q ss_pred cCCCCCCCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHh
Q 008128 386 SGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKIS 464 (577)
Q Consensus 386 GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~ 464 (577)
=|++|-+..|+| ++ |.+.+..-.|.||+|++ .|.||+-+.++..-+|++||+++-+ .++.+
T Consensus 128 LgvLGmpG~TAY---~g----Ll~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg-----------~eK~~ 189 (340)
T COG2130 128 LGVLGMPGLTAY---FG----LLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGG-----------AEKCD 189 (340)
T ss_pred HhhcCCchHHHH---HH----HHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCC-----------HHHHH
Confidence 355665555554 33 44567777899999999 6999998888877799999999986 12332
Q ss_pred HHHHHHhhcC--cccccccccCCceEeCCCCccc----cccceeecCCcccccchhhHhhhhccCceEEEecC
Q 008128 465 FLRDIKSQQR--SLRDYSKTYARSKYYDEAKPWN----ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (577)
Q Consensus 465 ~l~~~k~~~g--~l~~y~~~~p~a~~i~~~eil~----~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (577)
.+.+ .-| ..-+| ... +-.+.|. --.||++.|-..++.+. +-.+++.+|||++.|+
T Consensus 190 ~l~~---~lGfD~~idy----k~~---d~~~~L~~a~P~GIDvyfeNVGg~v~DA--v~~~ln~~aRi~~CG~ 250 (340)
T COG2130 190 FLTE---ELGFDAGIDY----KAE---DFAQALKEACPKGIDVYFENVGGEVLDA--VLPLLNLFARIPVCGA 250 (340)
T ss_pred HHHH---hcCCceeeec----Ccc---cHHHHHHHHCCCCeEEEEEcCCchHHHH--HHHhhccccceeeeee
Confidence 2221 111 11111 000 0011121 23599999988777643 3344566899999996
No 160
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=92.55 E-value=0.66 Score=48.29 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=64.0
Q ss_pred eEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEe-CCCCccc
Q 008128 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DEAKPWN 496 (577)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i-~~~eil~ 496 (577)
+|.|.|+|++|+..|+.|.+.|..|+ +.|. +.+++.. .++ .+ +... +.+++..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~-v~dr----------~~~~~~~---~~~-~g-----------~~~~~s~~~~~~ 55 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVV-GYDV----------NQEAVDV---AGK-LG-----------ITARHSLEELVS 55 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEE-EEEC----------CHHHHHH---HHH-CC-----------CeecCCHHHHHH
Confidence 68999999999999999999998854 5665 2233222 211 11 1111 1122222
Q ss_pred -c-ccceeecCCcccccchhhHhhhh---ccCceEEEecCCC-C-CCHHHHHHHHhCCcEEec
Q 008128 497 -E-RCDVAFPCASQNEIDQSDAINLV---NSGCRILVEGSNM-P-CTPEAVDVLKKANVLIAP 552 (577)
Q Consensus 497 -~-~cDIlIPcA~~n~It~enA~~l~---~~~akiVvEgAN~-p-~T~eA~~iL~~rGI~viP 552 (577)
. .||+++-|-.......+....+. +.+ ++|+.-++. | .+.+..+.++++|+.|+-
T Consensus 56 ~~~~advVi~~vp~~~~~~~v~~~i~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 56 KLEAPRTIWVMVPAGEVTESVIKDLYPLLSPG-DIVVDGGNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred hCCCCCEEEEEecCchHHHHHHHHHhccCCCC-CEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence 1 27888887665533333333332 223 477776654 4 455556788899998764
No 161
>smart00597 ZnF_TTF zinc finger in transposases and transcription factors.
Probab=92.52 E-value=0.028 Score=49.39 Aligned_cols=66 Identities=23% Similarity=0.564 Sum_probs=52.5
Q ss_pred HHHHHHhhcccc-eeEEeeccCchhhhhhHHhhh--ccccCCCCcccCCCccccchh-hhhhhhhhHHHHHH
Q 008128 100 KRWREEWADTYK-WAYVDVKEGTARIFCSVCREY--GRKHRRNPYGNEGSRNMQMSA-LEEHNNSLLHKEAL 167 (577)
Q Consensus 100 ~~~~~~w~~~~~-~~~~~~~~g~~~~~~~~c~~~--~~~~~rn~~~~~~~~~~~~~a-l~~h~~~~~h~~a~ 167 (577)
|+-+-.|.+.++ |.- +++-...+||-.|.-+ +....-++|..+|=+|+.... +..|..+..|..|-
T Consensus 3 RrF~~~W~~~~~~WL~--YS~~~D~~fC~~C~lF~~~~~~~~~~f~~~Gf~nwk~~~~l~~H~~s~~H~~a~ 72 (90)
T smart00597 3 RRFQRSWFKQFPDWLE--YSVEKDKAFCKACYLFRPGRDGDSDLFVTEGFCSWNVERILKQHEVSKRHRNAF 72 (90)
T ss_pred ccccccccccCcchhe--eecccCcEEEEEEEeeccCCCCCcCcccccCcCcchhhhhHHhhcCCHHHHhHH
Confidence 445567888888 853 3334466999999966 445677889999999999876 99999999999986
No 162
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=92.38 E-value=0.58 Score=50.10 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=64.9
Q ss_pred CceEEEEecchHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCc
Q 008128 416 GLRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (577)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~-GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~ei 494 (577)
..||+|.|+||+|+..++.+.+. +..+++|.|.+ + .+++ . . .+..| . ..+...
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~-----~----~~~~---~---~---~~~v~----~----~~d~~e 56 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR-----G----AETL---D---T---ETPVY----A----VADDEK 56 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC-----c----HHHH---h---h---cCCcc----c----cCCHHH
Confidence 36999999999999999988764 79999999984 1 1111 1 0 11111 0 111112
Q ss_pred cccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHHHH
Q 008128 495 WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL 543 (577)
Q Consensus 495 l~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL 543 (577)
+..++|+++-|+ .+..+.+.+..+++.+.-+|.+--.-..-|+..+.|
T Consensus 57 ~l~~iDVViIct-Ps~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~l 104 (324)
T TIGR01921 57 HLDDVDVLILCM-GSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVM 104 (324)
T ss_pred hccCCCEEEEcC-CCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHH
Confidence 336799999995 556678888788888888998843211234554444
No 163
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.31 E-value=0.19 Score=50.06 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=31.0
Q ss_pred CCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEE
Q 008128 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaIS 446 (577)
.+++|++|+|.|.|.||..-++.|.+.|++|+-|+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvs 39 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIA 39 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence 36899999999999999999999999999965444
No 164
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.26 E-value=0.19 Score=48.89 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=45.5
Q ss_pred eEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCH--HhHhHHHHHHhhcCcccc--cccccCCceEeCCCC
Q 008128 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDY--MKISFLRDIKSQQRSLRD--YSKTYARSKYYDEAK 493 (577)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~--e~L~~l~~~k~~~g~l~~--y~~~~p~a~~i~~~e 493 (577)
+|+|.|.|.+|...|..+...|.. |.+.|. |++.++. +.+...++....++.+.. .........+.++-+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~-----~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~ 74 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYE-VTLYDR-----SPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLE 74 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSE-EEEE-S-----SHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGG
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCc-EEEEEC-----ChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHH
Confidence 689999999999999999999999 566666 4443321 111111111112233221 000011223333322
Q ss_pred ccccccceeecCCcccccc
Q 008128 494 PWNERCDVAFPCASQNEID 512 (577)
Q Consensus 494 il~~~cDIlIPcA~~n~It 512 (577)
-+. +||+.|.|..++.--
T Consensus 75 ~~~-~adlViEai~E~l~~ 92 (180)
T PF02737_consen 75 EAV-DADLVIEAIPEDLEL 92 (180)
T ss_dssp GGC-TESEEEE-S-SSHHH
T ss_pred HHh-hhheehhhccccHHH
Confidence 233 999999999876533
No 165
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=92.18 E-value=2.6 Score=43.89 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHH-HHhhcC
Q 008128 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRD-IKSQQR 474 (577)
Q Consensus 396 G~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~-~k~~~g 474 (577)
++|.+.+++ ..+.++++++++|.|.|-.|+.++..|.+.|++-|.|.+. +++ ..+++..+.+ +.+...
T Consensus 110 ~~G~~~~l~----~~~~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R-----~~~--~~~~a~~l~~~l~~~~~ 178 (289)
T PRK12548 110 GLGFVRNLR----EHGVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNI-----KDD--FYERAEQTAEKIKQEVP 178 (289)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeC-----Cch--HHHHHHHHHHHHhhcCC
Confidence 667666665 3355789999999999999999999999999986777776 221 0122222222 111111
Q ss_pred cccccccccCCceEeCCC-Cc--cccccceeecCCccccc---chh---hHhhhhccCceEEEecCCCCCCHHHHHHHHh
Q 008128 475 SLRDYSKTYARSKYYDEA-KP--WNERCDVAFPCASQNEI---DQS---DAINLVNSGCRILVEGSNMPCTPEAVDVLKK 545 (577)
Q Consensus 475 ~l~~y~~~~p~a~~i~~~-ei--l~~~cDIlIPcA~~n~I---t~e---nA~~l~~~~akiVvEgAN~p~T~eA~~iL~~ 545 (577)
.+.- ....++.. ++ .-..+||+|=|+.-+.- +.. ....| . +-.+|.+-.-.|....-.+.-++
T Consensus 179 ~~~~------~~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l-~-~~~~v~D~vY~P~~T~ll~~A~~ 250 (289)
T PRK12548 179 ECIV------NVYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVF-R-KDLVVADTVYNPKKTKLLEDAEA 250 (289)
T ss_pred Ccee------EEechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhc-C-CCCEEEEecCCCCCCHHHHHHHH
Confidence 1000 00001111 11 11257999977753321 111 11223 2 34688999888854334455577
Q ss_pred CCcEEecch
Q 008128 546 ANVLIAPAM 554 (577)
Q Consensus 546 rGI~viPD~ 554 (577)
+|..++.+.
T Consensus 251 ~G~~~~~G~ 259 (289)
T PRK12548 251 AGCKTVGGL 259 (289)
T ss_pred CCCeeeCcH
Confidence 787766554
No 166
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=92.17 E-value=0.84 Score=48.86 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=62.4
Q ss_pred ceEEEEecchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHh--hcCcccccccccC--CceEeCC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKS--QQRSLRDYSKTYA--RSKYYDE 491 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e-~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~--~~g~l~~y~~~~p--~a~~i~~ 491 (577)
.||+|.|+|.+|+.+++.+.+ .+..+++|+|++ + + ....+.+... ..+.+......+. +......
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~-----~---~--~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~ 71 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK-----P---D--YEARVAVEKGYPLYVADPEREKAFEEAGIPVAGT 71 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC-----h---H--HHHHHHHhcCCCccccCccccccccCCceEEcCC
Confidence 489999999999999998875 578999999963 2 1 1111111100 0000000000011 1111111
Q ss_pred -CCccccccceeecCCcccccchhhHhhhhccCceEEEecC
Q 008128 492 -AKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (577)
Q Consensus 492 -~eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (577)
++++ .++|+++-|+ ....+.+++...++.|+++|.-|.
T Consensus 72 ~~el~-~~vDVVIdaT-~~~~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 72 IEDLL-EKADIVVDAT-PGGVGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred hhHhh-ccCCEEEECC-CchhhHHHHHHHHHCCCEEEEcCC
Confidence 2233 4799999998 556888999988888999999875
No 167
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.17 E-value=0.65 Score=38.58 Aligned_cols=49 Identities=31% Similarity=0.456 Sum_probs=38.1
Q ss_pred eEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHH
Q 008128 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDI 469 (577)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~ 469 (577)
+|+|.|.|.+|.-+|..|.+.|.+ |++.+....+. ..+|.+....+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~-vtli~~~~~~~--~~~~~~~~~~~~~~ 49 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKE-VTLIERSDRLL--PGFDPDAAKILEEY 49 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE-EEEEESSSSSS--TTSSHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcE-EEEEeccchhh--hhcCHHHHHHHHHH
Confidence 689999999999999999999999 57777777666 56776554444443
No 168
>PRK08618 ornithine cyclodeaminase; Validated
Probab=92.10 E-value=2.2 Score=45.22 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=67.6
Q ss_pred CCceEEEEecchHHHHHHHHHH-HCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCC-C
Q 008128 415 KGLRCVVSGSGKIAMHVLEKLI-AYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-A 492 (577)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~-e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~-~ 492 (577)
..+++.|.|.|..|+..++.+. ..+.+-|.|.|. + .++...+.+.......+ ....+++ +
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r-----~-----~~~a~~~~~~~~~~~~~--------~~~~~~~~~ 187 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR-----T-----FEKAYAFAQEIQSKFNT--------EIYVVNSAD 187 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC-----C-----HHHHHHHHHHHHHhcCC--------cEEEeCCHH
Confidence 5679999999999998887765 468888888887 2 23332222211111001 1111222 1
Q ss_pred CccccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHH-HHHHhCCcEEe
Q 008128 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAV-DVLKKANVLIA 551 (577)
Q Consensus 493 eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~-~iL~~rGI~vi 551 (577)
+.. .++||++=|+... +..-. .-++.++.+++=|++.|--.|.. +++.+...+|+
T Consensus 188 ~~~-~~aDiVi~aT~s~--~p~i~-~~l~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvv 243 (325)
T PRK08618 188 EAI-EEADIIVTVTNAK--TPVFS-EKLKKGVHINAVGSFMPDMQELPSEAIARANKVVV 243 (325)
T ss_pred HHH-hcCCEEEEccCCC--CcchH-HhcCCCcEEEecCCCCcccccCCHHHHhhCCEEEE
Confidence 222 4799999877643 22222 33467999999999999655554 44554444443
No 169
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=92.04 E-value=0.62 Score=52.04 Aligned_cols=114 Identities=14% Similarity=0.042 Sum_probs=66.9
Q ss_pred EEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcC-cccccccccCCceEeCCCCccc-
Q 008128 419 CVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR-SLRDYSKTYARSKYYDEAKPWN- 496 (577)
Q Consensus 419 VaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g-~l~~y~~~~p~a~~i~~~eil~- 496 (577)
|.|.|.|++|..+|+.|.+.|.+| .+.|. +.+++..+.+.. ..+ .+..+ . +..++..
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V-~v~dr----------t~~~~~~l~~~~-~~g~~~~~~----~-----s~~e~v~~ 60 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTV-SVYNR----------TPEKTDEFLAEH-AKGKKIVGA----Y-----SIEEFVQS 60 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeE-EEEeC----------CHHHHHHHHhhc-cCCCCceec----C-----CHHHHHhh
Confidence 679999999999999999999984 45554 233432222110 001 01110 0 1112221
Q ss_pred -cccceeecCCcccccchhhHhhhhc--cCceEEEecCCC-C-CCHHHHHHHHhCCcEEecc
Q 008128 497 -ERCDVAFPCASQNEIDQSDAINLVN--SGCRILVEGSNM-P-CTPEAVDVLKKANVLIAPA 553 (577)
Q Consensus 497 -~~cDIlIPcA~~n~It~enA~~l~~--~~akiVvEgAN~-p-~T~eA~~iL~~rGI~viPD 553 (577)
.+||+++-|........+....|.. ..=++|+.+.|. | .|.+..+.|+++||.|+--
T Consensus 61 l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvda 122 (467)
T TIGR00873 61 LERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGS 122 (467)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcC
Confidence 2588877776654444444444432 133699999994 3 4555667799999988743
No 170
>PLN00203 glutamyl-tRNA reductase
Probab=92.02 E-value=0.99 Score=51.20 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=73.2
Q ss_pred HHHHHHHHHH-HHcCC-CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCc
Q 008128 398 GLVFFAQLIL-ADMNK-ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS 475 (577)
Q Consensus 398 GV~~~~~~~l-~~~g~-~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~ 475 (577)
+|.+++-++. +.++. ++.+++|.|.|.|.+|..+++.|...|++-|.|.+.+ .+++..+. +..+.
T Consensus 246 Sv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs----------~era~~La---~~~~g 312 (519)
T PLN00203 246 SVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS----------EERVAALR---EEFPD 312 (519)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC----------HHHHHHHH---HHhCC
Confidence 4444443444 44453 5999999999999999999999999998657777652 22322222 11111
Q ss_pred ccccccccCCceEeCCCCcc--ccccceeecCC--cccccchhhHhhhhcc-----CceEEEecCCCC-CCHHH
Q 008128 476 LRDYSKTYARSKYYDEAKPW--NERCDVAFPCA--SQNEIDQSDAINLVNS-----GCRILVEGSNMP-CTPEA 539 (577)
Q Consensus 476 l~~y~~~~p~a~~i~~~eil--~~~cDIlIPcA--~~n~It~enA~~l~~~-----~akiVvEgAN~p-~T~eA 539 (577)
. ...+.+-+++. -.+|||+|-|+ ..-.|+.+..+.+.+. +-++++.-|.-. +.|+.
T Consensus 313 ~--------~i~~~~~~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v 378 (519)
T PLN00203 313 V--------EIIYKPLDEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACV 378 (519)
T ss_pred C--------ceEeecHhhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCcccc
Confidence 0 01111112221 24799999885 4677888888876432 235888887654 44443
No 171
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=91.87 E-value=0.26 Score=52.09 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=31.5
Q ss_pred CCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEE
Q 008128 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaIS 446 (577)
.++.|+||.|.|+|++|+.+|+.|...|.+|+++.
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~ 166 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWS 166 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 35789999999999999999999999999987664
No 172
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.86 E-value=0.41 Score=50.33 Aligned_cols=52 Identities=25% Similarity=0.317 Sum_probs=43.6
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
..+|..|++.. |++.+.+++||+|+|.| +.-||.-+|.+|.+.||+ |+++++
T Consensus 138 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~at-Vt~chs 190 (284)
T PRK14190 138 LPCTPHGILEL----LKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENAT-VTYCHS 190 (284)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEEeC
Confidence 46898887654 55668999999999999 788999999999999998 556665
No 173
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.85 E-value=2.4 Score=44.40 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=29.2
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEE
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaIS 446 (577)
..|.+|+|.|.|.||..++..+...|++|++++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~ 203 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLN 203 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence 468999999999999999999999999977654
No 174
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=91.82 E-value=0.89 Score=51.24 Aligned_cols=118 Identities=10% Similarity=0.016 Sum_probs=68.2
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCccc
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWN 496 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil~ 496 (577)
.+|.+.|.|++|...|+.|.+.|.+ |+|.|. +.++.+.+.+.....|. ..+ . .+ -+.+++..
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~-V~V~NR----------t~~k~~~l~~~~~~~Ga-~~~-~---~a--~s~~e~v~ 68 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFP-ISVYNR----------TTSKVDETVERAKKEGN-LPL-Y---GF--KDPEDFVL 68 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCe-EEEECC----------CHHHHHHHHHhhhhcCC-ccc-c---cC--CCHHHHHh
Confidence 3799999999999999999999998 556665 23343323321111111 000 0 00 01112221
Q ss_pred --cccceeecCCcccccchhhHhhhhc--cCceEEEecCCCC--CCHHHHHHHHhCCcEEec
Q 008128 497 --ERCDVAFPCASQNEIDQSDAINLVN--SGCRILVEGSNMP--CTPEAVDVLKKANVLIAP 552 (577)
Q Consensus 497 --~~cDIlIPcA~~n~It~enA~~l~~--~~akiVvEgAN~p--~T~eA~~iL~~rGI~viP 552 (577)
..||+++-|=.......+....|+. ..=++|+++.|.. .|.+..+.++++|+.|+=
T Consensus 69 ~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fld 130 (493)
T PLN02350 69 SIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLG 130 (493)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEe
Confidence 1488888775433332222222222 1346999999985 566667889999998873
No 175
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=91.75 E-value=0.83 Score=46.62 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=32.8
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
.|+.++|.|.|.|-+|..+++.|...|..=+++.|.+
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4678999999999999999999999998667888864
No 176
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.66 E-value=0.62 Score=47.47 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=32.4
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
.|++++|+|.|.|-+|+.+|+.|...|..=+.+.|.+
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3678899999999999999999999998767787753
No 177
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.50 E-value=3 Score=43.64 Aligned_cols=135 Identities=16% Similarity=0.043 Sum_probs=79.9
Q ss_pred chHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcC
Q 008128 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (577)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g 474 (577)
-|+|.+.++++ .+.++++++|+|.|.|-+|+.++-.|.+.|++-|.|.+. +.++...|.+....
T Consensus 110 D~~Gf~~~L~~----~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR----------~~~ka~~La~~~~~-- 173 (283)
T PRK14027 110 DVSGFGRGMEE----GLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADL----------DTSRAQALADVINN-- 173 (283)
T ss_pred CHHHHHHHHHh----cCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcC----------CHHHHHHHHHHHhh--
Confidence 36777777753 334678999999999999999999999999977888886 23344333322110
Q ss_pred cccccccccCC--ceEeCCCCc--cccccceeecCCcccccch----hhHhhhhccCceEEEecCCCCCCHHHHHHHHhC
Q 008128 475 SLRDYSKTYAR--SKYYDEAKP--WNERCDVAFPCASQNEIDQ----SDAINLVNSGCRILVEGSNMPCTPEAVDVLKKA 546 (577)
Q Consensus 475 ~l~~y~~~~p~--a~~i~~~ei--l~~~cDIlIPcA~~n~It~----enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~r 546 (577)
.++. ....+.... ....+||+|-|+.-+.-.. -+...+ ....+|.+-.-.|....-.+.-+++
T Consensus 174 -------~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~~~~~~~~~~~~l--~~~~~v~D~vY~P~~T~ll~~A~~~ 244 (283)
T PRK14027 174 -------AVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCL--TKDHWVGDVVYMPIETELLKAARAL 244 (283)
T ss_pred -------ccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCCCCCCCCCCHHHc--CCCcEEEEcccCCCCCHHHHHHHHC
Confidence 0111 001110000 1136899998776332111 111223 1456888998888543444556778
Q ss_pred CcEEecch
Q 008128 547 NVLIAPAM 554 (577)
Q Consensus 547 GI~viPD~ 554 (577)
|..++.+.
T Consensus 245 G~~~~~Gl 252 (283)
T PRK14027 245 GCETLDGT 252 (283)
T ss_pred CCEEEccH
Confidence 87776654
No 178
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.46 E-value=0.52 Score=43.11 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=29.3
Q ss_pred CceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
.+||+|.|.|-+|+.+|+.|...|..-+.+.|.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDD 34 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence 579999999999999999999999877888875
No 179
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=91.44 E-value=0.45 Score=47.69 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=32.9
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
.|+.++|+|.|.|-+|.++|+.|...|..-+.+.|.+
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4678899999999999999999999998778888764
No 180
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.43 E-value=1.7 Score=49.29 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=30.0
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
.+.+.+|+|.|+|.+|..++..+..+|++ |.+.|.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~-V~v~d~ 195 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAI-VRAFDT 195 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 34568999999999999999999999999 556665
No 181
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=91.39 E-value=0.3 Score=51.99 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=31.4
Q ss_pred CCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEE
Q 008128 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaIS 446 (577)
..|.|++|.|.|+|++|+.+|+.|...|.+|++..
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d 176 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYD 176 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence 46899999999999999999999999999977653
No 182
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.39 E-value=0.28 Score=53.82 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=32.3
Q ss_pred CCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEE
Q 008128 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaIS 446 (577)
+.+|.||||.|.|+|++|+.+|+.+...|.+|++..
T Consensus 146 ~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d 181 (409)
T PRK11790 146 SFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYD 181 (409)
T ss_pred cccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Confidence 346899999999999999999999999999987654
No 183
>PRK14851 hypothetical protein; Provisional
Probab=91.31 E-value=1.1 Score=52.37 Aligned_cols=125 Identities=8% Similarity=0.103 Sum_probs=69.0
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~ 492 (577)
.|++++|+|.|.|-||+.+++.|...|..-+.+.|.+- +++.-|+..-+ . +..+. +.+.++... +
T Consensus 40 kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~--ve~sNLNRQ~~---~-------~~~dv--G~~Kv~v~~-~ 104 (679)
T PRK14851 40 RLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ--FEPVNVNRQFG---A-------RVPSF--GRPKLAVMK-E 104 (679)
T ss_pred HHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE--ecccccccCcC---c-------ChhhC--CCHHHHHHH-H
Confidence 36789999999999999999999999987677887531 12221221000 0 00000 001111110 1
Q ss_pred CccccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHH---HHHHHHhCCcEEecch
Q 008128 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPE---AVDVLKKANVLIAPAM 554 (577)
Q Consensus 493 eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~e---A~~iL~~rGI~viPD~ 554 (577)
.+.++..++=|-+ ...-|+.+|+..+++ ++.+|+++...+.... -.+.-.++||.++=.-
T Consensus 105 ~l~~inP~~~I~~-~~~~i~~~n~~~~l~-~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 105 QALSINPFLEITP-FPAGINADNMDAFLD-GVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAG 167 (679)
T ss_pred HHHHhCCCCeEEE-EecCCChHHHHHHHh-CCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 1222222332222 234567788877765 7899999988764221 1233467788666443
No 184
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=91.16 E-value=1 Score=46.36 Aligned_cols=107 Identities=15% Similarity=0.217 Sum_probs=59.8
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCC-CCcc
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AKPW 495 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~-~eil 495 (577)
++|.|.|+|++|...|+.|.+.|.+|+ +.|. + .+++. ...+ .+ ....+. +++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~-~~d~-------~---~~~~~---~~~~-~g-----------~~~~~~~~e~- 55 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VYDR-------N---PEAVA---EVIA-AG-----------AETASTAKAV- 55 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEE-EEcC-------C---HHHHH---HHHH-CC-----------CeecCCHHHH-
Confidence 579999999999999999999998864 4454 2 22221 1111 11 111111 122
Q ss_pred ccccceeecCCcccccchhh-------HhhhhccCceEEEecCCCC-C-CHHHHHHHHhCCcEEec
Q 008128 496 NERCDVAFPCASQNEIDQSD-------AINLVNSGCRILVEGSNMP-C-TPEAVDVLKKANVLIAP 552 (577)
Q Consensus 496 ~~~cDIlIPcA~~n~It~en-------A~~l~~~~akiVvEgAN~p-~-T~eA~~iL~~rGI~viP 552 (577)
-.+||++|-|.......... .+.+ +.+ ++|+.-.+.. . +.+..+.+.++|+.++.
T Consensus 56 ~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~-~~g-~iiid~st~~~~~~~~l~~~~~~~g~~~~d 119 (296)
T PRK11559 56 AEQCDVIITMLPNSPHVKEVALGENGIIEGA-KPG-TVVIDMSSIAPLASREIAAALKAKGIEMLD 119 (296)
T ss_pred HhcCCEEEEeCCCHHHHHHHHcCcchHhhcC-CCC-cEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 24799999987643322211 1222 222 5666655444 2 23445677888876643
No 185
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=91.13 E-value=0.3 Score=52.26 Aligned_cols=118 Identities=22% Similarity=0.266 Sum_probs=67.2
Q ss_pred EEEEecchHHHHHHHHHHHCCCe-EEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCC---CCc
Q 008128 419 CVVSGSGKIAMHVLEKLIAYGAI-PVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE---AKP 494 (577)
Q Consensus 419 VaIQGfGNVG~~aA~~L~e~GAk-VVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~---~ei 494 (577)
|.|.|.|.||+.+++.|.+.+-. =|.|+|. +.+++..+.+.. ....+. ...++- +++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r----------~~~~~~~~~~~~-~~~~~~--------~~~~d~~~~~~l 61 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR----------NPEKAERLAEKL-LGDRVE--------AVQVDVNDPESL 61 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEES----------SHHHHHHHHT---TTTTEE--------EEE--TTTHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC----------CHHHHHHHHhhc-ccccee--------EEEEecCCHHHH
Confidence 67899999999999999988753 4778886 344442222110 111111 111111 112
Q ss_pred --cccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHH---HHHHHhCCcEEecchhcccc
Q 008128 495 --WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEA---VDVLKKANVLIAPAMAAGAG 559 (577)
Q Consensus 495 --l~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA---~~iL~~rGI~viPD~~aNAG 559 (577)
+-.+||++|-|+... .+..-++..++.++.+|= -+. .+.+. ++..+++|+.++++.=.+.|
T Consensus 62 ~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD-~~~--~~~~~~~l~~~a~~~g~~~l~~~G~~PG 127 (386)
T PF03435_consen 62 AELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVD-TSY--VTEEMLALDEEAKEAGVTALPGCGFDPG 127 (386)
T ss_dssp HHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEE-SS---HHHHHHHCHHHHHHTTSEEE-S-BTTTB
T ss_pred HHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeec-cch--hHHHHHHHHHHHHhhCCEEEeCcccccc
Confidence 234899999999766 666677777778999887 111 12222 35667899999998766554
No 186
>PRK07680 late competence protein ComER; Validated
Probab=91.06 E-value=0.9 Score=46.49 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=63.6
Q ss_pred eEEEEecchHHHHHHHHHHHCCC---eEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCc
Q 008128 418 RCVVSGSGKIAMHVLEKLIAYGA---IPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (577)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GA---kVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~ei 494 (577)
+|.|.|.|++|..+++.|.+.|. ..|.+.|. +.+++. ...+. +++.+...+..-
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r----------~~~~~~---~~~~~----------~~g~~~~~~~~~ 58 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR----------TPAKAY---HIKER----------YPGIHVAKTIEE 58 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC----------CHHHHH---HHHHH----------cCCeEEECCHHH
Confidence 68999999999999999998884 23566665 122221 11111 122222222111
Q ss_pred cccccceeecCCcccccchhhHhhhhc--cCceEEEecCCCCCCHHHHHHHHhCCcEEecchh
Q 008128 495 WNERCDVAFPCASQNEIDQSDAINLVN--SGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMA 555 (577)
Q Consensus 495 l~~~cDIlIPcA~~n~It~enA~~l~~--~~akiVvEgAN~p~T~eA~~iL~~rGI~viPD~~ 555 (577)
+-.+||++|-|.....+ .+-.+.|.. ..-++|+--+|+-...+..+.+..+.+.++|...
T Consensus 59 ~~~~aDiVilav~p~~~-~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~~~~~r~~p~~~ 120 (273)
T PRK07680 59 VISQSDLIFICVKPLDI-YPLLQKLAPHLTDEHCLVSITSPISVEQLETLVPCQVARIIPSIT 120 (273)
T ss_pred HHHhCCEEEEecCHHHH-HHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCEEEECCChH
Confidence 23479999998865443 232333321 1234777777654333344555555678888643
No 187
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.94 E-value=0.73 Score=48.42 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=44.0
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCCCceEEEEecc-hHHHHHHHHHHHCCCeEEEEEcC
Q 008128 391 RTEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 391 r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfG-NVG~~aA~~L~e~GAkVVaISDs 448 (577)
-..+|..||+.. |++.+.+++||+|+|.|-+ .||.-+|.+|.+.||. |+++.+
T Consensus 136 ~~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~At-Vti~hs 189 (281)
T PRK14183 136 FVPCTPLGVMEL----LEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANAT-VDICHI 189 (281)
T ss_pred CCCCcHHHHHHH----HHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCE-EEEeCC
Confidence 357898888654 5566899999999999965 8999999999999998 467776
No 188
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.87 E-value=0.37 Score=46.00 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=26.6
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaI 445 (577)
.+...+|+|.|.|+||..+++.|..+|++++.+
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~ 49 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVP 49 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEec
Confidence 355689999999999999999999999996654
No 189
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=90.58 E-value=4.9 Score=45.17 Aligned_cols=74 Identities=23% Similarity=0.174 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHc-C--CCCCCceEEEEecchHHHHHHHHHHHC-----CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHH
Q 008128 398 GLVFFAQLILADM-N--KELKGLRCVVSGSGKIAMHVLEKLIAY-----GAIPVSVSDAKGYLVDEDGFDYMKISFLRDI 469 (577)
Q Consensus 398 GV~~~~~~~l~~~-g--~~l~GkrVaIQGfGNVG~~aA~~L~e~-----GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~ 469 (577)
.+-.|+++-|... + .+.+.++|+|=|||-+|+.+++.+.+. +.++|+|-+..+-+ -|++.+..|+++
T Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~-----~d~~~~ayLLky 180 (477)
T PRK08289 106 DVEAFVAEELADAVGGADDIEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSE-----GDLEKRASLLRR 180 (477)
T ss_pred cHHHHHHHHHhhhhcCCCCCCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCC-----CCHHHHHHHhhh
Confidence 4556676666543 2 236678999999999999999998864 57899998764422 266777677776
Q ss_pred HhhcCcc
Q 008128 470 KSQQRSL 476 (577)
Q Consensus 470 k~~~g~l 476 (577)
-..+|.+
T Consensus 181 DSvhG~f 187 (477)
T PRK08289 181 DSVHGPF 187 (477)
T ss_pred hcCCCCC
Confidence 5555654
No 190
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=90.44 E-value=0.35 Score=51.37 Aligned_cols=34 Identities=12% Similarity=0.230 Sum_probs=30.6
Q ss_pred CCCCCCceEEEEecchHHHHHHHHHH-HCCCeEEE
Q 008128 411 NKELKGLRCVVSGSGKIAMHVLEKLI-AYGAIPVS 444 (577)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aA~~L~-e~GAkVVa 444 (577)
+.+|.|+|+.|.|+|++|+.+|+.|. ..|.+|++
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~ 174 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILY 174 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEE
Confidence 45799999999999999999999997 89999764
No 191
>PRK07340 ornithine cyclodeaminase; Validated
Probab=90.38 E-value=3.6 Score=43.32 Aligned_cols=114 Identities=14% Similarity=0.079 Sum_probs=69.2
Q ss_pred CCCceEEEEecchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e-~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~ 492 (577)
...+++.|.|.|..|+..++.+.. .+.+-|.|.+. +.++...+.+.....+ .....-+.+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r----------~~~~a~~~a~~~~~~~---------~~~~~~~~~ 183 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR----------TAASAAAFCAHARALG---------PTAEPLDGE 183 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC----------CHHHHHHHHHHHHhcC---------CeeEECCHH
Confidence 467899999999999999999875 67666777776 2333322222111100 011111111
Q ss_pred CccccccceeecCCcc--cccchhhHhhhhccCceEEEecCCCCCCHHHH-HHHHhCCcEEecc
Q 008128 493 KPWNERCDVAFPCASQ--NEIDQSDAINLVNSGCRILVEGSNMPCTPEAV-DVLKKANVLIAPA 553 (577)
Q Consensus 493 eil~~~cDIlIPcA~~--n~It~enA~~l~~~~akiVvEgAN~p~T~eA~-~iL~~rGI~viPD 553 (577)
+.. .+|||++=|+.. ..++. . ++.++.+++=|++.|-..|.+ ++|... -+|+-|
T Consensus 184 ~av-~~aDiVitaT~s~~Pl~~~----~-~~~g~hi~~iGs~~p~~~El~~~~~~~a-~v~vD~ 240 (304)
T PRK07340 184 AIP-EAVDLVVTATTSRTPVYPE----A-ARAGRLVVAVGAFTPDMAELAPRTVRGS-RLYVDD 240 (304)
T ss_pred HHh-hcCCEEEEccCCCCceeCc----c-CCCCCEEEecCCCCCCcccCCHHHHhhC-eEEEcC
Confidence 222 489999988764 44443 1 356899999999999777765 344444 334433
No 192
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=90.20 E-value=0.79 Score=45.27 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=32.9
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
.|+.++|.|.|.|.+|..+++.|...|..-+++.|.+
T Consensus 18 ~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 18 RLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4678899999999999999999999998778888864
No 193
>PLN02306 hydroxypyruvate reductase
Probab=90.18 E-value=0.4 Score=52.30 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=30.9
Q ss_pred CCCCCCceEEEEecchHHHHHHHHHH-HCCCeEEEE
Q 008128 411 NKELKGLRCVVSGSGKIAMHVLEKLI-AYGAIPVSV 445 (577)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aA~~L~-e~GAkVVaI 445 (577)
+.++.|+||.|.|+|++|+.+|+.|. ..|.+|++.
T Consensus 160 g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~ 195 (386)
T PLN02306 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195 (386)
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEE
Confidence 45789999999999999999999985 789997654
No 194
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=90.02 E-value=1.7 Score=47.42 Aligned_cols=125 Identities=10% Similarity=0.189 Sum_probs=68.6
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcC-----cccccccccCCceEe-C
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR-----SLRDYSKTYARSKYY-D 490 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g-----~l~~y~~~~p~a~~i-~ 490 (577)
++|+|.|.|.||..+|..+. .|..|+ +.|. |.+++..+ ++... .+.+.... ...... +
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~Vi-gvD~----------d~~kv~~l---~~g~~~~~e~~l~~~l~~-~~~~l~~t 64 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVV-ALDI----------LPSRVAML---NDRISPIVDKEIQQFLQS-DKIHFNAT 64 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEE-EEEC----------CHHHHHHH---HcCCCCCCCcCHHHHHHh-CCCcEEEe
Confidence 36999999999999997776 488854 5554 23333222 11100 01100000 011111 1
Q ss_pred CC-CccccccceeecCCcccc------cchhh-------HhhhhccCceEEEecCCCC-CCHHHHHHHHhCCcEEecchh
Q 008128 491 EA-KPWNERCDVAFPCASQNE------IDQSD-------AINLVNSGCRILVEGSNMP-CTPEAVDVLKKANVLIAPAMA 555 (577)
Q Consensus 491 ~~-eil~~~cDIlIPcA~~n~------It~en-------A~~l~~~~akiVvEgAN~p-~T~eA~~iL~~rGI~viPD~~ 555 (577)
.+ .-.-.+||++|-|-.+.. .+-.. +..+ +.+.-+|.+..=-| +|.+-.+.+.+.|+.+.|..+
T Consensus 65 ~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~-~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l 143 (388)
T PRK15057 65 LDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVEI-NPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFL 143 (388)
T ss_pred cchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHhc-CCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccc
Confidence 11 112357999999877551 11111 1222 34666777776666 555666778888999999987
Q ss_pred ccc
Q 008128 556 AGA 558 (577)
Q Consensus 556 aNA 558 (577)
...
T Consensus 144 ~~G 146 (388)
T PRK15057 144 REG 146 (388)
T ss_pred cCC
Confidence 543
No 195
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=89.97 E-value=0.87 Score=46.74 Aligned_cols=102 Identities=20% Similarity=0.228 Sum_probs=61.0
Q ss_pred ceEEEEecchHHHHHHHHHHHC--CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCc
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAY--GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~--GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~ei 494 (577)
.+|.|+|+|+.|..+.+++.+- .++.+++.|. +.++. ++.-. ++. .-...+-++.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~----------~~ek~---~~~~~---~~~-------~~~~s~ide~ 57 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDR----------DEEKA---KELEA---SVG-------RRCVSDIDEL 57 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecC----------CHHHH---HHHHh---hcC-------CCccccHHHH
Confidence 3689999999999999988753 5888999887 22232 21111 111 1011111333
Q ss_pred cccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHHHH
Q 008128 495 WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL 543 (577)
Q Consensus 495 l~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL 543 (577)
. .+.|+++.||.++.+ .+-+.+++++++.+|+=.--.-..++-.+-|
T Consensus 58 ~-~~~DlvVEaAS~~Av-~e~~~~~L~~g~d~iV~SVGALad~~l~erl 104 (255)
T COG1712 58 I-AEVDLVVEAASPEAV-REYVPKILKAGIDVIVMSVGALADEGLRERL 104 (255)
T ss_pred h-hccceeeeeCCHHHH-HHHhHHHHhcCCCEEEEechhccChHHHHHH
Confidence 3 688999999998877 4555666677766666332222244444333
No 196
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=89.86 E-value=0.62 Score=46.56 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=32.9
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
.|+.++|+|.|.|-+|..+|+.|...|..=+.+.|.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4678899999999999999999999998767888864
No 197
>PRK14852 hypothetical protein; Provisional
Probab=89.85 E-value=1.5 Score=53.01 Aligned_cols=131 Identities=11% Similarity=0.060 Sum_probs=73.0
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~ 492 (577)
.|+..+|+|.|.|-||..+|+.|...|..-+.|.|-+- ++..-|+..-+ .. ...+. .+.++.. .+
T Consensus 329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~--Ve~SNLNRQ~l---~~----~~dIG-----~~Kaeva-a~ 393 (989)
T PRK14852 329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA--YSPVNLNRQYG---AS----IASFG-----RGKLDVM-TE 393 (989)
T ss_pred HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE--ecccccccccC---CC----hhhCC-----ChHHHHH-HH
Confidence 57889999999999999999999999987788887531 11111111000 00 00000 0111100 01
Q ss_pred CccccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHH---HHHHhCCcEEecchhccccc
Q 008128 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAV---DVLKKANVLIAPAMAAGAGG 560 (577)
Q Consensus 493 eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~---~iL~~rGI~viPD~~aNAGG 560 (577)
.+.++..+|=|-+- ..-|+.+|+..+++ ++-+|+++.+++.+.... ....++||.++=.-+.--+|
T Consensus 394 ~l~~INP~v~I~~~-~~~I~~en~~~fl~-~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g 462 (989)
T PRK14852 394 RALSVNPFLDIRSF-PEGVAAETIDAFLK-DVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYSC 462 (989)
T ss_pred HHHHHCCCCeEEEE-ecCCCHHHHHHHhh-CCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccCe
Confidence 12223333333322 22367888888765 799999999887653322 23367788766544433333
No 198
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=89.73 E-value=0.82 Score=47.25 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=54.8
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK 493 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~e 493 (577)
..|.+|+|.|.|.||..+++.+...|+++|.++|. ++ +++ ...+. ... ++..+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~-----~~-----~rl---~~a~~-~~~-------------i~~~~ 195 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET-----NP-----RRR---DGATG-YEV-------------LDPEK 195 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC-----CH-----HHH---Hhhhh-ccc-------------cChhh
Confidence 36789999999999999999999999997777665 22 222 11110 000 11110
Q ss_pred ccccccceeecCCcccccchhhHhhhhccCceEEEecC
Q 008128 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (577)
Q Consensus 494 il~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (577)
.....+|+++.|+.... +-+.+-++++.+.++|.=|.
T Consensus 196 ~~~~g~Dvvid~~G~~~-~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 196 DPRRDYRAIYDASGDPS-LIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ccCCCCCEEEECCCCHH-HHHHHHHhhhcCcEEEEEee
Confidence 01235899999886432 23444455566777775553
No 199
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.57 E-value=1.5 Score=48.20 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=61.4
Q ss_pred CCCceEEEEec----------chHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCccccccccc
Q 008128 414 LKGLRCVVSGS----------GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTY 483 (577)
Q Consensus 414 l~GkrVaIQGf----------GNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~ 483 (577)
++||+|+|-|. -..+..+++.|.+.|++|+ +|||....-.. . .+
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~--------aYDP~a~~~~~--------~----------~~ 361 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVI--------AYDPVAMENAF--------R----------NF 361 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEE--------EECchhhHHHH--------h----------cC
Confidence 99999999995 4567788999999999986 47887542111 0 12
Q ss_pred CCceEeCCCCccccccceeecCCcccccchhhHhhhhccCceEEEecCCCC
Q 008128 484 ARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMP 534 (577)
Q Consensus 484 p~a~~i~~~eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p 534 (577)
|+.++.++.+-.-..||+++-+.--++.-.-+-..+ -.+.++|+.|-|..
T Consensus 362 ~~~~~~~~~~~~~~~aDaivi~tew~ef~~~d~~~~-~m~~~~v~DgRni~ 411 (414)
T COG1004 362 PDVELESDAEEALKGADAIVINTEWDEFRDLDFEKL-LMKTPVVIDGRNIF 411 (414)
T ss_pred CCceEeCCHHHHHhhCCEEEEeccHHHHhccChhhh-hccCCEEEeccccc
Confidence 334444433333457899998876555544333322 23778999988853
No 200
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=89.31 E-value=0.8 Score=49.71 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=60.0
Q ss_pred ceEEEEecchHHHHHHHHHHHC-----CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccc---------
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAY-----GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKT--------- 482 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~-----GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~--------- 482 (577)
.||.|=|||-+|+.+.+.+.+. ...||+|-|..+ |++.+..|+++-..+|.+..-++.
T Consensus 4 ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~--------~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~ 75 (361)
T PTZ00434 4 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMST--------NAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKT 75 (361)
T ss_pred eEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCC--------ChhheeeeeeeecCCCCcCCceeeccccccccc
Confidence 4899999999999999998874 478999988521 333333444443334433211100
Q ss_pred -----cCC--ceEe----CCCC-cc-ccccceeecCCcccccchhhHhhhhccCceEEEe
Q 008128 483 -----YAR--SKYY----DEAK-PW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVE 529 (577)
Q Consensus 483 -----~p~--a~~i----~~~e-il-~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvE 529 (577)
..+ ...+ ++.+ +| +..+|+++.|+.. -.+.+.|..-++.|||=|+=
T Consensus 76 ~~~l~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~-f~t~~~a~~Hl~~GAKkVii 134 (361)
T PTZ00434 76 DDVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGL-FTDKLAAEGHLKGGAKKVVI 134 (361)
T ss_pred CCEEEECCEEEEEEEecCChhhCchhhcCCCEEEeCcee-eccHHHHhhhhhcCCCEEEE
Confidence 001 1111 1222 36 4688888888753 34556665555666655543
No 201
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.28 E-value=1.2 Score=41.07 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=27.8
Q ss_pred eEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
+|.|.|.|-+|..+++.|...|..=+.+.|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999998657777753
No 202
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=88.92 E-value=1.5 Score=45.47 Aligned_cols=117 Identities=18% Similarity=0.316 Sum_probs=73.8
Q ss_pred eEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhc----CcccccccccCCceEeCCCC
Q 008128 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ----RSLRDYSKTYARSKYYDEAK 493 (577)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~----g~l~~y~~~~p~a~~i~~~e 493 (577)
++-++|.|.+|.++++.|...|..||+- |. |.+.+ .+.+... .++.+++..++ ++..
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~ghdvV~y-D~----------n~~av---~~~~~~ga~~a~sl~el~~~L~-----~pr~ 62 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGHDVVGY-DV----------NQTAV---EELKDEGATGAASLDELVAKLS-----APRI 62 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCCeEEEE-cC----------CHHHH---HHHHhcCCccccCHHHHHHhcC-----CCcE
Confidence 4668999999999999999999998752 32 23333 2222221 12333222211 2223
Q ss_pred ccccccceeecCC-cccccchhhHhhhhccCceEEEecCCCCC--CHHHHHHHHhCCcEEecchhcccccee
Q 008128 494 PWNERCDVAFPCA-SQNEIDQSDAINLVNSGCRILVEGSNMPC--TPEAVDVLKKANVLIAPAMAAGAGGVR 562 (577)
Q Consensus 494 il~~~cDIlIPcA-~~n~It~enA~~l~~~~akiVvEgAN~p~--T~eA~~iL~~rGI~viPD~~aNAGGVi 562 (577)
+| +.+|++ +.+.+-.+-+..| +.--+|++|.|.-. |..-.+.|+++||.++- +--+|||.
T Consensus 63 vW-----lMvPag~it~~vi~~la~~L--~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD--~GTSGG~~ 125 (300)
T COG1023 63 VW-----LMVPAGDITDAVIDDLAPLL--SAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLD--VGTSGGVW 125 (300)
T ss_pred EE-----EEccCCCchHHHHHHHHhhc--CCCCEEEECCccchHHHHHHHHHHHhcCCeEEe--ccCCCCch
Confidence 34 578887 5555555666666 34579999999875 44445779999998873 45677765
No 203
>PRK10206 putative oxidoreductase; Provisional
Probab=88.87 E-value=0.61 Score=49.59 Aligned_cols=109 Identities=16% Similarity=0.208 Sum_probs=58.6
Q ss_pred ceEEEEecchHHH-HHHHHH-HH-CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeC-CC
Q 008128 417 LRCVVSGSGKIAM-HVLEKL-IA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD-EA 492 (577)
Q Consensus 417 krVaIQGfGNVG~-~aA~~L-~e-~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~-~~ 492 (577)
.||.|.|+|+.+. .-+..+ .. .+..+++|+|. +++ + .+..+. |+...+.+ -+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~-----~~~-----~----~~~~~~----------~~~~~~~~~~~ 57 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRR-----HAK-----P----EEQAPI----------YSHIHFTSDLD 57 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcC-----Chh-----H----HHHHHh----------cCCCcccCCHH
Confidence 4799999999775 223434 33 47899999997 221 1 011111 11111222 23
Q ss_pred Cccc-cccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHHH---HHhCCcEE
Q 008128 493 KPWN-ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDV---LKKANVLI 550 (577)
Q Consensus 493 eil~-~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~i---L~~rGI~v 550 (577)
++++ .++|+++=|+ .+..+.+.+.+.++.|..++||=-=..+..|++++ .+++|+.+
T Consensus 58 ell~~~~iD~V~I~t-p~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l 118 (344)
T PRK10206 58 EVLNDPDVKLVVVCT-HADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTV 118 (344)
T ss_pred HHhcCCCCCEEEEeC-CchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEE
Confidence 4453 4677777654 56667777777667777777763212223444433 34555544
No 204
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=88.87 E-value=2.8 Score=45.23 Aligned_cols=91 Identities=14% Similarity=0.260 Sum_probs=59.4
Q ss_pred CCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeC--CC
Q 008128 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYD--EA 492 (577)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~--~~ 492 (577)
.|++|+|.|+|-+|..+++++..+|++|++++-+ .+++...+++ |. + .++. +.
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~-----------~~K~e~a~~l----GA--d--------~~i~~~~~ 220 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRS-----------EEKLELAKKL----GA--D--------HVINSSDS 220 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCC-----------hHHHHHHHHh----CC--c--------EEEEcCCc
Confidence 5899999999999999999999999999888654 1232111211 11 0 0111 11
Q ss_pred Cc---cccccceeecCCcccccchhhHhhhhccCceEEEecCC
Q 008128 493 KP---WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (577)
Q Consensus 493 ei---l~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (577)
+. +...+|+.+-++. ..|-+++-++++.+-++|.=|.=
T Consensus 221 ~~~~~~~~~~d~ii~tv~--~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 221 DALEAVKEIADAIIDTVG--PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hhhHHhHhhCcEEEECCC--hhhHHHHHHHHhcCCEEEEECCC
Confidence 11 1112999999987 66777777777777777766643
No 205
>PRK14982 acyl-ACP reductase; Provisional
Probab=88.81 E-value=1.1 Score=48.26 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=43.5
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCceEEEEec-chHHHHHHHHHHH-CCCeEEEEEcC
Q 008128 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIA-YGAIPVSVSDA 448 (577)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~l~GkrVaIQGf-GNVG~~aA~~L~e-~GAkVVaISDs 448 (577)
.|.+-....++.+.+.++.++++++|.|.|. |.+|+.+++.|.+ .|.+-+.+.+.
T Consensus 133 ~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 133 HTAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred hHHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 3666666778888888888999999999998 8999999999986 46533445554
No 206
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=88.79 E-value=0.91 Score=50.02 Aligned_cols=51 Identities=10% Similarity=0.221 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 398 GLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 398 GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+|.+++-..++..-.++.|++|.|.|.|.+|..+++.|.+.|++-+.|+..
T Consensus 163 Sv~~~Av~la~~~~~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nR 213 (414)
T PRK13940 163 SVAFSAITLAKRQLDNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANR 213 (414)
T ss_pred CHHHHHHHHHHHHhcCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECC
Confidence 344444344444445689999999999999999999999999887889887
No 207
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=88.77 E-value=0.63 Score=46.77 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=34.6
Q ss_pred CCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
.+++|++|+|.|.|.||..=++.|.+.|++|+-+|+.
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence 4789999999999999999999999999999988886
No 208
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.72 E-value=1.6 Score=47.13 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=33.2
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
.+++++|+|.|.|-+|..+++.|...|..=+.+.|.+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4788999999999999999999999998778888864
No 209
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=88.31 E-value=0.7 Score=49.63 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=31.6
Q ss_pred CCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEc
Q 008128 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISD 447 (577)
..|+||||.|.|+|++|...|+.|...|.+|+...+
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r 47 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVR 47 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEEC
Confidence 358999999999999999999999999999765433
No 210
>PRK06046 alanine dehydrogenase; Validated
Probab=88.25 E-value=7.7 Score=41.15 Aligned_cols=112 Identities=14% Similarity=0.177 Sum_probs=67.4
Q ss_pred CCceEEEEecchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHH-HHhhcCcccccccccCCceEeCC-
Q 008128 415 KGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRD-IKSQQRSLRDYSKTYARSKYYDE- 491 (577)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e-~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~-~k~~~g~l~~y~~~~p~a~~i~~- 491 (577)
.-+++.|.|.|..|.+.++.|.. .+.+.|.|.|. ++ +....+.+ +++..+ + ..+..++
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r-----~~-----~~~~~~~~~~~~~~~-~--------~v~~~~~~ 188 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR-----TK-----SSAEKFVERMSSVVG-C--------DVTVAEDI 188 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECC-----CH-----HHHHHHHHHHHhhcC-c--------eEEEeCCH
Confidence 34699999999999999988874 57888988887 22 23222222 111101 0 1122222
Q ss_pred CCccccccceeecCCccc--ccchhhHhhhhccCceEEEecCCCCCCHHHHHHHHhCCcEEe
Q 008128 492 AKPWNERCDVAFPCASQN--EIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIA 551 (577)
Q Consensus 492 ~eil~~~cDIlIPcA~~n--~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI~vi 551 (577)
++.++ +||++=|+... .++.+. ++.++.+.+=|++.|-..|.+..+-++.-+|+
T Consensus 189 ~~~l~--aDiVv~aTps~~P~~~~~~----l~~g~hV~~iGs~~p~~~El~~~~~~~a~vvv 244 (326)
T PRK06046 189 EEACD--CDILVTTTPSRKPVVKAEW----IKEGTHINAIGADAPGKQELDPEILLRAKVVV 244 (326)
T ss_pred HHHhh--CCEEEEecCCCCcEecHHH----cCCCCEEEecCCCCCccccCCHHHHhCCcEEE
Confidence 33343 99999887643 333332 25589999999999976666544444443444
No 211
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.16 E-value=1.5 Score=46.30 Aligned_cols=52 Identities=25% Similarity=0.242 Sum_probs=42.9
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHH----CCCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIA----YGAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e----~GAkVVaISDs 448 (577)
..+|..||+.. |++.+.+++||+|+|.| +..||.-++.+|.+ .+|+ |+++++
T Consensus 137 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~At-Vt~~hs 193 (286)
T PRK14184 137 RPCTPAGVMTL----LERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANAT-VTVCHS 193 (286)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCE-EEEEeC
Confidence 47898888765 45568999999999999 77899999999998 7888 456665
No 212
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=88.13 E-value=3.6 Score=42.62 Aligned_cols=113 Identities=24% Similarity=0.269 Sum_probs=70.3
Q ss_pred CceEEEEecchHHH-HHHHHHHHCC--CeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEe-CC
Q 008128 416 GLRCVVSGSGKIAM-HVLEKLIAYG--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DE 491 (577)
Q Consensus 416 GkrVaIQGfGNVG~-~aA~~L~e~G--AkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i-~~ 491 (577)
-.||.|.|.|+.+. +.+..+.+.+ ..+++++|+ |.+++ .+..++.+- .+.. +-
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~----------~~~~a---~~~a~~~~~----------~~~~~~~ 59 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR----------DPERA---EAFAEEFGI----------AKAYTDL 59 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecC----------CHHHH---HHHHHHcCC----------CcccCCH
Confidence 36899999997774 4666777765 589999997 23332 223222221 1112 22
Q ss_pred CCcccc-ccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHHHH---HhCCcEEec
Q 008128 492 AKPWNE-RCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL---KKANVLIAP 552 (577)
Q Consensus 492 ~eil~~-~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL---~~rGI~viP 552 (577)
++++.. +.|+++=|+ .+..+.+.+.+-++.|..++||=-=..+..|++++. +++|+.+.-
T Consensus 60 ~~ll~~~~iD~V~Iat-p~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v 123 (342)
T COG0673 60 EELLADPDIDAVYIAT-PNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMV 123 (342)
T ss_pred HHHhcCCCCCEEEEcC-CChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceee
Confidence 455543 478887765 677788888888888999999964333445665433 566665543
No 213
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=88.12 E-value=1.6 Score=46.03 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=63.7
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHh-HhHHHHHHhhcCcccccccccCCceEeCCCCcc
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMK-ISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW 495 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~-L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil 495 (577)
.+|.+.|+|++|+..|..|.+.|.. |.+.|. +.++ ...+. .. +++..+...-.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~-v~v~~r----------~~~ka~~~~~----~~-----------Ga~~a~s~~ea 54 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHE-VTVYNR----------TPEKAAELLA----AA-----------GATVAASPAEA 54 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCE-EEEEeC----------ChhhhhHHHH----Hc-----------CCcccCCHHHH
Confidence 4799999999999999999999988 567775 2333 11111 11 22222211112
Q ss_pred ccccceeecCCc-----ccccchhh--HhhhhccCceEEEecCCCC-CCHHHHHHHHhCCcEEecc
Q 008128 496 NERCDVAFPCAS-----QNEIDQSD--AINLVNSGCRILVEGSNMP-CTPEAVDVLKKANVLIAPA 553 (577)
Q Consensus 496 ~~~cDIlIPcA~-----~n~It~en--A~~l~~~~akiVvEgAN~p-~T~eA~~iL~~rGI~viPD 553 (577)
-..|||+|-|=. ..++.+++ +..+ +.++-+|--....| .+.+..+.++++|+.++=-
T Consensus 55 a~~aDvVitmv~~~~~V~~V~~g~~g~~~~~-~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDA 119 (286)
T COG2084 55 AAEADVVITMLPDDAAVRAVLFGENGLLEGL-KPGAIVIDMSTISPETARELAAALAAKGLEFLDA 119 (286)
T ss_pred HHhCCEEEEecCCHHHHHHHHhCccchhhcC-CCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEec
Confidence 357888887644 22332211 1111 12444444445555 4566778899999988643
No 214
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=88.06 E-value=1.1 Score=47.19 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=44.1
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEecch-HHHHHHHHHHHCCCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGN-VG~~aA~~L~e~GAkVVaISDs 448 (577)
...|-+|++.. +++.+.++.|++++|+|-+| ||..++.+|...+++ |+|+.+
T Consensus 136 ~PCTp~gi~~l----l~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naT-VtvcHs 188 (283)
T COG0190 136 LPCTPAGIMTL----LEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANAT-VTVCHS 188 (283)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCE-EEEEcC
Confidence 47898887754 55668999999999999554 899999999999999 788887
No 215
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=87.95 E-value=10 Score=39.48 Aligned_cols=127 Identities=9% Similarity=0.104 Sum_probs=76.3
Q ss_pred chHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcC
Q 008128 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (577)
Q Consensus 395 TG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g 474 (577)
-++|.+.+++. .+.+ .+++|+|.|.|-.|+.++-.|.+.|++-|.|.+.+ .++...|.+.. +
T Consensus 106 D~~Gf~~~L~~----~~~~-~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~----------~~~a~~la~~~---~ 167 (272)
T PRK12550 106 DYIAIAKLLAS----YQVP-PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN----------EKTGKALAELY---G 167 (272)
T ss_pred CHHHHHHHHHh----cCCC-CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC----------HHHHHHHHHHh---C
Confidence 46777776653 3444 35799999999999999999999998778888872 23332222210 0
Q ss_pred cccccccccCCceEeCCCCccccccceeecCCcccccchh-------hHhhhhccCceEEEecCCCCCCHHHHHHHHhCC
Q 008128 475 SLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQS-------DAINLVNSGCRILVEGSNMPCTPEAVDVLKKAN 547 (577)
Q Consensus 475 ~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~~n~It~e-------nA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rG 547 (577)
+ .+ . ..+-...+||+|=|+.-..-... +...| + +..+|.+-.-.|....-.+.-+++|
T Consensus 168 ----~-------~~-~-~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l-~-~~~~v~D~vY~P~~T~ll~~A~~~G 232 (272)
T PRK12550 168 ----Y-------EW-R-PDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEI-D-AASVVFDVVALPAETPLIRYARARG 232 (272)
T ss_pred ----C-------cc-h-hhcccccCCEEEECCccccCCCCccccCCCCHHHc-C-CCCEEEEeecCCccCHHHHHHHHCc
Confidence 0 00 0 01112458999988763322110 11222 2 3468888888885434445557888
Q ss_pred cEEecch
Q 008128 548 VLIAPAM 554 (577)
Q Consensus 548 I~viPD~ 554 (577)
..++.+.
T Consensus 233 ~~~i~Gl 239 (272)
T PRK12550 233 KTVITGA 239 (272)
T ss_pred CeEeCCH
Confidence 8776654
No 216
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=87.94 E-value=0.7 Score=52.27 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=31.6
Q ss_pred CCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEE
Q 008128 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaI 445 (577)
+.+|.||||.|.|+|++|+.+|+.|...|.+|++.
T Consensus 135 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~ 169 (526)
T PRK13581 135 GVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAY 169 (526)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 45689999999999999999999999999997654
No 217
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=87.74 E-value=1.1 Score=44.41 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHH--HHCCCeEEEEEcC
Q 008128 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKL--IAYGAIPVSVSDA 448 (577)
Q Consensus 396 G~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L--~e~GAkVVaISDs 448 (577)
||=|.+.++.+-+.++.. ..++|+|.|.|++|..+++.+ .+.|.+++++.|.
T Consensus 65 gy~v~~l~~~~~~~l~~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~ 118 (213)
T PRK05472 65 GYNVEELLEFIEKILGLD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV 118 (213)
T ss_pred CeeHHHHHHHHHHHhCCC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC
Confidence 577777666666666655 567999999999999998864 3568999999987
No 218
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=87.67 E-value=0.74 Score=49.91 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=32.9
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
.|+..+|+|.|.|-+|..+++.|...|..-+.+.|.+
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3678899999999999999999999998668888865
No 219
>PRK05717 oxidoreductase; Validated
Probab=86.95 E-value=1.1 Score=44.48 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=31.0
Q ss_pred CCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 411 g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
..+++||+++|.| .|.+|+++|+.|.+.|++|+.+
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~ 40 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLA 40 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEE
Confidence 4678999999999 5999999999999999997654
No 220
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=86.93 E-value=2.2 Score=45.63 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=60.7
Q ss_pred ceEEEEec-chHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCc
Q 008128 417 LRCVVSGS-GKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (577)
Q Consensus 417 krVaIQGf-GNVG~~aA~~L~e~-GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~ei 494 (577)
++|+|.|. |.||+.+++.|.+. +.+++++++. .+.|-...+ . ...+... ....+-+.++.
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~-----~~~g~~l~~------~---~~~~~~~----~~~~~~~~~~~ 64 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR-----SSAGKPLSD------V---HPHLRGL----VDLVLEPLDPE 64 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc-----cccCcchHH------h---Ccccccc----cCceeecCCHH
Confidence 68999996 99999999999876 7899998884 122211111 0 1111110 01111111121
Q ss_pred cccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCC
Q 008128 495 WNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCT 536 (577)
Q Consensus 495 l~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T 536 (577)
...++|+++-|. .+....+.+..+.+.++++|==.+.....
T Consensus 65 ~~~~vD~Vf~al-P~~~~~~~v~~a~~aG~~VID~S~~fR~~ 105 (343)
T PRK00436 65 ILAGADVVFLAL-PHGVSMDLAPQLLEAGVKVIDLSADFRLK 105 (343)
T ss_pred HhcCCCEEEECC-CcHHHHHHHHHHHhCCCEEEECCcccCCC
Confidence 224699998866 55678888888877777666555555453
No 221
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.92 E-value=4.6 Score=42.36 Aligned_cols=125 Identities=16% Similarity=0.098 Sum_probs=66.3
Q ss_pred CceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCC-ceEeCC-CC
Q 008128 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYAR-SKYYDE-AK 493 (577)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~-a~~i~~-~e 493 (577)
.++|+|.|.|++|..+|..|.+.|..| .+.+. +.+.++.+.........+.+. ..+. ....+. .+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V-~~~~r----------~~~~~~~i~~~~~~~~~~~g~--~~~~~~~~~~~~~e 70 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPV-RLWAR----------RPEFAAALAAERENREYLPGV--ALPAELYPTADPEE 70 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeE-EEEeC----------CHHHHHHHHHhCcccccCCCC--cCCCCeEEeCCHHH
Confidence 358999999999999999999999885 44444 222322222211110001110 0111 222211 11
Q ss_pred ccccccceeecCCcccccchhhHhhhhccCceEEEecCCCCC-----CHHHHHHHHh---CCc--EEecchhcc
Q 008128 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPC-----TPEAVDVLKK---ANV--LIAPAMAAG 557 (577)
Q Consensus 494 il~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~-----T~eA~~iL~~---rGI--~viPD~~aN 557 (577)
. ..+||+++-|-....+ .+..+.+ +.++ +|+.-+|+-. +....+++.+ +++ +..|..+..
T Consensus 71 ~-~~~aD~Vi~~v~~~~~-~~v~~~l-~~~~-~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~ 140 (328)
T PRK14618 71 A-LAGADFAVVAVPSKAL-RETLAGL-PRAL-GYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEE 140 (328)
T ss_pred H-HcCCCEEEEECchHHH-HHHHHhc-CcCC-EEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHH
Confidence 1 2479999998877654 4444444 2233 5666677421 3344456655 554 445665554
No 222
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=86.78 E-value=1.1 Score=47.71 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=29.8
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
|+|++|.|.|+||+|...|+.|.+.|.+|+...+.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~ 35 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRK 35 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECc
Confidence 57999999999999999999999999876544443
No 223
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=86.76 E-value=0.88 Score=48.75 Aligned_cols=37 Identities=16% Similarity=0.370 Sum_probs=33.6
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
.|++++|+|.|.|-+|.++|+.|...|..-++|.|.+
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4788999999999999999999999998778888875
No 224
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=86.74 E-value=1.9 Score=44.51 Aligned_cols=106 Identities=13% Similarity=0.089 Sum_probs=57.2
Q ss_pred EEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCccccccc
Q 008128 421 VSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCD 500 (577)
Q Consensus 421 IQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil~~~cD 500 (577)
|.|.|++|..+|+.|.+.|.+| .+.|. +.+++..+. + .+ +...+...-.-.+||
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V-~v~dr----------~~~~~~~l~---~-~g-----------~~~~~s~~~~~~~ad 54 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPV-RVFDL----------FPDAVEEAV---A-AG-----------AQAAASPAEAAEGAD 54 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeE-EEEeC----------CHHHHHHHH---H-cC-----------CeecCCHHHHHhcCC
Confidence 4699999999999999999884 45554 123332221 1 11 111111011224789
Q ss_pred eeecCCcccccchhhH---hhhh---ccCceEEEecCC-CC-CCHHHHHHHHhCCcEEecc
Q 008128 501 VAFPCASQNEIDQSDA---INLV---NSGCRILVEGSN-MP-CTPEAVDVLKKANVLIAPA 553 (577)
Q Consensus 501 IlIPcA~~n~It~enA---~~l~---~~~akiVvEgAN-~p-~T~eA~~iL~~rGI~viPD 553 (577)
|+|-|-.......+-. ..+. ..+ ++|+.-.. .| ++.+..+.++++|+.|+--
T Consensus 55 vVil~vp~~~~~~~v~~g~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~~~vda 114 (288)
T TIGR01692 55 RVITMLPAGQHVISVYSGDEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGAVFMDA 114 (288)
T ss_pred EEEEeCCChHHHHHHHcCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEEC
Confidence 9888766433222111 1121 223 45555543 33 3445567788899988764
No 225
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.71 E-value=0.99 Score=48.57 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=32.7
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
.|+.++|.|.|.|-+|..+++.|...|..=+.+.|.+
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3678899999999999999999999998778888864
No 226
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.66 E-value=1.7 Score=45.98 Aligned_cols=52 Identities=27% Similarity=0.475 Sum_probs=42.0
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHH----CCCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIA----YGAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e----~GAkVVaISDs 448 (577)
..+|..|++. ++++.+.+++||+|+|.| +..||.-++.+|.+ .++. |+++.+
T Consensus 139 ~PcTp~ail~----ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~at-Vt~~hs 195 (295)
T PRK14174 139 VSCTPYGILE----LLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCT-VTICHS 195 (295)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCE-EEEEeC
Confidence 4789988754 556668899999999999 67899999999987 6787 556665
No 227
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=86.60 E-value=0.72 Score=49.87 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=28.7
Q ss_pred CceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
-++|+|.||||.|+..|+.|.+.|..+++.+-+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRs 84 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRS 84 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcc
Confidence 468999999999999999999999997765544
No 228
>PRK08605 D-lactate dehydrogenase; Validated
Probab=86.56 E-value=0.87 Score=48.44 Aligned_cols=35 Identities=29% Similarity=0.545 Sum_probs=29.8
Q ss_pred CCCCCCceEEEEecchHHHHHHHHH-HHCCCeEEEE
Q 008128 411 NKELKGLRCVVSGSGKIAMHVLEKL-IAYGAIPVSV 445 (577)
Q Consensus 411 g~~l~GkrVaIQGfGNVG~~aA~~L-~e~GAkVVaI 445 (577)
+.+|.|++|.|.|+|++|+.+|+.| ...|.+|++.
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~ 176 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAY 176 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4578999999999999999999999 4578887653
No 229
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=86.36 E-value=1.6 Score=47.95 Aligned_cols=102 Identities=15% Similarity=0.196 Sum_probs=63.8
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~ 492 (577)
++.|++|.|.|.|.+|..+++.|...|+.-|.|++.+ .+++. ++....+ +..++.+
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~----------~~ra~---~la~~~g-----------~~~~~~~ 234 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT----------LERAE---ELAEEFG-----------GEAIPLD 234 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC----------HHHHH---HHHHHcC-----------CcEeeHH
Confidence 6899999999999999999999999998657777762 22321 1111111 0111101
Q ss_pred Ccc--ccccceeecCCc--ccccchhhHhhhhc---cCceEEEecCCCC-CCHH
Q 008128 493 KPW--NERCDVAFPCAS--QNEIDQSDAINLVN---SGCRILVEGSNMP-CTPE 538 (577)
Q Consensus 493 eil--~~~cDIlIPcA~--~n~It~enA~~l~~---~~akiVvEgAN~p-~T~e 538 (577)
++. -.++||+|-|+. ...++.+..+...+ .+-.+|+.-|+-. +.|+
T Consensus 235 ~~~~~l~~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~~ 288 (423)
T PRK00045 235 ELPEALAEADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDIEPE 288 (423)
T ss_pred HHHHHhccCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCccc
Confidence 111 136899999865 46777777665432 1346888888644 4443
No 230
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.16 E-value=2.4 Score=46.16 Aligned_cols=33 Identities=27% Similarity=0.179 Sum_probs=28.8
Q ss_pred CCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+.++|.|.|+|..|..+|+.|.+.|++ |..+|.
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~-V~g~D~ 34 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVY-VIGVDK 34 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCE-EEEEeC
Confidence 347899999999999999999999998 556775
No 231
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=86.15 E-value=2.4 Score=46.47 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=27.1
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++|+|.|.|.||..+|..|.+.|..|++ .|.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~-~D~ 34 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIG-VDI 34 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEE-EeC
Confidence 6899999999999999999999999654 454
No 232
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.14 E-value=3.1 Score=47.16 Aligned_cols=111 Identities=12% Similarity=0.182 Sum_probs=61.8
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCccc
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWN 496 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil~ 496 (577)
-+++|.|+|++|+.+++.|.+.|..++ +.|. |.+++ .+.++ .+ ..-+ +.++ ++.+.|.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vv-vId~----------d~~~~---~~~~~-~g-~~~i---~GD~---~~~~~L~ 475 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLV-VIET----------SRTRV---DELRE-RG-IRAV---LGNA---ANEEIMQ 475 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEE-EEEC----------CHHHH---HHHHH-CC-CeEE---EcCC---CCHHHHH
Confidence 378999999999999999999998865 4444 23333 22222 11 1100 0111 1122331
Q ss_pred ----cccceeecCCcccccch---hhHhhhhccCceEEEecCCCCCCHHHHHHHHhCCc--EEecch
Q 008128 497 ----ERCDVAFPCASQNEIDQ---SDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANV--LIAPAM 554 (577)
Q Consensus 497 ----~~cDIlIPcA~~n~It~---enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI--~viPD~ 554 (577)
.+||.++=+...+.-+. ..+.+. ...+++|+-.. +++..+.|++.|+ .+.|..
T Consensus 476 ~a~i~~a~~viv~~~~~~~~~~iv~~~~~~-~~~~~iiar~~----~~~~~~~l~~~Gad~vv~p~~ 537 (558)
T PRK10669 476 LAHLDCARWLLLTIPNGYEAGEIVASAREK-RPDIEIIARAH----YDDEVAYITERGANQVVMGER 537 (558)
T ss_pred hcCccccCEEEEEcCChHHHHHHHHHHHHH-CCCCeEEEEEC----CHHHHHHHHHcCCCEEEChHH
Confidence 37887665544432221 222332 23578888653 4677788998886 344443
No 233
>PLN02688 pyrroline-5-carboxylate reductase
Probab=85.99 E-value=4.2 Score=41.15 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.1
Q ss_pred ceEEEEecchHHHHHHHHHHHCCC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGA 440 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GA 440 (577)
++|.+.|+|++|...++.|.+.|.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~ 24 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGV 24 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC
Confidence 478999999999999999999886
No 234
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.85 E-value=1.3 Score=48.26 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=31.3
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+++|++|.|.|.|..|..+|+.|.+.|++ |.++|.
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~-V~~~d~ 36 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGAN-VTVNDG 36 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEcC
Confidence 46899999999999999999999999999 556785
No 235
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=85.84 E-value=2.1 Score=45.06 Aligned_cols=95 Identities=16% Similarity=0.186 Sum_probs=61.1
Q ss_pred ceEEEEecchHHHHHHHHHH-HCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCC-CCc
Q 008128 417 LRCVVSGSGKIAMHVLEKLI-AYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AKP 494 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~-e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~-~ei 494 (577)
.+|+|.|.|++|...+..+. ..+..+++|+|. ||+-- .+ +..+..| +. .+.++ +.+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~-----d~es~---~l----a~A~~~G-i~---------~~~~~~e~l 59 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGI-----DPESD---GL----ARARELG-VK---------TSAEGVDGL 59 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeC-----CcccH---HH----HHHHHCC-CC---------EEECCHHHH
Confidence 47999999999997765555 467899999997 44310 11 1111111 11 11111 223
Q ss_pred c-ccccceeecCCcccccchhhHhhhhccCceEEEec--CCCC
Q 008128 495 W-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEG--SNMP 534 (577)
Q Consensus 495 l-~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEg--AN~p 534 (577)
+ +.+.|+++-|+ .+..+.+.+....+.|+.+|+|- +++|
T Consensus 60 l~~~dIDaV~iaT-p~~~H~e~a~~al~aGk~VIdekPa~~~p 101 (285)
T TIGR03215 60 LANPDIDIVFDAT-SAKAHARHARLLAELGKIVIDLTPAAIGP 101 (285)
T ss_pred hcCCCCCEEEECC-CcHHHHHHHHHHHHcCCEEEECCccccCC
Confidence 3 24689988877 45578888888888899998885 5545
No 236
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=85.72 E-value=7.2 Score=35.33 Aligned_cols=104 Identities=20% Similarity=0.313 Sum_probs=55.8
Q ss_pred ceEEEEe----cchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCC
Q 008128 417 LRCVVSG----SGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (577)
Q Consensus 417 krVaIQG----fGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~ 492 (577)
|+|+|.| -++.|..+.+.|.+.|.+|..|.-..+.|. | +. .|++..
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~---G------------------~~----~y~sl~----- 50 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL---G------------------IK----CYPSLA----- 50 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET---T------------------EE-----BSSGG-----
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC---c------------------EE----eecccc-----
Confidence 6899999 589999999999999999887743322210 1 11 122211
Q ss_pred CccccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHHHHHhCCcEEe-cc
Q 008128 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIA-PA 553 (577)
Q Consensus 493 eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI~vi-PD 553 (577)
++ -.++|+++-|.....+ .+..+.+.+.+++.|.=-+- -.++++.+..++.|+.++ |.
T Consensus 51 e~-p~~iDlavv~~~~~~~-~~~v~~~~~~g~~~v~~~~g-~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 51 EI-PEPIDLAVVCVPPDKV-PEIVDEAAALGVKAVWLQPG-AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp GC-SST-SEEEE-S-HHHH-HHHHHHHHHHT-SEEEE-TT-S--HHHHHHHHHTT-EEEESS
T ss_pred CC-CCCCCEEEEEcCHHHH-HHHHHHHHHcCCCEEEEEcc-hHHHHHHHHHHHcCCEEEeCC
Confidence 11 2467777766553332 22233333335444332111 567888999999999988 64
No 237
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=85.62 E-value=5.4 Score=43.18 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=39.8
Q ss_pred ceEEEEecchHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcc
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL 476 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~-GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l 476 (577)
.||.|=|||-+|+.+.+.+.+. +..||+|-|. ..|.+.+..|+++-..+|++
T Consensus 3 ~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~--------~~~~~~~ayll~yDS~hG~~ 55 (342)
T PTZ00353 3 ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDA--------SVSIAYIAYVLEQESPLSAP 55 (342)
T ss_pred eEEEEECCChHHHHHHHHHHhcCCcEEEEecCC--------CCCHHHHHHHhhhhccCCCC
Confidence 5899999999999999997754 5899999874 23566666777776556655
No 238
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=85.62 E-value=1.3 Score=47.67 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=29.2
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEE
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVS 444 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVa 444 (577)
.|+|++|.|.|+|++|...|+.|.+.|.+|+.
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv 45 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGVDVVV 45 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEE
Confidence 47899999999999999999999999998654
No 239
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.51 E-value=13 Score=39.62 Aligned_cols=102 Identities=19% Similarity=0.166 Sum_probs=58.6
Q ss_pred CceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCcc
Q 008128 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW 495 (577)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil 495 (577)
+.+|+|.|.|.+|.-++..+.-.|+..|.++|. ++ ++| ...++..+. .-.. .+..+ .....++
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~-----~~-----~Rl---~~A~~~~g~-~~~~--~~~~~-~~~~~~~ 231 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDR-----SP-----ERL---ELAKEAGGA-DVVV--NPSED-DAGAEIL 231 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCC-----CH-----HHH---HHHHHhCCC-eEee--cCccc-cHHHHHH
Confidence 339999999999999999888999888888886 33 343 111211111 0000 00000 0001111
Q ss_pred ----ccccceeecCCcccccchhhHhhhhccCceEEEecCCCCC
Q 008128 496 ----NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPC 535 (577)
Q Consensus 496 ----~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~ 535 (577)
...+|++|.|+. ....-+.+-++++.+-+++.=|--.+-
T Consensus 232 ~~t~g~g~D~vie~~G-~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 232 ELTGGRGADVVIEAVG-SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred HHhCCCCCCEEEECCC-CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 135999999997 443445666666666666666655443
No 240
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.30 E-value=1.3 Score=48.19 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=31.3
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++++++|+|.|.|.+|..+|+.|.+.|++| .++|.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V-~~~d~ 36 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKV-ILTDE 36 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEE-EEEeC
Confidence 578999999999999999999999999995 56666
No 241
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=85.23 E-value=4.1 Score=45.69 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=26.9
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++|+|.|.|++|...|..|...|..| .+.|.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V-~v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDV-AVFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeE-EEEeC
Confidence 48999999999999999999999984 56665
No 242
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=85.14 E-value=5.2 Score=44.75 Aligned_cols=35 Identities=34% Similarity=0.526 Sum_probs=31.4
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++.+++|+|.|.|.-|..+++.|.+.|++ |.++|.
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~G~~-v~v~D~ 38 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKLGAE-VTVSDD 38 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHCCCe-EEEEcC
Confidence 45589999999999999999999999999 678886
No 243
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=85.14 E-value=1.3 Score=43.20 Aligned_cols=35 Identities=26% Similarity=0.144 Sum_probs=27.7
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
|++|+|+|.|+|+-|..-|..|.+.|..| .|....
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V-~Vglr~ 36 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNV-IVGLRE 36 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EE-EEEE-T
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCE-EEEecC
Confidence 57999999999999999999999999985 455543
No 244
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=85.13 E-value=9.1 Score=40.13 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=77.8
Q ss_pred ceEEEEec-chHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCC-C
Q 008128 417 LRCVVSGS-GKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA-K 493 (577)
Q Consensus 417 krVaIQGf-GNVG~~aA~~L~e~-GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~-e 493 (577)
.+|+|.|+ |.+|+.+++.+.+. +..+++..|+.+... .|-|..++ . ..+.+ + ..+.++ .
T Consensus 3 iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~--~g~d~ge~---~----g~~~~--------g-v~v~~~~~ 64 (266)
T COG0289 3 IKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLS--LGSDAGEL---A----GLGLL--------G-VPVTDDLL 64 (266)
T ss_pred ceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccc--cccchhhh---c----ccccc--------C-ceeecchh
Confidence 58999997 99999999999875 589999999866432 23343332 0 00111 1 122222 2
Q ss_pred ccccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHHHH----HhCCcEEecchhc
Q 008128 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL----KKANVLIAPAMAA 556 (577)
Q Consensus 494 il~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL----~~rGI~viPD~~a 556 (577)
.-..++||+|--+.. +.+.++++..++++.++|++= - .+|++-.+.| ++-+|++.|.+..
T Consensus 65 ~~~~~~DV~IDFT~P-~~~~~~l~~~~~~~~~lVIGT-T-Gf~~e~~~~l~~~a~~v~vv~a~NfSi 128 (266)
T COG0289 65 LVKADADVLIDFTTP-EATLENLEFALEHGKPLVIGT-T-GFTEEQLEKLREAAEKVPVVIAPNFSL 128 (266)
T ss_pred hcccCCCEEEECCCc-hhhHHHHHHHHHcCCCeEEEC-C-CCCHHHHHHHHHHHhhCCEEEeccchH
Confidence 336789999998766 567788888888888888743 2 3455554444 4457888887753
No 245
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.10 E-value=4.3 Score=41.83 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=26.8
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++|+|.|.|.+|..+|..|.+.|..|+ +.|.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~-~~d~ 32 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTT-LVDI 32 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEE-EEeC
Confidence 479999999999999999999999854 5565
No 246
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=85.09 E-value=1.9 Score=46.91 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=31.8
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
|+..+|.|.|.|-+|..+|+.|...|..=+++.|.+
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 567899999999999999999999998777888753
No 247
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=85.02 E-value=15 Score=38.98 Aligned_cols=108 Identities=20% Similarity=0.169 Sum_probs=62.5
Q ss_pred CCceEEEEecchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCC-C
Q 008128 415 KGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-A 492 (577)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e-~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~-~ 492 (577)
.-+++.|.|.|+.|++-++.|.. ...+-|.|.|. +.++...+.+...+.+ ......++ +
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r----------~~~~~~~~~~~~~~~g---------~~v~~~~~~~ 187 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR----------TPSTREKFALRASDYE---------VPVRAATDPR 187 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC----------CHHHHHHHHHHHHhhC---------CcEEEeCCHH
Confidence 35799999999999987777754 23444666665 2333322222111111 01122221 2
Q ss_pred CccccccceeecCCcc--cccchhhHhhhhccCceEEEecCCCCCCHHHHHH-HHhC
Q 008128 493 KPWNERCDVAFPCASQ--NEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDV-LKKA 546 (577)
Q Consensus 493 eil~~~cDIlIPcA~~--n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~i-L~~r 546 (577)
+.. .+|||++-|+.. -.++.+. ++.++.+++=|++.|-..|.+.. |...
T Consensus 188 eav-~~aDiVitaT~s~~P~~~~~~----l~~g~~v~~vGs~~p~~~Eld~~~l~~a 239 (325)
T TIGR02371 188 EAV-EGCDILVTTTPSRKPVVKADW----VSEGTHINAIGADAPGKQELDPEILKNA 239 (325)
T ss_pred HHh-ccCCEEEEecCCCCcEecHHH----cCCCCEEEecCCCCcccccCCHHHHhcC
Confidence 222 489999987753 3344332 35699999999999976666543 4433
No 248
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=84.85 E-value=3.4 Score=47.56 Aligned_cols=113 Identities=13% Similarity=0.099 Sum_probs=67.5
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCcc-
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW- 495 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil- 495 (577)
.+|+|.|+|.+|+.+++.|.+.|..++ +.|. |.+.+ .+.++ .|. .-| |.++ +..++|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vv-vID~----------d~~~v---~~~~~-~g~-~v~---~GDa---t~~~~L~ 458 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRIT-VLER----------DISAV---NLMRK-YGY-KVY---YGDA---TQLELLR 458 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEE-EEEC----------CHHHH---HHHHh-CCC-eEE---EeeC---CCHHHHH
Confidence 479999999999999999999998854 5555 33333 22222 121 111 1111 112233
Q ss_pred ---ccccceeecCCcccccchhhHhhhh--ccCceEEEecCCCCCCHHHHHHHHhCCcEE-ecchh
Q 008128 496 ---NERCDVAFPCASQNEIDQSDAINLV--NSGCRILVEGSNMPCTPEAVDVLKKANVLI-APAMA 555 (577)
Q Consensus 496 ---~~~cDIlIPcA~~n~It~enA~~l~--~~~akiVvEgAN~p~T~eA~~iL~~rGI~v-iPD~~ 555 (577)
-.+||+++=|....+.|...+..+. ...+++|+-..| ++..+.|++.|+.. +|...
T Consensus 459 ~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~----~~~~~~L~~~Ga~~vv~e~~ 520 (601)
T PRK03659 459 AAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARARG----RVEAHELLQAGVTQFSRETF 520 (601)
T ss_pred hcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCC----HHHHHHHHhCCCCEEEccHH
Confidence 2378988877665444433332221 246788886643 57778899999854 46543
No 249
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=84.72 E-value=1.5 Score=42.91 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=30.3
Q ss_pred CCCCceEEEEec-chHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaIS 446 (577)
+++||+++|.|. |.+|.++|+.|.+.|++|+.++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 578999999995 8999999999999999977664
No 250
>PRK07877 hypothetical protein; Provisional
Probab=84.71 E-value=0.84 Score=53.69 Aligned_cols=129 Identities=12% Similarity=0.132 Sum_probs=70.2
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCC-eEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE 491 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GA-kVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~ 491 (577)
-|+.++|.|.|.| ||+++|..|...|. -=+.+.|. |=++..-|.++. + +..+. +.+.++.. .
T Consensus 104 ~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~-------D~ve~sNLnRq~-~-----~~~di--G~~Kv~~a-~ 166 (722)
T PRK07877 104 RLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADF-------DTLELSNLNRVP-A-----GVFDL--GVNKAVVA-A 166 (722)
T ss_pred HHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcC-------CEEccccccccc-C-----Chhhc--ccHHHHHH-H
Confidence 4678999999999 99999999999994 33667665 323332222210 0 00000 00111100 0
Q ss_pred CCccccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHH-HHHHHhCCcEEecchhcccccee
Q 008128 492 AKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEA-VDVLKKANVLIAPAMAAGAGGVR 562 (577)
Q Consensus 492 ~eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA-~~iL~~rGI~viPD~~aNAGGVi 562 (577)
+.+..+.-+|=|- +...-|+.+|+..+++ ++.+|+++..+.-|.-. .+.-.++||-++=.- .++|.+
T Consensus 167 ~~l~~inp~i~v~-~~~~~i~~~n~~~~l~-~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~--~~~g~~ 234 (722)
T PRK07877 167 RRIAELDPYLPVE-VFTDGLTEDNVDAFLD-GLDVVVEECDSLDVKVLLREAARARRIPVLMAT--SDRGLL 234 (722)
T ss_pred HHHHHHCCCCEEE-EEeccCCHHHHHHHhc-CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEc--CCCCCc
Confidence 1122233333332 2344567788888765 68888888876533222 234467788777433 344544
No 251
>PRK08628 short chain dehydrogenase; Provisional
Probab=84.69 E-value=1.5 Score=43.33 Aligned_cols=36 Identities=31% Similarity=0.430 Sum_probs=31.3
Q ss_pred CCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 411 g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
+.+++|++++|.| .|-+|.++|+.|.+.|++|+.++
T Consensus 2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~ 38 (258)
T PRK08628 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFG 38 (258)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEc
Confidence 4679999999998 68999999999999999976553
No 252
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=84.69 E-value=2.7 Score=45.52 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=29.9
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+.+++|+|.|+|.+|..+++.|..+|++ |.+.|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~-V~v~d~ 198 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGAT-VTILDI 198 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCe-EEEEEC
Confidence 5678899999999999999999999998 556665
No 253
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=84.56 E-value=1.6 Score=42.49 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=30.5
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
++++++|+|.| .|.+|.++++.|.+.|++|+.++-
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r 38 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDI 38 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 46789999999 799999999999999999776644
No 254
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=84.56 E-value=3.1 Score=43.38 Aligned_cols=113 Identities=15% Similarity=0.043 Sum_probs=62.9
Q ss_pred eEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCC-CCccc
Q 008128 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-AKPWN 496 (577)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~-~eil~ 496 (577)
+|.|.|.|++|...++.|.+.|..| .+.|. +++ .++ +. + . ++...+. .+ ..
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v-~v~~~-----~~~---~~~---~~---~-~-----------g~~~~~s~~~-~~ 53 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQL-HVTTI-----GPV---ADE---LL---S-L-----------GAVSVETARQ-VT 53 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeE-EEEeC-----CHh---HHH---HH---H-c-----------CCeecCCHHH-HH
Confidence 6899999999999999999999875 46665 221 111 11 1 1 1111111 11 22
Q ss_pred cccceeecCCcccccchhh-------HhhhhccCceEEEecCC-CC-CCHHHHHHHHhCCcEEecchhcccccee
Q 008128 497 ERCDVAFPCASQNEIDQSD-------AINLVNSGCRILVEGSN-MP-CTPEAVDVLKKANVLIAPAMAAGAGGVR 562 (577)
Q Consensus 497 ~~cDIlIPcA~~n~It~en-------A~~l~~~~akiVvEgAN-~p-~T~eA~~iL~~rGI~viPD~~aNAGGVi 562 (577)
..||++|-|-.......+. +..+ . .-++|++-.. .| ++.+..+.+.++|+.|+-.- -+||..
T Consensus 54 ~~advVi~~v~~~~~v~~v~~~~~g~~~~~-~-~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaP--VsGg~~ 124 (292)
T PRK15059 54 EASDIIFIMVPDTPQVEEVLFGENGCTKAS-L-KGKTIVDMSSISPIETKRFARQVNELGGDYLDAP--VSGGEI 124 (292)
T ss_pred hcCCEEEEeCCChHHHHHHHcCCcchhccC-C-CCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEec--CCCCHH
Confidence 4789988775533111111 1111 1 2256665543 44 34556688899999877543 345543
No 255
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.40 E-value=1.7 Score=48.01 Aligned_cols=39 Identities=33% Similarity=0.537 Sum_probs=33.4
Q ss_pred HcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 409 DMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 409 ~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+.+.++++++|+|.|.|..|..+|+.|.+.|.+ |.++|.
T Consensus 9 ~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~ 47 (480)
T PRK01438 9 SWHSDWQGLRVVVAGLGVSGFAAADALLELGAR-VTVVDD 47 (480)
T ss_pred hcccCcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 345567899999999999999999999999999 566664
No 256
>PRK12828 short chain dehydrogenase; Provisional
Probab=84.07 E-value=1.7 Score=41.81 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=29.4
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
.++|++++|.| .|-+|+.+++.|.+.|++|+.++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~ 38 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIG 38 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEe
Confidence 47899999998 59999999999999999965543
No 257
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.01 E-value=4.6 Score=40.91 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=24.5
Q ss_pred eEEEEecchHHHHHHHHHHHCCCeE--EEEEcC
Q 008128 418 RCVVSGSGKIAMHVLEKLIAYGAIP--VSVSDA 448 (577)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkV--VaISDs 448 (577)
+|.|.|+|++|+.+++.|.+.|..+ +.++|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r 34 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR 34 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECC
Confidence 7999999999999999999887432 344443
No 258
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=84.00 E-value=1.8 Score=42.79 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=30.3
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+++||+++|.| .|.+|..+|+.|.+.|++|+. .+.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~-~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVIL-NGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEE-EeC
Confidence 57899999999 599999999999999999664 454
No 259
>PLN02712 arogenate dehydrogenase
Probab=83.89 E-value=1.6 Score=50.87 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=32.0
Q ss_pred cCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEE
Q 008128 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 410 ~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaI 445 (577)
.+.++++++|.|.|+|++|+.+|+.|.+.|.+|+++
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~ 398 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAY 398 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEE
Confidence 467889999999999999999999999999887644
No 260
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=83.78 E-value=2.7 Score=45.05 Aligned_cols=80 Identities=16% Similarity=0.242 Sum_probs=53.8
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~ 492 (577)
=+.||-++|-|+|+||...|..|.-.|++| -|.+. || | -+| ... ..+| +...-+
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~V-ivTEi-----DP--I--~AL---QAa------MeG~-------~V~tm~ 264 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARV-IVTEI-----DP--I--CAL---QAA------MEGY-------EVTTLE 264 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEE-EEecc-----Cc--h--HHH---HHH------hhcc-------EeeeHH
Confidence 478999999999999999999999999984 46664 33 2 222 111 1122 111111
Q ss_pred CccccccceeecCCc-ccccchhhHhhh
Q 008128 493 KPWNERCDVAFPCAS-QNEIDQSDAINL 519 (577)
Q Consensus 493 eil~~~cDIlIPcA~-~n~It~enA~~l 519 (577)
+ --.++|||+-++. .++|+.+--.++
T Consensus 265 e-a~~e~difVTtTGc~dii~~~H~~~m 291 (434)
T KOG1370|consen 265 E-AIREVDIFVTTTGCKDIITGEHFDQM 291 (434)
T ss_pred H-hhhcCCEEEEccCCcchhhHHHHHhC
Confidence 1 1246799999876 688998888877
No 261
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=83.77 E-value=1.6 Score=44.40 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=32.2
Q ss_pred CCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
.+++|++|+|+|.|.||..=++.|.+.||+|+-||-.
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4677999999999999999999999999998766643
No 262
>PRK06138 short chain dehydrogenase; Provisional
Probab=83.73 E-value=1.8 Score=42.30 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=29.9
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
+++|++++|.| .|-+|.++++.|.+.|++|+.++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVAD 36 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEec
Confidence 57899999998 59999999999999999977654
No 263
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=83.65 E-value=2.2 Score=41.16 Aligned_cols=36 Identities=33% Similarity=0.359 Sum_probs=31.1
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++++++++|.| .|.+|+++++.|.+.|++|+.++..
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 56789999998 5999999999999999998666654
No 264
>PRK08328 hypothetical protein; Provisional
Probab=83.61 E-value=1.5 Score=44.37 Aligned_cols=36 Identities=28% Similarity=0.289 Sum_probs=31.8
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
.|++++|+|.|.|-+|..+++.|...|..-+.+.|.
T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~ 59 (231)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE 59 (231)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 357889999999999999999999999877777775
No 265
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=83.60 E-value=1.5 Score=46.90 Aligned_cols=109 Identities=20% Similarity=0.287 Sum_probs=66.1
Q ss_pred cCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEe
Q 008128 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY 489 (577)
Q Consensus 410 ~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i 489 (577)
++.++.|||+-|.|+|.+|+.+|+.+.-.|.+|+. ||+..- .+.. + . -+++++
T Consensus 140 ~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y--------~~~~~~-~~~~------~--~----------~~~~y~ 192 (324)
T COG1052 140 LGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLY--------YDRSPN-PEAE------K--E----------LGARYV 192 (324)
T ss_pred cccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEE--------ECCCCC-hHHH------h--h----------cCceec
Confidence 46789999999999999999999999988999653 343332 1110 0 0 023444
Q ss_pred CCCCccccccceeecCCc-----ccccchhhHhhhhccCceEEEecCCCCC-CHHH-HHHHHhCCc
Q 008128 490 DEAKPWNERCDVAFPCAS-----QNEIDQSDAINLVNSGCRILVEGSNMPC-TPEA-VDVLKKANV 548 (577)
Q Consensus 490 ~~~eil~~~cDIlIPcA~-----~n~It~enA~~l~~~~akiVvEgAN~p~-T~eA-~~iL~~rGI 548 (577)
+.+++ -..+||++-... .+.||.+.-.++ +.++ +++--|=+++ ..+| .+.|++.-|
T Consensus 193 ~l~el-l~~sDii~l~~Plt~~T~hLin~~~l~~m-k~ga-~lVNtaRG~~VDe~ALi~AL~~g~i 255 (324)
T COG1052 193 DLDEL-LAESDIISLHCPLTPETRHLINAEELAKM-KPGA-ILVNTARGGLVDEQALIDALKSGKI 255 (324)
T ss_pred cHHHH-HHhCCEEEEeCCCChHHhhhcCHHHHHhC-CCCe-EEEECCCccccCHHHHHHHHHhCCc
Confidence 42222 246777765433 456666665555 2234 5565566664 3333 477766654
No 266
>PRK06823 ornithine cyclodeaminase; Validated
Probab=83.60 E-value=10 Score=40.38 Aligned_cols=146 Identities=14% Similarity=0.106 Sum_probs=81.0
Q ss_pred ccCcccc-c-cCCCCCCCcchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHC-CCeEEEEEcCCCeeeC
Q 008128 378 FTGPRIF-W-SGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVD 454 (577)
Q Consensus 378 vTGKp~~-~-GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~-GAkVVaISDs~G~Iyd 454 (577)
-||.|.. + .|.....--||-.-..+++.+.+ -.-+++.|.|.|..|.+-++.+... ..+-|.| ||
T Consensus 93 ~TG~p~Ail~d~~~lT~~RTaA~sala~~~La~-----~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v-------~~ 160 (315)
T PRK06823 93 KTGEPQALLLDEGWLTALRTALAGRIVARLLAP-----QHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWV-------WG 160 (315)
T ss_pred CCCceEEEEcCCChHHHHHHHHHHHHHHHHhcC-----CCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEE-------EC
Confidence 4788886 3 45443333344333444454432 1457999999999999999888763 2333444 44
Q ss_pred CCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCccccccceeecCCc--ccccchhhHhhhhccCceEEEecCC
Q 008128 455 EDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCAS--QNEIDQSDAINLVNSGCRILVEGSN 532 (577)
Q Consensus 455 p~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil~~~cDIlIPcA~--~n~It~enA~~l~~~~akiVvEgAN 532 (577)
.+ .++...+.+..++.+ + .....+..+-.-.+|||++-|+. +-.++.+. ++.++.+++=|++
T Consensus 161 r~---~~~a~~~~~~~~~~~-~--------~v~~~~~~~~av~~ADIV~taT~s~~P~~~~~~----l~~G~hi~~iGs~ 224 (315)
T PRK06823 161 RS---ETALEEYRQYAQALG-F--------AVNTTLDAAEVAHAANLIVTTTPSREPLLQAED----IQPGTHITAVGAD 224 (315)
T ss_pred CC---HHHHHHHHHHHHhcC-C--------cEEEECCHHHHhcCCCEEEEecCCCCceeCHHH----cCCCcEEEecCCC
Confidence 33 334322232211111 1 12222221112258999997755 34454443 3459999999999
Q ss_pred CCCCHHHHH-HHHhCCcEEe
Q 008128 533 MPCTPEAVD-VLKKANVLIA 551 (577)
Q Consensus 533 ~p~T~eA~~-iL~~rGI~vi 551 (577)
.|-..|.+. +|.....+|+
T Consensus 225 ~p~~~Eld~~~l~~a~~vvv 244 (315)
T PRK06823 225 SPGKQELDAELVARADKILV 244 (315)
T ss_pred CcccccCCHHHHhhCCEEEE
Confidence 997777764 4444444444
No 267
>PRK07060 short chain dehydrogenase; Provisional
Probab=83.55 E-value=2.1 Score=41.72 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=30.4
Q ss_pred CCCCCceEEEEec-chHHHHHHHHHHHCCCeEEEEE
Q 008128 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 412 ~~l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaIS 446 (577)
.++++++++|.|. |.+|.++++.|.+.|++|+.++
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~ 40 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAA 40 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEe
Confidence 4678999999996 8999999999999999976543
No 268
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=83.41 E-value=3.5 Score=39.89 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=28.3
Q ss_pred eEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
+|.|.|.|-+|+.+++.|...|..=+.+.|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999998667788864
No 269
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=83.41 E-value=1.4 Score=44.30 Aligned_cols=116 Identities=17% Similarity=0.306 Sum_probs=66.0
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHh-hcCcccccccccCCceEeCCCCcc
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKS-QQRSLRDYSKTYARSKYYDEAKPW 495 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~-~~g~l~~y~~~~p~a~~i~~~eil 495 (577)
++|+|.|.|.||+.+|+.|.+.|..|+.|-+ |.+.+ .+... .... ..+ . ..+ +..+.|
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~-----------d~~~~---~~~~~~~~~~-~~v-~--gd~---t~~~~L 59 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDR-----------DEERV---EEFLADELDT-HVV-I--GDA---TDEDVL 59 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEc-----------CHHHH---HHHhhhhcce-EEE-E--ecC---CCHHHH
Confidence 5899999999999999999999999776533 22222 21111 0100 000 0 000 112233
Q ss_pred ----ccccceeecCCcccccchhhHhhhhc-cCceEEEecCCCCCCHHHHHHHHhCC--cEEecchhc
Q 008128 496 ----NERCDVAFPCASQNEIDQSDAINLVN-SGCRILVEGSNMPCTPEAVDVLKKAN--VLIAPAMAA 556 (577)
Q Consensus 496 ----~~~cDIlIPcA~~n~It~enA~~l~~-~~akiVvEgAN~p~T~eA~~iL~~rG--I~viPD~~a 556 (577)
-.++|+++=+...++.|.--+..-.+ .+.+-|+==++ +++-.++|++-| .++.|...+
T Consensus 60 ~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~---~~~~~~~~~~~g~~~ii~Pe~~~ 124 (225)
T COG0569 60 EEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARAR---NPEHEKVLEKLGADVIISPEKLA 124 (225)
T ss_pred HhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEec---CHHHHHHHHHcCCcEEECHHHHH
Confidence 24899999988876766433322212 14443333232 356678888888 567777654
No 270
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=83.19 E-value=1.2 Score=46.02 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=30.5
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
|+..+|+|.|.|-||+++++.|.+-|..=+++.|-
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~ 62 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDM 62 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEec
Confidence 56789999999999999999999999765777765
No 271
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=82.97 E-value=4.8 Score=46.57 Aligned_cols=109 Identities=14% Similarity=0.165 Sum_probs=64.6
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCccc
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWN 496 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil~ 496 (577)
.+|+|.|+|.+|+.+++.|.+.|..++. .|. |.+.++ +.++ .| ..-| |.++ +..+++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvv-ID~----------d~~~v~---~~~~-~g-~~v~---~GDa---t~~~~L~ 458 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTV-LDH----------DPDHIE---TLRK-FG-MKVF---YGDA---TRMDLLE 458 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEE-EEC----------CHHHHH---HHHh-cC-CeEE---EEeC---CCHHHHH
Confidence 5899999999999999999999988654 465 333332 2222 11 1111 1111 1122331
Q ss_pred ----cccceeecCCcccccchhhHhhhh--ccCceEEEecCCCCCCHHHHHHHHhCCcEEe
Q 008128 497 ----ERCDVAFPCASQNEIDQSDAINLV--NSGCRILVEGSNMPCTPEAVDVLKKANVLIA 551 (577)
Q Consensus 497 ----~~cDIlIPcA~~n~It~enA~~l~--~~~akiVvEgAN~p~T~eA~~iL~~rGI~vi 551 (577)
.++|.++-|.-.++.|...+.... ....++|+-.. +++..+.|++.|+-.+
T Consensus 459 ~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~----d~~~~~~L~~~Gad~v 515 (621)
T PRK03562 459 SAGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQIIARAR----DVDHYIRLRQAGVEKP 515 (621)
T ss_pred hcCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEEC----CHHHHHHHHHCCCCEE
Confidence 378888877765455543333221 23568888553 3466778899988644
No 272
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=82.96 E-value=1.7 Score=43.09 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=32.9
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
.|+.++|.|.|.|-+|+.+|+.|...|..-+.+.|.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4678899999999999999999999998667888874
No 273
>PRK06523 short chain dehydrogenase; Provisional
Probab=82.81 E-value=2.1 Score=42.26 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=30.7
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
.+++|++++|.| .|.+|+.+++.|.+.|++|+.++
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~ 40 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTA 40 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEe
Confidence 468899999999 58999999999999999976654
No 274
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.73 E-value=2.3 Score=41.50 Aligned_cols=35 Identities=31% Similarity=0.411 Sum_probs=29.9
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++++++++|.| .|.+|.++++.|.+.|++|+.+ +.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~-~r 37 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVT-DR 37 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEE-eC
Confidence 47889999999 5999999999999999996554 44
No 275
>PRK06841 short chain dehydrogenase; Provisional
Probab=82.65 E-value=2.2 Score=41.93 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=30.5
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
.+++|++|.|.| .|-+|.++|+.|.+.|++|+.++
T Consensus 11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~ 46 (255)
T PRK06841 11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLD 46 (255)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 368899999999 59999999999999999976553
No 276
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.25 E-value=1.8 Score=47.97 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=31.0
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++|++|+|.|+|.-|..+|++|.+.|++ |.++|.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~ 39 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLF 39 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcC
Confidence 5789999999999999999999999999 567886
No 277
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.18 E-value=2.5 Score=41.02 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=29.5
Q ss_pred CCCCceEEEEec-chHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaIS 446 (577)
+++|++|.|.|. |.+|+++++.|.+.|++|+.++
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~ 36 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINS 36 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 468899999995 8899999999999999977653
No 278
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=81.99 E-value=5.8 Score=40.98 Aligned_cols=118 Identities=13% Similarity=0.177 Sum_probs=65.1
Q ss_pred ceEEEEecchHHHHHHHHHHHCC----CeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYG----AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~G----AkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~ 492 (577)
.+|.|.|+|++|..+++.|.+.| .+|+.++.+ + .+++ ...... ++..+...+.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~------~----~~~~---~~l~~~----------~~~~~~~~~~ 58 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSS------K----NEHF---NQLYDK----------YPTVELADNE 58 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCC------c----HHHH---HHHHHH----------cCCeEEeCCH
Confidence 37999999999999999999887 455544332 1 1122 111111 1122211211
Q ss_pred CccccccceeecCCcccccchhhHhhh---hccCceEEEecCCCCCCHHHHHHHHh-CCcEEecchhcccc
Q 008128 493 KPWNERCDVAFPCASQNEIDQSDAINL---VNSGCRILVEGSNMPCTPEAVDVLKK-ANVLIAPAMAAGAG 559 (577)
Q Consensus 493 eil~~~cDIlIPcA~~n~It~enA~~l---~~~~akiVvEgAN~p~T~eA~~iL~~-rGI~viPD~~aNAG 559 (577)
.-+..+||++|-|.....+. +-+..+ ++.++ +|+--+|+-...+-.+.|.. +=|.++|...+-.|
T Consensus 59 ~e~~~~aDvVilavpp~~~~-~vl~~l~~~l~~~~-~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~~g 127 (277)
T PRK06928 59 AEIFTKCDHSFICVPPLAVL-PLLKDCAPVLTPDR-HVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSAVG 127 (277)
T ss_pred HHHHhhCCEEEEecCHHHHH-HHHHHHHhhcCCCC-EEEEECCCCCHHHHHHHcCCCCEEEEeCccHHHHh
Confidence 11234899999887654432 333333 22344 56667777655566666643 23477886655443
No 279
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=81.96 E-value=11 Score=39.67 Aligned_cols=90 Identities=19% Similarity=0.203 Sum_probs=50.8
Q ss_pred CCceEEEEecchHHHHHHHHHHH-CC-CeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCC
Q 008128 415 KGLRCVVSGSGKIAMHVLEKLIA-YG-AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA 492 (577)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e-~G-AkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~ 492 (577)
.|.+|+|.|.|.||..++..+.. .| ++|++ +|. ++ ++++.+++ -+.. + .++ +
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~-~~~-----~~-----~k~~~a~~----~~~~--~--------~~~-~ 216 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVV-FGK-----HQ-----EKLDLFSF----ADET--Y--------LID-D 216 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEE-EeC-----cH-----hHHHHHhh----cCce--e--------ehh-h
Confidence 58999999999999999988876 55 45554 444 22 23322211 1110 0 000 0
Q ss_pred CccccccceeecCCcc--cccchhhHhhhhccCceEEEec
Q 008128 493 KPWNERCDVAFPCASQ--NEIDQSDAINLVNSGCRILVEG 530 (577)
Q Consensus 493 eil~~~cDIlIPcA~~--n~It~enA~~l~~~~akiVvEg 530 (577)
..-...+|+++.|+.. +.-+-+.+-++++.+-++|.=|
T Consensus 217 ~~~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 217 IPEDLAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred hhhccCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 0001248999998864 2223445555666677776544
No 280
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.96 E-value=2.4 Score=43.75 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=27.0
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++|+|.|.|++|..+|..|...|..| .+.|.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V-~l~d~ 35 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDV-LLNDV 35 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeE-EEEeC
Confidence 58999999999999999999999885 45565
No 281
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=81.94 E-value=23 Score=40.58 Aligned_cols=180 Identities=17% Similarity=0.180 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccCCCCCcCChhHHHHHHHHhhhhhCCccccccCccccccCCCCCCCcchHHHHHHH
Q 008128 324 DNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFA 403 (577)
Q Consensus 324 ~~Eler~~r~f~~eL~~~IGp~~DVpapDvGt~~~em~~i~~~y~~~~g~~~g~vTGKp~~~GGs~~r~eATG~GV~~~~ 403 (577)
..|-..|...||.+..+-.||++=|-=.|++.--.-. +.+.|+.-.- ++. +--.-||-=++.++
T Consensus 234 g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAfr--lL~kYr~~~c----~FN----------DDIQGTaaValAgl 297 (582)
T KOG1257|consen 234 GKEYDEFLDEFMEAVVQRYGPNTLIQFEDFANHNAFR--LLEKYRNKYC----MFN----------DDIQGTAAVALAGL 297 (582)
T ss_pred ccHHHHHHHHHHHHHHHHhCcceEEEehhccchhHHH--HHHHhccccc----eec----------ccccchhHHHHHHH
Confidence 3455678899999999888999989899998742211 2344543221 111 11233555555677
Q ss_pred HHHHHHcCCCCCCceEEEEecchHHHHHHHHHH----HCCC------eEEEEEcCCCeeeCCC--CCCHHhHhHHHHHHh
Q 008128 404 QLILADMNKELKGLRCVVSGSGKIAMHVLEKLI----AYGA------IPVSVSDAKGYLVDED--GFDYMKISFLRDIKS 471 (577)
Q Consensus 404 ~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~----e~GA------kVVaISDs~G~Iydp~--GLD~e~L~~l~~~k~ 471 (577)
-.+++-.+..|+.-+|++.|.|..|..+|+.+. +.|. |=+-+.|++|-|.... .++..+..
T Consensus 298 laa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~------- 370 (582)
T KOG1257|consen 298 LAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEEARKKIWLVDSKGLITKGRKASLTEEKKP------- 370 (582)
T ss_pred HHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHHHhccEEEEecCceeeccccCCCChhhcc-------
Confidence 777777889999999999999999999987765 3452 3356667666665332 23322211
Q ss_pred hcCcccccccccCCceEeCCCCc-cccccceeecCCc-ccccchhhHhhhhccCceEEEecCCCCC
Q 008128 472 QQRSLRDYSKTYARSKYYDEAKP-WNERCDVAFPCAS-QNEIDQSDAINLVNSGCRILVEGSNMPC 535 (577)
Q Consensus 472 ~~g~l~~y~~~~p~a~~i~~~ei-l~~~cDIlIPcA~-~n~It~enA~~l~~~~akiVvEgAN~p~ 535 (577)
|++..+..+ +-.++ -.++..|||=|+. .+..|++..+.+.++..|=|+=+=-+|+
T Consensus 371 -------fAk~~~~~~--~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFalSNPT 427 (582)
T KOG1257|consen 371 -------FAKDHEEIK--DLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFALSNPT 427 (582)
T ss_pred -------ccccChHHH--HHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEecCCCc
Confidence 111000000 00111 2467888888866 5888888888887766555554544453
No 282
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=81.88 E-value=5.8 Score=44.57 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=26.4
Q ss_pred ceEEEEecchHHHHHHHHHHHCC--CeEEEEEcC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYG--AIPVSVSDA 448 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~G--AkVVaISDs 448 (577)
++|+|.|.|.||..+|-.|.+.| .+|+++ |.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gv-D~ 34 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVV-DI 34 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEE-EC
Confidence 57999999999999999999885 777766 54
No 283
>PLN02240 UDP-glucose 4-epimerase
Probab=81.84 E-value=2.4 Score=44.03 Aligned_cols=35 Identities=29% Similarity=0.444 Sum_probs=30.9
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
++++++|+|.| .|.||.++++.|.+.|.+|++++.
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 57889999998 599999999999999999887753
No 284
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=81.81 E-value=2.5 Score=42.09 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=31.7
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
.+++||+++|.| .+.+|.++|+.|.+.|++|+.++.+
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 468999999998 5899999999999999997765443
No 285
>PRK08291 ectoine utilization protein EutC; Validated
Probab=81.80 E-value=22 Score=37.78 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=67.1
Q ss_pred CCceEEEEecchHHHHHHHHHHH-CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCC-C
Q 008128 415 KGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-A 492 (577)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e-~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~-~ 492 (577)
..++++|.|.|..|...+..+.. .+.+.|.|.+. +.+++..+.+..+++..+ .....++ +
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R----------~~~~a~~l~~~~~~~~g~--------~v~~~~d~~ 192 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWAR----------DAAKAEAYAADLRAELGI--------PVTVARDVH 192 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC----------CHHHHHHHHHHHhhccCc--------eEEEeCCHH
Confidence 45799999999999998888875 56677888776 333443333221111011 0111111 1
Q ss_pred CccccccceeecCCcc--cccchhhHhhhhccCceEEEecCCCCCCHHHHH-HHHhCCcEEecch
Q 008128 493 KPWNERCDVAFPCASQ--NEIDQSDAINLVNSGCRILVEGSNMPCTPEAVD-VLKKANVLIAPAM 554 (577)
Q Consensus 493 eil~~~cDIlIPcA~~--n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~-iL~~rGI~viPD~ 554 (577)
+.+ .++||++-|+.. -.+..+. ++.++.+.+=|++.|...|.+. +|....+++ -|.
T Consensus 193 ~al-~~aDiVi~aT~s~~p~i~~~~----l~~g~~v~~vg~d~~~~rEld~~~l~~a~~v~-vD~ 251 (330)
T PRK08291 193 EAV-AGADIIVTTTPSEEPILKAEW----LHPGLHVTAMGSDAEHKNEIAPAVFAAADLYV-CDR 251 (330)
T ss_pred HHH-ccCCEEEEeeCCCCcEecHHH----cCCCceEEeeCCCCCCcccCCHHHHhhCCEEE-eCC
Confidence 122 368999887653 3344432 2447788888899887777754 344444344 443
No 286
>PRK04148 hypothetical protein; Provisional
Probab=81.63 E-value=2.9 Score=39.42 Aligned_cols=90 Identities=14% Similarity=0.198 Sum_probs=53.0
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK 493 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~e 493 (577)
.++++|++.|.| -|..+|+.|.+.|..|++ .|. ||+ ++ ...++. + + .+. -...+++.-
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~~Via-IDi-----~~~-----aV---~~a~~~-~-~-~~v----~dDlf~p~~ 72 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIV-IDI-----NEK-----AV---EKAKKL-G-L-NAF----VDDLFNPNL 72 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCCEEEE-EEC-----CHH-----HH---HHHHHh-C-C-eEE----ECcCCCCCH
Confidence 467899999999 888899999999999665 465 333 22 222221 1 1 000 111123333
Q ss_pred ccccccceeecCCcccccch---hhHhhhhccCceEEE
Q 008128 494 PWNERCDVAFPCASQNEIDQ---SDAINLVNSGCRILV 528 (577)
Q Consensus 494 il~~~cDIlIPcA~~n~It~---enA~~l~~~~akiVv 528 (577)
-|...+|+..-+-+.-++.. +-|+++ +|.+++
T Consensus 73 ~~y~~a~liysirpp~el~~~~~~la~~~---~~~~~i 107 (134)
T PRK04148 73 EIYKNAKLIYSIRPPRDLQPFILELAKKI---NVPLII 107 (134)
T ss_pred HHHhcCCEEEEeCCCHHHHHHHHHHHHHc---CCCEEE
Confidence 35567777777766666553 344444 666665
No 287
>PRK06172 short chain dehydrogenase; Provisional
Probab=81.62 E-value=2.7 Score=41.41 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=30.6
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
.++++++++|.| .|.+|.++++.|.+.|++|+.+ +.
T Consensus 3 ~~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~-~r 39 (253)
T PRK06172 3 MTFSGKVALVTGGAAGIGRATALAFAREGAKVVVA-DR 39 (253)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eC
Confidence 357899999998 5899999999999999996655 44
No 288
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=81.58 E-value=3.2 Score=46.84 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=27.3
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++|.|.|.|.+|...|..|...|..| .+-|.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V-~l~d~ 36 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQV-LLYDI 36 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeE-EEEeC
Confidence 57999999999999999999999985 46665
No 289
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=81.58 E-value=1.8 Score=42.67 Aligned_cols=36 Identities=17% Similarity=0.482 Sum_probs=32.3
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
|+..+|.|.|.|.+|..+++.|...|.+=+++.|.+
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 567899999999999999999999998878888864
No 290
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=81.54 E-value=2.6 Score=41.17 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=30.1
Q ss_pred CCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 414 l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+++|+++|.| .|.+|+.+|+.|.+.|++|+.+.+.
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~ 36 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGP 36 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCC
Confidence 4688999998 5999999999999999998776543
No 291
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.50 E-value=11 Score=40.88 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=29.7
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++..++++|.|+|.+|+.+++.|.+.|..|+ +.|.
T Consensus 228 ~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~-vid~ 262 (453)
T PRK09496 228 EKPVKRVMIVGGGNIGYYLAKLLEKEGYSVK-LIER 262 (453)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCeEE-EEEC
Confidence 4567899999999999999999999999865 4454
No 292
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.44 E-value=1.8 Score=46.48 Aligned_cols=50 Identities=26% Similarity=0.251 Sum_probs=37.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCC-eEEEE
Q 008128 389 SLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSV 445 (577)
Q Consensus 389 ~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GA-kVVaI 445 (577)
++-.-.||||.+. +... =-+|.+|+|-|.|.||..+++-....|| +|++|
T Consensus 173 LgCGvsTG~GAa~------~~Ak-v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgv 223 (375)
T KOG0022|consen 173 LGCGVSTGYGAAW------NTAK-VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGV 223 (375)
T ss_pred eeccccccchhhh------hhcc-cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEE
Confidence 3445789999643 2111 2368999999999999999998888886 67665
No 293
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=81.41 E-value=2 Score=46.10 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=32.8
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
.|+.++|+|.|.|-+|+.+|+.|...|..-+.+.|.+
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4678999999999999999999999998668888864
No 294
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=81.40 E-value=2.4 Score=47.91 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=27.4
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++|.|.|.|.+|...|..|...|..| .+-|.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V-~l~D~ 38 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTV-LLYDA 38 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeE-EEEeC
Confidence 58999999999999999999999984 56676
No 295
>PLN02858 fructose-bisphosphate aldolase
Probab=81.26 E-value=5.4 Score=50.37 Aligned_cols=112 Identities=9% Similarity=0.058 Sum_probs=64.6
Q ss_pred CCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCc
Q 008128 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (577)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~ei 494 (577)
..++|.+.|.|++|...|+.|.+.|..| .+-|. +.++...+. +. ++...+.-.-
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v-~v~dr----------~~~~~~~l~---~~------------Ga~~~~s~~e 56 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKV-QAFEI----------STPLMEKFC---EL------------GGHRCDSPAE 56 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeE-EEEcC----------CHHHHHHHH---Hc------------CCeecCCHHH
Confidence 3568999999999999999999999985 45554 233332221 11 2222221111
Q ss_pred cccccceeecCCcccccchhhH---hhhh---ccCceEEEecCCCC-CCHHHHHHHHhCC--cEEec
Q 008128 495 WNERCDVAFPCASQNEIDQSDA---INLV---NSGCRILVEGSNMP-CTPEAVDVLKKAN--VLIAP 552 (577)
Q Consensus 495 l~~~cDIlIPcA~~n~It~enA---~~l~---~~~akiVvEgAN~p-~T~eA~~iL~~rG--I~viP 552 (577)
+-..||++|-|-.......+.. ..++ ..+.-+|-.+...| ++.+..+.+.++| +.|+=
T Consensus 57 ~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lD 123 (1378)
T PLN02858 57 AAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVD 123 (1378)
T ss_pred HHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 2347899998866433222221 1121 12333444455566 4566678889999 87653
No 296
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.17 E-value=2.3 Score=44.28 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=27.2
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++|+|.|.|.+|...|..+...|.. |.+-|.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~ 36 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVD-VLVFET 36 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCE-EEEEEC
Confidence 3899999999999999999999988 556665
No 297
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=81.08 E-value=11 Score=38.43 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=29.8
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEc
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISD 447 (577)
.+|.+|.|.|.|-||+.+++.+..+|++|++++.
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~ 187 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGR 187 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcC
Confidence 4678999999999999999999999999776654
No 298
>PRK08703 short chain dehydrogenase; Provisional
Probab=81.05 E-value=2.8 Score=41.01 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=29.5
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
+++|++++|.| .|.+|.++++.|.+.|++|+.++
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~ 37 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVA 37 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 57899999998 59999999999999999966553
No 299
>PRK06949 short chain dehydrogenase; Provisional
Probab=80.93 E-value=3 Score=40.97 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=30.5
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
.++++++++|.| .|.+|.++++.|.+.|++|+.++
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~ 40 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLAS 40 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 468899999998 59999999999999999976553
No 300
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.80 E-value=1.8 Score=47.69 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=32.0
Q ss_pred CCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
.-+.+++|.|.|+|.-|..+|++|.+.|++ |.++|.
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~~-V~~~D~ 45 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGAK-VTAFDK 45 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCCE-EEEECC
Confidence 345689999999999999999999999998 678886
No 301
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.71 E-value=3.1 Score=40.53 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=30.0
Q ss_pred CCCCceEEEEec-chHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+++|++++|.|. |.+|+.+++.|.+.|++|+.+ |.
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~-~r 37 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALI-DL 37 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence 478999999996 999999999999999996554 44
No 302
>PRK06125 short chain dehydrogenase; Provisional
Probab=80.65 E-value=3 Score=41.32 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=30.0
Q ss_pred CCCCCceEEEEec-chHHHHHHHHHHHCCCeEEEEE
Q 008128 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 412 ~~l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaIS 446 (577)
.+++|++++|.|. |.+|..+++.|.+.|++|+.++
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~ 38 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVA 38 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Confidence 4578999999995 8899999999999999866553
No 303
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=80.65 E-value=6.8 Score=36.93 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=25.6
Q ss_pred eEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+|+|.|.||.|..+|..|.+.|.. |.+-+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~-V~l~~~ 30 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHE-VTLWGR 30 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEE-EEEETS
T ss_pred CEEEECcCHHHHHHHHHHHHcCCE-EEEEec
Confidence 589999999999999999999977 455544
No 304
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=80.56 E-value=3.8 Score=43.92 Aligned_cols=101 Identities=16% Similarity=0.237 Sum_probs=61.8
Q ss_pred ceEEEEec-chHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceE--eCCC
Q 008128 417 LRCVVSGS-GKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKY--YDEA 492 (577)
Q Consensus 417 krVaIQGf-GNVG~~aA~~L~e~-GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~--i~~~ 492 (577)
++|+|.|. |-||+.+++.|.+. +.+++++.+++. ..|-.+.+ . ...+... ....+ .+.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~----sagk~~~~------~---~~~l~~~----~~~~~~~~~~~ 63 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE----SAGKPVSE------V---HPHLRGL----VDLNLEPIDEE 63 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch----hcCCChHH------h---Ccccccc----CCceeecCCHH
Confidence 47999997 99999999999876 788887766531 12211111 0 1111110 01111 1112
Q ss_pred CccccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCC
Q 008128 493 KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCT 536 (577)
Q Consensus 493 eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T 536 (577)
++. .+||+++-|. .+....+-+..+.+.++++|-=++..-..
T Consensus 64 ~~~-~~~DvVf~al-P~~~s~~~~~~~~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 64 EIA-EDADVVFLAL-PHGVSAELAPELLAAGVKVIDLSADFRLK 105 (346)
T ss_pred Hhh-cCCCEEEECC-CchHHHHHHHHHHhCCCEEEeCChhhhcC
Confidence 222 3799999876 56678888888888888887666555454
No 305
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.52 E-value=2.5 Score=47.09 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=31.9
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
++++++|.|.|+|..|..+|++|.+.|++ |.++|.+
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~-v~~~D~~ 39 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWCARHGAR-LRVADTR 39 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCE-EEEEcCC
Confidence 46789999999999999999999999998 5678873
No 306
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=80.52 E-value=2.7 Score=41.72 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=29.9
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
+++|++++|.| .|.+|..+|+.|.+.|++|+.+
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~ 40 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGI 40 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEe
Confidence 68899999998 5899999999999999998865
No 307
>PRK07774 short chain dehydrogenase; Provisional
Probab=80.50 E-value=3.1 Score=40.70 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=29.2
Q ss_pred CCCCceEEEEec-chHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaI 445 (577)
++++++++|.|. |-+|.++++.|.+.|++|+.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~ 36 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVA 36 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 468899999995 999999999999999997755
No 308
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=80.47 E-value=13 Score=39.40 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=67.6
Q ss_pred CCceEEEEecchHHHHHHHHHH-HCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCC
Q 008128 415 KGLRCVVSGSGKIAMHVLEKLI-AYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK 493 (577)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~-e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~e 493 (577)
..+++.|.|.|..|.+.++.|. ..+.+-|.|.+. +.++...+.+....+ + +.+...-++
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R----------~~~~a~~~a~~~~~~---------~-g~~v~~~~~ 187 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWAR----------DSAKAEALALQLSSL---------L-GIDVTAATD 187 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECC----------CHHHHHHHHHHHHhh---------c-CceEEEeCC
Confidence 4679999999999999999887 467666777776 233332222221110 0 111111112
Q ss_pred cc--ccccceeecCCcc--cccchhhHhhhhccCceEEEecCCCCCCHHHH-HHHHhCCcEEecc
Q 008128 494 PW--NERCDVAFPCASQ--NEIDQSDAINLVNSGCRILVEGSNMPCTPEAV-DVLKKANVLIAPA 553 (577)
Q Consensus 494 il--~~~cDIlIPcA~~--n~It~enA~~l~~~~akiVvEgAN~p~T~eA~-~iL~~rGI~viPD 553 (577)
+- -.+|||++=|+.. -.++.+. ++.++.+..=|++.|.-.|.+ ++|....++++-|
T Consensus 188 ~~~av~~aDiVvtaT~s~~p~i~~~~----l~~g~~i~~vg~~~p~~rEld~~~l~~a~~~vvD~ 248 (326)
T TIGR02992 188 PRAAMSGADIIVTTTPSETPILHAEW----LEPGQHVTAMGSDAEHKNEIDPAVIAKADHYVADR 248 (326)
T ss_pred HHHHhccCCEEEEecCCCCcEecHHH----cCCCcEEEeeCCCCCCceecCHHHHhccCEEEcCC
Confidence 21 1479999988763 3344432 355888888889988766654 4455554444333
No 309
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=80.37 E-value=46 Score=34.37 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=28.5
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCe-EEEE
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAI-PVSV 445 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAk-VVaI 445 (577)
..|.+|+|.|.|.||..+++.+...|++ |+++
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~ 194 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGV 194 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 3589999999999999999999999999 7664
No 310
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.20 E-value=2.6 Score=46.25 Aligned_cols=34 Identities=29% Similarity=0.302 Sum_probs=31.3
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++|++|.|.|+|.-|..+|++|.+.|++ |.++|.
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~-v~~~D~ 40 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAE-VIAWDD 40 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCE-EEEECC
Confidence 6789999999999999999999999998 677886
No 311
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=80.15 E-value=3 Score=40.96 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=29.2
Q ss_pred CCCCceEEEEec-chHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaI 445 (577)
+++|++++|.|. |.+|.++++.|.+.|++|+.+
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~ 37 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIA 37 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 467999999995 999999999999999997654
No 312
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.13 E-value=3.3 Score=40.50 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=29.9
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
.+++++++|.| .|.+|+++|+.|.+.|++|+.+.+
T Consensus 2 ~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 2 QISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 36789999998 799999999999999999875443
No 313
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.12 E-value=10 Score=41.33 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=30.1
Q ss_pred CCCCCceEEEEec-chHHHHHHHHHHHCCCeEEEE
Q 008128 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 412 ~~l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaI 445 (577)
..++|++++|.|. |.+|..+|+.|.+.|++|+.+
T Consensus 206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~ 240 (450)
T PRK08261 206 RPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCL 240 (450)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3578999999995 999999999999999997765
No 314
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.10 E-value=3 Score=40.51 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=29.2
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
+++|++++|.| .|.+|+++++.|.+.|++|+.+
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~ 35 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGV 35 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEE
Confidence 57899999998 6999999999999999997655
No 315
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=80.07 E-value=3.1 Score=41.41 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=29.0
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
++++++++|.| .|.+|.++|+.|.+.|++|+.+
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~ 35 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVL 35 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 46899999998 5899999999999999997654
No 316
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=80.06 E-value=3.1 Score=40.71 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=28.6
Q ss_pred CCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 414 l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
+++++|+|.| .|.+|.++++.|.+.|++|+.+
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~ 34 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIA 34 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 5688999998 7999999999999999997665
No 317
>PRK08339 short chain dehydrogenase; Provisional
Probab=80.03 E-value=3.1 Score=41.84 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=30.5
Q ss_pred CCCCCceEEEEec-chHHHHHHHHHHHCCCeEEEEEcC
Q 008128 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 412 ~~l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaISDs 448 (577)
.+++||+++|.|. |.+|..+|+.|.+.|++|+. .+.
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~-~~r 40 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVIL-LSR 40 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEE-EeC
Confidence 4689999999985 78999999999999999654 454
No 318
>PRK09186 flagellin modification protein A; Provisional
Probab=79.95 E-value=3 Score=40.98 Aligned_cols=32 Identities=25% Similarity=0.542 Sum_probs=28.6
Q ss_pred CCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 414 l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
++||+|+|.| .|.+|+++|+.|.+.|++|+.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~ 34 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAA 34 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 5789999999 5899999999999999997765
No 319
>PRK12742 oxidoreductase; Provisional
Probab=79.80 E-value=3.3 Score=40.12 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=29.6
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
.++|++|+|.| .|.+|+.+|+.|.+.|++|+.+.
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~ 37 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTY 37 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEec
Confidence 47899999999 59999999999999999976543
No 320
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=79.67 E-value=5.3 Score=42.38 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=30.6
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
-.|.+|+|.|.|.||..+++.+...|++|+++.++
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~ 216 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSS 216 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 36899999999999999999999999998776554
No 321
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=79.66 E-value=7.4 Score=35.90 Aligned_cols=63 Identities=19% Similarity=0.180 Sum_probs=52.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHc-CCCCCCceEEEEe--------cchHHHHHHHHHHHCCCeEEEEEcCCCe
Q 008128 389 SLRTEATGYGLVFFAQLILADM-NKELKGLRCVVSG--------SGKIAMHVLEKLIAYGAIPVSVSDAKGY 451 (577)
Q Consensus 389 ~~r~eATG~GV~~~~~~~l~~~-g~~l~GkrVaIQG--------fGNVG~~aA~~L~e~GAkVVaISDs~G~ 451 (577)
.++...|-|....+++.+.+.. ...++...|.|.| .|.-...+.+.|.+.|.+|+.|.|..-.
T Consensus 38 kg~kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~DvTpi 109 (114)
T TIGR03628 38 ADRDESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPI 109 (114)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEEcCCC
Confidence 4788999999998888887654 4568888999999 6787788899999999999999997543
No 322
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=79.65 E-value=2.9 Score=41.08 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=29.0
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
-+++++|+|.| .|.+|.++++.|.+.|++|+.+
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~ 42 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILL 42 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEE
Confidence 46899999998 6999999999999999997654
No 323
>PRK06398 aldose dehydrogenase; Validated
Probab=79.56 E-value=3.3 Score=41.33 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=30.1
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
+++|++++|.| .|-+|..+|+.|.+.|++|+.++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~ 37 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFD 37 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence 57899999999 58999999999999999987654
No 324
>PRK10637 cysG siroheme synthase; Provisional
Probab=79.56 E-value=2.4 Score=47.05 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=32.1
Q ss_pred CCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEc
Q 008128 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 412 ~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISD 447 (577)
.+++|++|+|.|.|+||..=++.|.+.|++|+-||-
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp 43 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNAL 43 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 478999999999999999999999999999776653
No 325
>PRK09072 short chain dehydrogenase; Provisional
Probab=79.47 E-value=3.4 Score=41.04 Aligned_cols=34 Identities=38% Similarity=0.488 Sum_probs=29.6
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
++++++++|.| .|-+|..+++.|.+.|++|+.++
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~ 36 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVG 36 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEE
Confidence 46789999998 69999999999999999976554
No 326
>PRK06153 hypothetical protein; Provisional
Probab=79.46 E-value=2 Score=47.14 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=31.7
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
.|++++|+|.|.|-+|+++++.|.+.|..=+.+.|.
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 467899999999999999999999999766777775
No 327
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=79.33 E-value=3.4 Score=40.77 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=30.3
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
.+++|++++|.| .|.+|+.+++.|.+.|++|+.++
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~ 42 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNG 42 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe
Confidence 458899999998 59999999999999999976553
No 328
>PRK12829 short chain dehydrogenase; Provisional
Probab=79.33 E-value=3.2 Score=40.81 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=29.4
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
.++++++.|.| .|.+|+++++.|.+.|++|+.+.
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~ 42 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCD 42 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 47889999998 59999999999999999965443
No 329
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.25 E-value=3.2 Score=42.80 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=26.5
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++|+|.|.|.+|..+|..|.+.|..| .+.|.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V-~l~d~ 34 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDV-TIYDI 34 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeE-EEEeC
Confidence 48999999999999999999999884 45554
No 330
>PLN02858 fructose-bisphosphate aldolase
Probab=79.24 E-value=6.7 Score=49.61 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=62.6
Q ss_pred CCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCc
Q 008128 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKP 494 (577)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~ei 494 (577)
..++|.+.|.|++|...|+.|...|..| .+.|. +.+++..+. . . ++...+...-
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V-~v~dr----------~~~~~~~l~---~-~-----------Ga~~~~s~~e 376 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSV-CGYDV----------YKPTLVRFE---N-A-----------GGLAGNSPAE 376 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEE-EEEeC----------CHHHHHHHH---H-c-----------CCeecCCHHH
Confidence 3578999999999999999999999985 45454 223322111 1 1 1211111111
Q ss_pred cccccceeecCCcc-----cccchh--hHhhhhccCceEEEecCCCC-CCHHHHHHHHh--CCcEEecc
Q 008128 495 WNERCDVAFPCASQ-----NEIDQS--DAINLVNSGCRILVEGSNMP-CTPEAVDVLKK--ANVLIAPA 553 (577)
Q Consensus 495 l~~~cDIlIPcA~~-----n~It~e--nA~~l~~~~akiVvEgAN~p-~T~eA~~iL~~--rGI~viPD 553 (577)
+-..|||++-|-.. .++.++ -...+ ..+.-+|-.....| ++.+..+.+++ +|+.|+=.
T Consensus 377 ~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l-~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDA 444 (1378)
T PLN02858 377 VAKDVDVLVIMVANEVQAENVLFGDLGAVSAL-PAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDA 444 (1378)
T ss_pred HHhcCCEEEEecCChHHHHHHHhchhhHHhcC-CCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEc
Confidence 23479999977652 222111 11222 22444444444455 44556677888 89887643
No 331
>PRK06197 short chain dehydrogenase; Provisional
Probab=79.15 E-value=2.9 Score=42.83 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=31.3
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
.+++|++|+|.| .|-+|.++|+.|.+.|++|+.++.
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r 48 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVR 48 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 467899999999 599999999999999999876654
No 332
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=79.12 E-value=8 Score=36.58 Aligned_cols=65 Identities=20% Similarity=0.179 Sum_probs=53.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHc-CCCCCCceEEEEe--------cchHHHHHHHHHHHCCCeEEEEEcCCCeee
Q 008128 389 SLRTEATGYGLVFFAQLILADM-NKELKGLRCVVSG--------SGKIAMHVLEKLIAYGAIPVSVSDAKGYLV 453 (577)
Q Consensus 389 ~~r~eATG~GV~~~~~~~l~~~-g~~l~GkrVaIQG--------fGNVG~~aA~~L~e~GAkVVaISDs~G~Iy 453 (577)
.|+...|-|....+++.+.+.. ...++...|.|-| .|.-...+.+.|...|.+|+.|.|..-.-|
T Consensus 45 kg~kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTpiPh 118 (132)
T PRK09607 45 ADRDESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPH 118 (132)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 4778899999998888888654 4678888999999 677778888999999999999999754443
No 333
>PRK12939 short chain dehydrogenase; Provisional
Probab=79.12 E-value=3.5 Score=40.12 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=29.6
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
++++++++|.| .|.+|+++|+.|.+.|++|+.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 47789999998 5999999999999999997766
No 334
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=79.11 E-value=2.6 Score=41.24 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=24.1
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEE
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaI 445 (577)
++|+|.|.|-||.-+|-.|.+.|.+|+++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~ 29 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGV 29 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEE
Confidence 58999999999999999999999997764
No 335
>PRK07062 short chain dehydrogenase; Provisional
Probab=79.06 E-value=3.5 Score=40.92 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=29.8
Q ss_pred CCCCCceEEEEec-chHHHHHHHHHHHCCCeEEEE
Q 008128 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 412 ~~l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaI 445 (577)
.+++|++++|.|. |.+|..+++.|.+.|++|+.+
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~ 38 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAIC 38 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE
Confidence 4688999999994 889999999999999997644
No 336
>PRK07035 short chain dehydrogenase; Provisional
Probab=78.95 E-value=3.5 Score=40.52 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=30.2
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
++++++|+|.| .|.+|.++++.|.+.|++|+.++
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 57899999998 79999999999999999987663
No 337
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=78.85 E-value=4.1 Score=40.45 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=31.1
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
.++++++++|.| .|.+|.++|+.|.+.|++|+.++.
T Consensus 3 ~~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~ 39 (261)
T PRK08936 3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYR 39 (261)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 468899999998 689999999999999999776544
No 338
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=78.78 E-value=4.6 Score=44.38 Aligned_cols=54 Identities=26% Similarity=0.278 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCCCCceEEEEec-----------------chHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCC
Q 008128 401 FFAQLILADMNKELKGLRCVVSGS-----------------GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDG 457 (577)
Q Consensus 401 ~~~~~~l~~~g~~l~GkrVaIQGf-----------------GNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~G 457 (577)
..+...+. ..+++|++|+|.|- |.+|..+|+.|.+.|++|+.++ ....+-.|.|
T Consensus 175 ~~~~~~~~--~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~-~~~~~~~~~~ 245 (399)
T PRK05579 175 AAAERALS--PKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS-GPVNLPTPAG 245 (399)
T ss_pred HHHHHHhh--hcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC-CCccccCCCC
Confidence 34444443 25789999999985 8899999999999999976554 3333334444
No 339
>PRK07576 short chain dehydrogenase; Provisional
Probab=78.72 E-value=3.6 Score=41.29 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=29.9
Q ss_pred CCCCceEEEEec-chHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaIS 446 (577)
++++++++|.|. |.+|..+++.|.+.|++|+.+.
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~ 40 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVAS 40 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 578999999985 8999999999999999976653
No 340
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.48 E-value=3.4 Score=45.16 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=30.9
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++.+++|.|.|.|..|..+|+.|.+.|++| .++|.
T Consensus 2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v-~~~d~ 36 (445)
T PRK04308 2 TFQNKKILVAGLGGTGISMIAYLRKNGAEV-AAYDA 36 (445)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEE-EEEeC
Confidence 367899999999999999999999999995 56775
No 341
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=78.48 E-value=3.8 Score=39.52 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=28.9
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
++.+++++|.| .|.+|.++++.|.+.|++|+.++
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~ 36 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYD 36 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 45678999998 69999999999999999965444
No 342
>PRK12937 short chain dehydrogenase; Provisional
Probab=78.48 E-value=4.1 Score=39.63 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=30.4
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
++++++++|.| .|.+|+++|+.|.+.|++++.+..
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~ 37 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYA 37 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence 57889999998 699999999999999999776544
No 343
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=78.30 E-value=3.9 Score=42.93 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=32.6
Q ss_pred CCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 411 g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
+.+..++||.|.| .|-+|+++++.|.+.|++|+++.+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4567889999999 699999999999999999887754
No 344
>PRK08264 short chain dehydrogenase; Validated
Probab=78.28 E-value=3.7 Score=39.90 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=29.0
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCC-eEEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGA-IPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GA-kVVaIS 446 (577)
++++++++|.| .|.+|+++|+.|.+.|+ +|+.+.
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~ 38 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAA 38 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEe
Confidence 46789999998 69999999999999999 765444
No 345
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=78.22 E-value=3.3 Score=43.34 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=29.5
Q ss_pred CCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 414 l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
++|++|+|.| .|-+|+++++.|.+.|.+|++++
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYS 35 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEe
Confidence 4689999999 59999999999999999988764
No 346
>PRK09135 pteridine reductase; Provisional
Probab=78.15 E-value=3.9 Score=39.68 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=29.6
Q ss_pred CCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 414 l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
.++++++|.| .|.+|+++++.|.+.|++|+.++-
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r 38 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYH 38 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 4678999998 699999999999999999877653
No 347
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=78.11 E-value=4.9 Score=42.98 Aligned_cols=57 Identities=21% Similarity=0.200 Sum_probs=44.5
Q ss_pred ccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 385 WSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 385 ~GGs~~r~eATG~GV~~~~~~~l~~~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
.-|.+|-+..|+|--++ +....-+|+||.|+| +|.||+-+-++..-+|.+||+++-|
T Consensus 130 ylg~lGm~glTAy~Gf~-------ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS 187 (343)
T KOG1196|consen 130 YLGLLGMPGLTAYAGFY-------EICSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGS 187 (343)
T ss_pred hhhccCCchhHHHHHHH-------HhcCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCC
Confidence 34666777777775444 333445779999999 6999999998888899999999987
No 348
>PLN02256 arogenate dehydrogenase
Probab=78.03 E-value=4.9 Score=42.46 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=29.1
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaIS 446 (577)
+-++++|.|.|+|++|+.+++.|.+.|.+|+++.
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d 66 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATS 66 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEE
Confidence 3477899999999999999999999998876543
No 349
>PRK05875 short chain dehydrogenase; Provisional
Probab=77.98 E-value=4.1 Score=40.74 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=29.9
Q ss_pred CCCCceEEEEec-chHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaIS 446 (577)
++++++++|.|. |.+|.++++.|.+.|++|+.++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~ 38 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVG 38 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 478899999995 8999999999999999976654
No 350
>PRK12746 short chain dehydrogenase; Provisional
Probab=77.93 E-value=4.2 Score=39.96 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=29.0
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
++++++++|.| .|-+|.++|+.|.+.|++|+.+
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~ 36 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIH 36 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 47789999999 6999999999999999997554
No 351
>PRK07814 short chain dehydrogenase; Provisional
Probab=77.89 E-value=3.8 Score=40.87 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=29.3
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
++++++++|.| .|-+|.++++.|.+.|++|+.++
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~ 41 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAA 41 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 47899999999 47899999999999999976553
No 352
>PRK07890 short chain dehydrogenase; Provisional
Probab=77.77 E-value=3.7 Score=40.39 Aligned_cols=34 Identities=29% Similarity=0.245 Sum_probs=29.2
Q ss_pred CCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 414 l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+++++++|.| .|.+|+++|+.|.+.|++|+.+ +.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~-~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLA-AR 37 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEE-eC
Confidence 5789999998 5899999999999999996644 54
No 353
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.65 E-value=4.1 Score=39.81 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=29.4
Q ss_pred CCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 414 l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+.|++++|.| .|.+|+++++.|.+.|++|+.+.+.
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r 37 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYAR 37 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4678999998 5899999999999999998755443
No 354
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=77.65 E-value=3.4 Score=42.97 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=31.3
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
++++++|.|.| .|-+|+++++.|.+.|.+|+++..
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r 38 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIR 38 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEec
Confidence 67899999999 599999999999999999887653
No 355
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=77.59 E-value=3.9 Score=40.44 Aligned_cols=36 Identities=33% Similarity=0.323 Sum_probs=30.3
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
..+++++++|.| .|.+|.++++.|.+.|++|+.+ |.
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~-~r 40 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLV-DR 40 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence 357899999998 5899999999999999997644 44
No 356
>PRK06196 oxidoreductase; Provisional
Probab=77.59 E-value=4.1 Score=42.13 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=31.1
Q ss_pred CCCCCCceEEEEec-chHHHHHHHHHHHCCCeEEEEE
Q 008128 411 NKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 411 g~~l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaIS 446 (577)
..+++|++|+|.|. |-+|.++|+.|.+.|++|+.++
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~ 57 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPA 57 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 45678999999995 8899999999999999977654
No 357
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=77.59 E-value=4 Score=40.38 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=29.6
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
+++|+++.|.| .|.+|.++|+.|.+.|++|+.+.
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~ 43 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSA 43 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEe
Confidence 57899999998 69999999999999999976543
No 358
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.55 E-value=4.7 Score=39.88 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=30.7
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
..++||+++|.| .|-+|..+|+.|.+.|++|+.+..
T Consensus 3 ~~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~ 39 (255)
T PRK06463 3 MRFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYN 39 (255)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 357899999998 699999999999999999876543
No 359
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=77.34 E-value=4.1 Score=40.34 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=29.3
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
+++|++|+|.| .|.+|..+++.|.+.|++|+.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~ 45 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIIT 45 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 58899999998 5899999999999999997654
No 360
>PRK06057 short chain dehydrogenase; Provisional
Probab=77.12 E-value=4.1 Score=40.29 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=29.3
Q ss_pred CCCCceEEEEec-chHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaI 445 (577)
.++|++|+|.|. |.+|.++++.|.+.|++|+.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~ 37 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVG 37 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 378999999995 999999999999999997655
No 361
>PRK07478 short chain dehydrogenase; Provisional
Probab=77.06 E-value=4.4 Score=40.00 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=29.5
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
++++++++|.| .|.+|.++++.|.+.|++|+.++
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~ 37 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGA 37 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 57889999998 58999999999999999976553
No 362
>PRK08226 short chain dehydrogenase; Provisional
Probab=76.93 E-value=4.2 Score=40.25 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=29.5
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
.+++++++|.| .|.+|+++++.|.+.|++|+.++
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~ 37 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGANLILLD 37 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEec
Confidence 36789999998 79999999999999999976553
No 363
>PRK05872 short chain dehydrogenase; Provisional
Probab=76.91 E-value=4.3 Score=41.67 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=29.6
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
.+++|++++|.| .|.+|..+|+.|.+.|++|+.+
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~ 39 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALV 39 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 468899999998 5999999999999999996544
No 364
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=76.77 E-value=4.3 Score=40.36 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=29.4
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
++++++++|.| .|.+|..+++.|.+.|++|+.+
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~ 39 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNA 39 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 57899999998 6999999999999999997654
No 365
>PRK07063 short chain dehydrogenase; Provisional
Probab=76.75 E-value=4.3 Score=40.19 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=29.0
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
.+++|+++|.| .|-+|.++++.|.+.|++|+.+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~ 37 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALA 37 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 47899999998 5899999999999999997654
No 366
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=76.74 E-value=4.8 Score=41.41 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=30.7
Q ss_pred CCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 414 l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
..|++|.|.| .|-+|+++++.|.+.|.+|+++.+.
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRD 38 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 4688999999 6999999999999999998877653
No 367
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=76.65 E-value=9.6 Score=34.54 Aligned_cols=65 Identities=18% Similarity=0.120 Sum_probs=51.4
Q ss_pred CCCCCcchHHHHHHHHHHHHHc-CCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeee
Q 008128 389 SLRTEATGYGLVFFAQLILADM-NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLV 453 (577)
Q Consensus 389 ~~r~eATG~GV~~~~~~~l~~~-g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iy 453 (577)
.+....|-|....+++.+.+.. ...++...|.+-|+|.=...+.+.|...|.+|+.|.|....-|
T Consensus 35 kg~rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~I~D~T~iph 100 (108)
T TIGR03632 35 KGSKKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTSIKDVTPIPH 100 (108)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 3566889998888887777653 4567888999999998667777888889999999999765444
No 368
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.62 E-value=4.9 Score=39.24 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=30.2
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++++++++|.| .|-+|+++++.|.+.|++|+.+..+
T Consensus 3 ~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (252)
T PRK06077 3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKK 39 (252)
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 46789999998 6889999999999999997665443
No 369
>PRK05867 short chain dehydrogenase; Provisional
Probab=76.60 E-value=4.3 Score=40.12 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=29.0
Q ss_pred CCCCceEEEEec-chHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaI 445 (577)
+++|++++|.|. |.+|.++++.|.+.|++|+.+
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~ 39 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIA 39 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 478999999995 899999999999999996654
No 370
>PRK07806 short chain dehydrogenase; Provisional
Probab=76.56 E-value=4.6 Score=39.51 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=30.4
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
+++++++.|.| .|-+|+++++.|.+.|++|+.++.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 47889999999 599999999999999999876643
No 371
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.50 E-value=3.6 Score=43.11 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=31.3
Q ss_pred CCCCCCceEEEEecc---hHHHHHHHHHHHCCCeEEEEEc
Q 008128 411 NKELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 411 g~~l~GkrVaIQGfG---NVG~~aA~~L~e~GAkVVaISD 447 (577)
..+++||+++|.|.| -+|+.+|+.|.+.|++||- .|
T Consensus 3 ~~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv-~~ 41 (299)
T PRK06300 3 KIDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILV-GT 41 (299)
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEE-Ee
Confidence 467899999999996 7999999999999999754 54
No 372
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=76.49 E-value=4.1 Score=40.50 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=29.6
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
+++||+++|.| .+.+|+.+|+.|.+.|++|+.+
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~ 38 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGV 38 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 57899999998 6899999999999999998765
No 373
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=76.47 E-value=15 Score=38.71 Aligned_cols=120 Identities=17% Similarity=0.162 Sum_probs=70.8
Q ss_pred eEEEEe-cchHHHHHHHHHHHCCCeEEEE-EcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCcc
Q 008128 418 RCVVSG-SGKIAMHVLEKLIAYGAIPVSV-SDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPW 495 (577)
Q Consensus 418 rVaIQG-fGNVG~~aA~~L~e~GAkVVaI-SDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil 495 (577)
+|+|-| .|++|+.+++.+.+.+..+|+. .|.. ..|-|..++ ... .+.-. -|+..+-+-++++
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~-----~~~~~~~~~---~g~-----~v~v~---~~~~~~~~l~~~~ 65 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGE-----EEAENEAEV---AGK-----EILLH---GPSEREARIGEVF 65 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEcccc-----ccccchhhh---ccc-----ceeee---ccccccccHHHHH
Confidence 789999 4999999999998889999886 4442 233343222 000 11000 0111111112344
Q ss_pred ccccc-eeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHHHHHh---CCcEEecchhc
Q 008128 496 NERCD-VAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKK---ANVLIAPAMAA 556 (577)
Q Consensus 496 ~~~cD-IlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~---rGI~viPD~~a 556 (577)
+..+| |+|--+....+ .+|+...+++++.+|+.=. ..|++..+.|.+ -++++.|.+..
T Consensus 66 ~~~~d~VvIDFT~P~~~-~~n~~~~~~~gv~~ViGTT--G~~~~~~~~l~~~~~i~~l~apNfSi 127 (275)
T TIGR02130 66 AKYPELICIDYTHPSAV-NDNAAFYGKHGIPFVMGTT--GGDREALAKLVADAKHPAVIAPNMAK 127 (275)
T ss_pred hhcCCEEEEECCChHHH-HHHHHHHHHCCCCEEEcCC--CCCHHHHHHHHHhcCCCEEEECcccH
Confidence 44588 99887765544 5677777788998888532 345555444433 46788887643
No 374
>PRK06500 short chain dehydrogenase; Provisional
Probab=76.45 E-value=4.2 Score=39.61 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=29.0
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
+++|++++|.| .|.+|+++++.|.+.|++|+.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~ 36 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAIT 36 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 46789999999 5999999999999999997654
No 375
>PRK06194 hypothetical protein; Provisional
Probab=76.34 E-value=4.5 Score=40.71 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=28.6
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
++++++++|.| .|.+|+++++.|.+.|++|+.+
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~ 36 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLA 36 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEE
Confidence 46789999998 5899999999999999996644
No 376
>PRK09242 tropinone reductase; Provisional
Probab=76.26 E-value=4.5 Score=39.97 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=29.7
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
+++||+++|.| .|.+|..+++.|.+.|++|+.++
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~ 40 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVA 40 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Confidence 57899999998 58999999999999999976553
No 377
>PLN02206 UDP-glucuronate decarboxylase
Probab=76.22 E-value=4.1 Score=45.09 Aligned_cols=37 Identities=35% Similarity=0.634 Sum_probs=31.7
Q ss_pred CCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 411 g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
|...++++|.|.| .|-||+++++.|.+.|.+|+++..
T Consensus 114 ~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~ 151 (442)
T PLN02206 114 GLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDN 151 (442)
T ss_pred ccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeC
Confidence 4455779999999 699999999999999999887643
No 378
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=76.19 E-value=5.3 Score=42.97 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=29.3
Q ss_pred CCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 415 KGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 415 ~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
.+++|.|.| .|-+|+|+++.|++.|++|.|..-
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR 38 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVR 38 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEc
Confidence 678999999 699999999999999999876544
No 379
>PRK07589 ornithine cyclodeaminase; Validated
Probab=76.14 E-value=44 Score=36.22 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=65.7
Q ss_pred CCceEEEEecchHHHHHHHHHHHC-CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCC
Q 008128 415 KGLRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK 493 (577)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~-GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~e 493 (577)
.-+++.|.|.|..|.+-++.+... ..+=|.|.+. +.++...+.+.-+.. .+ .....++-+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r----------~~~~a~~~~~~~~~~-~~--------~v~~~~~~~ 188 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDI----------DPAATAKLARNLAGP-GL--------RIVACRSVA 188 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeC----------CHHHHHHHHHHHHhc-CC--------cEEEeCCHH
Confidence 347899999999999888877653 3343444443 233332222211110 00 112222111
Q ss_pred ccccccceeecCCccc----ccchhhHhhhhccCceEEEecCCCCCCHHHHHHHHhCCcEEecchh
Q 008128 494 PWNERCDVAFPCASQN----EIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMA 555 (577)
Q Consensus 494 il~~~cDIlIPcA~~n----~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~rGI~viPD~~ 555 (577)
-.-..+||.+-|+... .+..+. ++.++.+++=|++.|--.|.+..+-++.-+|+ |..
T Consensus 189 ~av~~ADIIvtaT~S~~~~Pvl~~~~----lkpG~hV~aIGs~~p~~~Eld~~~l~~a~v~v-D~~ 249 (346)
T PRK07589 189 EAVEGADIITTVTADKTNATILTDDM----VEPGMHINAVGGDCPGKTELHPDILRRARVFV-EYE 249 (346)
T ss_pred HHHhcCCEEEEecCCCCCCceecHHH----cCCCcEEEecCCCCCCcccCCHHHHhcCEEEE-CCH
Confidence 1124799999777532 244443 35699999999999988887644433333444 653
No 380
>PRK05876 short chain dehydrogenase; Provisional
Probab=76.13 E-value=4.6 Score=41.05 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=30.1
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+++||+++|.| .|.+|+++|+.|.+.|++|+ ++|.
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv-~~~r 38 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVV-LGDV 38 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 47899999998 78999999999999999965 4554
No 381
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=76.04 E-value=6.8 Score=41.02 Aligned_cols=30 Identities=10% Similarity=0.073 Sum_probs=26.0
Q ss_pred eEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 418 rVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+|.|.|.|++|..++..|.+.|..|. +.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~-l~~r 31 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVN-LWGR 31 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEE-EEec
Confidence 69999999999999999999998864 5554
No 382
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=76.03 E-value=8.4 Score=43.24 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=34.8
Q ss_pred HcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 409 DMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 409 ~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
+...-|+||||++.|-..-..+++++|.+.|.+||.++...
T Consensus 307 d~~~~L~GKrvai~Gdp~~~i~LarfL~elGmevV~vgt~~ 347 (457)
T CHL00073 307 DYLDLVRGKSVFFMGDNLLEISLARFLIRCGMIVYEIGIPY 347 (457)
T ss_pred HHHHHHCCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeCC
Confidence 33445799999999987899999999999999999996653
No 383
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=76.00 E-value=3.8 Score=38.94 Aligned_cols=31 Identities=32% Similarity=0.452 Sum_probs=26.1
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEE
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPV 443 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVV 443 (577)
+++|++|+|+|.|+-|..+|..|.+.|.+|.
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~ 194 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAKAGKSVT 194 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTTTCSEEE
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHhhCCEEE
Confidence 6889999999999999999999999997744
No 384
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.83 E-value=5.3 Score=38.50 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=30.2
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+++.++|+|.| .|.+|+.+++.|.+.|++|+.++..
T Consensus 3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 3 SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 35678999998 6999999999999999997665554
No 385
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=75.82 E-value=11 Score=39.14 Aligned_cols=118 Identities=9% Similarity=0.088 Sum_probs=65.9
Q ss_pred ceEEEEecchHHHHHHHHHHHCCC---eEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGA---IPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK 493 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GA---kVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~e 493 (577)
++|.+.|+||+|+.+++.|.+.|. .-|.++|. +.+++.. ..+..+ .+..++..
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r----------~~~~~~~---l~~~~g-----------~~~~~~~~ 58 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL----------NVSNLKN---ASDKYG-----------ITITTNNN 58 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC----------CHHHHHH---HHHhcC-----------cEEeCCcH
Confidence 479999999999999999998874 12455554 2233321 211111 22222211
Q ss_pred ccccccceeecCCcccccchhhHhhhh---ccCceEEEecCCCCCCHHHHHHHHh--CCcEEecchhccccc
Q 008128 494 PWNERCDVAFPCASQNEIDQSDAINLV---NSGCRILVEGSNMPCTPEAVDVLKK--ANVLIAPAMAAGAGG 560 (577)
Q Consensus 494 il~~~cDIlIPcA~~n~It~enA~~l~---~~~akiVvEgAN~p~T~eA~~iL~~--rGI~viPD~~aNAGG 560 (577)
-+-.+|||+|-|-....+. +-.+.|. +.+ ++|+--+-+-....-.+.|.. +=+.++|-..+-.|-
T Consensus 59 e~~~~aDiIiLavkP~~~~-~vl~~l~~~~~~~-~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~ 128 (272)
T PRK12491 59 EVANSADILILSIKPDLYS-SVINQIKDQIKND-VIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGE 128 (272)
T ss_pred HHHhhCCEEEEEeChHHHH-HHHHHHHHhhcCC-cEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcC
Confidence 1234899999887754332 2223331 112 477776665555555555632 235788887665543
No 386
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=75.80 E-value=4.2 Score=42.80 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=31.4
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
.-+++++|.|.| .|-+|+++++.|.+.|.+|+++..
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 346789999999 599999999999999999887754
No 387
>PRK07411 hypothetical protein; Validated
Probab=75.78 E-value=3.4 Score=45.14 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=32.1
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
|+..+|.|.|.|-+|..+|+.|...|..=+++.|.+
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 567899999999999999999999998778888753
No 388
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.77 E-value=4.2 Score=45.24 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=31.5
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
.+.+++|.|.|+|..|..+|+.|.+.|++ |.++|.
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~-V~~~D~ 46 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCD-VVVADD 46 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCE-EEEECC
Confidence 46788999999999999999999999996 677886
No 389
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=75.75 E-value=4.2 Score=43.61 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=48.3
Q ss_pred eEEEEe-cchHHHHHHHHHHHCCCeEEE---E-Ec-CCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCC
Q 008128 418 RCVVSG-SGKIAMHVLEKLIAYGAIPVS---V-SD-AKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE 491 (577)
Q Consensus 418 rVaIQG-fGNVG~~aA~~L~e~GAkVVa---I-SD-s~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~ 491 (577)
+|+|.| .|.||+.++++|.+.+..++. + ++ +.|.-+.-.|.+ . ....++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~-------------------~-----~~~~~~- 55 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKE-------------------L-----EVNEAK- 55 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCee-------------------E-----EEEeCC-
Confidence 578999 799999999999987654332 2 22 122222111100 0 000011
Q ss_pred CCccccccceeecCCcccccchhhHhhhhccCceEE
Q 008128 492 AKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRIL 527 (577)
Q Consensus 492 ~eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiV 527 (577)
.+.| .+||+++-|+. ...+.+-++++.+.+|++|
T Consensus 56 ~~~~-~~~D~v~~a~g-~~~s~~~a~~~~~~G~~VI 89 (339)
T TIGR01296 56 IESF-EGIDIALFSAG-GSVSKEFAPKAAKCGAIVI 89 (339)
T ss_pred hHHh-cCCCEEEECCC-HHHHHHHHHHHHHCCCEEE
Confidence 1123 47898888774 4477788888877788655
No 390
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=75.72 E-value=4.2 Score=44.81 Aligned_cols=34 Identities=35% Similarity=0.323 Sum_probs=30.6
Q ss_pred CCCceEEEEecchHHHH-HHHHHHHCCCeEEEEEcC
Q 008128 414 LKGLRCVVSGSGKIAMH-VLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~-aA~~L~e~GAkVVaISDs 448 (577)
.++++|.|.|.|..|.. +|++|.+.|++ |.++|.
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~-V~~~D~ 39 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYK-VSGSDL 39 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCe-EEEECC
Confidence 46789999999999999 69999999999 577886
No 391
>PRK07856 short chain dehydrogenase; Provisional
Probab=75.65 E-value=5.2 Score=39.48 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=30.0
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
.+++|++++|.| .|-+|+.+++.|.+.|++|+.++
T Consensus 2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~ 37 (252)
T PRK07856 2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCG 37 (252)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 357899999998 58999999999999999976553
No 392
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=75.55 E-value=11 Score=40.77 Aligned_cols=109 Identities=15% Similarity=0.099 Sum_probs=69.4
Q ss_pred CceEEEEecchHHHHHHHHHHHC--CCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCC
Q 008128 416 GLRCVVSGSGKIAMHVLEKLIAY--GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK 493 (577)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~--GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~e 493 (577)
-.||+|.|.| .|..-++.+.+. ++++++|+|. |.++. .+..++.+ +..| -+-++
T Consensus 3 ~~rVgViG~~-~G~~h~~al~~~~~~~eLvaV~d~----------~~erA---~~~A~~~g-i~~y---------~~~ee 58 (343)
T TIGR01761 3 VQSVVVCGTR-FGQFYLAAFAAAPERFELAGILAQ----------GSERS---RALAHRLG-VPLY---------CEVEE 58 (343)
T ss_pred CcEEEEEeHH-HHHHHHHHHHhCCCCcEEEEEEcC----------CHHHH---HHHHHHhC-CCcc---------CCHHH
Confidence 4689999994 587777777764 6899999997 23333 22222222 1111 11133
Q ss_pred cc-ccccce-eecCCcccccchhhHhhhhccCceEEEecCCCCCC-HHHHHHH---HhCCcEEe
Q 008128 494 PW-NERCDV-AFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCT-PEAVDVL---KKANVLIA 551 (577)
Q Consensus 494 il-~~~cDI-lIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T-~eA~~iL---~~rGI~vi 551 (577)
++ +.++|+ .+|.++.+..+.+.|...++.|..+++|= |++ .||++++ +++|+.+.
T Consensus 59 ll~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EK---Pla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 59 LPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEH---PLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcC---CCCHHHHHHHHHHHHHcCCEEE
Confidence 44 245444 45666778888899988888899999984 443 4666554 56787765
No 393
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.52 E-value=4.3 Score=45.35 Aligned_cols=34 Identities=38% Similarity=0.615 Sum_probs=30.3
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+.|++|.|.|+|..|..++++|...|++| .++|.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v-~~~D~ 43 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARP-TVCDD 43 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEE-EEEcC
Confidence 47899999999999999999999999985 55885
No 394
>PRK07825 short chain dehydrogenase; Provisional
Probab=75.49 E-value=5.2 Score=40.01 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=28.6
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
+++|++++|.| .|.+|+.+++.|.+.|++|+.+
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~ 35 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIG 35 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 57789999998 5999999999999999996543
No 395
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.47 E-value=4.3 Score=40.15 Aligned_cols=33 Identities=24% Similarity=0.193 Sum_probs=28.9
Q ss_pred CCCCceEEEEec---chHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQGf---GNVG~~aA~~L~e~GAkVVaI 445 (577)
+++++++.|.|. |.+|.++|+.|.+.|++|+.+
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~ 37 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFT 37 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 578999999996 479999999999999997755
No 396
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=75.42 E-value=3.6 Score=44.44 Aligned_cols=33 Identities=21% Similarity=0.484 Sum_probs=29.4
Q ss_pred cCCCCCCceEEEEecchHHHHHHHHHHHCCCeE
Q 008128 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIP 442 (577)
Q Consensus 410 ~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkV 442 (577)
++.++.||||.|.|+|..|+..|+.|...|..+
T Consensus 156 ~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i 188 (336)
T KOG0069|consen 156 LGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVI 188 (336)
T ss_pred ccccccCCEEEEecCcHHHHHHHHhhhhcccee
Confidence 467899999999999999999999999999443
No 397
>CHL00041 rps11 ribosomal protein S11
Probab=75.38 E-value=11 Score=34.65 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=50.5
Q ss_pred CCCCcchHHHHHHHHHHHHHc-CCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeee
Q 008128 390 LRTEATGYGLVFFAQLILADM-NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLV 453 (577)
Q Consensus 390 ~r~eATG~GV~~~~~~~l~~~-g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iy 453 (577)
+....|-|....+++.+++.. ...++...|.|-|+|.=...+.+.|.+.|.+|+.|.|....-|
T Consensus 49 g~rK~T~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I~D~Tpiph 113 (116)
T CHL00041 49 GARKGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSSIRDVTPMPH 113 (116)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 556788888887777777653 4568888999999997666777888899999999999765444
No 398
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=75.30 E-value=4.2 Score=41.52 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=28.6
Q ss_pred CCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 415 KGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 415 ~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
+|++|.|.| .|-+|+++++.|.+.|.+|+++.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEE
Confidence 468999999 69999999999999999987665
No 399
>PRK05866 short chain dehydrogenase; Provisional
Probab=75.10 E-value=5.4 Score=41.06 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=30.1
Q ss_pred CCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 411 g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
+.++++++++|.| .|.+|.++|+.|.+.|++|+.+
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~ 70 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAV 70 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3457889999998 5999999999999999997654
No 400
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=75.00 E-value=4.9 Score=40.03 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=31.3
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
...++++|+|.| .|.+|+.+++.|.+.|++|++++.
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEec
Confidence 356789999999 599999999999999999887764
No 401
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=74.87 E-value=5.7 Score=38.87 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=31.0
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
.+++++++.|.| .|.+|+.+++.|.+.|++|+.+.-
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~ 40 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQ 40 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEec
Confidence 458899999998 589999999999999999776643
No 402
>PLN02253 xanthoxin dehydrogenase
Probab=74.82 E-value=5.3 Score=40.08 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=29.6
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
.+++|++++|.| .|.+|+++|+.|.+.|++|+.+
T Consensus 14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~ 48 (280)
T PLN02253 14 QRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIV 48 (280)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 357899999998 6899999999999999997654
No 403
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.69 E-value=5 Score=40.03 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=28.9
Q ss_pred CCCCceEEEEecc---hHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQGfG---NVG~~aA~~L~e~GAkVVaI 445 (577)
.++||+++|.|.+ .+|..+|+.|.+.|++|+.+
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~ 39 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYT 39 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEe
Confidence 4789999999975 79999999999999997654
No 404
>PRK12359 flavodoxin FldB; Provisional
Probab=74.66 E-value=5.3 Score=38.98 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=35.8
Q ss_pred CCCCCceEEEEecchH-HH---------HHHHHHHHCCCeEEEEEcCCCeeeCCC
Q 008128 412 KELKGLRCVVSGSGKI-AM---------HVLEKLIAYGAIPVSVSDAKGYLVDED 456 (577)
Q Consensus 412 ~~l~GkrVaIQGfGNV-G~---------~aA~~L~e~GAkVVaISDs~G~Iydp~ 456 (577)
.+|+||+|++-|+|+- +. .+.+.|.+.|+++|+-...+|+-|+..
T Consensus 75 ~dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s 129 (172)
T PRK12359 75 LNLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSS 129 (172)
T ss_pred CCCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccc
Confidence 4799999999999985 32 355666778999999888888877654
No 405
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=74.58 E-value=5.1 Score=39.09 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=28.2
Q ss_pred CCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 414 l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
+++++++|.| .|.+|+++++.|.+.|++|+.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~ 33 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVF 33 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe
Confidence 5789999998 6999999999999999997654
No 406
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=74.50 E-value=6 Score=42.23 Aligned_cols=103 Identities=15% Similarity=0.195 Sum_probs=58.7
Q ss_pred ceEEEEe-cchHHHHHHHHHHHCC-CeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCC-C
Q 008128 417 LRCVVSG-SGKIAMHVLEKLIAYG-AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEA-K 493 (577)
Q Consensus 417 krVaIQG-fGNVG~~aA~~L~e~G-AkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~-e 493 (577)
.+|+|.| .|-+|+.+++.|.+.. ..+++++++.-. .|-+..++ ..+.. .+.+... +....+.+.+ +
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~----~g~~~~~~---~~~~~-~~~~~~~---~~~~~~~~~~~~ 69 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRS----AGKRYGEA---VKWIE-PGDMPEY---VRDLPIVEPEPV 69 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhh----cCCcchhh---ccccc-cCCCccc---cceeEEEeCCHH
Confidence 3799999 5999999999998866 688888776321 23222111 00000 0001000 0011111111 1
Q ss_pred ccccccceeecCCcccccchhhHhhhhccCceEEEecCC
Q 008128 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSN 532 (577)
Q Consensus 494 il~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN 532 (577)
.+ .++|+++.|...+ ++.+.+..+.+.++++|.=++-
T Consensus 70 ~~-~~~DvVf~a~p~~-~s~~~~~~~~~~G~~VIDlsg~ 106 (341)
T TIGR00978 70 AS-KDVDIVFSALPSE-VAEEVEPKLAEAGKPVFSNASN 106 (341)
T ss_pred Hh-ccCCEEEEeCCHH-HHHHHHHHHHHCCCEEEECChh
Confidence 23 4799988877544 6777777777779998875543
No 407
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=74.38 E-value=5.3 Score=39.42 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=29.9
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++++++++|.| .|.+|.++|+.|.+.|++|+. .+.
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl-~~r 41 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIII-NDI 41 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEE-EcC
Confidence 57899999998 689999999999999999764 443
No 408
>PRK05854 short chain dehydrogenase; Provisional
Probab=74.38 E-value=5.3 Score=41.49 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=30.3
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
.+++|++++|.| .+-+|..+|+.|.+.|++|+.++
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~ 45 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPV 45 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 468899999998 58899999999999999976553
No 409
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.33 E-value=5.6 Score=38.53 Aligned_cols=36 Identities=36% Similarity=0.403 Sum_probs=30.5
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++.+++++|.| .|.+|..+++.|.+.|++|+.+.+.
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r 38 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDI 38 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47789999998 5999999999999999997766344
No 410
>PRK07326 short chain dehydrogenase; Provisional
Probab=74.32 E-value=5.6 Score=38.54 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=28.1
Q ss_pred CCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 414 l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
+.+++++|.| .|.+|+++++.|.+.|++|+.+
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~ 36 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAIT 36 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEe
Confidence 5688999998 5999999999999999997665
No 411
>PRK06198 short chain dehydrogenase; Provisional
Probab=74.30 E-value=5.4 Score=39.34 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=30.2
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
.+++++++|.| .|.+|..+++.|.+.|++.|.+.++
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r 39 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGR 39 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcC
Confidence 47889999998 5899999999999999994445555
No 412
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=74.30 E-value=9.2 Score=39.96 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=29.0
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
..|.+|+|.|.|.||..+++.+...|++.|.++|.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 46899999999999999999999999954444444
No 413
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.28 E-value=5.9 Score=38.59 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=28.7
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
++++++++|.| .|.+|.++++.|.+.|++|+.+
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~ 37 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLL 37 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEE
Confidence 46788999998 6899999999999999997654
No 414
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=74.28 E-value=16 Score=39.44 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.7
Q ss_pred CceEEEEe-cchHHHHHHHHHHHCC
Q 008128 416 GLRCVVSG-SGKIAMHVLEKLIAYG 439 (577)
Q Consensus 416 GkrVaIQG-fGNVG~~aA~~L~e~G 439 (577)
+++|+|.| -|.||+-+++.|.+..
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~ 25 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERH 25 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcC
Confidence 36899998 5999999999999854
No 415
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=74.27 E-value=4.9 Score=41.98 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=28.8
Q ss_pred CCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
.+++|.|.|.|++|..+|..|.+.|..| .+.|+
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V-~~~~r 35 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRV-RVWSR 35 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEE-EEEeC
Confidence 5679999999999999999999999986 45555
No 416
>PRK07577 short chain dehydrogenase; Provisional
Probab=74.22 E-value=5.5 Score=38.53 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=28.6
Q ss_pred CCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 415 KGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 415 ~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
++++++|.| .|-+|.++++.|.+.|++|+.++-
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r 35 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIAR 35 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 578899998 599999999999999999877654
No 417
>PRK05309 30S ribosomal protein S11; Validated
Probab=74.14 E-value=12 Score=35.05 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=50.5
Q ss_pred CCCCCcchHHHHHHHHHHHHHc-CCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeee
Q 008128 389 SLRTEATGYGLVFFAQLILADM-NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLV 453 (577)
Q Consensus 389 ~~r~eATG~GV~~~~~~~l~~~-g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iy 453 (577)
.+....|-|....+++.+.+.. ...++...|.|-|+|.=...+.+.|...|.+|+.|.|..-.-|
T Consensus 52 Kg~rK~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~~I~D~Tpiph 117 (128)
T PRK05309 52 KGSRKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVTSIKDVTPIPH 117 (128)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 3566788888887777776653 4567888999999998667777888889999999999754443
No 418
>PRK12827 short chain dehydrogenase; Provisional
Probab=74.12 E-value=5.4 Score=38.70 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=29.7
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
++++++++|.| .|-+|+++|+.|.+.|++|+.+.
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLD 37 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEc
Confidence 46789999998 69999999999999999976654
No 419
>PRK08265 short chain dehydrogenase; Provisional
Probab=74.10 E-value=5.6 Score=39.74 Aligned_cols=35 Identities=31% Similarity=0.352 Sum_probs=29.7
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++++++++|.| .|-+|..+|+.|.+.|++|+. .|.
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~-~~r 38 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAI-VDI 38 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE-EeC
Confidence 47899999998 599999999999999999654 444
No 420
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.94 E-value=5.2 Score=42.76 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=27.0
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++|+|.|.|.+|...|..+...|..| .+-|.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V-~l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDV-VAWDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeE-EEEeC
Confidence 58999999999999999999999995 45565
No 421
>PRK12744 short chain dehydrogenase; Provisional
Probab=73.93 E-value=5.6 Score=39.38 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=30.4
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
.+++++++|.| .|.+|.++|+.|.+.|++|+.+..
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEec
Confidence 57889999998 689999999999999999776653
No 422
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=73.81 E-value=4.9 Score=41.04 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=26.1
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++|+|.|.|++|..+|..|.+.|..|+ +.+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~-~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVT-LVAR 31 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE-EEEC
Confidence 479999999999999999999998854 4443
No 423
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=73.66 E-value=5.2 Score=43.11 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=29.2
Q ss_pred CCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
..-+|+|.|.|-||.++|+...-+||+ |+|-|.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~-Vtild~ 199 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGAD-VTILDL 199 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCe-eEEEec
Confidence 445899999999999999999999999 678885
No 424
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=73.64 E-value=2.1 Score=48.09 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=27.3
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEE
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPV 443 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVV 443 (577)
.|+||||+|.|+|..|..-|.-|...|..|+
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 4799999999999999988888888888755
No 425
>PRK06114 short chain dehydrogenase; Provisional
Probab=73.57 E-value=6.1 Score=39.15 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=29.9
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+++|++++|.| .|-+|.++|+.|.+.|++|+. .+.
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~-~~r 40 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVAL-FDL 40 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 57899999998 689999999999999999764 444
No 426
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=73.41 E-value=4.2 Score=41.93 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=23.2
Q ss_pred CCceEEEEecchHHHHHHHHHHHCC
Q 008128 415 KGLRCVVSGSGKIAMHVLEKLIAYG 439 (577)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~G 439 (577)
+..+|+|.|.|-+|.++++.|.+.|
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G 34 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLH 34 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHcc
Confidence 5689999999999999999999986
No 427
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=73.21 E-value=9 Score=41.28 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.5
Q ss_pred CCceEEEEe-cchHHHHHHHHHHHCCC
Q 008128 415 KGLRCVVSG-SGKIAMHVLEKLIAYGA 440 (577)
Q Consensus 415 ~GkrVaIQG-fGNVG~~aA~~L~e~GA 440 (577)
...+|+|.| .|.||+.+.++|.+.+.
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~h 32 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDF 32 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCC
Confidence 457899999 69999999999998665
No 428
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=73.18 E-value=5.2 Score=42.77 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=29.0
Q ss_pred CCceEEEEec-chHHHHHHHHHHHCCCeEEEEE
Q 008128 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 415 ~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaIS 446 (577)
++++|+|.|. |.||+++++.|.+.|..|++++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~ 52 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASD 52 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEE
Confidence 5689999995 9999999999999999988775
No 429
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=72.96 E-value=6.5 Score=34.35 Aligned_cols=105 Identities=21% Similarity=0.331 Sum_probs=58.3
Q ss_pred EEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCCccc--
Q 008128 419 CVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWN-- 496 (577)
Q Consensus 419 VaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~eil~-- 496 (577)
|+|.|+|.+|..+++.|.+.+.+|+.| |. |.+.. .+..+ .+ +.-+ +.++ ...+.|.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvi-d~----------d~~~~---~~~~~-~~-~~~i---~gd~---~~~~~l~~a 58 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVI-DR----------DPERV---EELRE-EG-VEVI---YGDA---TDPEVLERA 58 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-ES----------SHHHH---HHHHH-TT-SEEE---ES-T---TSHHHHHHT
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEE-EC----------CcHHH---HHHHh-cc-cccc---cccc---hhhhHHhhc
Confidence 689999999999999999966675544 43 22232 22221 11 1100 0000 1112231
Q ss_pred --cccceeecCCcccccchhhHhhhh--ccCceEEEecCCCCCCHHHHHHHHhCCcE
Q 008128 497 --ERCDVAFPCASQNEIDQSDAINLV--NSGCRILVEGSNMPCTPEAVDVLKKANVL 549 (577)
Q Consensus 497 --~~cDIlIPcA~~n~It~enA~~l~--~~~akiVvEgAN~p~T~eA~~iL~~rGI~ 549 (577)
.++|.++=++.....|-..+..+. ....++|+..- +++..+.|++.|+-
T Consensus 59 ~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~----~~~~~~~l~~~g~d 111 (116)
T PF02254_consen 59 GIEKADAVVILTDDDEENLLIALLARELNPDIRIIARVN----DPENAELLRQAGAD 111 (116)
T ss_dssp TGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEEES----SHHHHHHHHHTT-S
T ss_pred CccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCcC
Confidence 478888877765555544433332 23578988764 35667888888863
No 430
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=72.88 E-value=6 Score=39.09 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=28.9
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
.+++++++|.| .|-+|.++|+.|.+.|++|+.+
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~ 36 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIA 36 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 36789999998 5999999999999999997654
No 431
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=72.86 E-value=42 Score=35.08 Aligned_cols=33 Identities=24% Similarity=0.139 Sum_probs=28.6
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEE
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaIS 446 (577)
-.|.+|.|.|.|.+|..+++.+...|++|+++.
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~ 196 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMT 196 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEe
Confidence 358999999999999999999889999977653
No 432
>PRK08589 short chain dehydrogenase; Validated
Probab=72.84 E-value=6.3 Score=39.68 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=29.1
Q ss_pred CCCCceEEEEec-chHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaI 445 (577)
.++||+++|.|. |-+|..+|+.|.+.|++|+.+
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~ 36 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAV 36 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 478999999995 889999999999999997655
No 433
>PRK08278 short chain dehydrogenase; Provisional
Probab=72.75 E-value=6.5 Score=39.68 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=29.8
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
++++++++|.| .|-+|.++|+.|.+.|++|+.++
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 37 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAA 37 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 46889999998 69999999999999999976654
No 434
>PRK09620 hypothetical protein; Provisional
Probab=72.48 E-value=6.5 Score=39.97 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=29.2
Q ss_pred CCCceEEEEec-----------------chHHHHHHHHHHHCCCeEEEEEcC
Q 008128 414 LKGLRCVVSGS-----------------GKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 414 l~GkrVaIQGf-----------------GNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++|++|.|.+- |-+|+++|+.|.+.|+.|+.|...
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46888888843 999999999999999998877643
No 435
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=72.47 E-value=9.3 Score=39.97 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=31.7
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
...+++++|.| ++..|...|+.|.+.|..+|-|+=+
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARR 39 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 45789999999 6999999999999999998877653
No 436
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=72.36 E-value=12 Score=37.99 Aligned_cols=34 Identities=35% Similarity=0.510 Sum_probs=28.9
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCe-EEEEEcC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAI-PVSVSDA 448 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAk-VVaISDs 448 (577)
..|.+|+|.|.|.||..+++.+...|++ |+++ |.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~-~~ 153 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAA-DP 153 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE-CC
Confidence 3789999999999999999999999997 5554 54
No 437
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=72.34 E-value=5.9 Score=37.00 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=27.0
Q ss_pred EEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 419 CVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 419 VaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
|+|.| .|.+|+.+++.|.+.|.+|++++-+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecC
Confidence 67888 5999999999999999999998865
No 438
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=72.32 E-value=17 Score=40.37 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=27.5
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEE
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaI 445 (577)
.|+.|.|.|-||.-+|-.+...|.+|+++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~ 38 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGV 38 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeE
Confidence 79999999999999999999999999876
No 439
>PLN02214 cinnamoyl-CoA reductase
Probab=72.30 E-value=6 Score=41.64 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=30.1
Q ss_pred CCCceEEEEec-chHHHHHHHHHHHCCCeEEEEEc
Q 008128 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 414 l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaISD 447 (577)
+++++|+|.|. |-+|+++++.|.+.|.+|++++-
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r 42 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVR 42 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 57889999996 99999999999999999887653
No 440
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.30 E-value=5.9 Score=40.21 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=29.6
Q ss_pred CCCCceEEEEecc---hHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQGfG---NVG~~aA~~L~e~GAkVVaISDs 448 (577)
.++||+++|.|.+ .+|..+|+.|.+.|++|+. .+.
T Consensus 4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~-~~r 41 (271)
T PRK06505 4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAF-TYQ 41 (271)
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEE-ecC
Confidence 4789999999986 6999999999999999654 443
No 441
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=72.27 E-value=5.7 Score=41.82 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=30.6
Q ss_pred CCCCCCceEEEEec---chHHHHHHHHHHHCCCeEEE
Q 008128 411 NKELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVS 444 (577)
Q Consensus 411 g~~l~GkrVaIQGf---GNVG~~aA~~L~e~GAkVVa 444 (577)
..+|+||+++|.|. .-.|..+|+.|.+.|++||.
T Consensus 4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV 40 (303)
T ss_pred CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence 46799999999998 56999999999999999876
No 442
>PRK06914 short chain dehydrogenase; Provisional
Probab=72.21 E-value=6.4 Score=39.40 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=28.2
Q ss_pred CCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 415 KGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 415 ~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
++++++|.| .|-+|.++++.|.+.|++|++++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~ 34 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATM 34 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEe
Confidence 578889988 69999999999999999987764
No 443
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=72.15 E-value=12 Score=39.57 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=33.8
Q ss_pred HHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 407 LADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 407 l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+...+....|.+|+|.|.|.||..+++.+...|++|+.+++.
T Consensus 172 l~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~ 213 (357)
T PLN02514 172 LSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSS 213 (357)
T ss_pred HHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 334444457899999999999999999999999998777653
No 444
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=72.14 E-value=6.5 Score=39.21 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=30.4
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
.++++++++|.| .|.+|..+++.|.+.|++|+.+ +.
T Consensus 6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~-~~ 42 (265)
T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAKAGATIVFN-DI 42 (265)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE-eC
Confidence 467899999998 5899999999999999997644 44
No 445
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.12 E-value=5.9 Score=39.79 Aligned_cols=34 Identities=32% Similarity=0.277 Sum_probs=29.3
Q ss_pred CCCCCceEEEEec---chHHHHHHHHHHHCCCeEEEE
Q 008128 412 KELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 412 ~~l~GkrVaIQGf---GNVG~~aA~~L~e~GAkVVaI 445 (577)
.+++||+++|.|. +.+|..+|+.|.+.|++|+.+
T Consensus 3 ~~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~ 39 (257)
T PRK08594 3 LSLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFT 39 (257)
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEe
Confidence 3578999999996 589999999999999996643
No 446
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.04 E-value=6.2 Score=40.81 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=31.2
Q ss_pred CCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 411 g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
..+++|++++|.| .|.+|..+|+.|.+.|++|+ +.|.
T Consensus 7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv-~~~~ 44 (306)
T PRK07792 7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVV-VNDV 44 (306)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EecC
Confidence 4578999999998 58899999999999999965 4443
No 447
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=71.97 E-value=6.6 Score=39.01 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=28.3
Q ss_pred CCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 414 l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
++|++++|.| .|.+|+++|+.|.+.|++|+.+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~ 36 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVL 36 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 6789999998 5889999999999999997654
No 448
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.90 E-value=6 Score=39.41 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=29.1
Q ss_pred CCCCceEEEEec---chHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQGf---GNVG~~aA~~L~e~GAkVVaI 445 (577)
.++||+++|.|. +.+|.++|+.|.+.|++|+.+
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFT 38 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEE
Confidence 588999999997 479999999999999997654
No 449
>PLN02427 UDP-apiose/xylose synthase
Probab=71.87 E-value=6.3 Score=41.97 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=30.8
Q ss_pred CCCCCCceEEEEe-cchHHHHHHHHHHHC-CCeEEEEE
Q 008128 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAY-GAIPVSVS 446 (577)
Q Consensus 411 g~~l~GkrVaIQG-fGNVG~~aA~~L~e~-GAkVVaIS 446 (577)
|+.++.++|.|.| .|-+|+++++.|.+. |.+|+++.
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 5567778999999 599999999999998 58888775
No 450
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=71.74 E-value=11 Score=40.49 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=30.3
Q ss_pred CCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
.|.+|+|.|.|.||..+++.+...|++|+++.+.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~ 211 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS 211 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC
Confidence 6899999999999999999999999998776543
No 451
>PLN00198 anthocyanidin reductase; Provisional
Probab=71.64 E-value=6.4 Score=40.89 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=29.6
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
..++++|.|.| .|-+|+++++.|.+.|++|+++.
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~ 40 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTV 40 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEE
Confidence 45689999998 79999999999999999986554
No 452
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=71.50 E-value=4.5 Score=43.16 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=27.8
Q ss_pred CceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 416 GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
-++|+|.|.|.+|...|..+...|.. |.+.|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~-V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYD-VVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCc-eEEEeCC
Confidence 36899999999999999999885677 6678873
No 453
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=71.44 E-value=5.2 Score=42.42 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=28.4
Q ss_pred CCceEEEEecchHHHHHHHHHHHCCC-eEEEEEcC
Q 008128 415 KGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSVSDA 448 (577)
Q Consensus 415 ~GkrVaIQGfGNVG~~aA~~L~e~GA-kVVaISDs 448 (577)
.+++|+|.|.|+||+.+|-.|...|. .-+.+.|.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 56799999999999999999988875 23667776
No 454
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=71.26 E-value=7 Score=39.17 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=30.3
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
.++++++++|.| .|.+|+++++.|.+.|++|+. .+.
T Consensus 6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~-~~r 42 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAI-LDR 42 (278)
T ss_pred eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 467899999998 589999999999999999654 444
No 455
>PRK12747 short chain dehydrogenase; Provisional
Probab=71.19 E-value=7.2 Score=38.40 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=27.9
Q ss_pred CCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 414 l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
++||+++|.| .|-+|.++|+.|.+.|++|+.+
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~ 34 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIH 34 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEE
Confidence 4689999998 6899999999999999997654
No 456
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=71.15 E-value=8.1 Score=37.76 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=30.0
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
+++++++.|.| .|-+|+++|+.|.+.|++|+.+..
T Consensus 3 ~~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~ 38 (247)
T PRK12935 3 QLNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYN 38 (247)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcC
Confidence 46789999998 799999999999999999875443
No 457
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=71.12 E-value=9 Score=40.70 Aligned_cols=56 Identities=27% Similarity=0.319 Sum_probs=38.9
Q ss_pred CCcchHHHHHHHH-HHHHHc-CCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 392 TEATGYGLVFFAQ-LILADM-NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 392 ~eATG~GV~~~~~-~~l~~~-g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
.+|..+++.+++- .++... +.. .|.+|.|.| .|.||..+++++...|+++|+++.+
T Consensus 118 ~eAAal~~~~~TA~~~l~~~~~l~-~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s 176 (326)
T COG0604 118 EEAAALPLAGLTAWLALFDRAGLK-PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSS 176 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecC
Confidence 3566666655433 233332 222 289999999 8999999999999999776666665
No 458
>PRK08017 oxidoreductase; Provisional
Probab=71.09 E-value=6.5 Score=38.56 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=26.7
Q ss_pred ceEEEEec-chHHHHHHHHHHHCCCeEEEEE
Q 008128 417 LRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 417 krVaIQGf-GNVG~~aA~~L~e~GAkVVaIS 446 (577)
++++|.|. |.+|+.+++.|.+.|++|+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~ 33 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAAC 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 58999997 9999999999999999977654
No 459
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=70.97 E-value=11 Score=35.87 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=32.8
Q ss_pred CCCCCceEEEEecchH---H-------HHHHHHHHHCCCeEEEEEcCCCeeeC
Q 008128 412 KELKGLRCVVSGSGKI---A-------MHVLEKLIAYGAIPVSVSDAKGYLVD 454 (577)
Q Consensus 412 ~~l~GkrVaIQGfGNV---G-------~~aA~~L~e~GAkVVaISDs~G~Iyd 454 (577)
.+++||+|+|.|+|+- + ..+.+.|.+.|+++|+-...+|+.++
T Consensus 74 ~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~~~ 126 (167)
T TIGR01752 74 LDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFE 126 (167)
T ss_pred CCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCcccc
Confidence 4789999999999864 1 23445666789999999888886553
No 460
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=70.92 E-value=55 Score=34.41 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=26.6
Q ss_pred CCceEEEEe----cchHHHHHHHHHHHCCCeEEEEE
Q 008128 415 KGLRCVVSG----SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 415 ~GkrVaIQG----fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
+|.||+|+= .|.--..+++.+.+.|++|+++.
T Consensus 193 ~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~ 228 (268)
T TIGR01743 193 TGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIG 228 (268)
T ss_pred CcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEE
Confidence 689998873 57777888899999999998875
No 461
>PLN02572 UDP-sulfoquinovose synthase
Probab=70.91 E-value=5.9 Score=43.70 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=30.9
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
..+++++|.|.| .|-+|+++++.|.+.|+.|+++.
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 468899999998 59999999999999999977654
No 462
>PRK12743 oxidoreductase; Provisional
Probab=70.90 E-value=7.6 Score=38.49 Aligned_cols=33 Identities=12% Similarity=-0.056 Sum_probs=27.9
Q ss_pred CceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 416 GLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 416 GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+++|+|.| .|.+|+.+++.|.+.|++|+.+..+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~ 35 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHS 35 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 57899988 5889999999999999998766443
No 463
>PLN02775 Probable dihydrodipicolinate reductase
Probab=70.84 E-value=28 Score=36.93 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=70.8
Q ss_pred ceEEEEec-chHHHHHHHHHHHCCCeEEEEEcCCCeeeCCCCCCHH-hHhHHHHHHhhcCcccccccccCCceEe--CC-
Q 008128 417 LRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYM-KISFLRDIKSQQRSLRDYSKTYARSKYY--DE- 491 (577)
Q Consensus 417 krVaIQGf-GNVG~~aA~~L~e~GAkVVaISDs~G~Iydp~GLD~e-~L~~l~~~k~~~g~l~~y~~~~p~a~~i--~~- 491 (577)
.+|+|-|+ |++|+.+++.+.+.+..+|+..|... +|-|.. ++ . + . +.... ++
T Consensus 12 i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~-----~~~~~~~~~---~------g----~-----~v~~~~~~dl 68 (286)
T PLN02775 12 IPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGP-----AGVGVTVEV---C------G----V-----EVRLVGPSER 68 (286)
T ss_pred CeEEEECCCChHHHHHHHHHhcCCCEEEEEecccc-----cccccccee---c------c----c-----eeeeecCccH
Confidence 58999995 99999999999889999999998733 333322 11 0 0 0 01111 00
Q ss_pred CCcc-cc---ccc-eeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHHHHHhC---CcEEecchh
Q 008128 492 AKPW-NE---RCD-VAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKA---NVLIAPAMA 555 (577)
Q Consensus 492 ~eil-~~---~cD-IlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL~~r---GI~viPD~~ 555 (577)
++.+ +. .+| |+|--+..... .+|++..+++++.+|+.=. + .|++-.+.+.++ +|++.|.+.
T Consensus 69 ~~~l~~~~~~~~~~VvIDFT~P~a~-~~~~~~~~~~g~~~VvGTT-G-~~~e~l~~~~~~~~i~vv~apNfS 137 (286)
T PLN02775 69 EAVLSSVKAEYPNLIVVDYTLPDAV-NDNAELYCKNGLPFVMGTT-G-GDRDRLLKDVEESGVYAVIAPQMG 137 (286)
T ss_pred HHHHHHhhccCCCEEEEECCChHHH-HHHHHHHHHCCCCEEEECC-C-CCHHHHHHHHhcCCccEEEECccc
Confidence 1222 22 577 78877655443 5677777788999988543 2 455544444444 678888764
No 464
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=70.76 E-value=7.2 Score=38.55 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=29.1
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
.+++++|+|.| .|.+|.++++.|.+.|++|+.+
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~ 41 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVS 41 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 46799999998 6999999999999999997754
No 465
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=70.75 E-value=6.3 Score=42.23 Aligned_cols=102 Identities=11% Similarity=0.170 Sum_probs=56.0
Q ss_pred ceEEEEe-cchHHHHHHHHHHHCC-CeEEEE-EcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCCCC
Q 008128 417 LRCVVSG-SGKIAMHVLEKLIAYG-AIPVSV-SDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAK 493 (577)
Q Consensus 417 krVaIQG-fGNVG~~aA~~L~e~G-AkVVaI-SDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~~e 493 (577)
.+|+|.| .|.+|+.+++.|.+.. .+++++ .+. ...|-++..+ ..+.. .+.+...... ...+..+. +
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~-----~~~G~~~~~~---~~~~~-~~~~~~~~~~-~~v~~~~~-~ 72 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASE-----RSAGKTYGEA---VRWQL-DGPIPEEVAD-MEVVSTDP-E 72 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh-----hhcCCccccc---ccccc-cccccccccc-eEEEeCCH-H
Confidence 6899998 8999999999998764 488887 332 1122221111 00000 0000000000 00111111 1
Q ss_pred ccccccceeecCCcccccchhhHhhhhccCceEEEecC
Q 008128 494 PWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGS 531 (577)
Q Consensus 494 il~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgA 531 (577)
.+ .++|+++.|... .+..+.++.+.+.++++|.=++
T Consensus 73 ~~-~~~DvVf~a~p~-~~s~~~~~~~~~~G~~vIDls~ 108 (349)
T PRK08664 73 AV-DDVDIVFSALPS-DVAGEVEEEFAKAGKPVFSNAS 108 (349)
T ss_pred Hh-cCCCEEEEeCCh-hHHHHHHHHHHHCCCEEEECCc
Confidence 23 479999886554 4667777777777898887665
No 466
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=70.65 E-value=18 Score=34.72 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=31.7
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCce-EEEEecchHHH---HHHHHHHHCCCeEEE
Q 008128 394 ATGYGLVFFAQLILADMNKELKGLR-CVVSGSGKIAM---HVLEKLIAYGAIPVS 444 (577)
Q Consensus 394 ATG~GV~~~~~~~l~~~g~~l~Gkr-VaIQGfGNVG~---~aA~~L~e~GAkVVa 444 (577)
..|++++..++..+. ..+.++ +++.|.||=|. .+|+.|.+.|.+|..
T Consensus 7 ~Ag~~~a~~i~~~~~----~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 7 NAGRAIAELIRKLFG----SPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp HHHHHHHHHHHHHST----CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhc----ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 457777776665553 334444 57789988765 788999999999554
No 467
>PRK06182 short chain dehydrogenase; Validated
Probab=70.60 E-value=7.3 Score=39.01 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=28.0
Q ss_pred CCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 415 KGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 415 ~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
++++++|.| .|.+|+++++.|.+.|++|++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~ 34 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAA 34 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 578999999 59999999999999999987653
No 468
>PLN02686 cinnamoyl-CoA reductase
Probab=70.54 E-value=7.3 Score=41.63 Aligned_cols=38 Identities=13% Similarity=0.242 Sum_probs=32.7
Q ss_pred CCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 411 g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
..+.++++|.|.| .|-+|+++++.|.+.|++|+++++.
T Consensus 48 ~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~ 86 (367)
T PLN02686 48 GADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDT 86 (367)
T ss_pred ccCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3567889999999 5999999999999999998876653
No 469
>PRK09134 short chain dehydrogenase; Provisional
Probab=70.50 E-value=8.7 Score=38.04 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=30.0
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+..+++++|.| .|.+|.++++.|.+.|++|+.+...
T Consensus 6 ~~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~ 42 (258)
T PRK09134 6 MAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNR 42 (258)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 35688999998 6899999999999999998765443
No 470
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=70.43 E-value=15 Score=33.26 Aligned_cols=64 Identities=22% Similarity=0.155 Sum_probs=50.1
Q ss_pred CCCCcchHHHHHHHHHHHHHc-CCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCCCeee
Q 008128 390 LRTEATGYGLVFFAQLILADM-NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLV 453 (577)
Q Consensus 390 ~r~eATG~GV~~~~~~~l~~~-g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~G~Iy 453 (577)
+....|-|....+++.+++.. ...++...|.|-|+|.--..+.+.|...|.+|+.|.|..-.=|
T Consensus 36 ~~rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~I~D~T~iph 100 (110)
T PF00411_consen 36 GARKSTPYAAQQAAEKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVSITDVTPIPH 100 (110)
T ss_dssp TTCGSSHHHHHHHHHHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEEEEEETT--S
T ss_pred cccccCHHHHHHHHHHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEEEEeecCCCC
Confidence 445778888887877777654 4567778899999999888889999999999999999755444
No 471
>PRK05993 short chain dehydrogenase; Provisional
Probab=70.40 E-value=7.2 Score=39.37 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=27.7
Q ss_pred CCceEEEEec-chHHHHHHHHHHHCCCeEEEEE
Q 008128 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 415 ~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaIS 446 (577)
.+++|+|.|. |.+|.++|+.|.+.|++|+.++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~ 35 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATC 35 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 3678999995 9999999999999999977654
No 472
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=70.25 E-value=6.6 Score=46.26 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=27.5
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++|+|.|.|.+|...|..+...|.. |.+.|.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~ 344 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVP-VIMKDI 344 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCe-EEEEeC
Confidence 5899999999999999999999998 556676
No 473
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.17 E-value=30 Score=37.69 Aligned_cols=113 Identities=19% Similarity=0.293 Sum_probs=73.5
Q ss_pred ceEEEEecchHHHHHHHHHHH---CCCeEEEEEcCCCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEeCC-C
Q 008128 417 LRCVVSGSGKIAMHVLEKLIA---YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDE-A 492 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e---~GAkVVaISDs~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i~~-~ 492 (577)
.|+-|.|.|..++.+++.|.. .+++||+|+|. +.+.. +++.+.+ .+ |+.+.++. +
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~----------s~~~A---~~fAq~~-~~-------~~~k~y~syE 65 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP----------SLERA---KEFAQRH-NI-------PNPKAYGSYE 65 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc----------cHHHH---HHHHHhc-CC-------CCCccccCHH
Confidence 578899999999999998874 47999999987 22221 2332222 22 22222222 4
Q ss_pred Ccc-ccccceeecCCcccccchhhHhhhhccCceEEEecCCCCCCHHHHHHH---HhCCcEEe
Q 008128 493 KPW-NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL---KKANVLIA 551 (577)
Q Consensus 493 eil-~~~cDIlIPcA~~n~It~enA~~l~~~~akiVvEgAN~p~T~eA~~iL---~~rGI~vi 551 (577)
+++ +.+||+++= +++|..+-+-+..+++.+=.+.||=.=.-.-+|+++++ ++||+.+.
T Consensus 66 eLakd~~vDvVyi-~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~m 127 (351)
T KOG2741|consen 66 ELAKDPEVDVVYI-STPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFM 127 (351)
T ss_pred HHhcCCCcCEEEe-CCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEE
Confidence 444 567888654 55777788888777766656889865444457788777 56786554
No 474
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=70.14 E-value=13 Score=38.81 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=32.4
Q ss_pred HHHcCCCCCCceEEEEecchHHHHHHHHHHHCCC-eEEEEEc
Q 008128 407 LADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSVSD 447 (577)
Q Consensus 407 l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GA-kVVaISD 447 (577)
+...+.--.|.+|.|.|.|.||+.+++.+...|+ +|++++.
T Consensus 169 l~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~ 210 (361)
T cd08231 169 LDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDG 210 (361)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3344433478999999999999999999999999 7766643
No 475
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.93 E-value=7.7 Score=38.80 Aligned_cols=36 Identities=31% Similarity=0.257 Sum_probs=30.0
Q ss_pred CCCCCceEEEEecc---hHHHHHHHHHHHCCCeEEEEEcC
Q 008128 412 KELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 412 ~~l~GkrVaIQGfG---NVG~~aA~~L~e~GAkVVaISDs 448 (577)
.+++||+++|.|.+ -+|..+|+.|.+.|++|+ +.+.
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~-l~~r 44 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELA-VTYL 44 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEE-EEeC
Confidence 35789999999965 699999999999999954 4454
No 476
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=69.88 E-value=7 Score=39.66 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=26.6
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+++.|.|.||+|..+|+.|...|..|+ |+.+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~-igs~ 32 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVI-IGSS 32 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEE-EecC
Confidence 578999999999999999999999955 4443
No 477
>PRK06701 short chain dehydrogenase; Provisional
Probab=69.85 E-value=7.8 Score=39.77 Aligned_cols=34 Identities=26% Similarity=0.254 Sum_probs=29.8
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEE
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaI 445 (577)
.+++|++++|.| .|-+|.++++.|.+.|++|+.+
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~ 76 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIV 76 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 468899999998 5889999999999999997644
No 478
>PRK08655 prephenate dehydrogenase; Provisional
Probab=69.74 E-value=20 Score=39.85 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=25.8
Q ss_pred ceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 417 LRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 417 krVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++|.|.| +|.+|..+|+.|.+.|..| .+.|.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V-~v~~r 32 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEV-IVTGR 32 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEE-EEEEC
Confidence 4789997 8999999999999999885 44454
No 479
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=69.73 E-value=7.1 Score=39.15 Aligned_cols=32 Identities=31% Similarity=0.367 Sum_probs=28.1
Q ss_pred CCCCceEEEEec---chHHHHHHHHHHHCCCeEEE
Q 008128 413 ELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVS 444 (577)
Q Consensus 413 ~l~GkrVaIQGf---GNVG~~aA~~L~e~GAkVVa 444 (577)
+++||+++|.|. +-+|..+|+.|.+.|++|+.
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~ 37 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGI 37 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEE
Confidence 478999999996 47999999999999999654
No 480
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=69.55 E-value=15 Score=39.11 Aligned_cols=84 Identities=19% Similarity=0.208 Sum_probs=52.1
Q ss_pred CceEEEEe-cchHHHHHHHHHHHCCC---eEEEEEcC--CCeeeCCCCCCHHhHhHHHHHHhhcCcccccccccCCceEe
Q 008128 416 GLRCVVSG-SGKIAMHVLEKLIAYGA---IPVSVSDA--KGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY 489 (577)
Q Consensus 416 GkrVaIQG-fGNVG~~aA~~L~e~GA---kVVaISDs--~G~Iydp~GLD~e~L~~l~~~k~~~g~l~~y~~~~p~a~~i 489 (577)
+++|+|.| .|.||+.++++|.+.+. ++++++-. .|.-+.-.|. .....
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~--------------------------~i~v~ 54 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGK--------------------------ELKVE 54 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCc--------------------------eeEEe
Confidence 46899999 69999999999999764 44555432 2211110000 01111
Q ss_pred CCC-CccccccceeecCCcccccchhhHhhhhccCceEE
Q 008128 490 DEA-KPWNERCDVAFPCASQNEIDQSDAINLVNSGCRIL 527 (577)
Q Consensus 490 ~~~-eil~~~cDIlIPcA~~n~It~enA~~l~~~~akiV 527 (577)
+.. ..| .+||++|-|+ ....+.+-++++.+.+|++|
T Consensus 55 d~~~~~~-~~vDvVf~A~-g~g~s~~~~~~~~~~G~~VI 91 (334)
T PRK14874 55 DLTTFDF-SGVDIALFSA-GGSVSKKYAPKAAAAGAVVI 91 (334)
T ss_pred eCCHHHH-cCCCEEEECC-ChHHHHHHHHHHHhCCCEEE
Confidence 111 124 3799999775 66688888888888888665
No 481
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.55 E-value=8.1 Score=41.77 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=37.3
Q ss_pred HHHHcCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 406 ILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 406 ~l~~~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
.|++.+.. .|+++.|.|.|-+|.-+.++...+|++|++||-++
T Consensus 173 pLk~~g~~-pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~ 215 (360)
T KOG0023|consen 173 PLKRSGLG-PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSS 215 (360)
T ss_pred hhHHcCCC-CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCc
Confidence 45566777 89999999999999999999999999999998873
No 482
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.45 E-value=7.8 Score=42.25 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=31.4
Q ss_pred CCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 413 ~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
++.+++|.|.|+|.-|..++++|.+.|++ |.++|.+
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~-v~~~D~~ 38 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFFLARGVT-PRVIDTR 38 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCCe-EEEEcCC
Confidence 35688999999999999999999999998 5678863
No 483
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=69.37 E-value=8.3 Score=35.20 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=27.1
Q ss_pred ceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 417 LRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 417 krVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
|+++|.| .+.+|..+++.|.+.|+++|.+...
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r 33 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSR 33 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeee
Confidence 6888998 7999999999999998866666655
No 484
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=69.28 E-value=20 Score=33.89 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=47.1
Q ss_pred CcchHHHHHHHHHHHHH-cCCCCCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 393 EATGYGLVFFAQLILAD-MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 393 eATG~GV~~~~~~~l~~-~g~~l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
+.|-|-.-.+++.+.+. +...++...|.|.|+|.=...+.+.|...|.+|.-|.|.
T Consensus 57 k~tpyAA~~aa~~aa~~a~e~Gi~~v~v~vkgpG~GreaAiraL~~ag~~i~~I~Dv 113 (129)
T COG0100 57 KSTPYAAQLAAEDAAKKAKEHGIKSVEVKVKGPGPGREAAIRALAAAGLKITRIEDV 113 (129)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCccEEEEEEECCCCcHHHHHHHHHHccceEEEEEEc
Confidence 78888777777666643 346688889999999999999999999999999999996
No 485
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=69.22 E-value=8.3 Score=41.74 Aligned_cols=37 Identities=32% Similarity=0.440 Sum_probs=32.4
Q ss_pred cCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 410 MNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 410 ~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
.+...++++|.|.| .|.+|+++++.|.+.|.+|++++
T Consensus 54 ~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~ 91 (390)
T PLN02657 54 RSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVA 91 (390)
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 45677899999999 59999999999999999987765
No 486
>PRK07985 oxidoreductase; Provisional
Probab=69.22 E-value=7.2 Score=40.09 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=28.9
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEE
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVS 444 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVa 444 (577)
+++|++++|.| .|.+|.++|+.|.+.|++|+.
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~ 78 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAI 78 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEE
Confidence 58899999999 599999999999999999764
No 487
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=69.14 E-value=15 Score=38.04 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=30.3
Q ss_pred CCCceEEEEec-chHHHHHHHHHHHCCCeEEEEEcC
Q 008128 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 414 l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaISDs 448 (577)
-.|.+|.|.|. |.||..+++.+..+|++|++++.+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~ 185 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS 185 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46899999996 999999999999999998776543
No 488
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=69.13 E-value=7.9 Score=41.34 Aligned_cols=38 Identities=29% Similarity=0.484 Sum_probs=31.7
Q ss_pred cCCCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 410 MNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 410 ~g~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
....+.++||.|.| .|-||+|++++|...|.+|++ +|-
T Consensus 21 ~~~p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa-~Dn 59 (350)
T KOG1429|consen 21 QVKPSQNLRILITGGAGFIGSHLVDKLMTEGHEVIA-LDN 59 (350)
T ss_pred cccCCCCcEEEEecCcchHHHHHHHHHHhcCCeEEE-Eec
Confidence 35677889999998 689999999999999988765 453
No 489
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=69.13 E-value=7.1 Score=43.01 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=29.5
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
..|++|+|.|.|++|..+|+.|.+.|++ |++...
T Consensus 270 ~~gk~VvVIGgG~~a~d~A~~l~~~G~~-Vtlv~~ 303 (449)
T TIGR01316 270 YAGKSVVVIGGGNTAVDSARTALRLGAE-VHCLYR 303 (449)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcCCE-EEEEee
Confidence 4689999999999999999999999999 555543
No 490
>PRK12831 putative oxidoreductase; Provisional
Probab=69.04 E-value=6.8 Score=43.52 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=30.0
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
..|++|+|.|.||+|.-+|+.|.+.|++ |++...
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~-Vtlv~r 312 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLGAE-VHIVYR 312 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcCCE-EEEEee
Confidence 5789999999999999999999999999 555554
No 491
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=68.96 E-value=6.4 Score=41.53 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=32.4
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcCC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs~ 449 (577)
|+..+|.|.|.|-+|..+|+.|...|.+=++|.|.+
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d 52 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTK 52 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 567899999999999999999999999888888863
No 492
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=68.88 E-value=7.9 Score=42.69 Aligned_cols=35 Identities=34% Similarity=0.502 Sum_probs=30.6
Q ss_pred CCCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEE
Q 008128 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (577)
Q Consensus 412 ~~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaIS 446 (577)
.+++||+|+|.| .|-+|+.+++.|.+.|++|+.++
T Consensus 174 ~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~ 209 (406)
T PRK07424 174 LSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALT 209 (406)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 357899999998 59999999999999999987664
No 493
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=68.85 E-value=7.3 Score=45.94 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=27.4
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++|+|.|.|.+|...|..+...|.. |.+.|.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~ 344 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTP-IVMKDI 344 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCe-EEEEeC
Confidence 5899999999999999999999988 556776
No 494
>PRK07831 short chain dehydrogenase; Provisional
Probab=68.76 E-value=8 Score=38.39 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=28.9
Q ss_pred CCCCceEEEEec-c-hHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSGS-G-KIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQGf-G-NVG~~aA~~L~e~GAkVVaISDs 448 (577)
.+++++++|.|. | .+|..+++.|.+.|++|+ +.|.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~-~~~~ 50 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVV-ISDI 50 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEE-EEeC
Confidence 356899999996 6 699999999999999965 4444
No 495
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=68.69 E-value=14 Score=38.89 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=29.8
Q ss_pred CCCceEEEEec-chHHHHHHHHHHHCCCeEEEEEc
Q 008128 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 414 l~GkrVaIQGf-GNVG~~aA~~L~e~GAkVVaISD 447 (577)
-.|.+|.|.|. |.||..+++.+...|++|++++.
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~ 191 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG 191 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcC
Confidence 46899999998 99999999999999999877654
No 496
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=68.63 E-value=6.6 Score=42.63 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=26.0
Q ss_pred ceEEEEecchHHHHHHHHHHHCCCeEEEE
Q 008128 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (577)
Q Consensus 417 krVaIQGfGNVG~~aA~~L~e~GAkVVaI 445 (577)
++|+|.|+|++|+.+++.|.+.|..|+.|
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vi 29 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVI 29 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 47999999999999999999999987654
No 497
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=68.60 E-value=6.7 Score=44.48 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=29.9
Q ss_pred CCCceEEEEecchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 414 l~GkrVaIQGfGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
..|++|+|+|.|..|..+|..|.+.|++ |.|.|.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~-V~v~e~ 168 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHA-VTIFEA 168 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEec
Confidence 4689999999999999999999999999 555664
No 498
>PRK09291 short chain dehydrogenase; Provisional
Probab=68.52 E-value=8.3 Score=37.86 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=27.6
Q ss_pred CceEEEEe-cchHHHHHHHHHHHCCCeEEEEEc
Q 008128 416 GLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (577)
Q Consensus 416 GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISD 447 (577)
+++++|.| .|.+|+++++.|.+.|++|++++-
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r 34 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQ 34 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 56899998 599999999999999999877553
No 499
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=68.50 E-value=8.9 Score=37.16 Aligned_cols=35 Identities=34% Similarity=0.489 Sum_probs=29.3
Q ss_pred CCCCceEEEEe-cchHHHHHHHHHHHCCCeEEEEEcC
Q 008128 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (577)
Q Consensus 413 ~l~GkrVaIQG-fGNVG~~aA~~L~e~GAkVVaISDs 448 (577)
++++++++|.| .|.+|+.+++.|.+.|+.|+ +.+.
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~-~~~~ 38 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVG-LHGT 38 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEcC
Confidence 57889999999 69999999999999999754 4444
No 500
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=68.47 E-value=20 Score=31.95 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=26.4
Q ss_pred eEEEEe-cchHHHHHHHHHHH-CCCeEEEEEcC
Q 008128 418 RCVVSG-SGKIAMHVLEKLIA-YGAIPVSVSDA 448 (577)
Q Consensus 418 rVaIQG-fGNVG~~aA~~L~e-~GAkVVaISDs 448 (577)
+++|.| .|.+|..+++.|.+ .+..+++++++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~ 33 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAAS 33 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEec
Confidence 588999 49999999999988 48899999665
Done!