BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008131
(576 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GSE|A Chain A, Crystal Structure Of Menaquinone-specific Isochorismate
Synthase From Yersinia Pestis Co92
Length = 458
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/343 (29%), Positives = 171/343 (49%), Gaps = 14/343 (4%)
Query: 221 GSFYFMIPQVEFDELERSSTLAVTLAWDDALSWTWAKAISTLESTMDKVSSKIVRLQKEV 280
SF F+ P++E + ++L + L+ + +L +AI+ ++ M + ++ +
Sbjct: 125 ASFLFL-PRLEILRRGKKTSLTLNLSSETSLQKDALQAITFIDQLMAARALPVLNAR--- 180
Query: 281 SRTFILSNHHSPSKMHWDLAVKKALEIINRSSTPLTKVVLARSSRVITATDIDPIAWLAC 340
I + H+P W +++AL I + L KVVLAR++ + + A++A
Sbjct: 181 ----IQHSSHTPGYPQWRNLIQQALNDIEQQK--LDKVVLARTTTLTLNKPLSCAAFMAA 234
Query: 341 LKQVEGENAYQFCLQPPDAPAFIGNTPEQLFHRKWLKITSEXXXXXXXXXXXXXXDLQIE 400
+QV Y F L+ D AF+G++PE+L+ R+ L + +E +
Sbjct: 235 SRQV-NHRCYHFMLRFDDRQAFLGSSPERLYLRQQLHLETEALAGTVSNLDSDPQAAVLA 293
Query: 401 HDLLSSPKDHLEFTIVRESIRSKLEAVCNRVVIEPKKAIRKLPRVQHLYARLAGRLRSED 460
L+ K+ E +V + I +L+ V + P + IR L +VQHL R+ +L S
Sbjct: 294 DWLMHDEKNQRENLLVVDDICQRLQGGVTAVDVMPPEIIR-LRKVQHLRRRICAQL-SRA 351
Query: 461 EEYDIMASLHPSPAVCGFPTEEARLLIAETEVFDRGMYAGPVGWFGGGESEFAVGIRSAL 520
+ D + L P+ AV G P E AR IA+ E+F RG YAG G+ +EF+V +RSA
Sbjct: 352 SDTDCLQRLQPTAAVAGLPREAARQFIAKHELFSRGWYAGSAGYLSLKRTEFSVALRSAR 411
Query: 521 VEKGLGALIYAGTGIVEGSNPSLEWDELELKTSQFTKFLKLEV 563
V+ G +YAG GIV GS+ EW E++ K++ L+ E
Sbjct: 412 VD-GQQIHLYAGAGIVAGSDAEQEWQEIDNKSAGLQSLLEHEA 453
>pdb|2EUA|A Chain A, Structure And Mechanism Of Menf, The Menaquinone-Specific
Isochorismate Synthase From Escherichia Coli
pdb|2EUA|B Chain B, Structure And Mechanism Of Menf, The Menaquinone-Specific
Isochorismate Synthase From Escherichia Coli
pdb|3BZM|A Chain A, Crystal Structure Of Open Form Of Menaquinone-Specific
Isochorismate Synthase, Menf
pdb|3BZN|A Chain A, Crystal Structure Of Open Form Of Menaquinone-Specific
Isochorismate Synthase, Menf
Length = 431
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 126/467 (26%), Positives = 207/467 (44%), Gaps = 59/467 (12%)
Query: 100 PFTSGI--IRLQVPIEEQIQAIDWLHAQHQLLPRCFFSGRSRKKDSDISVVFPNGNGQSS 157
P T GI I + P+++ A+ WL +Q Q P+ ++ R NG+ ++
Sbjct: 20 PATPGIRVIDIPFPLKDAFDALSWLASQ-QTYPQFYWQQR-------------NGDEEAV 65
Query: 158 VTHNLVSVAGVGSAVFFRNLHPFSYNDWRSIKRFISTECPMIRAYGAMRFD-ARANISSE 216
V + + A F HP E +R +G FD ++ N+
Sbjct: 66 VLGAITRFTSLDQAQRFLRQHP---------------EHADLRIWGLNAFDPSQGNL--- 107
Query: 217 WEDFGSFYFMIPQVEFDELERSSTLAVTLAWDDALSWTWAKAISTLESTMDKVSSK-IVR 275
++P++E+ +TL +TL + +L AI E VS K +
Sbjct: 108 ---------LLPRLEWRRCGGKATLRLTLFSESSLQ---HDAIQAKEFIATLVSIKPLPG 155
Query: 276 LQKEVSRTFILSNHHSPSKMHWDLAVKKALEIINRSSTPLTKVVLARSSRVITATDIDPI 335
L +R H P K W ++ A + I + L KVVLAR++ + A+ ++
Sbjct: 156 LHLTTTR-----EQHWPDKTGWTQLIELATKTI--AEGELDKVVLARATDLHFASPVNAA 208
Query: 336 AWLACLKQVEGENAYQFCLQPPDAPAFIGNTPEQLFHRKWLKITSEXXXXXXXXXXXXXX 395
A +A +++ N Y F + AF+G++PE+L+ R+ + +E
Sbjct: 209 AMMAASRRL-NLNCYHFYMAFDGENAFLGSSPERLWRRRDKALRTEALAGTVANNPDDKQ 267
Query: 396 DLQIEHDLLSSPKDHLEFTIVRESIRSKLEAVCNRVVIEPKKAIRKLPRVQHLYARLAGR 455
Q+ L++ K+ E +V E I +L+A + + P + +R L +VQHL +
Sbjct: 268 AQQLGEWLMADDKNQRENMLVVEDICQRLQADTQTLDVLPPQVLR-LRKVQHLRRCIWTS 326
Query: 456 LRSEDEEYDIMASLHPSPAVCGFPTEEARLLIAETEVFDRGMYAGPVGWFGGGESEFAVG 515
L D+ + L P+ AV G P + AR IA E F R YAG G+ +SEF V
Sbjct: 327 LNKADDVI-CLHQLQPTAAVAGLPRDLARQFIARHEPFTREWYAGSAGYLSLQQSEFCVS 385
Query: 516 IRSALVEKGLGALIYAGTGIVEGSNPSLEWDELELKTSQFTKFLKLE 562
+RSA + G +YAG GIV GS+P EW E++ K + L++E
Sbjct: 386 LRSAKI-SGNVVRLYAGAGIVRGSDPEQEWQEIDNKAAGLRTLLQME 431
>pdb|3OS6|A Chain A, Crystal Structure Of Putative
2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
Dhbc From Bacillus Anthracis.
pdb|3OS6|B Chain B, Crystal Structure Of Putative
2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
Dhbc From Bacillus Anthracis.
pdb|3OS6|C Chain C, Crystal Structure Of Putative
2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
Dhbc From Bacillus Anthracis.
pdb|3OS6|D Chain D, Crystal Structure Of Putative
2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
Dhbc From Bacillus Anthracis
Length = 399
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 136/289 (47%), Gaps = 14/289 (4%)
Query: 279 EVSRTFILSNHHSPSKMHWDLAVKKALEIINRSSTPLTKVVLARSSRVITATDIDPIAWL 338
E++R P + VK+ +E I L K+VL+RS V ++ ID L
Sbjct: 106 EINRNLTFEXTPVPDHEVYXKGVKQGIEKIKDGD--LKKIVLSRSLDVKSSGKIDKQKLL 163
Query: 339 ACLKQVEGENAYQFCLQPP-----DAPAFIGNTPEQLFHRKWLKITSEXXXXXXXXXXXX 393
L + ++ Y F + P ++ IG +PE L R ++ S
Sbjct: 164 RELAE-HNKHGYTFAVNLPKDENENSKTLIGASPELLVSRHGXQVISNPLAGSRPRSDDP 222
Query: 394 XXDLQIEHDLLSSPKDHLEFTIVRESIRSKLEAVCNRVVIEPKKAIRKLPRVQHLYARLA 453
D + +LLSSPKD E +V E++ + L C+ + + K ++ HL +
Sbjct: 223 VEDKRRAEELLSSPKDLHEHAVVVEAVAAALRPYCHTLYVPEKPSVIHSEAXWHLSTEVK 282
Query: 454 GRLRSED-EEYDIMASLHPSPAVCGFPTEEARLLIAETEVFDRGMYAGPVGWFG-GGESE 511
G L++ + ++ +LHP+PAVCG P EEAR I + E FDR + G +GW G+ E
Sbjct: 283 GELKNPNTSSLELAIALHPTPAVCGTPXEEAREAIQKIEPFDREFFTGXLGWSDLNGDGE 342
Query: 512 FAVGIRSALVEKGLGALIYAGTGIVEGSNPSLEWDELELKTSQFTKFLK 560
+ V IR A V++ L YAG G+V S P DEL +++F LK
Sbjct: 343 WIVTIRCAEVQENTLRL-YAGAGVVAESKPE---DELAETSAKFQTXLK 387
>pdb|3HWO|A Chain A, Crystal Structure Of Escherichia Coli
Enterobactin-Specific Isochorismate Synthase Entc In
Complex With Isochorismate
pdb|3HWO|B Chain B, Crystal Structure Of Escherichia Coli
Enterobactin-Specific Isochorismate Synthase Entc In
Complex With Isochorismate
Length = 394
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 124/272 (45%), Gaps = 7/272 (2%)
Query: 292 PSKMHWDLAVKKALEIINRSSTP-LTKVVLARSSRVITATDIDPIAWLACLKQVEGENAY 350
P + ++ V +A + ++TP + KVVL+R + T ID L L + +Y
Sbjct: 127 PEQTTFEQMVARAAAL---TATPQVDKVVLSRLIDITTDAAIDSGVLLERLI-AQNPVSY 182
Query: 351 QFCLQPPDAPAFIGNTPEQLFHRKWLKITSEXXXXXXXXXXXXXXDLQIEHDLLSSPKDH 410
F + D +G +PE L + + +S D + + LL+S KD
Sbjct: 183 NFHVPLADGGVLLGASPELLLRKDGERFSSIPLAGSARRQPDEVLDREAGNRLLASEKDR 242
Query: 411 LEFTIVRESIRSKLEAVCNRVVIEPKKAIRKLPRVQHLYARLAGRLRSEDEEYDIMASLH 470
E +V ++++ L + + + + P + HL G+ S++ + LH
Sbjct: 243 HEHELVTQAMKEVLRERSSELHVPSSPQLITTPTLWHLATPFEGKANSQENALTLACLLH 302
Query: 471 PSPAVCGFPTEEARLLIAETEVFDRGMYAGPVGWFGG-GESEFAVGIRSALVEKGLGALI 529
P+PA+ GFP + A +IAE E FDR ++ G VGW G E+ V IR A + + +
Sbjct: 303 PTPALSGFPHQAATQVIAELEPFDRELFGGIVGWCDSEGNGEWVVTIRCAKLREN-QVRL 361
Query: 530 YAGTGIVEGSNPSLEWDELELKTSQFTKFLKL 561
+AG GIV S+P EW E +K S L
Sbjct: 362 FAGAGIVPASSPLGEWRETGVKLSTMLNVFGL 393
>pdb|1QDL|A Chain A, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 422
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 139/279 (49%), Gaps = 14/279 (5%)
Query: 291 SPSKMHWDLAVKKALEIINRSSTPLTKVVLARSSRVITATDIDPIAWLACLKQVEGENAY 350
S +K ++ V ++LE I S + +VVL+R R I + D P+ L+++ + Y
Sbjct: 155 SLNKNSYERIVSESLEYIR--SGYIFQVVLSRFYRYIFSGD--PLRIYYNLRRIN-PSPY 209
Query: 351 QFCLQPPDAPAFIGNTPEQLFHRKWLKITSEXXXXXXXXXXXXXXDLQIEHDLLSSPKDH 410
F L+ D IG++PE LF + + + DL++E +L++S KD
Sbjct: 210 MFYLKF-DEKYLIGSSPELLFRVQDNIVETYPIAGTRPRGADQEEDLKLELELMNSEKDK 268
Query: 411 LEFTIVRESIRSKLEAVC--NRVVIEPKKAIRKLPRVQHLYARLAGRLRSEDEEYDIMAS 468
E ++ + R+ L VC V + + K VQH+ +++ G L+ + +++++
Sbjct: 269 AEHLMLVDLARNDLGKVCVPGTVKVPELMYVEKYSHVQHIVSKVIGTLKKKYNALNVLSA 328
Query: 469 LHPSPAVCGFPTEEARLLIAETEVFDRGMYAGPVGWFGG-GESEFAVGIRSALVEKGLGA 527
P+ V G P A +I E + RG YAG VG+ G +EFA+ IR+A + K L
Sbjct: 329 TFPAGTVSGAPKPMAMNIIETLEEYKRGPYAGAVGFISADGNAEFAIAIRTAFLNKEL-L 387
Query: 528 LIYAGTGIVEGSNPSLEWDELELKTSQFTKFLKLEVPLR 566
I+AG GIV SNP E+ E E K K LK + +R
Sbjct: 388 RIHAGAGIVYDSNPESEYFETEHK----LKALKTAIGVR 422
>pdb|1I1Q|A Chain A, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 520
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 79/156 (50%), Gaps = 6/156 (3%)
Query: 396 DLQIEHDLLSSPKDHLEFTIVRESIRSKLEAVC---NRVVIEPKKAIRKLPRVQHLYARL 452
D +IE D+ + K+ E ++ + R+ L +C +R V + K + + V HL +R+
Sbjct: 345 DSRIELDMRTDHKELSEHLMLVDLARNDLARICTPGSRYVADLTK-VDRYSYVMHLVSRV 403
Query: 453 AGRLRSEDEEYDIMASLHPSPAVCGFPTEEARLLIAETEVFDRGMYAGPVGWFGG-GESE 511
G LR + + + + G P A LIA+ E RG Y G VG+F G+ +
Sbjct: 404 VGELRHDLDALHAYRACMNMGTLSGAPKVRAMQLIADAEGQRRGSYGGAVGYFTAHGDLD 463
Query: 512 FAVGIRSALVEKGLGALIYAGTGIVEGSNPSLEWDE 547
+ IRSALVE G+ A + AG GIV S P E DE
Sbjct: 464 TCIVIRSALVENGI-ATVQAGAGIVLDSVPQSEADE 498
>pdb|4GRH|A Chain A, Crystal Structure Of Pabb Of Stenotrophomonas Maltophilia
Length = 457
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 4/161 (2%)
Query: 402 DLLSSPKDHLEFTIVRESIRSKLEAVC--NRVVIEPKKAIRKLPRVQHLYARLAGRLRSE 459
+L+ PK+ E ++ + R+ L +C VV++ + V H+ + ++G LR E
Sbjct: 294 ELVGHPKERAEHVMLIDLERNDLGRICLPGTVVVDELMTVESYAHVHHIVSNVSGHLRPE 353
Query: 460 DEEYDIMASLHPSPAVCGFPTEEARLLIAETEVFDRGMYAGPVGWFG-GGESEFAVGIRS 518
+++A+ P + G P +I+E E RG Y G GW G+ + + IR+
Sbjct: 354 VTPGEVIAATFPGGTITGCPKVRCMQIISELEQVPRGAYTGAFGWLNRDGDLDLNILIRT 413
Query: 519 ALVEKGLGALIYAGTGIVEGSNPSLEWDELELKTSQFTKFL 559
A V+ G G GIV S+P E DE K + L
Sbjct: 414 AEVD-GHEVSFRTGAGIVVDSDPDKELDETRAKARGLLRAL 453
>pdb|2FN0|A Chain A, Crystal Structure Of Yersinia Enterocolitica Salicylate
Synthase (Irp9)
pdb|2FN0|B Chain B, Crystal Structure Of Yersinia Enterocolitica Salicylate
Synthase (Irp9)
pdb|2FN1|A Chain A, Crystal Structures Of Yersinia Enterocolitica Salicylate
Synthase (Irp9) In Complex With The Reaction Products
Salicylate And Pyruvate
pdb|2FN1|B Chain B, Crystal Structures Of Yersinia Enterocolitica Salicylate
Synthase (Irp9) In Complex With The Reaction Products
Salicylate And Pyruvate
Length = 437
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 5/200 (2%)
Query: 363 IGNTPEQLFHRKWLKITSEXXXXXXXXXXXXXXDLQIEHDLLSSPKDHLEFTI-VRESIR 421
+G +PE + K+ +E + E +LL K+ LE + V+E+I
Sbjct: 238 LGFSPELVMSVTGNKVVTEPLAGTRDRMGNPEHNKAKEAELLHDSKEVLEHILSVKEAI- 296
Query: 422 SKLEAVC--NRVVIEPKKAIRKLPRVQHLYARLAGRLRSEDEEYDIMASLHPSPAVCGFP 479
++LEAVC VV+E ++R+ VQHL + ++G+L + +D L PS G P
Sbjct: 297 AELEAVCLPGSVVVEDLMSVRQRGSVQHLGSGVSGQLAENKDAWDAFTVLFPSITASGIP 356
Query: 480 TEEARLLIAETEVFDRGMYAGPVGWFGGGESEFAVGIRSALVEKGLGALIYAGTGIVEGS 539
A I + E R +Y+G + + A+ +RS + + I AG GI+ S
Sbjct: 357 KNAALNAIMQIEKTPRELYSGAILLLDDTRFDAALVLRS-VFQDSQRCWIQAGAGIIAQS 415
Query: 540 NPSLEWDELELKTSQFTKFL 559
P E E K + +L
Sbjct: 416 TPERELTETREKLASIAPYL 435
>pdb|1I7Q|A Chain A, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|C Chain C, Anthranilate Synthase From S. Marcescens
pdb|1I7S|A Chain A, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|C Chain C, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 519
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Query: 396 DLQIEHDLLSSPKDHLEFTIVRESIRSKLEAVC---NRVVIEPKKAIRKLPRVQHLYARL 452
D +IE ++ + K+ E ++ + R+ L +C +R V + K + + V HL +R+
Sbjct: 344 DSRIELEMRTDHKELAEHLMLVDLARNDLARICQAGSRYVADLTK-VDRYSFVMHLVSRV 402
Query: 453 AGRLRSEDEEYDIMASLHPSPAVCGFPTEEARLLIAETEVFDRGMYAGPVGWFGGGES-E 511
G LR++ + + + G P A LIA RG Y G VG+F + +
Sbjct: 403 VGTLRADLDVLHAYQACMNMGTLSGAPKVRAMQLIAALRSTRRGSYGGRVGYFTAVRNLD 462
Query: 512 FAVGIRSALVEKGLGALIYAGTGIVEGSNPSLEWDE 547
+ IRSA VE G + AG G+V+ S P E DE
Sbjct: 463 TCIVIRSAYVEDG-HRTVQAGAGVVQDSIPEREADE 497
>pdb|1K0E|A Chain A, The Crystal Structure Of Aminodeoxychorismate Synthase
From Formate Grown Crystals
pdb|1K0E|B Chain B, The Crystal Structure Of Aminodeoxychorismate Synthase
From Formate Grown Crystals
pdb|1K0G|A Chain A, The Crystal Structure Of Aminodeoxychorismate Synthase
From Phosphate Grown Crystals
pdb|1K0G|B Chain B, The Crystal Structure Of Aminodeoxychorismate Synthase
From Phosphate Grown Crystals
Length = 453
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 4/161 (2%)
Query: 403 LLSSPKDHLEFTIVRESIRSKLE--AVCNRVVIEPKKAIRKLPRVQHLYARLAGRLRSED 460
L +S KD E ++ + +R+ + AV V + + P V HL + + +L +
Sbjct: 293 LANSAKDRAENLMIVDLMRNDIGRVAVAGSVKVPELFVVEPFPAVHHLVSTITAQLPEQL 352
Query: 461 EEYDIMASLHPSPAVCGFPTEEARLLIAETEVFDRGMYAGPVGWFG-GGESEFAVGIRSA 519
D++ + P ++ G P A +I E E R + G +G+ G + ++ IR+
Sbjct: 353 HASDLLRAAFPGGSITGAPKVRAMEIIDELEPQRRNAWCGSIGYLSFCGNMDTSITIRTL 412
Query: 520 LVEKGLGALIYAGTGIVEGSNPSLEWDELELKTSQFTKFLK 560
G AG GIV S E+ E K ++ K L+
Sbjct: 413 TAING-QIFCSAGGGIVADSQEEAEYQETFDKVNRILKQLE 452
>pdb|3H9M|A Chain A, Crystal Structure Of Para-Aminobenzoate Synthetase,
Component I From Cytophaga Hutchinsonii
Length = 436
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 4/192 (2%)
Query: 366 TPEQLFHRKWLKITSEXXXXXXXXXXXXXXDLQIEHDLLSSPKDHLEFTIVRESIRSKLE 425
+PE+ + I S+ D ++ L +S K+ E T + + +R+ L
Sbjct: 228 SPERFIKKTGDTIISQPIKGTSKRGKSKAEDEXLKQQLGTSEKEQSENTXIVDLVRNDLS 287
Query: 426 --AVCNRVVIEPKKAIRKLPRVQHLYARLAGRLRSEDEEYDIMASLHPSPAVCGFPTEEA 483
AV V + + P V L + + + D++ P + G P
Sbjct: 288 RTAVAGSVCVPELSGLYTFPNVHQLISTVQSTIDPACSSIDVIQQAFPXGSXTGAPKVNV 347
Query: 484 RLLIAETEVFDRGMYAGPVGWFGGGES-EFAVGIRSALVEKGLGALIY-AGTGIVEGSNP 541
I E RG ++G VG+ ++ +F V IRS L AG+ I +
Sbjct: 348 XKFIDRIESXARGPFSGTVGYXDPHDNFDFNVLIRSIFYNSATQELFXEAGSAITSYAKA 407
Query: 542 SLEWDELELKTS 553
E++E LK +
Sbjct: 408 ETEYEECLLKIT 419
>pdb|3LOG|A Chain A, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|B Chain B, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|C Chain C, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|D Chain D, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3VEH|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
Length = 451
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 402 DLLSSPKDHLEFTIVRESIRSKLEAVCNRVVIEPKKA-------IRKLPRVQHLYARLAG 454
DL S+ K+ +E I S+RS LE + + + EP A +R+ VQHL + +
Sbjct: 289 DLESNSKEIVEHAI---SVRSSLEEITD--IAEPGSAAVIDFMTVRERGSVQHLGSTIRA 343
Query: 455 RLRSEDEEYDIMASLHPSPAVCGFPTEEARLLIAETEVFDRGMYAGPVGWFGG-GESEFA 513
RL + + +L P+ G P I + RG+Y+G V G + A
Sbjct: 344 RLDPSSDRMAALEALFPAVTASGIPKAAGVEAIFRLDECPRGLYSGAVVMLSADGGLDAA 403
Query: 514 VGIRSALVEKGLGALIYAGTGIV 536
+ +R+A + G + AG GI+
Sbjct: 404 LTLRAAY-QVGGRTWLRAGAGII 425
>pdb|2G5F|A Chain A, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|B Chain B, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|C Chain C, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|D Chain D, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|3RV6|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Phenyl R-Group
pdb|3RV6|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Phenyl R-Group
pdb|3RV7|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV9|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
Length = 450
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 402 DLLSSPKDHLEFTIVRESIRSKLEAVCNRVVIEPKKA-------IRKLPRVQHLYARLAG 454
DL S+ K+ +E I S+RS LE + + + EP A +R+ VQHL + +
Sbjct: 287 DLESNSKEIVEHAI---SVRSSLEEITD--IAEPGSAAVIDFMTVRERGSVQHLGSTIRA 341
Query: 455 RLRSEDEEYDIMASLHPSPAVCGFPTEEARLLIAETEVFDRGMYAGPVGWFGG-GESEFA 513
RL + + +L P+ G P I + RG+Y+G V G + A
Sbjct: 342 RLDPSSDRMAALEALFPAVTASGIPKAAGVEAIFRLDECPRGLYSGAVVMLSADGGLDAA 401
Query: 514 VGIRSALVEKGLGALIYAGTGIV 536
+ +R+A + G + AG GI+
Sbjct: 402 LTLRAAY-QVGGRTWLRAGAGII 423
>pdb|3RV8|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3ST6|A Chain A, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|B Chain B, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|C Chain C, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|D Chain D, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
Length = 450
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 402 DLLSSPKDHLEFTIVRESIRSKLEAVCNRVVIEPKKA-------IRKLPRVQHLYARLAG 454
DL S+ K+ +E I S+RS LE + + + EP A +R+ VQHL + +
Sbjct: 287 DLESNSKEIVEHAI---SVRSSLEEITD--IAEPGSAAVIDFMTVRERGSVQHLGSTIRA 341
Query: 455 RLRSEDEEYDIMASLHPSPAVCGFPTEEARLLIAETEVFDRGMYAGPVGWFGG-GESEFA 513
RL + + +L P+ G P I + RG+Y+G V G + A
Sbjct: 342 RLDPSSDRMAALEALFPAVTASGIPKAAGVEAIFRLDECPRGLYSGAVVMLSADGGLDAA 401
Query: 514 VGIRSALVEKGLGALIYAGTGIV 536
+ +R+A + G + AG GI+
Sbjct: 402 LTLRAAY-QVGGRTWLRAGAGII 423
>pdb|2I6Y|A Chain A, Structure And Mechanism Of Mycobacterium Tuberculosis
Salicylate Synthase, Mbti
Length = 470
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 402 DLLSSPKDHLEFTIVRESIRSKLEAVCNRVVIEPKKA-------IRKLPRVQHLYARLAG 454
DL S+ K+ +E I S+RS LE + + + EP A +R+ VQHL + +
Sbjct: 307 DLESNSKEIVEHAI---SVRSSLEEITD--IAEPGSAAVIDFMTVRERGSVQHLGSTIRA 361
Query: 455 RLRSEDEEYDIMASLHPSPAVCGFPTEEARLLIAETEVFDRGMYAGPVGWFGG-GESEFA 513
RL + + +L P+ G P I + RG+Y+G V G + A
Sbjct: 362 RLDPSSDRMAALEALFPAVTASGIPKAAGVEAIFRLDECPRGLYSGAVVMLSADGGLDAA 421
Query: 514 VGIRSALVEKGLGALIYAGTGIV 536
+ +R+A + G + AG GI+
Sbjct: 422 LTLRAAY-QVGGRTWLRAGAGII 443
>pdb|3R74|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
pdb|3R74|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
Length = 645
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 439 IRKLPRVQHLYARLAGRLRSEDEEYDIMASLHPSPAVCGFPTEEARLLIAETEVFDRGMY 498
+R++ R+ H + G +E + D++ +P V G P E A +IA E RG Y
Sbjct: 273 LREMARLAHTEYFIVGH--TEADVRDLLRETMFAPTVTGSPIESATRVIARHERAGRGYY 330
Query: 499 AGPVGWFG----GGES-EFAVGIRSALVEKGLGALIYAGTGIVEGSNPSLEWDELELKTS 553
+G G GG + + A+ IR+A +++ I G+ +V S+ E E K +
Sbjct: 331 SGIAALIGRDARGGRTLDSAILIRTAEIDRAGHVRIGVGSTLVRHSDAVSEVMETHAKVA 390
Query: 554 QFTK 557
+
Sbjct: 391 ALSN 394
>pdb|3R75|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R75|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R76|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
pdb|3R76|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
Length = 645
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 439 IRKLPRVQHLYARLAGRLRSEDEEYDIMASLHPSPAVCGFPTEEARLLIAETEVFDRGMY 498
+R++ R+ H + G +E + D++ +P V G P E A +IA E RG Y
Sbjct: 273 LREMARLAHTEYFIVGH--TEADVRDLLRETMFAPTVTGSPIESATRVIARHERAGRGYY 330
Query: 499 AGPVGWFG----GGES-EFAVGIRSALVEKGLGALIYAGTGIVEGSNPSLEWDELELKTS 553
+G G GG + + A+ IR+A +++ I G+ +V S+ E E K +
Sbjct: 331 SGIAALIGRDARGGRTLDSAILIRTAEIDRAGHVRIGVGSTLVRHSDAVSEVMETHAKVA 390
Query: 554 QFTK 557
+
Sbjct: 391 ALSN 394
>pdb|2VBF|A Chain A, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBF|B Chain B, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBG|A Chain A, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
pdb|2VBG|B Chain B, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
Length = 570
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 244 TLAWDDALSWTWAKAISTLESTMDKVSSKIVRLQKEVSRTFILSNHHSPSKMHW-DLAVK 302
T +++D W ++K T +T D+V SKIVR + E + + ++M+W +L ++
Sbjct: 492 TQSYNDIPMWNYSKLPETFGATEDRVVSKIVRTENEFV-SVMKEAQADVNRMYWIELVLE 550
Query: 303 K 303
K
Sbjct: 551 K 551
>pdb|1FRT|A Chain A, Crystal Structure Of The Complex Of Rat Neonatal Fc
Receptor With Fc
pdb|3FRU|A Chain A, Neonatal Fc Receptor, Ph 6.5
pdb|3FRU|C Chain C, Neonatal Fc Receptor, Ph 6.5
pdb|3FRU|E Chain E, Neonatal Fc Receptor, Ph 6.5
pdb|1I1A|A Chain A, Crystal Structure Of The Neonatal Fc Receptor Complexed
With A Heterodimeric Fc
Length = 269
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 230 VEFDELERSSTLAVTLAWDDALSWTWAKAISTLESTMDKVSSKIVRLQKEVSRTFIL 286
+ ++ L + + W++ +SW W K + L+S I L+ +++ TF L
Sbjct: 36 LTYNNLRQEADPCGAWIWENQVSWYWEKETTDLKSKEQLFLEAIRTLENQINGTFTL 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,777,419
Number of Sequences: 62578
Number of extensions: 668152
Number of successful extensions: 1314
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1281
Number of HSP's gapped (non-prelim): 22
length of query: 576
length of database: 14,973,337
effective HSP length: 104
effective length of query: 472
effective length of database: 8,465,225
effective search space: 3995586200
effective search space used: 3995586200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)