Query 008130
Match_columns 576
No_of_seqs 423 out of 2119
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 19:51:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03144 Carbon catabolite rep 100.0 7E-138 2E-142 1133.1 53.4 574 1-576 1-606 (606)
2 COG5239 CCR4 mRNA deadenylase, 100.0 5.9E-46 1.3E-50 374.3 14.3 289 253-573 30-368 (378)
3 KOG2338 Transcriptional effect 100.0 5.5E-41 1.2E-45 351.4 22.0 309 252-570 115-493 (495)
4 KOG0620 Glucose-repressible al 100.0 8.5E-42 1.8E-46 356.8 13.6 309 224-575 2-356 (361)
5 TIGR03395 sphingomy sphingomye 99.9 6.1E-23 1.3E-27 210.6 21.8 173 254-448 1-199 (283)
6 PRK11756 exonuclease III; Prov 99.9 4.2E-23 9.2E-28 210.4 19.0 253 254-570 1-268 (268)
7 COG3568 ElsH Metal-dependent h 99.9 1.2E-21 2.5E-26 194.6 16.4 234 253-571 9-258 (259)
8 COG0708 XthA Exonuclease III [ 99.9 1.1E-20 2.3E-25 188.3 16.9 246 254-570 1-261 (261)
9 PRK05421 hypothetical protein; 99.8 8.6E-20 1.9E-24 185.7 19.3 153 250-440 40-196 (263)
10 TIGR00195 exoDNase_III exodeox 99.8 5E-19 1.1E-23 179.0 17.4 241 254-568 1-254 (254)
11 PTZ00297 pantothenate kinase; 99.8 8.3E-18 1.8E-22 202.7 23.1 180 250-449 7-226 (1452)
12 KOG3873 Sphingomyelinase famil 99.8 3.4E-18 7.4E-23 172.9 15.9 270 251-575 6-297 (422)
13 TIGR00633 xth exodeoxyribonucl 99.8 1.1E-17 2.4E-22 168.5 17.7 150 254-440 1-155 (255)
14 PRK13911 exodeoxyribonuclease 99.8 2.5E-17 5.4E-22 166.1 17.9 236 254-568 1-249 (250)
15 KOG2756 Predicted Mg2+-depende 99.7 7E-16 1.5E-20 150.6 15.8 157 250-438 96-255 (349)
16 PLN03158 methionine aminopepti 99.7 2.1E-17 4.6E-22 176.0 5.5 71 63-134 10-95 (396)
17 PF03372 Exo_endo_phos: Endonu 99.6 4.3E-15 9.2E-20 145.7 14.0 144 285-443 17-173 (249)
18 smart00476 DNaseIc deoxyribonu 99.6 4.6E-14 1E-18 143.6 19.6 159 251-440 15-190 (276)
19 COG3021 Uncharacterized protei 99.5 5.2E-13 1.1E-17 135.3 12.8 158 250-448 85-244 (309)
20 PRK15251 cytolethal distending 99.4 4.2E-12 9E-17 127.6 16.4 54 390-447 152-205 (271)
21 KOG2738 Putative methionine am 99.3 3.1E-13 6.7E-18 133.8 2.3 68 63-135 7-75 (369)
22 COG2374 Predicted extracellula 99.1 7.8E-10 1.7E-14 122.2 15.9 267 250-572 460-790 (798)
23 smart00128 IPPc Inositol polyp 99.0 4.6E-09 1E-13 109.5 15.1 77 363-450 124-209 (310)
24 KOG0566 Inositol-1,4,5-triphos 98.2 2.6E-05 5.6E-10 88.5 14.2 66 387-452 672-743 (1080)
25 PF14529 Exo_endo_phos_2: Endo 97.7 4.9E-05 1.1E-09 67.0 5.7 43 510-565 77-119 (119)
26 COG5411 Phosphatidylinositol 5 97.1 0.0019 4.2E-08 68.6 9.5 51 388-438 165-218 (460)
27 PF01753 zf-MYND: MYND finger; 96.8 0.001 2.3E-08 46.7 2.9 34 67-107 2-35 (37)
28 PLN03191 Type I inositol-1,4,5 96.5 0.0071 1.5E-07 67.2 8.0 68 362-440 405-483 (621)
29 COG5239 CCR4 mRNA deadenylase, 96.2 0.0044 9.5E-08 64.4 4.1 83 363-453 120-202 (378)
30 PTZ00312 inositol-1,4,5-tripho 94.3 0.16 3.4E-06 51.8 7.7 62 386-448 78-151 (356)
31 KOG1294 Apurinic/apyrimidinic 94.0 0.53 1.2E-05 49.6 11.3 63 495-569 265-334 (335)
32 KOG1976 Inositol polyphosphate 91.7 0.23 5E-06 50.7 4.6 61 387-448 168-240 (391)
33 KOG1710 MYND Zn-finger and ank 90.2 0.14 3E-06 52.0 1.5 40 63-110 320-360 (396)
34 PF09889 DUF2116: Uncharacteri 82.3 1.2 2.7E-05 34.6 2.6 33 76-110 5-37 (59)
35 PF04438 zf-HIT: HIT zinc fing 71.5 3.4 7.4E-05 27.6 2.0 28 63-99 3-30 (30)
36 PRK00418 DNA gyrase inhibitor; 60.0 5.5 0.00012 31.3 1.5 28 73-100 5-35 (62)
37 PRK01343 zinc-binding protein; 57.4 5.7 0.00012 30.7 1.2 26 74-100 9-34 (57)
38 KOG3612 PHD Zn-finger protein 56.1 3.4 7.3E-05 45.6 -0.3 39 65-113 530-568 (588)
39 PF03884 DUF329: Domain of unk 54.8 5.1 0.00011 31.0 0.5 26 74-99 2-30 (57)
40 COG3350 Uncharacterized conser 45.7 12 0.00026 28.4 1.2 11 90-100 28-38 (53)
41 PF02069 Metallothio_Pro: Prok 45.0 12 0.00025 28.5 1.1 19 82-100 20-38 (52)
42 COG3024 Uncharacterized protei 35.5 19 0.00042 28.4 1.1 26 74-99 7-35 (65)
43 KOG0808 Carbon-nitrogen hydrol 31.2 41 0.0009 34.0 2.8 29 283-311 99-127 (387)
44 PTZ00235 DNA polymerase epsilo 27.7 1.2E+02 0.0025 31.6 5.5 48 386-439 27-77 (291)
45 KOG0565 Inositol polyphosphate 27.0 97 0.0021 28.2 4.4 55 387-441 58-123 (145)
46 COG4306 Uncharacterized protei 26.3 16 0.00035 32.7 -0.8 19 63-82 29-47 (160)
47 KOG2857 Predicted MYND Zn-fing 25.9 33 0.00071 31.5 1.0 29 63-100 6-35 (157)
48 COG4068 Uncharacterized protei 25.6 29 0.00062 26.9 0.5 30 75-106 9-38 (64)
49 PF04181 RPAP2_Rtr1: Rtr1/RPAP 24.1 39 0.00085 27.7 1.1 12 90-101 59-70 (79)
50 PF04945 YHS: YHS domain; Int 23.5 38 0.00083 24.7 0.8 11 90-100 25-35 (47)
51 PF13824 zf-Mss51: Zinc-finger 22.6 1.1E+02 0.0024 23.5 3.2 30 74-110 14-43 (55)
52 PLN03191 Type I inositol-1,4,5 21.3 88 0.0019 35.7 3.4 17 556-572 577-593 (621)
53 PF05502 Dynactin_p62: Dynacti 20.3 47 0.001 37.1 1.1 24 65-95 8-31 (483)
No 1
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=100.00 E-value=7.2e-138 Score=1133.08 Aligned_cols=574 Identities=83% Similarity=1.338 Sum_probs=523.9
Q ss_pred CccEEEEecCCCCceecceeeeEEEEecCCCCCCCCCCCCCCCCCCceeEEEEeeecCCcccccccCCCCCCceeecchh
Q 008130 1 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGC 80 (576)
Q Consensus 1 ~~~~~~~~~~~~~p~~g~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~r~~~~~~~~~c~~~~~~~~~l~c~~c 80 (576)
||+|||||||+|||||||||+|||++||+||+++++||||++|++|+||||||||+|+++++++|++|++++|+||||+|
T Consensus 1 ~~~~~~~~l~~~~pi~g~~~~p~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~w~r~~~~~~~~~c~~h~~~~a~lqCp~C 80 (606)
T PLN03144 1 MLSVVRVHLPSDIPIVGCELTPYVLLRRPDGTLTTDDVPESAPLDGYFLRYRWYRIQSDRKVAVCSVHPSEPATLQCVGC 80 (606)
T ss_pred CeeEEEEEcCCCCCeeeeeeEEEEEEEcCCCCcCcccCcccCCCCcceEEEEEEecCCCccceeEeecCCCcccccCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCceeecChHHhHHhHHHHHHHHHhhhcccccCCCchhhhccCCCCCCCccccccCCCCCCCCCccCCCCcccC
Q 008130 81 VKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYP 160 (576)
Q Consensus 81 ~~~~~~~~~~~fc~q~Cfk~~w~~hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (576)
+|+|+++..||||||+|||++|++||.+|+.|.++.+++++|++++|++++++|+|..+.+++|+.++.+++|||+++||
T Consensus 81 ~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (606)
T PLN03144 81 VKAKLPVSKSYHCSPKCFSDAWRHHRVLHERAASAVRENGNEEDELFGRFNSSGSGVLSTSDSGSASSASLTNGSVPLYP 160 (606)
T ss_pred hhcCCCcCcceeeCHHHHHHHHHHHHHHHHHhhhhhcccCccccccccccCCCccccccccccccccccccccCcccccc
Confidence 99999878899999999999999999999999998999999999999999999999999889888888899999999999
Q ss_pred CccccCC---CCceEEeccceeecCCccCCCceEEEEEEEeeCCcCCCCCCcceeeeccccCCCCCCCCceeeeCCCCcc
Q 008130 161 AAVTRSG---GETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMN 237 (576)
Q Consensus 161 ~~~~~~~---~~~w~~v~~~~~y~P~~~diG~~l~l~~~~~~~~~~~~~g~~~~~~~~~v~p~p~p~~R~~~~~~~~~~~ 237 (576)
.+..+.. +++|++||++++|||+++|||+.|||||+|+++.++.+.|.+.++++.+|+|+|.|++|+|+++.. .+
T Consensus 161 ~~~~~~~~~~~~~w~~vg~~~~y~p~~~d~g~~lk~~~~~~~~~~~~~~~~~~~~~t~~v~~~p~p~~R~~~~~~~--~~ 238 (606)
T PLN03144 161 SGIEQKTQVGGETWIEVGRSKTYTPTADDVGHVLKFECVVVDAETGLPVGHPQSILTSRVIPAPSPTPRRLIQVNG--LD 238 (606)
T ss_pred cccccccCCCCCceEEeCCCccccCChhhCCceEEEEEEEcccccCCCCccceeecccceecCCCCCCcceEEecc--cc
Confidence 9977776 899999999999999999999999999999999877788888999999999999999999999876 45
Q ss_pred ccccccCCCCCCCCCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHH
Q 008130 238 MMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAP 317 (576)
Q Consensus 238 ~~~~~~~~~~~~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~ 317 (576)
.++|++++++.....+|||||||||++.|+++++|+|||+++|+|+||+++|+++|..++|||||||||+.++|.++|.+
T Consensus 239 ~~~~~~~~~~~~~~~~frVmSYNILAd~ya~~dly~ycp~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~~~~~~d~~~p 318 (606)
T PLN03144 239 GMGHLDLDGRTSSAGTFTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQNLLREIVGYRADILCLQEVQSDHFEEFFAP 318 (606)
T ss_pred cccccccccccCCCCCEEEEEeeeccccccCcccccCCCccccCHHHHHHHHHHHHHhcCCCEEEEeecCHHHHHHHHHh
Confidence 56788888887889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCeEEEeccCC-------------eeeeeccccccccc---------------ccCcccccccccccccCcEEEE
Q 008130 318 ELDKHGYQALYKRKTN-------------EVEFNKAAQSLTDA---------------ILPSAQKKNALNRLVKDNVALI 369 (576)
Q Consensus 318 ~L~~~GY~~~~~~k~~-------------~i~f~~~~ls~~~~---------------~~~~~~~~~~~~r~~~d~val~ 369 (576)
.|.++||.++|..+++ .++|++..|++.+. ..+..++..+++|++++|+|++
T Consensus 319 ~L~~~GY~Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s~~~~~~l~Rl~kdNVAli 398 (606)
T PLN03144 319 ELDKHGYQALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKAALNRLLKDNVALI 398 (606)
T ss_pred hhhhcCceEEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCccccccccchhhhhhhccCcEEEE
Confidence 9999999999987753 16777777665432 1122234577889889999999
Q ss_pred EEEeeeecCCCCCCCCCCceEEEEeeecccCCCchhhHHHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChhhHhhhc
Q 008130 370 VVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAM 449 (576)
Q Consensus 370 ~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vRl~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~~~lL~~ 449 (576)
++|+.+.+.......+.++.|+|+||||+|+|.+.++|+.|++.|++.|+++....++|+|||||||+.|+|++|++|++
T Consensus 399 v~Le~k~~~~~~~~~~~~~~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l~~~~~~~~~PvIlcGDFNS~P~S~vy~lLt~ 478 (606)
T PLN03144 399 VVLEAKFGNQGADNGGKRQLLCVANTHIHANQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHCLLAT 478 (606)
T ss_pred EEEEEecccccccCCCCccEEEEEEeeeccCCccchhHHHHHHHHHHHHHHHhhcCCCceEEeccCCCCCCChhhhhhhc
Confidence 99998753221112234568999999999999999999999999999999998767899999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcCCCcccccCCCcchhhhhhhh-hccCCccccccccCCCCCCCCccccccCccCcceeEEEee
Q 008130 450 GKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFAR-IGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYT 528 (576)
Q Consensus 450 g~v~~~h~d~~~~~~~~~~~~~~l~h~~~L~Say~~~~~-~~~g~g~~~~~~~~~~~~~~p~fTn~t~~f~~~IDYIf~s 528 (576)
|.++.+|+||..++++.+.+..++.|+|+|.|||..+.+ .|.+.+.++++.+|++.+++|.||||+++|.++||||||+
T Consensus 479 G~v~~~h~d~~~~~~~~~~~~~~l~H~~~L~SAY~~~~~~~g~~~~~~~~~~r~~~~~geP~fTNyt~~F~gtlDYIfys 558 (606)
T PLN03144 479 GKVDPLHPDLAVDPLGILRPASKLTHQLPLVSAYSSFARMPGSGSGLEQQRRRMDPATNEPLFTNCTRDFIGTLDYIFYT 558 (606)
T ss_pred CCcCCCchhhccCccccccccccccCCCcccchhhhhccccccccchhhhhhccccccCCCCceeecCCcceeEEEEEEc
Confidence 999999999999998888766889999999999988743 2334566888899999899999999999999999999999
Q ss_pred CCCcceeeccccCChhhhccCCCCCCCCCCCCcccEEEEEEEecCCCC
Q 008130 529 ADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKPRARR 576 (576)
Q Consensus 529 ~~~l~v~~~l~~~~~~~~~~~~~lP~~~~pSDH~pl~adf~~k~~~~~ 576 (576)
++.|.+.+++++++++++.+..||||.+|||||+||+|+|+|++|.||
T Consensus 559 ~~~L~v~~vL~lp~e~~l~~~~gLPn~~~PSDHI~L~AeF~~~~~~~~ 606 (606)
T PLN03144 559 ADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCKPRTRR 606 (606)
T ss_pred CCCceEEeecCCCCHHHhcccCCCCCCCCCCccccEeEEEEeccCCCC
Confidence 988999999999999999999999999999999999999999999886
No 2
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=100.00 E-value=5.9e-46 Score=374.32 Aligned_cols=289 Identities=36% Similarity=0.587 Sum_probs=235.0
Q ss_pred cEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEEeccC
Q 008130 253 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKT 332 (576)
Q Consensus 253 ~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k~ 332 (576)
+|+|||||+|++.|+++.+|+|. +||++|.||++.|++||..|+|||||||||+...|++||++.|..+||.++|.++.
T Consensus 30 ~ftimTYN~Laq~y~~r~~y~~s-~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~~~~fw~~~l~~~gY~~if~~k~ 108 (378)
T COG5239 30 DFTIMTYNVLAQTYATRKMYPYS-GWALKWSYRSRLLLQELLYYNADILCLQEVDAEDFEDFWKDQLGKLGYDGIFIPKE 108 (378)
T ss_pred eeEEEehhhhhhhhccccccCCc-hhhhhhHHHHHHHHHHHhccCCceeeeehhhhhHHHHHHHHHhcccccceEEecCC
Confidence 79999999999999999999999 99999999999999999999999999999999999999999999999999999887
Q ss_pred Ce----------------eeeecccc-ccccccc--------C------cccccccccccc-cCcEE---EEEEEeeeec
Q 008130 333 NE----------------VEFNKAAQ-SLTDAIL--------P------SAQKKNALNRLV-KDNVA---LIVVLEAKFS 377 (576)
Q Consensus 333 ~~----------------i~f~~~~l-s~~~~~~--------~------~~~~~~~~~r~~-~d~va---l~~~Le~~~~ 377 (576)
+. |+|....- ++...+. + ..+....++|++ +++++ +++.+..+
T Consensus 109 ~k~~~m~~~d~t~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~~~~er~r~t~~~lnri~e~~~~~w~~l~~~l~n~-- 186 (378)
T COG5239 109 RKVKWMIDYDTTKVDGCAIFLKRFIDSSKLGLILAVTHLFWHPYGYYERFRQTYILLNRIGEKDNIAWVCLFVGLFNK-- 186 (378)
T ss_pred CcccccccccccccceEEEEEEeccccchhhhhhhhhHhhcccceeehhhhHHHHHHHHHhhhhhcchhheeeeeccC--
Confidence 62 33333100 1100000 0 011224566666 67787 56656553
Q ss_pred CCCCCCCCCCceEEEEeeecccCCCchhhHHHHHHHHHHHHHHHhhcC--------------CCCEEEEecCCCCCCChh
Q 008130 378 NQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASA--------------DIPMLVCGDFNSVPGSAP 443 (576)
Q Consensus 378 ~~~~~~~~~g~~l~V~NTHL~~~p~~~~vRl~Q~~~L~~~L~~~~~~~--------------~~pvIl~GDFNs~p~S~~ 443 (576)
.++..++|+|||++|+|.+.++++.|..++++++++...+. ..++++||||||...|.+
T Consensus 187 -------e~gd~~~va~Th~~w~~~~~dvk~iq~s~l~~~~k~~~~e~~~~d~~~~d~k~~~~~~~l~~gd~ns~~~s~v 259 (378)
T COG5239 187 -------EPGDTPYVANTHLPWDPKYRDVKLIQCSLLYRELKKVLKEELNDDKEEGDIKSYPEVDILITGDFNSLRASLV 259 (378)
T ss_pred -------CCCCceeEEeccccccCCCCchheehhhHHHHHHHHHhhhcCCcchhccccccCcccccccCCCccceeccee
Confidence 25778999999999999999999999999999999876432 237899999999999999
Q ss_pred hHhhhcCCCCCCCCCCCCCCCCCcCCCcccccCCCcchhhhhhhhhccCCccccccccCCCCCCCCccccccCccCccee
Q 008130 444 HALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLD 523 (576)
Q Consensus 444 ~~lL~~g~v~~~h~d~~~~~~~~~~~~~~l~h~~~L~Say~~~~~~~~g~g~~~~~~~~~~~~~~p~fTn~t~~f~~~ID 523 (576)
|.+|.++.+. .|.+...+.++.+....+..|++.+.|.+ ..+++.||||+++|.|.||
T Consensus 260 y~~l~~~~~q-~H~~~~~~~~~lysvg~~~~h~~n~~~~~---------------------~~~~~~fTN~t~~~kG~iD 317 (378)
T COG5239 260 YKFLVTSQIQ-LHESLNGRDFSLYSVGYKFVHPENLKSDN---------------------SKGELGFTNWTPGFKGVID 317 (378)
T ss_pred hhhhhhHHHH-hhhcccccchhhhcccccccChhhcccCC---------------------CcCCcccccccccccceeE
Confidence 9999885543 67777666666665556677777666522 2579999999999999999
Q ss_pred EEEeeCC-CcceeeccccCChhhhccCCCCCCCCCCCCcccEEEEEEEecC
Q 008130 524 YIFYTAD-SLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKPR 573 (576)
Q Consensus 524 YIf~s~~-~l~v~~~l~~~~~~~~~~~~~lP~~~~pSDH~pl~adf~~k~~ 573 (576)
||||... .+++...+..+++++..+..|+|+..+||||+|++++|.++..
T Consensus 318 YIfy~~~~~~~~~~~l~~ve~e~~~k~~G~pn~~~pSdhipl~~ef~~~~~ 368 (378)
T COG5239 318 YIFYHGGLLTRQTGLLGVVEGEYASKVIGLPNMPFPSDHIPLLAEFASDHK 368 (378)
T ss_pred EEEEecCcceeeeccccccccchhhhhcccCCCCCccccccchhccccccc
Confidence 9999987 6788889999999888899999999999999999999998653
No 3
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=100.00 E-value=5.5e-41 Score=351.42 Aligned_cols=309 Identities=33% Similarity=0.519 Sum_probs=229.2
Q ss_pred CcEEEEEeccCCCcC---CCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEE
Q 008130 252 GTFSVLSYNILSDVY---ATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY 328 (576)
Q Consensus 252 ~~~rVmSyNIl~~~y---a~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~ 328 (576)
-.|+||||||||+.+ ..+.+|+ |+..+|+|.+|.+.|+.||..++|||||||||+.++|.+++++.+..+||.++|
T Consensus 115 f~ftvmSYNILAQ~l~~~~~r~~~~-~s~~~L~W~~R~~~Ll~EL~~~dpDIlCLQEVq~d~~~~~~~~~~~~lGy~~~~ 193 (495)
T KOG2338|consen 115 FDFTVMSYNILAQDLLRDIRRLYFP-ESGPALKWLRRSQNLLNELKHYDPDVLCLQEVQEDHYPEFWQPLLGKLGYTGFF 193 (495)
T ss_pred cceEEEEehHhHHHHHHHhHHhhcc-CChhhcchhHHhHHHHHHHhhcCCCeeeehhhhhhhhHHHHHHHHhhcCceEEE
Confidence 489999999999988 4456777 999999999999999999999999999999999999999999999999999998
Q ss_pred eccCCe------eeeecccccccccccCcccccccccccc-cCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCC
Q 008130 329 KRKTNE------VEFNKAAQSLTDAILPSAQKKNALNRLV-KDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQ 401 (576)
Q Consensus 329 ~~k~~~------i~f~~~~ls~~~~~~~~~~~~~~~~r~~-~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p 401 (576)
...++. +.|....|.+........ . ...+.++ .+||++++.|+.++... ..+.|+|+||||.|+|
T Consensus 194 ~r~t~~KthG~ai~w~~~~F~lv~~~~l~y-~-~~~~~l~n~~NV~lvv~l~f~~~~~------~sq~ilVanTHLl~np 265 (495)
T KOG2338|consen 194 KRRTGTKTHGVAILWHSAKFKLVNHSELNY-F-DSGSALANRDNVGLVVSLEFRLVDE------SSQGILVANTHLLFNP 265 (495)
T ss_pred EeccCCCCceEEEEEecccceecccchhhc-c-cccchhhcccceeEEEEEEecccCc------ccCceEEEeeeeeecC
Confidence 876532 677777776654321111 1 2223333 68999999999865321 3457999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHhhcC--CCCEEEEecCCCCCCChhhHhhhcCCCCCCCCC-C--------CCC-----CCC
Q 008130 402 ELKDVKLWQVHTLLKGLEKIAASA--DIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPD-L--------AVD-----PLT 465 (576)
Q Consensus 402 ~~~~vRl~Q~~~L~~~L~~~~~~~--~~pvIl~GDFNs~p~S~~~~lL~~g~v~~~h~d-~--------~~~-----~~~ 465 (576)
...++|++|...|++.++++++.. ..|+|+|||||+.|++++|.+|+.+.+...-.. + ... ..|
T Consensus 266 ~~~~vrL~Q~~iiL~~~~~~~~~~~~~~pi~l~GDfNt~p~~~~y~fl~~~~l~~~~~~~~~~e~s~~~~~~~~~~ge~g 345 (495)
T KOG2338|consen 266 SRSDVRLAQVYIILAELEKMSKSSKSHWPIFLCGDFNTEPDSPPYLFLTSGPLIYDGRAAHTIEDSHRYVFSESRLGEEG 345 (495)
T ss_pred cccchhhHHHHHHHHHHHHHHhhcccCCCeEEecCCCCCCCCCcchhhhcCCceecccccccccccccccccccccCccc
Confidence 999999999999999999998654 579999999999999999999998765432111 0 000 000
Q ss_pred C---------------cC-C---CcccccCCC----c-chhhhhhhhh-------ccCCccccccccCCCCCCCCccccc
Q 008130 466 I---------------LR-P---HTKLTHQLP----L-VSAYSSFARI-------GVGLGMEHQRRRMDPTTNEPLFTHC 514 (576)
Q Consensus 466 ~---------------~~-~---~~~l~h~~~----L-~Say~~~~~~-------~~g~g~~~~~~~~~~~~~~p~fTn~ 514 (576)
. +. . ..+..+... + ...|...... +.|.|.....-... ..|+|.+|||
T Consensus 346 ~d~~~~~~~~s~~k~~~~~~s~~~~e~~t~~g~~~~~~~~~~~~h~~~~~~~s~~s~g~~~~~~~~~~~-~~gep~vt~~ 424 (495)
T KOG2338|consen 346 EDDEEESAAFSRGKGQLSQASIPKPEIFTATGDKNHLVELTYSEHESLKVNVSLYSHGYGLVHTENAWL-DRGEPGVTNY 424 (495)
T ss_pred ccchhhhhhhccCccccccccCCCccccccccccchhHHHHHHHhhhhhcccceeeccccccchhhccc-cCCCcceecH
Confidence 0 00 0 001111000 0 0011111000 12223333222211 3679999999
Q ss_pred cCccCcceeEEEeeCC-------------CcceeeccccCChhhhccCCCCCCCCCCCCcccEEEEEEE
Q 008130 515 TRDFIGTLDYIFYTAD-------------SLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRC 570 (576)
Q Consensus 515 t~~f~~~IDYIf~s~~-------------~l~v~~~l~~~~~~~~~~~~~lP~~~~pSDH~pl~adf~~ 570 (576)
...+.+.+||||+++. .+.+..++.++..+++.+....|++.++|||++|+|+|.+
T Consensus 425 ~~~~~g~~dyif~~~~~~~~~~~~~~~~~~ikl~~~l~ip~~~e~~k~~~p~~~~~~SDH~aL~~~~~~ 493 (495)
T KOG2338|consen 425 ALTWKGTLDYIFYSPGDCKQSNREFEEDEAIKLKGLLRIPSPQEMWKAGQPPNGRYGSDHIALVAQFSL 493 (495)
T ss_pred HhhhccceeeEEeccCcccccchhhhcccceeEEEEecCCCHHHhhccCCCCCCCCcccceEeeEeeEe
Confidence 9999999999999987 7788889999999999888999999999999999999986
No 4
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=100.00 E-value=8.5e-42 Score=356.78 Aligned_cols=309 Identities=48% Similarity=0.715 Sum_probs=237.3
Q ss_pred CCCceeeeCCCCccccccccCCCCCCCCCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEE
Q 008130 224 SPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCL 303 (576)
Q Consensus 224 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcL 303 (576)
..|.++.++.+ ..++...|+|||||++++.|+....|.|||.|++.|.||++.|+++|..++||||||
T Consensus 2 ~~~~~~~~~~~------------~~~~~~~~~v~s~n~l~~~~~~~~~~~~~~~~~~~w~~r~~~~~~ei~~~~ad~icL 69 (361)
T KOG0620|consen 2 FWRDLISVSGK------------DVPQGETFTVLSYNILSQLYATSKLYMYCPSWALSWEYRRQLLLEEILNYNADILCL 69 (361)
T ss_pred ChhheeeccCC------------CccCCceEEeechhhhhhhhcccCCCcccchhhccHHHHHHHHHHHHhCCCcceeec
Confidence 35677776651 223444999999999999999999999999999999999999999999999999999
Q ss_pred eccchhhHHHHHHHHHhhcCCeEEEeccCC------e------eeeecccccccccc---cC------cccccccccccc
Q 008130 304 QEVQNDHFEEFFAPELDKHGYQALYKRKTN------E------VEFNKAAQSLTDAI---LP------SAQKKNALNRLV 362 (576)
Q Consensus 304 QEV~~~~~~~~l~~~L~~~GY~~~~~~k~~------~------i~f~~~~ls~~~~~---~~------~~~~~~~~~r~~ 362 (576)
||| +.|.+++.+.|...||.|.|..|+. . ++|+...+++.... .. .......+.+.+
T Consensus 70 qev--~~~~~~~~p~l~~~gY~g~~~~k~~~~~~~~~~~dGcaiffk~s~f~li~~~~i~~n~~~~~~~~~~~~~~~~~~ 147 (361)
T KOG0620|consen 70 QEV--DRYHDFFSPELEASGYSGIFIEKTRMGEVELEKIDGCAIFFKPSLFQLIHSSAIELNQLALSRLPPNIAQLNRLT 147 (361)
T ss_pred chh--hHHHHHccchhhhcCCcceeecccccchhhcccCceeeeeecchHHhhhhhhhhhhHHHHHhhcchhHHHHHhhh
Confidence 999 6799999999999999999998641 1 67777666554210 00 001123334444
Q ss_pred -cCcEEE-EEEEeeeecCCCCCCCCCCceEE--EEeeecccCCCchhhHHHHHHHHHHHHH-------HH-------hhc
Q 008130 363 -KDNVAL-IVVLEAKFSNQGADTPGKRQLLC--VANTHVNVHQELKDVKLWQVHTLLKGLE-------KI-------AAS 424 (576)
Q Consensus 363 -~d~val-~~~Le~~~~~~~~~~~~~g~~l~--V~NTHL~~~p~~~~vRl~Q~~~L~~~L~-------~~-------~~~ 424 (576)
+|+++. ++.|+.... ....++ ++|+|++|.+...++++.|+..++..++ ++ .+.
T Consensus 148 ~~d~~~~~l~~L~~~~~--------~~~~~~~~~~n~h~~~~~~~~~vkl~qv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (361)
T KOG0620|consen 148 TLDNSGNKLVSLKAELG--------NMVSLPHLLLNTHILWDLPYEDVKLFQVLTLLLELAPLSPEILKIYREGNLATRI 219 (361)
T ss_pred ccccccchhhhhhhhcC--------CceeeccccccceeccCCCccchHHHHHHHHhhcccccchhhhhhhccccccccc
Confidence 677766 455554321 111111 4899999999999999999999998843 11 011
Q ss_pred CCCCEEEEecCCCCCCChhhHhhhcCCCCCCCCCCCCCCCCCcCC------CcccccCCCcchhhhhhhhhccCCccccc
Q 008130 425 ADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRP------HTKLTHQLPLVSAYSSFARIGVGLGMEHQ 498 (576)
Q Consensus 425 ~~~pvIl~GDFNs~p~S~~~~lL~~g~v~~~h~d~~~~~~~~~~~------~~~l~h~~~L~Say~~~~~~~~g~g~~~~ 498 (576)
..+|+++|||||+.|.+++|.++..|.+...|.||...++..... ...+.|.+.++++|
T Consensus 220 ~~~p~l~~gdfNs~p~~~v~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 284 (361)
T KOG0620|consen 220 ASFPLLLCGDFNSTPLSPVYALLASGILSPEDADNKDLPLMSALGSKVNKSYEEMSHDQRRKLEY--------------- 284 (361)
T ss_pred cccceeeeccccCCCCccceeecccCCCCcchhhHhhccccccccccccccccccchhhhccccc---------------
Confidence 358999999999999999999999999999988887654432111 01244444444443
Q ss_pred cccCCCCCCCCccccccCccCcceeEEEeeCCCcceeeccccCCh-hhhccCCCCCCCCCCCCcccEEEEEEEecCCC
Q 008130 499 RRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDE-DSLRKDTALPSPEWSSDHIALLAEFRCKPRAR 575 (576)
Q Consensus 499 ~~~~~~~~~~p~fTn~t~~f~~~IDYIf~s~~~l~v~~~l~~~~~-~~~~~~~~lP~~~~pSDH~pl~adf~~k~~~~ 575 (576)
.++++.|||++++|.|+||||||++..+.+..++..+++ ++..++.++||.++||||+||+|+|++.+.++
T Consensus 285 ------~~~~~~ftn~t~~F~g~~DYIfys~~~~~~~~~L~~~~e~~~~~~~~~lPs~~~pSDHi~L~~ef~~~~~~~ 356 (361)
T KOG0620|consen 285 ------TTGEPRFTNYTPGFKGTLDYIFYSKAALIVESALELLDEDELVIKVTGLPSPHHPSDHIPLLAEFEIAPPKD 356 (361)
T ss_pred ------ccCccccccccCCccceeeEEEEccccccccccccCCChhhhhcccccCCCCCCCCccchhhccccccCccc
Confidence 356778999999999999999999999999999999994 78889999999999999999999999988764
No 5
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.91 E-value=6.1e-23 Score=210.61 Aligned_cols=173 Identities=15% Similarity=0.071 Sum_probs=110.5
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHh-hcCCeEEEeccC
Q 008130 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGYQALYKRKT 332 (576)
Q Consensus 254 ~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~-~~GY~~~~~~k~ 332 (576)
||||||||....+.- .+...|+.|.++|++.+...++||||||||......+.+...|+ .++|...+....
T Consensus 1 lkVmtyNv~~l~~~~--------~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~~~~~~~l~~~L~~~yp~~~~~~g~~ 72 (283)
T TIGR03395 1 IKILSHNVYMLSTNL--------YPNWGQMERADLIASADYIKNQDVVILNEAFDTSASKRLLDNLREEYPYQTDVIGRS 72 (283)
T ss_pred CeEEEEEeeeecccc--------cCCccHhHHHHHHHHhhcccCCCEEEEecccchHHHHHHHHHHHhhCCceEeecccc
Confidence 689999998632111 12345899999999999999999999999987665554556664 466654322211
Q ss_pred C--------------eeeeecccccccccccCccccccccccc-----ccCcEEEEEEEeeeecCCCCCCCCCCceEEEE
Q 008130 333 N--------------EVEFNKAAQSLTDAILPSAQKKNALNRL-----VKDNVALIVVLEAKFSNQGADTPGKRQLLCVA 393 (576)
Q Consensus 333 ~--------------~i~f~~~~ls~~~~~~~~~~~~~~~~r~-----~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~ 393 (576)
. ....+...+|+.+..... ...+... ...+.++.+.++. .|+.|.|+
T Consensus 73 ~~g~~~~~g~~~~~~~~~~G~~iLSr~Pi~~~~---~~~f~~~~~~d~~~~kg~l~a~i~~-----------~g~~~~v~ 138 (283)
T TIGR03395 73 KKGWDKTLGNYSSSALEDGGVAIVSKWPIEEKI---QYIFNKGCGADNLSNKGFAYVKINK-----------NGKKFHVI 138 (283)
T ss_pred cccchhccccccccCccCCEEEEEECCCccccE---EEEccCCCCCccccCCceEEEEEec-----------CCeEEEEE
Confidence 0 012233445554432210 0011111 1123444444432 46789999
Q ss_pred eeecccCCC------chhhHHHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChhhHhhh
Q 008130 394 NTHVNVHQE------LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLA 448 (576)
Q Consensus 394 NTHL~~~p~------~~~vRl~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~~~lL~ 448 (576)
||||.+... ....|..|+..|.++|++.....+.|+|||||||..|++..|+.|.
T Consensus 139 ~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~~~~~~pvIl~GDfN~~~~s~~~~~ml 199 (283)
T TIGR03395 139 GTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKNIPKDETVLIGGDLNVNKGSNEYHDMF 199 (283)
T ss_pred EeCCCCCcccccccccHHHHHHHHHHHHHHHhhccCCCCceEEEEeeCCCCCCCHHHHHHH
Confidence 999976421 2578999999999988754322457899999999999999998664
No 6
>PRK11756 exonuclease III; Provisional
Probab=99.90 E-value=4.2e-23 Score=210.38 Aligned_cols=253 Identities=21% Similarity=0.232 Sum_probs=138.9
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEEeccCC
Q 008130 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (576)
Q Consensus 254 ~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k~~ 333 (576)
+|||||||.. +..|.+.|++.|...+||||||||+.... ..+....+...||..++..+.+
T Consensus 1 mri~T~Nv~g------------------~~~~~~~i~~~i~~~~pDIi~LQE~~~~~-~~~~~~~~~~~gy~~~~~~~~~ 61 (268)
T PRK11756 1 MKFVSFNING------------------LRARPHQLEAIIEKHQPDVIGLQETKVHD-EMFPLEEVEALGYHVFYHGQKG 61 (268)
T ss_pred CEEEEEEcCC------------------HHHHHHHHHHHHHhcCCCEEEEEeccccc-ccCCHHHHHhcCCEEEEeCCCC
Confidence 5899999986 34566789999999999999999985321 1111223456899877664432
Q ss_pred eeeeecccccccccccCccccccccc-ccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCC-----chhhH
Q 008130 334 EVEFNKAAQSLTDAILPSAQKKNALN-RLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQE-----LKDVK 407 (576)
Q Consensus 334 ~i~f~~~~ls~~~~~~~~~~~~~~~~-r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~-----~~~vR 407 (576)
.++.+.+++.+..... ..... .....+..+.+.++. + .+ .+.|+|+|+..... ....|
T Consensus 62 --~~GvailSr~p~~~~~---~~~~~~~~~~~~r~l~~~i~~---------~-~g-~~~v~n~y~P~~~~~~~~~~~~~r 125 (268)
T PRK11756 62 --HYGVALLSKQTPIAVR---KGFPTDDEEAQRRIIMATIPT---------P-NG-NLTVINGYFPQGESRDHPTKFPAK 125 (268)
T ss_pred --CCEEEEEECCChHHeE---ECCCCccccccCCEEEEEEEc---------C-CC-CEEEEEEEecCCCCCCcchhHHHH
Confidence 2334444443321100 00000 000112234444443 1 23 38999999954321 12357
Q ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChhhHhhhcCCCCCCCCCCCCCCCCCcCCCcccccCCCcchhhhhhh
Q 008130 408 LWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFA 487 (576)
Q Consensus 408 l~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~~~lL~~g~v~~~h~d~~~~~~~~~~~~~~l~h~~~L~Say~~~~ 487 (576)
..|+..|.+.|.+... .+.|+|||||||..|++.-.. .+ ..++..|.......+.+ .-+..+..+
T Consensus 126 ~~~~~~l~~~l~~~~~-~~~pvIl~GDfN~~~~~~D~~---~~--~~~~~~~~~~~~~~~~~--------~er~~~~~l- 190 (268)
T PRK11756 126 RQFYQDLQNYLETELS-PDNPLLIMGDMNISPTDLDIG---IG--EENRKRWLRTGKCSFLP--------EEREWLDRL- 190 (268)
T ss_pred HHHHHHHHHHHHHHhc-cCCCEEEEeecccCCChhhcC---Cc--ccChHHhcccCCccCCH--------HHHHHHHHH-
Confidence 7888889888887642 456999999999988743210 00 00011110000000000 001122211
Q ss_pred hhccCCccccccccCCCCCCCCcccccc-------CccCcceeEEEeeCCCcc--eeeccccCChhhhccCCCCCCCCCC
Q 008130 488 RIGVGLGMEHQRRRMDPTTNEPLFTHCT-------RDFIGTLDYIFYTADSLS--VESLLELLDEDSLRKDTALPSPEWS 558 (576)
Q Consensus 488 ~~~~g~g~~~~~~~~~~~~~~p~fTn~t-------~~f~~~IDYIf~s~~~l~--v~~~l~~~~~~~~~~~~~lP~~~~p 558 (576)
...|+.|.+|.+++. ..+.||+|. .+.+.||||||+++. +. +.... + ..+. ....+|
T Consensus 191 ---~~~~l~D~~R~~~p~-~~~~~T~~~~~~~~~~~~~g~RIDyi~~s~~-~~~~v~~~~-i-~~~~-------~~~~~~ 256 (268)
T PRK11756 191 ---MDWGLVDTFRQLNPD-VNDRFSWFDYRSKGFDDNRGLRIDLILATQP-LAERCVETG-I-DYDI-------RGMEKP 256 (268)
T ss_pred ---HhCCcEeehhhhCCC-CCCcccCcCCcccccccCCceEEEEEEeCHH-HHhhheEeE-E-eHHH-------hCCCCC
Confidence 234567777766653 245788762 235789999999977 33 22221 1 1111 124579
Q ss_pred CCcccEEEEEEE
Q 008130 559 SDHIALLAEFRC 570 (576)
Q Consensus 559 SDH~pl~adf~~ 570 (576)
|||.||+++|++
T Consensus 257 SDH~PV~~~~~~ 268 (268)
T PRK11756 257 SDHAPIWATFKL 268 (268)
T ss_pred CCcccEEEEEeC
Confidence 999999999974
No 7
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.87 E-value=1.2e-21 Score=194.57 Aligned_cols=234 Identities=28% Similarity=0.316 Sum_probs=140.7
Q ss_pred cEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchh------hHHHHHHHHHh-hcCCe
Q 008130 253 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQND------HFEEFFAPELD-KHGYQ 325 (576)
Q Consensus 253 ~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~------~~~~~l~~~L~-~~GY~ 325 (576)
.++|+||||..+.- ..++.++.+.+.+.|.+..+|||||||++.. .+.+. ...+. ..|..
T Consensus 9 ~~~v~TyNih~~~~------------~~d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~-~~~~~~~~~~~ 75 (259)
T COG3568 9 RFKVLTYNIHKGFG------------AFDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHRDGLLDL-PHLLGRLGLAP 75 (259)
T ss_pred eeEEEEEEEEEccC------------ccCceecHHHHHHHHHhhccCeeeeecccccccccccccchh-HHHHHHhcCCc
Confidence 48999999987541 1146677889999999999999999999852 12222 22222 23332
Q ss_pred EEEeccC-----CeeeeecccccccccccCccccccccc--ccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecc
Q 008130 326 ALYKRKT-----NEVEFNKAAQSLTDAILPSAQKKNALN--RLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVN 398 (576)
Q Consensus 326 ~~~~~k~-----~~i~f~~~~ls~~~~~~~~~~~~~~~~--r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~ 398 (576)
..+..-. ..-.++...+|..+..... ...+. ..+..+.++++.++. + .++.|.|+|+||.
T Consensus 76 ~~~~~~~~~a~~~~~~~GnaiLS~~pi~~v~---~~~lp~~~~~~~Rgal~a~~~~---------~-~g~~l~V~~~HL~ 142 (259)
T COG3568 76 YWWSGAAFGAVYGEGQHGNAILSRLPIRDVE---NLALPDPTGLEPRGALLAEIEL---------P-GGKPLRVINAHLG 142 (259)
T ss_pred cccchhhhhhhcccceeeeEEEecCcccchh---hccCCCCCCCCCceeEEEEEEc---------C-CCCEEEEEEEecc
Confidence 2221110 1113445555544332111 11111 123456788887775 2 3678999999998
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChhhHhhhcCCCCCCCCCCCCCCCCCcCCCcccccCCC
Q 008130 399 VHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLP 478 (576)
Q Consensus 399 ~~p~~~~vRl~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~~~lL~~g~v~~~h~d~~~~~~~~~~~~~~l~h~~~ 478 (576)
+. ...|+.|+..|++.+.- . ..+ |+|+|||||+.|+|+.|++......+... .
T Consensus 143 l~---~~~R~~Q~~~L~~~~~l-~-~~~-p~vl~GDFN~~p~s~~yr~~~~~~~~~~~---------------------~ 195 (259)
T COG3568 143 LS---EESRLRQAAALLALAGL-P-ALN-PTVLMGDFNNEPGSAEYRLAARSPLNAQA---------------------A 195 (259)
T ss_pred cc---HHHHHHHHHHHHhhccC-c-ccC-ceEEEccCCCCCCCccceeccCCchhhcc---------------------c
Confidence 64 46899999999883221 1 123 99999999999999999765432211100 0
Q ss_pred cchhhhhhhhhccCCccccccccCCCCCC--CCccccccCccCcceeEEEeeCCCcceeeccccCChhhhccCCCCCCCC
Q 008130 479 LVSAYSSFARIGVGLGMEHQRRRMDPTTN--EPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPE 556 (576)
Q Consensus 479 L~Say~~~~~~~~g~g~~~~~~~~~~~~~--~p~fTn~t~~f~~~IDYIf~s~~~l~v~~~l~~~~~~~~~~~~~lP~~~ 556 (576)
+..++.. ..+ .+.|.-+++. .+|||||.+++ +.+.+.....+.. ..
T Consensus 196 ~~~~~~~-------------------a~~~~~~tfps~~p~--lriD~Ifvs~~-~~i~~~~v~~~~~----------a~ 243 (259)
T COG3568 196 LTGAFAP-------------------AVGRTIRTFPSNTPL--LRLDRIFVSKE-LAIRSVHVLTDRL----------AR 243 (259)
T ss_pred cccccCc-------------------ccCcccCCCCCCCcc--ccccEEEecCc-ccEEEEEeecCCC----------cc
Confidence 0000000 011 2344444443 39999999987 6666554443321 24
Q ss_pred CCCCcccEEEEEEEe
Q 008130 557 WSSDHIALLAEFRCK 571 (576)
Q Consensus 557 ~pSDH~pl~adf~~k 571 (576)
..|||+||.|+++++
T Consensus 244 ~aSDHlPl~aeL~~~ 258 (259)
T COG3568 244 VASDHLPLLAELRLK 258 (259)
T ss_pred ccccccceEEEEecC
Confidence 579999999999986
No 8
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.1e-20 Score=188.26 Aligned_cols=246 Identities=22% Similarity=0.291 Sum_probs=140.8
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEEeccCC
Q 008130 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (576)
Q Consensus 254 ~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k~~ 333 (576)
+||+||||.+ ...|...+++.|.+.+||||||||+... -..|-...++..||++++.....
T Consensus 1 mkI~SwNVNg------------------iRar~~~~~~~l~~~~pDVlclQEtK~~-~~~fp~~~~~~~GY~~~~~~gqK 61 (261)
T COG0708 1 MKIASWNVNG------------------LRARLKKLLDWLEEEQPDVLCLQETKAQ-DEQFPREELEALGYHHVFNHGQK 61 (261)
T ss_pred CeeEEEehhh------------------HHHHHHHHHHHHHHhCCCEEEEEecccC-cccCCHhHHhhCCceEEEecCcC
Confidence 5899999998 4567778999999999999999999542 12233455667899655543222
Q ss_pred eeeeec-ccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCC----chhhHH
Q 008130 334 EVEFNK-AAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQE----LKDVKL 408 (576)
Q Consensus 334 ~i~f~~-~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~----~~~vRl 408 (576)
. |+. +.+++.+......+-.......-..++ ++..+ .+ |.|+|..+..+.. .-+.|+
T Consensus 62 g--ysGVailsr~~~~~v~~g~~~~~~~d~e~R~-----I~a~~---------~~--~~v~~~Y~PnG~~~~~~k~~yKl 123 (261)
T COG0708 62 G--YSGVAILSKKPPDDVRRGFPGEEEDDEEGRV-----IEAEF---------DG--FRVINLYFPNGSSIGLEKFDYKL 123 (261)
T ss_pred C--cceEEEEEccCchhhhcCCCCCccccccCcE-----EEEEE---------CC--EEEEEEEcCCCCCCCCcchHHHH
Confidence 1 222 233332211000000000000001111 22222 12 8889988843221 235677
Q ss_pred HHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChhhHhhhcCCCCCCCC--CCC-CCCCCCcCCCcccccCCCcchhhhh
Q 008130 409 WQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHP--DLA-VDPLTILRPHTKLTHQLPLVSAYSS 485 (576)
Q Consensus 409 ~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~~~lL~~g~v~~~h~--d~~-~~~~~~~~~~~~l~h~~~L~Say~~ 485 (576)
.-...+.++++++.+. +.|+|+|||||..|.. +|...+ .|. .+..+..++ -+.++..
T Consensus 124 ~f~~~l~~~l~~l~~~-~~~~vl~GD~NIap~~----------iDv~~~~~~~~n~~~~~f~~e---------eR~~~~~ 183 (261)
T COG0708 124 RFLDALRNYLEELLKK-GKPVVLCGDFNIAPEE----------IDVANPKKRWLNEGNSGFLPE---------ERAWFRR 183 (261)
T ss_pred HHHHHHHHHHHHHhhc-CCCEEEecccccCCch----------hcccCchhhhhcCCCCCCCHH---------HHHHHHH
Confidence 7778888888887653 4799999999998862 222222 221 111111111 0223333
Q ss_pred hhhhccCCccccccccCCCCCCCCcccccc-------CccCcceeEEEeeCCCcceeeccccCChhhhccCCCCCCCCCC
Q 008130 486 FARIGVGLGMEHQRRRMDPTTNEPLFTHCT-------RDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWS 558 (576)
Q Consensus 486 ~~~~~~g~g~~~~~~~~~~~~~~p~fTn~t-------~~f~~~IDYIf~s~~~l~v~~~l~~~~~~~~~~~~~lP~~~~p 558 (576)
+ ...|+.|+.|.+.+..+. ||+|. .+.+.|||||+.|+. |.-.-.-..++. +++. ...|
T Consensus 184 l----l~~G~~D~~R~~~p~~~~--YTwW~YR~~~~~~n~G~RID~~l~S~~-L~~~~~~a~I~~-~~rg------~e~p 249 (261)
T COG0708 184 L----LNAGFVDTFRLFHPEPEK--YTWWDYRANAARRNRGWRIDYILVSPA-LADRLKDAGIDR-EVRG------WEKP 249 (261)
T ss_pred H----HHcchhhhhHhhCCCCCc--ccccccccchhhhcCceeEEEEEeCHH-HHHHHHhcCccH-HHhc------CCCC
Confidence 2 567899999988875443 99983 246889999999987 322111111221 2221 3568
Q ss_pred CCcccEEEEEEE
Q 008130 559 SDHIALLAEFRC 570 (576)
Q Consensus 559 SDH~pl~adf~~ 570 (576)
|||.||.++|++
T Consensus 250 SDHaPV~~e~~~ 261 (261)
T COG0708 250 SDHAPVWVELDL 261 (261)
T ss_pred CCcCcEEEEecC
Confidence 999999999864
No 9
>PRK05421 hypothetical protein; Provisional
Probab=99.84 E-value=8.6e-20 Score=185.70 Aligned_cols=153 Identities=21% Similarity=0.181 Sum_probs=90.2
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEEe
Q 008130 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 329 (576)
Q Consensus 250 ~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~ 329 (576)
.+++||||||||+...-. +....++.| ..+|||||||||+.... +...+...|+...|.
T Consensus 40 ~~~~lri~t~NI~~~~~~-----------------~~~~~l~~l-~~~~DiI~LQEv~~~~~---~~~~~~~~~~~~~~~ 98 (263)
T PRK05421 40 TEERLRLLVWNIYKQQRA-----------------GWLSVLKNL-GKDADLVLLQEAQTTPE---LVQFATANYLAADQA 98 (263)
T ss_pred cCCceeEEEEEccccccc-----------------cHHHHHHHh-ccCCCEEEEEecccCcc---hHHHhhcccchHHhc
Confidence 357899999999975411 123455555 99999999999975432 122233344443222
Q ss_pred ----ccCCeeeeecccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCCchh
Q 008130 330 ----RKTNEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKD 405 (576)
Q Consensus 330 ----~k~~~i~f~~~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~ 405 (576)
...+ .++...+|+.+....... ..........+.++++.++. + .++.+.|+||||........
T Consensus 99 ~~~~~~~~--~~GvaiLSR~pi~~~~~~-~~~~~~~~~~r~~l~a~~~~---------~-~g~~l~v~ntHl~~~~~~~~ 165 (263)
T PRK05421 99 PAFVLPQH--PSGVMTLSKAHPVYCCPL-REREPWLRLPKSALITEYPL---------P-NGRTLLVVNIHAINFSLGVD 165 (263)
T ss_pred cccccCCC--ccceeEeeecccceeecc-CCCCccccCcceeEEEEEEe---------C-CCCEEEEEEECccccCcChH
Confidence 1111 345555555543210000 00000011245666776654 1 35579999999953222346
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCC
Q 008130 406 VKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPG 440 (576)
Q Consensus 406 vRl~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~ 440 (576)
.|..|+..|.+.+... +.|+|+|||||+.+.
T Consensus 166 ~r~~q~~~l~~~~~~~----~~p~Il~GDFN~~~~ 196 (263)
T PRK05421 166 VYSKQLEPIGDQIAHH----SGPVILAGDFNTWSR 196 (263)
T ss_pred HHHHHHHHHHHHHHhC----CCCEEEEcccccCcc
Confidence 6888998888877643 459999999998765
No 10
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=99.81 E-value=5e-19 Score=178.96 Aligned_cols=241 Identities=21% Similarity=0.258 Sum_probs=126.5
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEEeccCC
Q 008130 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (576)
Q Consensus 254 ~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k~~ 333 (576)
+||+||||... ..+.+.++++|...+||||||||+.... ..+....+...||..++....+
T Consensus 1 mri~t~Ni~g~------------------~~~~~~~~~~l~~~~~DIi~LQE~~~~~-~~~~~~~~~~~g~~~~~~~~~g 61 (254)
T TIGR00195 1 MKIISWNVNGL------------------RARLHKGLAWLKENQPDVLCLQETKVQD-EQFPLEPFHKEGYHVFFSGQKG 61 (254)
T ss_pred CEEEEEEcCcH------------------HHhHHHHHHHHHhcCCCEEEEEecccch-hhCCHHHhhcCCcEEEEecCCC
Confidence 68999999862 2334558999999999999999996532 1222333456899877665422
Q ss_pred eeeeecccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCC----CchhhHHH
Q 008130 334 EVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQ----ELKDVKLW 409 (576)
Q Consensus 334 ~i~f~~~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p----~~~~vRl~ 409 (576)
. .+...+++...+....+ ..........++. .++. . .+.|+|||+.... +....|..
T Consensus 62 ~--~Gvailsr~~~~~~~~~-~~~~~~~~~~r~i---~~~~-----------~--~~~l~~~~~p~~~~~~~~~~~~r~~ 122 (254)
T TIGR00195 62 Y--SGVAIFSKEEPLSVRRG-FGVEEEDAEGRII---MAEF-----------D--SFLVINGYFPNGSRDDSEKLPYKLQ 122 (254)
T ss_pred c--ceEEEEEcCCcceEEEC-CCCcccccCCCEE---EEEE-----------C--CEEEEEEEccCCCCCCCccHHHHHH
Confidence 1 22222222111100000 0000000122321 1222 1 2789999995421 12345778
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChhhHhhhcCCCCCCCCCCCCCCCCCcCCCcccccCCCcchhhhhhhhh
Q 008130 410 QVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARI 489 (576)
Q Consensus 410 Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~~~lL~~g~v~~~h~d~~~~~~~~~~~~~~l~h~~~L~Say~~~~~~ 489 (576)
++..|.+.+.++.. .+.|+|+|||||..+.+.-. ..++...+..+... .....+..+
T Consensus 123 ~~~~l~~~~~~~~~-~~~pvIi~GDfN~~~~~~d~----------~~~~~~~~~~~~~~---------~e~~~~~~l--- 179 (254)
T TIGR00195 123 WLEALQNYLEKLVD-KDKPVLICGDMNIAPTEIDL----------HSPDENRNHTGFLP---------EEREWLDRL--- 179 (254)
T ss_pred HHHHHHHHHHHHHh-cCCcEEEEeecccCCChhhc----------cChhhcCCCcCcCh---------HHHHHHHHH---
Confidence 88888888887643 34699999999998874211 00000000000000 001112221
Q ss_pred ccCCccccccccCCCCCCCCccccccC-------ccCcceeEEEeeCCCcc--eeeccccCChhhhccCCCCCCCCCCCC
Q 008130 490 GVGLGMEHQRRRMDPTTNEPLFTHCTR-------DFIGTLDYIFYTADSLS--VESLLELLDEDSLRKDTALPSPEWSSD 560 (576)
Q Consensus 490 ~~g~g~~~~~~~~~~~~~~p~fTn~t~-------~f~~~IDYIf~s~~~l~--v~~~l~~~~~~~~~~~~~lP~~~~pSD 560 (576)
...|+.|..+...+. ...||+|.. +.+.||||||++++ +. +.+..-..+ . ....++||
T Consensus 180 -~~~~l~D~~r~~~~~--~~~~T~~~~~~~~~~~~~g~RID~i~~s~~-~~~~v~~~~i~~~--~-------~~~~~~SD 246 (254)
T TIGR00195 180 -LEAGLVDTFRKFNPD--EGAYSWWDYRTKARDRNRGWRIDYFLVSEP-LKERCVDCGIDYD--I-------RGSEKPSD 246 (254)
T ss_pred -HHcCCEeeecccCCC--CCCCcccCCcCCccccCCceEEEEEEECHH-HHhhhhEEEEcHH--H-------hcCCCCCC
Confidence 122455555544443 346887631 34569999999987 33 222211110 0 01346899
Q ss_pred cccEEEEE
Q 008130 561 HIALLAEF 568 (576)
Q Consensus 561 H~pl~adf 568 (576)
|.||+++|
T Consensus 247 H~Pv~~~~ 254 (254)
T TIGR00195 247 HCPVVLEF 254 (254)
T ss_pred cccEEEeC
Confidence 99999985
No 11
>PTZ00297 pantothenate kinase; Provisional
Probab=99.78 E-value=8.3e-18 Score=202.74 Aligned_cols=180 Identities=21% Similarity=0.197 Sum_probs=101.2
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhc-CCCcEEEEeccchhh-----------HHHHHHH
Q 008130 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIG-YRADIVCLQEVQNDH-----------FEEFFAP 317 (576)
Q Consensus 250 ~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~-~~aDIIcLQEV~~~~-----------~~~~l~~ 317 (576)
....||||||||..-. .+.-.|. .+.|...|.. .++||||||||.... +...+..
T Consensus 7 ~~~~l~VlTyNv~~~~-----------~~~~~~~--~~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~~~ 73 (1452)
T PTZ00297 7 GCAQARVLSYNFNILP-----------RGCGGFQ--HERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKMLVD 73 (1452)
T ss_pred CCCceEEEEEEccccC-----------CCccccc--HHHHHHHHHhccCCCEEEEecccccccccccccccchhhHHHHH
Confidence 4558999999987521 0111122 3556666666 477999999997632 2334466
Q ss_pred HHhhcCCeEEEeccCCe----------eeeecccccccccccCcccccc--cccccccCcEEEEEEEeeeecCCCCCCCC
Q 008130 318 ELDKHGYQALYKRKTNE----------VEFNKAAQSLTDAILPSAQKKN--ALNRLVKDNVALIVVLEAKFSNQGADTPG 385 (576)
Q Consensus 318 ~L~~~GY~~~~~~k~~~----------i~f~~~~ls~~~~~~~~~~~~~--~~~r~~~d~val~~~Le~~~~~~~~~~~~ 385 (576)
.|++.||..+...+... ...+.+.+|+.+.......... ........+.++.+.++.... .+
T Consensus 74 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~AILSR~PI~~~~~~~l~~~~~~~~~~~RG~L~a~I~vp~~------~g 147 (1452)
T PTZ00297 74 ELKARGFHHYVISKQPSYLTMLRYNVCSDNGLIIASRFPIWQRGSYTFRNHERGEQSVRRGCLFAEVEVPLA------EG 147 (1452)
T ss_pred HHHhcCCceeEeecCccccccccCccccCCEEEEEECCChhhceeeecCcccccccccccceEEEEEEcccc------CC
Confidence 67778997654433221 1123345565554321100000 000001234556666554100 01
Q ss_pred CCceEEEEeeecccCCCchhhHHHHHHHHHHHHHH-Hh-------hcCCCCEEEEecCCCC----C----CChhhHhhhc
Q 008130 386 KRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEK-IA-------ASADIPMLVCGDFNSV----P----GSAPHALLAM 449 (576)
Q Consensus 386 ~g~~l~V~NTHL~~~p~~~~vRl~Q~~~L~~~L~~-~~-------~~~~~pvIl~GDFNs~----p----~S~~~~lL~~ 449 (576)
..+.+.|+||||.+.... ..|..|++.+.+.++. +. ...+.|+|||||||.. + .+..|+.|.+
T Consensus 148 ~~~~v~v~~tHL~~~~~~-~~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~~~~~~~~~~~s~e~~~ml~ 226 (1452)
T PTZ00297 148 GSQRIVFFNVHLRQEDSL-PSTSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNINGIDPHNGGHPTKRFQELLN 226 (1452)
T ss_pred CCceEEEEEeCCCCCCCc-chHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCccccccccCCccHHHHHHHH
Confidence 235799999999875432 4588898888888775 21 1134699999999965 2 4456655543
No 12
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.78 E-value=3.4e-18 Score=172.94 Aligned_cols=270 Identities=20% Similarity=0.215 Sum_probs=158.0
Q ss_pred CCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHh-hcCCeEEEe
Q 008130 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGYQALYK 329 (576)
Q Consensus 251 ~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~-~~GY~~~~~ 329 (576)
.-.+||+|.|+|+-.|++++ -..|...+-+++.+...||+.||||+...-..+|+..+. .+.|..+|.
T Consensus 6 a~~lriltlN~Wgip~~Sk~-----------R~~Rm~~~g~~l~~E~yDiv~LQEvWs~eD~~~L~~~~ss~yPysh~FH 74 (422)
T KOG3873|consen 6 ALELRILTLNIWGIPYVSKD-----------RRHRMDAIGDELASEKYDIVSLQEVWSQEDFEYLQSGCSSVYPYSHYFH 74 (422)
T ss_pred hheeeeeEeeccccccccch-----------hHHHHHHHhHHHhhcccchhhHHHHHHHHHHHHHHHhccccCchHHhhh
Confidence 45799999999997766543 457888999999999999999999976433334455444 466765555
Q ss_pred ccC-Ce--eeeecccccc-cccccCcccccccccccc---cCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccC--
Q 008130 330 RKT-NE--VEFNKAAQSL-TDAILPSAQKKNALNRLV---KDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVH-- 400 (576)
Q Consensus 330 ~k~-~~--i~f~~~~ls~-~~~~~~~~~~~~~~~r~~---~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~-- 400 (576)
+.- +. ..|++..+.- .--..+.++....+.|.. ..-+++ .+|.. .++.|.++||||++.
T Consensus 75 SGimGaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl-~~l~~-----------~g~~v~~yntHLHAeY~ 142 (422)
T KOG3873|consen 75 SGIMGAGLCVFSKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGL-TVLLV-----------GGRMVNLYNTHLHAEYD 142 (422)
T ss_pred cccccCceEEeecCchhhhhhhccccCCccceeeeccccccceeEE-EEEee-----------CCEEeeeeehhcccccc
Confidence 431 11 3455544321 111122233333333321 223443 34443 468999999999752
Q ss_pred CC---chhhHHHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChhhHhhhc-CCCC---CCCCCCCCCCCCCcCCCccc
Q 008130 401 QE---LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAM-GKVE---PVHPDLAVDPLTILRPHTKL 473 (576)
Q Consensus 401 p~---~~~vRl~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~~~lL~~-g~v~---~~h~d~~~~~~~~~~~~~~l 473 (576)
.. +--.|..|+..+.+.|+...+. ..-||+|||||+.|.+-.+++|+. |.+| ..|+|-...+.+++....++
T Consensus 143 rq~D~YL~HR~~QAwdlaqfi~~t~q~-~~vVI~~GDLN~~P~dl~~~ll~~a~l~daw~~~h~~q~e~~~~r~s~~~~l 221 (422)
T KOG3873|consen 143 RQNDEYLCHRVAQAWDLAQFIRATRQN-ADVVILAGDLNMQPQDLGHKLLLSAGLVDAWTSLHLDQCESDSFRLSEDKEL 221 (422)
T ss_pred ccCchhhhHHHHHHHHHHHHHHHHhcC-CcEEEEecCCCCCccccceeeeeccchhhhHhhhchhhhcCcccccchhhhh
Confidence 21 2346999999999999876643 346999999999999999998763 3332 12333332222222111111
Q ss_pred ccCCCcchhhhhhhhhccCCccccccccCCCCCCCCccccc----cCccCcceeEEEeeCCCcceeeccccCChhhhccC
Q 008130 474 THQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHC----TRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKD 549 (576)
Q Consensus 474 ~h~~~L~Say~~~~~~~~g~g~~~~~~~~~~~~~~p~fTn~----t~~f~~~IDYIf~s~~~l~v~~~l~~~~~~~~~~~ 549 (576)
.. | + ++ | +....||.- ...++.||||||+++..+......-... .
T Consensus 222 ~~----------------g-~---tc---d--~~~N~y~~aqk~~ddp~~~RiDYvl~k~~~~~~~~a~~~~t------~ 270 (422)
T KOG3873|consen 222 VE----------------G-N---TC---D--SPLNCYTSAQKREDDPLGKRIDYVLVKPGDCNAKIAEVEFT------E 270 (422)
T ss_pred hc----------------C-C---cc---c--CcchhhhHHHhCCCCccceeeeEEEEcCcceEEEeeeEEec------C
Confidence 00 0 0 00 0 011122211 1235889999999998655432211111 1
Q ss_pred CCCCC-CCCCCCcccEEEEEEEecCCC
Q 008130 550 TALPS-PEWSSDHIALLAEFRCKPRAR 575 (576)
Q Consensus 550 ~~lP~-~~~pSDH~pl~adf~~k~~~~ 575 (576)
+..|. ...-|||.+++|.|.+++.-+
T Consensus 271 ~rvP~~d~s~SDH~Al~a~L~I~~~~~ 297 (422)
T KOG3873|consen 271 PRVPGEDCSYSDHEALMATLKIFKQPP 297 (422)
T ss_pred CCCCCCCCCccchhhheeEEEeecCCC
Confidence 12232 334699999999999987643
No 13
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=1.1e-17 Score=168.47 Aligned_cols=150 Identities=21% Similarity=0.255 Sum_probs=83.3
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHH-HHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEEeccC
Q 008130 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNL-LREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKT 332 (576)
Q Consensus 254 ~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I-~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k~ 332 (576)
|||+||||.... .|.+.+ ++.|..++||||||||+.... ..+....+...||..++....
T Consensus 1 lri~t~Nv~g~~------------------~~~~~~~~~~l~~~~~DIv~LQE~~~~~-~~~~~~~~~~~g~~~~~~~~~ 61 (255)
T TIGR00633 1 MKIISWNVNGLR------------------ARLHKLFLDWLKEEQPDVLCLQETKVAD-EQFPAELFEELGYHVFFHGAK 61 (255)
T ss_pred CEEEEEecccHH------------------HHhhccHHHHHHhcCCCEEEEEeccCch-hhCCHhHhccCCceEEEeecc
Confidence 689999998632 233455 899999999999999997643 222223345679987775432
Q ss_pred CeeeeecccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCCc----hhhHH
Q 008130 333 NEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQEL----KDVKL 408 (576)
Q Consensus 333 ~~i~f~~~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~~----~~vRl 408 (576)
..-..+...+++.+......+ ..........+ .+.++. +.+.|+|+|+...... ...|.
T Consensus 62 ~~~~~G~ailsr~~~~~~~~~-~~~~~~~~~~r---~l~~~~-------------~~~~i~~vy~p~~~~~~~~~~~~r~ 124 (255)
T TIGR00633 62 SKGYSGVAILSKVEPLDVRYG-FGGEEHDEEGR---VITAEF-------------DGFTVVNVYVPNGGSRGLERLEYKL 124 (255)
T ss_pred cCCcceEEEEEcCCcceEEEC-CCCCcccCCCc---EEEEEE-------------CCEEEEEEEccCCCCCCchhHHHHH
Confidence 100122223332211000000 00000000111 111221 2488999999543311 24567
Q ss_pred HHHHHHHHHHHHHhhcCCCCEEEEecCCCCCC
Q 008130 409 WQVHTLLKGLEKIAASADIPMLVCGDFNSVPG 440 (576)
Q Consensus 409 ~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~ 440 (576)
.|...+.+.+.+... .+.|+|+|||||+.++
T Consensus 125 ~~~~~l~~~~~~~~~-~~~~~Il~GDFN~~~~ 155 (255)
T TIGR00633 125 QFWDALFQYYEKELD-AGKPVIICGDMNVAHT 155 (255)
T ss_pred HHHHHHHHHHHHHHh-cCCcEEEEeecccCCC
Confidence 777777776655432 3469999999999875
No 14
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=99.76 E-value=2.5e-17 Score=166.14 Aligned_cols=236 Identities=15% Similarity=0.213 Sum_probs=123.0
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCccccCHHHHH-HHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEEeccC
Q 008130 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRR-QNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKT 332 (576)
Q Consensus 254 ~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~-~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k~ 332 (576)
+||+||||.+-+ .|. +.+.+.|...+||||||||+...... + .+...||..++....
T Consensus 1 mki~swNVNgir------------------~~~~~~~~~~l~~~~~DIiclQEtK~~~~~-~---~~~~~gY~~~~~~~~ 58 (250)
T PRK13911 1 MKLISWNVNGLR------------------ACMTKGFMDFFNSVDADVFCIQESKMQQEQ-N---TFEFKGYFDFWNCAI 58 (250)
T ss_pred CEEEEEEeCChh------------------HhhhhhHHHHHHhcCCCEEEEEeecccccc-c---ccccCCceEEEEecc
Confidence 589999999832 333 35889999999999999999653321 1 134579976654221
Q ss_pred Ceeeee-cccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCC---chhhHH
Q 008130 333 NEVEFN-KAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQE---LKDVKL 408 (576)
Q Consensus 333 ~~i~f~-~~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~---~~~vRl 408 (576)
.. -|+ .+.+++........+... .......++ +.++. ..+.|+|+....... .-..|+
T Consensus 59 ~k-gy~GVAi~~k~~~~~v~~~~~~-~~~d~eGR~---I~~~~-------------~~~~l~nvY~Pn~~~~~~r~~~K~ 120 (250)
T PRK13911 59 KK-GYSGVVTFTKKEPLSVSYGINI-EEHDKEGRV---ITCEF-------------ESFYLVNVYTPNSQQALSRLSYRM 120 (250)
T ss_pred cC-ccceEEEEEcCCchheEEcCCC-CcccccCCE---EEEEE-------------CCEEEEEEEecCCCCCCcchHHHH
Confidence 10 122 122222111000000000 000001121 22222 138899999854321 223444
Q ss_pred HHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChhhHhhhcCCCCCCCCCCCCCCCCCcCCCcccccCCCcchhhhhhhh
Q 008130 409 WQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFAR 488 (576)
Q Consensus 409 ~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~~~lL~~g~v~~~h~d~~~~~~~~~~~~~~l~h~~~L~Say~~~~~ 488 (576)
.-...+.+.|+++. .+.|+|+|||||..+.. +|...+.......+..++ .+.++..+
T Consensus 121 ~~~~~~~~~l~~l~--~~~~~Ii~GD~Nva~~~----------~D~~~~~~~~~~~gf~~~---------er~~f~~~-- 177 (250)
T PRK13911 121 SWEVEFKKFLKALE--LKKPVIVCGDLNVAHNE----------IDLENPKTNRKNAGFSDE---------ERGKFSEL-- 177 (250)
T ss_pred HHHHHHHHHHHhcc--cCCCEEEEccccCCCCh----------hhccChhhcCCCCCcCHH---------HHHHHHHH--
Confidence 44455566666552 34699999999988762 222111110111111110 12222222
Q ss_pred hccCCccccccccCCCCCCCCcccccc-------CccCcceeEEEeeCCCcc-eeeccccCChhhhccCCCCCCCCCCCC
Q 008130 489 IGVGLGMEHQRRRMDPTTNEPLFTHCT-------RDFIGTLDYIFYTADSLS-VESLLELLDEDSLRKDTALPSPEWSSD 560 (576)
Q Consensus 489 ~~~g~g~~~~~~~~~~~~~~p~fTn~t-------~~f~~~IDYIf~s~~~l~-v~~~l~~~~~~~~~~~~~lP~~~~pSD 560 (576)
...|+.|..|.+++.. ...||+|. .+.+.||||||+++.... +.... +. ....+||
T Consensus 178 --l~~gl~D~~R~~~p~~-~~~yTww~~~~~~~~~n~g~RIDyilvs~~~~~~~~~~~--i~-----------~~~~~SD 241 (250)
T PRK13911 178 --LNAGFIDTFRYFYPNK-EKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDAL--IY-----------KDILGSD 241 (250)
T ss_pred --HhcCCeehhhhhCCCC-CCCCccCCCcCCccccCCcceEEEEEEChHHhhhEEEEE--EC-----------CCCCCCC
Confidence 2347777777777642 34699874 356889999999987221 11111 10 1234799
Q ss_pred cccEEEEE
Q 008130 561 HIALLAEF 568 (576)
Q Consensus 561 H~pl~adf 568 (576)
|.||+++|
T Consensus 242 H~Pv~~~~ 249 (250)
T PRK13911 242 HCPVGLEL 249 (250)
T ss_pred cccEEEEe
Confidence 99999987
No 15
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.68 E-value=7e-16 Score=150.58 Aligned_cols=157 Identities=19% Similarity=0.260 Sum_probs=98.2
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEEe
Q 008130 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 329 (576)
Q Consensus 250 ~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~ 329 (576)
....|+++||||..... .+...|.+.|...|+.++|||||||||-...|. .+.. + +..|..++.
T Consensus 96 ~g~~~S~~~WnidgLdl-------------n~l~~RMrAv~H~i~l~sPdiiflQEV~p~~y~-~~~K-~-~s~y~i~~~ 159 (349)
T KOG2756|consen 96 QGSMFSLITWNIDGLDL-------------NNLSERMRAVCHYLALYSPDVIFLQEVIPPYYS-YLKK-R-SSNYEIITG 159 (349)
T ss_pred cccEEEEEEeecccccc-------------chHHHHHHHHHHHHHhcCCCEEEEeecCchhhH-HHHH-h-hhheeEEEe
Confidence 44578999999976321 124589999999999999999999999775443 3333 2 234555555
Q ss_pred ccCCeeeeecccc--cccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCCchhhH
Q 008130 330 RKTNEVEFNKAAQ--SLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVK 407 (576)
Q Consensus 330 ~k~~~i~f~~~~l--s~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vR 407 (576)
.+... |....+ ++...- ......+-|..|.++. +++..+. .|..++++|+||.+.....-.|
T Consensus 160 ~~~~~--~~~~~l~~s~~~Vk--s~~~i~F~NS~M~R~L-~I~Ev~v-----------~G~Kl~l~tsHLEStr~h~P~r 223 (349)
T KOG2756|consen 160 HEEGY--FTAIMLKKSRVKVK--SQEIIPFPNSKMMRNL-LIVEVNV-----------SGNKLCLMTSHLESTRGHAPER 223 (349)
T ss_pred cccee--eeeeeeehhhcCcc--ccceeccCcchhhhee-EEEEEee-----------cCceEEEEeccccCCCCCChHH
Confidence 55432 222221 111110 0011223333443332 3333332 3556999999998766566678
Q ss_pred HHHHHHHHHHHHHHhhc-CCCCEEEEecCCCC
Q 008130 408 LWQVHTLLKGLEKIAAS-ADIPMLVCGDFNSV 438 (576)
Q Consensus 408 l~Q~~~L~~~L~~~~~~-~~~pvIl~GDFNs~ 438 (576)
..|..+.++.+++..+. ++.-||+.||+|-.
T Consensus 224 ~~qF~~~~~k~~EaIe~lPnA~ViFGGD~Nlr 255 (349)
T KOG2756|consen 224 MNQFKMVLKKMQEAIESLPNATVIFGGDTNLR 255 (349)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEcCcccch
Confidence 89998888888776543 56679999999954
No 16
>PLN03158 methionine aminopeptidase; Provisional
Probab=99.68 E-value=2.1e-17 Score=176.01 Aligned_cols=71 Identities=31% Similarity=0.667 Sum_probs=56.1
Q ss_pred ccccCCCCCCceeecchhhccCCCCCceeecChHHhHHhHHHHHHHHHhhhcc----cccC-----------CCchhhhc
Q 008130 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASA----VNEN-----------GNEEEELF 127 (576)
Q Consensus 63 ~~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~~h~~~~~~----~~~~-----------~~~~~~~~ 127 (576)
.+|+ +|+++|+||||+|+|+|+++..||||||+|||++|++||.+|+.++.. ...+ |..-+++|
T Consensus 10 ~~c~-~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (396)
T PLN03158 10 LACA-RCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWSSHKSVHTKAKLSSIGQNSDAPAEGWLYCLKKGQARTSKL 88 (396)
T ss_pred cccc-CCCCcccccCccchhcCCCCCCceeECHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccccccCCC
Confidence 4584 999999999999999999877899999999999999999999875521 1111 11126778
Q ss_pred cCCCCCC
Q 008130 128 GRFNSTG 134 (576)
Q Consensus 128 ~~~~~~~ 134 (576)
+.|+++|
T Consensus 89 ~~~~~~~ 95 (396)
T PLN03158 89 PDFDWTG 95 (396)
T ss_pred CCCCCCc
Confidence 8887776
No 17
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.62 E-value=4.3e-15 Score=145.72 Aligned_cols=144 Identities=24% Similarity=0.281 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCC-eEEEeccCCe----eeeecccccccccccCccccccccc
Q 008130 285 RRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGY-QALYKRKTNE----VEFNKAAQSLTDAILPSAQKKNALN 359 (576)
Q Consensus 285 R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY-~~~~~~k~~~----i~f~~~~ls~~~~~~~~~~~~~~~~ 359 (576)
+.+.|++.|...+|||||||||....+.+.+...+...++ .......... ...+...+++.+.............
T Consensus 17 ~~~~i~~~i~~~~~Dii~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~~~~~ 96 (249)
T PF03372_consen 17 KRREIAQWIAELDPDIIALQEVRNDDLSELLEEQLRGYLGYYGSFWPGNSPPSDAGGYGVAILSRSPIFSSVSYVFSLFS 96 (249)
T ss_dssp HHHHHHHHHHHHT-SEEEEEEEESHHHHHHHHHHHHTCTTHEEEEEETSSSTTCSSSEEEEEEESSCCCEEEEEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEecchhhhhhhhhhhhcccccccccceeccccccccccCceEEEEEcccccccccccccccc
Confidence 3445999999999999999999876666666666765443 4444332110 0112222332221100000000000
Q ss_pred ccccCcEEE-------EEEEeeeecCCCCCCCCCCceEEEEeeecccCCCchhhHHHHHHHHHHHHHHHhhcC-CCCEEE
Q 008130 360 RLVKDNVAL-------IVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASA-DIPMLV 431 (576)
Q Consensus 360 r~~~d~val-------~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vRl~Q~~~L~~~L~~~~~~~-~~pvIl 431 (576)
.. ...+.. .+.+.. .++.|+|+|+|+.+ ....|..|...+++.+.++.... ..|+||
T Consensus 97 ~~-~~~~~~~~~~~~~~~~~~~-----------~~~~i~v~~~H~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 161 (249)
T PF03372_consen 97 KP-GIRIFRRSSKSKGIVPVSI-----------NGKPITVVNVHLPS---SNDERQEQWRELLARIQKIYADNPNEPVIV 161 (249)
T ss_dssp SS-TTCEEEEEEEEEEEEEEEE-----------ETEEEEEEEEETTS---HHHHHHHHHHHHHHHHHHHHHTSSCCEEEE
T ss_pred cc-ccccccccccccccccccc-----------cceEEEeeeccccc---cchhhhhhhhhhhhhhhhcccccccceEEE
Confidence 00 000100 011111 15679999999865 34556666778888887776433 237999
Q ss_pred EecCCCCCCChh
Q 008130 432 CGDFNSVPGSAP 443 (576)
Q Consensus 432 ~GDFNs~p~S~~ 443 (576)
|||||+.+++..
T Consensus 162 ~GDfN~~~~~~~ 173 (249)
T PF03372_consen 162 MGDFNSRPDSRD 173 (249)
T ss_dssp EEE-SS-BSSGG
T ss_pred EeecccCCccch
Confidence 999999988654
No 18
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.60 E-value=4.6e-14 Score=143.60 Aligned_cols=159 Identities=15% Similarity=0.201 Sum_probs=96.3
Q ss_pred CCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHH--HHHHHhh---cCCe
Q 008130 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEF--FAPELDK---HGYQ 325 (576)
Q Consensus 251 ~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~--l~~~L~~---~GY~ 325 (576)
...||||||||.... . ....|..|++.|++.|. ++|||++|||...+.... +.+.|.+ .+|.
T Consensus 15 ~~~l~I~SfNIr~fg--d---------~k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~~l~~ll~~Ln~~~~~~Y~ 81 (276)
T smart00476 15 AASLRICAFNIQSFG--D---------SKMSNATLMSIIVKILS--RYDIALVQEVRDSDLSAVPKLMDQLNSDSPNTYS 81 (276)
T ss_pred CCcEEEEEEECcccC--C---------ccccHHHHHHHHHHHhc--cCCEEEEEEeecchhHHHHHHHHHHhhcCCCCce
Confidence 357999999998421 1 23469999999999998 779999999976544331 2233332 3577
Q ss_pred EEEeccCC-----e---eeeecccccccccccCcc---cccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEe
Q 008130 326 ALYKRKTN-----E---VEFNKAAQSLTDAILPSA---QKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVAN 394 (576)
Q Consensus 326 ~~~~~k~~-----~---i~f~~~~ls~~~~~~~~~---~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~N 394 (576)
.+.....+ + ++|++..+++.+...-.. .+.+.+. |...++.++.+. ..++.|.++|
T Consensus 82 ~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f~d~~~~~~~~F~-----ReP~~~~F~~~~--------~~~~~F~li~ 148 (276)
T smart00476 82 YVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLYDDGCECGNDVFS-----REPFVVKFSSPS--------TAVKEFVIVP 148 (276)
T ss_pred EEecCCCCCCCCCEEEEEEEecceEEEcccceecCCCCCcccccc-----ccceEEEEEeCC--------CCCccEEEEE
Confidence 66544321 2 678877776554321100 1223333 345666676531 1235699999
Q ss_pred eecccCCCchhhHHHHHHHHHHHHHHH-hhcCCCCEEEEecCCCCCC
Q 008130 395 THVNVHQELKDVKLWQVHTLLKGLEKI-AASADIPMLVCGDFNSVPG 440 (576)
Q Consensus 395 THL~~~p~~~~vRl~Q~~~L~~~L~~~-~~~~~~pvIl~GDFNs~p~ 440 (576)
+|+... .+..++..|.+.+... .+-...|+||+||||+.++
T Consensus 149 ~H~~p~-----~~~~e~~aL~~v~~~~~~~~~~~~villGDFNa~~~ 190 (276)
T smart00476 149 LHTTPE-----AAVAEIDALYDVYLDVRQKWGTEDVIFMGDFNAGCS 190 (276)
T ss_pred ecCChH-----HHHHHHHHHHHHHHHHHHhhccCCEEEEccCCCCCC
Confidence 999542 2334444444432222 1124579999999999764
No 19
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.46 E-value=5.2e-13 Score=135.30 Aligned_cols=158 Identities=22% Similarity=0.123 Sum_probs=90.5
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEEe
Q 008130 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 329 (576)
Q Consensus 250 ~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~ 329 (576)
....++++++|++++.-. -..++..|...++|+|-+||.....- .. ...++ ..|.++..
T Consensus 85 ~~~~~~~l~~N~r~~n~~------------------~~k~Lsl~~~~~~D~v~~~E~~~~~~-~~-~~~l~-~~yP~~~~ 143 (309)
T COG3021 85 DQRLLWNLQKNVRFDNAS------------------VAKLLSLIQQLDADAVTTPEGVQLWT-AK-VGALA-AQYPAFIL 143 (309)
T ss_pred cchhhhhhhhhccccCcC------------------HHHHHHHHhhhCcchhhhHHHHHHhH-hH-HHHHH-HhCCceee
Confidence 455789999998875411 14566666777799999999954221 11 11233 34543322
Q ss_pred -ccCCeeeeecccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecc-cCCCchhhH
Q 008130 330 -RKTNEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVN-VHQELKDVK 407 (576)
Q Consensus 330 -~k~~~i~f~~~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~-~~p~~~~vR 407 (576)
.... -.|+..++++...+. .. .....-+.-++..+....+ ..|+.+.|++.|.. +.-..+..|
T Consensus 144 ~~~~~-~~~~~a~~sr~~~~~-~~-~~e~~~~~pk~~~~t~~~~------------~~g~~l~v~~lh~~~~~~~~~~~~ 208 (309)
T COG3021 144 CQHPT-GVFTLAILSRRPCCP-LT-EAEPWLRLPKSALATAYPL------------PDGTELTVVALHAVNFPVGTDPQR 208 (309)
T ss_pred cCCCC-Ceeeeeecccccccc-cc-ccCccccCCccceeEEEEc------------CCCCEEEEEeeccccccCCccHHH
Confidence 2221 246666666543211 11 1111111112333322221 24778999999996 332333444
Q ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChhhHhhh
Q 008130 408 LWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLA 448 (576)
Q Consensus 408 l~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~~~lL~ 448 (576)
.|...+.+.|... +.|+|++||||++|.|..++.+.
T Consensus 209 -~ql~~l~~~i~~~----~gpvIlaGDfNa~pWS~~~~R~~ 244 (309)
T COG3021 209 -AQLLELGDQIAGH----SGPVILAGDFNAPPWSRTAKRMA 244 (309)
T ss_pred -HHHHHHHHHHHcC----CCCeEEeecCCCcchhHHHHHHH
Confidence 7777776666654 36999999999999999876543
No 20
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.42 E-value=4.2e-12 Score=127.62 Aligned_cols=54 Identities=17% Similarity=0.120 Sum_probs=40.8
Q ss_pred EEEEeeecccCCCchhhHHHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChhhHhh
Q 008130 390 LCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALL 447 (576)
Q Consensus 390 l~V~NTHL~~~p~~~~vRl~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~~~lL 447 (576)
+.+++||+.+... ..|..|++.+.+.... ...+.|+++|||||..|+|..+.++
T Consensus 152 ~~ffstH~~a~~~--~da~aiV~~I~~~f~~--~~~~~pw~I~GDFNr~P~sl~~~l~ 205 (271)
T PRK15251 152 DVFFSIHALANGG--TDAGAIVRAVHNFFRP--NMRHINWMIAGDFNRSPDRLESTLD 205 (271)
T ss_pred eEEEEeeecCCCC--ccHHHHHHHHHHHHhh--ccCCCCEEEeccCCCCCcchhhhhc
Confidence 6899999977642 3378888888877751 1234799999999999999866554
No 21
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.1e-13 Score=133.84 Aligned_cols=68 Identities=31% Similarity=0.755 Sum_probs=56.8
Q ss_pred cccc-CCCCCCceeecchhhccCCCCCceeecChHHhHHhHHHHHHHHHhhhcccccCCCchhhhccCCCCCCC
Q 008130 63 AVCS-VHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNSTGS 135 (576)
Q Consensus 63 ~~c~-~~~~~~~~l~c~~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (576)
++|. .+|+++|+||||+|+|+|++ .+|||+|+|||.+|..||++|..+.. ....| ++++++.|+++|+
T Consensus 7 ~~c~~~~c~~~a~l~Cp~c~~~~i~--~~~fc~q~cf~~~w~~hK~~h~~~~~-~~~~g--~~~p~p~~~~~g~ 75 (369)
T KOG2738|consen 7 ISCEGLQCGSEASLQCPTCLKLGIK--SAYFCAQECFKNSWLSHKKLHRKALR-IRKEG--QYNPWPKFRFTGP 75 (369)
T ss_pred ceeeccccCChhhccCchhhhcCCC--cccccCchhhhcchhhhhhhcccchh-hhhhc--cCCCCccccccCC
Confidence 5677 99999999999999999998 48999999999999999999986632 22222 3779999999874
No 22
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=99.14 E-value=7.8e-10 Score=122.15 Aligned_cols=267 Identities=18% Similarity=0.239 Sum_probs=147.9
Q ss_pred CCCcEEEEEeccCCCcCCCCCC-------CCCC--CccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhH--------H
Q 008130 250 STGTFSVLSYNILSDVYATSES-------YSYC--PSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHF--------E 312 (576)
Q Consensus 250 ~~~~~rVmSyNIl~~~ya~~~~-------y~y~--p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~--------~ 312 (576)
-.+.|||.||||+...- ..+. |..| +....+.+..+..|...|...+||||+|-|++...| .
T Consensus 460 v~G~LkiasfNVlNyf~-~~~~~g~~~~~~~d~rga~~~~e~~~Q~~k~v~ai~~ldaDV~GL~Eien~~~~~~s~~ai~ 538 (798)
T COG2374 460 VGGSLKIASFNVLNYFN-KLSGDGGGASTFSDCRGANTTEEFARQRAKIVTAILTLDADVLGLMEIENNGYGTDSGDAIA 538 (798)
T ss_pred cCceeeeeeeehhhhhc-cCCCCCCCccccccccCccchhHHHHHHHHHHHHHhhcchhhheeeeeeccCCCCCcHHHHH
Confidence 45789999999998431 1121 2222 112222334456799999999999999999987633 2
Q ss_pred HHHHHHHhhcC----CeEEEeccCCe---------eeeecccccccccccCcc-cccccccccc--cCcEEEEEEEeeee
Q 008130 313 EFFAPELDKHG----YQALYKRKTNE---------VEFNKAAQSLTDAILPSA-QKKNALNRLV--KDNVALIVVLEAKF 376 (576)
Q Consensus 313 ~~l~~~L~~~G----Y~~~~~~k~~~---------i~f~~~~ls~~~~~~~~~-~~~~~~~r~~--~d~val~~~Le~~~ 376 (576)
+.+...-++.| |..+....... +.|...++++........ .......+.. ..+--++..++.
T Consensus 539 ~lV~~lna~~G~~~~y~~v~p~~~~~lgtD~I~vg~iY~~~~V~~~g~~~~~~~~a~~~v~~~~~~n~R~~laqtF~~-- 616 (798)
T COG2374 539 QLVNALNAKAGAGTRYAFVAPGRNGGLGTDAIRVGFIYKPSAVSLVGKAAIVDNDAFLGVGEIDDNNARPPLAQTFQD-- 616 (798)
T ss_pred HHHHHHHhhcCCCceEEEEecCccCCcCCCceeEEEEeccceEEecccccccccccccccccccccccCcchhhhhhh--
Confidence 33222222332 44444433211 456555554433211000 0000000110 001111111221
Q ss_pred cCCCCCCCCCCceEEEEeeecccC----CC----------chhhHHHHHHHHHHHHHHH-hhcCCCCEEEEecCCCCCCC
Q 008130 377 SNQGADTPGKRQLLCVANTHVNVH----QE----------LKDVKLWQVHTLLKGLEKI-AASADIPMLVCGDFNSVPGS 441 (576)
Q Consensus 377 ~~~~~~~~~~g~~l~V~NTHL~~~----p~----------~~~vRl~Q~~~L~~~L~~~-~~~~~~pvIl~GDFNs~p~S 441 (576)
...+..|.|+.-||.+. |- ....|.+|+.+|..+|+.. ....+.+++|.||||+-.-+
T Consensus 617 -------~~~~ekfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~~~~~~~d~~~viLGD~N~y~~e 689 (798)
T COG2374 617 -------LSGGEKFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLATNPTGKADADIVILGDFNDYAFE 689 (798)
T ss_pred -------ccCCcEEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhhCcccccCCCEEEEeccchhhhc
Confidence 12345589999999653 31 3468999999999999973 33457899999999999888
Q ss_pred hhhHhhhc-CCCCCCCCCCCCCCCCCcCCCcccccCCCcchhhhhhhhhccCCccccccccCCCCCCCCccccccCccCc
Q 008130 442 APHALLAM-GKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIG 520 (576)
Q Consensus 442 ~~~~lL~~-g~v~~~h~d~~~~~~~~~~~~~~l~h~~~L~Say~~~~~~~~g~g~~~~~~~~~~~~~~p~fTn~t~~f~~ 520 (576)
.+++.|.. |.+... .+ + ......|++...+..+
T Consensus 690 dpI~~l~~aGy~~l~------------------------~~----~------------------~~~~~~YSY~f~G~~g 723 (798)
T COG2374 690 DPIQALEGAGYMNLA------------------------AR----F------------------HDAGDRYSYVFNGQSG 723 (798)
T ss_pred cHHHHHhhcCchhhh------------------------hh----c------------------cCCCCceEEEECCccc
Confidence 88888876 422100 00 0 0123467777788899
Q ss_pred ceeEEEeeCCCcce-----eeccccCChhhhccCCCC----------CCCCCCCCcccEEEEEEEec
Q 008130 521 TLDYIFYTADSLSV-----ESLLELLDEDSLRKDTAL----------PSPEWSSDHIALLAEFRCKP 572 (576)
Q Consensus 521 ~IDYIf~s~~~l~v-----~~~l~~~~~~~~~~~~~l----------P~~~~pSDH~pl~adf~~k~ 572 (576)
.|||||.+.+.... +..+---++.-+.-+..| ++...+|||=||+..|.|..
T Consensus 724 tLDhaLas~sl~~~v~~a~ewHINAdE~~~ldYn~~Fk~q~~~~~~~~~~fR~SDHDPvvvglnL~~ 790 (798)
T COG2374 724 TLDHALASASLAAQVSGATEWHINADEPDALDYNLEFKGQNVSLYKTTNPFRASDHDPVVVGLNLLG 790 (798)
T ss_pred hHhhhhhhhhhhhhccCceeeeecccccchhhhhhhhccccccccccCCccccCCCCCeEEEEEecc
Confidence 99999998662211 111100000000011111 46778999999999999854
No 23
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=99.02 E-value=4.6e-09 Score=109.47 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=51.5
Q ss_pred cCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCCchhhHHHHHHHHHHHHHHHhh-----cCCCCEEEEecCCC
Q 008130 363 KDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA-----SADIPMLVCGDFNS 437 (576)
Q Consensus 363 ~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vRl~Q~~~L~~~L~~~~~-----~~~~pvIl~GDFNs 437 (576)
.++.|..+.++. .+..++++|+||..+......|..|...+++.+.-... .....+|++||||-
T Consensus 124 ~nKG~v~i~~~~-----------~~~~~~fv~~HL~a~~~~~~~R~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNy 192 (310)
T smart00128 124 GNKGAVAVRFKL-----------SDTSFCFVNSHLAAGASNVEQRNQDYKTILRALSFPERAELSQFDHDVVFWFGDLNF 192 (310)
T ss_pred ecCceEEEEEEE-----------cCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCCCCccccccccceEEEecCcce
Confidence 445566666654 35679999999988877677899999888776631110 12357999999997
Q ss_pred CCCC----hhhHhhhcC
Q 008130 438 VPGS----APHALLAMG 450 (576)
Q Consensus 438 ~p~S----~~~~lL~~g 450 (576)
.-+. .+-+++..+
T Consensus 193 Ri~~~~~~~v~~~i~~~ 209 (310)
T smart00128 193 RLDSPSYEEVRRKISKK 209 (310)
T ss_pred eecCCCHHHHHHHHhhC
Confidence 6543 233555544
No 24
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=2.6e-05 Score=88.52 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=42.8
Q ss_pred CceEEEEeeecccCCCchhhHHHHHHHHHHHHHHHhh---cCCCCEEEEecCCC---CCCChhhHhhhcCCC
Q 008130 387 RQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA---SADIPMLVCGDFNS---VPGSAPHALLAMGKV 452 (576)
Q Consensus 387 g~~l~V~NTHL~~~p~~~~vRl~Q~~~L~~~L~~~~~---~~~~pvIl~GDFNs---~p~S~~~~lL~~g~v 452 (576)
...+|+++.||.++-..-+.|-.-...+.+.|.=-.. .....|+.|||||- .++..|.+.+..+.+
T Consensus 672 ~TsfCFv~SHlAAG~snv~ERn~DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~d~ 743 (1080)
T KOG0566|consen 672 ATSFCFVCSHLAAGQSNVEERNEDYKTIARKLRFPRGRMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQDL 743 (1080)
T ss_pred cccEEEEecccccccchHhhhhhhHHHHHHhccccCCccccCCceEEEecccceeecCCHHHHHHHHHhccH
Confidence 4469999999987766555565555555555431100 12346999999995 456667777776654
No 25
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=97.74 E-value=4.9e-05 Score=66.97 Aligned_cols=43 Identities=21% Similarity=0.211 Sum_probs=21.7
Q ss_pred ccccccCccCcceeEEEeeCCCcceeeccccCChhhhccCCCCCCCCCCCCcccEE
Q 008130 510 LFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALL 565 (576)
Q Consensus 510 ~fTn~t~~f~~~IDYIf~s~~~l~v~~~l~~~~~~~~~~~~~lP~~~~pSDH~pl~ 565 (576)
.+|.+...-..+||+||.+...+.. ..... ......|||.||+
T Consensus 77 ~~T~~~~~~~s~iD~~~~s~~~~~~-~~~~~------------~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 77 PPTFISNSHGSRIDLILTSDNLLSW-CVWVI------------SSDDSGSDHCPIT 119 (119)
T ss_dssp --SEEECCCEE--EEEEEECCGCCC-EEEEE------------ETTSSSSSB--EE
T ss_pred CCcccCCCCCceEEEEEECChHHhc-CcEEE------------eCCCCCCCccCCC
Confidence 4666655558999999999873322 11100 0123579999985
No 26
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=97.15 E-value=0.0019 Score=68.58 Aligned_cols=51 Identities=12% Similarity=0.224 Sum_probs=36.2
Q ss_pred ceEEEEeeecccCCCchhhHHHHHHHHHHHHHHHhh---cCCCCEEEEecCCCC
Q 008130 388 QLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA---SADIPMLVCGDFNSV 438 (576)
Q Consensus 388 ~~l~V~NTHL~~~p~~~~vRl~Q~~~L~~~L~~~~~---~~~~pvIl~GDFNs~ 438 (576)
..+|++|.||..+-...+.|....+.+.+.|.--.. .....++++||||-.
T Consensus 165 t~~cFv~shlaag~~N~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNyR 218 (460)
T COG5411 165 TSFCFVNSHLAAGVNNIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNYR 218 (460)
T ss_pred CCcEEEecchhcccccHHHHHHHHHHHHHheecCCCceecccceEEEecccCce
Confidence 459999999988877777887777777766642210 122359999999943
No 27
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=96.83 E-value=0.001 Score=46.68 Aligned_cols=34 Identities=26% Similarity=0.617 Sum_probs=28.1
Q ss_pred CCCCCCceeecchhhccCCCCCceeecChHHhHHhHHHHHH
Q 008130 67 VHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRV 107 (576)
Q Consensus 67 ~~~~~~~~l~c~~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~ 107 (576)
..|++++...|+.|. ..+|||.+|.+..|..||.
T Consensus 2 ~~C~~~~~~~C~~C~-------~~~YCs~~Cq~~~w~~Hk~ 35 (37)
T PF01753_consen 2 AVCGKPALKRCSRCK-------SVYYCSEECQRADWPYHKF 35 (37)
T ss_dssp TTTSSCSSEEETTTS-------SSEESSHHHHHHHHHHHCC
T ss_pred cCCCCCcCCcCCCCC-------CEEecCHHHHHHHHHHHhh
Confidence 568887777899882 2689999999999999974
No 28
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=96.51 E-value=0.0071 Score=67.23 Aligned_cols=68 Identities=10% Similarity=0.159 Sum_probs=41.5
Q ss_pred ccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCCch--hhHHHHHHHHHHHHHH--Hhh-------cCCCCEE
Q 008130 362 VKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELK--DVKLWQVHTLLKGLEK--IAA-------SADIPML 430 (576)
Q Consensus 362 ~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~~~--~vRl~Q~~~L~~~L~~--~~~-------~~~~pvI 430 (576)
+.++.|+.+.+.. .+..|+++|+||.++.... ..|..+...|++.+.= ... ...-.+|
T Consensus 405 ~GNKGAVaIr~~l-----------~~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vF 473 (621)
T PLN03191 405 MGNKGSVSISMSL-----------FQSRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIF 473 (621)
T ss_pred cccceeEEEEEEE-----------cCcEEEEEEeccccccccchHHHHHHHHHHHHhccccCcccccCCCccccccceEE
Confidence 4455666666654 3567999999998765432 3466667766654320 000 0123699
Q ss_pred EEecCCCCCC
Q 008130 431 VCGDFNSVPG 440 (576)
Q Consensus 431 l~GDFNs~p~ 440 (576)
++||||-.-+
T Consensus 474 WlGDLNYRId 483 (621)
T PLN03191 474 WFGDLNYRLN 483 (621)
T ss_pred EecCcccccc
Confidence 9999996543
No 29
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=96.22 E-value=0.0044 Score=64.41 Aligned_cols=83 Identities=20% Similarity=0.158 Sum_probs=63.1
Q ss_pred cCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCCchhhHHHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCCh
Q 008130 363 KDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSA 442 (576)
Q Consensus 363 ~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vRl~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~ 442 (576)
+++++.++.++. +.. + ..-.+++++||++|+|.....|+.|...+++.+.+...- ..+.++|||||..|.+.
T Consensus 120 t~~dGc~if~k~-~~~-----~-sk~~li~~~~~~f~~p~~~~er~r~t~~~lnri~e~~~~-~w~~l~~~l~n~e~gd~ 191 (378)
T COG5239 120 TKVDGCAIFLKR-FID-----S-SKLGLILAVTHLFWHPYGYYERFRQTYILLNRIGEKDNI-AWVCLFVGLFNKEPGDT 191 (378)
T ss_pred cccceEEEEEEe-ccc-----c-chhhhhhhhhHhhcccceeehhhhHHHHHHHHHhhhhhc-chhheeeeeccCCCCCc
Confidence 467787777776 211 1 112588999999999999999999999999998876532 25789999999999998
Q ss_pred hhHhhhcCCCC
Q 008130 443 PHALLAMGKVE 453 (576)
Q Consensus 443 ~~~lL~~g~v~ 453 (576)
+|-.++....+
T Consensus 192 ~~va~Th~~w~ 202 (378)
T COG5239 192 PYVANTHLPWD 202 (378)
T ss_pred eeEEecccccc
Confidence 88776654443
No 30
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=94.25 E-value=0.16 Score=51.84 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=39.9
Q ss_pred CCceEEEEeeecccCCC-----------chhhHHHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChh-hHhhh
Q 008130 386 KRQLLCVANTHVNVHQE-----------LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAP-HALLA 448 (576)
Q Consensus 386 ~g~~l~V~NTHL~~~p~-----------~~~vRl~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~-~~lL~ 448 (576)
.+..|.++|+||+.+.. +...|..-+..+++.+..... ...|+++.||||-.-+... .+.+.
T Consensus 78 ~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~~-~~~~lF~fGDfNyRld~~~~~e~L~ 151 (356)
T PTZ00312 78 GTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFIS-PSDPLFIFGDFNVRLDGHNLLEWLK 151 (356)
T ss_pred CCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhccC-CCCcEEEeccceeeeccccHHHHhc
Confidence 35679999999976543 233455555555555554432 4579999999998766443 34444
No 31
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=93.96 E-value=0.53 Score=49.58 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=38.9
Q ss_pred cccccccCCCCCCCCccccc-------cCccCcceeEEEeeCCCcceeeccccCChhhhccCCCCCCCCCCCCcccEEEE
Q 008130 495 MEHQRRRMDPTTNEPLFTHC-------TRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAE 567 (576)
Q Consensus 495 ~~~~~~~~~~~~~~p~fTn~-------t~~f~~~IDYIf~s~~~l~v~~~l~~~~~~~~~~~~~lP~~~~pSDH~pl~ad 567 (576)
++|+.+.+.+. +...||.| .++-+.++||+.++...+... ++..-.+.+..+|||-|+.+.
T Consensus 265 ~iDt~r~~~~~-~~~~~t~Wk~~~~~r~~~~~~r~dy~~Vsk~~~n~~-----------r~~~Ic~r~~~gsdh~pi~~~ 332 (335)
T KOG1294|consen 265 LIDTYRELHKD-QKKAYTFWKYMPNGRQRGHGERCDYILVSKPGPNNG-----------RRFYICSRPIHGSDHCPITLE 332 (335)
T ss_pred ceeehhhhcCC-ccccccchhhccccccCCCCCceeEEEecCcCCCCC-----------ceeeeecCccCCCCCCCeeee
Confidence 45555555432 22267776 357789999999997633211 111112233679999999998
Q ss_pred EE
Q 008130 568 FR 569 (576)
Q Consensus 568 f~ 569 (576)
|.
T Consensus 333 ~~ 334 (335)
T KOG1294|consen 333 FF 334 (335)
T ss_pred ec
Confidence 85
No 32
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=91.67 E-value=0.23 Score=50.66 Aligned_cols=61 Identities=21% Similarity=0.220 Sum_probs=45.5
Q ss_pred CceEEEEeeecccCC-----------CchhhHHHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChh-hHhhh
Q 008130 387 RQLLCVANTHVNVHQ-----------ELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAP-HALLA 448 (576)
Q Consensus 387 g~~l~V~NTHL~~~p-----------~~~~vRl~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~-~~lL~ 448 (576)
++.+-++|.||+.+- .+...|..|+.+++++|....- .+..++|.||||...+|.- .+.|.
T Consensus 168 ~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~~~-~~~~~fVfGdfNfrLds~s~ln~l~ 240 (391)
T KOG1976|consen 168 GKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEEGL-RNDAIFVFGDFNFRLDSTSLLNYLA 240 (391)
T ss_pred CceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhhcc-CceEEEEecccccccchHHHHHHHh
Confidence 667999999995321 1456788999999999876543 3458999999999988764 45554
No 33
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=90.25 E-value=0.14 Score=51.97 Aligned_cols=40 Identities=20% Similarity=0.468 Sum_probs=30.9
Q ss_pred ccccCCCCCC-ceeecchhhccCCCCCceeecChHHhHHhHHHHHHHHH
Q 008130 63 AVCSVHPSEQ-ATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHD 110 (576)
Q Consensus 63 ~~c~~~~~~~-~~l~c~~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~~h~ 110 (576)
..| .-||.+ |+-+|-.|.. -.||+|+|-|-.|-.||++-+
T Consensus 320 ~fC-stCG~~ga~KrCs~CKa-------v~YCdqeCQk~hWf~HKK~C~ 360 (396)
T KOG1710|consen 320 QFC-STCGHPGAKKRCSQCKA-------VAYCDQECQKFHWFIHKKVCS 360 (396)
T ss_pred ccc-cccCCCCccchhhhhHH-------HHHHHHHHHHhhhHHHHHHHH
Confidence 456 456654 5688998863 348999999999999999775
No 34
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=82.26 E-value=1.2 Score=34.62 Aligned_cols=33 Identities=27% Similarity=0.654 Sum_probs=24.7
Q ss_pred ecchhhccCCCCCceeecChHHhHHhHHHHHHHHH
Q 008130 76 QCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHD 110 (576)
Q Consensus 76 ~c~~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~~h~ 110 (576)
.||.|- .-|+ ...-|||++|=+..++.+|+..+
T Consensus 5 HC~~CG-~~Ip-~~~~fCS~~C~~~~~k~qk~~~~ 37 (59)
T PF09889_consen 5 HCPVCG-KPIP-PDESFCSPKCREEYRKRQKRMRK 37 (59)
T ss_pred cCCcCC-CcCC-cchhhhCHHHHHHHHHHHHHHHH
Confidence 477774 3343 24678999999999999998774
No 35
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=71.47 E-value=3.4 Score=27.60 Aligned_cols=28 Identities=25% Similarity=0.632 Sum_probs=19.5
Q ss_pred ccccCCCCCCceeecchhhccCCCCCceeecChHHhH
Q 008130 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFS 99 (576)
Q Consensus 63 ~~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~q~Cfk 99 (576)
..| .-|+..+.-.||.|. .-+||-+|||
T Consensus 3 ~~C-~vC~~~~kY~Cp~C~--------~~~CSl~C~k 30 (30)
T PF04438_consen 3 KLC-SVCGNPAKYRCPRCG--------ARYCSLACYK 30 (30)
T ss_dssp EEE-TSSSSEESEE-TTT----------EESSHHHHH
T ss_pred CCC-ccCcCCCEEECCCcC--------CceeCcEeEC
Confidence 456 348888889999663 3399999997
No 36
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=59.99 E-value=5.5 Score=31.35 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=18.7
Q ss_pred ceeecchhhccCC---CCCceeecChHHhHH
Q 008130 73 ATLQCLGCVKAKI---PVAKSYHCSPKCFSD 100 (576)
Q Consensus 73 ~~l~c~~c~~~~~---~~~~~~fc~q~Cfk~ 100 (576)
.+..||+|.|.-. .....=|||+-|=.-
T Consensus 5 ~~v~CP~C~k~~~w~~~~~~rPFCS~RCk~I 35 (62)
T PRK00418 5 ITVNCPTCGKPVEWGEISPFRPFCSKRCQLI 35 (62)
T ss_pred ccccCCCCCCcccccCCCCcCCcccHHHHhh
Confidence 3578999998742 111344999999653
No 37
>PRK01343 zinc-binding protein; Provisional
Probab=57.37 E-value=5.7 Score=30.72 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=18.4
Q ss_pred eeecchhhccCCCCCceeecChHHhHH
Q 008130 74 TLQCLGCVKAKIPVAKSYHCSPKCFSD 100 (576)
Q Consensus 74 ~l~c~~c~~~~~~~~~~~fc~q~Cfk~ 100 (576)
+..||+|.|.-.. ...-|||+-|=.-
T Consensus 9 ~~~CP~C~k~~~~-~~rPFCS~RC~~i 34 (57)
T PRK01343 9 TRPCPECGKPSTR-EAYPFCSERCRDI 34 (57)
T ss_pred CCcCCCCCCcCcC-CCCcccCHHHhhh
Confidence 3678888887552 3456999999653
No 38
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=56.14 E-value=3.4 Score=45.56 Aligned_cols=39 Identities=26% Similarity=0.543 Sum_probs=29.5
Q ss_pred ccCCCCCCceeecchhhccCCCCCceeecChHHhHHhHHHHHHHHHhhh
Q 008130 65 CSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAA 113 (576)
Q Consensus 65 c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~~h~~~~ 113 (576)
| .+|.++|-+-|= .. .-|||-+|-...|+.|++.-.+.+
T Consensus 530 C-~nC~~EAiy~CC--------WN-TSYCsveCQQ~HW~~H~ksCrrk~ 568 (588)
T KOG3612|consen 530 C-YNCLDEAIYHCC--------WN-TSYCSVECQQGHWPEHRKSCRRKK 568 (588)
T ss_pred H-HhhhHHHHHHhh--------cc-ccccCcchhhccchhHhhhhcccC
Confidence 6 778888776654 22 336999999999999998776544
No 39
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=54.82 E-value=5.1 Score=31.04 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=13.3
Q ss_pred eeecchhhccCCC---CCceeecChHHhH
Q 008130 74 TLQCLGCVKAKIP---VAKSYHCSPKCFS 99 (576)
Q Consensus 74 ~l~c~~c~~~~~~---~~~~~fc~q~Cfk 99 (576)
+..||+|.|.-.. -...=|||+-|=.
T Consensus 2 ~v~CP~C~k~~~~~~~n~~rPFCS~RCk~ 30 (57)
T PF03884_consen 2 TVKCPICGKPVEWSPENPFRPFCSERCKL 30 (57)
T ss_dssp EEE-TTT--EEE-SSSSS--SSSSHHHHH
T ss_pred cccCCCCCCeecccCCCCcCCcccHhhcc
Confidence 4578888875432 1234499999943
No 40
>COG3350 Uncharacterized conserved protein [Function unknown]
Probab=45.70 E-value=12 Score=28.43 Aligned_cols=11 Identities=36% Similarity=0.881 Sum_probs=9.0
Q ss_pred eeecChHHhHH
Q 008130 90 SYHCSPKCFSD 100 (576)
Q Consensus 90 ~~fc~q~Cfk~ 100 (576)
=|||||+|...
T Consensus 28 YYFcse~~~~~ 38 (53)
T COG3350 28 YYFCSEECKEK 38 (53)
T ss_pred EEEeCHHHHHH
Confidence 68999999654
No 41
>PF02069 Metallothio_Pro: Prokaryotic metallothionein; InterPro: IPR000518 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium and nickel. They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ]. An empirical classification into three classes was proposed by Kojima [], with class III MTs including atypical polypeptides composed of gamma-glutamylcysteinyl units. Class I and class II MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. The MT superfamily is subdivided into families, subfamilies, subgroups, and isolated isoforms and alleles. The metallothionein superfamily comprises all polypeptides that resemble equine renal metallothionein in several respects [], e.g., low molecular weight; high metal content; amino acid composition with high Cys and low aromatic residue content; unique sequence with characteristic distribution of cysteines, and spectroscopic manifestations indicative of metal thiolate clusters. A MT family subsumes MTs that share particular sequence-specific features and are thought to be evolutionarily related. Fifteen MT families have been characterised, each family being identified by its number and its taxonomic range. Family 14 consists of prokaryota MTs. Its members are recognised by the sequence pattern K-C-A-C-x(2)-C-L-C.The taxonomic range of the members extends to cyanobacteria. Known characteristics are: 53 to 56 AAs; 9 conserved Cys; one conserved tyrosine residue; one conserved histidine residue; contain other unusual residues. ; GO: 0046872 metal ion binding; PDB: 1JJD_A.
Probab=45.00 E-value=12 Score=28.49 Aligned_cols=19 Identities=26% Similarity=0.530 Sum_probs=14.3
Q ss_pred ccCCCCCceeecChHHhHH
Q 008130 82 KAKIPVAKSYHCSPKCFSD 100 (576)
Q Consensus 82 ~~~~~~~~~~fc~q~Cfk~ 100 (576)
+..|.....||||++|-..
T Consensus 20 ~~Ai~~dGk~YCS~aCA~g 38 (52)
T PF02069_consen 20 EEAIQKDGKYYCSEACANG 38 (52)
T ss_dssp TTSEESSS-EESSHHHHHT
T ss_pred hHhHHhCCEeeecHHHhcc
Confidence 5666677899999999764
No 42
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.48 E-value=19 Score=28.38 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=17.4
Q ss_pred eeecchhhccCCC---CCceeecChHHhH
Q 008130 74 TLQCLGCVKAKIP---VAKSYHCSPKCFS 99 (576)
Q Consensus 74 ~l~c~~c~~~~~~---~~~~~fc~q~Cfk 99 (576)
+..||+|-|.-.- -...-|||+-|--
T Consensus 7 ~v~CP~Cgkpv~w~~~s~frPFCSkRCkl 35 (65)
T COG3024 7 TVPCPTCGKPVVWGEESPFRPFCSKRCKL 35 (65)
T ss_pred cccCCCCCCcccccccCCcCcchhHhhhh
Confidence 4678888876441 1345699999953
No 43
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=31.20 E-value=41 Score=33.99 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccchhhH
Q 008130 283 AYRRQNLLREIIGYRADIVCLQEVQNDHF 311 (576)
Q Consensus 283 ~~R~~~I~~eI~~~~aDIIcLQEV~~~~~ 311 (576)
..|...|++.-....+.||||||.+...|
T Consensus 99 h~r~kaiieaaa~agvniiclqeawtmpf 127 (387)
T KOG0808|consen 99 HDRLKAIIEAAAVAGVNIICLQEAWTMPF 127 (387)
T ss_pred HHHHHHHHHHHHhcCccEEEeehhhcCch
Confidence 45677788887888999999999976544
No 44
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=27.66 E-value=1.2e+02 Score=31.59 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=25.8
Q ss_pred CCceEEEEeeecccCCCchhhHH-HHHHHHHHHHHHHhhcC--CCCEEEEecCCCCC
Q 008130 386 KRQLLCVANTHVNVHQELKDVKL-WQVHTLLKGLEKIAASA--DIPMLVCGDFNSVP 439 (576)
Q Consensus 386 ~g~~l~V~NTHL~~~p~~~~vRl-~Q~~~L~~~L~~~~~~~--~~pvIl~GDFNs~p 439 (576)
....+++..+||. +.+. ..++.+.+..+....+. ..-+|+||+|.+.|
T Consensus 27 ~~~~VilSDV~LD------~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p 77 (291)
T PTZ00235 27 RHNWIIMHDVYLD------SPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLK 77 (291)
T ss_pred ceEEEEEEeeccC------CHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCc
Confidence 3445666677773 2233 23344444443211112 33479999999998
No 45
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.98 E-value=97 Score=28.24 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=30.6
Q ss_pred CceEEEEeeecccCCCchhh-HHHHHHHHHHHHHHHhhc-CC---------CCEEEEecCCCCCCC
Q 008130 387 RQLLCVANTHVNVHQELKDV-KLWQVHTLLKGLEKIAAS-AD---------IPMLVCGDFNSVPGS 441 (576)
Q Consensus 387 g~~l~V~NTHL~~~p~~~~v-Rl~Q~~~L~~~L~~~~~~-~~---------~pvIl~GDFNs~p~S 441 (576)
+..+++++.|+..+-..... |..-...+.+.+.-.... .. .-||..||+|....+
T Consensus 58 ~~~~~~v~~hl~~~~~~~~~~r~~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~ 123 (145)
T KOG0565|consen 58 QTSFCFVISHLTSGVHKVYERRNEDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSG 123 (145)
T ss_pred CceEEEEEecccccchhhHHHhhccHHHHHhhccccccCcccccccccccccEEEEecceeeeecC
Confidence 44699999999776544444 333333333322211100 11 237899999987654
No 46
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.26 E-value=16 Score=32.65 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=14.9
Q ss_pred ccccCCCCCCceeecchhhc
Q 008130 63 AVCSVHPSEQATLQCLGCVK 82 (576)
Q Consensus 63 ~~c~~~~~~~~~l~c~~c~~ 82 (576)
+-| .+||..+-+|||+|-.
T Consensus 29 afc-skcgeati~qcp~csa 47 (160)
T COG4306 29 AFC-SKCGEATITQCPICSA 47 (160)
T ss_pred HHH-hhhchHHHhcCCccCC
Confidence 347 6899887799999854
No 47
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=25.90 E-value=33 Score=31.46 Aligned_cols=29 Identities=34% Similarity=0.752 Sum_probs=21.1
Q ss_pred ccccCCCCCC-ceeecchhhccCCCCCceeecChHHhHH
Q 008130 63 AVCSVHPSEQ-ATLQCLGCVKAKIPVAKSYHCSPKCFSD 100 (576)
Q Consensus 63 ~~c~~~~~~~-~~l~c~~c~~~~~~~~~~~fc~q~Cfk~ 100 (576)
.+| .-|.+. .+-+||.|. +| |||--|||.
T Consensus 6 ~tC-~ic~e~~~KYKCpkC~---vP-----YCSl~CfKi 35 (157)
T KOG2857|consen 6 TTC-VICLESEIKYKCPKCS---VP-----YCSLPCFKI 35 (157)
T ss_pred eee-hhhhcchhhccCCCCC---Cc-----cccchhhhh
Confidence 457 677664 378899774 45 999999873
No 48
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=25.65 E-value=29 Score=26.92 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=19.1
Q ss_pred eecchhhccCCCCCceeecChHHhHHhHHHHH
Q 008130 75 LQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHR 106 (576)
Q Consensus 75 l~c~~c~~~~~~~~~~~fc~q~Cfk~~w~~hk 106 (576)
-.|+.|-|.-=+ .--|||.+|-+--=++.|
T Consensus 9 ~HC~VCg~aIp~--de~~CSe~C~eil~ker~ 38 (64)
T COG4068 9 RHCVVCGKAIPP--DEQVCSEECGEILNKERK 38 (64)
T ss_pred ccccccCCcCCC--ccchHHHHHHHHHHHHHH
Confidence 357777665433 567999999854433333
No 49
>PF04181 RPAP2_Rtr1: Rtr1/RPAP2 family; InterPro: IPR007308 This entry represents a domain found in PAP2 (RNAP II associated polypeptide) protein and the yeast Rtr1 proteins. Its function is not known however it is thought to be a zinc finger.
Probab=24.15 E-value=39 Score=27.70 Aligned_cols=12 Identities=33% Similarity=0.863 Sum_probs=10.5
Q ss_pred eeecChHHhHHh
Q 008130 90 SYHCSPKCFSDA 101 (576)
Q Consensus 90 ~~fc~q~Cfk~~ 101 (576)
+.|||..||+.+
T Consensus 59 ~~fCS~~C~~~s 70 (79)
T PF04181_consen 59 SKFCSKDCYKAS 70 (79)
T ss_pred cCcCCHHHHHHH
Confidence 489999999985
No 50
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=23.47 E-value=38 Score=24.69 Aligned_cols=11 Identities=36% Similarity=0.812 Sum_probs=8.8
Q ss_pred eeecChHHhHH
Q 008130 90 SYHCSPKCFSD 100 (576)
Q Consensus 90 ~~fc~q~Cfk~ 100 (576)
=+|||++|-+.
T Consensus 25 Y~FCS~~C~~~ 35 (47)
T PF04945_consen 25 YYFCSEGCKEK 35 (47)
T ss_dssp EEESSHHHHHH
T ss_pred EEEcCHHHHHH
Confidence 58999999654
No 51
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=22.59 E-value=1.1e+02 Score=23.52 Aligned_cols=30 Identities=37% Similarity=0.907 Sum_probs=21.2
Q ss_pred eeecchhhccCCCCCceeecChHHhHHhHHHHHHHHH
Q 008130 74 TLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHD 110 (576)
Q Consensus 74 ~l~c~~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~~h~ 110 (576)
.+.||.| ||| ++||.+=.++....|+.+=.
T Consensus 14 ~~~Cp~c---Gip----thcS~ehw~~D~e~H~~~c~ 43 (55)
T PF13824_consen 14 NFECPDC---GIP----THCSEEHWEDDYEEHRQLCE 43 (55)
T ss_pred CCcCCCC---CCc----CccCHHHHHHhHHHHHHHHH
Confidence 5888844 885 57888777777777776443
No 52
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=21.27 E-value=88 Score=35.70 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=14.3
Q ss_pred CCCCCcccEEEEEEEec
Q 008130 556 EWSSDHIALLAEFRCKP 572 (576)
Q Consensus 556 ~~pSDH~pl~adf~~k~ 572 (576)
...|||.||.|.|.++-
T Consensus 577 i~~SDHRPV~A~F~v~V 593 (621)
T PLN03191 577 IRLSDHRPVSSMFLVEV 593 (621)
T ss_pred cccCCchhcceEEEEEE
Confidence 35799999999999864
No 53
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=20.31 E-value=47 Score=37.09 Aligned_cols=24 Identities=38% Similarity=0.892 Sum_probs=17.7
Q ss_pred ccCCCCCCceeecchhhccCCCCCceeecCh
Q 008130 65 CSVHPSEQATLQCLGCVKAKIPVAKSYHCSP 95 (576)
Q Consensus 65 c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~q 95 (576)
| .+|.+ |+|+.|+...|. +|||..
T Consensus 8 C-~~C~~---irc~~c~~~Ei~---~~yCp~ 31 (483)
T PF05502_consen 8 C-EHCHK---IRCPRCVSEEID---SYYCPN 31 (483)
T ss_pred c-ccccc---cCChhhcccccc---eeECcc
Confidence 5 56654 678888888886 888764
Done!