BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008135
         (576 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VE7|A Chain A, Crystal Structure Of A Bonsai Version Of The Human Ndc80
           Complex
 pdb|2VE7|B Chain B, Crystal Structure Of A Bonsai Version Of The Human Ndc80
           Complex
 pdb|3IZ0|C Chain C, Human Ndc80 Bonsai Decorated Microtubule
 pdb|3IZ0|E Chain E, Human Ndc80 Bonsai Decorated Microtubule
          Length = 315

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 34/201 (16%)

Query: 57  DRSHQSSAIRAINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQLDYPST----TK 110
           D++     IR +   L+ + +     +K  Q PSVKD   +  FL   L  PS     TK
Sbjct: 10  DKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFL-CPSYELPDTK 68

Query: 111 FEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAF- 169
           FEE++  + K L  PF ++KS++ +  +PH WP  +A + WL+     +  +  +S  F 
Sbjct: 69  FEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPLFD 128

Query: 170 ------------VENNSMYM-YASDSYLNYIEGKDG-------------DVDNIDKGFIE 203
                       + +N +++ Y    Y +++ G D              D+ N+D   +E
Sbjct: 129 DGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKLE 188

Query: 204 KLEKEKENVSEYVEELKKKVS 224
            LE +   ++E +  L+++ S
Sbjct: 189 SLEAKNRALNEQIARLEQERS 209


>pdb|2IGP|A Chain A, Crystal Structure Of Hec1 Ch Domain
          Length = 120

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 7/103 (6%)

Query: 57  DRSHQSSAIRAINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQLDYPS----TTK 110
           D++     IR +   L+ + +     +K  Q PSVKD   +  FL   L  PS     TK
Sbjct: 12  DKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFL-CPSYELPDTK 70

Query: 111 FEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLV 153
           FEE++  + K L  PF ++KS++ +  +PH WP  +A + WL+
Sbjct: 71  FEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLI 113


>pdb|1YVY|A Chain A, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
           Phosphoenolpyruvate Carboxykinase
 pdb|1YVY|B Chain B, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
           Phosphoenolpyruvate Carboxykinase
 pdb|1YTM|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
           Anaerobiospirillum Succiniciproducens Complexed With
           Atp, Oxalate, Magnesium And Manganese Ions
 pdb|1YTM|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
           Anaerobiospirillum Succiniciproducens Complexed With
           Atp, Oxalate, Magnesium And Manganese Ions
          Length = 532

 Score = 30.8 bits (68), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 315 ELQAVERDIADAENA---RNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRL 365
           EL+ V+  I D  N     +EWE K  DL  +  + FK+ E+L  +  +A  +L
Sbjct: 479 ELKGVDTKILDPRNTYADASEWEVKAKDLAERFQKNFKKFESLGGDLVKAGPQL 532


>pdb|3E02|A Chain A, Crystal Structure Of A Duf849 Family Protein (Bxe_c0271)
           From Burkholderia Xenovorans Lb400 At 1.90 A Resolution
          Length = 311

 Score = 30.4 bits (67), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query: 287 RICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESK 336
           R+  E+  +  + +L T NA  V ++RR ++ +  DIA  + AR   ++K
Sbjct: 255 RVGLEDSLYSGKGQLATSNAEQVRKIRRIIEELSLDIATPDEARAXLKTK 304


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.127    0.348 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,039,432
Number of Sequences: 62578
Number of extensions: 512264
Number of successful extensions: 1505
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1469
Number of HSP's gapped (non-prelim): 62
length of query: 576
length of database: 14,973,337
effective HSP length: 104
effective length of query: 472
effective length of database: 8,465,225
effective search space: 3995586200
effective search space used: 3995586200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)