Query 008130
Match_columns 576
No_of_seqs 423 out of 2119
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 18:50:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ngq_A CCR4-NOT transcription 100.0 4.4E-59 1.5E-63 496.8 27.1 323 219-573 8-384 (398)
2 4b8c_D Glucose-repressible alc 100.0 1.6E-44 5.5E-49 414.2 6.3 292 251-573 392-720 (727)
3 4gz1_A Tyrosyl-DNA phosphodies 100.0 3.5E-28 1.2E-32 239.5 17.9 242 250-570 6-254 (256)
4 4f1h_A Tyrosyl-DNA phosphodies 100.0 4.2E-28 1.4E-32 235.8 17.2 244 252-569 2-249 (250)
5 3l1w_A Uncharacterized protein 100.0 7.2E-27 2.5E-31 232.8 23.3 237 254-572 1-253 (257)
6 4fva_A 5'-tyrosyl-DNA phosphod 99.9 9.2E-27 3.1E-31 229.7 22.7 237 249-569 9-255 (256)
7 3g6s_A Putative endonuclease/e 99.9 1.5E-26 5.2E-31 232.0 22.6 244 252-571 2-261 (267)
8 4gew_A 5'-tyrosyl-DNA phosphod 99.9 3.2E-26 1.1E-30 241.7 22.1 237 249-569 115-361 (362)
9 3mpr_A Putative endonuclease/e 99.9 1.4E-25 4.7E-30 229.7 24.1 259 250-571 3-290 (298)
10 3teb_A Endonuclease/exonucleas 99.9 1.7E-25 5.9E-30 223.0 19.1 240 252-570 2-266 (266)
11 1zwx_A SMCL, sphingomyelinase- 99.9 1.8E-25 6.1E-30 227.9 16.0 179 250-449 7-210 (301)
12 3i41_A Beta-hemolysin; beta to 99.9 3.9E-24 1.3E-28 221.5 16.2 179 249-449 25-229 (317)
13 2ddr_A Sphingomyelin phosphodi 99.9 3.9E-23 1.3E-27 210.8 18.6 179 249-449 5-216 (306)
14 1ako_A Exonuclease III; AP-end 99.9 5.4E-23 1.8E-27 205.1 17.4 156 254-444 1-161 (268)
15 2jc4_A Exodeoxyribonuclease II 99.9 2.9E-22 9.9E-27 198.4 19.6 150 254-442 1-154 (256)
16 2jc5_A Exodeoxyribonuclease; h 99.9 1.1E-21 3.6E-26 194.7 15.9 149 254-441 2-156 (259)
17 2voa_A AF_EXO, XTHA, exodeoxyr 99.9 1.3E-20 4.3E-25 187.1 18.6 148 254-441 2-153 (257)
18 2o3h_A DNA-(apurinic or apyrim 99.8 6.9E-20 2.4E-24 185.2 19.3 152 249-440 24-183 (285)
19 3g91_A MTH0212, exodeoxyribonu 99.8 6.1E-20 2.1E-24 183.9 17.1 242 253-570 3-257 (265)
20 1vyb_A ORF2 contains A reverse 99.8 4.2E-20 1.4E-24 180.6 15.1 149 250-441 4-152 (238)
21 1hd7_A DNA-(apurinic or apyrim 99.8 9.6E-20 3.3E-24 188.2 18.3 155 249-441 57-217 (318)
22 2j63_A AP-endonuclease; base e 99.8 2.4E-19 8.2E-24 194.7 18.2 63 250-329 146-212 (467)
23 2a40_B Deoxyribonuclease-1; WA 99.8 3.1E-18 1.1E-22 171.6 15.0 158 254-445 1-182 (260)
24 1wdu_A TRAS1 ORF2P; four-layer 99.8 2.9E-18 9.7E-23 169.9 14.4 145 250-440 16-160 (245)
25 2ei9_A Non-LTR retrotransposon 99.7 4.8E-16 1.6E-20 154.6 15.3 37 253-307 7-43 (240)
26 2imq_X Salivary nitrophorin; f 99.7 1E-16 3.5E-21 163.3 9.9 166 251-450 6-190 (282)
27 2f1n_A CDT B, cytolethal diste 99.6 4.4E-16 1.5E-20 153.7 9.0 161 249-447 11-198 (262)
28 1sr4_B CDT B, cytolethal diste 99.6 2.3E-15 7.8E-20 150.1 11.7 163 252-447 3-189 (261)
29 1i9z_A Synaptojanin, phosphati 99.5 2E-13 6.8E-18 142.6 17.7 78 362-450 143-226 (347)
30 2xsw_A 72 kDa inositol polypho 99.3 1.3E-11 4.4E-16 129.3 13.8 57 386-442 141-212 (357)
31 3mtc_A Type II inositol-1,4,5- 99.0 2.5E-08 8.7E-13 102.0 21.3 68 362-440 120-196 (313)
32 4a9c_A Phosphatidylinositol-3, 98.9 1.9E-08 6.6E-13 103.1 17.7 143 296-450 46-210 (316)
33 2dj8_A Protein CBFA2T1; zinc f 94.9 0.02 6.9E-07 43.6 3.6 37 63-107 16-52 (60)
34 2od1_A Protein CBFA2T1; zinc f 94.8 0.019 6.5E-07 43.8 3.4 37 63-107 14-50 (60)
35 2d8q_A BLU protein, zinc finge 94.7 0.021 7.2E-07 45.0 3.4 40 63-110 16-55 (70)
36 2odd_A Protein CBFA2T1; MYND z 94.6 0.02 6.8E-07 44.2 3.0 38 63-108 18-55 (64)
37 2jw6_A Deformed epidermal auto 94.1 0.017 6E-07 42.5 1.6 37 63-107 10-46 (52)
38 3qwp_A SET and MYND domain-con 88.6 0.26 8.9E-06 52.3 3.9 39 63-109 48-88 (429)
39 3qww_A SET and MYND domain-con 88.3 0.24 8.2E-06 52.7 3.3 38 63-108 50-89 (433)
40 3n71_A Histone lysine methyltr 86.6 0.45 1.5E-05 51.5 4.2 40 63-110 50-91 (490)
41 2yqq_A Zinc finger HIT domain- 61.5 5.1 0.00017 29.8 2.6 28 64-100 14-41 (56)
42 1lv3_A Hypothetical protein YA 47.1 8.1 0.00028 29.9 1.7 26 74-99 9-37 (68)
43 1x4s_A Protein FON, zinc finge 46.0 8 0.00028 29.0 1.5 29 63-100 12-44 (59)
44 4dix_A Plectin-related protein 40.9 24 0.00082 33.2 4.1 20 178-197 65-84 (230)
45 2w0t_A Lethal(3)malignant brai 27.5 25 0.00086 24.6 1.5 28 74-101 6-37 (43)
46 1jjd_A Metallothionein, SMTA; 27.0 23 0.00078 26.2 1.3 19 82-100 20-38 (55)
47 3vhs_A ATPase wrnip1; zinc fin 26.8 15 0.00053 22.5 0.3 10 74-83 6-15 (29)
No 1
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=100.00 E-value=4.4e-59 Score=496.78 Aligned_cols=323 Identities=35% Similarity=0.595 Sum_probs=259.9
Q ss_pred CCCCCCCCceeeeCCCCccccccccCCCCCCCCCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCC
Q 008130 219 PAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRA 298 (576)
Q Consensus 219 p~p~p~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~a 298 (576)
+.|+|+.|.||.+..+ .+......||||||||+++.|+++++|+|||.+.++|.+|++.|+++|..++|
T Consensus 8 ~~~~p~~R~wi~~~~~-----------~~~~~~~~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~p 76 (398)
T 3ngq_A 8 HPEQLPPRPWITLKER-----------DQILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDA 76 (398)
T ss_dssp ----CCCCCEEECSCC-----------C--CCCEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCcceECCCC-----------CCCCCCCCEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCC
Confidence 5667789999997651 12224568999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccchhhHHHHHHHHHhhcCCeEEEeccC------------Ce---eeeecccccccccc---------cCcccc
Q 008130 299 DIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKT------------NE---VEFNKAAQSLTDAI---------LPSAQK 354 (576)
Q Consensus 299 DIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k~------------~~---i~f~~~~ls~~~~~---------~~~~~~ 354 (576)
||||||||+..++.+++.+.|..+||.++|..++ ++ |+|++..+.+.+.. .+..++
T Consensus 77 DIi~lQEv~~~q~~~~l~~~L~~~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~~s~~~ 156 (398)
T 3ngq_A 77 DIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGS 156 (398)
T ss_dssp SEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCTTC
T ss_pred CEEEEecccHHHHHHHHHHHHHhCCceEEEecCCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCcccccccc
Confidence 9999999998888788889999999999987542 11 67777776654321 112345
Q ss_pred cccccccc-cCcEEEEEEEeeeecCCCC----CCCCCCceEEEEeeecccCCCchhhHHHHHHHHHHHHHHHhhc-----
Q 008130 355 KNALNRLV-KDNVALIVVLEAKFSNQGA----DTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAAS----- 424 (576)
Q Consensus 355 ~~~~~r~~-~d~val~~~Le~~~~~~~~----~~~~~g~~l~V~NTHL~~~p~~~~vRl~Q~~~L~~~L~~~~~~----- 424 (576)
...++|++ ++|+|++++|+.+...... .....++.|+|+||||+|+|.+.++|+.|+..|++.|+++.++
T Consensus 157 ~~~~~Ri~t~~nval~~~L~~~~~~~~~~~~~~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~~~~~~~ 236 (398)
T 3ngq_A 157 EAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRP 236 (398)
T ss_dssp HHHHHTTTTCCCEEEEEEEEECGGGC-----------CCEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred hhhhcceeeccceeEEEEEEEcccccccccccccCCCCcEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 56788887 5899999999986321000 0012467899999999999999999999999999999988532
Q ss_pred -------CCCCEEEEecCCCCCCChhhHhhhcCCCCCCCCCCCCCCCCCc----CC-------CcccccCCCcchhhhhh
Q 008130 425 -------ADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTIL----RP-------HTKLTHQLPLVSAYSSF 486 (576)
Q Consensus 425 -------~~~pvIl~GDFNs~p~S~~~~lL~~g~v~~~h~d~~~~~~~~~----~~-------~~~l~h~~~L~Say~~~ 486 (576)
.+.|+|||||||+.|+|++|++|++|.++.+|+||....|+.. .. ...+.|+|+|.|||..
T Consensus 237 ~~~~~~~~~~PvIl~GDFNs~P~s~vy~~L~~G~v~~~h~d~~~~~y~~~~~~~~~~~~~~~~~~~~~h~~~L~SAy~~- 315 (398)
T 3ngq_A 237 GSPTADPNSIPLVLCADLNSLPDSGVVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYEN- 315 (398)
T ss_dssp --------CCCEEEEEECSCCTTSHHHHHHHHTEEETTCGGGCC-----GGGGGCC-------CCEEECSCCEEETTTT-
T ss_pred ccccccCCCCceEEEeeCCCCCCCHHHHHHhcCCCCCCChhhhhcccccccccccccccccccccccccCccccccccC-
Confidence 3579999999999999999999999999999999986544321 11 1358899999999963
Q ss_pred hhhccCCccccccccCCCCCCCCccccccCccCcceeEEEeeCCCcceeeccccCChhhhc--cCCCCCCCCCCCCcccE
Q 008130 487 ARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLR--KDTALPSPEWSSDHIAL 564 (576)
Q Consensus 487 ~~~~~g~g~~~~~~~~~~~~~~p~fTn~t~~f~~~IDYIf~s~~~l~v~~~l~~~~~~~~~--~~~~lP~~~~pSDH~pl 564 (576)
++|+||||+.+|.++||||||+++.|.|.++++.++.+++. +..|+||.+|||||+||
T Consensus 316 --------------------~~~~fTnyt~~F~g~lDYI~~s~~~l~v~~vl~~~~~~~l~~~~~~glP~~~~PSDHi~l 375 (398)
T 3ngq_A 316 --------------------NLMPYTNYTFDFKGVIDYIFYSKTHMNVEGVLGPLDPQWLVENNITGCPHPHIPSDHFSL 375 (398)
T ss_dssp --------------------TSSSCSEECSSCEECCEEEEEETTTEEEEEEECCCCHHHHHHTTCCSSCBTTBCSSBCCE
T ss_pred --------------------CCCCceeccCCcCCceeEEEEeCCceEEEeecCCCCHHHhccccccCCCCCCCCCcchhe
Confidence 37899999999999999999999889999999988888775 68999999999999999
Q ss_pred EEEEEEecC
Q 008130 565 LAEFRCKPR 573 (576)
Q Consensus 565 ~adf~~k~~ 573 (576)
+|+|+|++.
T Consensus 376 ~a~f~~~~~ 384 (398)
T 3ngq_A 376 LTQLELHPP 384 (398)
T ss_dssp EEEEEECCC
T ss_pred eEEEEEccC
Confidence 999999876
No 2
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.6e-44 Score=414.23 Aligned_cols=292 Identities=37% Similarity=0.641 Sum_probs=96.2
Q ss_pred CCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEEec
Q 008130 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKR 330 (576)
Q Consensus 251 ~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~ 330 (576)
...+++|||||+++.|+....|+|||.+.++|.+|+..|+++|..++|||||||||+.+++.+++.+.|+++||.++|..
T Consensus 392 ~~~~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l~~~gY~~~~~~ 471 (727)
T 4b8c_D 392 KRTFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFHA 471 (727)
T ss_dssp ----------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTTTCC-------CEEC--
T ss_pred ccceeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHHHHHHHHhCCccEEEec
Confidence 45789999999999999999999999999999999999999999999999999999998898888889999999999854
Q ss_pred cCC---------------eeeeecccccccccccCcc-----------cccccccccc-cCcEEEEEEEeeeecCCCCCC
Q 008130 331 KTN---------------EVEFNKAAQSLTDAILPSA-----------QKKNALNRLV-KDNVALIVVLEAKFSNQGADT 383 (576)
Q Consensus 331 k~~---------------~i~f~~~~ls~~~~~~~~~-----------~~~~~~~r~~-~d~val~~~Le~~~~~~~~~~ 383 (576)
+.+ .++|++..+.+.+...... .....++|.+ ++++++++.|+.+.
T Consensus 472 ~~~~~~~~~~~~~~~~G~AI~y~~srf~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~l~~~~------- 544 (727)
T 4b8c_D 472 KARAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDFSGAWMKHKKFQRTEDYLNRAMNKDNVALFLKLQHIP------- 544 (727)
T ss_dssp --------------CCCCEEEC----------------------------------------------------------
T ss_pred cCCcccccccCCCCcccEEEEEEcccceEeeeeEEeechhhhhchhhcccHHHHhhcccCCcEEEEEEEeecC-------
Confidence 321 1566655554433211000 0112244443 56788888887632
Q ss_pred CCCCceEEEEeeecccCCCchhhHHHHHHHHHHHHHHHhhc----------CCCCEEEEecCCCCCCChhhHhhhcCCCC
Q 008130 384 PGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAAS----------ADIPMLVCGDFNSVPGSAPHALLAMGKVE 453 (576)
Q Consensus 384 ~~~g~~l~V~NTHL~~~p~~~~vRl~Q~~~L~~~L~~~~~~----------~~~pvIl~GDFNs~p~S~~~~lL~~g~v~ 453 (576)
.++.|+|+||||+|.|.+.++|+.|+..++++|+++.+. .+.|+|||||||+.|++++|++|+.|.++
T Consensus 545 --~g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~s~~~~~l~~~~v~ 622 (727)
T 4b8c_D 545 --SGDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINSAVYELINTGRVQ 622 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --CCceEEEEEeccccCCCCCchHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCCCCCCcceEeeecCCcC
Confidence 467899999999999988999999999999999887432 36799999999999999999999999888
Q ss_pred CCCCCCCCCCCCCcCCCcccccCCCcchhhhhhhhhccCCccccccccCCCCCCCCccccccCccCcceeEEEeeCCCcc
Q 008130 454 PVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLS 533 (576)
Q Consensus 454 ~~h~d~~~~~~~~~~~~~~l~h~~~L~Say~~~~~~~~g~g~~~~~~~~~~~~~~p~fTn~t~~f~~~IDYIf~s~~~l~ 533 (576)
.|++|....++.+.. ..+.|.+.+.++|.. .+++.||+|+++|.++|||||++++.+.
T Consensus 623 -~~~d~~~~~~~~~~~-~~~~~~~~l~say~~--------------------~~~~~~T~~~~~~~~~LDyI~~S~~~l~ 680 (727)
T 4b8c_D 623 -IHQEGNGRDFGYMSE-KNFSHNLALKSSYNC--------------------IGELPFTNFTPSFTDVIDYIWFSTHALR 680 (727)
T ss_dssp -------------------------------------------------------CCCSBCCSSCCBCC-----------
T ss_pred -cchhhcccccccccc-ccccccccccchhhc--------------------CCCCccccccCccCCeeeeEEEcCCcee
Confidence 889998777776554 568889999999864 3478899999999999999999998888
Q ss_pred eeeccccCChhhhccCCCCCCCCCCCCcccEEEEEEEecC
Q 008130 534 VESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKPR 573 (576)
Q Consensus 534 v~~~l~~~~~~~~~~~~~lP~~~~pSDH~pl~adf~~k~~ 573 (576)
+.++++.++.+.+.++.++|+..+||||+||+|+|++++.
T Consensus 681 ~~~~~~~~~~~~~~~~~~~P~~~~pSDH~pV~a~f~l~~~ 720 (727)
T 4b8c_D 681 VRGLLGEVDPEYVSKFIGFPNDKFPSDHIPLLARFEFMKT 720 (727)
T ss_dssp ------CCCHHHHTTCSSSSBTTBCSSBCC----------
T ss_pred EeeccCCCCHHHhcccCCCCCCCCCCCceeEEEEEEEecC
Confidence 8888889998888899999999999999999999999764
No 3
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.96 E-value=3.5e-28 Score=239.47 Aligned_cols=242 Identities=18% Similarity=0.195 Sum_probs=140.8
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhh-cC-CeEE
Q 008130 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDK-HG-YQAL 327 (576)
Q Consensus 250 ~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~-~G-Y~~~ 327 (576)
...+||||||||.+.. ..+|..|.+.|+++|+.++|||||||||...++.. |.+ .+ |...
T Consensus 6 ~~~~l~v~swNi~g~~-------------~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~-----l~~~~~~~~~~ 67 (256)
T 4gz1_A 6 DSSTISFITWNIDGLD-------------GCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAY-----LKKRAASYTII 67 (256)
T ss_dssp GGGEEEEEEEECCTTC-------------CTTHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHH-----HHHHCTTEEEE
T ss_pred CCCcEEEEEEEcCCCc-------------CcCHHHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH-----HHhhcccccee
Confidence 4568999999997632 23589999999999999999999999997654432 332 22 2222
Q ss_pred EeccCCe---eeeecccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCCch
Q 008130 328 YKRKTNE---VEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELK 404 (576)
Q Consensus 328 ~~~k~~~---i~f~~~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~~~ 404 (576)
.....+. +.+....+...... ..........+..+.+.+.. .++.+.|+||||.+.+...
T Consensus 68 ~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-----------~~~~~~v~~~Hl~~~~~~~ 130 (256)
T 4gz1_A 68 TGNEEGYFTAILLKKGRVKFKSQE------IIPFPNTKMMRNLLCVNVSL-----------GGNEFCLMTSHLESTREHS 130 (256)
T ss_dssp ESCSSSSEEEEEEETTTEEEEEEE------EEECTTCSSCCEEEEEEEEE-----------TTEEEEEEECBCCCSGGGH
T ss_pred eccccCCceEEEEEeccccceecc------cccCCcccccceEEEEEEEe-----------CCEEEEEEeecccccccch
Confidence 2222111 23332222211100 00011111122333343332 4678999999998888778
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChhhHhhhcCCCCCCCCCCCCCCCCCcCCCcccccCCCcchhhh
Q 008130 405 DVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYS 484 (576)
Q Consensus 405 ~vRl~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~~~lL~~g~v~~~h~d~~~~~~~~~~~~~~l~h~~~L~Say~ 484 (576)
..|..|+..+++.|++.. .+.|+|||||||+.|.+..+..+.... +.++|.
T Consensus 131 ~~~~~q~~~~~~~l~~~~--~~~pvIl~GDfN~~~~~~~~~~~~~~~---------------------------~~~~~~ 181 (256)
T 4gz1_A 131 AERIRQLKTVLGKMQEAP--DSTTVIFAGDTNLRDQEVIKCGGLPDN---------------------------VFDAWE 181 (256)
T ss_dssp HHHHHHHHHHHHHHHHSC--TTSEEEEEEECCCCHHHHHHHTCSCTT---------------------------EEEHHH
T ss_pred hhhhHHHHHHhhhhhhcc--CcceEEEeCccCCCcchhhhhhhccch---------------------------hhhHHH
Confidence 889999999999888653 457999999999987765544322110 112222
Q ss_pred hhhhhccCCccccccccCCCCCCCCccccccCccCcceeEEEeeCCCcc--eeeccccCChhhhccCCCCCCCCCCCCcc
Q 008130 485 SFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLS--VESLLELLDEDSLRKDTALPSPEWSSDHI 562 (576)
Q Consensus 485 ~~~~~~~g~g~~~~~~~~~~~~~~p~fTn~t~~f~~~IDYIf~s~~~l~--v~~~l~~~~~~~~~~~~~lP~~~~pSDH~ 562 (576)
..... .+.++ ..+ .....++.+...+..||||||+++.... +... . +.....++...++|||+
T Consensus 182 ~~~~~-~~~~~-----~~~--~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~SDH~ 246 (256)
T 4gz1_A 182 FLGKP-KHCQY-----TWD--TKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSL-D------LVGLEKLDCGRFPSDHW 246 (256)
T ss_dssp HTTCC-GGGSC-----SEE--TTTCCTTCCSSCCEECCEEEEEECC-CSEEEEEE-E------EECCSCCTTSSCSCSBC
T ss_pred HhcCC-CCCCc-----ccc--cCCCCccccCCCCCccEEEEEEECCccceeeeEE-E------EEeccccCCCCCCCccc
Confidence 11000 00000 000 0111223344566789999999976322 2211 1 11233466778899999
Q ss_pred cEEEEEEE
Q 008130 563 ALLAEFRC 570 (576)
Q Consensus 563 pl~adf~~ 570 (576)
||+|+|++
T Consensus 247 pv~a~~~i 254 (256)
T 4gz1_A 247 GLLCTLNV 254 (256)
T ss_dssp EEEEEEEE
T ss_pred cEEEEEEE
Confidence 99999987
No 4
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.95 E-value=4.2e-28 Score=235.83 Aligned_cols=244 Identities=16% Similarity=0.158 Sum_probs=139.7
Q ss_pred CcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEEecc
Q 008130 252 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 331 (576)
Q Consensus 252 ~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k 331 (576)
.+||||||||++.. ...|..|.+.|++.|+.++|||||||||...++.. .....++...+...
T Consensus 2 ~~l~v~t~Ni~g~~-------------~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~----l~~~~~~~~~~~~~ 64 (250)
T 4f1h_A 2 SKLSIISWNVDGLD-------------TLNLADRARGLCSYLALYTPDVVFLQELIPAYVQY----LKKRAVSYLFFEGS 64 (250)
T ss_dssp CCEEEEEEECCTTC-------------CTTHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHH----HHHHCTTEEEEESC
T ss_pred CeEEEEEEEeCCCC-------------CcCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH----HHHhccCceeeccc
Confidence 47999999998532 23589999999999999999999999997654432 22344555444433
Q ss_pred CCe----eeeecccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCCchhhH
Q 008130 332 TNE----VEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVK 407 (576)
Q Consensus 332 ~~~----i~f~~~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vR 407 (576)
... +.+....+...... ..........+..+.+.+.. .+..+.|+||||.+.+.....|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-----------~~~~~~v~~~hl~~~~~~~~~r 127 (250)
T 4f1h_A 65 DDGYFTGIMLRKSRVKFLESE------IICFPTTQMMRNLLIAQVTF-----------SGQKLYLMTSHLESCKNQSQER 127 (250)
T ss_dssp SSSSEEEEEEETTTCEEEEEE------EEECTTCSSCCEEEEEEEEE-----------TTEEEEEEECBCCCSGGGHHHH
T ss_pred ccccCceeEEeeccccceecc------cccccCccccceEEEEEEec-----------CCcEEEEeccccccccccHHHH
Confidence 211 22222222111100 00001111123333333332 4678999999998888888899
Q ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChhhHhhhcCCCCCCCCCCCCCCCCCcCCCcccccCCCcchhhhhhh
Q 008130 408 LWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFA 487 (576)
Q Consensus 408 l~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~~~lL~~g~v~~~h~d~~~~~~~~~~~~~~l~h~~~L~Say~~~~ 487 (576)
..|+..+++.|++.. .+.|+|||||||+.+.+..+..+.... +.++|....
T Consensus 128 ~~q~~~~~~~l~~~~--~~~pvIl~GDfN~~~~~~~~~~~~~~~---------------------------~~~~~~~~~ 178 (250)
T 4f1h_A 128 TKQLRVVLQKIKEAP--EDAIVIFAGDTNLRDAEVANVGGLPAG---------------------------VCDVWEQLG 178 (250)
T ss_dssp HHHHHHHHHHHHHSC--TTEEEEEEEECCCCHHHHHTTTSSCTT---------------------------EEEHHHHTT
T ss_pred HHHHHHHHHHHHhcC--CCCCEEEEEecCCCCcchhhhhhcccc---------------------------chHHHHHhc
Confidence 999999999987653 456999999999987655443221110 112222211
Q ss_pred hhccCCccccccccCCCCCCCCccccccCccCcceeEEEeeCCCcceeeccccCChhhhccCCCCCCCCCCCCcccEEEE
Q 008130 488 RIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAE 567 (576)
Q Consensus 488 ~~~~g~g~~~~~~~~~~~~~~p~fTn~t~~f~~~IDYIf~s~~~l~v~~~l~~~~~~~~~~~~~lP~~~~pSDH~pl~ad 567 (576)
.. .. .....+ .....++.+......||||||+++... ..... +....+.....+|...++|||+||+|+
T Consensus 179 ~~-----~~-~~~~~~--~~~~~~~~~~~~~~~riD~I~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~SDH~pv~a~ 247 (250)
T 4f1h_A 179 KQ-----EH-CRYTWD--TKANSNKTVPYVSRCRFDRIFLRSAKT-APPVT--PDHMALIGMEKLDCGRYTSDHWGIYCT 247 (250)
T ss_dssp CC-----GG-GCCSEE--TTTCCSSCCSSCCEECCEEEEEECCTT-SCCCE--EEEEEEECCSCCTTSSCSCSBCEEEEE
T ss_pred CC-----cc-CCcccc--cccCCCCCcCCCCCccEEEEEEeCccc-cccee--eeEEEEecccccCCCCCCCcccCEEEE
Confidence 00 00 000000 001123333445567999999997622 11110 000112223456778899999999999
Q ss_pred EE
Q 008130 568 FR 569 (576)
Q Consensus 568 f~ 569 (576)
|+
T Consensus 248 f~ 249 (250)
T 4f1h_A 248 FN 249 (250)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 5
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.95 E-value=7.2e-27 Score=232.79 Aligned_cols=237 Identities=20% Similarity=0.295 Sum_probs=148.3
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEEeccCC
Q 008130 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (576)
Q Consensus 254 ~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k~~ 333 (576)
||||||||++... +.....|++|++.|+++|..++|||||||||+..++.++ .. ..||..+...+..
T Consensus 1 lrv~t~Ni~~~~~---------~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l-~~---~l~y~~~~~~~~~ 67 (257)
T 3l1w_A 1 MKIATYNVRVDTE---------YDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDL-KA---YTTFTCLSAEREG 67 (257)
T ss_dssp CEEEEEECCCCCG---------GGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHH-HH---HSSSEEEEEESSS
T ss_pred CEEEEEEeccCCC---------CccccChHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHH-Hh---cCCCcEEEecccC
Confidence 6899999997542 234577999999999999999999999999987665443 22 3589776554321
Q ss_pred ---e----eeeecccccccccc---cCccccccc-ccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCC
Q 008130 334 ---E----VEFNKAAQSLTDAI---LPSAQKKNA-LNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQE 402 (576)
Q Consensus 334 ---~----i~f~~~~ls~~~~~---~~~~~~~~~-~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~ 402 (576)
. +.+++..+.+.+.. ......... .......+.++++.++.. ..++.+.|+||||.+.
T Consensus 68 ~~~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~---------~~g~~~~v~~~Hl~~~-- 136 (257)
T 3l1w_A 68 DGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKET---------TQNTPFLVINVHLDHI-- 136 (257)
T ss_dssp SSCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEET---------TCSSCEEEEEEECCSS--
T ss_pred CCCCceEEEEEEcceEEEEecCeEECcCCCCcccccccccccceeEEEEEEEc---------CCCCEEEEEEeCCCCC--
Confidence 1 34443333222210 000000000 000123567777777752 2366899999999764
Q ss_pred chhhHHHHHHHHHHHHHH-HhhcCCCCEEEEecCCCCCCChhhHhhhcCCCCCCCCCCCCCCCCCcCCCcccccCCCcch
Q 008130 403 LKDVKLWQVHTLLKGLEK-IAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVS 481 (576)
Q Consensus 403 ~~~vRl~Q~~~L~~~L~~-~~~~~~~pvIl~GDFNs~p~S~~~~lL~~g~v~~~h~d~~~~~~~~~~~~~~l~h~~~L~S 481 (576)
....|..|+..|++.+++ +.. + |+|||||||+.|++..+++|..|..+
T Consensus 137 ~~~~r~~q~~~l~~~i~~~~~~--~-pvil~GDfN~~~~~~~~~~l~~~l~d---------------------------- 185 (257)
T 3l1w_A 137 SAHARLAGMTVILEELHDKIAQ--Y-PTLLMGDFNAESGEEVHQLVQKKFQD---------------------------- 185 (257)
T ss_dssp CHHHHHHHHHHHHHHTHHHHHH--S-CEEEEEECCCCTTSHHHHHHTTTCEE----------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHcCC--C-CEEEEeeCCCCCCcHHHHHhhhhccc----------------------------
Confidence 357899999999999984 432 3 99999999999999999988765322
Q ss_pred hhhhhhhhccCCccccccccCCCCCCCCccccccC----ccCcceeEEEeeCCCcceeeccccCChhhhccCCCCCCCCC
Q 008130 482 AYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTR----DFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEW 557 (576)
Q Consensus 482 ay~~~~~~~~g~g~~~~~~~~~~~~~~p~fTn~t~----~f~~~IDYIf~s~~~l~v~~~l~~~~~~~~~~~~~lP~~~~ 557 (576)
++..... ......|..+.. ....+|||||+ ++ +.+.......+ .+....
T Consensus 186 ~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~riD~i~~-~~-~~~~~~~v~~~---------~~~~~~ 238 (257)
T 3l1w_A 186 SKNLATH----------------YGPRGTFQNFTYTKPWAELEEIDYIYV-KG-WQVQQTASLTD---------SIDGRF 238 (257)
T ss_dssp GGGTSEE----------------ESCSCCBCTTCTTCCGGGCBCCEEEEE-ES-EEEEEEEECCC---------CBTTBC
T ss_pred hhhhhcc----------------cCCCCcccCCcccCCCCCCCceeEEEE-CC-cEEEEEEEecc---------CcCCcc
Confidence 1111000 000112222211 23479999999 44 66554432221 112457
Q ss_pred CCCcccEEEEEEEec
Q 008130 558 SSDHIALLAEFRCKP 572 (576)
Q Consensus 558 pSDH~pl~adf~~k~ 572 (576)
+|||.||+++|+++.
T Consensus 239 ~SDH~pv~~~l~~~~ 253 (257)
T 3l1w_A 239 PSDHFPLEAEVAGEN 253 (257)
T ss_dssp SSSBCCEEEEEEEC-
T ss_pred cCCcceEEEEEEEEe
Confidence 899999999999865
No 6
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.95 E-value=9.2e-27 Score=229.66 Aligned_cols=237 Identities=16% Similarity=0.100 Sum_probs=138.4
Q ss_pred CCCCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEE
Q 008130 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY 328 (576)
Q Consensus 249 ~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~ 328 (576)
.++.+||||||||.+.. ...|..|.+.|++.|+.++|||||||||....+.. + .+..++..++
T Consensus 9 ~~~~~l~v~s~Ni~g~~-------------~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~-l---~~~~~~~~~~ 71 (256)
T 4fva_A 9 LKGFEVSVMSWNIDGLD-------------GRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAP-I---DKLQSLYKIY 71 (256)
T ss_dssp CTTCEEEEEEEECCTTC-------------CTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHH-H---HGGGGTEEEE
T ss_pred CCCCEEEEEEEecCCCC-------------CcCHHHHHHHHHHHHHHcCCCEEEEEecChhHhHH-H---HHhcCCceEe
Confidence 45679999999997521 23589999999999999999999999997654432 1 2233444444
Q ss_pred eccCCeeeeecccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCCchhhHH
Q 008130 329 KRKTNEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKL 408 (576)
Q Consensus 329 ~~k~~~i~f~~~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vRl 408 (576)
...... .++...+++........ ....+......+..+.+.++. .++.|.|+||||.+.......|.
T Consensus 72 ~~~~~~-~~g~~il~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------~g~~~~v~~~Hl~~~~~~~~~~~ 138 (256)
T 4fva_A 72 YSNKGC-QYYTAILVSKMFDVEKH-DVIHFQNSGMYRTLQILEGSI-----------GGLKVFLLNTHLESTREHRPQRC 138 (256)
T ss_dssp ESSTTS-SSEEEEEEETTCEEEEE-EEEECTTCSSCCEEEEEEEEE-----------TTEEEEEEEEECCCSGGGHHHHH
T ss_pred ecCCCC-CcceEEEEeecccceec-ccccCCCCcccceeEEEEEEe-----------CCeEEEEEEecCCCCCcchHHHH
Confidence 332211 11122222211100000 000011111223344444443 46789999999988777777888
Q ss_pred HHHHHHHHHHHHHhh-cCCCCEEEEecCCCCCCChhhHhhhcCCCCCCCCCCCCCCCCCcCCCcccccCCCcchhhhhhh
Q 008130 409 WQVHTLLKGLEKIAA-SADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFA 487 (576)
Q Consensus 409 ~Q~~~L~~~L~~~~~-~~~~pvIl~GDFNs~p~S~~~~lL~~g~v~~~h~d~~~~~~~~~~~~~~l~h~~~L~Say~~~~ 487 (576)
.|+..+++.+..+.. ..+.|+|+|||||+.+.+..+. ...+.++|....
T Consensus 139 ~q~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~~~~~------------------------------~~~~~d~~~~~~ 188 (256)
T 4fva_A 139 AQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSRV------------------------------PDGVKDAWEAAG 188 (256)
T ss_dssp HHHHHHHHHHHHHHHHSTTCEEEEEEECCCCGGGCCCC------------------------------CTTCEEHHHHTT
T ss_pred HHHHHHHHHhhhhhhccCCCcEEEeccCCCCcchhhhh------------------------------hcchhhHHHHhC
Confidence 999988888776643 4567999999999876532110 012344444321
Q ss_pred hhccCCccccccccCCCCCCCCcccc---------ccCccCcceeEEEeeCCCcceeeccccCChhhhccCCCCCCCCCC
Q 008130 488 RIGVGLGMEHQRRRMDPTTNEPLFTH---------CTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWS 558 (576)
Q Consensus 488 ~~~~g~g~~~~~~~~~~~~~~p~fTn---------~t~~f~~~IDYIf~s~~~l~v~~~l~~~~~~~~~~~~~lP~~~~p 558 (576)
. .....||+ ....+..||||||++++ +.+.....+.. + .-.+...+|
T Consensus 189 ~-----------------~~~~~~T~~~~~~~~~~~~~~~~~RiD~I~~~~~-~~~~~~~~~~~-~-----~~~~~~~~~ 244 (256)
T 4fva_A 189 S-----------------DNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGP-LDKVKFTLEGR-Q-----RIRSCLCFP 244 (256)
T ss_dssp C-----------------CGGGCCSEETTTCCSSCSCCSCEECCEEEEEESS-CCEEEEEEECC-S-----CCTTTCSCS
T ss_pred C-----------------CCCCCcccccccCcccccCCCCCcCeEEEEEcCC-ceeeEEEEEee-E-----ecCCCCCCc
Confidence 1 01122332 12334578999999986 65544321111 1 111235679
Q ss_pred CCcccEEEEEE
Q 008130 559 SDHIALLAEFR 569 (576)
Q Consensus 559 SDH~pl~adf~ 569 (576)
|||+||+|+|.
T Consensus 245 SDH~pv~a~Fs 255 (256)
T 4fva_A 245 SDHWAINATFF 255 (256)
T ss_dssp CSSCEEEEEEE
T ss_pred CcccCEEEEEc
Confidence 99999999995
No 7
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.95 E-value=1.5e-26 Score=231.99 Aligned_cols=244 Identities=21% Similarity=0.303 Sum_probs=154.7
Q ss_pred CcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEEecc
Q 008130 252 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 331 (576)
Q Consensus 252 ~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k 331 (576)
.+||||||||+..... .....|..|++.|+++|..++|||||||||+..++..+ ...| .||..++...
T Consensus 2 ~~l~v~t~Ni~~~~~~---------~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l-~~~l--~~y~~~~~~~ 69 (267)
T 3g6s_A 2 TDVRWATFNIRYDNPQ---------DSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQFQDL-RAGL--PEYDGIGVGR 69 (267)
T ss_dssp EEEEEEEEECCCCCGG---------GGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHHHHHH-HHHC--TTEEEECCCT
T ss_pred CcEEEEEEEeccCCCC---------ccccCHHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHH-HHhc--cCCcEEEecC
Confidence 4799999999985421 23567999999999999999999999999987655442 3333 4676654332
Q ss_pred C-----C---eeeeecccccccccc---cCccccccc-c-cccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecc
Q 008130 332 T-----N---EVEFNKAAQSLTDAI---LPSAQKKNA-L-NRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVN 398 (576)
Q Consensus 332 ~-----~---~i~f~~~~ls~~~~~---~~~~~~~~~-~-~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~ 398 (576)
. + .++|++..+.+.... .+....... . ......++++++.++.+ ..++.|.|+||||.
T Consensus 70 ~~~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~---------~~~~~~~v~~~Hl~ 140 (267)
T 3g6s_A 70 DDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDK---------ATGKIFMAVNTHFD 140 (267)
T ss_dssp TTSSSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEEET---------TTCCEEEEEEEECC
T ss_pred CCCCcCCceeEEEEEccceEEEecccEecCCCCCccccccccccCcceEEEEEEEEc---------CCCCEEEEEEeCCC
Confidence 1 1 145544443332211 000000000 0 00113467778877752 24678999999996
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChhhHhhhcCCCCCCCCCCCCCCCCCcCCCcccccCCC
Q 008130 399 VHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLP 478 (576)
Q Consensus 399 ~~p~~~~vRl~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~~~lL~~g~v~~~h~d~~~~~~~~~~~~~~l~h~~~ 478 (576)
+. ....|..|++.|++.|+++.. +.|+|||||||+.|++.+|+.|..... .
T Consensus 141 ~~--~~~~R~~q~~~l~~~l~~~~~--~~pvIl~GDfN~~~~~~~~~~l~~~~~-------------------------~ 191 (267)
T 3g6s_A 141 HV--GEEARRQSALLIIRKIKEIVG--ERPAVVTGDFNVTDASDAYETITTNEF-------------------------V 191 (267)
T ss_dssp SS--CHHHHHHHHHHHHHHHHHHTT--TSCEEEEEECSSCTTSHHHHHHHSSSS-------------------------C
T ss_pred CC--CHHHHHHHHHHHHHHHHHhcC--CCCEEEEeECCCCCCCHHHHHhhcCCc-------------------------c
Confidence 54 367899999999999998753 679999999999999999998875420 1
Q ss_pred cchhhhhhhhhccCCccccccccCCCCCCCCccccccC---ccCcceeEEEeeCCCcceeeccccCChhhhccCCCCCCC
Q 008130 479 LVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTR---DFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSP 555 (576)
Q Consensus 479 L~Say~~~~~~~~g~g~~~~~~~~~~~~~~p~fTn~t~---~f~~~IDYIf~s~~~l~v~~~l~~~~~~~~~~~~~lP~~ 555 (576)
|.++|...... . ....+|+.+.+ ....+|||||++++ +.+.+....... ...
T Consensus 192 l~d~~~~~~~~-----~----------~~~~T~~~~~~~~~~~~~riD~I~~s~~-~~~~~~~v~~~~---------~~~ 246 (267)
T 3g6s_A 192 MKDAYKTAARV-----T----------GVDYTFHDFARIPAEDCEKIDFIFVTPQ-VLVKSCEIPAEV---------PEA 246 (267)
T ss_dssp CEEHHHHCSEE-----E----------ECSCSBCTTTTSCGGGCCCCEEEEECTT-SEEEEEEECCCC---------SSS
T ss_pred hhhhHhhhccc-----c----------CCCCCEeCCCCCCCCCCCcEeEEEeCCC-ceEEEEEEecCC---------CCC
Confidence 23444332100 0 01223333332 34589999999987 665544322110 113
Q ss_pred CCCCCcccEEEEEEEe
Q 008130 556 EWSSDHIALLAEFRCK 571 (576)
Q Consensus 556 ~~pSDH~pl~adf~~k 571 (576)
++|||+||+|++..-
T Consensus 247 -~~SDH~PV~a~~~~~ 261 (267)
T 3g6s_A 247 -LLSDHNPQLADLELE 261 (267)
T ss_dssp -CCCSBCCEEEEEEEC
T ss_pred -CCCCcccEEEEEEec
Confidence 689999999999864
No 8
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.94 E-value=3.2e-26 Score=241.74 Aligned_cols=237 Identities=17% Similarity=0.112 Sum_probs=143.2
Q ss_pred CCCCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEE
Q 008130 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY 328 (576)
Q Consensus 249 ~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~ 328 (576)
.++..||||||||.+.. ...+..|+..|++.|+.++|||||||||....+.. +...+ .+|..++
T Consensus 115 ~~~~~lkVlSWNI~Gl~-------------~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~~~~~-l~~~~--~~y~~~~ 178 (362)
T 4gew_A 115 LKGFEVSVMSWNIDGLD-------------GRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAP-IDKLQ--SLYKIYY 178 (362)
T ss_dssp TTTCEEEEEEEECCTTC-------------CTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHH-HHGGG--GTEEEEE
T ss_pred CCCCeEEEEEEEeCCCC-------------CcCHHHHHHHHHHHHHHcCCCEEEEEcCChhHhHH-HHHhc--CCceEEe
Confidence 45678999999997632 23588999999999999999999999997654432 22222 3455444
Q ss_pred eccCCeeeeecccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCCchhhHH
Q 008130 329 KRKTNEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKL 408 (576)
Q Consensus 329 ~~k~~~i~f~~~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vRl 408 (576)
....+. ++...+++.+...... ...........+.++++.+.. .+..|.|+||||.+.......|.
T Consensus 179 ~~~~~~--~G~aIlsk~~i~~~~~-~~~~~~~~~~~r~~l~~~i~~-----------~g~~l~v~ntHL~s~~~~~~~R~ 244 (362)
T 4gew_A 179 SNKGCQ--YYTAILVSKMFDVEKH-DVIHFQNSGMYRTLQILEGSI-----------GGLKVFLLNTHLESTREHRPQRC 244 (362)
T ss_dssp SSTTSS--SEEEEEEETTEEEEEE-EEEECTTCSSCCEEEEEEEEE-----------TTEEEEEEEEECCCSGGGHHHHH
T ss_pred CCCCCC--ceEEEEEeccCccccc-cccCCCCCcccceEEEEEEEE-----------CCEEEEEEEecCCccccchhHHH
Confidence 433222 2222333221100000 000011111234455555553 46789999999988777778899
Q ss_pred HHHHHHHHHHHHHhh-cCCCCEEEEecCCCCCCChhhHhhhcCCCCCCCCCCCCCCCCCcCCCcccccCCCcchhhhhhh
Q 008130 409 WQVHTLLKGLEKIAA-SADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFA 487 (576)
Q Consensus 409 ~Q~~~L~~~L~~~~~-~~~~pvIl~GDFNs~p~S~~~~lL~~g~v~~~h~d~~~~~~~~~~~~~~l~h~~~L~Say~~~~ 487 (576)
.|+..+++.+..+.. ..+.|+|||||||..|.+... ....|.++|....
T Consensus 245 ~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~~~~------------------------------~~~gl~Da~~~~~ 294 (362)
T 4gew_A 245 AQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSR------------------------------VPDGVKDAWEAAG 294 (362)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGGCCC------------------------------CCTTCEEHHHHTT
T ss_pred HHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcccch------------------------------hcchHHHHHHHhC
Confidence 999999988877643 456799999999988753211 0012345554431
Q ss_pred hhccCCccccccccCCCCCCCCccccc---------cCccCcceeEEEeeCCCcceeeccccCChhhhccCCCCCCCCCC
Q 008130 488 RIGVGLGMEHQRRRMDPTTNEPLFTHC---------TRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWS 558 (576)
Q Consensus 488 ~~~~g~g~~~~~~~~~~~~~~p~fTn~---------t~~f~~~IDYIf~s~~~l~v~~~l~~~~~~~~~~~~~lP~~~~p 558 (576)
. .....||++ ...+..||||||++++ +.+.....+ ..+. ..+...+|
T Consensus 295 ~-----------------~~~~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~~-l~~~~~~vi-~~~r-----i~~~~~~p 350 (362)
T 4gew_A 295 S-----------------DNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGP-LDKVKFTLE-GRQR-----IRSCLCFP 350 (362)
T ss_dssp C-----------------CGGGCCSEETTTCTTSCCSSCCEECCEEEEEESS-CCEEEEEEE-CCSC-----CTTTSSCS
T ss_pred C-----------------CCCCCcCcccccCcccccCCCCCcceEEEEEcCC-cceeEEEEE-eeee-----cCCCCCCC
Confidence 1 112234442 2234579999999987 655443211 1111 11235689
Q ss_pred CCcccEEEEEE
Q 008130 559 SDHIALLAEFR 569 (576)
Q Consensus 559 SDH~pl~adf~ 569 (576)
|||+||+|+|.
T Consensus 351 SDH~pV~A~FS 361 (362)
T 4gew_A 351 SDHWAINATFF 361 (362)
T ss_dssp CSSCEEEEEEE
T ss_pred CcccCEEEEEc
Confidence 99999999995
No 9
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.4e-25 Score=229.71 Aligned_cols=259 Identities=15% Similarity=0.169 Sum_probs=155.1
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEEe
Q 008130 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 329 (576)
Q Consensus 250 ~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~ 329 (576)
.+.+||||||||+....... .....|..|++.|+++|..++|||||||||+..++..+ ...| .+|..+..
T Consensus 3 ~~~~lrV~t~Ni~~~~~~~~-------~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l-~~~l--~~y~~~~~ 72 (298)
T 3mpr_A 3 QPTSLTVASYNLRNANGSDS-------ARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLHQLKDM-KEAL--PGYDYIGV 72 (298)
T ss_dssp CCEEEEEEEEECCCCCHHHH-------HHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHHHHHHH-HHHS--TTEEEECC
T ss_pred CCCcEEEEEEEeccCCCCCc-------ccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHH-HHhC--CCCcEEEE
Confidence 45689999999987431100 12457999999999999999999999999987655443 3444 24554433
Q ss_pred ccC-----C---eeeeecccccccccc---cCccccccccc-ccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeec
Q 008130 330 RKT-----N---EVEFNKAAQSLTDAI---LPSAQKKNALN-RLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHV 397 (576)
Q Consensus 330 ~k~-----~---~i~f~~~~ls~~~~~---~~~~~~~~~~~-r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL 397 (576)
... + .+.|++..+.+.+.. ........... .....++++++.++.+ ..++.|.|+||||
T Consensus 73 ~~~~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~~~~~R~~~~~~~~~~---------~~g~~~~v~~~Hl 143 (298)
T 3mpr_A 73 GRDDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAVLPRICSWGHFKCK---------DTGFEFLFFNLHM 143 (298)
T ss_dssp CTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEET---------TTCCEEEEEEEEC
T ss_pred ecCCCCCCCceeEEEEecCceEEEeccEEEccCCCCccCcccccccCceeEEEEEEEc---------CCCCEEEEEEecC
Confidence 221 1 145554444332211 00000000000 0012466777777752 2467899999999
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChhhHhhhcCCCCCCCCCCCCCCCCCcCCCcccccCC
Q 008130 398 NVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQL 477 (576)
Q Consensus 398 ~~~p~~~~vRl~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~~~lL~~g~v~~~h~d~~~~~~~~~~~~~~l~h~~ 477 (576)
.+ .....|..|+..|++.++++....+.|+|||||||+.|++..|+.|..+.
T Consensus 144 ~~--~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~~~~~~l~~~g-------------------------- 195 (298)
T 3mpr_A 144 DH--IGKKARVESAFLVQEKMKELGRGKNLPAILTGDFNVDQTHQSYDAFVSKG-------------------------- 195 (298)
T ss_dssp CS--SCHHHHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTSHHHHHHHTTS--------------------------
T ss_pred CC--CCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCHHHHHHhcCC--------------------------
Confidence 64 34678999999999999887533467999999999999999999887542
Q ss_pred CcchhhhhhhhhccCCccccccccCCCCCCCCccccccC--ccCcceeEEEeeCCCcceeeccccCChhh-------hcc
Q 008130 478 PLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTR--DFIGTLDYIFYTADSLSVESLLELLDEDS-------LRK 548 (576)
Q Consensus 478 ~L~Say~~~~~~~~g~g~~~~~~~~~~~~~~p~fTn~t~--~f~~~IDYIf~s~~~l~v~~~l~~~~~~~-------~~~ 548 (576)
.|.++|..... ++ ....+|+.+.. ....+|||||++++ +.+.+...+.+... ...
T Consensus 196 ~l~D~~~~~~~-----~~----------~~~~T~~~~~~~~~~~~rID~Il~s~~-~~v~~~~v~~~~~~~~~~~~~~~~ 259 (298)
T 3mpr_A 196 VLCDSYEKCDY-----RY----------ALNGTFNNFDPNSFTESRIDHIFVSPS-FHVKRYGVLTDTYRSVRENSKKED 259 (298)
T ss_dssp SSEEHHHHCSE-----EE----------CSSCSBCTTCTTCCCSCCCEEEEECTT-SEEEEEEECCCCEEEECC------
T ss_pred cchhhHhhhcc-----cC----------CCCCCccCCCCCCCCCceEEEEEeCCC-eeEEEEEEecCccccCCCcccccC
Confidence 01233332110 00 11223443432 36789999999987 66655433322100 011
Q ss_pred CCCCCCC--------CCCCCcccEEEEEEEe
Q 008130 549 DTALPSP--------EWSSDHIALLAEFRCK 571 (576)
Q Consensus 549 ~~~lP~~--------~~pSDH~pl~adf~~k 571 (576)
...+|.. ..+|||.||++++...
T Consensus 260 ~~~~~~~~~~~~~~~~~~SDH~PV~v~~~~~ 290 (298)
T 3mpr_A 260 VRDCPEEITIKAYEARTPSDHFPVKVELVFD 290 (298)
T ss_dssp ----------CCEEEECSSSBCCEEEEEEEC
T ss_pred cccchhhhccChhhcccCCCCCcEEEEEecc
Confidence 1122221 2579999999998753
No 10
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.93 E-value=1.7e-25 Score=222.97 Aligned_cols=240 Identities=16% Similarity=0.168 Sum_probs=141.4
Q ss_pred CcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhh-------------HHHHHHHH
Q 008130 252 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDH-------------FEEFFAPE 318 (576)
Q Consensus 252 ~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~-------------~~~~l~~~ 318 (576)
+.||||||||.+.. ...+..|...|+++|..++|||||||||+... +...+...
T Consensus 2 ~~l~v~t~Ni~~~~-------------~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~ 68 (266)
T 3teb_A 2 NAMKILTVNVHAWL-------------EENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLET 68 (266)
T ss_dssp -CEEEEEEECCTTC-------------STTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHH
T ss_pred CceEEEEEeccccc-------------CcchhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHH
Confidence 57999999998642 12478889999999999999999999996322 33335667
Q ss_pred HhhcC---CeEEEecc---CCeeeeecccccccccccCcccc---cccccccccCcEEEEEEEeeeecCCCCCCCCCCce
Q 008130 319 LDKHG---YQALYKRK---TNEVEFNKAAQSLTDAILPSAQK---KNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQL 389 (576)
Q Consensus 319 L~~~G---Y~~~~~~k---~~~i~f~~~~ls~~~~~~~~~~~---~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~ 389 (576)
|++.| |..++... .....++...+++.+........ ..... ....+.++.+.++. .++.
T Consensus 69 l~~~~~~~y~~~~~~~~~~~~~~~~g~ailsr~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~-----------~~~~ 136 (266)
T 3teb_A 69 LQKYTDTDYYLHWSNSHIGFGKYNEGVAVITRHKIKAEDEFYCTFAQSVR-TISARRIVSITINY-----------EGQD 136 (266)
T ss_dssp HTTTCCSCCEEEEEEEEECSTTEEEEEEEEESSCCSEEEEEECSSCCCTT-CTTCCEEEEEEEEE-----------TTEE
T ss_pred HHHhCCCCeEEEEeccccCccccCCeEEEEECceecCceeEEeCCCCCCC-CcccceEEEEEEEe-----------CCeE
Confidence 77665 77553221 11111223333333221100000 00000 01234555555553 3678
Q ss_pred EEEEeeecccCCCchhhHHHHHHHHHHHHHHHhhcCCCCEEEEecCCCCC--CChhhHhhhcCCCCCCCCCCCCCCCCCc
Q 008130 390 LCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVP--GSAPHALLAMGKVEPVHPDLAVDPLTIL 467 (576)
Q Consensus 390 l~V~NTHL~~~p~~~~vRl~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p--~S~~~~lL~~g~v~~~h~d~~~~~~~~~ 467 (576)
|.|+||||.+.+.....|..|+..|++.+++ +.|+|||||||+.| ++..|+.|....
T Consensus 137 ~~v~~~Hl~~~~~~~~~r~~q~~~l~~~~~~-----~~~~il~GDfN~~~~~~~~~~~~l~~~~---------------- 195 (266)
T 3teb_A 137 IEFYSCHMNLPNCETEDMGKNIQTILNRTQN-----SNLKILMGDFNTDAIGNVAAYENILSQG---------------- 195 (266)
T ss_dssp EEEEEEECCCTTCTTCCHHHHHHHHHTSSCS-----CCEEEEEEECCCCTTTCHHHHHHHHTTT----------------
T ss_pred EEEEEecCCCccCChHHHHHHHHHHHHHHhc-----CCcEEEEeECCCCCCCCCcHHHhhcccc----------------
Confidence 9999999988765667899999888877654 56999999999999 888898776421
Q ss_pred CCCcccccCCCcchhhhhhhhhccCCccccccccCCCCCCCCccccc-cCccCcceeEEEeeCCCcceeeccccCChhhh
Q 008130 468 RPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHC-TRDFIGTLDYIFYTADSLSVESLLELLDEDSL 546 (576)
Q Consensus 468 ~~~~~l~h~~~L~Say~~~~~~~~g~g~~~~~~~~~~~~~~p~fTn~-t~~f~~~IDYIf~s~~~l~v~~~l~~~~~~~~ 546 (576)
|.++|...... ..++ +-...+..| ......+|||||++++ +.+.......+
T Consensus 196 -----------l~d~~~~~~~~--~~~~----------t~~~~~~~~~~~~~~~riD~i~~s~~-~~~~~~~v~~~---- 247 (266)
T 3teb_A 196 -----------LFDTYVMAEKK--DDGI----------TVDKSIHGWDNDKAKKRLDYIFSNKE-LKVKESKVIFN---- 247 (266)
T ss_dssp -----------CEEHHHHCSEE--CCCC----------CEECC------CTTEECCEEEEESSC-CCEEEEEEESS----
T ss_pred -----------ccchHHhhccc--cCCc----------cccCccCCcCcCCcCCeeEEEEeCCC-eEEEEEEEEeC----
Confidence 12233221100 0000 000111122 1234579999999986 55544332221
Q ss_pred ccCCCCCCCCCCCCcccEEEEEEE
Q 008130 547 RKDTALPSPEWSSDHIALLAEFRC 570 (576)
Q Consensus 547 ~~~~~lP~~~~pSDH~pl~adf~~ 570 (576)
......+|||+||+++|++
T Consensus 248 -----~~~~~~~SDH~Pv~~~l~l 266 (266)
T 3teb_A 248 -----NKNKEIVSDHFGIEVKIEF 266 (266)
T ss_dssp -----SSSSCCCSSSCEEEEEECC
T ss_pred -----CCCCCCcCCccCEEEEEEC
Confidence 1113468999999999964
No 11
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.93 E-value=1.8e-25 Score=227.90 Aligned_cols=179 Identities=15% Similarity=0.107 Sum_probs=110.4
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCccccCH--HHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHh-hcCCeE
Q 008130 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSW--AYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGYQA 326 (576)
Q Consensus 250 ~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w--~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~-~~GY~~ 326 (576)
.+..||||||||+.... ..+ + .| +.|.+.|.++|...+|||||||||......+.+...|. .++|..
T Consensus 7 ~~~~lrv~t~Ni~~~~~---~~~---~----~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~ 76 (301)
T 1zwx_A 7 YPGNFKITSHNVYLFSR---NIY---P----NWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQT 76 (301)
T ss_dssp CCCSCEEEEEEEEECCT---TTS---T----TSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEEC
T ss_pred CCCceEEEEEECccCCc---ccc---C----CCCHHHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHHhhcCCccc
Confidence 45689999999998531 111 1 24 78999999999999999999999976543233344444 344432
Q ss_pred EEeccC--C------------eeeeecccccccccccCcccccc-cc-cccccCcEEEEEEEeeeecCCCCCCCCCCceE
Q 008130 327 LYKRKT--N------------EVEFNKAAQSLTDAILPSAQKKN-AL-NRLVKDNVALIVVLEAKFSNQGADTPGKRQLL 390 (576)
Q Consensus 327 ~~~~k~--~------------~i~f~~~~ls~~~~~~~~~~~~~-~~-~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l 390 (576)
.+.... + ...++...+++.+.......... .. ......+.++.+.++. .++.|
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~~~~~G~ailSr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-----------~g~~~ 145 (301)
T 1zwx_A 77 PVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQRGGGADRLSNKGFAYVKIMK-----------NGKPY 145 (301)
T ss_dssp CCTTSCSTTCSEEEC-----CCBCCCCEEEESSCEEEEEEEECSCCCGGGGGBCCEEEEEEEEE-----------TTEEE
T ss_pred cccCCccccccccccccccccccCCCEEEEecCCcccceEEEecCCCCcccccCCCeEEEEEEE-----------CCEEE
Confidence 222110 0 00122333343332110000000 00 0011235566666664 36789
Q ss_pred EEEeeecccCC------CchhhHHHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChhhHhhhc
Q 008130 391 CVANTHVNVHQ------ELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAM 449 (576)
Q Consensus 391 ~V~NTHL~~~p------~~~~vRl~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~~~lL~~ 449 (576)
.|+||||.+.. .....|..|+..|.+++++.....+.|+|||||||+.|++..|+.|..
T Consensus 146 ~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~~~~~~l~~ 210 (301)
T 1zwx_A 146 HIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYHDMLK 210 (301)
T ss_dssp EEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSHHHHHHHH
T ss_pred EEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCcHHHHHHHH
Confidence 99999996542 245689999999999998763234579999999999999999987764
No 12
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.91 E-value=3.9e-24 Score=221.45 Aligned_cols=179 Identities=13% Similarity=0.079 Sum_probs=112.6
Q ss_pred CCCCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhh-cCCeEE
Q 008130 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDK-HGYQAL 327 (576)
Q Consensus 249 ~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~-~GY~~~ 327 (576)
..+..||||||||++..+.. .....|..|.+.|..+|...+|||||||||+.....+.+...|.+ ++|...
T Consensus 25 ~~~~~lrV~T~Ni~~~~~~~--------~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L~~~~py~~~ 96 (317)
T 3i41_A 25 KDDTDLKLVSHNVYMLSTVL--------YPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTP 96 (317)
T ss_dssp ---CCCCEEEEEEEECCTTT--------STTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECC
T ss_pred CCCCceEEEEEecccCcccc--------CCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHHHHhCCcccc
Confidence 35678999999999853221 112358999999999999999999999999765433334445543 454421
Q ss_pred EeccCC------eeee--------ecccccccccccCcccccccccc-----cccCcEEEEEEEeeeecCCCCCCCCCCc
Q 008130 328 YKRKTN------EVEF--------NKAAQSLTDAILPSAQKKNALNR-----LVKDNVALIVVLEAKFSNQGADTPGKRQ 388 (576)
Q Consensus 328 ~~~k~~------~i~f--------~~~~ls~~~~~~~~~~~~~~~~r-----~~~d~val~~~Le~~~~~~~~~~~~~g~ 388 (576)
+..... ...| +...+|+.+.... ....+.+ ....+.++.+.++. .++
T Consensus 97 ~~g~~~~~~~~~~~~y~~~~~~~~G~~ilSr~Pi~~~---~~~~~~~~~~~d~~~~r~~~~~~i~~-----------~g~ 162 (317)
T 3i41_A 97 VLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEK---IQHVFKSGCGFDNDSNKGFVYTKIEK-----------NGK 162 (317)
T ss_dssp CTTSCSTTCSEEEESCCSSCSBCCCCEEEESSCEEEE---EEEECSCCCSSGGGBCCEEEEEEEEE-----------TTE
T ss_pred cCCccccCccCcccccccccccCCccEEEeCCCCccc---eeEECCCCCCcccccCcceEEEEEEE-----------CCE
Confidence 111110 0011 2233343332110 0000110 01234455555543 367
Q ss_pred eEEEEeeecccCCC------chhhHHHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChhhHhhhc
Q 008130 389 LLCVANTHVNVHQE------LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAM 449 (576)
Q Consensus 389 ~l~V~NTHL~~~p~------~~~vRl~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~~~lL~~ 449 (576)
.|.|+||||.+... ....|..|+..|.++|++.....+.|+|||||||+.|++..|+.|..
T Consensus 163 ~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s~~~~~l~~ 229 (317)
T 3i41_A 163 NVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLK 229 (317)
T ss_dssp EEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTSHHHHHHHH
T ss_pred EEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCeEEEEeECCCCCCCHHHHHHHH
Confidence 89999999976432 36789999999999998863334679999999999999999998875
No 13
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.90 E-value=3.9e-23 Score=210.81 Aligned_cols=179 Identities=15% Similarity=0.130 Sum_probs=106.9
Q ss_pred CCCCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhh-cCCe--
Q 008130 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDK-HGYQ-- 325 (576)
Q Consensus 249 ~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~-~GY~-- 325 (576)
+.+..||||||||+.... ..+ +.| ..+.|.+.+...|...+|||||||||......+.+...|.+ ++|.
T Consensus 5 ~~~~~lrv~t~Ni~~~~~---~~~---~~~--~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~~ 76 (306)
T 2ddr_A 5 TQNDTLKVMTHNVYMLST---NLY---PNW--GQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTA 76 (306)
T ss_dssp --CCEEEEEEEEEEECCT---TTC---TTS--CHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEECC
T ss_pred cCCCEEEEEEEECccCcc---ccc---CCC--CHHHHHHHHHHHhhccCCCEEEEEeecCHHHHHHHHHHHhhhCCceee
Confidence 356789999999998531 111 111 12778899988889999999999999775432333444442 3332
Q ss_pred -----------EEEecc--CCeeeeecccccccccccCccccccccc-----ccccCcEEEEEEEeeeecCCCCCCCCCC
Q 008130 326 -----------ALYKRK--TNEVEFNKAAQSLTDAILPSAQKKNALN-----RLVKDNVALIVVLEAKFSNQGADTPGKR 387 (576)
Q Consensus 326 -----------~~~~~k--~~~i~f~~~~ls~~~~~~~~~~~~~~~~-----r~~~d~val~~~Le~~~~~~~~~~~~~g 387 (576)
..+... ......+...+++.+.... ....+. .....+.++.+.++. .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~G~ailSr~pi~~~---~~~~~~~~~~~~~~~~r~~~~~~i~~-----------~g 142 (306)
T 2ddr_A 77 VLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEK---IQYVFAKGCGPDNLSNKGFVYTKIKK-----------ND 142 (306)
T ss_dssp CTTSCCSTTSSEEEESCCTTCSSCCCCEEEESSCEEEE---EEEECSCCC----CCCCEEEEEEEEE-----------TT
T ss_pred ccCcccccccccccccccccCccCCeEEEEECCCcccc---cEEEcCCCCCcchhcCCCeEEEEEEe-----------CC
Confidence 111100 0000122233333322110 000000 001245566666664 36
Q ss_pred ceEEEEeeecccCC------CchhhHHHHHHHHHHHHHHHhhcCCCCEEEEecCCCCC------CChhhHhhhc
Q 008130 388 QLLCVANTHVNVHQ------ELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVP------GSAPHALLAM 449 (576)
Q Consensus 388 ~~l~V~NTHL~~~p------~~~~vRl~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p------~S~~~~lL~~ 449 (576)
+.|.|+||||.+.. .....|..|+..|.+.+++.....+.|+|||||||+.| ++..|+.|..
T Consensus 143 ~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~~~d~~~s~~~~~l~~ 216 (306)
T 2ddr_A 143 RFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFK 216 (306)
T ss_dssp EEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCTTSHHHHHHH
T ss_pred EEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCcccccccCCHHHHHHHH
Confidence 78999999997652 34678999999999999876322456999999999999 8888876653
No 14
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.90 E-value=5.4e-23 Score=205.06 Aligned_cols=156 Identities=19% Similarity=0.178 Sum_probs=98.1
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEEeccCC
Q 008130 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (576)
Q Consensus 254 ~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k~~ 333 (576)
||||||||.+. ..|.+.|+++|...+||||||||+..... .+....|+..||..++....+
T Consensus 1 lrv~t~Nv~~~------------------~~~~~~i~~~i~~~~~Dii~LQE~~~~~~-~~~~~~l~~~gy~~~~~~~~~ 61 (268)
T 1ako_A 1 MKFVSFNINGL------------------RARPHQLEAIVEKHQPDVIGLQETKVHDD-MFPLEEVAKLGYNVFYHGQKG 61 (268)
T ss_dssp CEEEEEECSCG------------------GGCHHHHHHHHHHHCCSEEEEECCCCCGG-GCCHHHHHHTTCEEEEEEETT
T ss_pred CEEEEEehhHH------------------HHHHHHHHHHHHHcCCCEEEEEeccCChh-hCCHhHhccCCCcEEEeCCCC
Confidence 68999999852 23567899999999999999999976432 223445666799887765433
Q ss_pred eeeeecccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCC-----chhhHH
Q 008130 334 EVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQE-----LKDVKL 408 (576)
Q Consensus 334 ~i~f~~~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~-----~~~vRl 408 (576)
. ++...+++.+.......... ......+.++.+.++. .++.|.|+|||+.+... ....|.
T Consensus 62 ~--~G~ailsr~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----------~~~~~~v~~~Hl~~~~~~~~~~~~~~r~ 126 (268)
T 1ako_A 62 H--YGVALLTKETPIAVRRGFPG--DDEEAQRRIIMAEIPS-----------LLGNVTVINGYFPQGESRDHPIKFPAKA 126 (268)
T ss_dssp E--EEEEEEESSCCSEEEESSTT--CCHHHHTTEEEEEEEE-----------TTEEEEEEEEECCCCCBTTCTTHHHHHH
T ss_pred c--ceEEEEEecCcceeeeCCCC--cccccCCCEEEEEEEc-----------CCCeEEEEEEEecCCCCcccchhHHHHH
Confidence 2 22333333221110000000 0000112234555553 24579999999965432 124688
Q ss_pred HHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChhh
Q 008130 409 WQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPH 444 (576)
Q Consensus 409 ~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~~ 444 (576)
.|+..|.+.+++.. ..+.|+|||||||+.|++..+
T Consensus 127 ~~~~~l~~~~~~~~-~~~~~~Il~GDFN~~~~~~~~ 161 (268)
T 1ako_A 127 QFYQNLQNYLETEL-KRDNPVLIMGDMNISPTDLDI 161 (268)
T ss_dssp HHHHHHHHHHHHHC-CTTSCEEEEEECCCCCSGGGB
T ss_pred HHHHHHHHHHHHhh-hCCCCEEEEeECCCCCchhcc
Confidence 89999988888763 245799999999999987655
No 15
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.89 E-value=2.9e-22 Score=198.39 Aligned_cols=150 Identities=19% Similarity=0.139 Sum_probs=91.9
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEEeccCC
Q 008130 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (576)
Q Consensus 254 ~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k~~ 333 (576)
||||||||+. |..|.+.|++.|+.++||||||||+..... .+....+...||..++....+
T Consensus 1 lrv~t~Nv~~------------------~~~~~~~i~~~i~~~~~DIv~LQE~~~~~~-~~~~~~~~~~gy~~~~~~~~~ 61 (256)
T 2jc4_A 1 MKITTWNVNS------------------LNVRLPQVQNLLADNPPDILVLQELKLDQD-KFPAAALQMMGWHCVWSGQKT 61 (256)
T ss_dssp CEEEEEECSC------------------HHHHHHHHHHHHHSSCCSEEEEECCCSCGG-GSCHHHHHTTTCEEEEECCSS
T ss_pred CEEEEEEcCC------------------cHHHHHHHHHHHHhcCCCEEEEEeeccchh-cCCHhHHhhcCCeEEECCCCc
Confidence 6899999985 678889999999999999999999976543 233445666899877654322
Q ss_pred eeeeecccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCC----chhhHHH
Q 008130 334 EVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQE----LKDVKLW 409 (576)
Q Consensus 334 ~i~f~~~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~----~~~vRl~ 409 (576)
. .+...+++.+........ .........++ +. ++. + .+.|+|||+..... ....|..
T Consensus 62 ~--~G~ailsr~~~~~~~~~~-~~~~~~~~~~~-~~--~~~------------~-~~~v~~~h~~~~~~~~~~~~~~r~~ 122 (256)
T 2jc4_A 62 Y--NGVAIVSRSVPQDVHFGL-PALPDDPQRRV-IA--ATV------------S-GVRVINVYCVNGEALDSPKFKYKEQ 122 (256)
T ss_dssp S--CCEEEEESSCCEEEEESC-TTSTTCCSCCE-EE--EEE------------T-TEEEEEEECCCCCSTTSHHHHHHHH
T ss_pred c--eEEEEEECCChHHheecC-CCCccCCcCcE-EE--EEe------------C-CEEEEEEEecCCCCCCcHhHHHHHH
Confidence 1 112222222111000000 00000011222 22 221 1 48999999955432 1234677
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEecCCCCCCCh
Q 008130 410 QVHTLLKGLEKIAASADIPMLVCGDFNSVPGSA 442 (576)
Q Consensus 410 Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~ 442 (576)
|+..|.+.++++.. .+.|+|||||||+.+++.
T Consensus 123 ~~~~l~~~~~~~~~-~~~~~il~GDFN~~~~~~ 154 (256)
T 2jc4_A 123 WFAALTEFVRDEMT-RHGKLVLLGDFNIAPADA 154 (256)
T ss_dssp HHHHHHHHHHHHHT-TCSSEEEEEECCCCCSGG
T ss_pred HHHHHHHHHHHHhc-CCCCEEEEeECCCCCchh
Confidence 88888888877642 467999999999998763
No 16
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.87 E-value=1.1e-21 Score=194.66 Aligned_cols=149 Identities=15% Similarity=0.179 Sum_probs=83.6
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCccccCHHHHHH-HHHHHHhcCCCcEEEEeccchhhHHHHHHHHH-hhcCCeEEEecc
Q 008130 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQ-NLLREIIGYRADIVCLQEVQNDHFEEFFAPEL-DKHGYQALYKRK 331 (576)
Q Consensus 254 ~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~-~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L-~~~GY~~~~~~k 331 (576)
||||||||... ..+.+ .|++.|+.++||||||||+..... . +...+ ...||..++...
T Consensus 2 l~v~t~Ni~~~------------------~~~~~~~i~~~i~~~~~DIi~LQE~~~~~~-~-~~~~l~~~~gy~~~~~~~ 61 (259)
T 2jc5_A 2 LKIISANVNGI------------------RSAYKKGFYEYIAASGADIVCVQELKAQEA-D-LSADMKNPHGMHGHWHCA 61 (259)
T ss_dssp EEEEEEECSSH------------------HHHHHTTHHHHHHHTTCSEEEEECCCCCGG-G-CCHHHHSGGGCEEEEECC
T ss_pred cEEEEEeeccH------------------HHHHHhHHHHHHHhcCCCEEEEEEecchhh-c-cChhhccccCCeEEEecc
Confidence 89999999852 22223 499999999999999999976432 1 22223 356898877642
Q ss_pred CCeeeeecccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCCchhhH----
Q 008130 332 TNEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVK---- 407 (576)
Q Consensus 332 ~~~i~f~~~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vR---- 407 (576)
......+...+++.+....... ..........++ + .++. +.+.|+|+|+...... ..|
T Consensus 62 ~~~~~~G~ailsr~~~~~~~~~-~~~~~~~~~~r~-~--~~~~-------------~~~~v~~~h~~~~~~~-~~r~~~~ 123 (259)
T 2jc5_A 62 EKRGYSGVAVYSKRKPDNVQIG-MGIEEFDREGRF-V--RCDF-------------GRLSVISLYLPSGSSA-EERQQVK 123 (259)
T ss_dssp SSTTCCCEEEEESSCCSEEEES-CSCHHHHTTCCE-E--EEEE-------------TTEEEEEEECCCCTTC-HHHHHHH
T ss_pred CCCCcceEEEEEecCceeEEeC-CCCCccCCCCeE-E--EEEc-------------CCEEEEEEeccCCCCC-cHHHHHH
Confidence 1100112222232221100000 000000001221 2 1221 2489999999765432 233
Q ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCC
Q 008130 408 LWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGS 441 (576)
Q Consensus 408 l~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S 441 (576)
..|+..|.+.+++... .+.|+|||||||+.|++
T Consensus 124 ~~~~~~l~~~~~~~~~-~~~~~Il~GDFN~~~~~ 156 (259)
T 2jc5_A 124 YRFLDAFYPMLEAMKN-EGRDIVVCGDWNIAHQN 156 (259)
T ss_dssp HHHHHHHHHHHHHHHH-TCSEEEEEEECCCCCSG
T ss_pred HHHHHHHHHHHHHHHh-cCCCEEEEeeCCCCCch
Confidence 3567777777776542 35799999999999875
No 17
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.85 E-value=1.3e-20 Score=187.13 Aligned_cols=148 Identities=20% Similarity=0.254 Sum_probs=82.5
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEEeccCC
Q 008130 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTN 333 (576)
Q Consensus 254 ~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k~~ 333 (576)
||||||||.+.. .|.+.|++.|+..+||||||||+..... .+....+...||..++....+
T Consensus 2 lrv~t~Nv~g~~------------------~~~~~i~~~i~~~~~Dii~lQE~~~~~~-~~~~~~~~~~gy~~~~~~~~~ 62 (257)
T 2voa_A 2 LKIATFNVNSIR------------------SRLHIVIPWLKENKPDILCMQETKVENR-KFPEADFHRIGYHVVFSGSKG 62 (257)
T ss_dssp EEEEEEECSCGG------------------GTHHHHHHHHHHHCCSEEEEECCCCCGG-GCCHHHHHTTTCEEEEEEETT
T ss_pred eEEEEEecCChH------------------HHHHHHHHHHhhcCCCEEEEEEeecchh-hcCHHHhhhCCCcEEEcCCCC
Confidence 799999997521 2246799999999999999999965321 111223456799877653322
Q ss_pred eeeeecccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCC----chhhHHH
Q 008130 334 EVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQE----LKDVKLW 409 (576)
Q Consensus 334 ~i~f~~~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~----~~~vRl~ 409 (576)
. .+...+++.+........ ...... ..++ +.+ + + ..+.|+|+|+..... ....|..
T Consensus 63 ~--~G~ailsr~~~~~~~~~~-~~~~~~-~~r~-l~~--~--~-----------~~~~v~~~h~p~~~~~~~~~~~~r~~ 122 (257)
T 2voa_A 63 R--NGVAIASLEEPEDVSFGL-DSEPKD-EDRL-IRA--K--I-----------AGIDVINTYVPQGFKIDSEKYQYKLQ 122 (257)
T ss_dssp E--EEEEEEESSCCEEEEESC-SSSSCC-GGGE-EEE--E--E-----------TTEEEEEEECCCCSCTTSHHHHHHHH
T ss_pred c--cEEEEEEccChHHheecC-CCCccc-cCcE-EEE--E--E-----------CCEEEEEEEeCCCCCCCcHHHHHHHH
Confidence 1 122222322211000000 000000 1122 222 2 1 148999999954322 1123445
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEecCCCCCCC
Q 008130 410 QVHTLLKGLEKIAASADIPMLVCGDFNSVPGS 441 (576)
Q Consensus 410 Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S 441 (576)
|+..|.+.+++.. ..+.|+|||||||+.|.+
T Consensus 123 ~~~~l~~~~~~~~-~~~~p~Il~GDFN~~~~~ 153 (257)
T 2voa_A 123 WLERLYHYLQKTV-DFRSFAVWCGDMNVAPEP 153 (257)
T ss_dssp HHHHHHHHHHHHC-CTTSCEEEEEECSCCCSG
T ss_pred HHHHHHHHHHHHh-cCCCCEEEEeeCCCCCch
Confidence 6677777776653 235799999999998875
No 18
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.84 E-value=6.9e-20 Score=185.18 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=84.1
Q ss_pred CCCCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHH-HHHHHHhcCCCcEEEEeccchhhHHHHHHHHHh-hcCC-e
Q 008130 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQ-NLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGY-Q 325 (576)
Q Consensus 249 ~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~-~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~-~~GY-~ 325 (576)
.....||||||||.... .+.+ .|++.|..++||||||||+..... . +...|. ..|| .
T Consensus 24 ~~~~~l~v~t~Ni~~~~------------------~~~~~~i~~~i~~~~~DIi~LQE~~~~~~-~-~~~~l~~~~gy~~ 83 (285)
T 2o3h_A 24 GKPATLKIASWNVDGLR------------------AWIKKKGLDWVKEEAPDILCLQETKCSEN-K-LPAELQELPGLSH 83 (285)
T ss_dssp SCBCCEEEEEEECSSHH------------------HHHHTTHHHHHHHHCCSEEEEECCCCCTT-S-CCGGGGGCGGGCE
T ss_pred CCccceEEEEEecccCh------------------hhhhhhHHHHHHhcCCCEEEEEEeecchh-h-ccHHHHhccCCcE
Confidence 35568999999998521 1112 389999999999999999976421 1 122233 4688 4
Q ss_pred EEEec-cCCeeeeecccccccccccCcccc-cccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCC-
Q 008130 326 ALYKR-KTNEVEFNKAAQSLTDAILPSAQK-KNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQE- 402 (576)
Q Consensus 326 ~~~~~-k~~~i~f~~~~ls~~~~~~~~~~~-~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~- 402 (576)
.++.. ......++...+++.+.+...... ..... ...++ + .++ .+.+.|+|+|+.....
T Consensus 84 ~~~~~~~~~~g~~Gvailsr~~~~~~~~~~~~~~~~--~~~r~-l--~~~-------------~~~~~v~~~h~p~~~~~ 145 (285)
T 2o3h_A 84 QYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHD--QEGRV-I--VAE-------------FDSFVLVTAYVPNAGRG 145 (285)
T ss_dssp EEEECBC--CCSCCEEEEESSCCSEEEESCSCGGGS--SBCCE-E--EEE-------------CSSCEEEEEECCCCCGG
T ss_pred EEEecccCCcccceEEEEEccChHHeeeccCCcccC--CCCcE-E--EEE-------------eCCEEEEEEEcCCCCCc
Confidence 44443 110001122223322211000000 00000 11222 1 112 1248999999943321
Q ss_pred --chhhHHHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCC
Q 008130 403 --LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPG 440 (576)
Q Consensus 403 --~~~vRl~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~ 440 (576)
....|..|+..|.+.++++.. ..|+|||||||..+.
T Consensus 146 ~~~~~~r~~~~~~l~~~l~~~~~--~~p~Il~GDFN~~~~ 183 (285)
T 2o3h_A 146 LVRLEYRQRWDEAFRKFLKGLAS--RKPLVLCGDLNVAHE 183 (285)
T ss_dssp GTTHHHHHHHHHHHHHHHHHHHT--TSCEEEEEECSCCCS
T ss_pred chhHHHHHHHHHHHHHHHHhhcc--CCCEEEEEECCCCCc
Confidence 123477888888888887653 369999999998765
No 19
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.83 E-value=6.1e-20 Score=183.95 Aligned_cols=242 Identities=15% Similarity=0.190 Sum_probs=126.6
Q ss_pred cEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHH-HHHHHHhcCCCcEEEEeccchhhHHHHHHHHHh-hcCCeEEEec
Q 008130 253 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQ-NLLREIIGYRADIVCLQEVQNDHFEEFFAPELD-KHGYQALYKR 330 (576)
Q Consensus 253 ~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~-~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~-~~GY~~~~~~ 330 (576)
.|||+||||.+. ..+.+ .++++|+..+||||||||+..... .+ ...+. ..||..++..
T Consensus 3 ~l~i~s~Nv~g~------------------~~~~~~~l~~~i~~~~~DIv~LQEt~~~~~-~~-~~~~~~~~gy~~~~~~ 62 (265)
T 3g91_A 3 VLKIISWNVNGL------------------RAVHRKGFLKWFMEEKPDILCLQEIKAAPE-QL-PRKLRHVEGYRSFFTP 62 (265)
T ss_dssp EEEEEEEECSCH------------------HHHHHHTHHHHHHHHCCSEEEEECCCSCGG-GS-CHHHHCCTTCEEEEEC
T ss_pred ccEEEEEEcCCc------------------hhhhhhhHHHHHHhcCCCEEEEEecccccc-cc-ChhhhcccCCcEEEcc
Confidence 689999999762 22222 589999999999999999965431 22 22233 5799977764
Q ss_pred cCCeeeeecccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCCc---hhhH
Q 008130 331 KTNEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQEL---KDVK 407 (576)
Q Consensus 331 k~~~i~f~~~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~~---~~vR 407 (576)
.......+...+++.+........ .........++ ..++. ..+.|+|+|+...... ...|
T Consensus 63 ~~~~~~~Gvail~k~~~~~~~~~~-~~~~~d~~gr~---i~~~~-------------~~~~i~~vy~p~~~~~~~~~~~r 125 (265)
T 3g91_A 63 AERKGYSGVAMYTKVPPSSLREGF-GVERFDTEGRI---QIADF-------------DDFLLYNIYFPNGAMSEERLKYK 125 (265)
T ss_dssp BSSTTSCCEEEEESSCCSEEECCC-SCHHHHSBSCE---EEEEC-------------SSCEEEEEECCCCTTCHHHHHHH
T ss_pred CCCCCcCEEEEEEecChHHhccCC-CCcccCCcCCE---EEEEe-------------CCEEEEEEEecCCCCCchhHHHH
Confidence 421100112222222110000000 00000001121 11221 2488999999543321 2346
Q ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCChhhHhhhcCCCCCCCCCCCCCCCCCcCCCcccccCCCcchhhhhhh
Q 008130 408 LWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFA 487 (576)
Q Consensus 408 l~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S~~~~lL~~g~v~~~h~d~~~~~~~~~~~~~~l~h~~~L~Say~~~~ 487 (576)
..++..|.+.++++.. .+.|+|||||||+.+...-. ..+....+..+.. ......+.
T Consensus 126 ~~~~~~l~~~~~~~~~-~~~~~ii~GDfN~~~~~~d~----------~~~~~~~~~~~~~------------~~~~~~~~ 182 (265)
T 3g91_A 126 LEFYDAFLEDVNRERD-SGRNVIICGDFNTAHREIDL----------ARPKENSNVSGFL------------PVERAWID 182 (265)
T ss_dssp HHHHHHHHHHHHHHHH-TTCCEEEEEECCCCCSGGGB----------SCTGGGTTSTTSC------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCCCEEEECccccCCchhhc----------cCHhhcCCCCccC------------HHHHHHHH
Confidence 6777778888877654 35699999999999874210 0000000000000 00111121
Q ss_pred hhccCCccccccccCCCCCCCCccccccC-------ccCcceeEEEeeCCCc-ceeeccccCChhhhccCCCCCCCCCCC
Q 008130 488 RIGVGLGMEHQRRRMDPTTNEPLFTHCTR-------DFIGTLDYIFYTADSL-SVESLLELLDEDSLRKDTALPSPEWSS 559 (576)
Q Consensus 488 ~~~~g~g~~~~~~~~~~~~~~p~fTn~t~-------~f~~~IDYIf~s~~~l-~v~~~l~~~~~~~~~~~~~lP~~~~pS 559 (576)
.+ .+.|+.+..+.+.+.. ..||+|.. +.+.||||||++++.+ .+.... +.. ...+|
T Consensus 183 ~l-~~~gl~D~~r~~~p~~--~~yT~~~~~~~~~~~~~~~rID~il~s~~~~~~~~~~~-i~~------------~~~~S 246 (265)
T 3g91_A 183 KF-IENGYVDTFRMFNSDP--GQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSW-ILS------------DVMGS 246 (265)
T ss_dssp HH-HHTTEEETHHHHCCCS--CCCSBCCSSTTTTTTTCCBCCEEEEEEGGGGGGEEEEE-ECT------------TCCSS
T ss_pred HH-HhcCcEEeeHhhCCCC--CCCCCcCCCCCccccCceEEEEEEEECHHHHhhhcEEE-EeC------------CCCCC
Confidence 22 2445566655555432 37888743 2345999999998732 222211 110 12479
Q ss_pred CcccEEEEEEE
Q 008130 560 DHIALLAEFRC 570 (576)
Q Consensus 560 DH~pl~adf~~ 570 (576)
||.||+++|.-
T Consensus 247 DH~Pv~~~~~~ 257 (265)
T 3g91_A 247 DHCPIGLEIEL 257 (265)
T ss_dssp SBCCEEEEEEC
T ss_pred CcceEEEEhhh
Confidence 99999999864
No 20
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.83 E-value=4.2e-20 Score=180.56 Aligned_cols=149 Identities=19% Similarity=0.234 Sum_probs=82.4
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEEe
Q 008130 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 329 (576)
Q Consensus 250 ~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~ 329 (576)
....||||||||.+.. ...|++.|++.|+.++||||||||+..... .+ +.+...||..+|.
T Consensus 4 ~~~~lri~t~Nv~g~~----------------~~~~~~~~~~~i~~~~~DIv~LQE~~~~~~--~~-~~l~~~~y~~~~~ 64 (238)
T 1vyb_A 4 SNSHITILTLNINGLN----------------SAIKRHRLASWIKSQDPSVCCIQETHLTCR--DT-HRLKIKGWRKIYQ 64 (238)
T ss_dssp CCCCEEEEEEECSCCC----------------SHHHHHHHHHHHHHHCCSEEEEECCCCCTT--SG-GGCCCTTCCEEEE
T ss_pred CCCcceEEEEecccCC----------------chhhHHHHHHHHHHcCCCEEEEecccCCCC--Cc-hhHhhCCCCeEEE
Confidence 3457999999997521 245678899999999999999999964321 11 2233458887654
Q ss_pred ccCCeeeeecccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCCchhhHHH
Q 008130 330 RKTNEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLW 409 (576)
Q Consensus 330 ~k~~~i~f~~~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vRl~ 409 (576)
........+...+++.+...... . .......+. +.+.++. .++.+.|+|+|+.... ..|
T Consensus 65 ~~~~~~~~Gvail~r~~~~~~~~--~--~~~~~~~r~-i~~~~~~-----------~~~~~~v~~~y~p~~~---~~~-- 123 (238)
T 1vyb_A 65 ANGKQKKAGVAILVSDKTDFKPT--K--IKRDKEGHY-IMVKGSI-----------QQEELTILNIYAPNTG---APR-- 123 (238)
T ss_dssp ECCSSSSCCEEEEECTTCCCEEE--E--EEECTTSSE-EEEEEEE-----------TTEEEEEEEEECCSSS---HHH--
T ss_pred ccCCCCCceEEEEEeCCCCcccc--c--eeEcCCCcE-EEEEEEe-----------CCCcEEEEEEecCCCC---cHH--
Confidence 32111011222222221100000 0 000011232 2233332 3567999999995432 122
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEecCCCCCCC
Q 008130 410 QVHTLLKGLEKIAASADIPMLVCGDFNSVPGS 441 (576)
Q Consensus 410 Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S 441 (576)
++..+++.|++. .+.|+|||||||+.+.+
T Consensus 124 ~~~~l~~~l~~~---~~~~~Il~GDFN~~~~~ 152 (238)
T 1vyb_A 124 FIKQVLSDLQRD---LDSHTLIMGDFNTPLST 152 (238)
T ss_dssp HHHHHHHHTTTT---CCTTEEEEEECSSCSSG
T ss_pred HHHHHHHHHHhc---cCCCEEEEccCCCCCCc
Confidence 344444444432 35799999999998764
No 21
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.83 E-value=9.6e-20 Score=188.20 Aligned_cols=155 Identities=17% Similarity=0.174 Sum_probs=81.5
Q ss_pred CCCCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHH-hhcCC-eE
Q 008130 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPEL-DKHGY-QA 326 (576)
Q Consensus 249 ~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L-~~~GY-~~ 326 (576)
.....||||||||.+.. ... .+.|+++|..++||||||||+..... . +...| ...|| ..
T Consensus 57 ~~~~~lrv~t~Nv~g~~----------------~~~-~~~i~~~i~~~~~DIi~LQE~~~~~~-~-~~~~l~~~~gy~~~ 117 (318)
T 1hd7_A 57 GKPATLKICSWNVDGLR----------------AWI-KKKGLDWVKEEAPDILCLQETKCSEN-K-LPAELQELPGLSHQ 117 (318)
T ss_dssp SCBCCEEEEEEECSSHH----------------HHH-HTTHHHHHHHHCCSEEEEECCCCCC-------------CCCEE
T ss_pred CCCCceEEEEEecCcch----------------hhh-hhhHHHHHHhhCCCEEEEEEccCchh-h-ccHHHHhcCCCceE
Confidence 35568999999998521 011 12389999999999999999976421 1 12223 25689 44
Q ss_pred EEec-cCCeeeeecccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCC---
Q 008130 327 LYKR-KTNEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQE--- 402 (576)
Q Consensus 327 ~~~~-k~~~i~f~~~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~--- 402 (576)
++.. ......++...+++.+.+...... .........++ +. ++. ..|.|+|+|+.....
T Consensus 118 ~~~~~~~~~g~~Gvailsr~~~~~~~~~~-~~~~~~~~~r~-l~--~~~-------------~~~~v~~vh~p~~~~~~~ 180 (318)
T 1hd7_A 118 YWSAPSDKEGYSGVGLLSRQCPLKVSYGI-GDEEHDQEGRV-IV--AEF-------------DSFVLVTAYVPNAGRGLV 180 (318)
T ss_dssp EEECC-----CCCEEEEESSCCSEEEESC-SCGGGSSSSCE-EE--EEC-------------SSCEEEEEECCCCCGGGT
T ss_pred EEecCCCCCccceEEEEEcCCceeEEecC-CCcccCCCCcE-EE--EEc-------------CCEEEEEEEcCCCCCccc
Confidence 4443 110001122233332211000000 00000011222 21 221 248999999943221
Q ss_pred chhhHHHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCCC
Q 008130 403 LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGS 441 (576)
Q Consensus 403 ~~~vRl~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~S 441 (576)
....|..|+..|.+.++++... .|+|||||||+.+.+
T Consensus 181 ~~~~r~~~~~~l~~~l~~~~~~--~pvIl~GDFN~~~~~ 217 (318)
T 1hd7_A 181 RLEYRQRWDEAFRKFLKGLASR--KPLVLCGDLNVAHEE 217 (318)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH--SCEEEEEECSCCCSG
T ss_pred cHHHHHHHHHHHHHHHHhcccC--CCEEEEeeCCCCChh
Confidence 1234778888888888876432 689999999998764
No 22
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.81 E-value=2.4e-19 Score=194.71 Aligned_cols=63 Identities=16% Similarity=0.300 Sum_probs=42.9
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHH-HHHHHHHhcCCCcEEEEeccchhh--HHHHHHHHHh-hcCCe
Q 008130 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRR-QNLLREIIGYRADIVCLQEVQNDH--FEEFFAPELD-KHGYQ 325 (576)
Q Consensus 250 ~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~-~~I~~eI~~~~aDIIcLQEV~~~~--~~~~l~~~L~-~~GY~ 325 (576)
....||||||||.... .|..|. +.|+++|..++||||||||+.... +.. ...|+ ..||.
T Consensus 146 ~~~~LKI~TwNVnGl~---------------~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~~--~~~la~~~GY~ 208 (467)
T 2j63_A 146 PSRMYKFITWNVAGLR---------------GLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADA--NATLGVVDGYS 208 (467)
T ss_dssp TTTEEEEEEEECSCHH---------------HHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHH--HHTSSCCTTEE
T ss_pred CCCCeEEEEEEcCCCc---------------ccccccHHHHHHHHHHcCCCEEEEEecccchhccch--HHHHhhcCCce
Confidence 3467999999998621 122332 579999999999999999996432 211 12244 46898
Q ss_pred EEEe
Q 008130 326 ALYK 329 (576)
Q Consensus 326 ~~~~ 329 (576)
.++.
T Consensus 209 ~~~~ 212 (467)
T 2j63_A 209 FVDH 212 (467)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7765
No 23
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.77 E-value=3.1e-18 Score=171.55 Aligned_cols=158 Identities=16% Similarity=0.218 Sum_probs=85.8
Q ss_pred EEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhc--CCCcEEEEeccchhh---HHHHHHHHHhh---cCCe
Q 008130 254 FSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIG--YRADIVCLQEVQNDH---FEEFFAPELDK---HGYQ 325 (576)
Q Consensus 254 ~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~--~~aDIIcLQEV~~~~---~~~~l~~~L~~---~GY~ 325 (576)
||||||||.... . -..|...+++.|.. .+|||||||||+... +.+ +...|.. .+|.
T Consensus 1 lrv~s~NI~~~g--~-------------~~~~~~~~~~~i~~~~~~~DIv~LQEv~~~~~~~~~~-l~~~L~~~~~~~y~ 64 (260)
T 2a40_B 1 LKIAAFNIRTFG--E-------------TKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGK-LLDYLNQDDPNTYH 64 (260)
T ss_dssp CEEEEEEEEEES--H-------------HHHHSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHH-HHHHHTSSSTTSCE
T ss_pred CEEEEEehhhhC--C-------------CccchHHHHHHHHHHhccCCEEEEEEEEcCchhHHHH-HHHHHHhccCCCcE
Confidence 689999998621 0 11233444444443 289999999998632 333 3455542 2477
Q ss_pred EEEeccCC--------eeeeecccccccccc-cCcc---cccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEE
Q 008130 326 ALYKRKTN--------EVEFNKAAQSLTDAI-LPSA---QKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVA 393 (576)
Q Consensus 326 ~~~~~k~~--------~i~f~~~~ls~~~~~-~~~~---~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~ 393 (576)
.+.....+ .+.|++..+...... .+.. .....+. +..+++.++.. ...++.|.|+
T Consensus 65 ~v~~~~~~~~~~~~~~~~ly~~~~v~~~~~~~~~~~~~~~~~~~~~-----R~p~~~~~~~~--------~~~g~~~~vi 131 (260)
T 2a40_B 65 YVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFS-----REPAVVKFSSH--------STKVKEFAIV 131 (260)
T ss_dssp EEECCCBCSSSCCBEEEEEECTTTCEEEEEEECCTTSTTTHHHHCS-----SCCEEEEEECT--------TSSSSEEEEE
T ss_pred EEEcccCCCCCCcEEEEEEEcCceeEecCceeccCCCcCCCCCcee-----eCCEEEEEEeC--------CCCCceEEEE
Confidence 66544311 145555544332211 1000 0011111 23344444431 0126789999
Q ss_pred eeecccCCCchhhHHHHHHHHHHHHHHHhh-cCCCCEEEEecCCCCCC---ChhhH
Q 008130 394 NTHVNVHQELKDVKLWQVHTLLKGLEKIAA-SADIPMLVCGDFNSVPG---SAPHA 445 (576)
Q Consensus 394 NTHL~~~p~~~~vRl~Q~~~L~~~L~~~~~-~~~~pvIl~GDFNs~p~---S~~~~ 445 (576)
|+||.+.. +..|++.|.+.++.+.+ ..+.|+|||||||+.+. +..++
T Consensus 132 ~~Hl~~~~-----~~~q~~~l~~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~~ 182 (260)
T 2a40_B 132 ALHSAPSD-----AVAEINSLYDVYLDVQQKWHLNDVMLMGDFNADCSYVTSSQWS 182 (260)
T ss_dssp ECCCCGGG-----HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCSTTTSCGGGGG
T ss_pred EecCCCCC-----cHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCcccccchhh
Confidence 99996432 23466666666655432 23579999999999887 54444
No 24
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.77 E-value=2.9e-18 Score=169.89 Aligned_cols=145 Identities=14% Similarity=0.144 Sum_probs=74.9
Q ss_pred CCCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHHHHHHhhcCCeEEEe
Q 008130 250 STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYK 329 (576)
Q Consensus 250 ~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~ 329 (576)
....||||||||... ..+...+++.|...+||||||||+........ . ...||..++.
T Consensus 16 ~~~~lri~s~Nv~~~------------------~~~~~~l~~~i~~~~~DIv~lQE~~~~~~~~~---~-~~~gy~~~~~ 73 (245)
T 1wdu_A 16 NGPPYRVLQANLQRK------------------KLATAELAIEAATRKAAIALIQEPYVGGAKSM---K-GFRGVRVFQS 73 (245)
T ss_dssp --CCEEEEEEECTTC------------------HHHHHHHHHHHHHHTCSEEEEESCCC---------C-CCSSCEEEEC
T ss_pred cCcceeeeeeecccc------------------HHHHHHHHHHHhhcCCCEEEEEcccccCCccc---c-CCCcceEecc
Confidence 345799999999863 23566799999999999999999976432211 1 1358865543
Q ss_pred ccCCeeeeecccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCCchhhHHH
Q 008130 330 RKTNEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLW 409 (576)
Q Consensus 330 ~k~~~i~f~~~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vRl~ 409 (576)
.....-..+.+.+++...+. ... ... ...+-.+.+.++. .++.+.|+|+|+..... ......
T Consensus 74 ~~~~~~~~GvaIl~~~~~~~-~~~----~~~-~~~~~~~~~~i~~-----------~~~~~~v~~vy~p~~~~-~~~~~~ 135 (245)
T 1wdu_A 74 TAQGDGTVKAAIAVFDHDLD-VIQ----YPQ-LTTNNIVVVGIRT-----------RAWEITLVSYYFEPDKP-IESYLE 135 (245)
T ss_dssp CCCTTCCCCEEEEECCSSCE-EEE----CTT-TCCSSEEEEEEEC-----------SSCEEEEEEEECCTTSC-SHHHHH
T ss_pred ccccCCCCCeEEEEECCCcc-eEE----ecc-cccCCEEEEEEEc-----------CCCcEEEEEEEeCCCCC-HHHHHH
Confidence 21110001112222111100 000 000 1112233444443 24569999999964322 122233
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEecCCCCCC
Q 008130 410 QVHTLLKGLEKIAASADIPMLVCGDFNSVPG 440 (576)
Q Consensus 410 Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~ 440 (576)
|+..+ ++.+ .+.|+|||||||+.+.
T Consensus 136 ~l~~~---~~~~---~~~~~Ii~GDfN~~~~ 160 (245)
T 1wdu_A 136 QIKRV---ERKM---GPKRLIFGGDANAKST 160 (245)
T ss_dssp HHHHH---HHTT---CSSSEEEEEECCCCCG
T ss_pred HHHHH---HHHh---CCCcEEEEeccccCcc
Confidence 33332 2222 3469999999998764
No 25
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.67 E-value=4.8e-16 Score=154.59 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=31.8
Q ss_pred cEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcEEEEeccc
Q 008130 253 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQ 307 (576)
Q Consensus 253 ~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~ 307 (576)
.+||+||||... ..|.+.++++|...+||||||||+.
T Consensus 7 ~mki~s~Nvn~~------------------r~~~~~l~~~l~~~~~DIl~LQEt~ 43 (240)
T 2ei9_A 7 RLRIGQINLGGA------------------EDATRELPSIARDLGLDIVLVQEQY 43 (240)
T ss_dssp EEEEEEEECTTC------------------HHHHHTHHHHHHHHTCSEEEEESCC
T ss_pred cceEEEEecCcc------------------HHHHHHHHHHHHHcCCCEEEeecce
Confidence 599999999873 2456679999999999999999994
No 26
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.67 E-value=1e-16 Score=163.31 Aligned_cols=166 Identities=13% Similarity=0.066 Sum_probs=93.4
Q ss_pred CCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCcE--EEEeccchhh--------HHHHHHHHHh
Q 008130 251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADI--VCLQEVQNDH--------FEEFFAPELD 320 (576)
Q Consensus 251 ~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDI--IcLQEV~~~~--------~~~~l~~~L~ 320 (576)
.-.|+||||||...... . .-.+| +..|...+||| |||||+.... +.+.+...|.
T Consensus 6 ~~~i~V~T~Nv~~~~~~-~--------~l~~w-------l~~~~~~~pDI~viglQEv~~~~~~~~~~~~w~~~l~~~L~ 69 (282)
T 2imq_X 6 QLSVHTVSWNSGHERAP-T--------NLEEL-------LGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLT 69 (282)
T ss_dssp EEEEEEEEEEEETCCCC-S--------CCHHH-------HTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHH
T ss_pred CcEEEEEEEeCCCCcCc-h--------hHHHH-------hcccccCCCCEEEEEeeeeccccccchhhHHHHHHHHHhcC
Confidence 34799999999864310 0 11122 22345789996 5999997542 2344566666
Q ss_pred hcCCeEEEeccCC---e--eee-ecccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceEEEEe
Q 008130 321 KHGYQALYKRKTN---E--VEF-NKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVAN 394 (576)
Q Consensus 321 ~~GY~~~~~~k~~---~--i~f-~~~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~N 394 (576)
..+|..+.....+ . ..| +...+..... . ....+...+..+.++.+.+.. .+..|+++|
T Consensus 70 ~~~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~---~--~~~~~~g~~g~kGav~~r~~~-----------~~~~~~fvn 133 (282)
T 2imq_X 70 SKGYTKLKNTITETMGLTVYCLEKHLDQNTLKN---E--TIIVTVDDQKKSGGIVTSFTI-----------YNKRFSFTT 133 (282)
T ss_dssp HTTEEEEEEEECSSEEEEEEEEGGGCCTTTCCC---E--EEEEECSTTSCSEEEEEEEEE-----------TTEEEEEEE
T ss_pred CCceEEEEeccCceeEEEEEEEEccccCcccee---e--eeccccccccCCceEEEEEEE-----------CCEEEEEEE
Confidence 5677666542121 1 111 2211111110 0 001111223456677666664 367899999
Q ss_pred eecccCCCchhhHHHHHHHHHHHHHHHhhcCCCCEEEEecCCCCCC---ChhhHhhhcC
Q 008130 395 THVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPG---SAPHALLAMG 450 (576)
Q Consensus 395 THL~~~p~~~~vRl~Q~~~L~~~L~~~~~~~~~pvIl~GDFNs~p~---S~~~~lL~~g 450 (576)
+||..+......|..|++.|++.++.+ ....|+|+|||||..++ +.+++++.++
T Consensus 134 ~HL~~~~~~~~~R~~~~~~I~~~~~~~--~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~ 190 (282)
T 2imq_X 134 SRMSDEDVTSTNTKYAYDTRLDYSKKD--DPSDFLFWIGDLNVRVETNATHAKSLVDQN 190 (282)
T ss_dssp EECCTTCCCTTSSSSSCCGGGCTTSSS--SCCSEEEEEEECSCCBCSCHHHHHHHHHTT
T ss_pred ECCCCCCchHHHHHHHHHHHHHhhhcc--CccceEEEecccccccCCCHHHHHHHHhhc
Confidence 999876443445666776666554332 23458999999997765 4456677654
No 27
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.63 E-value=4.4e-16 Score=153.75 Aligned_cols=161 Identities=17% Similarity=0.130 Sum_probs=92.5
Q ss_pred CCCCcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhcCC-CcEEEEeccchhh------HH---HH---H
Q 008130 249 SSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYR-ADIVCLQEVQNDH------FE---EF---F 315 (576)
Q Consensus 249 ~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~-aDIIcLQEV~~~~------~~---~~---l 315 (576)
+....+|||||||......+ .-+|. ..|.+.|.+++ +|||.|||++... -. .. .
T Consensus 11 ~~~~~~kV~TwNiqgs~~~t----------eskw~---~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v 77 (262)
T 2f1n_A 11 TDLTDFRVATWNLQGASATT----------ESKWN---INVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPV 77 (262)
T ss_dssp CCGGGCCEEEEEEEECTTSC----------HHHHH---THHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCC
T ss_pred cccceeEEEEEEcCCCCCCC----------ccccc---ccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCH
Confidence 45678999999999854221 12342 33556888888 9999999998430 00 00 0
Q ss_pred HHHHhhcC------CeEEEeccCC--eeeeecccccccccccCccccccccccc-ccCcEEEEEEEeeeecCCCCCCCCC
Q 008130 316 APELDKHG------YQALYKRKTN--EVEFNKAAQSLTDAILPSAQKKNALNRL-VKDNVALIVVLEAKFSNQGADTPGK 386 (576)
Q Consensus 316 ~~~L~~~G------Y~~~~~~k~~--~i~f~~~~ls~~~~~~~~~~~~~~~~r~-~~d~val~~~Le~~~~~~~~~~~~~ 386 (576)
.+.+..+| +.++|..+.. .-.++.+.+|+.+... ...+... ...+..+-+.+
T Consensus 78 ~E~~w~lGt~srp~~~yiY~~~~D~~~~r~nlAIlSr~~ade-----v~vLp~~~~~~Rp~lgiri-------------- 138 (262)
T 2f1n_A 78 RELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADE-----VFVLSPVRQGGRPLLGIRI-------------- 138 (262)
T ss_dssp EEEEEECCSSSSSCEEEEEEECSCSSSCSSCEEEEESSCCSE-----EEEECCSSTTCCCEEEEEE--------------
T ss_pred HHHHHHhCCCCCCceEEEEEeeccCCCCceeeEEEEcccccc-----eEECCCCCCCCCceEEEEE--------------
Confidence 11122345 6666665421 1235555555433210 0001100 01222222222
Q ss_pred CceEEEEeeecccCCCchhhHHHHHHHHHHHHHHHhhcCC-----CCEEEEecCCCCCCChhhHhh
Q 008130 387 RQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASAD-----IPMLVCGDFNSVPGSAPHALL 447 (576)
Q Consensus 387 g~~l~V~NTHL~~~p~~~~vRl~Q~~~L~~~L~~~~~~~~-----~pvIl~GDFNs~p~S~~~~lL 447 (576)
+ .++++|||+.+.. ...|..|+..+.+.+... .+ .|+|++||||..|++...+++
T Consensus 139 ~-~~~ff~tHa~a~~--g~da~a~v~~I~~~~~~~---~~~~~~~~pwii~GDFNr~P~sl~~~l~ 198 (262)
T 2f1n_A 139 G-NDAFFTAHAIAMR--NNDAPALVEEVYNFFRDS---RDPVHQALNWMILGDFNREPADLEMNLT 198 (262)
T ss_dssp T-TEEEEEEECCSSS--SCSHHHHHHHHHHHHHTC---SSHHHHTCEEEEEEECSSCHHHHHTTSC
T ss_pred C-CEEEEEEEecCCC--CccHHHHHHHHHHHHhcC---cccccCCCcEEEEecCCCCCcchhhhhh
Confidence 1 2889999997763 244777887777776652 23 699999999999998776543
No 28
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.60 E-value=2.3e-15 Score=150.11 Aligned_cols=163 Identities=15% Similarity=0.126 Sum_probs=84.0
Q ss_pred CcEEEEEeccCCCcCCCCCCCCCCCccccCHHHHHHHHHHHHhc-CCCcEEEEeccchhhHHHHHHHHH-----------
Q 008130 252 GTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIG-YRADIVCLQEVQNDHFEEFFAPEL----------- 319 (576)
Q Consensus 252 ~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~-~~aDIIcLQEV~~~~~~~~l~~~L----------- 319 (576)
..||||||||+.....+ -..+...|++.|.+ .+||||.|||++.-.-.......+
T Consensus 3 ~~~kv~TwNi~g~~~~~-------------~~k~~~~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~~r~~~~~g~~v~e~ 69 (261)
T 1sr4_B 3 SDFKVATWNLQGSSAVN-------------ESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEY 69 (261)
T ss_dssp GGSCEEEEECCCCSSSS-------------HHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEE
T ss_pred cccEEEEEEcCCCCCCC-------------hhhhhhHHHHHHcCCCCCCEEEEecCCCCCCccccchhhhcccCCchhhh
Confidence 36899999999743211 11223368888998 789999999997621110000111
Q ss_pred -hhc------CCeEEEeccC--CeeeeecccccccccccCcccccccccccccCcEEEEEEEeeeecCCCCCCCCCCceE
Q 008130 320 -DKH------GYQALYKRKT--NEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLL 390 (576)
Q Consensus 320 -~~~------GY~~~~~~k~--~~i~f~~~~ls~~~~~~~~~~~~~~~~r~~~d~val~~~Le~~~~~~~~~~~~~g~~l 390 (576)
-++ |+.++|..+. +.-.++.+.+++.+... .............+.++.+ + + .+ +
T Consensus 70 ~w~lg~~~r~~~~yiy~~~~d~~~g~~g~AIlSR~~~~~--v~~l~~~~~~~~~R~~l~i--~--i---------~g--~ 132 (261)
T 1sr4_B 70 TWNLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADE--AFIVHSDSSVLQSRPAVGI--R--I---------GT--D 132 (261)
T ss_dssp EEESSCSSSCCEEEEEEECCCTTTSCSCEEEEESSCCSE--EEEECCCCCSSCCCCEEEE--E--E---------TT--E
T ss_pred hhhcccccCCCceEEEEEeecCCCCccceEEEEccchhc--eEEcCCCCCCCcCcceEEE--E--E---------CC--e
Confidence 011 3345554321 11123444454432100 0000000000112333333 2 2 23 8
Q ss_pred EEEeeecccCCCchhhHHHHHHHHHHHHHHH---hhcCCCCEEEEecCCCCCCChhhHhh
Q 008130 391 CVANTHVNVHQELKDVKLWQVHTLLKGLEKI---AASADIPMLVCGDFNSVPGSAPHALL 447 (576)
Q Consensus 391 ~V~NTHL~~~p~~~~vRl~Q~~~L~~~L~~~---~~~~~~pvIl~GDFNs~p~S~~~~lL 447 (576)
.|++|||.... ...+..|+..|.+.++.. ......|+||+||||+.|.+ ....|
T Consensus 133 ~f~s~Hl~~~~--~~ea~~~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN~~p~~-~~~~L 189 (261)
T 1sr4_B 133 VFFTVHALATG--GSDAVSLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPAN-LEVAL 189 (261)
T ss_dssp EEEEEECCTTT--TTTHHHHHHHHHHHHHC---CGGGGGCEEEEEEECSSCHHH-HHHHH
T ss_pred EEEEeCCCCCC--CchHHHHHHHHHHHHHhcccCCcccCCcEEEEeeCCCChhH-HHHHh
Confidence 99999997654 234566777777666543 11111699999999999765 33444
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.52 E-value=2e-13 Score=142.64 Aligned_cols=78 Identities=19% Similarity=0.200 Sum_probs=53.0
Q ss_pred ccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCCchhhHHHHHHHHHHHHHHHhh---cCCCCEEEEecCC--
Q 008130 362 VKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA---SADIPMLVCGDFN-- 436 (576)
Q Consensus 362 ~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vRl~Q~~~L~~~L~~~~~---~~~~pvIl~GDFN-- 436 (576)
+..+.++.+.+.. .+..|+++|+||.++....+.|..|...+++.+.-... ....++|+|||||
T Consensus 143 ~gnKGav~vr~~~-----------~~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNyR 211 (347)
T 1i9z_A 143 SGNKGAVAIRFDY-----------EDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYR 211 (347)
T ss_dssp --CCEEEEEEEEE-----------TTEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCC
T ss_pred cCCCceEEEEEEE-----------CCeEEEEEEecCCCCCccHHHHHHHHHHHHHhhccCcccccccCccEEEecccccc
Confidence 4566777776665 35689999999988776666799998888776531110 1235799999999
Q ss_pred -CCCCChhhHhhhcC
Q 008130 437 -SVPGSAPHALLAMG 450 (576)
Q Consensus 437 -s~p~S~~~~lL~~g 450 (576)
..+.+.+.+++..+
T Consensus 212 i~~~~~~v~~~i~~~ 226 (347)
T 1i9z_A 212 ISLTYEEVVPCIAQG 226 (347)
T ss_dssp BSSCHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHhhc
Confidence 44555566666654
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.30 E-value=1.3e-11 Score=129.28 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=41.9
Q ss_pred CCceEEEEeeecccCCCchhhHHHHHHHHHHHHHHHh---------------hcCCCCEEEEecCCCCCCCh
Q 008130 386 KRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIA---------------ASADIPMLVCGDFNSVPGSA 442 (576)
Q Consensus 386 ~g~~l~V~NTHL~~~p~~~~vRl~Q~~~L~~~L~~~~---------------~~~~~pvIl~GDFNs~p~S~ 442 (576)
.+..|+++|+||.++......|..|...|++.+.-.. .....++|++||||-..+..
T Consensus 141 ~~t~~~Fvn~HLaa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~ 212 (357)
T 2xsw_A 141 FGTSFLFITSHFTSGDGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGG 212 (357)
T ss_dssp TTEEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSC
T ss_pred CCeEEEEEEEccCCCCchHHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccccc
Confidence 3678999999999887766788899988877663100 00124799999999877753
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=99.01 E-value=2.5e-08 Score=102.00 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=45.2
Q ss_pred ccCcEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCCchhhHHHHHHHHHHHHHHHhh---------cCCCCEEEE
Q 008130 362 VKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA---------SADIPMLVC 432 (576)
Q Consensus 362 ~~d~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vRl~Q~~~L~~~L~~~~~---------~~~~pvIl~ 432 (576)
+.++.|+.+.+.. .+..|+++|+||.++.+....|..+...|++.+.-... ....-+|++
T Consensus 120 ~GNKGaV~ir~~~-----------~~ts~cFVnsHLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~ 188 (313)
T 3mtc_A 120 MGNKGGVAIRFQF-----------HNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWL 188 (313)
T ss_dssp STTSEEEEEEEEE-----------TTEEEEEEEEECCCSGGGHHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEE
T ss_pred ccCCceEEEEEEE-----------CCcEEEEEeeccCCCchHHHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEe
Confidence 4556666666654 35689999999988776666777788777765531000 011249999
Q ss_pred ecCCCCCC
Q 008130 433 GDFNSVPG 440 (576)
Q Consensus 433 GDFNs~p~ 440 (576)
||||-.-+
T Consensus 189 GDLNyRi~ 196 (313)
T 3mtc_A 189 GDLNYRIE 196 (313)
T ss_dssp EECCCCBC
T ss_pred cccccccc
Confidence 99997654
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.95 E-value=1.9e-08 Score=103.10 Aligned_cols=143 Identities=13% Similarity=0.112 Sum_probs=73.0
Q ss_pred CCCcEE--EEeccchh--hHHHHHHHHHhh---cCCeEEEeccCCe---eeeec-ccccccccccCcccccccccccccC
Q 008130 296 YRADIV--CLQEVQND--HFEEFFAPELDK---HGYQALYKRKTNE---VEFNK-AAQSLTDAILPSAQKKNALNRLVKD 364 (576)
Q Consensus 296 ~~aDII--cLQEV~~~--~~~~~l~~~L~~---~GY~~~~~~k~~~---i~f~~-~~ls~~~~~~~~~~~~~~~~r~~~d 364 (576)
..+||+ +|||+... .+.+.+...|.. ..|.-+....-.. ..|-+ ........+.. ......+...+.+
T Consensus 46 ~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~-~~v~tG~~g~~GN 124 (316)
T 4a9c_A 46 IPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVST-SSVKTGIANTLGN 124 (316)
T ss_dssp SCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEEEEEEETTEEEEEEECGGGGGGEEEEEE-EEEEEC------C
T ss_pred CCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEEEeeeehheeeeeEEeHHHhhhCccccc-ceeeeeeeEecCC
Confidence 457987 99999542 334455555653 3565443322111 12221 11111111100 0011122222345
Q ss_pred cEEEEEEEeeeecCCCCCCCCCCceEEEEeeecccCCCchhhHHHHHHHHHHHHH---HHhhcCC-----CCEEEEecCC
Q 008130 365 NVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLE---KIAASAD-----IPMLVCGDFN 436 (576)
Q Consensus 365 ~val~~~Le~~~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vRl~Q~~~L~~~L~---~~~~~~~-----~pvIl~GDFN 436 (576)
+.|+.+.+.. .+..|+++|+||.++......|..+...|++.+. ......+ ..||++||||
T Consensus 125 KGaV~ir~~~-----------~~ts~~FVn~HLaAg~~~~~~Rn~d~~~I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLN 193 (316)
T 4a9c_A 125 KGAVGVSFMF-----------NGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLN 193 (316)
T ss_dssp EEEEEEEEEE-----------TTEEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCC-------CCTTTTSSEEEEEEECC
T ss_pred CceEEEEEEE-----------CCcEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCCcCccccCCcCCeEEEcCCcc
Confidence 5565555554 3578999999998887777788888888877652 0000011 2489999999
Q ss_pred CCCC---ChhhHhhhcC
Q 008130 437 SVPG---SAPHALLAMG 450 (576)
Q Consensus 437 s~p~---S~~~~lL~~g 450 (576)
-.-+ ..+.+++..+
T Consensus 194 yRi~~~~~~v~~~i~~~ 210 (316)
T 4a9c_A 194 YRLDMDIQEILNYISRK 210 (316)
T ss_dssp CCBSSCHHHHHHHHHTT
T ss_pred CCcCCCHHHHHHHHhcc
Confidence 7543 2334455443
No 33
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=94.87 E-value=0.02 Score=43.61 Aligned_cols=37 Identities=24% Similarity=0.639 Sum_probs=30.1
Q ss_pred ccccCCCCCCceeecchhhccCCCCCceeecChHHhHHhHHHHHH
Q 008130 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRV 107 (576)
Q Consensus 63 ~~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~ 107 (576)
..| ..|++.+.++|..|.. .+||+.+|=+..|+.||.
T Consensus 16 ~~C-~~C~~~~~~~Cs~C~~-------v~YCs~~CQ~~~W~~Hk~ 52 (60)
T 2dj8_A 16 ESC-WNCGRKASETCSGCNT-------ARYCGSFCQHKDWEKHHH 52 (60)
T ss_dssp CCC-SSSCSCCCEECTTTSC-------CEESSHHHHHHTHHHHTT
T ss_pred ccc-ccCCCCCcccCCCCCC-------EeeeCHHHHHHHHHHHHH
Confidence 356 6788888899998853 579999999999997764
No 34
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=94.84 E-value=0.019 Score=43.75 Aligned_cols=37 Identities=24% Similarity=0.639 Sum_probs=30.2
Q ss_pred ccccCCCCCCceeecchhhccCCCCCceeecChHHhHHhHHHHHH
Q 008130 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRV 107 (576)
Q Consensus 63 ~~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~ 107 (576)
..| ..|++.+.++|..|.. .+||+.+|=+..|+.||.
T Consensus 14 ~~C-~~C~~~~~~~Cs~C~~-------v~YCs~~CQ~~dW~~Hk~ 50 (60)
T 2od1_A 14 ESC-WNCGRKASETCSGCNT-------ARYCGSFCQHKDWEKHHH 50 (60)
T ss_dssp SCC-TTTSSCCCEECTTTSC-------CEESSHHHHHHHHHHHTT
T ss_pred Ccc-ccCCCcccccCCCCCC-------eeecCHHHHHHHHHHHhH
Confidence 357 7888888899998752 569999999999997764
No 35
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=94.70 E-value=0.021 Score=45.01 Aligned_cols=40 Identities=23% Similarity=0.558 Sum_probs=32.3
Q ss_pred ccccCCCCCCceeecchhhccCCCCCceeecChHHhHHhHHHHHHHHH
Q 008130 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHD 110 (576)
Q Consensus 63 ~~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~~h~ 110 (576)
..| ..|++.+..+|-.|.. .+||+.+|=+..|+.||..=+
T Consensus 16 ~~C-~~C~~~~~~~Cs~Ck~-------v~YCs~eCQ~~~W~~HK~~C~ 55 (70)
T 2d8q_A 16 PRC-AYCSAEASKRCSRCQN-------EWYCCRECQVKHWEKHGKTCV 55 (70)
T ss_dssp CBC-SSSCCBCCCBCTTTSC-------CBCSCHHHHHHTHHHHHHHCC
T ss_pred CcC-CCCCCcccccCCCCCC-------EeeCCHHHhHHHHHHHHHHHH
Confidence 357 7888888889988863 568999999999999887543
No 36
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=94.61 E-value=0.02 Score=44.17 Aligned_cols=38 Identities=24% Similarity=0.647 Sum_probs=30.6
Q ss_pred ccccCCCCCCceeecchhhccCCCCCceeecChHHhHHhHHHHHHH
Q 008130 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVL 108 (576)
Q Consensus 63 ~~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~~ 108 (576)
..| ..|++.+.++|..|.. .+|||.+|=+..|+.||..
T Consensus 18 ~~C-~~C~~~~~~~Cs~C~~-------~~YCs~~CQ~~~W~~Hk~~ 55 (64)
T 2odd_A 18 ESC-WNCGRKASETCSGCNT-------ARYCGSFCQHKDWEKHHHI 55 (64)
T ss_dssp SSC-TTTSSCCCEEETTTSC-------CEESSHHHHHHHHHHHTTT
T ss_pred CcC-ccccCCCcccCCCCCC-------hhhCCHHHHHHHHHHHhHH
Confidence 356 6788888899998862 5689999999999977653
No 37
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=94.12 E-value=0.017 Score=42.45 Aligned_cols=37 Identities=32% Similarity=0.735 Sum_probs=29.9
Q ss_pred ccccCCCCCCceeecchhhccCCCCCceeecChHHhHHhHHHHHH
Q 008130 63 AVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRV 107 (576)
Q Consensus 63 ~~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~ 107 (576)
..| ..|++.+.++|..|.. .+|||.+|=+..|+.||.
T Consensus 10 ~~C-~~C~~~~~~~C~~C~~-------~~YCs~~CQ~~~W~~Hk~ 46 (52)
T 2jw6_A 10 QSC-VNCGREAMSECTGCHK-------VNYCSTFCQRKDWKDHQH 46 (52)
T ss_dssp -CC-SSSSSSCSEECTTTCS-------SEESSHHHHHHHTTTGGG
T ss_pred CcC-CCCCCCCcCcCCCCCC-------EeecCHHHHHHHHHHHCH
Confidence 457 7888888899998852 568999999999997764
No 38
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=88.65 E-value=0.26 Score=52.31 Aligned_cols=39 Identities=28% Similarity=0.583 Sum_probs=29.4
Q ss_pred ccccCCCCC--CceeecchhhccCCCCCceeecChHHhHHhHHHHHHHH
Q 008130 63 AVCSVHPSE--QATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLH 109 (576)
Q Consensus 63 ~~c~~~~~~--~~~l~c~~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~~h 109 (576)
..| .+|.+ .+...|..|.. ..|||.+|.+..|+.||..=
T Consensus 48 ~~C-~~C~~~~~~~~~C~~C~~-------~~yCs~~Cq~~~w~~Hk~eC 88 (429)
T 3qwp_A 48 VVC-DRCLLGKEKLMRCSQCRV-------AKYCSAKCQKKAWPDHKREC 88 (429)
T ss_dssp TBC-TTTCCBCSSCEECTTTSC-------CEESSHHHHHHTHHHHHHHH
T ss_pred CcC-cCCCCcCCCCCcCCCCCC-------cccCChhhhhhhhhhhHHhh
Confidence 457 67775 34578988853 46899999999999888643
No 39
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=88.30 E-value=0.24 Score=52.72 Aligned_cols=38 Identities=18% Similarity=0.559 Sum_probs=28.9
Q ss_pred ccccCCCCCC--ceeecchhhccCCCCCceeecChHHhHHhHHHHHHH
Q 008130 63 AVCSVHPSEQ--ATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVL 108 (576)
Q Consensus 63 ~~c~~~~~~~--~~l~c~~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~~ 108 (576)
..| .+|.+. +...|+.|.. .+|||.+|.+..|+.||..
T Consensus 50 ~~C-~~C~~~~~~~~~C~~C~~-------~~yCs~~Cq~~~w~~Hk~e 89 (433)
T 3qww_A 50 HHC-ECCFARKEGLSKCGRCKQ-------AFYCDVECQKEDWPLHKLE 89 (433)
T ss_dssp TBC-TTTCCBCSSCEECTTTSC-------CEESSHHHHHHHHHHHTTT
T ss_pred CcC-CcccccCCCCCCCCCCcc-------eeecChhhhhhhhhHHHHH
Confidence 456 677764 4588998862 5699999999999888753
No 40
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=86.57 E-value=0.45 Score=51.46 Aligned_cols=40 Identities=25% Similarity=0.482 Sum_probs=29.3
Q ss_pred ccccCCCCC--CceeecchhhccCCCCCceeecChHHhHHhHHHHHHHHH
Q 008130 63 AVCSVHPSE--QATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHD 110 (576)
Q Consensus 63 ~~c~~~~~~--~~~l~c~~c~~~~~~~~~~~fc~q~Cfk~~w~~hk~~h~ 110 (576)
..| .+|.+ .+.+.|..|.. .+|||.+|.+..|+.||..=.
T Consensus 50 ~~C-~~C~~~~~~~~~C~~C~~-------~~yCs~~Cq~~~w~~Hk~eC~ 91 (490)
T 3n71_A 50 FVC-HTCFKRQEKLHRCGQCKF-------AHYCDRTCQKDAWLNHKNECA 91 (490)
T ss_dssp TBC-TTTCCBCSCCEECTTTSC-------CEESSHHHHHHHHHHHHHHHH
T ss_pred CcC-CCCCCCCCCCCCCCCCCC-------cCcCCHHHhhhhhhHHHHHhH
Confidence 456 67755 34578888752 469999999999998886443
No 41
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.50 E-value=5.1 Score=29.84 Aligned_cols=28 Identities=36% Similarity=0.712 Sum_probs=21.4
Q ss_pred cccCCCCCCceeecchhhccCCCCCceeecChHHhHH
Q 008130 64 VCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSD 100 (576)
Q Consensus 64 ~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~q~Cfk~ 100 (576)
.| .-|+..++-.||.|. ..|||-.|||.
T Consensus 14 ~C-~vC~~~~kY~CPrC~--------~~yCSl~C~k~ 41 (56)
T 2yqq_A 14 VC-VICLEKPKYRCPACR--------VPYCSVVCFRK 41 (56)
T ss_dssp CC-TTTCSCCSEECTTTC--------CEESSHHHHHH
T ss_pred cc-CcCcCCCeeeCCCCC--------CCeeCHHHHHH
Confidence 36 557778889999774 44999999874
No 42
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=47.08 E-value=8.1 Score=29.90 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=17.0
Q ss_pred eeecchhhccCC---CCCceeecChHHhH
Q 008130 74 TLQCLGCVKAKI---PVAKSYHCSPKCFS 99 (576)
Q Consensus 74 ~l~c~~c~~~~~---~~~~~~fc~q~Cfk 99 (576)
+..||+|.|.-. .....-|||+-|=.
T Consensus 9 ~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~ 37 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEISPFRPFCSKRCQL 37 (68)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHHH
T ss_pred cCcCCCCCCcccccccCCCCcccCHHHHh
Confidence 467888887632 11235599999944
No 43
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=45.97 E-value=8 Score=29.05 Aligned_cols=29 Identities=28% Similarity=0.694 Sum_probs=20.7
Q ss_pred ccccCCCC----CCceeecchhhccCCCCCceeecChHHhHH
Q 008130 63 AVCSVHPS----EQATLQCLGCVKAKIPVAKSYHCSPKCFSD 100 (576)
Q Consensus 63 ~~c~~~~~----~~~~l~c~~c~~~~~~~~~~~fc~q~Cfk~ 100 (576)
..| .-|+ +.++-.||.|. ++ |||-.|||.
T Consensus 12 ~~C-~vC~~~~~~~akY~CPrC~---~r-----YCSl~C~k~ 44 (59)
T 1x4s_A 12 GPC-GFCPAGEVQPARYTCPRCN---AP-----YCSLRCYRT 44 (59)
T ss_dssp EEE-CSSCTTCCEEECEECTTTC---CE-----ESSHHHHHH
T ss_pred CcC-cCCCCCcCCCccccCcCCC---CC-----ccChHHHHH
Confidence 346 4565 45779999773 44 999999993
No 44
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=40.91 E-value=24 Score=33.22 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=18.8
Q ss_pred eeecCCccCCCceEEEEEEE
Q 008130 178 KTYTPSADDIGHVLKFECVV 197 (576)
Q Consensus 178 ~~y~P~~~diG~~l~l~~~~ 197 (576)
..|.|.+.|+|.+|+++|++
T Consensus 65 ~~YAPeP~DVGrlLqadi~~ 84 (230)
T 4dix_A 65 SVYAPEPFDVGRVLHADIIY 84 (230)
T ss_dssp SEECCCGGGBTSEEEEEEEE
T ss_pred ccccCCccccccEEEEEEec
Confidence 67999999999999999986
No 45
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=27.51 E-value=25 Score=24.60 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=18.7
Q ss_pred eeecchhhccCCCC----CceeecChHHhHHh
Q 008130 74 TLQCLGCVKAKIPV----AKSYHCSPKCFSDA 101 (576)
Q Consensus 74 ~l~c~~c~~~~~~~----~~~~fc~q~Cfk~~ 101 (576)
.+.|-.|-+.|... ...-|||..|=|..
T Consensus 6 ~~~CE~CG~~g~~~~F~~ksKRFCS~~Carry 37 (43)
T 2w0t_A 6 PAVCEMCGIVGTREAFFSKTKRFCSVSCSRSY 37 (43)
T ss_dssp EEECTTTCCEEETTTSCTTTSSSSSHHHHHHH
T ss_pred eehhhhhcCcchhhhhccCCcceechhhhCcc
Confidence 47788888876541 11338999998763
No 46
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=27.00 E-value=23 Score=26.19 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=14.0
Q ss_pred ccCCCCCceeecChHHhHH
Q 008130 82 KAKIPVAKSYHCSPKCFSD 100 (576)
Q Consensus 82 ~~~~~~~~~~fc~q~Cfk~ 100 (576)
+.-|.....||||++|-+.
T Consensus 20 ~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 20 SKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp TTSEESSSCEESSHHHHHT
T ss_pred HHhhhcCCeEEehHHHHcc
Confidence 3445566889999999764
No 47
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=26.77 E-value=15 Score=22.53 Aligned_cols=10 Identities=30% Similarity=0.707 Sum_probs=8.1
Q ss_pred eeecchhhcc
Q 008130 74 TLQCLGCVKA 83 (576)
Q Consensus 74 ~l~c~~c~~~ 83 (576)
..|||.|.+.
T Consensus 6 ~vqcpvcqq~ 15 (29)
T 3vhs_A 6 QVQCPVCQQM 15 (29)
T ss_dssp EEECTTTCCE
T ss_pred eeeChHHHHh
Confidence 5899999874
Done!