BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008130
(576 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NGQ|A Chain A, Crystal Structure Of The Human Cnot6l Nuclease Domain
Length = 398
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 109/370 (29%), Positives = 160/370 (43%), Gaps = 65/370 (17%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
+I + +F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EI+ ADI+ LQEV
Sbjct: 25 QILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEV 84
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKT------------------------------NEVE 336
+ + + F P L + GY + K+ + VE
Sbjct: 85 ETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVE 144
Query: 337 FNKAAQSLTDAILPSAQKKNALNR-LVKDNVALIVVLEAKFSNQGADTP----GKRQLLC 391
FN+ A + +D + LNR + KDN+ + VVLE GA +QLL
Sbjct: 145 FNQVAMANSDG------SEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLI 198
Query: 392 VANTHVNVHQELKDVKLWQVHTLLKGLEKIAASA------------DIPMLVCGDFNSVP 439
VAN H++ E DVKL Q + ++ I A IP+++C D NS+P
Sbjct: 199 VANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLP 258
Query: 440 GSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQR 499
S L+ G V H D LR + L + SS RI G ++
Sbjct: 259 DSGVVEYLSNGGVADNHKDFKE-----LRYNECLMNFSCNGKNGSSEGRITHGFQLKSAY 313
Query: 500 RRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKD--TALPSPEW 557
N +T+ T DF G +DYIFY+ ++ T P P
Sbjct: 314 E-----NNLMPYTNYTFDFKGVIDYIFYSKTHMNVEGVLGPLDPQWLVENNITGCPHPHI 368
Query: 558 SSDHIALLAE 567
SDH +LL +
Sbjct: 369 PSDHFSLLTQ 378
>pdb|3NGN|A Chain A, Crystal Structure Of The Human Cnot6l Nuclease Domain In
Complex With Amp
pdb|3NGO|A Chain A, Crystal Structure Of The Human Cnot6l Nuclease Domain In
Complex With Poly(A) Dna
Length = 398
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 109/370 (29%), Positives = 160/370 (43%), Gaps = 65/370 (17%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
+I + +F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EI+ ADI+ LQEV
Sbjct: 25 QILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEV 84
Query: 307 QNDHFEEFFAPELDKHGYQALYKRKT------------------------------NEVE 336
+ + + F P L + GY + K+ + VE
Sbjct: 85 ETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVE 144
Query: 337 FNKAAQSLTDAILPSAQKKNALNR-LVKDNVALIVVLEAKFSNQGADT----PGKRQLLC 391
FN+ A + +D + LNR + KDN+ + VVLE GA +QLL
Sbjct: 145 FNQVAMANSDG------SEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLI 198
Query: 392 VANTHVNVHQELKDVKLWQVHTLLKGLEKIAASA------------DIPMLVCGDFNSVP 439
VAN H++ E DVKL Q + ++ I A IP+++C D NS+P
Sbjct: 199 VANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLP 258
Query: 440 GSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQR 499
S L+ G V H D LR + L + SS RI G ++
Sbjct: 259 DSGVVEYLSNGGVADNHKDFKE-----LRYNECLMNFSCNGKNGSSEGRITHGFQLKSAY 313
Query: 500 RRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKD--TALPSPEW 557
N +T+ T DF G +DYIFY+ ++ T P P
Sbjct: 314 E-----NNLMPYTNYTFDFKGVIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPHPHI 368
Query: 558 SSDHIALLAE 567
SDH +LL +
Sbjct: 369 PSDHFSLLTQ 378
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 157/354 (44%), Gaps = 68/354 (19%)
Query: 253 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFE 312
TF+VLSYN L YAT + Y Y PSWALSW YRR L +I+ Y +D++CLQEV++ FE
Sbjct: 394 TFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFE 453
Query: 313 EFFAPELDKHGYQALYKRK----------TNEVE-------------FNKAAQSLTDAIL 349
E++ P LDKHGY ++ K + +V+ K A + A +
Sbjct: 454 EYWVPLLDKHGYTGIFHAKARAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDFSGAWM 513
Query: 350 PSAQ---KKNALNR-LVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKD 405
+ ++ LNR + KDNVAL + L+ P + V TH++ + D
Sbjct: 514 KHKKFQRTEDYLNRAMNKDNVALFLKLQH--------IPSGDTIWAVT-THLHWDPKFND 564
Query: 406 VKLWQVHTLLKGLEKIAAS----------ADIPMLVCGDFNSVPGSAPHALLAMGKVEPV 455
VK +QV LL LE + P+L+CGDFNS SA + L+ G+V+ +
Sbjct: 565 VKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINSAVYELINTGRVQ-I 623
Query: 456 HPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCT 515
H + + +H L L S+Y+ + FT+ T
Sbjct: 624 HQEGNGRDFGYMS-EKNFSHNLALKSSYNCIGELP--------------------FTNFT 662
Query: 516 RDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTALPSPEWSSDHIALLAEFR 569
F +DYI+++ K P+ ++ SDHI LLA F
Sbjct: 663 PSFTDVIDYIWFSTHALRVRGLLGEVDPEYVSKFIGFPNDKFPSDHIPLLARFE 716
>pdb|3G6S|A Chain A, Crystal Structure Of The
EndonucleaseEXONUCLEASEPHOSPHATASE (BVU_0621) FROM
Bacteroides Vulgatus. Northeast Structural Genomics
Consortium Target Bvr56d
Length = 267
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 74/184 (40%), Gaps = 29/184 (15%)
Query: 281 SWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFA--PELDKHG-----------YQAL 327
+W YR+ + + I + DIV QEV ++ F++ A PE D G Y L
Sbjct: 22 NWQYRKDRVCQFIKDHELDIVGXQEVLHNQFQDLRAGLPEYDGIGVGRDDGKTAGEYAPL 81
Query: 328 YKRKTNEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKR 387
+ RK + L A+ +++ D V + + AKF ++ GK
Sbjct: 82 FYRKDK-------YEVLDSNTFWLAENPDSVGXXGWDAVCVRIATWAKFKDKAT---GK- 130
Query: 388 QLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALL 447
+ NTH + E + + +++ +++I P +V GDFN S + +
Sbjct: 131 -IFXAVNTHFDHVGE--EARRQSALLIIRKIKEIVGER--PAVVTGDFNVTDASDAYETI 185
Query: 448 AMGK 451
+
Sbjct: 186 TTNE 189
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 18/169 (10%)
Query: 224 SPRRLFPVNG--SDMNMMGHIDSDGRISSTG-TFSVLSYNILSD-------VYATSESYS 273
+PR ++ S++N+ G I D +S G FS +SD V+ + +
Sbjct: 248 TPRSIYLCRAGESELNLKGRIGGDPGLSPRGREFSKHLAQFISDQNIKDLKVFTSQMKRT 307
Query: 274 YCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333
+ ALS Y + +L EI + + +E+Q+ + EF + DK+ Y R
Sbjct: 308 IQTAEALSVPYEQFKVLNEIDAGVCEEMTYEEIQDHYPLEFALRDQDKYRY-----RYPK 362
Query: 334 EVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGAD 382
+ Q L I+ +++N LV + A++ L A F ++ A+
Sbjct: 363 GESYEDLVQRLEPVIMELERQENV---LVICHQAVMRCLLAYFLDKAAE 408
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
6-Pf-2k Active Site
Length = 468
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 16/157 (10%)
Query: 234 SDMNMMGHIDSDGRISSTG-TFSVLSYNILSD-------VYATSESYSYCPSWALSWAYR 285
S++N+ G I D +S G FS +SD V+ + + + ALS Y
Sbjct: 259 SELNLKGRIGGDPGLSPRGREFSKHLAQFISDQNIKDLKVFTSQMKRTIQTAEALSVPYE 318
Query: 286 RQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVEFNKAAQSLT 345
+ +L EI + + +E+Q+ + EF + DK+ Y R + Q L
Sbjct: 319 QFKVLNEIDAGVCEEMTYEEIQDHYPLEFALRDQDKYRY-----RYPKGESYEDLVQRLE 373
Query: 346 DAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGAD 382
I+ +++N LV + A++ L A F ++ A+
Sbjct: 374 PVIMELERQENV---LVICHQAVMRCLLAYFLDKAAE 407
>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Bifunctional Enzyme Complexed With Atp-G-S And Phosphate
Length = 469
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 16/157 (10%)
Query: 234 SDMNMMGHIDSDGRISSTG-TFSVLSYNILSD-------VYATSESYSYCPSWALSWAYR 285
S++N+ G I D +S G FS +SD V+ + + + ALS Y
Sbjct: 260 SELNLKGRIGGDPGLSPRGREFSKHLAQFISDQNIKDLKVFTSQMKRTIQTAEALSVPYE 319
Query: 286 RQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVEFNKAAQSLT 345
+ +L EI + + +E+Q+ + EF + DK+ Y R + Q L
Sbjct: 320 QFKVLNEIDAGVCEEMTYEEIQDHYPLEFALRDQDKYRY-----RYPKGESYEDLVQRLE 374
Query: 346 DAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGAD 382
I+ +++N LV + A++ L A F ++ A+
Sbjct: 375 PVIMELERQENV---LVICHQAVMRCLLAYFLDKAAE 408
>pdb|1C7Z|A Chain A, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C7Z|B Chain B, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C80|A Chain A, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C80|B Chain B, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C81|A Chain A, Michaelis Complex Of Fructose-2,6-Bisphosphatase
Length = 191
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 24/161 (14%)
Query: 234 SDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSW------------ALS 281
S++N+ G I D +S+ G Y + S+ S W AL
Sbjct: 12 SELNLRGRIGGDSGLSARGK----QYAYALANFIRSQGISSLKVWTSHMKRTIQTAEALG 67
Query: 282 WAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVEFNKAA 341
Y + L EI + + +E+Q + EEF + DK+ Y R +
Sbjct: 68 VPYEQWKALNEIDAGVCEEMTYEEIQEHYPEEFALRDQDKYRY-----RYPKGESYEDLV 122
Query: 342 QSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGAD 382
Q L I+ +++N LV + A++ L A F ++ +D
Sbjct: 123 QRLEPVIMELERQENV---LVICHQAVMRCLLAYFLDKSSD 160
>pdb|1TIP|A Chain A, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-kinase/fructose-2,6-bisphosphatase
pdb|1TIP|B Chain B, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-kinase/fructose-2,6-bisphosphatase
Length = 191
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 24/161 (14%)
Query: 234 SDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSW------------ALS 281
S++N+ G I D +S+ G Y + S+ S W AL
Sbjct: 12 SELNLRGRIGGDSGLSARGK----QYAYALANFIRSQGISSLKVWTSHMKRTIQTAEALG 67
Query: 282 WAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVEFNKAA 341
Y + L EI + + +E+Q + EEF + DK+ Y R +
Sbjct: 68 VPYEQWKALNEIDAGVCEEMTYEEIQEHYPEEFALRDQDKYRY-----RYPKGESYEDLV 122
Query: 342 QSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGAD 382
Q L I+ +++N LV + A++ L A F ++ +D
Sbjct: 123 QRLEPVIMELERQENV---LVICHQAVMRCLLAYFLDKSSD 160
>pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|2DWO|A Chain A, Pfkfb3 In Complex With Adp And Pep
pdb|2DWP|A Chain A, A Pseudo Substrate Complex Of 6-Phosphofructo-2-Kinase Of
Pfkfb
pdb|2I1V|B Chain B, Crystal Structure Of Pfkfb3 In Complex With Adp And
Fructose-2,6-Bisphosphate
pdb|3QPU|A Chain A, Pfkfb3 In Complex With Ppi
pdb|3QPV|A Chain A, Pfkfb3 Trapped In A Phospho-Enzyme Intermediate State
pdb|3QPW|A Chain A, Pfkfb3 In Complex With Aluminum Tetrafluoride
Length = 520
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 234 SDMNMMGHIDSDGRISSTGT--FSVLSYNI----LSD--VYATSESYSYCPSWALSWAYR 285
++ N+ G I D +SS G S LS + L D V+ + + + AL Y
Sbjct: 257 NEHNLQGRIGGDSGLSSRGKKFASALSKFVEEQNLKDLRVWTSQLKSTIQTAEALRLPYE 316
Query: 286 RQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVEFNKAAQSLT 345
+ L EI + + +E+++ + EE+ E DK+ Y+ T E + Q L
Sbjct: 317 QWKALNEIDAGVCEELTYEEIRDTYPEEYALREQDKY----YYRYPTGE-SYQDLVQRLE 371
Query: 346 DAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGAD 382
I+ +++N LV + A++ L A F ++ A+
Sbjct: 372 PVIMELERQENV---LVICHQAVLRCLLAYFLDKSAE 405
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,362,949
Number of Sequences: 62578
Number of extensions: 641930
Number of successful extensions: 1440
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1425
Number of HSP's gapped (non-prelim): 13
length of query: 576
length of database: 14,973,337
effective HSP length: 104
effective length of query: 472
effective length of database: 8,465,225
effective search space: 3995586200
effective search space used: 3995586200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)