Query 008134
Match_columns 576
No_of_seqs 289 out of 3116
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 18:56:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vsq_A Surfactin synthetase su 100.0 2.1E-66 7E-71 616.8 29.2 444 8-575 403-853 (1304)
2 3g7s_A Long-chain-fatty-acid-- 100.0 4.4E-64 1.5E-68 547.4 35.7 406 76-575 14-431 (549)
3 1amu_A GRSA, gramicidin synthe 100.0 4E-64 1.4E-68 548.5 29.9 416 42-575 2-422 (563)
4 3rix_A Luciferase, luciferin 4 100.0 1.4E-63 4.9E-68 543.5 34.0 405 76-575 15-431 (550)
5 3ni2_A 4-coumarate:COA ligase; 100.0 2.9E-63 9.9E-68 539.4 34.1 399 74-575 14-426 (536)
6 1v25_A Long-chain-fatty-acid-C 100.0 2.5E-62 8.5E-67 532.5 38.2 397 82-575 18-427 (541)
7 4dg8_A PA1221; ANL superfamily 100.0 3.1E-63 1E-67 546.4 29.8 381 78-575 23-411 (620)
8 3o83_A Peptide arylation enzym 100.0 2.7E-62 9.1E-67 532.6 34.9 393 79-575 27-431 (544)
9 3etc_A AMP-binding protein; ad 100.0 6E-62 2.1E-66 532.9 36.9 401 81-575 55-467 (580)
10 3t5a_A Long-chain-fatty-acid-- 100.0 7.6E-63 2.6E-67 529.3 27.7 401 82-575 24-474 (480)
11 3r44_A Fatty acyl COA syntheta 100.0 8.9E-62 3.1E-66 525.2 33.9 392 75-575 9-405 (517)
12 4fuq_A Malonyl COA synthetase; 100.0 9.1E-62 3.1E-66 523.4 32.5 384 86-575 4-391 (503)
13 2d1s_A Luciferase, luciferin 4 100.0 1E-61 3.4E-66 528.3 32.7 398 78-575 21-433 (548)
14 3ivr_A Putative long-chain-fat 100.0 1.8E-61 6.1E-66 522.3 33.6 381 82-575 6-390 (509)
15 4gr5_A Non-ribosomal peptide s 100.0 5.2E-62 1.8E-66 533.3 29.1 381 79-575 72-461 (570)
16 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.1E-61 3.9E-66 527.0 31.0 386 82-575 25-422 (539)
17 3c5e_A Acyl-coenzyme A synthet 100.0 7.6E-61 2.6E-65 523.4 35.4 398 81-575 37-448 (570)
18 1t5h_X 4-chlorobenzoyl COA lig 100.0 8.7E-61 3E-65 516.1 32.6 381 81-575 1-394 (504)
19 3rg2_A Enterobactin synthase c 100.0 9.9E-61 3.4E-65 527.8 33.0 396 77-575 22-426 (617)
20 1pg4_A Acetyl-COA synthetase; 100.0 1.9E-60 6.5E-65 528.1 35.3 413 82-575 76-509 (652)
21 3tsy_A Fusion protein 4-coumar 100.0 1.1E-60 3.7E-65 554.1 31.9 449 7-575 9-473 (979)
22 1ry2_A Acetyl-coenzyme A synth 100.0 4E-60 1.4E-64 525.9 34.2 415 82-575 82-518 (663)
23 2v7b_A Benzoate-coenzyme A lig 100.0 2.5E-60 8.6E-65 515.7 31.8 392 81-575 23-421 (529)
24 3e7w_A D-alanine--poly(phospho 100.0 5.3E-60 1.8E-64 510.9 31.3 382 83-575 2-390 (511)
25 3l8c_A D-alanine--poly(phospho 100.0 5.2E-60 1.8E-64 512.4 27.2 383 81-575 3-395 (521)
26 3fce_A D-alanine--poly(phospho 100.0 2.5E-60 8.6E-65 513.7 24.7 380 83-575 2-391 (512)
27 3kxw_A Saframycin MX1 syntheta 100.0 1.2E-59 4.2E-64 517.4 29.7 401 79-575 8-450 (590)
28 3ite_A SIDN siderophore synthe 100.0 1.9E-58 6.6E-63 504.6 32.4 396 78-575 16-419 (562)
29 3nyq_A Malonyl-COA ligase; A/B 100.0 1.3E-59 4.6E-64 506.5 19.5 373 80-575 20-397 (505)
30 3gqw_A Fatty acid AMP ligase; 100.0 1.8E-57 6E-62 498.8 36.3 398 74-575 13-453 (576)
31 3ipl_A 2-succinylbenzoate--COA 100.0 3.7E-58 1.3E-62 495.4 23.1 383 83-575 2-390 (501)
32 4gs5_A Acyl-COA synthetase (AM 100.0 3.7E-35 1.3E-39 301.4 15.8 206 274-574 36-242 (358)
33 2y4o_A Phenylacetate-coenzyme 100.0 5.7E-34 2E-38 301.7 15.3 242 252-575 72-322 (443)
34 3qov_A Phenylacetate-coenzyme 100.0 5.7E-33 2E-37 293.5 17.0 226 270-574 80-313 (436)
35 2y27_A Phenylacetate-coenzyme 100.0 1.2E-32 4E-37 291.2 18.8 242 252-575 70-320 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 4.1E-30 1.4E-34 265.5 14.8 209 271-535 87-321 (369)
37 4b2g_A GH3-1 auxin conjugating 96.4 0.021 7.2E-07 60.9 12.3 31 273-303 97-128 (609)
38 4eql_A 4-substituted benzoates 96.2 0.078 2.7E-06 56.4 15.2 30 273-302 91-121 (581)
39 4epl_A Jasmonic acid-amido syn 95.8 0.12 4.2E-06 54.7 14.6 30 273-302 96-126 (581)
40 2y27_A Phenylacetate-coenzyme 92.6 1.2 3.9E-05 45.7 13.3 105 129-234 108-220 (437)
41 3qov_A Phenylacetate-coenzyme 92.2 1.2 4E-05 45.7 12.7 105 129-234 104-216 (436)
42 2y4o_A Phenylacetate-coenzyme 92.0 1.4 4.8E-05 45.2 12.9 105 129-234 110-222 (443)
43 3hgu_A EHPF; phenazine, antibi 81.2 7.9 0.00027 38.3 10.6 87 129-217 109-220 (369)
44 1mdb_A 2,3-dihydroxybenzoate-A 79.7 30 0.001 36.1 15.1 102 129-234 200-308 (539)
45 3ipl_A 2-succinylbenzoate--COA 79.1 30 0.001 35.6 14.7 119 95-231 161-281 (501)
46 2d1s_A Luciferase, luciferin 4 78.9 14 0.00048 38.8 12.2 102 129-232 210-317 (548)
47 3o83_A Peptide arylation enzym 77.4 26 0.00088 36.7 13.7 102 129-234 209-317 (544)
48 3r44_A Fatty acyl COA syntheta 74.9 33 0.0011 35.6 13.6 100 129-233 188-293 (517)
49 3rg2_A Enterobactin synthase c 70.9 60 0.002 34.5 14.7 102 129-234 202-312 (617)
50 1t5h_X 4-chlorobenzoyl COA lig 70.1 25 0.00086 36.3 11.2 101 129-233 171-281 (504)
51 3rix_A Luciferase, luciferin 4 67.7 28 0.00097 36.4 11.1 105 129-234 208-317 (550)
52 4gs5_A Acyl-COA synthetase (AM 67.6 34 0.0012 33.5 11.1 97 129-231 55-155 (358)
53 3ivr_A Putative long-chain-fat 67.6 72 0.0025 32.7 14.2 98 129-231 178-279 (509)
54 3fce_A D-alanine--poly(phospho 66.8 25 0.00087 36.3 10.5 102 129-233 162-270 (512)
55 3e7w_A D-alanine--poly(phospho 65.4 44 0.0015 34.4 12.0 102 129-233 161-269 (511)
56 1v25_A Long-chain-fatty-acid-C 65.0 34 0.0012 35.7 11.1 104 129-233 194-302 (541)
57 1pg4_A Acetyl-COA synthetase; 65.0 36 0.0012 36.6 11.4 103 130-234 275-388 (652)
58 3g7s_A Long-chain-fatty-acid-- 62.8 63 0.0022 33.6 12.7 101 129-233 198-305 (549)
59 3ni2_A 4-coumarate:COA ligase; 60.6 41 0.0014 35.0 10.7 105 129-234 196-307 (536)
60 3kxw_A Saframycin MX1 syntheta 60.6 49 0.0017 34.7 11.5 122 95-233 165-298 (590)
61 3c5e_A Acyl-coenzyme A synthet 60.4 41 0.0014 35.4 10.7 103 129-234 224-332 (570)
62 4gr5_A Non-ribosomal peptide s 58.9 40 0.0014 35.4 10.3 102 129-234 232-336 (570)
63 1ry2_A Acetyl-coenzyme A synth 58.2 40 0.0014 36.3 10.3 103 130-234 281-394 (663)
64 4dg8_A PA1221; ANL superfamily 57.6 52 0.0018 35.1 11.0 122 95-234 162-286 (620)
65 3etc_A AMP-binding protein; ad 56.1 44 0.0015 35.3 10.0 85 150-234 261-351 (580)
66 3nyq_A Malonyl-COA ligase; A/B 54.5 79 0.0027 32.5 11.6 85 129-218 173-259 (505)
67 3tbh_A O-acetyl serine sulfhyd 47.5 71 0.0024 31.0 9.2 66 146-211 61-127 (334)
68 1amu_A GRSA, gramicidin synthe 46.7 55 0.0019 34.3 8.9 100 130-234 201-303 (563)
69 3ite_A SIDN siderophore synthe 46.4 39 0.0013 35.4 7.7 106 129-234 193-304 (562)
70 3tsy_A Fusion protein 4-coumar 43.4 94 0.0032 35.1 10.7 105 129-234 243-354 (979)
71 3t5a_A Long-chain-fatty-acid-- 40.1 1.1E+02 0.0036 31.0 9.7 109 273-388 37-148 (480)
72 2v7b_A Benzoate-coenzyme A lig 38.7 46 0.0016 34.5 6.7 87 129-218 201-290 (529)
73 4fuq_A Malonyl COA synthetase; 36.8 1.6E+02 0.0055 30.0 10.5 85 129-219 173-259 (503)
74 3vc3_A Beta-cyanoalnine syntha 36.8 1.3E+02 0.0045 29.2 9.2 71 141-211 72-142 (344)
75 3gqw_A Fatty acid AMP ligase; 36.0 1E+02 0.0036 32.0 9.0 88 129-218 194-286 (576)
76 3l8c_A D-alanine--poly(phospho 34.0 2.3E+02 0.0078 28.9 11.2 103 129-232 163-272 (521)
77 2vsq_A Surfactin synthetase su 30.9 1.3E+02 0.0045 35.2 9.5 122 95-234 605-730 (1304)
78 4eez_A Alcohol dehydrogenase 1 30.7 2.2E+02 0.0075 27.2 9.8 77 131-210 137-216 (348)
79 3ijw_A Aminoglycoside N3-acety 29.5 88 0.003 29.3 6.1 45 141-185 18-72 (268)
80 3ju7_A Putative PLP-dependent 28.8 1.2E+02 0.004 29.8 7.5 61 146-209 69-136 (377)
81 1z7w_A Cysteine synthase; tran 28.5 2.2E+02 0.0075 27.1 9.2 65 147-211 57-122 (322)
82 4aec_A Cysteine synthase, mito 27.5 2.2E+02 0.0076 28.6 9.2 64 147-210 165-229 (430)
83 4h1h_A LMO1638 protein; MCCF-l 25.2 1.7E+02 0.0058 28.2 7.6 60 151-210 8-86 (327)
84 3jv7_A ADH-A; dehydrogenase, n 24.8 3.2E+02 0.011 26.1 9.8 78 131-211 143-225 (345)
85 2q3b_A Cysteine synthase A; py 24.7 3E+02 0.01 26.0 9.4 64 147-211 58-122 (313)
86 1ofu_X SULA, hypothetical prot 24.5 2.1E+02 0.0071 23.0 6.8 50 144-193 47-98 (119)
87 2nyg_A YOKD protein; PFAM02522 24.1 1.3E+02 0.0044 28.2 6.2 22 143-164 18-39 (273)
88 3b8x_A WBDK, pyridoxamine 5-ph 23.2 3.5E+02 0.012 26.0 9.9 54 151-208 76-134 (390)
89 2jtq_A Phage shock protein E; 23.2 2.1E+02 0.0073 20.6 6.5 45 129-180 22-66 (85)
90 3sr3_A Microcin immunity prote 23.1 2E+02 0.0068 27.8 7.6 59 151-210 9-87 (336)
91 3tqh_A Quinone oxidoreductase; 23.0 2.2E+02 0.0075 26.9 8.1 75 131-210 126-204 (321)
92 2egu_A Cysteine synthase; O-ac 23.0 3.2E+02 0.011 25.7 9.2 64 147-211 56-120 (308)
93 3tla_A MCCF; serine protease, 21.9 2E+02 0.007 28.2 7.5 60 151-210 39-117 (371)
94 2v03_A Cysteine synthase B; py 21.8 3.5E+02 0.012 25.4 9.1 63 147-210 52-115 (303)
95 1h2b_A Alcohol dehydrogenase; 21.5 3.1E+02 0.01 26.4 8.9 64 145-211 175-240 (359)
96 3sma_A FRBF; N-acetyl transfer 21.5 1.5E+02 0.0052 27.9 6.1 49 130-185 21-79 (286)
97 2pqm_A Cysteine synthase; OASS 20.5 3E+02 0.01 26.5 8.5 63 148-211 70-133 (343)
98 3s2e_A Zinc-containing alcohol 20.3 2.8E+02 0.0095 26.4 8.2 76 131-210 140-218 (340)
99 3ri6_A O-acetylhomoserine sulf 20.2 3.1E+02 0.011 27.3 8.8 60 159-218 100-162 (430)
100 3two_A Mannitol dehydrogenase; 20.2 2.7E+02 0.0092 26.7 8.1 73 131-207 150-225 (348)
No 1
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2.1e-66 Score=616.83 Aligned_cols=444 Identities=17% Similarity=0.193 Sum_probs=363.8
Q ss_pred CcccccccccCCCcccchhhheeeccceeeehhhhhccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHH
Q 008134 8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAAL 87 (576)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~ 87 (576)
.||+++|++..++.|...+..+++ ..++. |..+ +++++++++.|+++++..+| .+..+.+. .+++++
T Consensus 403 ~y~~~lf~~~~i~~l~~~~~~lL~----~l~~~--p~~~---~~~~~~l~~~e~~~~~~~~~---~~~~~~~~-~~l~~~ 469 (1304)
T 2vsq_A 403 AYNENVFDEAFILRLKSQLLTAIQ----QLIQN--PDQP---VSTINLVDDREREFLLTGLN---PPAQAHET-KPLTYW 469 (1304)
T ss_dssp EEETTTSCHHHHHHHHHHHHHHHH----HHHHS--TTSB---GGGCCCCCHHHHHHHHTTTS---CCCCCCCC-CCHHHH
T ss_pred EECCccCCHHHHHHHHHHHHHHHH----HhccC--cccc---ccccCCCCHHHHHHHHHhcC---CCCCCCCC-CCHHHH
Confidence 588889998888887777777766 23344 6666 99999999999999888888 55555565 799999
Q ss_pred HHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH
Q 008134 88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE 167 (576)
Q Consensus 88 ~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~ 167 (576)
|+++++++||++|+++ +++ ++||+||+++++++|++|+++|+++|++|+|+++||++
T Consensus 470 ~~~~~~~~p~~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~ 526 (1304)
T 2vsq_A 470 FKEAVNANPDAPALTY------------SGQ-----------TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLE 526 (1304)
T ss_dssp HHHHHHHCTTSEEEES------------SSC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHH
T ss_pred HHHHHHhCCCCeEEEE------------CCe-----------eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHH
Confidence 9999999999999986 333 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCC
Q 008134 168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI 247 (576)
Q Consensus 168 ~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~ 247 (576)
+++++|||+|+|++||||||.+|.+++.+++++++++++|++......+. .++....++.++...
T Consensus 527 ~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~----------- 591 (1304)
T 2vsq_A 527 LVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQT----------- 591 (1304)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCGG-----------
T ss_pred HHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEecccc-----------
Confidence 99999999999999999999999999999999999999999987543321 122222333322110
Q ss_pred CCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChH
Q 008134 248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA 327 (576)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~ 327 (576)
. .......+.....++++|||+|||||||+||||+++|+++.+. .+....+ .++++|++++++|++
T Consensus 592 ---------~---~~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-~~~~~d~~l~~~~~~ 657 (1304)
T 2vsq_A 592 ---------R---FEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-AFSDQDTFLSVSNYA 657 (1304)
T ss_dssp ---------G---GGSCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-CCCTTCEEEECSCTT
T ss_pred ---------c---cccccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-CCCCCCEEEEECCcc
Confidence 0 0011111234567899999999999999999999999999876 4444555 889999999999999
Q ss_pred HHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q 008134 328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI 407 (576)
Q Consensus 328 ~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 407 (576)
|+.+++.++.+|+.|+++++.+.....+. ..+.+.|.++++|+++++|++++.+.+.....
T Consensus 658 fd~~~~~~~~~l~~G~~l~~~~~~~~~~~-----~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~-------------- 718 (1304)
T 2vsq_A 658 FDAFTFDFYASMLNAARLIIADEHTLLDT-----ERLTDLILQENVNVMFATTALFNLLTDAGEDW-------------- 718 (1304)
T ss_dssp STHHHHHHHHHHTTTCEEEECCGGGTTCH-----HHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH--------------
T ss_pred HHHHHHHHHHHHHcCCEEEECChhhcCCH-----HHHHHHHHHcCCcEEEccHHHHHHHHhhchhc--------------
Confidence 99999999999999999999766544443 23444599999999999999999886531100
Q ss_pred HHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecccCcccccCCc
Q 008134 408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGS 486 (576)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~ 486 (576)
+ ++||.+++|||++++++.+.|.+.+ +++++|.||+||+++.+
T Consensus 719 --------~----------------------------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 762 (1304)
T 2vsq_A 719 --------M----------------------------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFA 762 (1304)
T ss_dssp --------H----------------------------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCS
T ss_pred --------C----------------------------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHh
Confidence 0 2899999999999999999888776 47899999999999887
Q ss_pred cccCCCC----CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccc--cccc
Q 008134 487 TFSEWDD----PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF--HCVW 560 (576)
Q Consensus 487 ~~~~~~~----~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~--~g~~ 560 (576)
+...... ....++|+|++|++++|+| ++++. +|+|++|||||+|+++++||+|+|++|+++|+.+| +|.|
T Consensus 763 ~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~---~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~ 838 (1304)
T 2vsq_A 763 TAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQL---QPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGET 838 (1304)
T ss_dssp EEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCB---CCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCE
T ss_pred eeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCC---CCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCe
Confidence 7654322 2347899999999999999 65554 67999999999999999999999999999998776 5788
Q ss_pred eeeeCCeecccCccC
Q 008134 561 MLCICLYVSCDKTLE 575 (576)
Q Consensus 561 ~~~TGDlg~~d~d~e 575 (576)
||||||+|||++||.
T Consensus 839 ~yrTGDl~~~~~dG~ 853 (1304)
T 2vsq_A 839 LYRTGDLARWLPDGT 853 (1304)
T ss_dssp EEEEEEEEEECTTSC
T ss_pred eEecCCeEEEcCCCe
Confidence 999999999999985
No 2
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=4.4e-64 Score=547.43 Aligned_cols=406 Identities=20% Similarity=0.234 Sum_probs=338.4
Q ss_pred ccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCC
Q 008134 76 VPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVD 155 (576)
Q Consensus 76 ~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~g 155 (576)
.+++. .++.++|+++++++||++|+++.+ +. + ..+..+++||+||.++++++|++|+++|+++|
T Consensus 14 ~~~~~-~~l~~~l~~~a~~~p~~~A~~~~~-----------~~-~---~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~g 77 (549)
T 3g7s_A 14 LYYPK-ISLADRIDAAAEKFGEKTAIISAE-----------PK-F---PSEFPESMNFLEICEVTKKLASGISRKGVRKG 77 (549)
T ss_dssp CCCCC-CCTTHHHHHHHHHHTTSEEEEEES-----------SC-C---CCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred CCcCC-CCHHHHHHHHHHhCCCceEEEeCC-----------Cc-c---cccccceeeHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34444 799999999999999999999752 10 0 01223589999999999999999999999999
Q ss_pred CEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCC
Q 008134 156 TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND 235 (576)
Q Consensus 156 d~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~ 235 (576)
|+|+|+++|++++++++|||+++|+++|||+|.++.+++.+++++++++++|++....+.+........ ...++..+..
T Consensus 78 d~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 156 (549)
T 3g7s_A 78 EHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE 156 (549)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999988887777665544 4555554421
Q ss_pred CCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCC-CCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCC
Q 008134 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (576)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 314 (576)
..++.++......... .....+ +++++|+|||||||.||||+++|+++++.+......+ ++
T Consensus 157 ----------------~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~ 218 (549)
T 3g7s_A 157 ----------------VNSLSEVMDSGSEDFE-NVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GL 218 (549)
T ss_dssp ----------------SSCHHHHHHHSCSCCC-CCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-CC
T ss_pred ----------------CcCHHHHHhcCccccc-cccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-CC
Confidence 2346666654433322 223334 8999999999999999999999999999999988888 99
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHhCceEEE---CCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHH
Q 008134 315 GRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (576)
Q Consensus 315 ~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~ 391 (576)
.++|++++.+|++|++++..++.++..|+++++ .++..+.+. ++++++|+++++|+++..+.+...
T Consensus 219 ~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~ 287 (549)
T 3g7s_A 219 SHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAEN-----------IEKYKGTFSWAVPPALNVLVNTLE 287 (549)
T ss_dssp CTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHH-----------HHHhCCeEEEeCCHHHHHHHhhhh
Confidence 999999999999999999888889999999998 344555555 999999999999999999877543
Q ss_pred HHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhh---
Q 008134 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC--- 468 (576)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~--- 468 (576)
.... ....++||.+++||+++++++.++|.+.
T Consensus 288 ~~~~---------------------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~ 322 (549)
T 3g7s_A 288 SSNK---------------------------------------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAE 322 (549)
T ss_dssp HSCC---------------------------------------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHH
T ss_pred hhcc---------------------------------------------cCCccceeEEEeCCccCCHHHHHHHHHHHHh
Confidence 2100 0012489999999999999999998887
Q ss_pred -hC---CceecccCcccccCCccccCCCC-CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccC
Q 008134 469 -MG---APIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN 543 (576)
Q Consensus 469 -~~---~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~ 543 (576)
++ ++++|.||+||++++++...... ....++|+|++|++++|+|+++++. +++|+.|||+|+|+++++|||+
T Consensus 323 ~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~---~~~g~~GEl~v~g~~v~~GY~~ 399 (549)
T 3g7s_A 323 KCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRE---LGVGESGEIVIRGPNIFKGYWK 399 (549)
T ss_dssp HSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCE---ECTTCCEEEEEESTTSCSEETT
T ss_pred hcCCccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcC---CCCCCceEEEEECcchhhhhCC
Confidence 56 89999999999998877654433 3457999999999999999777765 5699999999999999999999
Q ss_pred CcccchhhhcccccccceeeeCCeecccCccC
Q 008134 544 NPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 544 ~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e 575 (576)
+|+.|+++|..+++|.+||||||+|++|+||.
T Consensus 400 ~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~ 431 (549)
T 3g7s_A 400 REKENQECWWYDEKGRKFFRTGDVGFIDEEGF 431 (549)
T ss_dssp CTTGGGTSEEECTTCCEEEEEEEEEEECTTSC
T ss_pred ChhhhhhhhhccCCCCceEccCcEEEEcCCce
Confidence 99999999977788899999999999999985
No 3
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=4e-64 Score=548.51 Aligned_cols=416 Identities=18% Similarity=0.178 Sum_probs=325.0
Q ss_pred hhccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCccee
Q 008134 42 VARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFE 121 (576)
Q Consensus 42 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~ 121 (576)
+...+..-|.++..+++.|+++++..++ ....+++...+++++|+++++++||++|+++ ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~l~~~l~~~a~~~p~~~Al~~------------~~---- 62 (563)
T 1amu_A 2 VNSSKSILIHAQNKNGTHEEEQYLFAVN---NTKAEYPRDKTIHQLFEEQVSKRPNNVAIVC------------EN---- 62 (563)
T ss_dssp ---------------CCCHHHHHHHHTT---CCCCCCCTTCCHHHHHHHHHHHCTTSEEEEE------------TT----
T ss_pred cCcCCCccccccccCCHHHHHHHHHHhC---CCCCCCCCCCcHHHHHHHHHHHCCCCeEEEe------------CC----
Confidence 3344444488899999999988877777 5666677778999999999999999999986 33
Q ss_pred eecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhcc
Q 008134 122 KLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNET 201 (576)
Q Consensus 122 ~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~ 201 (576)
+++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++|+++||++|.++.+++.++++++
T Consensus 63 -------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~ 135 (563)
T 1amu_A 63 -------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDS 135 (563)
T ss_dssp -------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHH
T ss_pred -------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhc
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEE
Q 008134 202 QVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIM 281 (576)
Q Consensus 202 ~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~ 281 (576)
+++++|++.+....+... .....++.++.... .. ........+..++++++|+
T Consensus 136 ~~~~li~~~~~~~~~~~~----~~~~~~~~~~~~~~---------------------~~--~~~~~~~~~~~~~d~a~i~ 188 (563)
T 1amu_A 136 QARMLLTQKHLVHLIHNI----QFNGQVEIFEEDTI---------------------KI--REGTNLHVPSKSTDLAYVI 188 (563)
T ss_dssp TCSEEEECGGGHHHHTTS----CCCSEEEECCCSTT---------------------TT--SCCSCCCCCCCTTSEEEEE
T ss_pred CCCEEEEcCchhhhhhhc----cccCceeeecchhh---------------------cc--ccCccCCCCCCCCCeEEEE
Confidence 999999998765443321 11122332221100 00 0111112345688999999
Q ss_pred eecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhc
Q 008134 282 YTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIK 361 (576)
Q Consensus 282 ~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~ 361 (576)
|||||||.||||+++|+++.+.+.+....+ ++.++|++++++|++|+.+++.++.+|+.|+++++.+.....+.
T Consensus 189 ~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~----- 262 (563)
T 1amu_A 189 YTSGTTGNPKGTMLEHKGISNLKVFFENSL-NVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDF----- 262 (563)
T ss_dssp EEC-----CEEEEEESHHHHHHHHHHHHTS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCH-----
T ss_pred ECCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCH-----
Confidence 999999999999999999999988888888 89999999999999999999888999999999999544322222
Q ss_pred cCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHH
Q 008134 362 KGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRA 441 (576)
Q Consensus 362 ~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 441 (576)
..+...++++++|++.++|+++..+...
T Consensus 263 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~---------------------------------------------------- 290 (563)
T 1amu_A 263 VKFEQYINQKEITVITLPPTYVVHLDPE---------------------------------------------------- 290 (563)
T ss_dssp HHHHHHHHHTTCCEEEECHHHHTTSCTT----------------------------------------------------
T ss_pred HHHHHHHHHcCCcEEEeCHHHHHHHHhc----------------------------------------------------
Confidence 2233449999999999999998765321
Q ss_pred HhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCccccCCCC---CCCCccCCCCCCcEEEEeecCCCCC
Q 008134 442 VLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD---PSVGRVGPPVPCCYIKLVSWDEGGY 518 (576)
Q Consensus 442 ~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p~~~~~~~ivd~~~~~~ 518 (576)
..++||.+++||+++++++.++|.+. ++++|.||+||+++.++...... ....++|+|++|++++|+| ++++.
T Consensus 291 -~~~~lr~~~~gG~~l~~~~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~ 366 (563)
T 1amu_A 291 -RILSIQTLITAGSATSPSLVNKWKEK--VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQL 366 (563)
T ss_dssp -TCCSCSEEEEESSCCCHHHHHHHTTT--SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCB
T ss_pred -ccccccEEEEEEecCCHHHHHHHHhC--CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCC
Confidence 01489999999999999999999874 78999999999987766543322 2447899999999999999 66654
Q ss_pred cCCCCCCCCceEEEccCcccccccCCcccchhhhcccc--cccceeeeCCeecccCccC
Q 008134 519 KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF--HCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 519 ~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~--~g~~~~~TGDlg~~d~d~e 575 (576)
+++|+.|||+|+|+++++|||++|+.|+++|..++ +|.+||+|||+|++|+||.
T Consensus 367 ---~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~ 422 (563)
T 1amu_A 367 ---KSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGN 422 (563)
T ss_dssp ---CCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSC
T ss_pred ---CCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCe
Confidence 66999999999999999999999999999996443 4567999999999999985
No 4
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.4e-63 Score=543.51 Aligned_cols=405 Identities=23% Similarity=0.279 Sum_probs=332.8
Q ss_pred ccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCC
Q 008134 76 VPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVD 155 (576)
Q Consensus 76 ~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~g 155 (576)
.+++. .|+.++|.++++++|+++|++... ++ ...+++||+||.++++++|++|+++|+++|
T Consensus 15 ~~~~~-~tl~~~l~~~a~~~p~~~a~~a~~----------~~--------~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~g 75 (550)
T 3rix_A 15 YPLED-GTAGEQLHKAMKRYALVPGTIAFT----------DA--------HIEVNITYAEYFEMSVRLAEAMKRYGLNTN 75 (550)
T ss_dssp SCCCC-SCHHHHHHHHHHHHHTSTTCEEEE----------ET--------TTCCEEEHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred CCccc-CCHHHHHHHHHHhCCCCceEEEee----------ec--------CCCcEeEHHHHHHHHHHHHHHHHHhCCCCC
Confidence 33444 799999999999999999986321 11 111479999999999999999999999999
Q ss_pred CEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCC
Q 008134 156 TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND 235 (576)
Q Consensus 156 d~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~ 235 (576)
|+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++.+..+.+......++.+..++.++..
T Consensus 76 d~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (550)
T 3rix_A 76 HRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK 155 (550)
T ss_dssp CEEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCS
T ss_pred CEEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999888888877777888888887654
Q ss_pred CCCCCCCCCCCCCCceEeehHHHHHcCCCCC------CCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHh
Q 008134 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSP------VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT 309 (576)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~ 309 (576)
... ....++.++........ .+.....++++++|+|||||||.||||+++|+++++.+.....
T Consensus 156 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~ 224 (550)
T 3rix_A 156 TDY-----------QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARD 224 (550)
T ss_dssp SCB-----------TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTC
T ss_pred ccc-----------cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhh
Confidence 221 12345566554322211 1112234678999999999999999999999999988877765
Q ss_pred hC--CCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHH
Q 008134 310 LI--PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFD 384 (576)
Q Consensus 310 ~~--~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~ 384 (576)
.+ ..+.++|++++.+|++|+++++..+.+++.|+++++. ++..+.+. ++++++|+++++|+++.
T Consensus 225 ~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~ 293 (550)
T 3rix_A 225 PIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRS-----------LQDYKIQSALLVPTLFS 293 (550)
T ss_dssp TTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCSEEEECHHHHH
T ss_pred hhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHH-----------HHHcCCeEEEeCcHHHH
Confidence 52 2678899999999999999998889999999999994 34444444 99999999999999999
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHH
Q 008134 385 RVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF 464 (576)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~ 464 (576)
.+...... .+...++||.+++||+++++++.++
T Consensus 294 ~l~~~~~~-----------------------------------------------~~~~l~~lr~i~~gG~~l~~~~~~~ 326 (550)
T 3rix_A 294 FFAKSTLI-----------------------------------------------DKYDLSNLHEIASGGAPLSKEVGEA 326 (550)
T ss_dssp HHHHCCGG-----------------------------------------------GGSCCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHhCccc-----------------------------------------------cccCcccccEEEEecCCCCHHHHHH
Confidence 88653110 0111258999999999999999999
Q ss_pred HHhhhCCc-eecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccC
Q 008134 465 INICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN 543 (576)
Q Consensus 465 ~~~~~~~~-l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~ 543 (576)
|.+.++.. ++|.||+||+++.++.........+++|+|+|+++++|+|++++.. +++|+.|||+|+|++++.|||+
T Consensus 327 ~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~---~~~g~~GEl~v~g~~v~~GY~~ 403 (550)
T 3rix_A 327 VAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKT---LGVNQRGELCVRGPMIMSGYVN 403 (550)
T ss_dssp HHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCB---CCTTCCEEEEEESTTSCSEETT
T ss_pred HHHHcCCCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcC---CCCCCCeEEEEeCCCcchhhcC
Confidence 99998875 8999999999988877766666778999999999999999766655 5699999999999999999999
Q ss_pred CcccchhhhcccccccceeeeCCeecccCccC
Q 008134 544 NPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 544 ~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e 575 (576)
+|+.|++.| +.+| ||+|||+|++|+||.
T Consensus 404 ~~~~t~~~~--~~~g--~~~TGDl~~~~~dG~ 431 (550)
T 3rix_A 404 NPEATNALI--DKDG--WLHSGDIAYWDEDEH 431 (550)
T ss_dssp CHHHHHHHB--CTTS--CEEEEEEEEECTTCC
T ss_pred Chhhhhhhc--CCCC--CeecCcEEEEeCCce
Confidence 999999999 6677 999999999999984
No 5
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=2.9e-63 Score=539.41 Aligned_cols=399 Identities=22% Similarity=0.268 Sum_probs=329.3
Q ss_pred ccccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCC
Q 008134 74 VEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHN 153 (576)
Q Consensus 74 ~~~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~ 153 (576)
+..+.|...+++++|+++++++||++|+++.+ +| +++||+||.++++++|++|+++|++
T Consensus 14 ~~~~~p~~~~l~~~l~~~a~~~p~~~a~~~~~----------~~-----------~~~Ty~el~~~~~~lA~~L~~~Gv~ 72 (536)
T 3ni2_A 14 PDIYIPKNLPLHSYVLENLSNHSSKPCLINGA----------NG-----------DVYTYADVELTARRVASGLNKIGIQ 72 (536)
T ss_dssp CCCCCCSSCCHHHHHTTTGGGSTTSEEEEETT----------TC-----------CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHHHhhcCCCceEEEECC----------CC-----------CEEEHHHHHHHHHHHHHHHHHcCCC
Confidence 44556666899999999999999999998631 23 3799999999999999999999999
Q ss_pred CCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEec
Q 008134 154 VDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFE 233 (576)
Q Consensus 154 ~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~ 233 (576)
+||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++....+.+....... . ..++.++
T Consensus 73 ~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~-~~~~~~~ 150 (536)
T 3ni2_A 73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-D-VKVMCVD 150 (536)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-T-CEEEESS
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-C-ceEEEec
Confidence 9999999999999999999999999999999999999999999999999999999998877776654332 1 2344444
Q ss_pred CCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHh----
Q 008134 234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT---- 309 (576)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---- 309 (576)
.... ....++++...... ..+.....++++++|+|||||||.||||+++|+++++.+.....
T Consensus 151 ~~~~-------------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~ 216 (536)
T 3ni2_A 151 SAPD-------------GCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP 216 (536)
T ss_dssp CCCT-------------TCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSC
T ss_pred CCCC-------------CccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccc
Confidence 3211 23456666543322 22334567899999999999999999999999999988776654
Q ss_pred hCCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHH
Q 008134 310 LIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR 385 (576)
Q Consensus 310 ~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~ 385 (576)
.+ .+.++|++++.+|++|++++.. ++.+|..|+++++.+ +..+.+. ++++++|++.++|+++..
T Consensus 217 ~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~ 284 (536)
T 3ni2_A 217 NL-YFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGL-----------IEKYKVSIAPVVPPVMMS 284 (536)
T ss_dssp SS-CCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHH
T ss_pred cc-cCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHH-----------HHHhCCeEEEccHHHHHH
Confidence 33 6789999999999999999865 788899999999943 3334444 999999999999999998
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHH
Q 008134 386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI 465 (576)
Q Consensus 386 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~ 465 (576)
+.+.... .....++||.+++||+++++++.++|
T Consensus 285 l~~~~~~-----------------------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~ 317 (536)
T 3ni2_A 285 IAKSPDL-----------------------------------------------DKHDLSSLRMIKSGGAPLGKELEDTV 317 (536)
T ss_dssp HHTCSCG-----------------------------------------------GGSCCTTCCEEEEESSCCCHHHHHHH
T ss_pred HHhCccc-----------------------------------------------ccCCCccceEEEECCCCCCHHHHHHH
Confidence 8653110 01112589999999999999999999
Q ss_pred Hhhh-CCceecccCcccccCCcccc-----CCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccc
Q 008134 466 NICM-GAPIGQAYGLTETCAGSTFS-----EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTA 539 (576)
Q Consensus 466 ~~~~-~~~l~~~YG~TE~~~~~~~~-----~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~ 539 (576)
++.+ +++++|.||+||++++++.. .......+++|+|++|++++|+|++++.. +++|+.|||+|+|+++++
T Consensus 318 ~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~---~~~g~~GEl~v~g~~v~~ 394 (536)
T 3ni2_A 318 RAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGAS---LPRNQPGEICIRGDQIMK 394 (536)
T ss_dssp HHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCB---CCTTCCEEEEEESTTSCS
T ss_pred HHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcC---CCCCCccEEEEeCcccch
Confidence 9988 89999999999998765433 22234558999999999999999766665 569999999999999999
Q ss_pred cccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134 540 GYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 540 GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e 575 (576)
|||++|+.|++.| +.+| ||||||+|++|+||.
T Consensus 395 GY~~~p~~t~~~~--~~~g--~~~TGDl~~~~~dG~ 426 (536)
T 3ni2_A 395 GYLNDPEATSRTI--DKEG--WLHTGDIGYIDDDDE 426 (536)
T ss_dssp EETTCHHHHHHHB--CTTS--CEEEEEEEEECTTSC
T ss_pred hhcCChhHHHhhc--cCCC--ceEcccEEEEcCCce
Confidence 9999999999999 5667 999999999999985
No 6
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=2.5e-62 Score=532.48 Aligned_cols=397 Identities=20% Similarity=0.255 Sum_probs=323.8
Q ss_pred CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (576)
Q Consensus 82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~ 161 (576)
.++.++|+++++++||++|+++.+ + +..+++||+||.++++++|++|+++|+++||+|+++
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~~----------~---------~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~ 78 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRLH----------T---------GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATL 78 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEECT----------T---------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CCHHHHHHHHHHhCCCceEEEEec----------C---------CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 689999999999999999998531 1 122579999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCC
Q 008134 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (576)
Q Consensus 162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~ 241 (576)
++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.+..+.+......++.++.++.++.....
T Consensus 79 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 155 (541)
T 1v25_A 79 GFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE--- 155 (541)
T ss_dssp CCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT---
T ss_pred cCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCc---
Confidence 99999999999999999999999999999999999999999999999998887777766666667777776543210
Q ss_pred CCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHH--HhhCCCCCCCcE
Q 008134 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI--KTLIPNPGRSDV 319 (576)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~~d~ 319 (576)
...+++++...... .....++++++|+|||||||.||||+++|+++++..... ...+ .++++|+
T Consensus 156 ---------~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~d~ 221 (541)
T 1v25_A 156 ---------GYLAYEEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-ALSEKDV 221 (541)
T ss_dssp ---------TCEEHHHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-CCCTTCE
T ss_pred ---------ccccHHHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-cCCCCCE
Confidence 12356555432211 134567899999999999999999999999998776653 2345 7889999
Q ss_pred EEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCc
Q 008134 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (576)
Q Consensus 320 ~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~ 399 (576)
+++.+|++|++++..++.+++.|+++++.+.. .+ +..+++.++++++|+++++|+++..+.+......
T Consensus 222 ~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~--~~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----- 289 (541)
T 1v25_A 222 VLPVVPMFHVNAWCLPYAATLVGAKQVLPGPR--LD-----PASLVELFDGEGVTFTAGVPTVWLALADYLESTG----- 289 (541)
T ss_dssp EEECSCTTSHHHHTHHHHHHHHTCEEEECTTC--CS-----HHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT-----
T ss_pred EEEeccchhhhHHHHHHHHHhcCceEEeeCCC--CC-----HHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC-----
Confidence 99999999999987788899999999994321 11 1223334999999999999999999876533210
Q ss_pred hhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCc
Q 008134 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479 (576)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~ 479 (576)
...++||.+++||+++++++.++| +.+|++++|.||+
T Consensus 290 ------------------------------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~ 326 (541)
T 1v25_A 290 ------------------------------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGL 326 (541)
T ss_dssp ------------------------------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEEC
T ss_pred ------------------------------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccc
Confidence 112489999999999999999999 5679999999999
Q ss_pred ccccCCccccCCCC-----------CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccc
Q 008134 480 TETCAGSTFSEWDD-----------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548 (576)
Q Consensus 480 TE~~~~~~~~~~~~-----------~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t 548 (576)
||++++++...... ....++|+|+||++++|+| ++++.++ .+.++.|||+|+||+++.|||++|+.|
T Consensus 327 TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~-~~~~~~GEl~v~g~~v~~GY~~~p~~t 404 (541)
T 1v25_A 327 TETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVP-KDGKALGEVQLKGPWITGGYYGNEEAT 404 (541)
T ss_dssp GGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCC-SSSCCCEEEEEESTTSBSSCBTCHHHH
T ss_pred cccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCC-CCCCcceEEEEeCcchhccccCChhhh
Confidence 99988766554321 1237899999999999999 6665533 112468999999999999999999999
Q ss_pred hhhhcccccccceeeeCCeecccCccC
Q 008134 549 SEVYKVNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 549 ~~~f~~~~~g~~~~~TGDlg~~d~d~e 575 (576)
+++| .++| ||+|||+|++|+||.
T Consensus 405 ~~~f--~~~g--~~~TGDlg~~d~dG~ 427 (541)
T 1v25_A 405 RSAL--TPDG--FFRTGDIAVWDEEGY 427 (541)
T ss_dssp HTTB--CTTS--CEEEEEEEEECTTCC
T ss_pred hhhc--cCCC--CeEcCCEEEEcCCce
Confidence 9999 5577 999999999999984
No 7
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=3.1e-63 Score=546.37 Aligned_cols=381 Identities=15% Similarity=0.107 Sum_probs=307.8
Q ss_pred CCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCE
Q 008134 78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR 157 (576)
Q Consensus 78 ~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~ 157 (576)
.....|++++|+++++++||++|+++ .+ +++||+||+++++++|++|+++|+++||+
T Consensus 23 ~~~~~tl~~~~~~~a~~~Pd~~Av~~------------~~-----------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~ 79 (620)
T 4dg8_A 23 LYAHPTVVARFSEMAALHPHREAIRD------------RF-----------GSVDYRQLLDSAEQLSDYLLEHYPQPGVC 79 (620)
T ss_dssp GGGSCCHHHHHHHHHHHCTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHCCSSCCE
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEc------------CC-----------CcCcHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 34457999999999999999999986 33 37999999999999999999999999999
Q ss_pred EEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCC
Q 008134 158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS 237 (576)
Q Consensus 158 V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~ 237 (576)
|+|+++|++++++++|||+|+|+++|||||.++.+++.+++++++++++|++........ ...
T Consensus 80 V~i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~-------~~~---------- 142 (620)
T 4dg8_A 80 LGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN-------GLP---------- 142 (620)
T ss_dssp EEEESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT-------TSC----------
T ss_pred EEEEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc-------CCc----------
Confidence 999999999999999999999999999999999999999999999999997654321100 000
Q ss_pred CCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCC
Q 008134 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS 317 (576)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~ 317 (576)
...+.... ............++++|||+|||||||.||||+++|+++.+.+.. ...+ .+.++
T Consensus 143 --------------~~~~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~ 204 (620)
T 4dg8_A 143 --------------CVPVRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-AFAPQ 204 (620)
T ss_dssp --------------EEEGGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-TTCTT
T ss_pred --------------eeeeccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-CCCCC
Confidence 11111100 001111123456899999999999999999999999999887655 4455 88999
Q ss_pred cEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhc
Q 008134 318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK 397 (576)
Q Consensus 318 d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~ 397 (576)
|++++++|++|+.+++.++.+|+.|+++++.+... .+. ..+.+.++++++|+++++|++++.+.+...
T Consensus 205 d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~-~~~-----~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------ 272 (620)
T 4dg8_A 205 MRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGP-LDP-----GVLRQLIGERGADSAWLTASLFNTLVDLDP------ 272 (620)
T ss_dssp CEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSS-CCH-----HHHHHHHHTTCCCEEEEEHHHHHHHHHHCG------
T ss_pred CEEEEECccCHHHHHHHHHHHHhcCCEEEeCcccc-CCH-----HHHHHHHHHhCCcEEEccHHHHHHHHhcCh------
Confidence 99999999999999999999999999999853221 111 223444999999999999999998865210
Q ss_pred CchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecc
Q 008134 398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQA 476 (576)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~ 476 (576)
...++||.+++|||++++++.+.+...+ +++++|.
T Consensus 273 --------------------------------------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 308 (620)
T 4dg8_A 273 --------------------------------------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNG 308 (620)
T ss_dssp --------------------------------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEE
T ss_pred --------------------------------------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEee
Confidence 0114899999999999998877776654 8999999
Q ss_pred cCcccccCCccccCCCC----CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhh
Q 008134 477 YGLTETCAGSTFSEWDD----PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVY 552 (576)
Q Consensus 477 YG~TE~~~~~~~~~~~~----~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f 552 (576)
||+||++++++...... ....++|+|++|++++|+| +++.. .+++|++|||||+|+++++||||+|+.|+++|
T Consensus 309 YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~--~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f 385 (620)
T 4dg8_A 309 YGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLD-EHGQE--IAEPDRAGEIVAFGAGLAQGYRNDAARTRASF 385 (620)
T ss_dssp ECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEEC-TTSCB--CCSSSCCEEEEEEETTCCSEETTCHHHHHHHE
T ss_pred EchhhhhhheEEEeccccccCCCCCCceecccCcEEEEEC-ccCCC--CCCCCCceEEEEeccccccccCCChhhhhhhh
Confidence 99999998776543322 2347999999999999999 55543 25689999999999999999999999999999
Q ss_pred ccccc-cc--ceeeeCCeecccCccC
Q 008134 553 KVNFH-CV--WMLCICLYVSCDKTLE 575 (576)
Q Consensus 553 ~~~~~-g~--~~~~TGDlg~~d~d~e 575 (576)
+.++. |. +||||||+|++|+||.
T Consensus 386 ~~~p~~~~~~~~yrTGDl~~~~~dG~ 411 (620)
T 4dg8_A 386 VELPYRGRLLRAYRTGDRARYDEQGR 411 (620)
T ss_dssp EEEEETTEEEEEEEEEEEEEECTTSC
T ss_pred ccCCCCCCCceEEeCCCEEEECCCCe
Confidence 76652 32 7999999999999985
No 8
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2.7e-62 Score=532.61 Aligned_cols=393 Identities=17% Similarity=0.179 Sum_probs=324.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 008134 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (576)
Q Consensus 79 ~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V 158 (576)
....++.++|+++++++||++|+++ ++ +++||+||.++++++|++|+++|+++||+|
T Consensus 27 ~~~~tl~~~l~~~a~~~p~~~Al~~------------~~-----------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V 83 (544)
T 3o83_A 27 WIDQPLTRILTVGVQSHPHSLAIIC------------GE-----------RQLSYIELDRLSTNLATRLAEKGLGKGDTA 83 (544)
T ss_dssp CCCCCTTHHHHHHHHHCTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred CCCCCHHHHHHHHHHhCCCceEEEc------------CC-----------CceeHHHHHHHHHHHHHHHHHCCCCCCCEE
Confidence 4457999999999999999999986 33 379999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh-----hHHHHhhhcCCCccEEEEec
Q 008134 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFE 233 (576)
Q Consensus 159 ~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~vv~~~ 233 (576)
+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.... ...............++.++
T Consensus 84 ~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (544)
T 3o83_A 84 LVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLN 163 (544)
T ss_dssp EECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEET
T ss_pred EEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEec
Confidence 9999999999999999999999999999999999999999999999999987653 33344444445556666654
Q ss_pred CCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCC
Q 008134 234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313 (576)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~ 313 (576)
.... ...+.++...............++++++|+|||||||.||||+++|+++.+.+.+....+ +
T Consensus 164 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~ 228 (544)
T 3o83_A 164 HQAT--------------DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-G 228 (544)
T ss_dssp CCTT--------------SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-T
T ss_pred CCcc--------------ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-C
Confidence 4211 123455554433333333456789999999999999999999999999999999999888 9
Q ss_pred CCCCcEEEEecChHHHHHHHH--HHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHH
Q 008134 314 PGRSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (576)
Q Consensus 314 ~~~~d~~l~~~pl~~~~~~~~--~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~ 388 (576)
+.++|++++.+|++|.+++.. ++.+|..|+++++.+ +..+.+. ++++++|+++++|+++..+++
T Consensus 229 ~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~ 297 (544)
T 3o83_A 229 LNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSI-----------IQRHQVNMASLVPSAVIMWLE 297 (544)
T ss_dssp CCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHH
T ss_pred CCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHH-----------HHHHCCCEEEechHHHHHHHh
Confidence 999999999999999998864 788999999999943 3334444 999999999999999999877
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 008134 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (576)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~ 468 (576)
....... ..++||.+++||+++++++.+++.+.
T Consensus 298 ~~~~~~~-----------------------------------------------~~~~lr~i~~gG~~l~~~~~~~~~~~ 330 (544)
T 3o83_A 298 KAAQYKD-----------------------------------------------QIQSLKLLQVGGASFPESLARQVPEV 330 (544)
T ss_dssp HHTTTHH-----------------------------------------------HHTTCCEEEEESSCCCHHHHTHHHHH
T ss_pred chhhccc-----------------------------------------------cCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 5321110 11489999999999999999999999
Q ss_pred hCCceecccCcccccCCccccCCCC-CCCCccCCCC-CCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcc
Q 008134 469 MGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPG 546 (576)
Q Consensus 469 ~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~-~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~ 546 (576)
++++++|.||+||+++.++...... ....++|+|+ ++++++|+| ++++. +++|++|||+|+|++++.|||++|+
T Consensus 331 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~---~~~g~~GEl~v~g~~v~~GY~~~~~ 406 (544)
T 3o83_A 331 LNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVD-EQYRE---VPEGEIGMLATRGPYTFCGYYQSPE 406 (544)
T ss_dssp HCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCB---CCTTCCEEEEEECTTSCSCCTTCHH
T ss_pred hCCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEEC-CCCCC---CCCCCeeEEEEecCCcchhhcCChh
Confidence 9999999999999875544322211 1236899996 899999999 77665 6799999999999999999999999
Q ss_pred cchhhhcccccccceeeeCCeecccCccC
Q 008134 547 KTSEVYKVNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 547 ~t~~~f~~~~~g~~~~~TGDlg~~d~d~e 575 (576)
.|+++| +++| ||+|||+|++|+||.
T Consensus 407 ~t~~~f--~~~g--~~~TGDlg~~~~dG~ 431 (544)
T 3o83_A 407 HNSQVF--DEDN--YYYSGDLVQRTPDGN 431 (544)
T ss_dssp HHHHHB--CTTC--CEEEEEEEEECTTSC
T ss_pred hhhhhC--CCCC--CeEcCCEEEEcCCCC
Confidence 999999 5677 999999999999985
No 9
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=6e-62 Score=532.93 Aligned_cols=401 Identities=14% Similarity=0.153 Sum_probs=330.4
Q ss_pred CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (576)
Q Consensus 81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i 160 (576)
.+.++++|+++|+++||++|+++.+. + +..+++||+||.++++++|++|+++|+++||+|+|
T Consensus 55 ~n~~~~~l~~~a~~~pd~~Al~~~~~---------~---------g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l 116 (580)
T 3etc_A 55 FNFAYDVVDVYARDSPEKLAMIWCDD---------Y---------GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVML 116 (580)
T ss_dssp CCHHHHTHHHHHHHCTTCEEEEEEES---------S---------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred chHHHHHHHHHHhhCCCCEEEEEEcC---------C---------CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 35666999999999999999997531 1 23368999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh--hHHHHhhhcCCCc-cEEEEecCCCC
Q 008134 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL--KKLSAVSSSLKTI-KNVIYFENDGS 237 (576)
Q Consensus 161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~l~~~~~~~~~~-~~vv~~~~~~~ 237 (576)
+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.+.. +.+.+....++.+ ..++.++....
T Consensus 117 ~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (580)
T 3etc_A 117 TLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVL 196 (580)
T ss_dssp ECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCC
T ss_pred EcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccc
Confidence 99999999999999999999999999999999999999999999999987754 5666655555554 55565554321
Q ss_pred CCCCCCCCCCCCceEeehHHHHHcCCCCCCCC---CCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCC
Q 008134 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (576)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 314 (576)
....++.+...........+ ....++|+++|+|||||||.||||+++|.++++.+......+ .+
T Consensus 197 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-~~ 263 (580)
T 3etc_A 197 ------------EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-NV 263 (580)
T ss_dssp ------------TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-CC
T ss_pred ------------cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-CC
Confidence 12356666665443322222 256789999999999999999999999999998887777677 89
Q ss_pred CCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHH
Q 008134 315 GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK 393 (576)
Q Consensus 315 ~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~ 393 (576)
.+++++++.+|++|+.+++. ++.++..|+++++.+...+ + +..+++.|+++++|+++++|++++.|.....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~-~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-- 335 (580)
T 3etc_A 264 EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRF-E-----AKNMLEKASKYGVTTFCAPPTIYRFLIKEDL-- 335 (580)
T ss_dssp CTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSC-C-----HHHHHHHHHHHTCCEEEECHHHHHHHHTSCC--
T ss_pred CCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCC-C-----HHHHHHHHHHHCCeEEEccHHHHHHHHhccc--
Confidence 99999999999999988886 7788999999988532211 1 1223444999999999999999998865210
Q ss_pred HHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCce
Q 008134 394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI 473 (576)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l 473 (576)
.....++||.+++|||++++++.++|.+.+|+++
T Consensus 336 ----------------------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i 369 (580)
T 3etc_A 336 ----------------------------------------------SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKL 369 (580)
T ss_dssp -------------------------------------------------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCC
T ss_pred ----------------------------------------------ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeE
Confidence 0111258999999999999999999999999999
Q ss_pred ecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEcc-----CcccccccCCcccc
Q 008134 474 GQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG-----FNVTAGYFNNPGKT 548 (576)
Q Consensus 474 ~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G-----~~v~~GY~~~~~~t 548 (576)
+|.||+||+++.++.........+++|+|+||++++|+| ++++. +++|+.|||+|+| +++++||+++|+.|
T Consensus 370 ~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~g~~---~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t 445 (580)
T 3etc_A 370 MEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMD-RDGRL---CEVGEEGEIVINTMEGKPVGLFVHYGKDPERT 445 (580)
T ss_dssp EEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEEC-TTSCB---CCTTCCEEEEEECTTCCCTTCCCEETTCHHHH
T ss_pred ecccccccccceeecCCCCCCCCCccccCCCCCEEEEEC-CCCCC---CCCCCceEEEEecCCCCCCeeeccccCCHhHH
Confidence 999999999887776655566778999999999999999 66654 6799999999997 88999999999999
Q ss_pred hhhhcccccccceeeeCCeecccCccC
Q 008134 549 SEVYKVNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 549 ~~~f~~~~~g~~~~~TGDlg~~d~d~e 575 (576)
+++| .+| ||+|||+|++|+||.
T Consensus 446 ~~~f---~~g--wy~TGDlg~~d~dG~ 467 (580)
T 3etc_A 446 EETW---HDG--YYHTGDMAWMDEDGY 467 (580)
T ss_dssp HHHE---ETT--EEEEEEEEEECTTSC
T ss_pred Hhhc---CCC--EEecCcEEEECCCCc
Confidence 9999 467 999999999999985
No 10
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=7.6e-63 Score=529.28 Aligned_cols=401 Identities=16% Similarity=0.142 Sum_probs=307.5
Q ss_pred CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (576)
Q Consensus 82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~ 161 (576)
.++.++|+++++++||++|+++.+.. ++. .+..+++||+||.++++++|++|+++|+ +||+|+|+
T Consensus 24 ~tl~~~l~~~a~~~pd~~Al~~~~~~--------~~~------~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~ 88 (480)
T 3t5a_A 24 RSLPAALRACARLQPHDPAFTFMDYE--------QDW------DGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVIS 88 (480)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEEETT--------TCT------TCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEE
T ss_pred ccHHHHHHHHHHhCCCCceEEEeccc--------CCC------CCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEE
Confidence 79999999999999999999985311 011 1234689999999999999999999996 99999999
Q ss_pred cCCcHHHHHHHHHHHhCCCEEEEccC---CCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCc--cEEEEecCCC
Q 008134 162 AETCVEWFIAFQGCFRQSITVVTIYS---SLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI--KNVIYFENDG 236 (576)
Q Consensus 162 ~~~s~~~~va~lA~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~--~~vv~~~~~~ 236 (576)
++|++++++++|||+++|+++|||++ .++.+++.+++++++++++|++....+.+.+.....+.. ..++.++..
T Consensus 89 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 167 (480)
T 3t5a_A 89 APQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL- 167 (480)
T ss_dssp CCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGS-
T ss_pred cCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEeccc-
Confidence 99999999999999999999999999 788999999999999999999998877766654332221 122222211
Q ss_pred CCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCC
Q 008134 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316 (576)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 316 (576)
.. ............++++++|+|||||||.||||+++|+++++.+.+....+ .+..
T Consensus 168 ----------------------~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~ 223 (480)
T 3t5a_A 168 ----------------------DL-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FADT 223 (480)
T ss_dssp ----------------------CT-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-CTTT
T ss_pred ----------------------cc-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-cccc
Confidence 11 11111223456789999999999999999999999999999998888777 6666
Q ss_pred ------CcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHH
Q 008134 317 ------SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (576)
Q Consensus 317 ------~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~ 389 (576)
+|++++.+|++|++++.. ++.+|+.|+++++.++..+... +..+...++++++| +.++|+++..++..
T Consensus 224 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~~t-~~~~p~~~~~l~~~ 298 (480)
T 3t5a_A 224 DGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQR----PARWMHLMASDFHA-FSAAPNFAFELAAR 298 (480)
T ss_dssp TTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHC----THHHHHHTTSSSEE-EEEECHHHHHHHHH
T ss_pred ccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHC----HHHHHHHHHhhcee-EeeChHHHHHHHHh
Confidence 999999999999999764 7889999999999654322111 12233449999999 88999998887653
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh
Q 008134 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (576)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~ 469 (576)
...... ......++||.+++||+++++++.++|.+.+
T Consensus 299 ~~~~~~-------------------------------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 335 (480)
T 3t5a_A 299 RTTDDD-------------------------------------------MAGRDLGNILTILSGSERVQAATIKRFADRF 335 (480)
T ss_dssp HCCTGG-------------------------------------------GTTCCCTTCCEEEECCTTCCHHHHHHHHHHS
T ss_pred hcCccc-------------------------------------------ccccchhhhheeeecCCcCCHHHHHHHHHHH
Confidence 210000 0011225899999999999999999999887
Q ss_pred C------CceecccCcccccCCccccCCCC-------------------------CCCCccCCCCCCcEEEEeecCCCCC
Q 008134 470 G------APIGQAYGLTETCAGSTFSEWDD-------------------------PSVGRVGPPVPCCYIKLVSWDEGGY 518 (576)
Q Consensus 470 ~------~~l~~~YG~TE~~~~~~~~~~~~-------------------------~~~~~vG~p~~~~~~~ivd~~~~~~ 518 (576)
+ +.++|.||+||+++.++...... ....++|+|++ ++++|+|++++..
T Consensus 336 ~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~ 414 (480)
T 3t5a_A 336 ARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIE 414 (480)
T ss_dssp GGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEE
T ss_pred hhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcC
Confidence 3 47999999999998877654432 12358999999 9999999555554
Q ss_pred cCCCCCCCCceEEEccCcccccccCCcccchhhhccc-------ccccceeeeCCeecccCccC
Q 008134 519 KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVN-------FHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 519 ~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~-------~~g~~~~~TGDlg~~d~d~e 575 (576)
+++|++|||+|+|+++++|||++|++|+++|..+ .++++||||||+|++| ||.
T Consensus 415 ---~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~ 474 (480)
T 3t5a_A 415 ---CPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGK 474 (480)
T ss_dssp ---CCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTE
T ss_pred ---CCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCE
Confidence 6799999999999999999999999999999411 1245699999999997 874
No 11
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=8.9e-62 Score=525.20 Aligned_cols=392 Identities=20% Similarity=0.232 Sum_probs=319.8
Q ss_pred cccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCC
Q 008134 75 EVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNV 154 (576)
Q Consensus 75 ~~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~ 154 (576)
..+.+...|+.++|+++++++|+++|+++.+ ..+++||+||.++++++|++|+++|+++
T Consensus 9 ~~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~---------------------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~ 67 (517)
T 3r44_A 9 VDDDDKMKNIGWMLRQRATVSPRLQAYVEPS---------------------TDVRMTYAQMNALANRCADVLTALGIAK 67 (517)
T ss_dssp ---CGGGGCHHHHHHHHHHHSTTSEEEEEGG---------------------GTEEEEHHHHHHHHHHHHHHHHHTTCCT
T ss_pred CCCcccccCHHHHHHHHHHhCCCCeEEEeCC---------------------cCceeeHHHHHHHHHHHHHHHHHcCCCC
Confidence 3344666899999999999999999998631 1247999999999999999999999999
Q ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecC
Q 008134 155 DTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEN 234 (576)
Q Consensus 155 gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~ 234 (576)
||+|+|+++|++++++++|||+++|+++|||+|.++.+++.+++++++++++|++....+.+............++.+.
T Consensus 68 gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~- 146 (517)
T 3r44_A 68 GDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWI- 146 (517)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEE-
T ss_pred cCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEcc-
Confidence 9999999999999999999999999999999999999999999999999999999988877766654333221111100
Q ss_pred CCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCC
Q 008134 235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (576)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 314 (576)
...++.+...... ...+.....+++++||+|||||||.||||+++|+++++.+......+ ++
T Consensus 147 ----------------~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~ 208 (517)
T 3r44_A 147 ----------------GADSLAERLRSAA-ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-DV 208 (517)
T ss_dssp ----------------EHHHHHHHHHHCC-CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-CC
T ss_pred ----------------CcccHHHHhhccC-cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-CC
Confidence 0012333333222 22233556789999999999999999999999999999999998888 99
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHH
Q 008134 315 GRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (576)
Q Consensus 315 ~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~ 391 (576)
.++|++++.+|++|+.++...+.+++.|+++++. ++..+.+. +.++++|++.++|+++..+.....
T Consensus 209 ~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~ 277 (517)
T 3r44_A 209 RYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSL-----------IVEERVCIGGAVPAILNFMRQVPE 277 (517)
T ss_dssp CTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHSHH
T ss_pred CCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHH-----------HHHhCCeEEEeHHHHHHHHHhCcc
Confidence 9999999999999999998866666699999984 34444444 999999999999999998876422
Q ss_pred HHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCC
Q 008134 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA 471 (576)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~ 471 (576)
.. +...++||.+++||+++++++.++|... ++
T Consensus 278 ~~-----------------------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~ 309 (517)
T 3r44_A 278 FA-----------------------------------------------ELDAPDFRYFITGGAPMPEALIKIYAAK-NI 309 (517)
T ss_dssp HH-----------------------------------------------HCCCTTCCEEEECSSCCCHHHHHHHHHT-TC
T ss_pred cc-----------------------------------------------cCCCCcccEEEECCCCCCHHHHHHHHhc-CC
Confidence 11 1122589999999999999999999887 99
Q ss_pred ceecccCcccccCCccccCCC--CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccch
Q 008134 472 PIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549 (576)
Q Consensus 472 ~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~ 549 (576)
+++|.||+||+++.++..... ....+++|+|+++++++|+| +++.. ++.| .|||+|+|++++.|||++|+.|+
T Consensus 310 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~---~~~g-~GEl~v~g~~v~~GY~~~p~~t~ 384 (517)
T 3r44_A 310 EVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVI---REHG-EGEVVIKSDILLKEYWNRPEATR 384 (517)
T ss_dssp EEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCE---ESSE-EEEEEEEETTSCSEETTCHHHHH
T ss_pred cEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCC---CCCC-CeEEEEeCcchhhhhCCChhhhH
Confidence 999999999998877654433 23458999999999999999 66654 3466 89999999999999999999999
Q ss_pred hhhcccccccceeeeCCeecccCccC
Q 008134 550 EVYKVNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 550 ~~f~~~~~g~~~~~TGDlg~~d~d~e 575 (576)
++| .+| ||||||+|++|+||.
T Consensus 385 ~~f---~~g--~~~TGDl~~~~~dG~ 405 (517)
T 3r44_A 385 DAF---DNG--WFRTGDIGEIDDEGY 405 (517)
T ss_dssp HTE---ETT--EEEEEEEEEECTTSC
T ss_pred hhh---cCC--CEecceeEEEcCCee
Confidence 999 567 999999999999985
No 12
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=9.1e-62 Score=523.37 Aligned_cols=384 Identities=23% Similarity=0.311 Sum_probs=314.4
Q ss_pred HHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCc
Q 008134 86 ALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC 165 (576)
Q Consensus 86 ~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s 165 (576)
++|+++++++|+++|+..... +|+ ++||+||.++++++|++|+++|+++||+|+++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~---------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~ 63 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETA---------AGD-----------KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS 63 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEET---------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSC
T ss_pred hHHHHHHHhCCCCceEEEecC---------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence 478999999999999986320 333 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCC
Q 008134 166 VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245 (576)
Q Consensus 166 ~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~ 245 (576)
+++++++|||+++|+++||++|.++.+++.+++++++++++|++.+..+.+......... .++.++....
T Consensus 64 ~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------- 133 (503)
T 4fuq_A 64 VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGR-------- 133 (503)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSC--------
T ss_pred HHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCcc--------
Confidence 999999999999999999999999999999999999999999998876655554433221 3333332211
Q ss_pred CCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecC
Q 008134 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLP 325 (576)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~p 325 (576)
..+.+.... ...........++++++|+|||||||.||||+++|+++++.+......+ +++++|++++.+|
T Consensus 134 -------~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p 204 (503)
T 4fuq_A 134 -------GSLTDAAAG-ASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-RFTPDDVLIHALP 204 (503)
T ss_dssp -------SHHHHHHHT-SCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSC
T ss_pred -------cccchhhhc-CCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEeCC
Confidence 112222221 1222233456789999999999999999999999999999999998888 9999999999999
Q ss_pred hHHHHHHHH-HHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchh
Q 008134 326 LAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLT 401 (576)
Q Consensus 326 l~~~~~~~~-~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~ 401 (576)
++|.+++.. .+.+++.|+++++. ++..+.+. ++ ++|+++++|+++..++.....
T Consensus 205 ~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~--~~t~~~~~P~~~~~l~~~~~~--------- 262 (503)
T 4fuq_A 205 IYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDL-----------MA--RATVLMGVPTFYTRLLQSPRL--------- 262 (503)
T ss_dssp SSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHH-----------HT--TCCEEEECHHHHHHHHTCTTC---------
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHH-----------Hh--hcCEEEEHHHHHHHHHhCCCc---------
Confidence 999998765 67889999999984 44444444 65 899999999999988653110
Q ss_pred HHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCccc
Q 008134 402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTE 481 (576)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE 481 (576)
.+...++||.+++||+++++++.+.|.+.+|++++|.||+||
T Consensus 263 --------------------------------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE 304 (503)
T 4fuq_A 263 --------------------------------------TKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTE 304 (503)
T ss_dssp --------------------------------------STTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETT
T ss_pred --------------------------------------cccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccc
Confidence 001125899999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccce
Q 008134 482 TCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWM 561 (576)
Q Consensus 482 ~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~ 561 (576)
+++.++.........+++|+|++|++++|+|+++++. +++|+.|||+|+|+++++|||++|+.|+++| ..+| |
T Consensus 305 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f--~~~g--~ 377 (503)
T 4fuq_A 305 TNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKE---LPRGDIGMIEVKGPNVFKGYWRMPEKTKSEF--RDDG--F 377 (503)
T ss_dssp TEECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCB---CCTTCCEEEEEESTTSCCCBTTCHHHHHHTB--CTTS--C
T ss_pred cCcccccCCCCCCcCCccccCCCCeEEEEEECCCCCC---CcCCCceEEEEECCchhhhhcCChhhhHhhh--CCCC--C
Confidence 9877654443445568999999999999999777765 5699999999999999999999999999999 5577 9
Q ss_pred eeeCCeecccCccC
Q 008134 562 LCICLYVSCDKTLE 575 (576)
Q Consensus 562 ~~TGDlg~~d~d~e 575 (576)
|+|||+|++|+||.
T Consensus 378 ~~TGDl~~~~~dG~ 391 (503)
T 4fuq_A 378 FITGDLGKIDERGY 391 (503)
T ss_dssp EEEEEEEEECTTCE
T ss_pred eEcceeEEEcCCCc
Confidence 99999999999984
No 13
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1e-61 Score=528.33 Aligned_cols=398 Identities=24% Similarity=0.310 Sum_probs=325.7
Q ss_pred CCCCCCHHH-HHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCC
Q 008134 78 WKGASTMAA-LFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT 156 (576)
Q Consensus 78 ~~~~~tl~~-~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd 156 (576)
.+...++.+ +|.++++++ |++|+++.. ++ +++||+||.++++++|++|+++|+++||
T Consensus 21 ~p~~~~l~~~~l~~~~~~~-~~~A~~~~~----------~~-----------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd 78 (548)
T 2d1s_A 21 EEGSAGTQLRKYMERYAKL-GAIAFTNAV----------TG-----------VDYSYAEYLEKSCCLGKALQNYGLVVDG 78 (548)
T ss_dssp CSSCHHHHHHHHHHHHHHH-TCEEEEETT----------TC-----------CEEEHHHHHHHHHHHHHHHHHHTCCTTC
T ss_pred CCCcCcHHHHHHHhhhccc-CCceEEEcC----------CC-----------CEeeHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 344468999 899999999 999998521 12 3799999999999999999999999999
Q ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCC
Q 008134 157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG 236 (576)
Q Consensus 157 ~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~ 236 (576)
+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++.+..+.+......++....++.++...
T Consensus 79 ~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (548)
T 2d1s_A 79 RIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKV 158 (548)
T ss_dssp EEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSS
T ss_pred EEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcc
Confidence 99999999999999999999999999999999999999999999999999999988777766655555456666655421
Q ss_pred CCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCC-----C-CCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhh
Q 008134 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPS-----Q-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310 (576)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~ 310 (576)
.. ....+++++.........+..... + +++++|+|||||||.||||+++|+++++.+......
T Consensus 159 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~ 227 (548)
T 2d1s_A 159 DY-----------RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDP 227 (548)
T ss_dssp CB-----------TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCT
T ss_pred cc-----------cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhch
Confidence 10 012346666654322101111122 4 899999999999999999999999999988887766
Q ss_pred ---CCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHH
Q 008134 311 ---IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIF 383 (576)
Q Consensus 311 ---~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l 383 (576)
+ +++++|++++.+|++|++++.. ++.++ .|+++++.+ +..+.+. |+++++|+++++|+++
T Consensus 228 ~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~ 294 (548)
T 2d1s_A 228 IYGN-QVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKT-----------LQDYKCTSVILVPTLF 294 (548)
T ss_dssp TTSC-CCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHH-----------HHHTTEEEEEECHHHH
T ss_pred hhcc-CCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHH-----------HHHcCCcEEEecHHHH
Confidence 5 7889999999999999999987 55667 999999843 4444444 9999999999999999
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHH
Q 008134 384 DRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQR 463 (576)
Q Consensus 384 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~ 463 (576)
..+.+.... .+...++||.+++||+++++++.+
T Consensus 295 ~~l~~~~~~-----------------------------------------------~~~~l~~lr~i~~gG~~l~~~~~~ 327 (548)
T 2d1s_A 295 AILNKSELL-----------------------------------------------NKYDLSNLVEIASGGAPLSKEVGE 327 (548)
T ss_dssp HHHHHCSCG-----------------------------------------------GGSCCTTCCEEEECSSCCCHHHHH
T ss_pred HHHHhCccc-----------------------------------------------ccccccceeEEEEcCccCCHHHHH
Confidence 988652110 001125899999999999999999
Q ss_pred HHHhhh-CCceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCccccccc
Q 008134 464 FINICM-GAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF 542 (576)
Q Consensus 464 ~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~ 542 (576)
+|++.+ +++++|.||+||+++.++.........+++|+|+|+++++|+|+++++. +++|+.|||+|+|+++++|||
T Consensus 328 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~---~~~g~~GEl~v~g~~v~~GY~ 404 (548)
T 2d1s_A 328 AVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKS---LGPNRRGEVCVKGPMLMKGYV 404 (548)
T ss_dssp HHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCB---CCTTCCEEEEEESTTSCSEET
T ss_pred HHHHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCcc---CCCCCCeEEEECCHHHhhhhc
Confidence 999988 6889999999999887766444445568999999999999999767665 568999999999999999999
Q ss_pred CCcccchhhhcccccccceeeeCCeecccCccC
Q 008134 543 NNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 543 ~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e 575 (576)
++|+.|+++| +++| ||+|||+|++|+||.
T Consensus 405 ~~~~~t~~~f--~~~g--~~~TGDl~~~~~dG~ 433 (548)
T 2d1s_A 405 NNPEATKELI--DEEG--WLHTGDIGYYDEEKH 433 (548)
T ss_dssp TCHHHHHHHB--CTTS--CEEEEEEEEECTTCC
T ss_pred CChHHhhhcc--cCCc--EEEccCEEEEcCCCe
Confidence 9999999999 5677 999999999999984
No 14
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.8e-61 Score=522.26 Aligned_cols=381 Identities=21% Similarity=0.265 Sum_probs=318.6
Q ss_pred CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (576)
Q Consensus 82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~ 161 (576)
.|++++|+++++++||++|+++ +++ ++||+||.++++++|++|+++|+++||+|+++
T Consensus 6 ~tl~~~l~~~a~~~pd~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~ 62 (509)
T 3ivr_A 6 FTLADVYRRNAALFPDRTAFMV------------DGV-----------RLTHRDYLARAERLASGLLRDGVHTGDRVAIL 62 (509)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CCHHHHHHHHHHHCCCceEEEE------------CCc-----------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 7999999999999999999986 443 79999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCC
Q 008134 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (576)
Q Consensus 162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~ 241 (576)
++|++++++++|||+++|++++||+|.++.+++.+++++++++++|++.+..+.+......++.+..++.++....
T Consensus 63 ~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 138 (509)
T 3ivr_A 63 SQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG---- 138 (509)
T ss_dssp CCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS----
T ss_pred cCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc----
Confidence 9999999999999999999999999999999999999999999999999888776666666677777777654221
Q ss_pred CCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 008134 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321 (576)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l 321 (576)
.+.++...............++++++|+|||||||.||||+++|+++++.+.+....+ +++++|+++
T Consensus 139 ------------~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l 205 (509)
T 3ivr_A 139 ------------PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVNL 205 (509)
T ss_dssp ------------SCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEE
T ss_pred ------------ChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEE
Confidence 1112222112222333566789999999999999999999999999999999998888 999999999
Q ss_pred EecChHHHHHHHHHHHHHHhCceEEE---CCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcC
Q 008134 322 AYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (576)
Q Consensus 322 ~~~pl~~~~~~~~~~~~l~~G~~~~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~ 398 (576)
+.+|++|++++...+.+++.|++.++ .++..+.+. ++++++|+++++|+++..+++....
T Consensus 206 ~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~~~~------ 268 (509)
T 3ivr_A 206 GMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARD-----------IEAHKVTVMAEFAPMLGNILDQAAP------ 268 (509)
T ss_dssp ECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEEETTHHHHHHHHCCG------
T ss_pred EeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHHHH-----------HHHHCCcEEEecHHHHHHHHhcccc------
Confidence 99999999999887776666666665 344444444 9999999999999999998764200
Q ss_pred chhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceeccc
Q 008134 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAY 477 (576)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~Y 477 (576)
...++||.++.+|++ ++.+.+.+.+ +++++|.|
T Consensus 269 -------------------------------------------~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~Y 302 (509)
T 3ivr_A 269 -------------------------------------------AQLASLRAVTGLDTP---ETIERFEATCPNATFWATF 302 (509)
T ss_dssp -------------------------------------------GGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEE
T ss_pred -------------------------------------------cchhhhheecccCCh---HHHHHHHHhcCCCeEEccc
Confidence 011489999999998 7788888877 99999999
Q ss_pred CcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhccccc
Q 008134 478 GLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFH 557 (576)
Q Consensus 478 G~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~ 557 (576)
|+||++++++...... ...++|+|++|++++|+| ++++. +++|+.|||+|+|++++.|||++|+.|+++| .+
T Consensus 303 G~TE~~~~~~~~~~~~-~~~~~G~p~~~~~~~i~d-~~~~~---~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f---~~ 374 (509)
T 3ivr_A 303 GQSETSGLSTFAPYRD-RPKSAGRPLFWRTVAVVD-AEDRP---LPPGEVGEIVLRGPTVFKGYWNNAAATQHAF---RN 374 (509)
T ss_dssp EEGGGTEEEEEEEGGG-STTSCCEECTTCEEEEEC-TTSCB---CCTTCCEEEEEESTTSCCEETTCHHHHHHHT---GG
T ss_pred CccccccccccCcccc-CCCcccccCCCcEEEEEC-CCCCC---CCCCCceEEEEecCCccccccCCHHHhHHHh---hc
Confidence 9999998776554332 234699999999999999 55654 6799999999999999999999999999999 36
Q ss_pred ccceeeeCCeecccCccC
Q 008134 558 CVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 558 g~~~~~TGDlg~~d~d~e 575 (576)
| ||+|||+|++|+||.
T Consensus 375 g--~~~TGDl~~~~~dG~ 390 (509)
T 3ivr_A 375 G--WHHTGDMGRFDADGY 390 (509)
T ss_dssp G--SEEEEEEEEECTTSC
T ss_pred C--CcccccEEEECCCce
Confidence 7 999999999999985
No 15
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=5.2e-62 Score=533.28 Aligned_cols=381 Identities=20% Similarity=0.194 Sum_probs=309.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 008134 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (576)
Q Consensus 79 ~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V 158 (576)
+...+++++|+++++++||++|+++ ++ +++||+||.++++++|++|+++|+++||+|
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~------------~~-----------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 128 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLH------------EA-----------DELTYGALNERANRLAHRLVGLGVAPGTLV 128 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred CccCCHHHHHHHHHHHCCCCeEEEC------------CC-----------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 4457999999999999999999986 33 379999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCC
Q 008134 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (576)
Q Consensus 159 ~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~ 238 (576)
+|+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++......+ .....++..+..
T Consensus 129 ~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~--- 198 (570)
T 4gr5_A 129 GVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL-------TGTTTLYVEDEA--- 198 (570)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------CSSEEEECCC-----
T ss_pred EEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc-------cCCcceeeeccc---
Confidence 9999999999999999999999999999999999999999999999999997654321 122222211110
Q ss_pred CCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCc
Q 008134 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD 318 (576)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d 318 (576)
..............++++++|+|||||||.||||+++|+++.+.+.. ...+ .++++|
T Consensus 199 ---------------------~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d 255 (570)
T 4gr5_A 199 ---------------------ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-GFGPDE 255 (570)
T ss_dssp --------------------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-CCSTTC
T ss_pred ---------------------cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-CCCCCC
Confidence 00011112234567899999999999999999999999999876654 3344 788999
Q ss_pred EEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcC
Q 008134 319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (576)
Q Consensus 319 ~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~ 398 (576)
++++.+|++|+.+.+.++.+++.|+++++.+.... + +..+.+.|+++++|++.++|+++..+.+....
T Consensus 256 ~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~-~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------ 323 (570)
T 4gr5_A 256 VFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNP-D-----PLEIGELVARHGVTMLQLSASLFNFLVDEVPE------ 323 (570)
T ss_dssp EEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSC-C-----HHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG------
T ss_pred EEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccC-C-----HHHHHHHHHHcCCcEEEecHHHHHHHHhhchh------
Confidence 99999999998888888999999999998543211 1 12233449999999999999999988753210
Q ss_pred chhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceeccc
Q 008134 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAY 477 (576)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~Y 477 (576)
..++||.+++||+++++++.+.+.+.+ +++++|.|
T Consensus 324 --------------------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 359 (570)
T 4gr5_A 324 --------------------------------------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGY 359 (570)
T ss_dssp --------------------------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred --------------------------------------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEee
Confidence 014899999999999999988887776 89999999
Q ss_pred CcccccCCccccCCC----CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhc
Q 008134 478 GLTETCAGSTFSEWD----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553 (576)
Q Consensus 478 G~TE~~~~~~~~~~~----~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~ 553 (576)
|+||+++.++..... .....++|+|++|++++|+| ++++. +++|++|||+|+|+++++|||++|+.|+++|+
T Consensus 360 G~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~---~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 435 (570)
T 4gr5_A 360 GPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKP---AANGALGELYVAGAGLAHGYVSRPALTAERFV 435 (570)
T ss_dssp CCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCB---CCTTCEEEEEEEETTCCCEETTCHHHHHHHEE
T ss_pred chhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCC---CCCCCcEEEEEeecccchhcCCCchhhhcccc
Confidence 999998877654322 22346799999999999999 66655 66999999999999999999999999999996
Q ss_pred ccc----cccceeeeCCeecccCccC
Q 008134 554 VNF----HCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 554 ~~~----~g~~~~~TGDlg~~d~d~e 575 (576)
.++ +|.+||||||+|++|+||.
T Consensus 436 ~~~~~~~~~~~w~~TGDlg~~d~dG~ 461 (570)
T 4gr5_A 436 ADPFAGPGGERMYRTGDLARRRADGV 461 (570)
T ss_dssp ECTTCCSSCCEEEEEEEEEEECTTSC
T ss_pred cCCCCCCCCCEEEeCCCeEEECCCCe
Confidence 553 4557999999999999985
No 16
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.1e-61 Score=527.04 Aligned_cols=386 Identities=20% Similarity=0.217 Sum_probs=315.8
Q ss_pred CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (576)
Q Consensus 82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~ 161 (576)
.+++++|+++++++||++|+++ ++ +++||+||+++++++|++|+++|+++||+|+|+
T Consensus 25 ~tl~~~l~~~a~~~p~~~A~~~------------~~-----------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~ 81 (539)
T 1mdb_A 25 ETFGDLLRDRAAKYGDRIAITC------------GN-----------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQ 81 (539)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEC
T ss_pred CCHHHHHHHHHHHCCCCEEEEe------------CC-----------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 6999999999999999999986 33 379999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh-----hHHHHhhhcCCCccEEEEecCCC
Q 008134 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFENDG 236 (576)
Q Consensus 162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~vv~~~~~~ 236 (576)
++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.... ..+..+...++.++.++..+...
T Consensus 82 ~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (539)
T 1mdb_A 82 LPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE 161 (539)
T ss_dssp CCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT
T ss_pred cCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc
Confidence 9999999999999999999999999999999999999999999999987532 23333334455556565544311
Q ss_pred CCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCC
Q 008134 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316 (576)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 316 (576)
. +.++.... ..+.......++++++|+|||||||.||||+++|+++++.+.+....+ ++++
T Consensus 162 ~-----------------~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~~ 222 (539)
T 1mdb_A 162 E-----------------FLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDH 222 (539)
T ss_dssp T-----------------SEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCT
T ss_pred c-----------------hhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-CCCC
Confidence 0 11111111 111122445789999999999999999999999999999998888888 8999
Q ss_pred CcEEEEecChHHHHHHH--HHHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHHHH
Q 008134 317 SDVYLAYLPLAHVLELA--AESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (576)
Q Consensus 317 ~d~~l~~~pl~~~~~~~--~~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~ 391 (576)
+|++++.+|++|++++. .++.+|+.|+++++.+ +..+.+. ++++++|+++++|+++..+++...
T Consensus 223 ~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~ 291 (539)
T 1mdb_A 223 STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL-----------IEREKVTITALVPPLAMVWMDAAS 291 (539)
T ss_dssp TCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHH-----------HHHHTCSEEEECHHHHHHHHHHHH
T ss_pred CCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHH-----------HHHcCCeEEEccHHHHHHHHhCcc
Confidence 99999999999999987 4888999999999943 3444444 999999999999999999876432
Q ss_pred HHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCC
Q 008134 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA 471 (576)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~ 471 (576)
.. ....++||.+++||+++++++.++|++.+|+
T Consensus 292 ~~-----------------------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~ 324 (539)
T 1mdb_A 292 SR-----------------------------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGC 324 (539)
T ss_dssp HC-----------------------------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCS
T ss_pred cc-----------------------------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCC
Confidence 10 0112589999999999999999999998999
Q ss_pred ceecccCcccccCCccccCCC-CCCCCccCCCCCCc-EEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccch
Q 008134 472 PIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCC-YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549 (576)
Q Consensus 472 ~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~-~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~ 549 (576)
+++|.||+||+++.++..... ....+++|+|+++. +++|+| ++++. +++|+.|||+|+|+++++|||++|+.|+
T Consensus 325 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~ 400 (539)
T 1mdb_A 325 TLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWD-DHDRD---VKPGETGHLLTRGPYTIRGYYKAEEHNA 400 (539)
T ss_dssp EEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEEC-TTSCB---CCTTCCEEEEEECTTSCSSCTTCHHHHH
T ss_pred cEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEEC-CCCCC---CcCCCcceEEeeCcccchhhcCChhhhh
Confidence 999999999975433321111 11236899999765 899999 66654 6799999999999999999999999999
Q ss_pred hhhcccccccceeeeCCeecccCccC
Q 008134 550 EVYKVNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 550 ~~f~~~~~g~~~~~TGDlg~~d~d~e 575 (576)
++| ..+| ||+|||+|++|+||.
T Consensus 401 ~~f--~~~g--~~~TGDlg~~~~dG~ 422 (539)
T 1mdb_A 401 ASF--TEDG--FYRTGDIVRLTRDGY 422 (539)
T ss_dssp HHB--CTTS--CEEEEEEEEECTTSC
T ss_pred hhc--cCCC--CeecCceEEECCCCc
Confidence 999 4577 999999999999985
No 17
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=7.6e-61 Score=523.40 Aligned_cols=398 Identities=15% Similarity=0.185 Sum_probs=325.7
Q ss_pred CCCHHHHHHHHHHh-----CCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHC-CCCC
Q 008134 81 ASTMAALFEQSCKS-----HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNV 154 (576)
Q Consensus 81 ~~tl~~~~~~~a~~-----~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~ 154 (576)
.+++.++|++++++ +||++|+++.+ +. +..+++||+||.++++++|++|+++ |+++
T Consensus 37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~~-----------~~-------g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~ 98 (570)
T 3c5e_A 37 FNFASDVLDHWADMEKAGKRPPSPALWWVN-----------GK-------GKELMWNFRELSENSQQAANVLSGACGLQR 98 (570)
T ss_dssp CCHHHHTHHHHHHHHHTTSSCCCEEEEEEC-----------SS-------SCEEEEEHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred ccHHHHHHHHHHhhccccCCCCceEEEEEc-----------CC-------CceeEEeHHHHHHHHHHHHHHHHHccCCCC
Confidence 35778999999999 99999998742 11 1235899999999999999999999 9999
Q ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecC
Q 008134 155 DTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEN 234 (576)
Q Consensus 155 gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~ 234 (576)
||+|+|+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.+..+.+......++.++.++.++.
T Consensus 99 gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (570)
T 3c5e_A 99 GDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSE 178 (570)
T ss_dssp TCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESS
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999888777776666677777776654
Q ss_pred CCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHH--HHHHHHhhCC
Q 008134 235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA--TAAAIKTLIP 312 (576)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~--~~~~~~~~~~ 312 (576)
... .....++++....... .......++++++|+|||||||.||||+++|+ ++. ..... ..+
T Consensus 179 ~~~------------~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~- 242 (570)
T 3c5e_A 179 KSC------------DGWLNFKKLLNEASTT-HHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT- 242 (570)
T ss_dssp SCC------------TTSEEHHHHHHHSCSC-CCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-
T ss_pred cCc------------cccccHHHHhhccccc-ccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-
Confidence 211 0124566666543221 22245678999999999999999999999999 554 33333 555
Q ss_pred CCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHH
Q 008134 313 NPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (576)
Q Consensus 313 ~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~ 391 (576)
+++++|++++.+|++|+++++. ++.++..|+++++.+... .+ +..+++.|+++++|+++++|+++..+.+...
T Consensus 243 ~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~-~~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 316 (570)
T 3c5e_A 243 GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPK-FD-----PLVILKTLSSYPIKSMMGAPIVYRMLLQQDL 316 (570)
T ss_dssp SCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSS-CC-----HHHHHHHHHHSCCCEEEECHHHHHHHHTSCT
T ss_pred CCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCC-CC-----HHHHHHHHHHhCCeEEeccHHHHHHHHhccc
Confidence 8899999999999999999874 788999999999843211 11 1223344999999999999999998865200
Q ss_pred HHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCC
Q 008134 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA 471 (576)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~ 471 (576)
.....++||.+++||+++++++.++|.+.+|+
T Consensus 317 ------------------------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~ 348 (570)
T 3c5e_A 317 ------------------------------------------------SSYKFPHLQNCVTVGESLLPETLENWRAQTGL 348 (570)
T ss_dssp ------------------------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSC
T ss_pred ------------------------------------------------cccccccceEEEEcCCcCCHHHHHHHHHHhCC
Confidence 00012589999999999999999999998899
Q ss_pred ceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEc-----cCcccccccCCcc
Q 008134 472 PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG-----GFNVTAGYFNNPG 546 (576)
Q Consensus 472 ~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~-----G~~v~~GY~~~~~ 546 (576)
+++|.||+||+++.++.........+++|+|++|++++|+| ++++. +++|+.|||+|+ |++++.|||++|+
T Consensus 349 ~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~g~~---~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~ 424 (570)
T 3c5e_A 349 DIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIID-DKGNV---LPPGTEGDIGIRVKPIRPIGIFSGYVDNPD 424 (570)
T ss_dssp CCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEEC-TTSCB---CCTTCCEEEEEECSSBCCTTCCCEETTCHH
T ss_pred chhhccchhhcccceecCcccccCCCcccccCCCceEEEEC-CCCCC---CCCCCCCeeEEeccCCCCchhhccccCChh
Confidence 99999999999876655544445568999999999999999 66654 679999999999 9999999999999
Q ss_pred cchhhhcccccccceeeeCCeecccCccC
Q 008134 547 KTSEVYKVNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 547 ~t~~~f~~~~~g~~~~~TGDlg~~d~d~e 575 (576)
.|+++| .+| ||+|||+|++|+||.
T Consensus 425 ~t~~~f---~~~--~~~TGDlg~~d~dG~ 448 (570)
T 3c5e_A 425 KTAANI---RGD--FWLLGDRGIKDEDGY 448 (570)
T ss_dssp HHHHTE---ETT--EEEEEEEEEECTTSC
T ss_pred Hhhhhh---cCC--ccccceeEEEcCCce
Confidence 999999 356 999999999999985
No 18
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=8.7e-61 Score=516.12 Aligned_cols=381 Identities=19% Similarity=0.225 Sum_probs=305.4
Q ss_pred CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (576)
Q Consensus 81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i 160 (576)
+.|++++|+++++++||++|+.+.. ++ +++||+||.++++++|++|+++|+++||+|++
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~~----------~~-----------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i 59 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVPA----------RG-----------LRLTHAELRARVEAVAARLHADGLRPQQRVAV 59 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEETT----------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCcHHHHHHHHHHhCCCceEEEEcC----------CC-----------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3689999999999999999998620 12 47999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEE--CchhhhHHHHhhhcCCCccEEEEecCCCCC
Q 008134 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLIC--DSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (576)
Q Consensus 161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~ 238 (576)
+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+ +....+.+.. ..+..+ +
T Consensus 60 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~~-~--------- 126 (504)
T 1t5h_X 60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ---SGSGAR-I--------- 126 (504)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHH---HCCCCE-E---------
T ss_pred EcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhh---ccccce-e---------
Confidence 999999999999999999999999999999999999999999999999 6665444311 111111 2
Q ss_pred CCCCCCCCCCCceEeehHHHHHcCC----CCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCC
Q 008134 239 KDSGVSGGISNWTVSSFSEVEKLGK----RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (576)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 314 (576)
+.++++..... ..........++++++|+|||||||.||||+++|+++.+.+......+ ++
T Consensus 127 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~ 191 (504)
T 1t5h_X 127 --------------IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-GL 191 (504)
T ss_dssp --------------EEGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-CC
T ss_pred --------------EEecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-CC
Confidence 22222221110 111112345689999999999999999999999999999988888777 77
Q ss_pred --CCCcEEEEecChHHHHHHH-HHHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHH
Q 008134 315 --GRSDVYLAYLPLAHVLELA-AESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (576)
Q Consensus 315 --~~~d~~l~~~pl~~~~~~~-~~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~ 388 (576)
+++|++++.+|++|++++. .++.++..|+++++.+ +..+.+. |+++++|+++++|++++.+..
T Consensus 192 ~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~ 260 (504)
T 1t5h_X 192 RHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQL-----------VQQEQVTSLFATPTHLDALAA 260 (504)
T ss_dssp CSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEECCHHHHHHHHH
T ss_pred CCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHH-----------HHHhCCeEEEeChHHHHHHHh
Confidence 8899999999999999984 4788999999999943 3344444 999999999999999999876
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 008134 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (576)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~ 468 (576)
....... ....++||.+++||+++++++.++|++.
T Consensus 261 ~~~~~~~---------------------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~ 295 (504)
T 1t5h_X 261 AAAHAGS---------------------------------------------SLKLDSLRHVTFAGATMPDAVLETVHQH 295 (504)
T ss_dssp HHCCTTC---------------------------------------------CCCCTTCCEEEECCTTCCHHHHHHHHHH
T ss_pred hhccccc---------------------------------------------cccCccccEEEEcCCcCCHHHHHHHHHh
Confidence 4210000 0012489999999999999999999999
Q ss_pred hCCceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEc-cCcccccccCCccc
Q 008134 469 MGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG-GFNVTAGYFNNPGK 547 (576)
Q Consensus 469 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~-G~~v~~GY~~~~~~ 547 (576)
++++++|.||+||++. +.... ....+++|+|.++++++|+| +++.....+++|+.|||+|+ |++++.||+++|+.
T Consensus 296 ~~~~~~~~YG~TE~~~-~~~~~--~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~ 371 (504)
T 1t5h_X 296 LPGEKVNIYGTTEAMN-SLYMR--QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQA 371 (504)
T ss_dssp CCSEEEEEEEETTTEE-EEEEE--SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHH
T ss_pred cCcceeeeeccccccc-ccccc--CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchh
Confidence 9999999999999832 22221 34457999999999999999 44432234789999999999 99999999999999
Q ss_pred chhhhcccccccceeeeCCeecccCccC
Q 008134 548 TSEVYKVNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 548 t~~~f~~~~~g~~~~~TGDlg~~d~d~e 575 (576)
|+++| .+| ||+|||+|++|+||.
T Consensus 372 t~~~f---~~g--~~~TGDlg~~~~dG~ 394 (504)
T 1t5h_X 372 TAEKL---QDG--WYRTSDVAVWTPEGT 394 (504)
T ss_dssp HHHHE---ETT--EEEEEEEEEECTTSC
T ss_pred hhhhh---cCC--ccccCcEEEECCCce
Confidence 99999 577 999999999999985
No 19
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=9.9e-61 Score=527.85 Aligned_cols=396 Identities=16% Similarity=0.196 Sum_probs=321.6
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCC
Q 008134 77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT 156 (576)
Q Consensus 77 ~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd 156 (576)
.++...+++++|+++++ ||++|+++ ++ +++||+||+++++++|++|+++|+++||
T Consensus 22 ~~~~~~~l~~~~~~~a~--pd~~Av~~------------~~-----------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd 76 (617)
T 3rg2_A 22 GYWQDLPLTDILTRHAA--SDSIAVID------------GE-----------RQLSYRELNQAADNLACSLRRQGIKPGE 76 (617)
T ss_dssp TSCCCCCTTHHHHTTTT--CCSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTC
T ss_pred CCCCcCCHHHHHHHhhC--CCCeEEec------------CC-----------ceEeHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 34555899999999988 99999986 33 3799999999999999999999999999
Q ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh-----hHHHHhhhcCCCccEEEE
Q 008134 157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIY 231 (576)
Q Consensus 157 ~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~vv~ 231 (576)
+|+++++|++++++++|||+++|+++||++|.++.+++.++++++++++++++.... ..+.......+....+..
T Consensus 77 ~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (617)
T 3rg2_A 77 TALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQL 156 (617)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEE
T ss_pred EEEEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeee
Confidence 999999999999999999999999999999999999999999999999999987654 333333444455555555
Q ss_pred ecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhC
Q 008134 232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311 (576)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~ 311 (576)
.+.... ..+.+....... .....+..++++|||+|||||||.||||+++|+++++.+.+....+
T Consensus 157 ~~~~~~---------------~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~ 220 (617)
T 3rg2_A 157 LNDSGE---------------HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC 220 (617)
T ss_dssp ETCCST---------------TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH
T ss_pred cccccc---------------cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc
Confidence 443221 123333332222 2223456789999999999999999999999999999999998888
Q ss_pred CCCCCCcEEEEecChHHHHHHH--HHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHH
Q 008134 312 PNPGRSDVYLAYLPLAHVLELA--AESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (576)
Q Consensus 312 ~~~~~~d~~l~~~pl~~~~~~~--~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~ 389 (576)
++.++|++++++|++|.+++. .++.+++.|+++++.+.... ..+...++++++|++.++|+++..+.+.
T Consensus 221 -~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~--------~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 291 (617)
T 3rg2_A 221 -QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSA--------TLCFPLIEKHQVNVTALVPPAVSLWLQA 291 (617)
T ss_dssp -TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCH--------HHHHHHHHHTTCCEEEECHHHHHHHHHH
T ss_pred -CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCH--------HHHHHHHHHhCCcEEEcchHHHHHHHHh
Confidence 999999999999999988876 48899999999999443211 1123349999999999999999998765
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh
Q 008134 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (576)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~ 469 (576)
...... ....++||.+++|||++++++.++|...+
T Consensus 292 ~~~~~~---------------------------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 326 (617)
T 3rg2_A 292 LIEGES---------------------------------------------RAQLASLKLLQVGGARLSATLAARIPAEI 326 (617)
T ss_dssp HHTTCC---------------------------------------------TTTTTTCCEEEEESSCCCHHHHHHHHHHT
T ss_pred hhcccc---------------------------------------------cccCCCccEEEEcCCcCCHHHHHHHHHHh
Confidence 322100 00114899999999999999999999999
Q ss_pred CCceecccCcccccCCccccCCCC-CCCCccCCCC-CCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCccc
Q 008134 470 GAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547 (576)
Q Consensus 470 ~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~-~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~ 547 (576)
+++++|.||+||+++.++...... ....++|+|+ ++++++|+| ++++. +|+|++|||+|+|+++++||||+|+.
T Consensus 327 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~---~p~G~~GEl~i~G~~v~~GY~~~p~~ 402 (617)
T 3rg2_A 327 GCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVAD-AEGNP---LPQGEVGRLMTRGPYTFRGYYKSPQH 402 (617)
T ss_dssp CSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCB---CCTTCCEEEEEECSSSCSCCTTCHHH
T ss_pred CCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEEC-CCCCC---CCCCCceEEEecCccccchhcCChhh
Confidence 999999999999986554332211 1125899997 788999999 66654 67999999999999999999999999
Q ss_pred chhhhcccccccceeeeCCeecccCccC
Q 008134 548 TSEVYKVNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 548 t~~~f~~~~~g~~~~~TGDlg~~d~d~e 575 (576)
|+++| .++| ||||||+|++|+||.
T Consensus 403 t~~~f--~~~~--~yrTGDl~~~~~dG~ 426 (617)
T 3rg2_A 403 NASAF--DANG--FYCSGDLISIDPEGY 426 (617)
T ss_dssp HHHHB--CTTS--CEEEEEEEEECTTSC
T ss_pred hhhcc--CCCC--ceecCceEEEcCCce
Confidence 99999 5566 999999999999985
No 20
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.9e-60 Score=528.15 Aligned_cols=413 Identities=17% Similarity=0.191 Sum_probs=328.1
Q ss_pred CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (576)
Q Consensus 82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~ 161 (576)
++++++|+++++++||++|+++.. + . .+..+++||+||.++++++|++|+++|+++||+|+|+
T Consensus 76 n~~~~~l~~~a~~~pd~~Al~~~~----------~-~------~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~ 138 (652)
T 1pg4_A 76 NLAANCLDRHLQENGDRTAIIWEG----------D-D------TSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIY 138 (652)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEEC----------S-S------TTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred hHHHHHHHHHhccCCCceEEEEEc----------C-C------CCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 578999999999999999999742 1 0 1233689999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh---------hHHHHhhhcCC--CccEEE
Q 008134 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---------KKLSAVSSSLK--TIKNVI 230 (576)
Q Consensus 162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~l~~~~~~~~--~~~~vv 230 (576)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++... +.+.+.....+ .+..++
T Consensus 139 ~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 218 (652)
T 1pg4_A 139 MPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI 218 (652)
T ss_dssp CCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEE
T ss_pred eCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEE
Confidence 9999999999999999999999999999999999999999999999987642 23344333332 456677
Q ss_pred EecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHH-HHHh
Q 008134 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA-AIKT 309 (576)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~ 309 (576)
+++...... ... ......|+++...... ........+++++||+|||||||+||||+++|++++..+. ....
T Consensus 219 ~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~ 291 (652)
T 1pg4_A 219 VLKRTGSDI-----DWQ-EGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY 291 (652)
T ss_dssp EECSSCCCC-----CCC-BTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHH
T ss_pred EEeCCCCcc-----ccc-CCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHH
Confidence 765432110 000 1123567777654322 1223455689999999999999999999999999887664 4455
Q ss_pred hCCCCCCCcEEEEecChHHHHHH-HHHHHHHHhCceEEECCccc-ccccchhhccCccccceeecccEEEecHHHHHHHH
Q 008134 310 LIPNPGRSDVYLAYLPLAHVLEL-AAESIMLCAGCAIGYGSTLT-MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVR 387 (576)
Q Consensus 310 ~~~~~~~~d~~l~~~pl~~~~~~-~~~~~~l~~G~~~~~~~~~~-l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~ 387 (576)
.+ +++++|++++++|++|+.+. +.++.+|+.|+++++.+... ..+ +..+++.|+++++|+++++|++++.|.
T Consensus 292 ~~-~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~ 365 (652)
T 1pg4_A 292 VF-DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT-----PARMCQVVDKHQVNILYTAPTAIRALM 365 (652)
T ss_dssp HT-TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSS-----TTHHHHHHHHHTCSEEEECHHHHHHHH
T ss_pred hc-CCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCC-----HHHHHHHHHHhCCeEEEeCHHHHHHHH
Confidence 67 89999999999999999998 55889999999999954321 112 233455599999999999999999886
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHh
Q 008134 388 EGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINI 467 (576)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~ 467 (576)
+..... .++...++||.+++|||++++++.+++.+
T Consensus 366 ~~~~~~---------------------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~ 400 (652)
T 1pg4_A 366 AEGDKA---------------------------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWK 400 (652)
T ss_dssp TTGGGG---------------------------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHH
T ss_pred hcCccc---------------------------------------------cccCCcCceEEEEEecCCCCHHHHHHHHH
Confidence 532100 00112258999999999999999999998
Q ss_pred hhC---CceecccCcccccCCccccCCC--CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEcc--Cccccc
Q 008134 468 CMG---APIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAG 540 (576)
Q Consensus 468 ~~~---~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G--~~v~~G 540 (576)
.+| ++++|.||+||+++.++...+. ....+++|+|++|++++|+| ++++. ++.|+.|||+|+| |++++|
T Consensus 401 ~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~---v~~g~~GEl~i~g~~p~~~~g 476 (652)
T 1pg4_A 401 KIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHP---QEGATEGNLVITDSWPGQART 476 (652)
T ss_dssp HTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCB---CCSSEEEEEEECSCCTTCCCE
T ss_pred HhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCC---cCCCceEEEEEccCCCchhhh
Confidence 888 8999999999998776655432 23558999999999999999 66665 5689999999999 799999
Q ss_pred ccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134 541 YFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 541 Y~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e 575 (576)
||++|+.+.+.|....+| ||+|||+|++|+||.
T Consensus 477 Y~~~~e~~~~~~~~~~~g--~y~TGDlg~~d~dG~ 509 (652)
T 1pg4_A 477 LFGDHERFEQTYFSTFKN--MYFSGDGARRDEDGY 509 (652)
T ss_dssp ETTCHHHHHHHHHSSSTT--SEEEEEEEEECTTSC
T ss_pred hcCCHHHHHhhhhhcCCC--EEECCcEEEEcCCCc
Confidence 999999999888544567 999999999999984
No 21
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.1e-60 Score=554.11 Aligned_cols=449 Identities=21% Similarity=0.245 Sum_probs=332.4
Q ss_pred CCcccccccccCCCcccchhhheeeccceeeehhhhhccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHH
Q 008134 7 SSFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAA 86 (576)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~ 86 (576)
+.|+.++.++..+.+|......+.+.+. .. +.. +......... .+..++|...|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~--------------~~~~~~~~~~---~~~~~~p~~~tl~~ 65 (979)
T 3tsy_A 9 HHSSGLVPRGSHMARMAPQEQAVSQVME----KQ--SNN--------------NNSDVIFRSK---LPDIYIPNHLSLHD 65 (979)
T ss_dssp --------------------------------------------------------CCCBCCS---SCCCCCCTTSCHHH
T ss_pred ccccCcccCcchhhhhhhHHHHHHHhhh----hc--ccC--------------CCCCceeecC---CCCCCCCCCCCHHH
Confidence 4567777777777776665555554221 11 111 1111112222 34455677789999
Q ss_pred HHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcH
Q 008134 87 LFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV 166 (576)
Q Consensus 87 ~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~ 166 (576)
+|+++++++||++|+++.+ +| +++||+||.++++++|++|+++|+++||+|+|+++|++
T Consensus 66 ~l~~~a~~~pd~~Al~~~~----------~~-----------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~ 124 (979)
T 3tsy_A 66 YIFQNISEFATKPCLINGP----------TG-----------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCP 124 (979)
T ss_dssp HHTTTGGGTTTSEEEEETT----------TC-----------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCH
T ss_pred HHHHHHHhCCCCeEEEECC----------CC-----------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCH
Confidence 9999999999999998631 23 37999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCC
Q 008134 167 EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGG 246 (576)
Q Consensus 167 ~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~ 246 (576)
++++++|||+++|+++||++|.++.+++.+++++++++++|++....+.+....... ...++.++......
T Consensus 125 e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------- 195 (979)
T 3tsy_A 125 EFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD--GVVIVCIDDNESVP------- 195 (979)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS--CCEEEECCCCTTSC-------
T ss_pred HHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC--CceEEEeCCccccc-------
Confidence 999999999999999999999999999999999999999999998877666554332 22345544321111
Q ss_pred CCCceEeehHHHHHcCCC--CCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHh----hCCCCCCCcEE
Q 008134 247 ISNWTVSSFSEVEKLGKR--SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT----LIPNPGRSDVY 320 (576)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~~d~~ 320 (576)
.......+.++...... ...+.....+++++||+|||||||.||||+++|+++++.+..... .+ .+.++|++
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~-~~~~~d~~ 273 (979)
T 3tsy_A 196 -IPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL-YFHSDDVI 273 (979)
T ss_dssp -CCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSS-CCCSSCEE
T ss_pred -CCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccc-cCCCCCEE
Confidence 11224556555433221 112234567899999999999999999999999999998877654 23 67889999
Q ss_pred EEecChHHHHHHHH-HHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHh
Q 008134 321 LAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396 (576)
Q Consensus 321 l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~ 396 (576)
++.+|++|++++.. ++.+|..|+++++.+ +..+.+. ++++++|++.++|+++..+.+.....
T Consensus 274 l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~--- 339 (979)
T 3tsy_A 274 LCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLEL-----------IQRCKVTVAPMVPPIVLAIAKSSETE--- 339 (979)
T ss_dssp EECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHHCGGGG---
T ss_pred EEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHH-----------HHHhCCeEEEcHHHHHHHHHhCcccc---
Confidence 99999999999965 678899999999943 3334444 99999999999999999887632110
Q ss_pred cCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceec
Q 008134 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQ 475 (576)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~ 475 (576)
....++||.+++||+++++++.++|++.+ +++++|
T Consensus 340 --------------------------------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~ 375 (979)
T 3tsy_A 340 --------------------------------------------KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ 375 (979)
T ss_dssp --------------------------------------------TSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEE
T ss_pred --------------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEe
Confidence 01125899999999999999999999888 899999
Q ss_pred ccCcccccCCcccc-----CCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchh
Q 008134 476 AYGLTETCAGSTFS-----EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550 (576)
Q Consensus 476 ~YG~TE~~~~~~~~-----~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~ 550 (576)
.||+||++++++.. .......+++|+|++|++++|+|++++.. +++|++|||+|+|+++++|||++|+.|++
T Consensus 376 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~---~~~g~~GEl~i~g~~v~~GY~~~p~~t~~ 452 (979)
T 3tsy_A 376 GYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDS---LSRNQPGEICIRGHQIMKGYLNNPAATAE 452 (979)
T ss_dssp CEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCB---CCTTCCEEEEEESTTSCSEETTCHHHHHH
T ss_pred eechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCC---CCCCCccEEEEECCCccccccCChhhhhh
Confidence 99999998775543 12233558999999999999999776765 56999999999999999999999999999
Q ss_pred hhcccccccceeeeCCeecccCccC
Q 008134 551 VYKVNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 551 ~f~~~~~g~~~~~TGDlg~~d~d~e 575 (576)
+| +.+| ||||||+|++|+||.
T Consensus 453 ~f--~~~g--~~~TGDl~~~~~dG~ 473 (979)
T 3tsy_A 453 TI--DKDG--WLHTGDIGLIDDDDE 473 (979)
T ss_dssp HB--CTTS--CEEEEEEEEECTTSC
T ss_pred hc--cCCC--cEEcCCEEEEcCCce
Confidence 99 5677 999999999999985
No 22
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=4e-60 Score=525.88 Aligned_cols=415 Identities=14% Similarity=0.131 Sum_probs=329.5
Q ss_pred CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEE
Q 008134 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLV-NFGHNVDTRAAI 160 (576)
Q Consensus 82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~-~~Gv~~gd~V~i 160 (576)
++++++|+++++++||++|+++.. + . .+..+++||+||.++++++|++|+ ++|+++||+|+|
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~----------~-~------~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i 144 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEG----------D-E------PGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAV 144 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEEC----------S-S------TTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEE
T ss_pred cHHHHHHHHHhccCCCceEEEEEc----------C-C------CCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 689999999999999999999742 1 0 123468999999999999999999 999999999999
Q ss_pred EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh---------hHHHHhhhcCCCccEEEE
Q 008134 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---------KKLSAVSSSLKTIKNVIY 231 (576)
Q Consensus 161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~l~~~~~~~~~~~~vv~ 231 (576)
+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++... +.+.+....++.++.+++
T Consensus 145 ~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 224 (663)
T 1ry2_A 145 YMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLV 224 (663)
T ss_dssp CCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEE
T ss_pred EcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999987643 234455555566777777
Q ss_pred ecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHH-HHHhh
Q 008134 232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA-AIKTL 310 (576)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~~ 310 (576)
++........ . .......|.++..... ...+.....+++++||+|||||||+||||+++|++++..+. .....
T Consensus 225 ~~~~~~~~~~----~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~ 298 (663)
T 1ry2_A 225 YRKTNNPSVA----F-HAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT 298 (663)
T ss_dssp ECSSCCSSCC----C-CSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH
T ss_pred EecCCCCccc----c-CCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHh
Confidence 7643210000 0 0112356777765322 22223456789999999999999999999999999887664 34456
Q ss_pred CCCCCCCcEEEEecChHHHHHH-HHHHHHHHhCceEEECCccc-ccccchhhccCccccceeecccEEEecHHHHHHHHH
Q 008134 311 IPNPGRSDVYLAYLPLAHVLEL-AAESIMLCAGCAIGYGSTLT-MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (576)
Q Consensus 311 ~~~~~~~d~~l~~~pl~~~~~~-~~~~~~l~~G~~~~~~~~~~-l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~ 388 (576)
+ ++.++|++++.+|++|+.+. +.++.+|+.|+++++.+... ..+ +..+++.|+++++|+++++|++++.|.+
T Consensus 299 ~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~-----~~~~~~~i~~~~vt~~~~~Ps~~~~l~~ 372 (663)
T 1ry2_A 299 F-DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPN-----YSRYWDIIDEHKVTQFYVAPTALRLLKR 372 (663)
T ss_dssp S-CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSC-----TTHHHHHHHHTTCSEEEECHHHHHHHTT
T ss_pred c-CCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCC-----HHHHHHHHHHcCCCEEEecHHHHHHHHh
Confidence 7 89999999999999999998 45789999999999954321 112 2334555999999999999999998764
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 008134 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (576)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~ 468 (576)
..... .++...++||.+++|||++++++.+++.+.
T Consensus 373 ~~~~~---------------------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 407 (663)
T 1ry2_A 373 AGDSY---------------------------------------------IENHSLKSLRCLGSVGEPIAAEVWEWYSEK 407 (663)
T ss_dssp SCTTS---------------------------------------------SSSCCCTTCCEEEECSSCCCHHHHHHHHHT
T ss_pred cCccc---------------------------------------------cccCCcCceEEEEEEcCCCCHHHHHHHHHH
Confidence 21100 000112589999999999999999999998
Q ss_pred hC---CceecccCcccccCCccccCC---CCCCCCccCCCCCCcEEEEeecCCCCCcCCCCC-CCCceEEEcc--Ccccc
Q 008134 469 MG---APIGQAYGLTETCAGSTFSEW---DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKP-MPRGEIVVGG--FNVTA 539 (576)
Q Consensus 469 ~~---~~l~~~YG~TE~~~~~~~~~~---~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~-g~~GEl~v~G--~~v~~ 539 (576)
+| ++++|.||+||+++.++...+ ...+.+++|+|++|++++|+|+++++.+ +. |+.|||+|+| |++++
T Consensus 408 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v---~~~g~~Gel~i~g~~p~~~~ 484 (663)
T 1ry2_A 408 IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL---NTSHAEGVLAVKAAWPSFAR 484 (663)
T ss_dssp TSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCE---ECSSCEEEEEESSCCTTSCC
T ss_pred hCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcC---CCCCcceEEEEecCCCchhc
Confidence 87 899999999999877665443 2345689999999999999995477654 35 8899999999 58999
Q ss_pred cccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134 540 GYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 540 GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e 575 (576)
|||++|+.|.+.|....+| ||+|||+|++|+||.
T Consensus 485 gy~~~~~~~~~~~~~~~~g--~y~TGDlg~~d~dG~ 518 (663)
T 1ry2_A 485 TIWKNHDRYLDTYLNPYPG--YYFTGDGAAKDKDGY 518 (663)
T ss_dssp EETTCHHHHHHHHTSSSTT--SEEEEEEEEECTTCC
T ss_pred ccccChHHHHHhhhcCCCC--EEEcCCEEEEcCCCC
Confidence 9999999999998554577 999999999999984
No 23
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=2.5e-60 Score=515.73 Aligned_cols=392 Identities=20% Similarity=0.214 Sum_probs=313.0
Q ss_pred CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (576)
Q Consensus 81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i 160 (576)
.+++.++|+++++ +||++|+++ +++ ++||+||.++++++|++|+++|+++||+|++
T Consensus 23 ~~~~~~~l~~~~~-~p~~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 78 (529)
T 2v7b_A 23 FNFAAYLFRLNET-RAGKTAYID------------DTG-----------STTYGELEERARRFASALRTLGVHPEERILL 78 (529)
T ss_dssp CCHHHHHHHHTGG-GTTSEEEEC------------SSC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred eeHHHHHHHhhhc-cCCceEEEe------------CCC-----------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3569999999999 999999985 333 7999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCc-cEEEEecCCCCCC
Q 008134 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI-KNVIYFENDGSEK 239 (576)
Q Consensus 161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~-~~vv~~~~~~~~~ 239 (576)
+++|++++++++|||+++|+++||+++.++.+++.+++++++++++|++....+.+.......+.. ..++.++.....
T Consensus 79 ~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 157 (529)
T 2v7b_A 79 VMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESE- 157 (529)
T ss_dssp ECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC-----
T ss_pred EcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccc-
Confidence 999999999999999999999999999999999999999999999999998777666654444444 445554432110
Q ss_pred CCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHH-HHHHHHHHhhCCCCCCCc
Q 008134 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI-VATAAAIKTLIPNPGRSD 318 (576)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~~d 318 (576)
......++++..... .........++++++|+|||||||.||||+++|+++ .+........+ ++.++|
T Consensus 158 ---------~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-~~~~~d 226 (529)
T 2v7b_A 158 ---------PRLAPLFEELIDAAA-PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-GIAEND 226 (529)
T ss_dssp -----------CCCBHHHHHHTSC-CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-CCCTTC
T ss_pred ---------cccccchhhhhccCC-CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-CCCCCc
Confidence 011234666654322 122234567899999999999999999999999999 55554444455 788999
Q ss_pred EEEEecChHHHHHHHH-HHHHHHhCceEEEC----CcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHH
Q 008134 319 VYLAYLPLAHVLELAA-ESIMLCAGCAIGYG----STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK 393 (576)
Q Consensus 319 ~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~----~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~ 393 (576)
++++.+|++|++++.. ++.++..|+++++. ++..+.+ .+.++++|+++++|+++..++.....
T Consensus 227 ~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------~i~~~~~t~~~~~P~~~~~l~~~~~~- 294 (529)
T 2v7b_A 227 VVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFA-----------RLVEHRPTVFYGVPTLYANMLVSPNL- 294 (529)
T ss_dssp EEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHH-----------HHHHSCCSEEEECHHHHHHHHTCTTC-
T ss_pred EEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHH-----------HHHHhCCEEEEecHHHHHHHHhCccc-
Confidence 9999999999999876 66789999999985 3333333 39999999999999999887642100
Q ss_pred HHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCce
Q 008134 394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI 473 (576)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l 473 (576)
.. ....+||.+++||+++++++.++|++.+|+++
T Consensus 295 ----~~------------------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i 328 (529)
T 2v7b_A 295 ----PA------------------------------------------RADVAIRICTSAGEALPREIGERFTAHFGCEI 328 (529)
T ss_dssp ----CC------------------------------------------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCE
T ss_pred ----cc------------------------------------------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCce
Confidence 00 00037999999999999999999999999999
Q ss_pred ecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhc
Q 008134 474 GQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553 (576)
Q Consensus 474 ~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~ 553 (576)
+|.||+||++.+++.........+++|+|++|++++|+| ++++. +++|+.|||+|+|++++.|||++|+.|+++|
T Consensus 329 ~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~---~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f- 403 (529)
T 2v7b_A 329 LDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRD-EAGHA---VPDGEVGDLYIKGPSAAVMYWNNREKSRATF- 403 (529)
T ss_dssp EEEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEEC-TTSCB---CCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-
T ss_pred eeeEchhhcCceeeccccCCCccCCcccCCCCCEEEEEC-CCCCC---CCCCCccEEEEecCCcccccCCChHHHHHhh-
Confidence 999999999776655544445668999999999999999 66665 6699999999999999999999999999999
Q ss_pred ccccccceeeeCCeecccCccC
Q 008134 554 VNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 554 ~~~~g~~~~~TGDlg~~d~d~e 575 (576)
.+| ||+|||+|++|+||.
T Consensus 404 --~~~--~~~TGDl~~~~~~G~ 421 (529)
T 2v7b_A 404 --LGE--WIRSGDKYCRLPNGC 421 (529)
T ss_dssp --ETT--EEEEEEEEEECTTSC
T ss_pred --hcC--CcccCceEEECCCcc
Confidence 366 999999999999974
No 24
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=5.3e-60 Score=510.87 Aligned_cols=382 Identities=17% Similarity=0.166 Sum_probs=316.5
Q ss_pred CHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEE
Q 008134 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRAAIL 161 (576)
Q Consensus 83 tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~gd~V~i~ 161 (576)
++.++|+++|+++||++|+++ +++ ++||+||.++++++|++|++. |.++|++|+++
T Consensus 2 ~l~~~l~~~a~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~ 58 (511)
T 3e7w_A 2 KLLHAIQTHAETYPQTDAFRS------------QGQ-----------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVY 58 (511)
T ss_dssp CHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEE
T ss_pred cHHHHHHHHHHHCCCCeEEEc------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEE
Confidence 789999999999999999986 433 799999999999999999985 88899999999
Q ss_pred cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCC
Q 008134 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (576)
Q Consensus 162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~ 241 (576)
++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++...... .
T Consensus 59 ~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~------------------- 113 (511)
T 3e7w_A 59 GHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------A------------------- 113 (511)
T ss_dssp ESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------C-------------------
T ss_pred ecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------h-------------------
Confidence 999999999999999999999999999999999999999999999997643210 0
Q ss_pred CCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 008134 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321 (576)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l 321 (576)
........+++++...............++++++|+|||||||.||||+++|+++.+.+.+....+ ++.++|+++
T Consensus 114 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l 188 (511)
T 3e7w_A 114 ----VGQQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-PVSGGKIFL 188 (511)
T ss_dssp ----CCCSSCEEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-TTTTTCEEE
T ss_pred ----cccccceecHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCccceEE
Confidence 001234566666665443333333456789999999999999999999999999999999998888 999999999
Q ss_pred EecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchh
Q 008134 322 AYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLT 401 (576)
Q Consensus 322 ~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~ 401 (576)
+.+|++|+.+++.++.++..|+++++.+.....+. ..+++.++++++|++.++|+++..++.....
T Consensus 189 ~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------- 254 (511)
T 3e7w_A 189 NQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKP-----KVLFEELKKSGLNVWTSTPSFVQMCLMDPGF--------- 254 (511)
T ss_dssp ECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSH-----HHHHHHHHHHCCSEEEECHHHHHHHHTSTTC---------
T ss_pred EeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCH-----HHHHHHHHHcCCcEEEecHHHHHHHHhcccc---------
Confidence 99999999999889999999999999544322221 2233349999999999999999987652110
Q ss_pred HHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecccCcc
Q 008134 402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLT 480 (576)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~T 480 (576)
.+...+++|.+++||+++++++.+++.+.+ +++++|.||+|
T Consensus 255 --------------------------------------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~T 296 (511)
T 3e7w_A 255 --------------------------------------SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPT 296 (511)
T ss_dssp --------------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCG
T ss_pred --------------------------------------ccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccc
Confidence 001125899999999999999999999988 89999999999
Q ss_pred cccCCccccCCC-----CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhccc
Q 008134 481 ETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVN 555 (576)
Q Consensus 481 E~~~~~~~~~~~-----~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~ 555 (576)
|+++.++..... .....++|+|++|++++|+| ++++. +++|+.|||+|+|+++++|||++|+.|+++|+.
T Consensus 297 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~- 371 (511)
T 3e7w_A 297 EATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQP---LPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFS- 371 (511)
T ss_dssp GGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCB---CCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEE-
T ss_pred hheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCC---CCCCCceEEEEecCccChhhCCCcccchhhhcC-
Confidence 998876643321 23446899999999999999 66654 679999999999999999999999999999943
Q ss_pred ccccceeeeCCeecccCccC
Q 008134 556 FHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 556 ~~g~~~~~TGDlg~~d~d~e 575 (576)
.+|.+||+|||+|+++ ||.
T Consensus 372 ~~g~~~~~TGDlg~~~-dG~ 390 (511)
T 3e7w_A 372 HEGQWAYRTGDAGFIQ-DGQ 390 (511)
T ss_dssp SSSSEEEEEEEEEEEE-TTE
T ss_pred CCCCEEEeCCCeEEcc-CCe
Confidence 3566789999999994 663
No 25
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=5.2e-60 Score=512.40 Aligned_cols=383 Identities=18% Similarity=0.176 Sum_probs=311.4
Q ss_pred CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (576)
Q Consensus 81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i 160 (576)
..++.++|+++++++||++|+.+ .++ ++||+||.++++++|++|+++|+++||+|++
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i 59 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDC------------LGE-----------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLV 59 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEE
T ss_pred HHHHHHHHHHHHHHCCCCcceec------------CCC-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 36899999999999999999986 443 7999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCC
Q 008134 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (576)
Q Consensus 161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~ 240 (576)
+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.+....+.
T Consensus 60 ~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~----------------------- 116 (521)
T 3l8c_A 60 FGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE----------------------- 116 (521)
T ss_dssp EECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT-----------------------
T ss_pred EeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc-----------------------
Confidence 999999999999999999999999999999999999999999999999876432110
Q ss_pred CCCCCCCCCceEeehHHHHHcC--CCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhh--CCCCCC
Q 008134 241 SGVSGGISNWTVSSFSEVEKLG--KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL--IPNPGR 316 (576)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~ 316 (576)
......+.++.... ...........++++++|+|||||||.||||+++|+++++.+.+.... + .+..
T Consensus 117 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~ 187 (521)
T 3l8c_A 117 --------GISLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAF-DVPK 187 (521)
T ss_dssp --------TSEEEEHHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTT-CCCS
T ss_pred --------cCcccchhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcccc-CCCC
Confidence 22334444443221 111222345678999999999999999999999999999988777665 5 7889
Q ss_pred CcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHh
Q 008134 317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396 (576)
Q Consensus 317 ~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~ 396 (576)
++++++..|++|+.++..++.++..|+++++.+.....+. ..++..+.++++|++.++|+++..+......
T Consensus 188 ~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---- 258 (521)
T 3l8c_A 188 QPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADF-----KQLFTTIAQLPVGIWTSTPSFADMAMLSDDF---- 258 (521)
T ss_dssp SCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCH-----HHHHHHHHHSCCSEEEECHHHHHHHHTSTTC----
T ss_pred CCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCH-----HHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc----
Confidence 9999999999999999888999999999998544322222 2233449999999999999999877542110
Q ss_pred cCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceec
Q 008134 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQ 475 (576)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~ 475 (576)
.....++||.+++||+++++++.+++.+.+ +++++|
T Consensus 259 -------------------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~ 295 (521)
T 3l8c_A 259 -------------------------------------------CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIIN 295 (521)
T ss_dssp -------------------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred -------------------------------------------ccccCccceEEEEecccCCHHHHHHHHHHCCCceEEe
Confidence 001125899999999999999999998887 899999
Q ss_pred ccCcccccCCccccCCC-----CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchh
Q 008134 476 AYGLTETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550 (576)
Q Consensus 476 ~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~ 550 (576)
.||+||+++.++..... .....++|+|++|++++|+| +++.. +++|+.|||+|+|++++.|||++|+.|++
T Consensus 296 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 371 (521)
T 3l8c_A 296 AYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKE---LSSGEQGEIIVTGPAVSKGYLNNPEKTAE 371 (521)
T ss_dssp EECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCB---CCTTCCEEEEEESTTSCSCBTTCHHHHHH
T ss_pred CcCccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCC---CCCCCceEEEecccccChhhcCCchHhhc
Confidence 99999998876644322 12446899999999999999 66665 56999999999999999999999999999
Q ss_pred hhcccccccceeeeCCeecccCccC
Q 008134 551 VYKVNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 551 ~f~~~~~g~~~~~TGDlg~~d~d~e 575 (576)
+|.. .+|.+||+|||+|++|+||.
T Consensus 372 ~f~~-~~~~~~~~TGDlg~~d~dG~ 395 (521)
T 3l8c_A 372 AFFT-FKGQPAYHTGDIGSLTEDNI 395 (521)
T ss_dssp HEEE-ETTEEEEEEEEEEEECSSSC
T ss_pred cCcC-CCCceeeeCCCEEEEeCCCe
Confidence 9943 24455999999999999984
No 26
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=2.5e-60 Score=513.65 Aligned_cols=380 Identities=17% Similarity=0.159 Sum_probs=307.9
Q ss_pred CHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 008134 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA 162 (576)
Q Consensus 83 tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~ 162 (576)
++.++|+++++++||++|+++ .+ +++||+||.++++++|++|+++|+++||+|++++
T Consensus 2 ~l~~~l~~~a~~~p~~~A~~~------------~~-----------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~ 58 (512)
T 3fce_A 2 KLLEQIEKWAAETPDQTAFVW------------RD-----------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYG 58 (512)
T ss_dssp CHHHHHHHHHHHSTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEE
T ss_pred cHHHHHHHHHHHCCCceEEEe------------CC-----------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEe
Confidence 789999999999999999987 33 3799999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCC
Q 008134 163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242 (576)
Q Consensus 163 ~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~ 242 (576)
+|++++++++|||+++|+++||++|.++.+++.+++++++++++|++...... ..
T Consensus 59 ~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~---------~~---------------- 113 (512)
T 3fce_A 59 HMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT---------DL---------------- 113 (512)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS---------CC----------------
T ss_pred CCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc---------cc----------------
Confidence 99999999999999999999999999999999999999999999997543210 00
Q ss_pred CCCCCCCceEee---hHHHHHcCC-CCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCc
Q 008134 243 VSGGISNWTVSS---FSEVEKLGK-RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD 318 (576)
Q Consensus 243 ~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d 318 (576)
...... +.++..... ..+.+.....++++++|+|||||||.||||+++|+++++.+.+....+ ++.++|
T Consensus 114 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~~d 186 (512)
T 3fce_A 114 ------PVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-NLQTGQ 186 (512)
T ss_dssp ------SSEEEETHHHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-TCCSSC
T ss_pred ------ccceechhhhhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-CCCCCC
Confidence 011122 222222111 112223456789999999999999999999999999999999998888 999999
Q ss_pred EEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcC
Q 008134 319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (576)
Q Consensus 319 ~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~ 398 (576)
++++.+|++|+.+++.++.+++.|+++++.+.....+. ..++..++++++|++.++|+++..++.....
T Consensus 187 ~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------ 255 (512)
T 3fce_A 187 VFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARP-----KDLFASLEQSDIQVWTSTPSFAEMCLMEASF------ 255 (512)
T ss_dssp EEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSH-----HHHHHHHHHHCCCEEEECHHHHHHHTTSTTC------
T ss_pred EEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCH-----HHHHHHHHHcCCcEEEecHHHHHHHHhhccc------
Confidence 99999999999999889999999999999554322222 2233349999999999999999887542110
Q ss_pred chhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceeccc
Q 008134 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAY 477 (576)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~Y 477 (576)
.+...++||.+++||+++++++.++|.+.+ +++++|.|
T Consensus 256 -----------------------------------------~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 294 (512)
T 3fce_A 256 -----------------------------------------SESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTY 294 (512)
T ss_dssp -----------------------------------------STTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred -----------------------------------------cchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCc
Confidence 011125899999999999999999999888 89999999
Q ss_pred CcccccCCccccCCCC-----CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhh
Q 008134 478 GLTETCAGSTFSEWDD-----PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVY 552 (576)
Q Consensus 478 G~TE~~~~~~~~~~~~-----~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f 552 (576)
|+||+++.++...... ....++|+|+++++++|+| +++.. +++|+.|||+|+|++++.|||++|+.|+++|
T Consensus 295 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f 370 (512)
T 3fce_A 295 GPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTI---APDGEKGEIVIVGPSVSVGYLGSPELTEKAF 370 (512)
T ss_dssp CCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCB---CCTTSCEEEEEESTTSCSCBTTCHHHHHHHE
T ss_pred ccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCC---CCCCCeEEEEEeccccChhhcCCchhhhhcc
Confidence 9999988776543321 2457899999999999999 67665 5689999999999999999999999999999
Q ss_pred cccccccceeeeCCeecccCccC
Q 008134 553 KVNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 553 ~~~~~g~~~~~TGDlg~~d~d~e 575 (576)
. ..+|++||+|||+|++ +||.
T Consensus 371 ~-~~~~~~~~~TGDlg~~-~dG~ 391 (512)
T 3fce_A 371 T-MIDGERAYKTGDAGYV-ENGL 391 (512)
T ss_dssp E-EETTEEEEEEEEEEEE-ETTE
T ss_pred c-cCCCCEEEeCCceEEe-cCCE
Confidence 3 2355569999999999 6763
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.2e-59 Score=517.36 Aligned_cols=401 Identities=18% Similarity=0.188 Sum_probs=313.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 008134 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (576)
Q Consensus 79 ~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V 158 (576)
+...|+.++|+++++++||++|+++.+ + +..+++||+||.++++++|++|+++|+++||+|
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~-----------~--------~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V 68 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLN-----------K--------ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRV 68 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEE-----------T--------TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEc-----------C--------CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 334799999999999999999998752 1 122589999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHHhCCCEEEEccCCC---CHHHHHHHHhccCceEEEECchhhhHHHHhh-hcCCCccEEEEecC
Q 008134 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSL---GEDALIHSLNETQVTTLICDSKQLKKLSAVS-SSLKTIKNVIYFEN 234 (576)
Q Consensus 159 ~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~-~~~~~~~~vv~~~~ 234 (576)
+++++|++++++++|||+++|+++||++|.+ +.+++.++++++++++++++.+....+.... ...+....
T Consensus 69 ~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~------ 142 (590)
T 3kxw_A 69 LLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLK------ 142 (590)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETT------
T ss_pred EEEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccc------
Confidence 9999999999999999999999999999988 4578999999999999999988765543322 11111111
Q ss_pred CCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCC
Q 008134 235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (576)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 314 (576)
+.....+++.... .....+....++++++|+|||||||.||||+++|+++++.+.+....+ ++
T Consensus 143 ---------------~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~ 205 (590)
T 3kxw_A 143 ---------------IPAIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-HM 205 (590)
T ss_dssp ---------------EEEEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-TC
T ss_pred ---------------cceeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-CC
Confidence 1122222221111 112223456789999999999999999999999999999999998888 99
Q ss_pred CCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHH
Q 008134 315 GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK 393 (576)
Q Consensus 315 ~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~ 393 (576)
.++|++++++|++|++++.. ++.+++.|+++++.++..+... +..+++.|+++++|++.++|+++..+.+.....
T Consensus 206 ~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~ 281 (590)
T 3kxw_A 206 NDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQN----PLSWLKHITKYKATISGSPNFAYDYCVKRIREE 281 (590)
T ss_dssp CTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHC----THHHHHHHHHHTCSEEEECTHHHHHHHHHCCGG
T ss_pred CCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHC----HHHHHHHHHHhCCeeecCChhHHHHHHHHhhhh
Confidence 99999999999999999987 7889999999999543322111 122333499999999999999999887642110
Q ss_pred HHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhC---
Q 008134 394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG--- 470 (576)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~--- 470 (576)
.. .....++||.+++||+++++++.++|.+.++
T Consensus 282 ~~--------------------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g 317 (590)
T 3kxw_A 282 KK--------------------------------------------EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFG 317 (590)
T ss_dssp GG--------------------------------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGT
T ss_pred hc--------------------------------------------cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcC
Confidence 00 0111258999999999999999999988873
Q ss_pred ---CceecccCcccccCCccccCCC---------------------------CCCCCccCCCCCCcEEEEeecCCCCCcC
Q 008134 471 ---APIGQAYGLTETCAGSTFSEWD---------------------------DPSVGRVGPPVPCCYIKLVSWDEGGYKT 520 (576)
Q Consensus 471 ---~~l~~~YG~TE~~~~~~~~~~~---------------------------~~~~~~vG~p~~~~~~~ivd~~~~~~~~ 520 (576)
++++|.||+||+++.++...+. .....++|+|+++ ++|+|++++..
T Consensus 318 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~-- 393 (590)
T 3kxw_A 318 FRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIP-- 393 (590)
T ss_dssp CCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCB--
T ss_pred CCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcC--
Confidence 4799999999999877654321 1123689999998 88999655554
Q ss_pred CCCCCCCceEEEccCcccccccCCcccchhhhcccc----cccceeeeCCeecccCccC
Q 008134 521 SDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF----HCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 521 ~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~----~g~~~~~TGDlg~~d~d~e 575 (576)
+++|++|||+|+|+++++|||++|+.|+++|..++ +|.+||+|||+|++| ||.
T Consensus 394 -~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~ 450 (590)
T 3kxw_A 394 -CDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENE 450 (590)
T ss_dssp -CCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTE
T ss_pred -CCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCE
Confidence 67999999999999999999999999999995321 356699999999999 763
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.9e-58 Score=504.59 Aligned_cols=396 Identities=20% Similarity=0.184 Sum_probs=307.3
Q ss_pred CCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCE
Q 008134 78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR 157 (576)
Q Consensus 78 ~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~ 157 (576)
+....++.++|+++++++||++|+++.+-.. +.. ....+++||+||+++++++|++|++.|+ +||+
T Consensus 16 ~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~-------~~~------~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~ 81 (562)
T 3ite_A 16 YTSTVPPSHYIETWAKTHPEWKAVEVATGFL-------GSQ------KIVTEDWTYKKLNETANQVANLIIHASL-HGRA 81 (562)
T ss_dssp --CCCCTTHHHHHHHHHCTTSEEEEEEECC------------------CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCE
T ss_pred ecccCCHHHHHHHHHHHCCCchhhhcccccc-------ccc------ccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCE
Confidence 3444789999999999999999998742000 000 1223689999999999999999999999 7999
Q ss_pred EEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCC
Q 008134 158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS 237 (576)
Q Consensus 158 V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~ 237 (576)
|+++++|++++++++|||+++|+++|||+|.++.+++.+++++++++++|++......+ ..+....++..+
T Consensus 82 V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~---- 152 (562)
T 3ite_A 82 IAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTK---- 152 (562)
T ss_dssp EEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETT----
T ss_pred EEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeeccc----
Confidence 99999999999999999999999999999999999999999999999999987654321 011111111100
Q ss_pred CCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhC------
Q 008134 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI------ 311 (576)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~------ 311 (576)
...+.+........ .......++++++|+|||||||.||||+++|+++.+.+......+
T Consensus 153 --------------~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~ 217 (562)
T 3ite_A 153 --------------NQSFIENLSTQDTS-DILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPK 217 (562)
T ss_dssp --------------CHHHHHHHHHSCCS-CCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGG
T ss_pred --------------chhhhhhccccccc-ccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccch
Confidence 01122222222111 122345678899999999999999999999999998877654431
Q ss_pred -CCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHH
Q 008134 312 -PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (576)
Q Consensus 312 -~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~ 390 (576)
..+...+++++..|++|+.++..++.++..|+++++.+.....+ .+...++++++|+++++|++++.+....
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~-------~~~~~i~~~~~t~~~~~P~~l~~~~~~~ 290 (562)
T 3ite_A 218 SLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLD-------DLPRTFRELGVTHAGIVPSLLDQTGLVP 290 (562)
T ss_dssp GGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHH-------SHHHHHHHTTCCEEEECHHHHHHHTCCG
T ss_pred hcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHH-------HHHHHHHHcCCCEEEcCHHHHhhcccCc
Confidence 14778899999999999999988999999999999855432222 1334489999999999999887642210
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhC
Q 008134 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG 470 (576)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~ 470 (576)
...++||.+++||+++++++.++|++.++
T Consensus 291 ---------------------------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~ 319 (562)
T 3ite_A 291 ---------------------------------------------------EDAPHLVYLGVGGEKMTPRTQQIWSSSDR 319 (562)
T ss_dssp ---------------------------------------------------GGSTTCCEEEEESSCCCHHHHHHHTTCSS
T ss_pred ---------------------------------------------------cccCceEEEEEecCCCCHHHHHHHhhCCC
Confidence 01248999999999999999999999889
Q ss_pred CceecccCcccccCCccccCCC-CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccch
Q 008134 471 APIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549 (576)
Q Consensus 471 ~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~ 549 (576)
++++|.||+||+++.++..... .....++|+|+++++++|+|++++.. +++|+.|||+|+|+++++|||++|+.|+
T Consensus 320 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~---~~~g~~GEl~v~g~~v~~GY~~~p~~t~ 396 (562)
T 3ite_A 320 VALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEH---VKKGMAGELVIEGSLVANGYLNRPDAKG 396 (562)
T ss_dssp CEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCB---CCTTSCEEEEEESTTSCCEESSCTTCCS
T ss_pred cEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCC---CCCCCceEEEEeccccchhhCCCccccc
Confidence 9999999999998877655433 33457999999999999999655544 5799999999999999999999999998
Q ss_pred hhhcccccccceeeeCCeecccCccC
Q 008134 550 EVYKVNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 550 ~~f~~~~~g~~~~~TGDlg~~d~d~e 575 (576)
..| .+|.+||+|||+|++|+||.
T Consensus 397 ~~~---~~g~~w~~TGDlg~~d~dG~ 419 (562)
T 3ite_A 397 FCD---INGRKMYRTGDIVRMDADSS 419 (562)
T ss_dssp EEE---ETTEEEEEEEEEEEECTTSC
T ss_pred ccc---CCCCEEEecCCEEEEcCCCe
Confidence 665 46677999999999999985
No 29
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.3e-59 Score=506.53 Aligned_cols=373 Identities=23% Similarity=0.277 Sum_probs=297.7
Q ss_pred CCCCHHHHHHHHHHhCCC-CcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 008134 80 GASTMAALFEQSCKSHPQ-DRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (576)
Q Consensus 80 ~~~tl~~~~~~~a~~~Pd-~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V 158 (576)
.+.++.++|+++++++|+ ++|+++ ++ +++||+||.++++++|++|. .|++|
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~------------~~-----------~~~Ty~eL~~~~~~~A~~L~-----~~~~V 71 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRF------------GE-----------RSLTYAELAAAAGATAGRIG-----GAGRV 71 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEE------------TT-----------EEEEHHHHHHHHHHHHTTCC--------CE
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEE------------CC-----------eeeeHHHHHHHHHHHHhhcc-----CCCEE
Confidence 357899999999999987 999986 33 37999999999999998874 38899
Q ss_pred EEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCC
Q 008134 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (576)
Q Consensus 159 ~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~ 238 (576)
+++++|++++++++|||+++|+++|||+|.++.+++.+++++++++++|++.+... ......+..+ .++..
T Consensus 72 ~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~-~~~~~--- 142 (505)
T 3nyq_A 72 AVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERV-DVDVR--- 142 (505)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEE-ECCTT---
T ss_pred EEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhcccccc-ccccc---
Confidence 99999999999999999999999999999999999999999999999999865210 0111111111 11100
Q ss_pred CCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCc
Q 008134 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD 318 (576)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d 318 (576)
.....+.....+++++||+|||||||.||||+++|+++++.+.+....+ ++.++|
T Consensus 143 ------------------------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d 197 (505)
T 3nyq_A 143 ------------------------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-QWTGED 197 (505)
T ss_dssp ------------------------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-TCCTTC
T ss_pred ------------------------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-CCCCCc
Confidence 0111223455789999999999999999999999999999999998888 999999
Q ss_pred EEEEecChHHHHHHHH-HHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHH
Q 008134 319 VYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (576)
Q Consensus 319 ~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~ 394 (576)
++++.+|++|..++.. ++.+|..|+++++.+ +..+.+. + ++++|+++++|+++..+.+......
T Consensus 198 ~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i-~~~~t~~~~~P~~~~~l~~~~~~~~ 265 (505)
T 3nyq_A 198 VLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARE-----------L-NDGATMLFGVPTMYHRIAETLPADP 265 (505)
T ss_dssp EEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHH-----------H-TTTCCEEEECHHHHHHHHHHGGGCH
T ss_pred EEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHH-----------H-hhCCeEEEehHHHHHHHHHhhhcCc
Confidence 9999999999999864 889999999999843 3333333 6 7899999999999999876422100
Q ss_pred HhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCcee
Q 008134 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474 (576)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~ 474 (576)
.. .. ..+++|.+++||+++++++.+++.+.++++++
T Consensus 266 ~~---------------------------------------~~-----~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~ 301 (505)
T 3nyq_A 266 EL---------------------------------------AK-----ALAGARLLVSGSAALPVHDHERIAAATGRRVI 301 (505)
T ss_dssp HH---------------------------------------HH-----HHHHCSEEEECSSCCCHHHHHHHHHHHSCCCE
T ss_pred hh---------------------------------------hc-----ccccceEEEECCCCCCHHHHHHHHHhcCCeee
Confidence 00 00 01379999999999999999999999999999
Q ss_pred cccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcc
Q 008134 475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554 (576)
Q Consensus 475 ~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~ 554 (576)
|.||+||+++.++.........+++|+|++|++++|+| +++..++.++.|++|||+|+|++++.|||++|+.|+++|
T Consensus 302 ~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f-- 378 (505)
T 3nyq_A 302 ERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAF-- 378 (505)
T ss_dssp EEEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTB--
T ss_pred cccchhhcccccccCCCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhh--
Confidence 99999999887776655555668999999999999999 667665544558999999999999999999999999999
Q ss_pred cccccceeeeCCeecccCccC
Q 008134 555 NFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 555 ~~~g~~~~~TGDlg~~d~d~e 575 (576)
.++| ||||||+|++|+||.
T Consensus 379 ~~~g--~y~TGDl~~~~~dG~ 397 (505)
T 3nyq_A 379 TEDG--FFRTGDMAVRDPDGY 397 (505)
T ss_dssp CTTS--CEEEEEEEEECTTSC
T ss_pred cCCC--CCccCCeEEECCCcc
Confidence 5577 999999999999985
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.8e-57 Score=498.80 Aligned_cols=398 Identities=21% Similarity=0.233 Sum_probs=316.7
Q ss_pred ccccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCC
Q 008134 74 VEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHN 153 (576)
Q Consensus 74 ~~~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~ 153 (576)
....++...|+.++|+++++++|+.+++.. .. +..+++||+||.++++++|++|+++|++
T Consensus 13 ~~~~~~~~~tl~~~l~~~a~~~p~~~~~~~-------------~~-------~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~ 72 (576)
T 3gqw_A 13 LPMRYADFPTLVDALDYAALSSAGMNFYDR-------------RC-------QLEDQLEYQTLKARAEAGAKRLLSLNLK 72 (576)
T ss_dssp -CCCCSCCSSHHHHHHHHTTSSCEEEEECT-------------TS-------CEEEEEEHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCcccCCCCcHHHHHHHHhhCCCCeEEeCC-------------CC-------CceeEEcHHHHHHHHHHHHHHHHHcCCC
Confidence 344556778999999999999999887742 11 1225899999999999999999999999
Q ss_pred CCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCC-------HHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCc
Q 008134 154 VDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG-------EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI 226 (576)
Q Consensus 154 ~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~ 226 (576)
+||+|+++++|++++++++|||+++|+++||+++.++ .+++.+++++++++++|++.+....+.......+..
T Consensus 73 ~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 152 (576)
T 3gqw_A 73 KGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPEL 152 (576)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcc
Confidence 9999999999999999999999999999999999999 899999999999999999998877776655433322
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHH
Q 008134 227 KNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA 306 (576)
Q Consensus 227 ~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~ 306 (576)
.......... ............++++++|+|||||||.||||+++|+++++.+..
T Consensus 153 ------------------------~~~~~~~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~ 207 (576)
T 3gqw_A 153 ------------------------HVLSHAWFKA-LPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRA 207 (576)
T ss_dssp ------------------------EEEEHHHHHT-SCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHH
T ss_pred ------------------------eecchhhhhc-ccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHH
Confidence 1222222211 112222234557899999999999999999999999999998888
Q ss_pred HHhh-CCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHH
Q 008134 307 IKTL-IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFD 384 (576)
Q Consensus 307 ~~~~-~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~ 384 (576)
.... + .+.++|++++.+|++|+++++. ++.++..|+++++.....+... +..+++.++++++|+++++|+++.
T Consensus 208 ~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~----~~~~~~~i~~~~~t~~~~~p~~~~ 282 (576)
T 3gqw_A 208 ISHDGI-KLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMR----PLQWLKLISKNRGTVSVAPPFGYE 282 (576)
T ss_dssp HHHTTS-CCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHC----TTHHHHHHHHTTCCEEEECHHHHH
T ss_pred hhhccc-CCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhC----HHHHHHHHHHhCCeEEEcCHHHHH
Confidence 7665 6 8999999999999999999976 5677889999888543222111 122344499999999999999998
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHH
Q 008134 385 RVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF 464 (576)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~ 464 (576)
.+........ ......++||.+++||+++++++.++
T Consensus 283 ~l~~~~~~~~--------------------------------------------~~~~~l~~lr~~~~gg~~l~~~~~~~ 318 (576)
T 3gqw_A 283 LCQRRVNEKD--------------------------------------------LAELDLSCWRVAGIGAEPISAEQLHQ 318 (576)
T ss_dssp HHHHSCCHHH--------------------------------------------HTTCCCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHHHhcccc--------------------------------------------cccCChhhhHhhhccCccCCHHHHHH
Confidence 7755321111 11112358999999999999999999
Q ss_pred HHhhh------CCceecccCcccccCCccccCCCCC----------------------------CCCccCCCCCCcEEEE
Q 008134 465 INICM------GAPIGQAYGLTETCAGSTFSEWDDP----------------------------SVGRVGPPVPCCYIKL 510 (576)
Q Consensus 465 ~~~~~------~~~l~~~YG~TE~~~~~~~~~~~~~----------------------------~~~~vG~p~~~~~~~i 510 (576)
|.+.+ +++++|.||+||+++.++....... ...++|+|++|++++|
T Consensus 319 ~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 398 (576)
T 3gqw_A 319 FAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEI 398 (576)
T ss_dssp HHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEE
T ss_pred HHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEE
Confidence 99887 6889999999999987765432211 0138999999999999
Q ss_pred eecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 511 vd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e 575 (576)
+| +++.. +++|++|||+|+|+++++|||++|+.|++.| .+| ||+|||+|++ +||.
T Consensus 399 ~d-~~g~~---~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~---~~g--~~~TGDl~~~-~dG~ 453 (576)
T 3gqw_A 399 RN-EAGMP---VAERVVGHICISGPSLMSGYFGDQVSQDEIA---ATG--WLDTGDLGYL-LDGY 453 (576)
T ss_dssp EC-TTSCB---CCTTBCEEEEEESTTSCCCBTTCHHHHHHHH---HHS--CEEEEEEEEE-ETTE
T ss_pred EC-CCCCC---CCCCCeEEEEEeCccccccccCCcccccccc---CCC--eeeccceEEE-ECCE
Confidence 99 77765 5699999999999999999999999888766 567 9999999999 5763
No 31
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.7e-58 Score=495.41 Aligned_cols=383 Identities=18% Similarity=0.216 Sum_probs=296.4
Q ss_pred CHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 008134 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA 162 (576)
Q Consensus 83 tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~ 162 (576)
|+.++|+++++++||++|+++ +++ ++||+||.++++++|++|+++ +||+|++++
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~ 55 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITD------------GQE-----------SYTYQNLYCEASLLAKRLKAY---QQSRVGLYI 55 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEEC------------SSC-----------EEEHHHHHHHHHHHHHHHHTT---CCSEEEEEC
T ss_pred CHHHHHHHHHHhcCCceEEEe------------CCc-----------EEEHHHHHHHHHHHHHHHHHc---CCCEEEEEc
Confidence 567899999999999999986 333 799999999999999999997 899999999
Q ss_pred CCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCC
Q 008134 163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242 (576)
Q Consensus 163 ~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~ 242 (576)
+|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+......... ....+..+.........
T Consensus 56 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 130 (501)
T 3ipl_A 56 DNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIV-SLDDIEFAGRDITTNGL---- 130 (501)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEE-ETTC-----------------
T ss_pred CCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccc-ccccceeeeeecccccc----
Confidence 9999999999999999999999999999999999999999999999877543321111 00111111100000000
Q ss_pred CCCCCCCceE-eehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 008134 243 VSGGISNWTV-SSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321 (576)
Q Consensus 243 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l 321 (576)
......... ...+.................++++++|+|||||||.||||+++|+++++.+......+ ++.++|+++
T Consensus 131 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~d~~l 208 (501)
T 3ipl_A 131 -LDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-GFDRDTNWL 208 (501)
T ss_dssp --------------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-CCCTTCEEE
T ss_pred -cccccccccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-CCCccCEEE
Confidence 000000000 00011111000001112345789999999999999999999999999999999998888 999999999
Q ss_pred EecChHHHHHHHHHHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcC
Q 008134 322 AYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (576)
Q Consensus 322 ~~~pl~~~~~~~~~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~ 398 (576)
+.+|++|++++..++.+++.|+++++.+ +..+.+. ++++++|+++++|+++..+.+....
T Consensus 209 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~------ 271 (501)
T 3ipl_A 209 SVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTM-----------IKNERITHISLVPQTLNWLMQQGLH------ 271 (501)
T ss_dssp ECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHSCCCEEEECHHHHHHHHHHTCC------
T ss_pred EeCcHHHHHHHHHHHHHHHcCceEEeCCCCCHHHHHHH-----------HHHcCCcEEEchHHHHHHHHhcCCC------
Confidence 9999999999998899999999999943 4444444 9999999999999999988763210
Q ss_pred chhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccC
Q 008134 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478 (576)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG 478 (576)
...+||.+++||+++++++.+++.+ ++++++|.||
T Consensus 272 --------------------------------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG 306 (501)
T 3ipl_A 272 --------------------------------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFG 306 (501)
T ss_dssp --------------------------------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEE
T ss_pred --------------------------------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEecccc
Confidence 0027999999999999999999887 4999999999
Q ss_pred cccccCCccccCCC--CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccc
Q 008134 479 LTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF 556 (576)
Q Consensus 479 ~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~ 556 (576)
+||+++.++..... .....++|+|+++++++|+|++ ++..|||+|+|+++++|||++|+.|++ | .
T Consensus 307 ~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~---------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~---~ 373 (501)
T 3ipl_A 307 MTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN---------KEGHGELMIKGANVMNGYLYPTDLTGT-F---E 373 (501)
T ss_dssp EGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC---------SSCCEEEEEESTTSCSCCSBSTTCCCS-E---E
T ss_pred ccccccceeecCccccccCCCCCCCCCCCcEEEEecCC---------CCCccEEEEeccchhhhhCcChhhcch-h---c
Confidence 99998755443322 1345789999999999999942 456799999999999999999999987 6 4
Q ss_pred cccceeeeCCeecccCccC
Q 008134 557 HCVWMLCICLYVSCDKTLE 575 (576)
Q Consensus 557 ~g~~~~~TGDlg~~d~d~e 575 (576)
+| ||+|||+|++|+||.
T Consensus 374 ~g--~~~TGDl~~~~~~G~ 390 (501)
T 3ipl_A 374 NG--YFNTGDIAEIDHEGY 390 (501)
T ss_dssp TT--EEEEEEEEEECTTSC
T ss_pred CC--ceecCCEEEEcCCCe
Confidence 67 999999999999985
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=3.7e-35 Score=301.39 Aligned_cols=206 Identities=19% Similarity=0.205 Sum_probs=175.1
Q ss_pred CCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCc-cc
Q 008134 274 QNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGST-LT 352 (576)
Q Consensus 274 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~-~~ 352 (576)
.+++|||+|||||||.||||++||+++++.+.+....+ +++++|++++++|++|++++..++.++..|+++++.++ ..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~ 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc
Confidence 47899999999999999999999999999999999998 99999999999999999999999999999999998443 22
Q ss_pred ccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHH
Q 008134 353 MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWD 432 (576)
Q Consensus 353 l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (576)
.... ++++++|++.++|+++..+++.....
T Consensus 115 ~~~~-----------i~~~~~t~~~~~P~~l~~ll~~~~~~--------------------------------------- 144 (358)
T 4gs5_A 115 PLAG-----------LDHADFDFVAMVPMQLQSILENSATS--------------------------------------- 144 (358)
T ss_dssp TTTT-----------CSSCCCSEEEECHHHHHHHHHCTTTG---------------------------------------
T ss_pred HHHH-----------HHHhCCeEEEcChHHHHHhhcccccc---------------------------------------
Confidence 3333 89999999999999999887632110
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEee
Q 008134 433 AIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVS 512 (576)
Q Consensus 433 ~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd 512 (576)
...++||.+++||+++++++.+++++. +++++|.||+||+++.++.........+++|.|.||+++.+.+
T Consensus 145 ---------~~l~~lr~v~~gG~~l~~~~~~~~~~~-~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~ 214 (358)
T 4gs5_A 145 ---------GQVDRLGKVLLGGAPVNHALAMQISDL-AMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE 214 (358)
T ss_dssp ---------GGGGGGCSEEECSSCCCHHHHHHHHTC-SSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT
T ss_pred ---------ccCCcceEEEEcccCCCchheeccccc-CceEEeccccccccceeecccccccccceeeccCCCeEEEecC
Confidence 011489999999999999999999874 9999999999999988887777767778899999999887643
Q ss_pred cCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccceeeeCCeecccCcc
Q 008134 513 WDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTL 574 (576)
Q Consensus 513 ~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~ 574 (576)
.|||+++|+.+ .+| ||+|||+|++|+||
T Consensus 215 --------------~Gel~~~g~~~------------------~~g--~~~TGDlg~~d~~g 242 (358)
T 4gs5_A 215 --------------RGCLHISGAVT------------------NGQ--TVQTNDLVEIHGNA 242 (358)
T ss_dssp --------------TSEEEEESGGG------------------TTC--CEEEEEEEEECSSE
T ss_pred --------------cCceEEecccc------------------cCc--ceecCCccccccCc
Confidence 48999988632 356 99999999999986
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=5.7e-34 Score=301.75 Aligned_cols=242 Identities=15% Similarity=0.080 Sum_probs=183.7
Q ss_pred EeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHh---hCCCCCCCcEEEEecCh-H
Q 008134 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT---LIPNPGRSDVYLAYLPL-A 327 (576)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl-~ 327 (576)
+...+++.... +.......++++++|+|||||||.||||+++|+++.+....... .+ ++.++|++++.+|+ .
T Consensus 72 ~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~ 147 (443)
T 2y4o_A 72 FSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA-GGRPGDTLHNAFGYGL 147 (443)
T ss_dssp CBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSS
T ss_pred CCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeccCcc
Confidence 45556665432 11223456789999999999999999999999999876654433 56 88999999999998 5
Q ss_pred HHHHHHHHHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHH
Q 008134 328 HVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNL 404 (576)
Q Consensus 328 ~~~~~~~~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 404 (576)
|..++...+.++..|+++++.+ +..+.+ .|+++++|+++++|+++..|.+........
T Consensus 148 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-----------~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-------- 208 (443)
T 2y4o_A 148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQ-----------LIRDFEPKIILVTPSYMLNLIDEMVRQGMD-------- 208 (443)
T ss_dssp SHHHHHHHHHHHHHTCEEECCCSCCHHHHHH-----------HHHHHCCSEEEECHHHHHHHHHHHHHTTCC--------
T ss_pred cccHHHHHHHHHHcCCEEEECCCCCHHHHHH-----------HHHHhCCcEEEECHHHHHHHHHHHHHcCCC--------
Confidence 7777777888999999998843 333443 499999999999999999987753321000
Q ss_pred HHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccC
Q 008134 405 FNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA 484 (576)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~ 484 (576)
...++||.+++||+++++++.+++++.+|++++|.||+||+++
T Consensus 209 -------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g 251 (443)
T 2y4o_A 209 -------------------------------------PAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMG 251 (443)
T ss_dssp -------------------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTE
T ss_pred -------------------------------------cccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcC
Confidence 0014899999999999999999999989999999999999854
Q ss_pred C-ccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccceee
Q 008134 485 G-STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLC 563 (576)
Q Consensus 485 ~-~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~ 563 (576)
. .+..... ... .++.|.+++.++|+|+++++. +++|+.|||+|+| .|+++| +++ ||+
T Consensus 252 ~~~~~~~~~-~~~-g~~~~~~~~~~~i~d~~~g~~---~~~G~~Gel~v~~------------~t~~~~---p~~--~y~ 309 (443)
T 2y4o_A 252 PGVACECVE-TKD-GPVIWEDHFYPEIIDPVTGEV---LPDGSQGELVFTS------------LTKEAM---PVI--RYR 309 (443)
T ss_dssp EEEEEECTT-TCC-SEEECTTTEEEEEECTTTCCB---CCTTCCEEEEEEE------------SSCSSS---CCS--SEE
T ss_pred CeEEeccCC-CCC-ceEEccCCeEEEEEcCCCCCC---CCCCCceEEEEeC------------CCcccC---hhh--eee
Confidence 3 3322221 111 255577899999999666665 5699999999998 244556 567 999
Q ss_pred eCCeecccCc-cC
Q 008134 564 ICLYVSCDKT-LE 575 (576)
Q Consensus 564 TGDlg~~d~d-~e 575 (576)
|||+|++|+| |.
T Consensus 310 TGDl~~~~~~cG~ 322 (443)
T 2y4o_A 310 TRDLTALLPPTAR 322 (443)
T ss_dssp EEEEECEECCSSS
T ss_pred cCCEEEEcCCCCC
Confidence 9999999998 74
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=5.7e-33 Score=293.47 Aligned_cols=226 Identities=15% Similarity=0.122 Sum_probs=177.7
Q ss_pred CCCCC-CCeEEEEeecCCCCCCceEEechHHHHHHHHHH---HhhCCCCCCCcEEEEecChHHHHH-HHHHHHHHHhCce
Q 008134 270 SLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI---KTLIPNPGRSDVYLAYLPLAHVLE-LAAESIMLCAGCA 344 (576)
Q Consensus 270 ~~~~~-~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~~d~~l~~~pl~~~~~-~~~~~~~l~~G~~ 344 (576)
....+ +++++|+|||||||.||||+++|+++.+..... ...+ ++.++|++++.+|+.|..+ +...+.++..|++
T Consensus 80 ~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 80 VAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMV-GIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CCSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHT-TCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred ccCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHc-CCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 34456 899999999999999999999999998766555 3345 7899999999999865444 4457888999999
Q ss_pred EEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCcc
Q 008134 345 IGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWF 421 (576)
Q Consensus 345 ~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (576)
+++.+ +..+.+. |++++||+++++|+++..|.+........
T Consensus 159 ~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------------------- 202 (436)
T 3qov_A 159 TVPAAAGNSKRQIKF-----------ISDFKTTALHAIPSYAIRLAEVFQEEGID------------------------- 202 (436)
T ss_dssp EECCCSCCHHHHHHH-----------HHHHTCCEEECCHHHHHHHHHHHHHTTCC-------------------------
T ss_pred EEeCCCCCHHHHHHH-----------HHHHCCCEEEECHHHHHHHHHHHHHcCCC-------------------------
Confidence 99843 3334444 99999999999999999998754321100
Q ss_pred ccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCccccCCCCCCCCccCC
Q 008134 422 GAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGP 501 (576)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~ 501 (576)
...++||.+++|||++++++.++|++.+|++++|.||+||+++.++..... ....+|.
T Consensus 203 --------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~g~~~ 260 (436)
T 3qov_A 203 --------------------PRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ--EQNGMHF 260 (436)
T ss_dssp --------------------TTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT--TCSSEEE
T ss_pred --------------------cccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC--CCCeeEE
Confidence 001489999999999999999999999999999999999996553322221 1224677
Q ss_pred CCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccceeeeCCeecccCcc
Q 008134 502 PVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTL 574 (576)
Q Consensus 502 p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~ 574 (576)
|.++++++|+|++++.. +++|+.|||+|+|. |++.| ++| ||+|||+|++|+||
T Consensus 261 ~~~~~~v~i~d~~~g~~---~~~g~~Gel~v~~~------------~~~~~---~~~--~y~TGDl~~~~~~g 313 (436)
T 3qov_A 261 WEDCYLVEIIDPETGEP---VPEGEIGELVLTTL------------DREMM---PLI--RYRTRDLTRILPGK 313 (436)
T ss_dssp CTTTEEEEEECTTTCSB---CSTTCCEEEEEEES------------SCCSS---CCC--SEEEEEEECEECSC
T ss_pred ccCceEEEEEECCCCCC---CCCCCceEEEEecc------------CcCCc---eEE--EEEcCCEEEEcCCC
Confidence 88899999999777765 56999999999983 44455 567 99999999999986
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.2e-32 Score=291.16 Aligned_cols=242 Identities=17% Similarity=0.111 Sum_probs=184.0
Q ss_pred EeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHH---hhCCCCCCCcEEEEecCh-H
Q 008134 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK---TLIPNPGRSDVYLAYLPL-A 327 (576)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~d~~l~~~pl-~ 327 (576)
+...+++.... +.......++++++|+|||||||.||||+++|+++.+...... ..+ ++.++|++++.+|+ +
T Consensus 70 ~~~~~~l~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~ 145 (437)
T 2y27_A 70 FTTKGDLRDSY---PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA-GARRGDKVHVSYGYGL 145 (437)
T ss_dssp CBCHHHHHHTT---TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSS
T ss_pred CCCHHHHHhcC---CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEcccccc
Confidence 34556665432 1112345678999999999999999999999999987765443 245 88999999999998 6
Q ss_pred HHHHHHHHHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHH
Q 008134 328 HVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNL 404 (576)
Q Consensus 328 ~~~~~~~~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 404 (576)
|..++...+.++..|+++++.+ +..+.+. |++++||+++++|+++..|.+........
T Consensus 146 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-------- 206 (437)
T 2y27_A 146 FTGGLGAHYGAERAGLTVIPFGGGQTEKQVQL-----------IQDFRPDIIMVTPSYMLSIADEIERQGLD-------- 206 (437)
T ss_dssp SHHHHHHHHHHHHTTCEEECCCSCCHHHHHHH-----------HHHHCCSEEEECHHHHHHHHHHHHHTTCC--------
T ss_pred cccchHHHHHHHHcCCEEEeCCCCCHHHHHHH-----------HHHhCCCEEEECHHHHHHHHHHHHHcCCC--------
Confidence 8888877888999999998743 3334444 99999999999999999987754321000
Q ss_pred HHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccC
Q 008134 405 FNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA 484 (576)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~ 484 (576)
...++||.+++||+++++++.+++++.+|++++|.||+||+++
T Consensus 207 -------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g 249 (437)
T 2y27_A 207 -------------------------------------PVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMG 249 (437)
T ss_dssp -------------------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTE
T ss_pred -------------------------------------cccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcC
Confidence 0014899999999999999999999888999999999999854
Q ss_pred C-ccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccceee
Q 008134 485 G-STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLC 563 (576)
Q Consensus 485 ~-~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~ 563 (576)
. .+..... .. ..++.|.+++.++|+|++++.. +++|+.|||+|+| .|+++| +++ ||+
T Consensus 250 ~~~~~~~~~-~~-~g~~~~~~~~~~~i~d~~~g~~---~~~g~~Gel~v~~------------~t~~~~---~~~--~y~ 307 (437)
T 2y27_A 250 PGVASECVE-TK-DGPTIWEDHFYPEIIDPETGEV---LPDGELGELVFTS------------LTKEAL---PII--RYR 307 (437)
T ss_dssp EEEEECCTT-TC-SSCEECTTTEEEEEECTTTCCB---CCTTCCEEEEEEE------------SSCSSS---CCC--SEE
T ss_pred CeeEEecCC-CC-CceeEccCceEEEEEcCCCCCC---CCCCCccEEEEec------------CCcCCc---hhh--eee
Confidence 3 3332221 11 1255677899999999666655 5699999999998 245556 567 999
Q ss_pred eCCeecccC-ccC
Q 008134 564 ICLYVSCDK-TLE 575 (576)
Q Consensus 564 TGDlg~~d~-d~e 575 (576)
|||+|++|+ ||.
T Consensus 308 TGDl~~~~~~~G~ 320 (437)
T 2y27_A 308 TRDLTRLLPGTAR 320 (437)
T ss_dssp EEEEECEECCSSS
T ss_pred cCCEEEEeCCCCC
Confidence 999999998 674
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=4.1e-30 Score=265.51 Aligned_cols=209 Identities=15% Similarity=0.121 Sum_probs=156.7
Q ss_pred CCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHH---hhCCCCCCCcEEEEecCh-HHHHHHHHHHHHHHhCceEE
Q 008134 271 LPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK---TLIPNPGRSDVYLAYLPL-AHVLELAAESIMLCAGCAIG 346 (576)
Q Consensus 271 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~d~~l~~~pl-~~~~~~~~~~~~l~~G~~~~ 346 (576)
...++++++|+|||||||.||||+++|+++.+...+.. ..+ ++.++|++++.+|+ +|+.++...+.++..|+.++
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~ 165 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHR-PGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF 165 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTS-TTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhh-CCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence 34678999999999999999999999999999888654 334 67899999999999 99999988888899999443
Q ss_pred E--CCcc---ccccc---------chhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 008134 347 Y--GSTL---TMTDT---------SSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRR 412 (576)
Q Consensus 347 ~--~~~~---~l~~~---------~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (576)
. +++. .+... .......+++.++++++|++.++|+++..|++......
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~------------------ 227 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVL------------------ 227 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHH------------------
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhc------------------
Confidence 3 2222 00000 00000023334899999999999999999876421100
Q ss_pred HhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHH-hhh-CCceecccCcccccCCccccC
Q 008134 413 LAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN-ICM-GAPIGQAYGLTETCAGSTFSE 490 (576)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~-~~~-~~~l~~~YG~TE~~~~~~~~~ 490 (576)
...++||.+++|||++++++.++++ +.+ +++++|.||+||+++++....
T Consensus 228 -----------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~ 278 (369)
T 3hgu_A 228 -----------------------------QMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLL 278 (369)
T ss_dssp -----------------------------HHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECC
T ss_pred -----------------------------cccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceeccc
Confidence 0013799999999999999999999 888 899999999999986653221
Q ss_pred CCCCCCCccCCC------CCCcEEEEeecCCCCCcCCCCCCCCceEEEccC
Q 008134 491 WDDPSVGRVGPP------VPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF 535 (576)
Q Consensus 491 ~~~~~~~~vG~p------~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~ 535 (576)
..++|+| +++++++|+|+++++. +++|++|||+|++.
T Consensus 279 -----~~~~G~~~~~~~~~~~~~v~ivD~~~g~~---vp~G~~GEl~vt~l 321 (369)
T 3hgu_A 279 -----ITSESQQVIYDSFSPFITYDVVDSITAQT---VEYGERGNVIVTHL 321 (369)
T ss_dssp -----BCTTCSSCEEECCTTTEEEEEECTTTCSB---CCTTCEEEEEEEEE
T ss_pred -----cccCCCcccccCCCCCeEEEEECCCCCcC---CCCCCceEEEEEEc
Confidence 1158999 9999999999657765 66999999999973
No 37
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=96.40 E-value=0.021 Score=60.91 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=26.2
Q ss_pred CCCCeEEEEeecCCC-CCCceEEechHHHHHH
Q 008134 273 SQNGVAVIMYTSGST-GLPKGVMITHGNIVAT 303 (576)
Q Consensus 273 ~~~~~a~i~~TSGTT-G~PKgV~~sh~~l~~~ 303 (576)
.++.+.++.-||||| |+||-+.+|.+.+-..
T Consensus 97 ~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~ 128 (609)
T 4b2g_A 97 SAHPISEFLTSSGTSAGERKLMPTIQEELDRR 128 (609)
T ss_dssp CSSCCCEEEEEEEEETTEEEEEEECTTHHHHH
T ss_pred CCCCCCeEEeCCCCCCCCceeeecCHHHHHHH
Confidence 566678999999999 8899999999877653
No 38
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=96.19 E-value=0.078 Score=56.36 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=25.6
Q ss_pred CCCCeEEEEeecCCC-CCCceEEechHHHHH
Q 008134 273 SQNGVAVIMYTSGST-GLPKGVMITHGNIVA 302 (576)
Q Consensus 273 ~~~~~a~i~~TSGTT-G~PKgV~~sh~~l~~ 302 (576)
.++.+.+..-||||| |++|-+.+|.+.+-.
T Consensus 91 ~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~ 121 (581)
T 4eql_A 91 SARTITGFLLSSGTSGGAQKMMPWNNKYLDN 121 (581)
T ss_dssp CSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence 456677999999999 789999999998755
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=95.82 E-value=0.12 Score=54.74 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=25.6
Q ss_pred CCCCeEEEEeecCCC-CCCceEEechHHHHH
Q 008134 273 SQNGVAVIMYTSGST-GLPKGVMITHGNIVA 302 (576)
Q Consensus 273 ~~~~~a~i~~TSGTT-G~PKgV~~sh~~l~~ 302 (576)
.++.+.+..-||||| |++|-+.+|.+.+-.
T Consensus 96 ~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 96 TGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 556677899999999 889999999987755
No 40
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=92.64 E-value=1.2 Score=45.74 Aligned_cols=105 Identities=10% Similarity=0.044 Sum_probs=81.6
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC--cHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAET--CVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~--s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (576)
-.+|++.+...+..++..+...|+.++|++...++- ....+...++++..|+..+++++ ...+++...+++.++.++
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence 358999999888888888888999999999998885 34445567888999999987765 478889999999999999
Q ss_pred EECchhhhHHHHhhh------cCCCccEEEEecC
Q 008134 207 ICDSKQLKKLSAVSS------SLKTIKNVIYFEN 234 (576)
Q Consensus 207 i~~~~~~~~l~~~~~------~~~~~~~vv~~~~ 234 (576)
+..+..+..+.+... ....++.+++-++
T Consensus 187 ~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 220 (437)
T 2y27_A 187 MVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAE 220 (437)
T ss_dssp EECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred EECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCc
Confidence 999988776655432 1245666665443
No 41
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=92.22 E-value=1.2 Score=45.72 Aligned_cols=105 Identities=13% Similarity=-0.015 Sum_probs=82.9
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC--cHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAET--CVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~--s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (576)
-.+|.+.+...+..++..+...|+.++|++...++- ....+..+++++..|+..++.++. ..+++...+++.++.++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEE
Confidence 368999999999999998988999999999999874 345566778889999998887654 67889999999999999
Q ss_pred EECchhhhHHHHhhh------cCCCccEEEEecC
Q 008134 207 ICDSKQLKKLSAVSS------SLKTIKNVIYFEN 234 (576)
Q Consensus 207 i~~~~~~~~l~~~~~------~~~~~~~vv~~~~ 234 (576)
+..+.....+.+... .+..++.+++-++
T Consensus 183 ~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 216 (436)
T 3qov_A 183 HAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE 216 (436)
T ss_dssp ECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred EECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence 999988777665431 1345666666443
No 42
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=91.96 E-value=1.4 Score=45.21 Aligned_cols=105 Identities=10% Similarity=-0.009 Sum_probs=81.5
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCc--HHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC--VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s--~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (576)
-.+|++.+...+..++..+...|+.++|++...++-+ ...+...++++..|+..+++++. ..+++...+++.++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence 3579999998888888888889999999999988853 44456678888999998887664 78889999999999999
Q ss_pred EECchhhhHHHHhhh------cCCCccEEEEecC
Q 008134 207 ICDSKQLKKLSAVSS------SLKTIKNVIYFEN 234 (576)
Q Consensus 207 i~~~~~~~~l~~~~~------~~~~~~~vv~~~~ 234 (576)
+..+..+..+.+... ....++.+++-++
T Consensus 189 ~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 222 (443)
T 2y4o_A 189 LVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAE 222 (443)
T ss_dssp EECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred EECHHHHHHHHHHHHHcCCCcccCCceEEEECCC
Confidence 999988776655431 1245666665443
No 43
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=81.16 E-value=7.9 Score=38.30 Aligned_cols=87 Identities=11% Similarity=-0.010 Sum_probs=64.9
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC--cHHHHHHHHHHHhCCCEEEEccCCCCHH--------------
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAET--CVEWFIAFQGCFRQSITVVTIYSSLGED-------------- 192 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~--s~~~~va~lA~~~~G~~~vpl~~~~~~~-------------- 192 (576)
..+|.+.+...+..++..+...|+.++|++..+++- ..--+...++++..|+.+++.+ ..+.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence 357899998888877777778899999999999886 2333444555589999666543 2333
Q ss_pred ---------HHHHHHhccCceEEEECchhhhHHH
Q 008134 193 ---------ALIHSLNETQVTTLICDSKQLKKLS 217 (576)
Q Consensus 193 ---------~l~~~l~~~~~~~vi~~~~~~~~l~ 217 (576)
++...+++.++.++++.+.....+.
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 6666899999999999888766554
No 44
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=79.73 E-value=30 Score=36.11 Aligned_cols=102 Identities=10% Similarity=-0.106 Sum_probs=74.9
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH--HHH-HHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE--WFI-AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~--~~v-a~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (576)
-.+|++.+...+..+.. ..++.++|++...+|-+.. +.. .+++.+..|+..+..+ ...++++...+++.++.+
T Consensus 200 V~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 275 (539)
T 1mdb_A 200 IPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVTI 275 (539)
T ss_dssp EEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCSE
T ss_pred EEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCeE
Confidence 46899988777665544 3478899999998886533 333 5788999999888765 467888999999999999
Q ss_pred EEECchhhhHHHHhh----hcCCCccEEEEecC
Q 008134 206 LICDSKQLKKLSAVS----SSLKTIKNVIYFEN 234 (576)
Q Consensus 206 vi~~~~~~~~l~~~~----~~~~~~~~vv~~~~ 234 (576)
+...+.....+.+.. ..++.++.+++-++
T Consensus 276 ~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 276 TALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp EEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred EEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence 999988877665543 23456666665443
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=79.11 E-value=30 Score=35.65 Aligned_cols=119 Identities=11% Similarity=0.080 Sum_probs=82.7
Q ss_pred CCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcH-HHHHHHH
Q 008134 95 HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV-EWFIAFQ 173 (576)
Q Consensus 95 ~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~-~~~va~l 173 (576)
.|+.+|++... .|.+.. ...-.+|++.+...+..+.. ..++.++|++...+|-.. -.+..++
T Consensus 161 ~~~d~a~i~~T----------SGTTG~----PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~ 223 (501)
T 3ipl_A 161 NLDDIASIMFT----------SGTTGP----QKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLL 223 (501)
T ss_dssp CTTSEEEEEEC----------CTTTSC----CCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHH
T ss_pred CCCCeEEEEEC----------CCCCCC----CcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHH
Confidence 46778777653 443111 11235899988777665543 458999999999888653 3344577
Q ss_pred HHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcC-CCccEEEE
Q 008134 174 GCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSL-KTIKNVIY 231 (576)
Q Consensus 174 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~-~~~~~vv~ 231 (576)
+.+..|+..+..+ ...++++...+++.++.++...+.....+.+..... ..++.+++
T Consensus 224 ~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~ 281 (501)
T 3ipl_A 224 RAVIEGFTVRIVD-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILL 281 (501)
T ss_dssp HHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEE
T ss_pred HHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEE
Confidence 8888999888776 477899999999999999999998887776654222 24555554
No 46
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=78.87 E-value=14 Score=38.83 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=73.9
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH--HHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE--WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~--~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (576)
-.+|++.+...+......+...++.++|++...+|-+.. +...+++.+ .|+..+.++ ...++.+...+++.++.++
T Consensus 210 v~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~ 287 (548)
T 2d1s_A 210 VQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSV 287 (548)
T ss_dssp EEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEE
T ss_pred EEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEE
Confidence 368999987776665544333688999999888886533 334467777 999888775 5678999999999999999
Q ss_pred EECchhhhHHHHhh----hcCCCccEEEEe
Q 008134 207 ICDSKQLKKLSAVS----SSLKTIKNVIYF 232 (576)
Q Consensus 207 i~~~~~~~~l~~~~----~~~~~~~~vv~~ 232 (576)
+..+.....+.+.. ..++.++.+++-
T Consensus 288 ~~~P~~~~~l~~~~~~~~~~l~~lr~i~~g 317 (548)
T 2d1s_A 288 ILVPTLFAILNKSELLNKYDLSNLVEIASG 317 (548)
T ss_dssp EECHHHHHHHHHCSCGGGSCCTTCCEEEEC
T ss_pred EecHHHHHHHHhCcccccccccceeEEEEc
Confidence 99998887766532 134556666553
No 47
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=77.40 E-value=26 Score=36.68 Aligned_cols=102 Identities=12% Similarity=-0.053 Sum_probs=75.1
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHH--HH-HHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW--FI-AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~--~v-a~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (576)
-.+|++.+...+..++. ..++.++|++...+|-+..+ .. .+++.+..|+..+..+. ..+..+...+++.++.+
T Consensus 209 v~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~ 284 (544)
T 3o83_A 209 IPRTHNDYDYSVRASAE---ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPN-PEPLNCFSIIQRHQVNM 284 (544)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCCE
T ss_pred EEechHHHHHHHHHHHH---HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHHCCCE
Confidence 36899998877766554 35899999999998865433 32 47888999998887654 57788889999999999
Q ss_pred EEECchhhhHHHHhh----hcCCCccEEEEecC
Q 008134 206 LICDSKQLKKLSAVS----SSLKTIKNVIYFEN 234 (576)
Q Consensus 206 vi~~~~~~~~l~~~~----~~~~~~~~vv~~~~ 234 (576)
+...+.....+.+.. ..++.++.+++-++
T Consensus 285 ~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~ 317 (544)
T 3o83_A 285 ASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGA 317 (544)
T ss_dssp EEECHHHHHHHHHHHTTTHHHHTTCCEEEEESS
T ss_pred EEechHHHHHHHhchhhccccCCcceEEEEcCC
Confidence 999988776655432 23456777666443
No 48
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=74.89 E-value=33 Score=35.60 Aligned_cols=100 Identities=13% Similarity=0.036 Sum_probs=72.1
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHH--HHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW--FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~--~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (576)
-.+|++.+...+..++.. .++.++|++...+|-...+ ...+++.+ .|+..+..+ ....+++...+++.++.++
T Consensus 188 V~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~ 262 (517)
T 3r44_A 188 VVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP-QFDATKVWSLIVEERVCIG 262 (517)
T ss_dssp EEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECS-SCCHHHHHHHHHHTTCCEE
T ss_pred eeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeC-CCCHHHHHHHHHHhCCeEE
Confidence 368999987776665544 4899999999988876433 33355555 888877764 5788999999999999999
Q ss_pred EECchhhhHHHHhh----hcCCCccEEEEec
Q 008134 207 ICDSKQLKKLSAVS----SSLKTIKNVIYFE 233 (576)
Q Consensus 207 i~~~~~~~~l~~~~----~~~~~~~~vv~~~ 233 (576)
...+.....+.... ..++.++.+++-+
T Consensus 263 ~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG 293 (517)
T 3r44_A 263 GAVPAILNFMRQVPEFAELDAPDFRYFITGG 293 (517)
T ss_dssp EECHHHHHHHHHSHHHHHCCCTTCCEEEECS
T ss_pred EeHHHHHHHHHhCcccccCCCCcccEEEECC
Confidence 99998877665432 2345666666533
No 49
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=70.88 E-value=60 Score=34.49 Aligned_cols=102 Identities=12% Similarity=-0.058 Sum_probs=73.9
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCc--HHHHH-HHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC--VEWFI-AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s--~~~~v-a~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (576)
-.+|++.+...+...... .++.++|++...++-+ ..+.. .+++.+..|+..+..+. .....+...+++.++.+
T Consensus 202 V~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~ 277 (617)
T 3rg2_A 202 IPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAAD-PSATLCFPLIEKHQVNV 277 (617)
T ss_dssp EEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCCE
T ss_pred eehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCcE
Confidence 468999887766655443 4789999999998854 44433 47888888988887654 56778888999999999
Q ss_pred EEECchhhhHHHHhhh------cCCCccEEEEecC
Q 008134 206 LICDSKQLKKLSAVSS------SLKTIKNVIYFEN 234 (576)
Q Consensus 206 vi~~~~~~~~l~~~~~------~~~~~~~vv~~~~ 234 (576)
+.........+.+... .++.++.+++-++
T Consensus 278 ~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe 312 (617)
T 3rg2_A 278 TALVPPAVSLWLQALIEGESRAQLASLKLLQVGGA 312 (617)
T ss_dssp EEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESS
T ss_pred EEcchHHHHHHHHhhhcccccccCCCccEEEEcCC
Confidence 9999988776655431 3456666666444
No 50
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=70.08 E-value=25 Score=36.32 Aligned_cols=101 Identities=15% Similarity=0.152 Sum_probs=73.2
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCC--CCCCEEEEEcCCcHHH--HHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCce
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGH--NVDTRAAILAETCVEW--FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVT 204 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv--~~gd~V~i~~~~s~~~--~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~ 204 (576)
-.+|++.+...+..++. ..|+ .++|++...+|-...+ ...+++.+..|+..+..+. ..++++...+++.++.
T Consensus 171 V~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t 246 (504)
T 1t5h_X 171 AIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE-FRPVDALQLVQQEQVT 246 (504)
T ss_dssp EEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCC
T ss_pred EEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCC-CCHHHHHHHHHHhCCe
Confidence 35888888766655433 3477 7889988888865443 3457889999999888764 6788889999999999
Q ss_pred EEEECchhhhHHHHhh-h-----cCCCccEEEEec
Q 008134 205 TLICDSKQLKKLSAVS-S-----SLKTIKNVIYFE 233 (576)
Q Consensus 205 ~vi~~~~~~~~l~~~~-~-----~~~~~~~vv~~~ 233 (576)
+++..+.....+.... . .++.++.+++-+
T Consensus 247 ~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG 281 (504)
T 1t5h_X 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAG 281 (504)
T ss_dssp EEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECC
T ss_pred EEEeChHHHHHHHhhhccccccccCccccEEEEcC
Confidence 9999998887776543 1 234566665533
No 51
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=67.70 E-value=28 Score=36.40 Aligned_cols=105 Identities=10% Similarity=0.051 Sum_probs=75.5
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH-HHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE-WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~-~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (576)
-.+|++.+...+......+...++.++|++...+|-+.. .+..+++.+..|+..+... ...++.+...+++.++.+++
T Consensus 208 V~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 286 (550)
T 3rix_A 208 VALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSAL 286 (550)
T ss_dssp EEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEE
T ss_pred hhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEE
Confidence 368998887666555444444578899999988886532 3455677788899888775 46788999999999999999
Q ss_pred ECchhhhHHHHhh----hcCCCccEEEEecC
Q 008134 208 CDSKQLKKLSAVS----SSLKTIKNVIYFEN 234 (576)
Q Consensus 208 ~~~~~~~~l~~~~----~~~~~~~~vv~~~~ 234 (576)
..+.....+.... ..++.++.+++-++
T Consensus 287 ~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 317 (550)
T 3rix_A 287 LVPTLFSFFAKSTLIDKYDLSNLHEIASGGA 317 (550)
T ss_dssp ECHHHHHHHHHCCGGGGSCCTTCCEEEECSS
T ss_pred eCcHHHHHHHhCccccccCcccccEEEEecC
Confidence 9998887765542 13456666665433
No 52
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=67.60 E-value=34 Score=33.53 Aligned_cols=97 Identities=10% Similarity=0.065 Sum_probs=65.2
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcH-HHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV-EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~-~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (576)
-.+|++.+...+..++. ..+++++|++...+|-+. ..+..++..+..|+..+..++... ....+++.++.++.
T Consensus 55 V~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~~ 128 (358)
T 4gs5_A 55 ITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN---PLAGLDHADFDFVA 128 (358)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC---TTTTCSSCCCSEEE
T ss_pred EEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc---HHHHHHHhCCeEEE
Confidence 36899998776665544 458999999999888653 334455666777777776665432 24567888999999
Q ss_pred ECchhhhHHHHhh---hcCCCccEEEE
Q 008134 208 CDSKQLKKLSAVS---SSLKTIKNVIY 231 (576)
Q Consensus 208 ~~~~~~~~l~~~~---~~~~~~~~vv~ 231 (576)
..+..+..+.+.. ..++.++.+++
T Consensus 129 ~~P~~l~~ll~~~~~~~~l~~lr~v~~ 155 (358)
T 4gs5_A 129 MVPMQLQSILENSATSGQVDRLGKVLL 155 (358)
T ss_dssp ECHHHHHHHHHCTTTGGGGGGGCSEEE
T ss_pred cChHHHHHhhccccccccCCcceEEEE
Confidence 9888776665432 23445555555
No 53
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=67.56 E-value=72 Score=32.74 Aligned_cols=98 Identities=8% Similarity=0.022 Sum_probs=67.7
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHH--HHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW--FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~--~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (576)
-.+|.+.+...+..+.. ..++.++|++...+|-...+ ...+.+.+..|+.+++. ...++++...+++.++.++
T Consensus 178 V~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~--~~~~~~~~~~i~~~~~t~~ 252 (509)
T 3ivr_A 178 ALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA--KFDPAQAARDIEAHKVTVM 252 (509)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS--SCCHHHHHHHHHHHTCCEE
T ss_pred EEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec--ccCHHHHHHHHHHHCCcEE
Confidence 36899998776665544 45899999999998865332 33334455555555544 6788999999999999999
Q ss_pred EECchhhhHHHHhh--hcCCCccEEEE
Q 008134 207 ICDSKQLKKLSAVS--SSLKTIKNVIY 231 (576)
Q Consensus 207 i~~~~~~~~l~~~~--~~~~~~~~vv~ 231 (576)
.........+.+.. ..+..++.++.
T Consensus 253 ~~~p~~~~~l~~~~~~~~l~~lr~~~~ 279 (509)
T 3ivr_A 253 AEFAPMLGNILDQAAPAQLASLRAVTG 279 (509)
T ss_dssp EEETTHHHHHHHHCCGGGGTTCCEEEE
T ss_pred EecHHHHHHHHhcccccchhhhheecc
Confidence 98888776665532 33445555554
No 54
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=66.79 E-value=25 Score=36.33 Aligned_cols=102 Identities=12% Similarity=0.049 Sum_probs=73.7
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH-HHHHHHHHHhCCCEEEEccCC--CCHHHHHHHHhccCceE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE-WFIAFQGCFRQSITVVTIYSS--LGEDALIHSLNETQVTT 205 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~-~~va~lA~~~~G~~~vpl~~~--~~~~~l~~~l~~~~~~~ 205 (576)
-.+|++.+...+..... ..++.++|++...+|-+.. .+..+++.+..|+..+.+++. ..++.+...+++.++.+
T Consensus 162 v~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 238 (512)
T 3fce_A 162 VQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQV 238 (512)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCE
T ss_pred EEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcE
Confidence 35899988776655443 4589999999999886543 245678889999998887653 56788999999999999
Q ss_pred EEECchhhhHHHHhh----hcCCCccEEEEec
Q 008134 206 LICDSKQLKKLSAVS----SSLKTIKNVIYFE 233 (576)
Q Consensus 206 vi~~~~~~~~l~~~~----~~~~~~~~vv~~~ 233 (576)
+...+.....+.... ..++.++.+++-+
T Consensus 239 ~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G 270 (512)
T 3fce_A 239 WTSTPSFAEMCLMEASFSESMLPNMKTFLFCG 270 (512)
T ss_dssp EEECHHHHHHHTTSTTCSTTTSTTCCEEEECS
T ss_pred EEecHHHHHHHHhhccccchhCccccEEEEec
Confidence 999988776554322 2234566665533
No 55
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=65.42 E-value=44 Score=34.45 Aligned_cols=102 Identities=7% Similarity=0.020 Sum_probs=73.5
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH-HHHHHHHHHhCCCEEEEccCC--CCHHHHHHHHhccCceE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE-WFIAFQGCFRQSITVVTIYSS--LGEDALIHSLNETQVTT 205 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~-~~va~lA~~~~G~~~vpl~~~--~~~~~l~~~l~~~~~~~ 205 (576)
-.+|++.+...+..++. ..++.++|++...+|-+.. .+..+++++..|+..+.+... ..++.+...+++.++.+
T Consensus 161 V~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 237 (511)
T 3e7w_A 161 VQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNV 237 (511)
T ss_dssp EEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSE
T ss_pred EEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcE
Confidence 36899988776655543 4688999999998886533 345678889999998877553 46788889999999999
Q ss_pred EEECchhhhHHHHhh----hcCCCccEEEEec
Q 008134 206 LICDSKQLKKLSAVS----SSLKTIKNVIYFE 233 (576)
Q Consensus 206 vi~~~~~~~~l~~~~----~~~~~~~~vv~~~ 233 (576)
++..+.....+.... ..++.++.++.-+
T Consensus 238 ~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G 269 (511)
T 3e7w_A 238 WTSTPSFVQMCLMDPGFSQDLLPHADTFMFCG 269 (511)
T ss_dssp EEECHHHHHHHHTSTTCSTTTCTTCCEEEECS
T ss_pred EEecHHHHHHHHhccccccccCCcccEEEEec
Confidence 999988776655432 2234555555533
No 56
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=64.99 E-value=34 Score=35.68 Aligned_cols=104 Identities=9% Similarity=-0.088 Sum_probs=72.4
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHH-HHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~-~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (576)
-.+|++.+...+.... .....++.++|++...+|-...+ +..+++.+..|+..+..++...++++...+++.++.++.
T Consensus 194 V~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~ 272 (541)
T 1v25_A 194 VVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTA 272 (541)
T ss_dssp EEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEE
T ss_pred eeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEe
Confidence 3588888754433210 11234788999999888864332 334677788899988887777899999999999999999
Q ss_pred ECchhhhHHHHhh----hcCCCccEEEEec
Q 008134 208 CDSKQLKKLSAVS----SSLKTIKNVIYFE 233 (576)
Q Consensus 208 ~~~~~~~~l~~~~----~~~~~~~~vv~~~ 233 (576)
..+..+..+.+.. ..++.++.+++-+
T Consensus 273 ~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 302 (541)
T 1v25_A 273 GVPTVWLALADYLESTGHRLKTLRRLVVGG 302 (541)
T ss_dssp ECHHHHHHHHHHHHHHTCCCSSCCEEEECS
T ss_pred cchHHHHHHHhhhhccCCcchhccEEEECC
Confidence 9988877665443 2345666666533
No 57
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=64.98 E-value=36 Score=36.61 Aligned_cols=103 Identities=12% Similarity=0.007 Sum_probs=72.9
Q ss_pred EeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHHH--HHHHHHHhCCCEEEEccCC---CCHHHHHHHHhccCce
Q 008134 130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWF--IAFQGCFRQSITVVTIYSS---LGEDALIHSLNETQVT 204 (576)
Q Consensus 130 ~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~~--va~lA~~~~G~~~vpl~~~---~~~~~l~~~l~~~~~~ 204 (576)
.+|.+.+...+.... -...+++++|++....+-+..+- ..+++.+..|+..+..+.. ..++++..++++.++.
T Consensus 275 ~~sh~~~~~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt 352 (652)
T 1pg4_A 275 LHTTGGYLVYAATTF--KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVN 352 (652)
T ss_dssp EEESHHHHHHHHHHH--HHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCS
T ss_pred EECchHHHHHHHHHH--HHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCe
Confidence 578877654432211 12368899999988888765443 4568899999999887642 4678899999999999
Q ss_pred EEEECchhhhHHHHhhh------cCCCccEEEEecC
Q 008134 205 TLICDSKQLKKLSAVSS------SLKTIKNVIYFEN 234 (576)
Q Consensus 205 ~vi~~~~~~~~l~~~~~------~~~~~~~vv~~~~ 234 (576)
++.+.+.....+.+... .++.++.+++-++
T Consensus 353 ~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 388 (652)
T 1pg4_A 353 ILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388 (652)
T ss_dssp EEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESS
T ss_pred EEEeCHHHHHHHHhcCccccccCCcCceEEEEEecC
Confidence 99999988877665432 2456676666554
No 58
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=62.84 E-value=63 Score=33.63 Aligned_cols=101 Identities=11% Similarity=-0.080 Sum_probs=74.1
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHH-HHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~-~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (576)
-.+|++.+...+..++.. .++.++|++...+|-...+ +..++..+..|+..+.+. ....+.+...+++.++.+++
T Consensus 198 V~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 273 (549)
T 3g7s_A 198 VMLTHFNLAANALQLAVA---TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFSW 273 (549)
T ss_dssp EEEEHHHHHHHHHHHHHH---HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCEEE
T ss_pred EEEcHHHHHHHHHHHHHH---cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEEE
Confidence 368999998877776554 4789999999888865332 333677788898888775 57888999999999999999
Q ss_pred ECchhhhHHHHhhh------cCCCccEEEEec
Q 008134 208 CDSKQLKKLSAVSS------SLKTIKNVIYFE 233 (576)
Q Consensus 208 ~~~~~~~~l~~~~~------~~~~~~~vv~~~ 233 (576)
..+.....+.+... .++.++.++.-+
T Consensus 274 ~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg 305 (549)
T 3g7s_A 274 AVPPALNVLVNTLESSNKTYDWSYLKVFATGA 305 (549)
T ss_dssp ECHHHHHHHHHHHHHSCCCCCCTTCCEEEEES
T ss_pred eCCHHHHHHHhhhhhhcccCCccceeEEEeCC
Confidence 99988777665432 234455555533
No 59
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=60.63 E-value=41 Score=35.01 Aligned_cols=105 Identities=7% Similarity=0.003 Sum_probs=74.3
Q ss_pred eEeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCcH--HHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceE
Q 008134 129 EWQTYGEVFDRACSFASGLV-NFGHNVDTRAAILAETCV--EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~s~--~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (576)
-.+|++.+...+........ ..++.++|++...+|-.. .+...+++.+..|+..+..+ ....+++...+++.++.+
T Consensus 196 v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 274 (536)
T 3ni2_A 196 VMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMP-KFEIGSLLGLIEKYKVSI 274 (536)
T ss_dssp EEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECS-SCCHHHHHHHHHHHTCCE
T ss_pred HHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcC-CCCHHHHHHHHHHhCCeE
Confidence 36899988766554433222 347889999999888653 33455788888999888765 467888999999999999
Q ss_pred EEECchhhhHHHHhh----hcCCCccEEEEecC
Q 008134 206 LICDSKQLKKLSAVS----SSLKTIKNVIYFEN 234 (576)
Q Consensus 206 vi~~~~~~~~l~~~~----~~~~~~~~vv~~~~ 234 (576)
+.........+.+.. ..++.++.+++-++
T Consensus 275 ~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe 307 (536)
T 3ni2_A 275 APVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGA 307 (536)
T ss_dssp EEECHHHHHHHHTCSCGGGSCCTTCCEEEEESS
T ss_pred EEccHHHHHHHHhCcccccCCCccceEEEECCC
Confidence 999988777665432 23456666665443
No 60
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=60.61 E-value=49 Score=34.75 Aligned_cols=122 Identities=7% Similarity=-0.052 Sum_probs=83.0
Q ss_pred CCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHH--HHHH
Q 008134 95 HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW--FIAF 172 (576)
Q Consensus 95 ~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~--~va~ 172 (576)
.|+.+|++... .|.+.. ...-.+|++.+...+..++. ..++.++|++...+|-+..+ ...+
T Consensus 165 ~~~d~a~i~~T----------SGTTG~----PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~ 227 (590)
T 3kxw_A 165 KSNDIAFLQYT----------SGSTMH----PKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCI 227 (590)
T ss_dssp CTTSEEEEEEC----------SSCSSS----CCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTT
T ss_pred CCCCeEEEEeC----------cCCCCC----ceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHH
Confidence 46778877653 443111 11246899999877766544 45899999999999876544 3347
Q ss_pred HHHHhCCCEEEEccCCC---CHHHHHHHHhccCceEEEECchhhhHHHHhh-------hcCCCccEEEEec
Q 008134 173 QGCFRQSITVVTIYSSL---GEDALIHSLNETQVTTLICDSKQLKKLSAVS-------SSLKTIKNVIYFE 233 (576)
Q Consensus 173 lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~-------~~~~~~~~vv~~~ 233 (576)
++.+..|+..+...+.. .++.+...+++.++.++.+.......+.+.. ..++.++.+++-+
T Consensus 228 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg 298 (590)
T 3kxw_A 228 LTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGA 298 (590)
T ss_dssp HHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECS
T ss_pred HHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCC
Confidence 88899999988876542 5677888999999999988877666655431 1234566665533
No 61
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=60.41 E-value=41 Score=35.41 Aligned_cols=103 Identities=6% Similarity=0.053 Sum_probs=71.2
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHH--HHHHHHHHhCCCEEEEccC-CCCHHHHHHHHhccCceE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW--FIAFQGCFRQSITVVTIYS-SLGEDALIHSLNETQVTT 205 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~--~va~lA~~~~G~~~vpl~~-~~~~~~l~~~l~~~~~~~ 205 (576)
-.+|++ +.......+ ....|+.++|++...++-+..+ ...+++.+..|+..+.... ...++.+...+++.++.+
T Consensus 224 V~~sh~-~~~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~ 300 (570)
T 3c5e_A 224 AEHSYS-SLGLKAKMD--AGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKS 300 (570)
T ss_dssp EEEEHH-HHHHHHHHH--TTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCE
T ss_pred EEechH-HHHhhhhhh--hhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeE
Confidence 357888 433211111 2446899999999888876443 3357788888988887754 678899999999999999
Q ss_pred EEECchhhhHHHHhh---hcCCCccEEEEecC
Q 008134 206 LICDSKQLKKLSAVS---SSLKTIKNVIYFEN 234 (576)
Q Consensus 206 vi~~~~~~~~l~~~~---~~~~~~~~vv~~~~ 234 (576)
++..+.....+.+.. ..++.++.+++-++
T Consensus 301 ~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe 332 (570)
T 3c5e_A 301 MMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGE 332 (570)
T ss_dssp EEECHHHHHHHHTSCTTTCCCTTCCEEEEESS
T ss_pred EeccHHHHHHHHhccccccccccceEEEEcCC
Confidence 999998877765431 12455666665444
No 62
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=58.91 E-value=40 Score=35.40 Aligned_cols=102 Identities=9% Similarity=-0.044 Sum_probs=73.9
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcH-HHHHHHHHHHhCCCEEEEccC-CCCHHHHHHHHhccCceEE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV-EWFIAFQGCFRQSITVVTIYS-SLGEDALIHSLNETQVTTL 206 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~-~~~va~lA~~~~G~~~vpl~~-~~~~~~l~~~l~~~~~~~v 206 (576)
-.+|++.+...... ....++.++|++..+++-+. -....+++.+..|+..+.... ...+..+...+++.++.++
T Consensus 232 V~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~ 307 (570)
T 4gr5_A 232 VMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTML 307 (570)
T ss_dssp EEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEE
T ss_pred EEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEE
Confidence 36899887533221 22348899999999888753 345567888899998887754 4678899999999999999
Q ss_pred EECchhhhHHHHhh-hcCCCccEEEEecC
Q 008134 207 ICDSKQLKKLSAVS-SSLKTIKNVIYFEN 234 (576)
Q Consensus 207 i~~~~~~~~l~~~~-~~~~~~~~vv~~~~ 234 (576)
.........+.+.. ..++.++.+++-++
T Consensus 308 ~~~P~~~~~l~~~~~~~~~~lr~~~~gG~ 336 (570)
T 4gr5_A 308 QLSASLFNFLVDEVPEAFEGVRYAITGGE 336 (570)
T ss_dssp EEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred EecHHHHHHHHhhchhhCCCceEEEEecc
Confidence 99988877666543 45567777766544
No 63
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=58.22 E-value=40 Score=36.29 Aligned_cols=103 Identities=11% Similarity=0.015 Sum_probs=69.8
Q ss_pred EeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHHH--HHHHHHHhCCCEEEEccCC---CCHHHHHHHHhccCce
Q 008134 130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWF--IAFQGCFRQSITVVTIYSS---LGEDALIHSLNETQVT 204 (576)
Q Consensus 130 ~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~~--va~lA~~~~G~~~vpl~~~---~~~~~l~~~l~~~~~~ 204 (576)
.+|.+.+...+.... -...+++++|++....+-+..+- ..+++.+..|+..+..+.. ..++++..++++.++.
T Consensus 281 ~~sh~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt 358 (663)
T 1ry2_A 281 QHSTAGYLLGALLTM--RYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVT 358 (663)
T ss_dssp EECSHHHHHHHHHHH--HHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCS
T ss_pred EEchhHHHHHHHHHH--HHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCC
Confidence 467776654332211 12368899999988887664432 4567889999998887642 4678899999999999
Q ss_pred EEEECchhhhHHHHhhh------cCCCccEEEEecC
Q 008134 205 TLICDSKQLKKLSAVSS------SLKTIKNVIYFEN 234 (576)
Q Consensus 205 ~vi~~~~~~~~l~~~~~------~~~~~~~vv~~~~ 234 (576)
++.+.+.....+.+... .++.++.++.-++
T Consensus 359 ~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 394 (663)
T 1ry2_A 359 QFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGE 394 (663)
T ss_dssp EEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSS
T ss_pred EEEecHHHHHHHHhcCccccccCCcCceEEEEEEcC
Confidence 99999887776654321 2345666555433
No 64
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=57.59 E-value=52 Score=35.07 Aligned_cols=122 Identities=8% Similarity=-0.014 Sum_probs=83.6
Q ss_pred CCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH-HHHHHH
Q 008134 95 HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE-WFIAFQ 173 (576)
Q Consensus 95 ~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~-~~va~l 173 (576)
.|+.+|++... .|.+.. ...-.+|++.+...+.. ....++.++|++...++-+.+ .+..++
T Consensus 162 ~~~d~a~iiyT----------SGSTG~----PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 223 (620)
T 4dg8_A 162 AADQIAYINFS----------SGTTGR----PKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIW 223 (620)
T ss_dssp CTTSEEEEEEE----------BSSSSS----CEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHH
T ss_pred CCCCeEEEEEC----------CCcccc----CeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHH
Confidence 46778877653 443111 11235888887543322 233588999999999887643 345578
Q ss_pred HHHhCCCEEEEcc-CCCCHHHHHHHHhccCceEEEECchhhhHHHHhh-hcCCCccEEEEecC
Q 008134 174 GCFRQSITVVTIY-SSLGEDALIHSLNETQVTTLICDSKQLKKLSAVS-SSLKTIKNVIYFEN 234 (576)
Q Consensus 174 A~~~~G~~~vpl~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~-~~~~~~~~vv~~~~ 234 (576)
+.+..|+..+..+ ....++.+...+++.++.++.........+.+.. ..++.++.+++-++
T Consensus 224 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe 286 (620)
T 4dg8_A 224 GALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGD 286 (620)
T ss_dssp HHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred HHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeC
Confidence 8899999888764 3467899999999999999999888877665543 44566777766554
No 65
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=56.13 E-value=44 Score=35.28 Aligned_cols=85 Identities=12% Similarity=0.071 Sum_probs=62.7
Q ss_pred CCCCCCCEEEEEcCCcHH--HHHHHHHHHhCCCEEEEcc-CCCCHHHHHHHHhccCceEEEECchhhhHHHHhh---hcC
Q 008134 150 FGHNVDTRAAILAETCVE--WFIAFQGCFRQSITVVTIY-SSLGEDALIHSLNETQVTTLICDSKQLKKLSAVS---SSL 223 (576)
Q Consensus 150 ~Gv~~gd~V~i~~~~s~~--~~va~lA~~~~G~~~vpl~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~---~~~ 223 (576)
.++.+++++....+.+.. ....+++.+..|+..+..+ ....++++...+++.++.++.+.+.....+.... ..+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l 340 (580)
T 3etc_A 261 QNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNF 340 (580)
T ss_dssp SCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CC
T ss_pred hCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCC
Confidence 588999998888776543 3335788899999988876 5678899999999999999999988777665432 123
Q ss_pred CCccEEEEecC
Q 008134 224 KTIKNVIYFEN 234 (576)
Q Consensus 224 ~~~~~vv~~~~ 234 (576)
+.++.+++-++
T Consensus 341 ~~lr~i~~gGe 351 (580)
T 3etc_A 341 STLKYAVVAGE 351 (580)
T ss_dssp TTCCEEEECSS
T ss_pred ccceEEEEccC
Confidence 45666665443
No 66
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=54.54 E-value=79 Score=32.50 Aligned_cols=85 Identities=8% Similarity=0.016 Sum_probs=63.9
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcH--HHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV--EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~--~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (576)
-.+|++.+...+..++..+ ++.++|++...++-.. .++..+++.+..|+..+... ....+.+...+ +.++.++
T Consensus 173 V~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i-~~~~t~~ 247 (505)
T 3nyq_A 173 AVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG-RFSTEGAAREL-NDGATML 247 (505)
T ss_dssp EEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS-SCCHHHHHHHH-TTTCCEE
T ss_pred EEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC-CCChHHHHHHH-hhCCeEE
Confidence 3689999988877666554 7889999988887543 23446788899999888774 46667777777 6789999
Q ss_pred EECchhhhHHHH
Q 008134 207 ICDSKQLKKLSA 218 (576)
Q Consensus 207 i~~~~~~~~l~~ 218 (576)
+..+.....+.+
T Consensus 248 ~~~P~~~~~l~~ 259 (505)
T 3nyq_A 248 FGVPTMYHRIAE 259 (505)
T ss_dssp EECHHHHHHHHH
T ss_pred EehHHHHHHHHH
Confidence 998887766654
No 67
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=47.50 E-value=71 Score=30.99 Aligned_cols=66 Identities=5% Similarity=-0.162 Sum_probs=46.7
Q ss_pred HHHHCCC-CCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECch
Q 008134 146 GLVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211 (576)
Q Consensus 146 ~L~~~Gv-~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 211 (576)
.+.+.|. ++|+.|.+....+=.-....+++.+.|.-++.+-|...+......++..++.+++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3445564 88888655555566666666777777988776666655556667788999999999764
No 68
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=46.68 E-value=55 Score=34.32 Aligned_cols=100 Identities=9% Similarity=0.069 Sum_probs=68.9
Q ss_pred EeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH-HHHHHHHHHhCCCEEEEccCC--CCHHHHHHHHhccCceEE
Q 008134 130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE-WFIAFQGCFRQSITVVTIYSS--LGEDALIHSLNETQVTTL 206 (576)
Q Consensus 130 ~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~-~~va~lA~~~~G~~~vpl~~~--~~~~~l~~~l~~~~~~~v 206 (576)
.+|++.+...+..++ ...++.++|++..+++-+.. .+..++..+..|+..+.+... .....+...+++.++.++
T Consensus 201 ~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~ 277 (563)
T 1amu_A 201 MLEHKGISNLKVFFE---NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVI 277 (563)
T ss_dssp EEESHHHHHHHHHHH---HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEE
T ss_pred EEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEE
Confidence 588888865544332 34589999999988876533 334567788899988876543 467888899999999999
Q ss_pred EECchhhhHHHHhhhcCCCccEEEEecC
Q 008134 207 ICDSKQLKKLSAVSSSLKTIKNVIYFEN 234 (576)
Q Consensus 207 i~~~~~~~~l~~~~~~~~~~~~vv~~~~ 234 (576)
...+.....+.. .....++.+++-++
T Consensus 278 ~~~P~~~~~l~~--~~~~~lr~~~~gG~ 303 (563)
T 1amu_A 278 TLPPTYVVHLDP--ERILSIQTLITAGS 303 (563)
T ss_dssp EECHHHHTTSCT--TTCCSCSEEEEESS
T ss_pred EeCHHHHHHHHh--cccccccEEEEEEe
Confidence 988776544322 23455666665443
No 69
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=46.43 E-value=39 Score=35.39 Aligned_cols=106 Identities=11% Similarity=-0.058 Sum_probs=75.4
Q ss_pred eEeeHHHHHHHHHHHHHHHH-----HCCCCCCCEEEEEcCCcHH-HHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccC
Q 008134 129 EWQTYGEVFDRACSFASGLV-----NFGHNVDTRAAILAETCVE-WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~-----~~Gv~~gd~V~i~~~~s~~-~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~ 202 (576)
-.+|++.+...+..++..+. ...+...+++....+.+.+ .+..++..+..|+..+........+.+...+++.+
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~ 272 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTT
T ss_pred EEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcC
Confidence 35899999888888777664 2357778888877776543 34456778888988877654444567778899999
Q ss_pred ceEEEECchhhhHHHHhhhcCCCccEEEEecC
Q 008134 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFEN 234 (576)
Q Consensus 203 ~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~ 234 (576)
+.++...+..+..+......++.++.+++-++
T Consensus 273 ~t~~~~~P~~l~~~~~~~~~~~~lr~~~~gG~ 304 (562)
T 3ite_A 273 VTHAGIVPSLLDQTGLVPEDAPHLVYLGVGGE 304 (562)
T ss_dssp CCEEEECHHHHHHHTCCGGGSTTCCEEEEESS
T ss_pred CCEEEcCHHHHhhcccCccccCceEEEEEecC
Confidence 99999988876655444455667777666444
No 70
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=43.38 E-value=94 Score=35.11 Aligned_cols=105 Identities=11% Similarity=0.026 Sum_probs=74.0
Q ss_pred eEeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCcH--HHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceE
Q 008134 129 EWQTYGEVFDRACSFASGLV-NFGHNVDTRAAILAETCV--EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~s~--~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (576)
-.+|++.+...+........ ..++.++|++...+|-.. .+...++..+..|+..+..+ ....+.+...+++.++.+
T Consensus 243 V~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 321 (979)
T 3tsy_A 243 VMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP-KFEINLLLELIQRCKVTV 321 (979)
T ss_dssp EEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS-SCCHHHHHHHHHHHTCCE
T ss_pred EEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeC-CCCHHHHHHHHHHhCCeE
Confidence 36899988766554433222 347889999998888653 34456788889999888764 567788999999999999
Q ss_pred EEECchhhhHHHHhhh----cCCCccEEEEecC
Q 008134 206 LICDSKQLKKLSAVSS----SLKTIKNVIYFEN 234 (576)
Q Consensus 206 vi~~~~~~~~l~~~~~----~~~~~~~vv~~~~ 234 (576)
+...+.....+..... .++.++.++.-++
T Consensus 322 ~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~ 354 (979)
T 3tsy_A 322 APMVPPIVLAIAKSSETEKYDLSSIRVVKSGAA 354 (979)
T ss_dssp EEECHHHHHHHHHCGGGGTSCCTTCCEEEESSC
T ss_pred EEcHHHHHHHHHhCccccCCCccceEEEEEcCC
Confidence 9999887766654432 2455666655443
No 71
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=40.05 E-value=1.1e+02 Score=31.00 Aligned_cols=109 Identities=12% Similarity=-0.002 Sum_probs=69.4
Q ss_pred CCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhC--CCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCc
Q 008134 273 SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGST 350 (576)
Q Consensus 273 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~ 350 (576)
.|+.+|++.........-....+|.+.+...+..+...+ .+. ++|++...++-+.. -+..+++++..|+..+..++
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e-~~~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLE-YVVAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECS
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHH-HHHHHHHHHHhCcEEEeeCC
Confidence 467788765543211111347899999988887776665 134 78999888876643 23446788999998887655
Q ss_pred cc-ccccchhhccCccccceeecccEEEecHHHHHHHHH
Q 008134 351 LT-MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (576)
Q Consensus 351 ~~-l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~ 388 (576)
.. .... ..+...++..++..++..+.....+..
T Consensus 115 ~~~~~~~-----~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 115 PQGGVTD-----ERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CCSCTTC-----CHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCccchH-----HHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 21 1111 112233777889999988877665543
No 72
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=38.73 E-value=46 Score=34.47 Aligned_cols=87 Identities=10% Similarity=-0.003 Sum_probs=64.0
Q ss_pred eEeeHHHH-HHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHH--HHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceE
Q 008134 129 EWQTYGEV-FDRACSFASGLVNFGHNVDTRAAILAETCVEW--FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (576)
Q Consensus 129 ~~lTY~eL-~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~--~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (576)
-.+|++.+ ....... ....++.++|++...++-...+ ...++..+..|+..+.+++....+.+...+++.++.+
T Consensus 201 v~~sh~~l~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~ 277 (529)
T 2v7b_A 201 TVHTHANLYWTAELYA---KPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTV 277 (529)
T ss_dssp EEEEHHHHHHHHHHTC---CCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSE
T ss_pred EEEEhhHHHHHHHHHh---hhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEE
Confidence 35888887 3322211 1124788999999888876544 3446778889999988877788899999999999999
Q ss_pred EEECchhhhHHHH
Q 008134 206 LICDSKQLKKLSA 218 (576)
Q Consensus 206 vi~~~~~~~~l~~ 218 (576)
++..+.....+..
T Consensus 278 ~~~~P~~~~~l~~ 290 (529)
T 2v7b_A 278 FYGVPTLYANMLV 290 (529)
T ss_dssp EEECHHHHHHHHT
T ss_pred EEecHHHHHHHHh
Confidence 9999887766543
No 73
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=36.85 E-value=1.6e+02 Score=30.04 Aligned_cols=85 Identities=8% Similarity=0.069 Sum_probs=61.5
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH--HHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE--WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~--~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (576)
-.+|++.+...+..+.. ..++.++|++...+|-... +...++..+..|+..+.+. ...++.+...++ ++.++
T Consensus 173 V~~sh~~l~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~--~~t~~ 246 (503)
T 4fuq_A 173 AMLSHDNLASNSLTLVD---YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLP-KFDPDKILDLMA--RATVL 246 (503)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECS-SCCHHHHHHHHT--TCCEE
T ss_pred EEEeHHHHHHHHHHHHH---HhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcC-CCCHHHHHHHHh--hcCEE
Confidence 36899998777666554 3588999999988886433 2345667777888877765 567788888887 78888
Q ss_pred EECchhhhHHHHh
Q 008134 207 ICDSKQLKKLSAV 219 (576)
Q Consensus 207 i~~~~~~~~l~~~ 219 (576)
+..+.....+...
T Consensus 247 ~~~P~~~~~l~~~ 259 (503)
T 4fuq_A 247 MGVPTFYTRLLQS 259 (503)
T ss_dssp EECHHHHHHHHTC
T ss_pred EEHHHHHHHHHhC
Confidence 8888777665543
No 74
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=36.78 E-value=1.3e+02 Score=29.19 Aligned_cols=71 Identities=6% Similarity=-0.135 Sum_probs=52.1
Q ss_pred HHHHHHHHHCCCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECch
Q 008134 141 CSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211 (576)
Q Consensus 141 ~~lA~~L~~~Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 211 (576)
+.+.....+--+++|.+..+.....=.-+...++|.+.|.-++.+-|...+......++..++.+++++..
T Consensus 72 ~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 72 AMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 33333333333678877667777777777888888899988877777766667778899999999999754
No 75
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=35.97 E-value=1e+02 Score=31.96 Aligned_cols=88 Identities=7% Similarity=-0.035 Sum_probs=64.4
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH--HHHHHHHHHhCCCEEEEccCC---CCHHHHHHHHhccCc
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE--WFIAFQGCFRQSITVVTIYSS---LGEDALIHSLNETQV 203 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~--~~va~lA~~~~G~~~vpl~~~---~~~~~l~~~l~~~~~ 203 (576)
-.+|++.+...+..+... ..++.++|++...+|-... +...+++.+..|+..+.+.+. ..+..+...+++.++
T Consensus 194 V~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~ 271 (576)
T 3gqw_A 194 VIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRG 271 (576)
T ss_dssp EEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTC
T ss_pred EEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCC
Confidence 368999987665544321 2588999999998887644 345677888889888776542 356788899999999
Q ss_pred eEEEECchhhhHHHH
Q 008134 204 TTLICDSKQLKKLSA 218 (576)
Q Consensus 204 ~~vi~~~~~~~~l~~ 218 (576)
.++++.+.....+..
T Consensus 272 t~~~~~p~~~~~l~~ 286 (576)
T 3gqw_A 272 TVSVAPPFGYELCQR 286 (576)
T ss_dssp CEEEECHHHHHHHHH
T ss_pred eEEEcCHHHHHHHHH
Confidence 999998877655543
No 76
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=34.02 E-value=2.3e+02 Score=28.90 Aligned_cols=103 Identities=4% Similarity=-0.006 Sum_probs=70.7
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHH-HHHHHHHHhCCCEEEEccCC--CCHHHHHHHHhccCceE
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSS--LGEDALIHSLNETQVTT 205 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~-~va~lA~~~~G~~~vpl~~~--~~~~~l~~~l~~~~~~~ 205 (576)
-.+|++.+...+..+.... ..++.+++++....+-+... +..+++++..|+..+.+... ...+++...+.+.++.+
T Consensus 163 V~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 241 (521)
T 3l8c_A 163 VQISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGI 241 (521)
T ss_dssp EEEEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSE
T ss_pred EEEehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcE
Confidence 4689998876555443221 25778889888887765433 45577888899988877654 36788899999999999
Q ss_pred EEECchhhhHHHHhh----hcCCCccEEEEe
Q 008134 206 LICDSKQLKKLSAVS----SSLKTIKNVIYF 232 (576)
Q Consensus 206 vi~~~~~~~~l~~~~----~~~~~~~~vv~~ 232 (576)
+...+.....+.... ..++.++.+++-
T Consensus 242 ~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~g 272 (521)
T 3l8c_A 242 WTSTPSFADMAMLSDDFCQAKMPALTHFYFD 272 (521)
T ss_dssp EEECHHHHHHHHTSTTCSTTTCTTCCEEEEC
T ss_pred EEeCCCHHHHHhhhhccccccCccceEEEEe
Confidence 999888776554332 234455655553
No 77
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=30.93 E-value=1.3e+02 Score=35.24 Aligned_cols=122 Identities=8% Similarity=0.095 Sum_probs=81.6
Q ss_pred CCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHH-HHHHH
Q 008134 95 HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQ 173 (576)
Q Consensus 95 ~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~-~va~l 173 (576)
.|+.+|++... .|.+.. ...-.+|.+.+... .......++.++|++..+.+-+.+. +.-++
T Consensus 605 ~~~~~ayiiyT----------SGSTG~----PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~ 666 (1304)
T 2vsq_A 605 DPNDPAYIMYT----------SGTTGK----PKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFY 666 (1304)
T ss_dssp CTTSEEEEEEE----------CCSSSS----CEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHH
T ss_pred CCCCeEEEEeC----------CCCCCC----CCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHH
Confidence 57788877654 444111 11235899887532 1122335888999998888776543 44578
Q ss_pred HHHhCCCEEEEccCC--CCHHHHHHHHhccCceEEEECchhhhHHHHhh-hcCCCccEEEEecC
Q 008134 174 GCFRQSITVVTIYSS--LGEDALIHSLNETQVTTLICDSKQLKKLSAVS-SSLKTIKNVIYFEN 234 (576)
Q Consensus 174 A~~~~G~~~vpl~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~-~~~~~~~~vv~~~~ 234 (576)
+.+..|+..+..++. ..++++...+++.++.++...+.....+.... ..++.++.+++-++
T Consensus 667 ~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe 730 (1304)
T 2vsq_A 667 ASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGE 730 (1304)
T ss_dssp HHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESS
T ss_pred HHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecC
Confidence 888999988877653 57889999999999999999888777665432 22345666665444
No 78
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=30.74 E-value=2.2e+02 Score=27.25 Aligned_cols=77 Identities=9% Similarity=-0.003 Sum_probs=51.6
Q ss_pred eeHHHHHHHHHHHH---HHHHHCCCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEE
Q 008134 131 QTYGEVFDRACSFA---SGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (576)
Q Consensus 131 lTY~eL~~~~~~lA---~~L~~~Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (576)
+++.+......... +.|...++++|++|.|...-+.-..++++|....|+.++.++.. +++ ..++...++..+|
T Consensus 137 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~i 213 (348)
T 4eez_A 137 LDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVTI 213 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEEE
T ss_pred CCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEEE
Confidence 67766544433322 33555689999999999987777777777777777776666543 333 4566778888877
Q ss_pred ECc
Q 008134 208 CDS 210 (576)
Q Consensus 208 ~~~ 210 (576)
...
T Consensus 214 ~~~ 216 (348)
T 4eez_A 214 NSG 216 (348)
T ss_dssp EC-
T ss_pred eCC
Confidence 644
No 79
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=29.47 E-value=88 Score=29.28 Aligned_cols=45 Identities=7% Similarity=0.100 Sum_probs=29.5
Q ss_pred HHHHHHHHHCCCCCCCEEEEEcCCc--------H-HHHHHHHHHHh-CCCEEEEc
Q 008134 141 CSFASGLVNFGHNVDTRAAILAETC--------V-EWFIAFQGCFR-QSITVVTI 185 (576)
Q Consensus 141 ~~lA~~L~~~Gv~~gd~V~i~~~~s--------~-~~~va~lA~~~-~G~~~vpl 185 (576)
..|...|+++||++||.|.+...=+ + ..+-+++.++. -|..++|-
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~~lG~v~gg~~~vi~AL~~~vg~~GTLvmPt 72 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLSSIGWISGGAVAVVEALMEVITEEGTIIMPT 72 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTGGGCCBTTHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HHHHHHHHHcCCCCCCEEEEEechHHhCCCCCCHHHHHHHHHHHhCCCCeEEEec
Confidence 3456778899999999999987642 2 23334444444 45555564
No 80
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=28.77 E-value=1.2e+02 Score=29.79 Aligned_cols=61 Identities=11% Similarity=-0.016 Sum_probs=40.4
Q ss_pred HHHHCCCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCC-----CCHHHHHHHHhccC--ceEEEEC
Q 008134 146 GLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS-----LGEDALIHSLNETQ--VTTLICD 209 (576)
Q Consensus 146 ~L~~~Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~-----~~~~~l~~~l~~~~--~~~vi~~ 209 (576)
.|...++++||.|.+..+....+. -++...|+.++.++.. ...+.+...+...+ .++|+..
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 345557899999998887765543 3456788876665432 46788888774334 6666643
No 81
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=28.53 E-value=2.2e+02 Score=27.11 Aligned_cols=65 Identities=8% Similarity=-0.110 Sum_probs=43.4
Q ss_pred HHHCC-CCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECch
Q 008134 147 LVNFG-HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211 (576)
Q Consensus 147 L~~~G-v~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 211 (576)
+.+.| +++|....+....+=.-..+.+++.+.|.-++.+-|...+......++..++.+++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34556 466754444455555556666667799987776655544555667888899999999864
No 82
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=27.51 E-value=2.2e+02 Score=28.62 Aligned_cols=64 Identities=5% Similarity=-0.143 Sum_probs=45.9
Q ss_pred HHHCC-CCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECc
Q 008134 147 LVNFG-HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDS 210 (576)
Q Consensus 147 L~~~G-v~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 210 (576)
..+.| +++|....+....+=.-....+++.+.|.-++.+-|...+......++..++.+++++.
T Consensus 165 A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 165 AEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 34566 46775555555556666666777888898877666665556667788999999999975
No 83
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=25.24 E-value=1.7e+02 Score=28.17 Aligned_cols=60 Identities=8% Similarity=-0.028 Sum_probs=35.6
Q ss_pred CCCCCCEEEEEcCCcH------HHHHHHHHH-HhCCCEEEEccCCC------------CHHHHHHHHhccCceEEEECc
Q 008134 151 GHNVDTRAAILAETCV------EWFIAFQGC-FRQSITVVTIYSSL------------GEDALIHSLNETQVTTLICDS 210 (576)
Q Consensus 151 Gv~~gd~V~i~~~~s~------~~~va~lA~-~~~G~~~vpl~~~~------------~~~~l~~~l~~~~~~~vi~~~ 210 (576)
-+++||+|+|+.|.+. +-+-..+.. -..|.-++.-.... .++++..++.+-.+++|+|..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 4789999999999752 223222222 34566555432211 134566667777788888764
No 84
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=24.83 E-value=3.2e+02 Score=26.05 Aligned_cols=78 Identities=6% Similarity=-0.105 Sum_probs=50.8
Q ss_pred eeHHHHHHHHHH---HHHHHHHC--CCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceE
Q 008134 131 QTYGEVFDRACS---FASGLVNF--GHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (576)
Q Consensus 131 lTY~eL~~~~~~---lA~~L~~~--Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (576)
+++.+....... ..+.|.+. ++++|++|.|...-.+-.+++.+|-..-|+.++.++. +.+++ .++++.++..
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~~-~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDRL-ALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHHH-HHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHH-HHHHHcCCCE
Confidence 566665433222 12345553 7899999999998667778878777665666666643 33443 4567788888
Q ss_pred EEECch
Q 008134 206 LICDSK 211 (576)
Q Consensus 206 vi~~~~ 211 (576)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 876544
No 85
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=24.72 E-value=3e+02 Score=25.99 Aligned_cols=64 Identities=9% Similarity=-0.079 Sum_probs=41.5
Q ss_pred HHHCCC-CCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECch
Q 008134 147 LVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211 (576)
Q Consensus 147 L~~~Gv-~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 211 (576)
+.+.|. ++|+.|.. ...+=.-..+.+++.+.|.-++.+-|...+......++..++.+++++..
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 444554 67776655 44444444455556688987776655544455566788899999999863
No 86
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=24.50 E-value=2.1e+02 Score=22.96 Aligned_cols=50 Identities=14% Similarity=0.048 Sum_probs=38.5
Q ss_pred HHHHHHCCCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEc--cCCCCHHH
Q 008134 144 ASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI--YSSLGEDA 193 (576)
Q Consensus 144 A~~L~~~Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl--~~~~~~~~ 193 (576)
+.+|.+.|+.++..+.+...+..+.+.++-=+++.|...+.| -+..+...
T Consensus 47 ~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~ 98 (119)
T 1ofu_X 47 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAA 98 (119)
T ss_dssp HHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHH
T ss_pred HHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHH
Confidence 567888999998888888888899999999999999765544 23455443
No 87
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=24.10 E-value=1.3e+02 Score=28.25 Aligned_cols=22 Identities=9% Similarity=0.140 Sum_probs=18.4
Q ss_pred HHHHHHHCCCCCCCEEEEEcCC
Q 008134 143 FASGLVNFGHNVDTRAAILAET 164 (576)
Q Consensus 143 lA~~L~~~Gv~~gd~V~i~~~~ 164 (576)
|...|+++||++||.|.|...=
T Consensus 18 L~~~L~~LGI~~Gd~llVHsSl 39 (273)
T 2nyg_A 18 ITEDLKALGLKKGMTVLVHSSL 39 (273)
T ss_dssp HHHHHHHHTCCTTCEEEEEECS
T ss_pred HHHHHHHcCCCCCCEEEEEech
Confidence 4667888999999999998753
No 88
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=23.22 E-value=3.5e+02 Score=26.02 Aligned_cols=54 Identities=6% Similarity=0.071 Sum_probs=35.5
Q ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEc--cCC---CCHHHHHHHHhccCceEEEE
Q 008134 151 GHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI--YSS---LGEDALIHSLNETQVTTLIC 208 (576)
Q Consensus 151 Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl--~~~---~~~~~l~~~l~~~~~~~vi~ 208 (576)
++++||.|.+..+....... ++...|+.++.+ ++. ...+.+...+.. +.++|+.
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 134 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYY---PLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILT 134 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHH---HHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEE
T ss_pred CCCCcCEEEECCCCcHHHHH---HHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEE
Confidence 68899999888877666544 344678765544 432 357788877754 4555554
No 89
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=23.22 E-value=2.1e+02 Score=20.60 Aligned_cols=45 Identities=9% Similarity=-0.113 Sum_probs=34.2
Q ss_pred eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHHHHHHHHHHhCCC
Q 008134 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSI 180 (576)
Q Consensus 129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~ 180 (576)
..+.+.+|.+. +.++++.++..|.++|........+...+.+.|.
T Consensus 22 ~~ip~~~l~~~-------~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~ 66 (85)
T 2jtq_A 22 INIPLKEVKER-------IATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGY 66 (85)
T ss_dssp EECCHHHHHHH-------HHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred EEcCHHHHHHH-------HHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCC
Confidence 46788877653 3445678889999999998887777777778885
No 90
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=23.08 E-value=2e+02 Score=27.85 Aligned_cols=59 Identities=8% Similarity=0.120 Sum_probs=36.5
Q ss_pred CCCCCCEEEEEcCCcH------HHHHHHHHHH-hCCCEEEEccCCC-------------CHHHHHHHHhccCceEEEECc
Q 008134 151 GHNVDTRAAILAETCV------EWFIAFQGCF-RQSITVVTIYSSL-------------GEDALIHSLNETQVTTLICDS 210 (576)
Q Consensus 151 Gv~~gd~V~i~~~~s~------~~~va~lA~~-~~G~~~vpl~~~~-------------~~~~l~~~l~~~~~~~vi~~~ 210 (576)
-+++||+|+|+.|.+. +-+-..+..+ ..|.-++. .+.. ..+++..++.+-++++|+|..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~-~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILE-GSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEE-CTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEE-cccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 4789999999999883 2233333333 46766654 2221 134566666777788888765
No 91
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=23.05 E-value=2.2e+02 Score=26.94 Aligned_cols=75 Identities=13% Similarity=-0.020 Sum_probs=48.7
Q ss_pred eeHHHHHHHHHHH--H-HHHHHCCCCCCCEEEEEc-CCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEE
Q 008134 131 QTYGEVFDRACSF--A-SGLVNFGHNVDTRAAILA-ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (576)
Q Consensus 131 lTY~eL~~~~~~l--A-~~L~~~Gv~~gd~V~i~~-~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (576)
+++.+........ | +.|...++++|++|.|.. .-.+-.+++.+|- ..|+.++.+. +.++ ..++++.++..+
T Consensus 126 ~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~~ 200 (321)
T 3tqh_A 126 LSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQC 200 (321)
T ss_dssp SCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSEE
T ss_pred CCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCEE
Confidence 5777665433221 2 345556899999999997 5556666666665 5688666553 3455 556777888877
Q ss_pred EECc
Q 008134 207 ICDS 210 (576)
Q Consensus 207 i~~~ 210 (576)
+...
T Consensus 201 i~~~ 204 (321)
T 3tqh_A 201 INYH 204 (321)
T ss_dssp EETT
T ss_pred EeCC
Confidence 6544
No 92
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=22.98 E-value=3.2e+02 Score=25.68 Aligned_cols=64 Identities=5% Similarity=-0.130 Sum_probs=41.1
Q ss_pred HHHCCC-CCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECch
Q 008134 147 LVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211 (576)
Q Consensus 147 L~~~Gv-~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 211 (576)
+.+.|. ++|+.|.. ...+=.-..+.+++.+.|.-++.+-|...+......++..++.+++++..
T Consensus 56 a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 344554 66766554 44444445555666778987766655544445556778899999999864
No 93
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=21.94 E-value=2e+02 Score=28.21 Aligned_cols=60 Identities=8% Similarity=0.087 Sum_probs=36.8
Q ss_pred CCCCCCEEEEEcCCcH------HHHHHHHHHH-hCCCEEEEccCCC------------CHHHHHHHHhccCceEEEECc
Q 008134 151 GHNVDTRAAILAETCV------EWFIAFQGCF-RQSITVVTIYSSL------------GEDALIHSLNETQVTTLICDS 210 (576)
Q Consensus 151 Gv~~gd~V~i~~~~s~------~~~va~lA~~-~~G~~~vpl~~~~------------~~~~l~~~l~~~~~~~vi~~~ 210 (576)
-+++||+|+|+.|.+. +-+-..+..+ ..|.-++.-.... .++++..++.+-++++|+|..
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 5789999999999873 2233333333 4676665432211 134566666677778888865
No 94
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=21.82 E-value=3.5e+02 Score=25.41 Aligned_cols=63 Identities=2% Similarity=-0.154 Sum_probs=42.2
Q ss_pred HHHCCC-CCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECc
Q 008134 147 LVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDS 210 (576)
Q Consensus 147 L~~~Gv-~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 210 (576)
+.+.|. ++|+.|..... +=.-..+.+++.+.|.-++.+-|...+......++..++.++++..
T Consensus 52 a~~~g~~~~g~~vv~~ss-GN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 52 AEKRGEIKPGDVLIEATS-GNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp HHHTTCCCTTCEEEEECS-SHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 344554 67777666654 4444455555668898777766655445566788889999999986
No 95
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=21.50 E-value=3.1e+02 Score=26.44 Aligned_cols=64 Identities=9% Similarity=-0.017 Sum_probs=44.3
Q ss_pred HHHHH--CCCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECch
Q 008134 145 SGLVN--FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211 (576)
Q Consensus 145 ~~L~~--~Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 211 (576)
+.|.+ .++++|++|.|...-.+-..++.+|-...|+.++.++. +++++. .+++.++..++...+
T Consensus 175 ~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~vi~~~~ 240 (359)
T 1h2b_A 175 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKLK-LAERLGADHVVDARR 240 (359)
T ss_dssp HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHHH-HHHHTTCSEEEETTS
T ss_pred HHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHH-HHHHhCCCEEEeccc
Confidence 34555 78999999999999667777777776554876655553 344444 456788888876543
No 96
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=21.49 E-value=1.5e+02 Score=27.94 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=32.2
Q ss_pred EeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCc--------HH-HHHHHHHHH-hCCCEEEEc
Q 008134 130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC--------VE-WFIAFQGCF-RQSITVVTI 185 (576)
Q Consensus 130 ~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s--------~~-~~va~lA~~-~~G~~~vpl 185 (576)
.+|-.+| ...|+++||++||.|.+...=+ ++ .+-+++.++ .-|...+|-
T Consensus 21 ~~T~~~L-------~~~L~~LGI~~Gd~llVHsSL~~lG~v~Gga~~vi~AL~~~vg~~GTLvmPt 79 (286)
T 3sma_A 21 LVTRDRL-------ASDLAALGVRPGGVLLVHASLSALGWVCGGAQAVVLALQDAVGKEGTLVMPT 79 (286)
T ss_dssp EECHHHH-------HHHHHHHTCCTTCEEEEEECSTTSCEETTHHHHHHHHHHHHHCTTCEEEEEC
T ss_pred CcCHHHH-------HHHHHHcCCCCCCEEEEEechHHhCCCCCCHHHHHHHHHHHhcCCCEEEEec
Confidence 5776665 5668889999999999987532 23 333444444 356666665
No 97
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=20.54 E-value=3e+02 Score=26.48 Aligned_cols=63 Identities=8% Similarity=-0.108 Sum_probs=40.6
Q ss_pred HHCC-CCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECch
Q 008134 148 VNFG-HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211 (576)
Q Consensus 148 ~~~G-v~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 211 (576)
.+.| +++|+.|..... +=.-..+.+++.+.|.-++.+-|...+......++..++.+++++..
T Consensus 70 ~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 70 IKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3345 467776666554 43444455556678877666655544455566788899999999863
No 98
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=20.31 E-value=2.8e+02 Score=26.44 Aligned_cols=76 Identities=9% Similarity=0.011 Sum_probs=49.4
Q ss_pred eeHHHHHHHHHH---HHHHHHHCCCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEE
Q 008134 131 QTYGEVFDRACS---FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (576)
Q Consensus 131 lTY~eL~~~~~~---lA~~L~~~Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (576)
+++.+....... .-+.|...++++|++|.|...-.+-.+++.+|-. .|+-++.++. +++++. .+++.++..++
T Consensus 140 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~-~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~i 215 (340)
T 3s2e_A 140 VGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARA-MGLRVAAVDI--DDAKLN-LARRLGAEVAV 215 (340)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHH-TTCEEEEEES--CHHHHH-HHHHTTCSEEE
T ss_pred CCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeC--CHHHHH-HHHHcCCCEEE
Confidence 677665432222 1234555689999999999886677777777664 5886666644 344444 56778888877
Q ss_pred ECc
Q 008134 208 CDS 210 (576)
Q Consensus 208 ~~~ 210 (576)
...
T Consensus 216 ~~~ 218 (340)
T 3s2e_A 216 NAR 218 (340)
T ss_dssp ETT
T ss_pred eCC
Confidence 654
No 99
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=20.24 E-value=3.1e+02 Score=27.33 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=28.1
Q ss_pred EEEcCCcHHHHH-HHHHHHhCCCEEEEccCCCCHHH--HHHHHhccCceEEEECchhhhHHHH
Q 008134 159 AILAETCVEWFI-AFQGCFRQSITVVTIYSSLGEDA--LIHSLNETQVTTLICDSKQLKKLSA 218 (576)
Q Consensus 159 ~i~~~~s~~~~v-a~lA~~~~G~~~vpl~~~~~~~~--l~~~l~~~~~~~vi~~~~~~~~l~~ 218 (576)
+++..++.+.+. ++.++++.|-.++..++.+..-. +...+...+++++.++....+.+.+
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ 162 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEH 162 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHH
Confidence 344445544433 33344555555555555554321 1224555666666665544444433
No 100
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=20.16 E-value=2.7e+02 Score=26.66 Aligned_cols=73 Identities=10% Similarity=-0.075 Sum_probs=46.4
Q ss_pred eeHHHHHHHHHHH---HHHHHHCCCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEE
Q 008134 131 QTYGEVFDRACSF---ASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (576)
Q Consensus 131 lTY~eL~~~~~~l---A~~L~~~Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (576)
+++.+........ -+.|...++++|++|.|...-.+-.+++.+|- ..|+-++.++.+. +++. .+++.++..++
T Consensus 150 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~--~~~~-~~~~lGa~~v~ 225 (348)
T 3two_A 150 APLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNE--HKKQ-DALSMGVKHFY 225 (348)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSS--TTHH-HHHHTTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCH--HHHH-HHHhcCCCeec
Confidence 5666654222211 23456678999999999987556667666665 4688766665432 3333 45667888877
Done!