Query 008135
Match_columns 576
No_of_seqs 268 out of 477
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 19:54:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0995 Centromere-associated 100.0 6.1E-88 1.3E-92 701.5 66.3 546 1-553 5-578 (581)
2 COG5185 HEC1 Protein involved 100.0 7.2E-71 1.6E-75 555.2 57.8 495 51-553 96-619 (622)
3 PF03801 Ndc80_HEC: HEC/Ndc80p 100.0 2.2E-37 4.8E-42 285.6 12.4 141 23-167 4-150 (157)
4 COG1196 Smc Chromosome segrega 99.6 1.1E-11 2.4E-16 149.2 44.3 84 464-564 946-1031(1163)
5 TIGR02169 SMC_prok_A chromosom 99.5 9.8E-11 2.1E-15 142.0 43.1 83 466-564 957-1040(1164)
6 KOG0161 Myosin class II heavy 99.4 1E-08 2.3E-13 124.1 43.4 304 239-544 1074-1423(1930)
7 KOG0996 Structural maintenance 99.2 1E-06 2.2E-11 100.4 41.6 64 96-166 636-711 (1293)
8 KOG0933 Structural maintenance 99.0 1.7E-06 3.6E-11 97.2 36.9 80 464-563 962-1047(1174)
9 TIGR02168 SMC_prok_B chromosom 99.0 6.5E-06 1.4E-10 100.2 44.2 26 540-565 1023-1051(1179)
10 TIGR02168 SMC_prok_B chromosom 99.0 7.8E-06 1.7E-10 99.5 42.3 68 492-563 982-1053(1179)
11 PF01576 Myosin_tail_1: Myosin 98.8 1.3E-09 2.7E-14 126.8 0.0 304 235-545 12-366 (859)
12 KOG0995 Centromere-associated 98.8 0.00067 1.5E-08 73.1 44.4 112 411-522 429-540 (581)
13 PF00038 Filament: Intermediat 98.7 0.00059 1.3E-08 70.8 40.1 66 415-480 210-275 (312)
14 KOG0971 Microtubule-associated 98.6 0.00051 1.1E-08 76.7 38.4 177 257-459 264-441 (1243)
15 TIGR00606 rad50 rad50. This fa 98.6 0.0004 8.8E-09 85.4 41.4 32 528-559 1075-1107(1311)
16 KOG0161 Myosin class II heavy 98.6 0.00095 2.1E-08 82.2 43.2 122 405-526 1088-1226(1930)
17 TIGR00606 rad50 rad50. This fa 98.6 0.0024 5.1E-08 78.8 46.4 20 545-564 1136-1155(1311)
18 PRK02224 chromosome segregatio 98.6 0.0049 1.1E-07 73.2 48.4 17 237-253 380-396 (880)
19 PF07888 CALCOCO1: Calcium bin 98.6 0.0026 5.7E-08 69.2 42.3 28 510-537 431-458 (546)
20 COG1196 Smc Chromosome segrega 98.5 0.0021 4.6E-08 78.2 44.5 75 89-164 529-607 (1163)
21 PF09730 BicD: Microtubule-ass 98.5 0.0049 1.1E-07 69.7 44.1 113 241-353 48-167 (717)
22 TIGR02169 SMC_prok_A chromosom 98.5 0.01 2.2E-07 72.5 48.9 71 93-163 539-613 (1164)
23 KOG0977 Nuclear envelope prote 98.5 0.00029 6.3E-09 76.5 30.5 73 412-484 294-366 (546)
24 PRK02224 chromosome segregatio 98.5 0.007 1.5E-07 71.9 45.4 13 350-362 430-442 (880)
25 PRK04778 septation ring format 98.5 0.0026 5.5E-08 71.6 39.2 37 464-505 452-489 (569)
26 KOG4674 Uncharacterized conser 98.4 0.0038 8.3E-08 75.9 41.6 127 419-550 1413-1540(1822)
27 KOG0964 Structural maintenance 98.4 0.0032 6.9E-08 71.4 37.6 231 64-298 511-763 (1200)
28 PF12128 DUF3584: Protein of u 98.4 0.015 3.3E-07 71.1 49.1 35 281-315 440-474 (1201)
29 KOG0018 Structural maintenance 98.3 0.0042 9E-08 71.3 36.1 71 62-133 487-565 (1141)
30 PRK03918 chromosome segregatio 98.3 0.022 4.7E-07 67.7 46.4 9 149-157 114-122 (880)
31 PRK11637 AmiB activator; Provi 98.1 0.0064 1.4E-07 66.0 32.4 35 411-445 170-204 (428)
32 PF10174 Cast: RIM-binding pro 98.1 0.037 8E-07 63.6 43.3 214 235-478 309-525 (775)
33 PRK03918 chromosome segregatio 98.1 0.048 1E-06 64.8 45.9 12 22-33 24-35 (880)
34 KOG0250 DNA repair protein RAD 98.1 0.01 2.2E-07 68.6 33.7 74 259-335 285-358 (1074)
35 KOG0964 Structural maintenance 98.1 0.042 9.2E-07 62.7 36.9 26 105-130 109-140 (1200)
36 PHA02562 46 endonuclease subun 98.0 0.018 3.9E-07 64.7 34.7 15 491-505 378-392 (562)
37 PF00038 Filament: Intermediat 98.0 0.028 6.1E-07 58.3 38.1 25 204-228 8-32 (312)
38 PRK04863 mukB cell division pr 97.9 0.016 3.4E-07 71.3 33.5 49 318-366 439-487 (1486)
39 KOG1029 Endocytic adaptor prot 97.9 0.06 1.3E-06 60.0 36.3 49 306-354 429-477 (1118)
40 PF07888 CALCOCO1: Calcium bin 97.9 0.057 1.2E-06 59.1 46.9 38 519-556 422-462 (546)
41 KOG0933 Structural maintenance 97.9 0.09 2E-06 60.4 41.6 106 147-266 599-723 (1174)
42 TIGR03185 DNA_S_dndD DNA sulfu 97.9 0.09 2E-06 60.3 39.4 61 398-458 382-444 (650)
43 KOG0971 Microtubule-associated 97.9 0.094 2E-06 59.4 38.3 53 252-304 266-318 (1243)
44 KOG0250 DNA repair protein RAD 97.7 0.2 4.4E-06 58.4 38.6 17 542-558 475-491 (1074)
45 KOG4674 Uncharacterized conser 97.7 0.3 6.5E-06 60.2 45.9 37 490-526 938-974 (1822)
46 KOG0977 Nuclear envelope prote 97.7 0.14 2.9E-06 56.3 37.0 92 468-559 290-386 (546)
47 PRK11637 AmiB activator; Provi 97.6 0.16 3.5E-06 55.2 33.8 29 417-445 187-215 (428)
48 PF00261 Tropomyosin: Tropomyo 97.6 0.1 2.3E-06 51.9 32.2 38 492-533 183-220 (237)
49 KOG0976 Rho/Rac1-interacting s 97.5 0.25 5.4E-06 55.4 42.8 42 236-277 108-149 (1265)
50 KOG0612 Rho-associated, coiled 97.5 0.37 8.1E-06 56.7 39.6 12 175-186 397-408 (1317)
51 PF08317 Spc7: Spc7 kinetochor 97.5 0.17 3.7E-06 52.8 28.6 129 235-367 157-294 (325)
52 PRK01156 chromosome segregatio 97.4 0.52 1.1E-05 56.2 46.8 35 266-300 413-447 (895)
53 PF10234 Cluap1: Clusterin-ass 97.3 0.045 9.8E-07 54.8 21.1 37 120-160 1-37 (267)
54 KOG4643 Uncharacterized coiled 97.3 0.56 1.2E-05 54.1 40.8 50 411-460 478-527 (1195)
55 PF10174 Cast: RIM-binding pro 97.3 0.6 1.3E-05 54.0 43.5 50 257-306 123-172 (775)
56 PRK09039 hypothetical protein; 97.2 0.29 6.3E-06 51.5 27.0 23 138-160 12-34 (343)
57 PF10498 IFT57: Intra-flagella 97.2 0.21 4.7E-06 52.6 25.7 70 85-158 36-115 (359)
58 PRK04778 septation ring format 97.2 0.59 1.3E-05 52.7 40.8 21 544-565 512-535 (569)
59 COG5185 HEC1 Protein involved 97.2 0.41 9E-06 50.7 45.3 155 394-551 456-613 (622)
60 PF12128 DUF3584: Protein of u 97.2 1.2 2.5E-05 54.9 46.5 14 175-188 328-341 (1201)
61 COG1579 Zn-ribbon protein, pos 97.1 0.25 5.5E-06 48.7 23.2 65 492-556 124-188 (239)
62 PHA02562 46 endonuclease subun 97.1 0.79 1.7E-05 51.5 35.5 63 238-303 185-247 (562)
63 KOG4673 Transcription factor T 97.0 0.77 1.7E-05 50.9 38.8 107 235-341 447-557 (961)
64 PF08317 Spc7: Spc7 kinetochor 97.0 0.036 7.8E-07 57.9 17.2 75 246-320 214-289 (325)
65 KOG0976 Rho/Rac1-interacting s 97.0 0.96 2.1E-05 51.0 38.9 30 530-559 416-447 (1265)
66 PF05667 DUF812: Protein of un 96.9 1.1 2.3E-05 50.6 32.5 46 60-105 63-110 (594)
67 PF09730 BicD: Microtubule-ass 96.9 1.2 2.6E-05 50.9 39.1 119 414-540 583-715 (717)
68 PF09726 Macoilin: Transmembra 96.9 1.2 2.7E-05 51.1 29.7 92 238-339 422-513 (697)
69 KOG0018 Structural maintenance 96.9 1.4 3E-05 51.5 32.2 124 402-539 776-899 (1141)
70 TIGR03185 DNA_S_dndD DNA sulfu 96.9 1.3 2.9E-05 50.8 37.1 26 420-445 390-415 (650)
71 KOG0946 ER-Golgi vesicle-tethe 96.9 0.74 1.6E-05 52.1 26.4 15 144-158 544-558 (970)
72 KOG0994 Extracellular matrix g 96.8 1.6 3.5E-05 51.2 35.5 20 174-193 1471-1490(1758)
73 PF09755 DUF2046: Uncharacteri 96.8 0.74 1.6E-05 46.9 32.9 88 235-325 85-174 (310)
74 KOG0980 Actin-binding protein 96.8 1.5 3.3E-05 50.1 32.7 74 405-478 464-537 (980)
75 COG1340 Uncharacterized archae 96.8 0.77 1.7E-05 46.5 34.2 40 285-324 109-148 (294)
76 PF15070 GOLGA2L5: Putative go 96.7 1.5 3.4E-05 49.5 38.4 44 412-455 200-243 (617)
77 PF01576 Myosin_tail_1: Myosin 96.7 0.00044 9.6E-09 81.0 0.0 48 407-454 405-452 (859)
78 smart00787 Spc7 Spc7 kinetocho 96.6 0.3 6.6E-06 50.5 20.3 23 237-259 175-197 (312)
79 PF06160 EzrA: Septation ring 96.6 1.8 3.9E-05 48.8 40.7 44 321-364 226-270 (560)
80 COG1579 Zn-ribbon protein, pos 96.6 0.89 1.9E-05 45.0 23.0 92 247-339 30-121 (239)
81 PF06160 EzrA: Septation ring 96.6 1.9 4E-05 48.6 41.3 78 283-362 252-333 (560)
82 PRK09039 hypothetical protein; 96.6 0.49 1.1E-05 49.8 21.8 47 308-354 138-184 (343)
83 KOG4673 Transcription factor T 96.5 1.8 4E-05 48.1 41.6 111 416-526 532-653 (961)
84 smart00787 Spc7 Spc7 kinetocho 96.5 1.3 2.8E-05 45.9 25.4 126 235-363 152-285 (312)
85 COG4942 Membrane-bound metallo 96.5 1.5 3.3E-05 46.7 32.9 39 418-456 168-206 (420)
86 KOG1029 Endocytic adaptor prot 96.5 2.1 4.6E-05 48.2 33.4 13 35-47 143-155 (1118)
87 PF13851 GAS: Growth-arrest sp 96.4 0.98 2.1E-05 43.8 22.5 126 235-363 63-199 (201)
88 KOG0963 Transcription factor/C 96.4 2.2 4.8E-05 47.2 30.3 44 414-457 383-426 (629)
89 KOG4643 Uncharacterized coiled 96.3 3.3 7.1E-05 48.2 42.4 51 206-262 190-240 (1195)
90 PF05667 DUF812: Protein of un 96.3 2.8 6E-05 47.3 34.1 35 413-447 446-480 (594)
91 PF09726 Macoilin: Transmembra 96.3 3.1 6.7E-05 47.9 30.7 39 236-274 462-500 (697)
92 PF03148 Tektin: Tektin family 96.2 2.3 5E-05 45.5 32.8 35 317-351 133-167 (384)
93 PF12718 Tropomyosin_1: Tropom 96.1 0.86 1.9E-05 41.6 18.3 31 311-341 77-107 (143)
94 PRK04863 mukB cell division pr 96.1 5.8 0.00013 49.6 39.9 8 114-121 196-203 (1486)
95 PF14662 CCDC155: Coiled-coil 96.1 1.3 2.8E-05 42.0 20.8 91 204-297 26-116 (193)
96 KOG0963 Transcription factor/C 96.1 3.1 6.7E-05 46.1 37.4 58 398-456 294-351 (629)
97 PF12718 Tropomyosin_1: Tropom 96.1 1.1 2.4E-05 40.9 18.6 52 211-268 18-69 (143)
98 KOG0996 Structural maintenance 95.9 5.4 0.00012 47.3 43.4 42 239-280 311-352 (1293)
99 KOG0962 DNA repair protein RAD 95.8 6.7 0.00015 47.4 40.1 45 318-362 882-926 (1294)
100 KOG0979 Structural maintenance 95.7 5.8 0.00013 46.4 29.0 19 144-162 528-546 (1072)
101 KOG0994 Extracellular matrix g 95.7 6.3 0.00014 46.6 40.7 29 526-554 1722-1750(1758)
102 TIGR02680 conserved hypothetic 95.7 8.8 0.00019 48.0 37.2 80 261-341 741-820 (1353)
103 KOG0979 Structural maintenance 95.5 7 0.00015 45.7 35.8 51 511-561 871-921 (1072)
104 KOG0980 Actin-binding protein 95.4 6.7 0.00015 45.2 34.6 57 403-459 448-504 (980)
105 PF14662 CCDC155: Coiled-coil 95.4 2.5 5.4E-05 40.1 26.5 96 238-354 12-107 (193)
106 COG0419 SbcC ATPase involved i 95.4 8.3 0.00018 46.2 50.1 13 544-556 741-753 (908)
107 PF15254 CCDC14: Coiled-coil d 95.4 6.3 0.00014 44.8 25.8 127 397-524 431-557 (861)
108 KOG0999 Microtubule-associated 95.4 5.3 0.00011 43.5 42.1 92 242-333 129-220 (772)
109 PF15070 GOLGA2L5: Putative go 95.2 7.3 0.00016 44.2 38.2 25 204-228 40-64 (617)
110 PF12325 TMF_TATA_bd: TATA ele 95.1 0.93 2E-05 40.0 13.9 68 257-324 18-85 (120)
111 PF05483 SCP-1: Synaptonemal c 95.1 7.2 0.00016 43.7 43.6 116 416-542 610-725 (786)
112 PF15066 CAGE1: Cancer-associa 95.0 6 0.00013 42.3 27.9 94 244-351 313-406 (527)
113 PRK11281 hypothetical protein; 95.0 12 0.00026 45.4 35.3 26 431-456 230-255 (1113)
114 PF10234 Cluap1: Clusterin-ass 94.9 4.7 0.0001 40.6 23.9 58 75-133 3-66 (267)
115 PF05622 HOOK: HOOK protein; 94.9 0.0072 1.6E-07 69.9 0.0 45 417-461 484-528 (713)
116 COG4477 EzrA Negative regulato 94.9 7.2 0.00016 42.6 39.5 46 213-259 170-215 (570)
117 COG1340 Uncharacterized archae 94.9 5 0.00011 40.8 38.5 28 418-445 162-189 (294)
118 KOG0243 Kinesin-like protein [ 94.8 11 0.00025 44.5 41.0 73 253-328 446-518 (1041)
119 PF05557 MAD: Mitotic checkpoi 94.8 0.39 8.5E-06 55.8 14.0 38 528-565 606-646 (722)
120 TIGR01843 type_I_hlyD type I s 94.7 7.2 0.00016 41.8 23.1 100 240-339 129-228 (423)
121 PF09787 Golgin_A5: Golgin sub 94.7 8.3 0.00018 42.9 23.5 72 237-308 105-180 (511)
122 KOG0243 Kinesin-like protein [ 94.6 13 0.00028 44.0 37.5 76 236-311 450-532 (1041)
123 PF05701 WEMBL: Weak chloropla 94.5 9.9 0.00021 42.5 44.4 32 236-267 50-81 (522)
124 PF05701 WEMBL: Weak chloropla 94.3 11 0.00024 42.1 42.9 18 262-279 172-189 (522)
125 PF13851 GAS: Growth-arrest sp 94.3 5.4 0.00012 38.6 24.1 150 410-560 30-192 (201)
126 PF09755 DUF2046: Uncharacteri 94.2 7.5 0.00016 39.8 32.7 18 204-221 24-41 (310)
127 PF04849 HAP1_N: HAP1 N-termin 94.2 7.6 0.00017 39.8 26.8 12 492-503 276-287 (306)
128 PF10473 CENP-F_leu_zip: Leuci 94.1 4.5 9.6E-05 36.7 18.8 75 235-309 32-106 (140)
129 TIGR00634 recN DNA repair prot 94.1 13 0.00028 42.0 25.8 19 302-320 204-222 (563)
130 PF12252 SidE: Dot/Icm substra 93.8 18 0.00038 42.7 30.7 100 224-323 1047-1176(1439)
131 PF15397 DUF4618: Domain of un 93.8 8.1 0.00018 38.7 30.8 69 397-465 64-143 (258)
132 PF08614 ATG16: Autophagy prot 93.8 1.5 3.3E-05 42.2 13.4 36 492-531 151-186 (194)
133 PF04111 APG6: Autophagy prote 93.7 1.4 3E-05 45.9 13.7 37 265-301 46-82 (314)
134 KOG1962 B-cell receptor-associ 93.6 4.8 0.0001 39.1 16.2 63 239-301 149-211 (216)
135 TIGR02680 conserved hypothetic 93.3 29 0.00063 43.5 42.9 43 263-305 284-326 (1353)
136 PF10146 zf-C4H2: Zinc finger- 93.2 3.2 6.9E-05 41.0 14.7 52 307-358 53-104 (230)
137 TIGR03007 pepcterm_ChnLen poly 93.2 16 0.00035 40.4 27.0 29 429-457 318-346 (498)
138 KOG1853 LIS1-interacting prote 93.2 3.3 7.2E-05 40.6 14.3 28 283-310 112-139 (333)
139 COG3883 Uncharacterized protei 93.2 10 0.00022 38.1 26.6 60 242-301 39-98 (265)
140 COG3883 Uncharacterized protei 93.1 11 0.00023 38.0 28.5 58 267-327 36-93 (265)
141 PF05622 HOOK: HOOK protein; 93.0 0.028 6.1E-07 65.1 0.0 14 61-74 72-85 (713)
142 PF05266 DUF724: Protein of un 92.9 9.2 0.0002 36.7 19.9 44 146-191 43-87 (190)
143 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.7 7.2 0.00016 35.0 19.4 108 418-529 7-117 (132)
144 PF10473 CENP-F_leu_zip: Leuci 92.6 7.9 0.00017 35.2 19.7 6 246-251 29-34 (140)
145 KOG0804 Cytoplasmic Zn-finger 92.4 8 0.00017 41.3 16.8 45 236-280 356-400 (493)
146 PF10168 Nup88: Nuclear pore c 92.4 26 0.00057 40.7 23.0 67 487-553 634-710 (717)
147 KOG0946 ER-Golgi vesicle-tethe 92.2 26 0.00056 40.3 29.7 50 239-288 648-697 (970)
148 PF11559 ADIP: Afadin- and alp 91.9 8.8 0.00019 35.2 15.2 31 248-278 73-103 (151)
149 PF08581 Tup_N: Tup N-terminal 91.8 5.6 0.00012 32.4 11.8 73 399-478 3-75 (79)
150 COG0419 SbcC ATPase involved i 91.6 37 0.0008 40.7 47.7 27 319-345 401-427 (908)
151 KOG0249 LAR-interacting protei 91.4 18 0.0004 40.8 18.9 43 413-455 215-257 (916)
152 PRK10869 recombination and rep 91.4 29 0.00063 39.1 29.5 43 205-247 176-218 (553)
153 PF07106 TBPIP: Tat binding pr 91.3 2.7 5.8E-05 39.4 11.3 35 286-322 126-160 (169)
154 PF09789 DUF2353: Uncharacteri 91.3 20 0.00044 37.1 25.9 83 257-339 135-221 (319)
155 PF08614 ATG16: Autophagy prot 91.3 3.4 7.3E-05 39.8 12.1 7 246-252 79-85 (194)
156 PF06005 DUF904: Protein of un 91.2 5.8 0.00013 31.7 11.2 60 200-265 4-63 (72)
157 PF15619 Lebercilin: Ciliary p 91.1 15 0.00032 35.4 20.6 59 273-333 86-144 (194)
158 PF10481 CENP-F_N: Cenp-F N-te 91.1 18 0.00039 36.2 18.3 102 243-354 20-128 (307)
159 KOG0999 Microtubule-associated 91.0 28 0.0006 38.3 35.4 55 256-310 94-148 (772)
160 PF10168 Nup88: Nuclear pore c 91.0 8.3 0.00018 44.7 16.9 25 386-410 682-706 (717)
161 TIGR01005 eps_transp_fam exopo 91.0 38 0.00081 39.7 24.6 14 492-505 390-403 (754)
162 TIGR00634 recN DNA repair prot 90.7 33 0.00073 38.7 23.4 10 91-100 37-46 (563)
163 PF05010 TACC: Transforming ac 90.6 18 0.00038 35.2 30.7 32 305-336 67-98 (207)
164 PF09789 DUF2353: Uncharacteri 90.5 24 0.00051 36.6 24.7 138 411-560 76-227 (319)
165 PF07111 HCR: Alpha helical co 90.5 36 0.00077 38.7 43.0 103 240-342 161-270 (739)
166 PF15619 Lebercilin: Ciliary p 90.5 17 0.00037 35.0 25.8 83 236-321 28-110 (194)
167 PF05557 MAD: Mitotic checkpoi 90.4 3.4 7.3E-05 48.1 13.3 6 15-20 23-28 (722)
168 PF05483 SCP-1: Synaptonemal c 90.2 37 0.0008 38.4 43.4 116 419-538 652-767 (786)
169 PF12325 TMF_TATA_bd: TATA ele 90.1 13 0.00028 32.9 13.9 43 236-278 18-60 (120)
170 TIGR01005 eps_transp_fam exopo 89.9 46 0.001 39.0 24.0 34 269-302 237-270 (754)
171 PF05010 TACC: Transforming ac 89.9 20 0.00044 34.8 29.2 9 450-458 151-159 (207)
172 PF04949 Transcrip_act: Transc 89.9 15 0.00032 33.3 15.0 91 246-349 29-119 (159)
173 PF11932 DUF3450: Protein of u 89.6 22 0.00047 35.6 16.8 58 217-280 38-95 (251)
174 KOG1853 LIS1-interacting prote 89.4 23 0.00051 34.9 20.7 30 245-274 95-124 (333)
175 PF09762 KOG2701: Coiled-coil 89.4 9.5 0.00021 36.3 13.0 84 65-157 2-103 (182)
176 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.4 16 0.00034 32.8 18.3 28 236-263 19-46 (132)
177 COG2433 Uncharacterized conser 89.3 5.4 0.00012 44.2 12.7 41 38-78 142-183 (652)
178 PF15066 CAGE1: Cancer-associa 89.3 35 0.00076 36.7 28.1 92 238-339 314-408 (527)
179 KOG4302 Microtubule-associated 89.2 46 0.00099 38.0 30.9 85 269-367 110-199 (660)
180 COG2433 Uncharacterized conser 89.1 7.2 0.00016 43.2 13.4 11 369-379 545-555 (652)
181 PF04111 APG6: Autophagy prote 89.0 6.8 0.00015 40.7 12.9 25 311-335 110-134 (314)
182 PF06785 UPF0242: Uncharacteri 88.4 33 0.00071 35.4 18.3 53 241-293 120-172 (401)
183 PF05911 DUF869: Plant protein 88.4 57 0.0012 38.1 23.7 31 317-347 662-692 (769)
184 PF03915 AIP3: Actin interacti 88.3 17 0.00037 39.3 15.6 69 275-343 212-285 (424)
185 PRK14011 prefoldin subunit alp 87.9 21 0.00046 32.6 14.1 26 418-443 99-124 (144)
186 PF13863 DUF4200: Domain of un 87.9 17 0.00036 32.0 13.2 43 235-277 33-75 (126)
187 PF10146 zf-C4H2: Zinc finger- 87.9 30 0.00065 34.2 15.9 54 248-301 18-71 (230)
188 PF10186 Atg14: UV radiation r 87.8 34 0.00073 34.8 20.5 34 491-524 125-158 (302)
189 PF11559 ADIP: Afadin- and alp 87.5 23 0.00049 32.5 18.9 35 492-526 115-149 (151)
190 KOG0804 Cytoplasmic Zn-finger 87.4 39 0.00085 36.3 17.0 61 235-295 348-408 (493)
191 PRK10869 recombination and rep 87.3 57 0.0012 36.8 30.0 22 300-321 198-219 (553)
192 KOG0978 E3 ubiquitin ligase in 87.3 61 0.0013 37.2 40.7 33 234-266 90-122 (698)
193 TIGR03017 EpsF chain length de 86.9 50 0.0011 35.8 19.5 22 344-365 344-365 (444)
194 PF03962 Mnd1: Mnd1 family; I 86.8 20 0.00044 34.2 13.8 44 280-323 107-151 (188)
195 KOG1003 Actin filament-coating 86.4 31 0.00067 32.9 18.6 43 238-280 57-99 (205)
196 PF15188 CCDC-167: Coiled-coil 86.4 6 0.00013 32.6 8.4 63 276-338 5-67 (85)
197 KOG1962 B-cell receptor-associ 86.3 16 0.00035 35.5 12.7 80 287-366 131-210 (216)
198 PF02403 Seryl_tRNA_N: Seryl-t 86.2 7.4 0.00016 33.4 9.6 71 269-339 29-99 (108)
199 PF12777 MT: Microtubule-bindi 86.0 49 0.0011 34.8 23.5 43 413-455 220-262 (344)
200 PF14915 CCDC144C: CCDC144C pr 86.0 43 0.00093 34.1 39.0 52 411-462 155-206 (305)
201 KOG2129 Uncharacterized conser 85.4 54 0.0012 34.8 26.1 10 492-501 320-329 (552)
202 KOG1937 Uncharacterized conser 85.1 59 0.0013 35.0 33.1 42 63-104 65-108 (521)
203 TIGR03007 pepcterm_ChnLen poly 84.9 67 0.0015 35.5 25.9 20 283-302 275-294 (498)
204 PF09744 Jnk-SapK_ap_N: JNK_SA 84.8 34 0.00073 31.8 17.3 49 413-461 49-97 (158)
205 PF06008 Laminin_I: Laminin Do 84.7 47 0.001 33.5 31.0 83 237-319 48-135 (264)
206 PLN02939 transferase, transfer 84.1 1E+02 0.0022 36.9 33.9 20 413-432 323-342 (977)
207 KOG4807 F-actin binding protei 84.1 60 0.0013 34.2 31.4 41 512-552 542-582 (593)
208 TIGR01000 bacteriocin_acc bact 84.1 71 0.0015 35.0 19.0 161 205-365 95-307 (457)
209 KOG4809 Rab6 GTPase-interactin 83.9 74 0.0016 35.1 25.3 80 226-305 330-416 (654)
210 PLN03229 acetyl-coenzyme A car 83.8 90 0.002 36.0 23.4 36 394-430 647-682 (762)
211 PF11932 DUF3450: Protein of u 83.8 50 0.0011 33.0 18.1 20 537-556 140-159 (251)
212 PF09738 DUF2051: Double stran 83.7 57 0.0012 33.7 19.3 23 486-508 277-299 (302)
213 KOG4403 Cell surface glycoprot 83.2 69 0.0015 34.2 19.5 138 413-552 251-407 (575)
214 PF13870 DUF4201: Domain of un 83.2 41 0.00089 31.6 16.3 30 268-297 104-133 (177)
215 TIGR01843 type_I_hlyD type I s 83.2 69 0.0015 34.2 22.1 37 420-456 143-179 (423)
216 PF05266 DUF724: Protein of un 83.2 43 0.00094 32.1 14.1 48 411-458 107-154 (190)
217 PF05911 DUF869: Plant protein 82.6 1.1E+02 0.0023 35.9 28.3 46 406-451 264-309 (769)
218 PF06818 Fez1: Fez1; InterPro 82.2 50 0.0011 31.9 19.3 60 394-457 15-74 (202)
219 PRK10929 putative mechanosensi 82.1 1.3E+02 0.0029 36.7 36.3 29 236-264 104-132 (1109)
220 PF07889 DUF1664: Protein of u 82.1 30 0.00065 30.8 11.6 30 266-295 65-94 (126)
221 KOG4460 Nuclear pore complex, 81.9 79 0.0017 34.9 16.5 40 418-457 592-631 (741)
222 smart00806 AIP3 Actin interact 81.7 74 0.0016 34.2 16.3 133 214-357 155-294 (426)
223 PF13166 AAA_13: AAA domain 81.6 1.1E+02 0.0024 35.4 26.3 60 308-367 411-473 (712)
224 PF09304 Cortex-I_coil: Cortex 80.9 35 0.00076 29.3 15.3 61 238-298 13-73 (107)
225 PRK15422 septal ring assembly 80.9 28 0.00061 28.1 10.6 29 200-228 4-32 (79)
226 PF05546 She9_MDM33: She9 / Md 80.4 58 0.0013 31.5 17.0 100 254-360 38-139 (207)
227 PRK03947 prefoldin subunit alp 80.4 44 0.00095 30.1 13.5 28 309-336 8-35 (140)
228 PRK10929 putative mechanosensi 80.2 1.5E+02 0.0033 36.2 34.1 31 427-457 207-237 (1109)
229 PF02050 FliJ: Flagellar FliJ 80.1 36 0.00078 28.9 13.0 76 269-344 5-82 (123)
230 PF07106 TBPIP: Tat binding pr 79.9 44 0.00096 31.2 12.9 9 301-309 14-22 (169)
231 PF10481 CENP-F_N: Cenp-F N-te 79.5 73 0.0016 32.1 19.5 98 418-523 78-189 (307)
232 PRK11281 hypothetical protein; 79.4 1.6E+02 0.0035 36.1 38.6 78 246-323 126-208 (1113)
233 TIGR03545 conserved hypothetic 79.4 43 0.00092 37.7 14.5 23 98-120 20-42 (555)
234 PF07798 DUF1640: Protein of u 79.1 58 0.0013 30.7 21.5 17 420-436 50-66 (177)
235 PF06705 SF-assemblin: SF-asse 79.0 73 0.0016 31.8 25.1 158 394-554 39-212 (247)
236 PF07111 HCR: Alpha helical co 78.9 1.3E+02 0.0027 34.5 41.1 51 316-366 389-439 (739)
237 PF09728 Taxilin: Myosin-like 78.9 85 0.0018 32.5 38.4 40 235-274 51-90 (309)
238 PF10498 IFT57: Intra-flagella 78.9 93 0.002 33.0 16.9 44 114-157 3-57 (359)
239 KOG0244 Kinesin-like protein [ 78.9 1.4E+02 0.0031 35.1 22.3 38 443-480 499-536 (913)
240 KOG0962 DNA repair protein RAD 78.8 1.7E+02 0.0037 36.0 42.9 43 438-480 1011-1054(1294)
241 PRK10361 DNA recombination pro 78.6 1.1E+02 0.0024 33.6 19.7 153 213-365 32-184 (475)
242 PF15397 DUF4618: Domain of un 78.3 79 0.0017 31.8 27.7 34 415-448 187-220 (258)
243 PF05103 DivIVA: DivIVA protei 78.0 1.9 4.1E-05 38.4 2.8 33 419-451 37-69 (131)
244 smart00502 BBC B-Box C-termina 77.8 45 0.00098 28.7 17.4 15 543-557 109-123 (127)
245 PRK15422 septal ring assembly 77.5 36 0.00079 27.5 11.0 51 406-456 10-60 (79)
246 COG4026 Uncharacterized protei 77.4 35 0.00075 33.2 11.0 53 246-298 133-185 (290)
247 PRK10476 multidrug resistance 77.3 98 0.0021 32.4 19.0 64 273-336 118-181 (346)
248 PF06005 DUF904: Protein of un 77.2 35 0.00077 27.2 10.3 10 314-323 53-62 (72)
249 TIGR00998 8a0101 efflux pump m 77.2 94 0.002 32.1 18.6 59 270-328 109-167 (334)
250 PF02050 FliJ: Flagellar FliJ 77.0 45 0.00098 28.3 14.1 50 248-297 45-94 (123)
251 PF14257 DUF4349: Domain of un 76.3 12 0.00026 37.7 8.5 56 280-336 136-191 (262)
252 KOG0978 E3 ubiquitin ligase in 76.1 1.5E+02 0.0034 34.0 42.7 44 413-456 502-545 (698)
253 PF10186 Atg14: UV radiation r 75.4 97 0.0021 31.4 19.9 15 209-223 29-43 (302)
254 PF03962 Mnd1: Mnd1 family; I 75.0 80 0.0017 30.2 14.1 28 418-445 66-93 (188)
255 PF04949 Transcrip_act: Transc 74.8 67 0.0015 29.2 17.9 37 490-530 110-146 (159)
256 PF06810 Phage_GP20: Phage min 74.8 40 0.00086 31.2 10.7 21 422-442 28-48 (155)
257 cd07671 F-BAR_PSTPIP1 The F-BA 74.6 96 0.0021 30.9 25.8 35 492-526 167-201 (242)
258 PF10212 TTKRSYEDQ: Predicted 74.4 1.5E+02 0.0031 32.9 20.4 43 492-534 469-511 (518)
259 PF10211 Ax_dynein_light: Axon 73.8 86 0.0019 30.0 14.3 34 423-456 122-155 (189)
260 COG4372 Uncharacterized protei 73.7 1.3E+02 0.0028 31.9 34.4 22 437-458 226-247 (499)
261 PF15254 CCDC14: Coiled-coil d 73.7 1.8E+02 0.0039 33.7 20.3 76 205-280 392-473 (861)
262 cd07651 F-BAR_PombeCdc15_like 73.6 98 0.0021 30.5 27.2 38 492-529 164-201 (236)
263 PF13747 DUF4164: Domain of un 73.1 54 0.0012 27.3 11.2 49 307-355 39-87 (89)
264 PF14193 DUF4315: Domain of un 72.7 41 0.0009 27.7 9.0 27 289-315 33-59 (83)
265 PF05791 Bacillus_HBL: Bacillu 72.7 89 0.0019 29.7 14.2 19 388-406 65-83 (184)
266 PF13870 DUF4201: Domain of un 72.5 86 0.0019 29.4 20.9 15 213-227 19-33 (177)
267 KOG4360 Uncharacterized coiled 72.4 1.6E+02 0.0034 32.4 17.8 51 241-301 194-244 (596)
268 KOG0249 LAR-interacting protei 72.1 1.9E+02 0.0041 33.2 17.2 16 264-279 165-180 (916)
269 KOG0972 Huntingtin interacting 72.0 1.2E+02 0.0026 30.9 14.8 83 394-480 246-328 (384)
270 PF06156 DUF972: Protein of un 72.0 27 0.00059 30.2 8.2 46 256-301 9-54 (107)
271 PF15003 HAUS2: HAUS augmin-li 71.8 1.2E+02 0.0026 30.7 14.6 22 544-565 186-207 (277)
272 PRK14154 heat shock protein Gr 71.5 81 0.0017 30.7 12.2 58 511-570 100-157 (208)
273 KOG4677 Golgi integral membran 71.4 1.5E+02 0.0034 31.9 28.3 17 510-526 452-468 (554)
274 PRK10328 DNA binding protein, 71.3 28 0.0006 31.4 8.4 43 267-309 33-75 (134)
275 PRK04325 hypothetical protein; 71.2 32 0.00069 27.6 8.0 50 253-302 7-56 (74)
276 PF04728 LPP: Lipoprotein leuc 71.0 38 0.00082 25.6 7.7 21 282-302 30-50 (56)
277 PF03915 AIP3: Actin interacti 70.9 1.6E+02 0.0035 31.9 18.0 23 437-459 215-237 (424)
278 KOG0982 Centrosomal protein Nu 70.9 1.5E+02 0.0034 31.7 25.9 21 530-550 451-472 (502)
279 PF06120 Phage_HK97_TLTM: Tail 70.8 1.3E+02 0.0029 31.0 18.4 34 239-272 72-105 (301)
280 PF00769 ERM: Ezrin/radixin/mo 70.6 1.2E+02 0.0026 30.3 16.6 86 238-326 9-94 (246)
281 PRK10947 global DNA-binding tr 70.6 29 0.00062 31.4 8.4 40 270-309 36-75 (135)
282 PF12777 MT: Microtubule-bindi 70.5 1.5E+02 0.0032 31.3 21.9 100 419-526 219-321 (344)
283 KOG2264 Exostosin EXT1L [Signa 70.5 26 0.00056 38.6 9.3 52 239-297 98-149 (907)
284 PF03938 OmpH: Outer membrane 70.4 86 0.0019 28.6 12.5 41 286-326 53-95 (158)
285 PF08172 CASP_C: CASP C termin 70.4 53 0.0011 32.9 11.2 76 216-297 1-121 (248)
286 COG0497 RecN ATPase involved i 70.4 1.9E+02 0.0041 32.5 27.4 32 492-523 349-380 (557)
287 PF07227 DUF1423: Protein of u 69.7 1.3E+02 0.0028 32.6 14.2 32 509-540 411-445 (446)
288 KOG4302 Microtubule-associated 69.5 2.1E+02 0.0046 32.8 28.1 66 392-461 106-186 (660)
289 PF00769 ERM: Ezrin/radixin/mo 69.3 1.3E+02 0.0028 30.1 18.0 53 246-298 38-90 (246)
290 COG4477 EzrA Negative regulato 69.3 1.9E+02 0.0041 32.1 41.5 43 413-455 353-395 (570)
291 PF06785 UPF0242: Uncharacteri 69.2 1.5E+02 0.0032 30.8 20.5 90 421-525 85-177 (401)
292 PF04912 Dynamitin: Dynamitin 69.2 1.7E+02 0.0036 31.4 28.7 61 416-476 324-384 (388)
293 PF10212 TTKRSYEDQ: Predicted 69.1 1.5E+02 0.0032 32.9 14.8 89 256-354 421-513 (518)
294 PF09738 DUF2051: Double stran 69.1 39 0.00084 34.9 10.1 23 308-330 141-163 (302)
295 PRK09343 prefoldin subunit bet 69.1 81 0.0018 27.8 11.1 30 325-354 82-111 (121)
296 PRK09841 cryptic autophosphory 69.0 85 0.0018 36.7 14.2 12 175-186 245-256 (726)
297 PRK00409 recombination and DNA 69.0 1.9E+02 0.004 34.2 16.9 11 69-79 350-360 (782)
298 PF07058 Myosin_HC-like: Myosi 68.9 1.4E+02 0.0031 30.5 13.6 60 464-526 70-131 (351)
299 PLN02678 seryl-tRNA synthetase 68.8 39 0.00084 36.9 10.6 57 277-333 41-97 (448)
300 PF08581 Tup_N: Tup N-terminal 68.7 63 0.0014 26.3 12.5 27 494-520 48-74 (79)
301 PRK04406 hypothetical protein; 68.4 51 0.0011 26.5 8.6 47 255-301 11-57 (75)
302 TIGR01069 mutS2 MutS2 family p 68.1 2.4E+02 0.0051 33.3 17.5 21 52-72 34-54 (771)
303 KOG2751 Beclin-like protein [S 68.1 1.6E+02 0.0035 31.6 14.4 14 248-261 157-170 (447)
304 PF10458 Val_tRNA-synt_C: Valy 68.0 23 0.00049 27.6 6.4 30 275-304 3-32 (66)
305 PF04102 SlyX: SlyX; InterPro 68.0 34 0.00075 26.9 7.5 46 409-454 6-51 (69)
306 PRK04406 hypothetical protein; 67.9 53 0.0011 26.5 8.6 42 407-448 11-52 (75)
307 PF09731 Mitofilin: Mitochondr 67.8 2.2E+02 0.0047 32.2 20.2 18 509-526 370-387 (582)
308 PF10267 Tmemb_cc2: Predicted 67.6 1.8E+02 0.0039 31.2 16.1 16 507-522 302-317 (395)
309 PF07798 DUF1640: Protein of u 67.5 1.1E+02 0.0024 28.8 18.2 28 434-461 72-99 (177)
310 PF03999 MAP65_ASE1: Microtubu 67.3 31 0.00068 39.4 10.0 35 333-367 147-181 (619)
311 COG4913 Uncharacterized protei 67.3 2.4E+02 0.0052 32.5 28.8 62 286-354 670-731 (1104)
312 PF08826 DMPK_coil: DMPK coile 67.3 52 0.0011 25.4 8.0 37 246-282 16-52 (61)
313 PRK00409 recombination and DNA 67.2 2.6E+02 0.0057 33.0 18.4 21 52-72 34-54 (782)
314 PF04849 HAP1_N: HAP1 N-termin 67.2 1.6E+02 0.0034 30.4 27.4 22 406-427 166-187 (306)
315 KOG4603 TBP-1 interacting prot 67.2 1.1E+02 0.0024 28.6 14.8 56 416-480 88-143 (201)
316 PF04102 SlyX: SlyX; InterPro 67.1 35 0.00076 26.9 7.3 45 257-301 6-50 (69)
317 PF04977 DivIC: Septum formati 67.1 31 0.00068 27.4 7.4 44 273-316 21-64 (80)
318 KOG2129 Uncharacterized conser 67.0 1.8E+02 0.004 31.1 26.2 18 204-221 47-64 (552)
319 PF14282 FlxA: FlxA-like prote 67.0 37 0.00081 29.2 8.1 51 409-459 21-75 (106)
320 PF04012 PspA_IM30: PspA/IM30 66.8 1.3E+02 0.0028 29.3 22.9 10 494-503 121-130 (221)
321 TIGR03752 conj_TIGR03752 integ 66.8 52 0.0011 35.9 10.7 14 284-297 81-94 (472)
322 KOG0240 Kinesin (SMY1 subfamil 66.7 2.2E+02 0.0047 31.9 20.3 41 262-302 414-454 (607)
323 PF13514 AAA_27: AAA domain 66.5 3.2E+02 0.007 33.7 44.0 55 266-320 677-739 (1111)
324 PRK02793 phi X174 lysis protei 66.5 54 0.0012 26.2 8.3 44 408-451 9-52 (72)
325 PRK14161 heat shock protein Gr 66.4 1.2E+02 0.0026 28.8 12.7 59 511-570 67-125 (178)
326 COG0576 GrpE Molecular chapero 66.4 79 0.0017 30.4 11.1 54 511-566 84-137 (193)
327 PRK04325 hypothetical protein; 66.4 54 0.0012 26.3 8.4 42 409-450 11-52 (74)
328 KOG4807 F-actin binding protei 66.2 1.8E+02 0.004 30.8 21.8 31 448-478 546-576 (593)
329 PRK09174 F0F1 ATP synthase sub 65.8 1.3E+02 0.0029 29.1 15.8 23 501-523 151-173 (204)
330 PF04899 MbeD_MobD: MbeD/MobD 65.5 68 0.0015 25.5 9.9 60 392-451 6-65 (70)
331 KOG4657 Uncharacterized conser 65.4 1.4E+02 0.0031 29.2 16.5 55 246-300 70-124 (246)
332 PRK11519 tyrosine kinase; Prov 65.0 1.9E+02 0.004 33.8 16.0 12 175-186 245-256 (719)
333 PF15035 Rootletin: Ciliary ro 64.9 1.3E+02 0.0028 28.6 20.7 115 393-519 61-175 (182)
334 TIGR03545 conserved hypothetic 64.8 1.5E+02 0.0032 33.5 14.4 17 507-523 241-257 (555)
335 PRK13169 DNA replication intia 64.8 47 0.001 28.9 8.2 45 256-300 9-53 (110)
336 PF14988 DUF4515: Domain of un 64.7 1.4E+02 0.0031 29.0 21.3 116 181-302 3-126 (206)
337 PRK00736 hypothetical protein; 64.5 62 0.0013 25.5 8.2 45 257-301 7-51 (68)
338 PRK02119 hypothetical protein; 64.2 64 0.0014 25.8 8.4 40 408-447 10-49 (73)
339 PF09787 Golgin_A5: Golgin sub 64.1 2.4E+02 0.0052 31.4 33.4 20 207-226 116-135 (511)
340 PF04859 DUF641: Plant protein 64.0 87 0.0019 28.1 10.0 51 247-297 79-129 (131)
341 PF04582 Reo_sigmaC: Reovirus 64.0 14 0.0003 38.3 5.6 25 317-341 115-139 (326)
342 COG3879 Uncharacterized protei 63.9 1.2E+02 0.0026 30.2 11.9 17 368-384 112-128 (247)
343 PF07200 Mod_r: Modifier of ru 63.7 1.2E+02 0.0025 27.6 13.4 62 248-309 34-97 (150)
344 PLN02939 transferase, transfer 63.5 3.3E+02 0.0072 32.8 26.2 25 235-259 227-251 (977)
345 PRK14143 heat shock protein Gr 63.2 1.4E+02 0.003 29.7 12.4 54 511-566 115-168 (238)
346 PF09304 Cortex-I_coil: Cortex 63.2 99 0.0021 26.6 15.4 16 495-510 61-76 (107)
347 PRK14150 heat shock protein Gr 63.2 1.5E+02 0.0032 28.6 12.4 54 511-566 86-139 (193)
348 PF15450 DUF4631: Domain of un 63.2 2.4E+02 0.0053 31.1 41.2 28 510-537 419-446 (531)
349 PF07851 TMPIT: TMPIT-like pro 63.1 84 0.0018 32.8 11.2 54 242-295 5-58 (330)
350 PRK14145 heat shock protein Gr 63.0 1.3E+02 0.0028 29.1 11.7 49 511-565 93-141 (196)
351 PF11172 DUF2959: Protein of u 62.7 1.5E+02 0.0032 28.6 17.6 24 487-510 114-137 (201)
352 COG3074 Uncharacterized protei 62.7 74 0.0016 25.0 10.7 42 414-455 18-59 (79)
353 PF14735 HAUS4: HAUS augmin-li 62.7 1.7E+02 0.0037 29.2 21.3 79 283-365 147-225 (238)
354 PRK00295 hypothetical protein; 62.4 72 0.0016 25.1 8.2 40 411-450 9-48 (68)
355 PF04728 LPP: Lipoprotein leuc 62.2 67 0.0014 24.3 7.6 15 344-358 40-54 (56)
356 KOG0982 Centrosomal protein Nu 62.2 2.3E+02 0.005 30.5 36.6 55 207-261 215-270 (502)
357 PRK14163 heat shock protein Gr 62.2 1.5E+02 0.0032 29.1 12.0 46 511-566 88-133 (214)
358 TIGR01069 mutS2 MutS2 family p 62.0 3.2E+02 0.0069 32.2 17.1 7 72-78 348-354 (771)
359 PRK14140 heat shock protein Gr 62.0 1.5E+02 0.0033 28.4 12.3 53 511-566 85-137 (191)
360 TIGR02473 flagell_FliJ flagell 61.9 1.2E+02 0.0025 27.0 16.2 79 261-339 12-93 (141)
361 TIGR02449 conserved hypothetic 61.8 76 0.0016 24.8 8.9 43 417-459 3-45 (65)
362 CHL00019 atpF ATP synthase CF0 61.8 1.5E+02 0.0032 28.1 18.7 48 426-473 60-107 (184)
363 COG2882 FliJ Flagellar biosynt 61.3 1.3E+02 0.0029 27.5 15.9 85 258-342 12-99 (148)
364 PRK02793 phi X174 lysis protei 61.2 71 0.0015 25.4 8.1 45 257-301 10-54 (72)
365 PRK11546 zraP zinc resistance 61.2 72 0.0016 29.1 9.1 37 290-326 72-108 (143)
366 PF04582 Reo_sigmaC: Reovirus 61.0 12 0.00025 38.8 4.5 46 234-279 28-73 (326)
367 PF14197 Cep57_CLD_2: Centroso 60.9 82 0.0018 24.9 10.2 43 414-456 5-47 (69)
368 PF05529 Bap31: B-cell recepto 60.8 85 0.0018 29.9 10.3 25 406-430 117-141 (192)
369 PF05615 THOC7: Tho complex su 60.7 1.3E+02 0.0028 27.1 16.1 62 246-308 72-133 (139)
370 PRK05431 seryl-tRNA synthetase 60.6 50 0.0011 35.9 9.6 23 543-566 293-315 (425)
371 PRK02119 hypothetical protein; 60.6 86 0.0019 25.1 8.5 41 259-299 13-53 (73)
372 PRK07720 fliJ flagellar biosyn 60.6 1.3E+02 0.0028 27.2 17.0 92 265-356 19-116 (146)
373 PRK00295 hypothetical protein; 60.6 73 0.0016 25.1 8.0 44 257-300 7-50 (68)
374 PF00170 bZIP_1: bZIP transcri 60.4 52 0.0011 25.3 7.2 38 251-288 22-59 (64)
375 COG3074 Uncharacterized protei 60.0 83 0.0018 24.8 10.2 21 203-223 7-27 (79)
376 PF05384 DegS: Sensor protein 60.0 1.5E+02 0.0032 27.6 22.6 120 236-358 29-149 (159)
377 CHL00118 atpG ATP synthase CF0 59.6 1.4E+02 0.0031 27.3 16.3 11 448-458 80-90 (156)
378 COG4717 Uncharacterized conser 59.6 3.6E+02 0.0077 31.9 37.4 34 414-447 774-807 (984)
379 PRK07353 F0F1 ATP synthase sub 59.6 1.3E+02 0.0028 26.9 15.8 11 447-457 62-72 (140)
380 PF09403 FadA: Adhesion protei 59.6 1.3E+02 0.0028 26.8 12.5 30 500-529 90-119 (126)
381 COG3352 FlaC Putative archaeal 59.4 85 0.0018 28.7 9.1 76 400-478 51-126 (157)
382 PF08826 DMPK_coil: DMPK coile 59.4 80 0.0017 24.4 9.9 42 413-454 17-58 (61)
383 TIGR00414 serS seryl-tRNA synt 59.2 98 0.0021 33.5 11.5 56 276-331 37-93 (418)
384 PRK14153 heat shock protein Gr 58.9 1.7E+02 0.0038 28.1 11.8 54 511-567 81-134 (194)
385 PRK14158 heat shock protein Gr 58.7 1.8E+02 0.0038 28.1 12.3 53 511-567 88-140 (194)
386 PF07139 DUF1387: Protein of u 58.4 2.3E+02 0.0049 29.2 17.8 146 392-568 149-298 (302)
387 PF13949 ALIX_LYPXL_bnd: ALIX 58.4 2.1E+02 0.0046 28.9 26.4 38 242-279 78-115 (296)
388 PRK06231 F0F1 ATP synthase sub 58.4 1.8E+02 0.0039 28.1 18.7 36 440-475 98-133 (205)
389 PF05531 NPV_P10: Nucleopolyhe 58.0 64 0.0014 26.0 7.2 47 284-330 12-58 (75)
390 PF14992 TMCO5: TMCO5 family 57.8 1.9E+02 0.004 29.5 12.2 140 212-363 9-151 (280)
391 KOG2911 Uncharacterized conser 57.5 1.9E+02 0.0041 31.2 12.6 12 545-556 350-361 (439)
392 PRK14155 heat shock protein Gr 57.4 1.5E+02 0.0032 28.9 11.2 59 511-570 61-120 (208)
393 PF01920 Prefoldin_2: Prefoldi 57.3 1.2E+02 0.0025 25.5 11.0 24 315-338 70-93 (106)
394 COG3599 DivIVA Cell division i 57.2 2E+02 0.0043 28.2 18.8 48 392-439 22-69 (212)
395 KOG0992 Uncharacterized conser 57.2 3E+02 0.0065 30.3 34.2 255 200-533 165-419 (613)
396 PRK00736 hypothetical protein; 57.2 94 0.002 24.5 8.1 37 412-448 10-46 (68)
397 KOG2685 Cystoskeletal protein 57.2 2.7E+02 0.006 29.8 33.6 101 435-539 278-390 (421)
398 PRK13454 F0F1 ATP synthase sub 57.0 1.8E+02 0.0038 27.6 15.7 17 507-523 135-151 (181)
399 KOG4809 Rab6 GTPase-interactin 56.8 3.2E+02 0.0069 30.4 33.4 73 283-358 331-403 (654)
400 COG0497 RecN ATPase involved i 56.8 3.3E+02 0.0072 30.6 26.4 61 177-246 157-217 (557)
401 PF06008 Laminin_I: Laminin Do 56.3 2.2E+02 0.0048 28.5 33.5 8 335-342 87-94 (264)
402 PRK14139 heat shock protein Gr 56.2 1.9E+02 0.0041 27.6 11.7 50 511-565 80-129 (185)
403 PRK14147 heat shock protein Gr 56.2 1.8E+02 0.0039 27.4 11.7 52 511-567 66-117 (172)
404 PF06810 Phage_GP20: Phage min 56.1 95 0.0021 28.7 9.3 21 305-325 49-69 (155)
405 PF06632 XRCC4: DNA double-str 56.0 1.1E+02 0.0023 32.3 10.7 41 236-276 167-208 (342)
406 PF12329 TMF_DNA_bd: TATA elem 55.9 1.1E+02 0.0023 24.6 10.3 33 256-288 34-66 (74)
407 PF10805 DUF2730: Protein of u 55.5 1.2E+02 0.0026 26.1 9.3 25 306-330 64-88 (106)
408 PRK09841 cryptic autophosphory 55.5 3.6E+02 0.0079 31.5 16.2 24 309-332 341-364 (726)
409 KOG3809 Microtubule-binding pr 55.5 3E+02 0.0065 29.7 15.0 95 242-342 480-574 (583)
410 cd07658 F-BAR_NOSTRIN The F-BA 55.4 2.2E+02 0.0048 28.2 26.6 36 489-524 182-217 (239)
411 PF07464 ApoLp-III: Apolipopho 55.3 1.7E+02 0.0036 27.2 10.6 31 388-418 26-56 (155)
412 PRK00846 hypothetical protein; 55.2 1.1E+02 0.0024 24.7 8.4 44 256-299 14-57 (77)
413 PRK13729 conjugal transfer pil 55.0 56 0.0012 35.7 8.5 11 289-299 110-120 (475)
414 COG1382 GimC Prefoldin, chaper 54.9 1.5E+02 0.0033 26.1 13.8 105 306-460 5-109 (119)
415 PF05600 DUF773: Protein of un 54.8 1.7E+02 0.0037 32.6 12.6 78 223-300 421-499 (507)
416 PF10805 DUF2730: Protein of u 54.7 77 0.0017 27.3 7.9 56 213-274 34-91 (106)
417 PRK05759 F0F1 ATP synthase sub 54.6 1.7E+02 0.0037 26.6 18.3 14 446-459 60-73 (156)
418 PRK14162 heat shock protein Gr 54.5 1.9E+02 0.0042 27.8 11.3 52 511-565 87-138 (194)
419 cd00632 Prefoldin_beta Prefold 54.4 1.4E+02 0.003 25.5 12.1 36 259-294 67-102 (105)
420 PRK14472 F0F1 ATP synthase sub 54.4 1.9E+02 0.0041 27.1 18.6 48 428-475 56-103 (175)
421 PRK08475 F0F1 ATP synthase sub 54.2 1.9E+02 0.0041 27.0 15.5 34 440-473 72-105 (167)
422 TIGR03752 conj_TIGR03752 integ 54.2 78 0.0017 34.5 9.4 12 286-297 90-101 (472)
423 PLN02320 seryl-tRNA synthetase 53.9 75 0.0016 35.2 9.5 46 286-332 110-155 (502)
424 TIGR03017 EpsF chain length de 53.8 3.2E+02 0.0069 29.5 25.9 21 438-458 314-334 (444)
425 COG1842 PspA Phage shock prote 53.5 2.3E+02 0.0051 27.9 25.6 94 400-504 85-178 (225)
426 KOG4438 Centromere-associated 53.4 3.2E+02 0.0069 29.4 46.8 78 278-365 218-295 (446)
427 PRK10636 putative ABC transpor 53.4 96 0.0021 35.6 10.9 62 276-337 563-628 (638)
428 PF08657 DASH_Spc34: DASH comp 53.3 71 0.0015 32.2 8.6 13 16-28 19-31 (259)
429 COG0216 PrfA Protein chain rel 53.3 1.7E+02 0.0038 30.5 11.3 43 214-256 7-55 (363)
430 PRK14141 heat shock protein Gr 53.3 1.9E+02 0.004 28.3 11.1 54 511-565 79-136 (209)
431 cd07653 F-BAR_CIP4-like The F- 52.9 2.4E+02 0.0052 27.9 30.3 31 294-324 9-39 (251)
432 PF09763 Sec3_C: Exocyst compl 52.5 2.7E+02 0.0059 32.3 14.5 17 297-313 93-109 (701)
433 PF13094 CENP-Q: CENP-Q, a CEN 52.5 1E+02 0.0023 28.4 9.1 136 416-553 22-160 (160)
434 PRK03947 prefoldin subunit alp 52.3 1.8E+02 0.0038 26.1 14.0 40 256-295 95-134 (140)
435 TIGR02971 heterocyst_DevB ABC 52.0 2.9E+02 0.0062 28.5 16.7 68 262-329 90-157 (327)
436 PF01442 Apolipoprotein: Apoli 51.8 2E+02 0.0043 26.6 24.8 38 520-557 158-195 (202)
437 PF09486 HrpB7: Bacterial type 51.7 2E+02 0.0044 26.7 12.1 98 203-300 18-124 (158)
438 PRK05689 fliJ flagellar biosyn 51.5 1.8E+02 0.004 26.1 16.9 78 260-337 14-94 (147)
439 PRK11519 tyrosine kinase; Prov 51.4 4.5E+02 0.0099 30.6 17.2 19 312-330 344-362 (719)
440 KOG1760 Molecular chaperone Pr 51.3 1.7E+02 0.0038 25.8 11.6 33 446-478 81-113 (131)
441 PF01025 GrpE: GrpE; InterPro 50.9 93 0.002 28.7 8.6 56 512-570 60-115 (165)
442 PF13747 DUF4164: Domain of un 50.5 1.5E+02 0.0032 24.7 10.2 43 237-279 35-77 (89)
443 PRK00846 hypothetical protein; 50.4 1.4E+02 0.0029 24.3 9.0 37 409-445 15-51 (77)
444 PTZ00446 vacuolar sorting prot 50.4 2.4E+02 0.0052 27.1 17.6 112 203-324 30-147 (191)
445 PF07544 Med9: RNA polymerase 50.4 97 0.0021 25.4 7.5 56 234-289 21-79 (83)
446 COG0172 SerS Seryl-tRNA synthe 50.3 1.4E+02 0.003 32.5 10.6 62 269-330 29-91 (429)
447 PF15035 Rootletin: Ciliary ro 50.2 2.3E+02 0.0051 26.9 14.3 33 309-341 90-122 (182)
448 PF08647 BRE1: BRE1 E3 ubiquit 50.1 1.5E+02 0.0034 24.9 12.7 54 247-300 16-69 (96)
449 TIGR02231 conserved hypothetic 49.9 2E+02 0.0044 32.0 12.5 30 235-264 72-101 (525)
450 PRK13455 F0F1 ATP synthase sub 49.5 2.3E+02 0.005 26.7 18.2 38 425-462 62-99 (184)
451 PRK14149 heat shock protein Gr 49.2 2.1E+02 0.0047 27.4 10.7 54 510-566 83-136 (191)
452 KOG1103 Predicted coiled-coil 49.1 3.3E+02 0.0072 28.4 17.4 27 500-526 242-268 (561)
453 COG4467 Regulator of replicati 49.0 1.1E+02 0.0023 26.4 7.5 49 256-304 9-57 (114)
454 PF05529 Bap31: B-cell recepto 49.0 1.5E+02 0.0033 28.1 9.9 6 203-208 96-101 (192)
455 PRK07352 F0F1 ATP synthase sub 48.9 2.3E+02 0.005 26.5 18.3 32 440-471 69-100 (174)
456 PF12072 DUF3552: Domain of un 48.8 2.5E+02 0.0055 27.0 19.8 26 411-436 75-100 (201)
457 PF12252 SidE: Dot/Icm substra 48.8 5.7E+02 0.012 31.0 29.9 73 283-367 1070-1142(1439)
458 PRK11578 macrolide transporter 48.2 3.3E+02 0.0072 28.7 13.4 35 286-320 123-157 (370)
459 KOG1899 LAR transmembrane tyro 47.9 4.7E+02 0.01 29.7 22.0 214 133-356 38-266 (861)
460 PF04012 PspA_IM30: PspA/IM30 47.8 2.7E+02 0.0059 27.0 20.3 13 392-404 8-20 (221)
461 PF07028 DUF1319: Protein of u 47.6 2E+02 0.0044 25.5 10.2 59 418-476 43-101 (126)
462 KOG4460 Nuclear pore complex, 47.5 4.4E+02 0.0096 29.4 17.4 51 406-456 587-637 (741)
463 PRK13453 F0F1 ATP synthase sub 47.3 2.4E+02 0.0053 26.3 18.2 17 444-460 72-88 (173)
464 PRK14144 heat shock protein Gr 47.3 2.7E+02 0.0059 26.9 11.5 54 510-567 92-145 (199)
465 PF11172 DUF2959: Protein of u 46.8 2.8E+02 0.006 26.8 17.6 10 514-523 167-176 (201)
466 PF05615 THOC7: Tho complex su 46.8 2.2E+02 0.0047 25.5 12.0 58 239-296 51-108 (139)
467 PRK00888 ftsB cell division pr 46.7 97 0.0021 26.6 7.3 25 276-300 34-58 (105)
468 PF06120 Phage_HK97_TLTM: Tail 46.6 3.5E+02 0.0076 27.9 21.2 27 334-361 176-202 (301)
469 PRK14148 heat shock protein Gr 46.5 2.8E+02 0.006 26.7 12.3 52 511-565 88-139 (195)
470 PF04642 DUF601: Protein of un 46.5 2.1E+02 0.0046 28.5 10.1 51 510-560 252-306 (311)
471 PF15290 Syntaphilin: Golgi-lo 46.2 3.4E+02 0.0073 27.6 15.6 18 444-461 91-108 (305)
472 cd00176 SPEC Spectrin repeats, 46.1 2.5E+02 0.0053 26.0 13.4 210 202-421 2-211 (213)
473 TIGR00293 prefoldin, archaeal 46.1 84 0.0018 27.6 7.1 95 203-301 2-125 (126)
474 PF03148 Tektin: Tektin family 46.0 4E+02 0.0087 28.5 44.6 45 252-303 47-91 (384)
475 KOG2077 JNK/SAPK-associated pr 45.7 4.8E+02 0.01 29.3 14.1 112 395-514 317-431 (832)
476 PF05546 She9_MDM33: She9 / Md 45.6 2.9E+02 0.0064 26.8 16.9 130 201-348 3-133 (207)
477 PRK13460 F0F1 ATP synthase sub 45.4 2.6E+02 0.0056 26.1 18.7 120 416-548 42-164 (173)
478 COG1382 GimC Prefoldin, chaper 45.4 2.2E+02 0.0047 25.2 12.0 85 264-348 8-111 (119)
479 PF05791 Bacillus_HBL: Bacillu 45.3 2.8E+02 0.006 26.3 11.4 117 147-286 63-180 (184)
480 PF01496 V_ATPase_I: V-type AT 45.1 68 0.0015 37.6 8.1 236 242-486 11-280 (759)
481 KOG2675 Adenylate cyclase-asso 45.0 17 0.00036 38.9 2.6 35 9-45 230-265 (480)
482 PRK14151 heat shock protein Gr 44.7 2.8E+02 0.0061 26.2 11.0 95 464-562 24-118 (176)
483 KOG4603 TBP-1 interacting prot 44.6 2.7E+02 0.0059 26.1 14.8 99 241-339 79-184 (201)
484 TIGR01730 RND_mfp RND family e 44.6 2.1E+02 0.0046 29.0 11.0 73 265-337 60-132 (322)
485 PF02994 Transposase_22: L1 tr 44.6 59 0.0013 34.6 6.8 98 257-354 86-184 (370)
486 cd07672 F-BAR_PSTPIP2 The F-BA 44.6 3.3E+02 0.0072 27.1 23.5 218 293-560 8-225 (240)
487 TIGR02894 DNA_bind_RsfA transc 44.5 2.7E+02 0.0058 25.9 10.3 72 219-290 82-153 (161)
488 PF14282 FlxA: FlxA-like prote 44.4 91 0.002 26.8 6.8 47 255-301 19-69 (106)
489 PRK15396 murein lipoprotein; P 44.4 1.5E+02 0.0032 24.2 7.4 46 257-302 27-72 (78)
490 TIGR00293 prefoldin, archaeal 44.4 2.2E+02 0.0047 24.9 11.5 117 317-439 2-125 (126)
491 KOG3091 Nuclear pore complex, 44.3 4.7E+02 0.01 28.8 16.3 156 265-431 337-508 (508)
492 PRK09973 putative outer membra 44.3 1.1E+02 0.0024 25.2 6.8 48 257-304 26-73 (85)
493 PRK10361 DNA recombination pro 44.3 4.8E+02 0.01 28.8 25.4 159 396-557 36-197 (475)
494 PRK15178 Vi polysaccharide exp 44.2 4.6E+02 0.0099 28.6 19.6 169 302-516 210-389 (434)
495 TIGR02338 gimC_beta prefoldin, 44.2 2.1E+02 0.0045 24.6 12.1 106 306-447 2-107 (110)
496 PF03999 MAP65_ASE1: Microtubu 44.1 1.4E+02 0.0031 34.1 10.3 316 199-557 90-435 (619)
497 PF08172 CASP_C: CASP C termin 44.0 3.5E+02 0.0075 27.1 13.8 116 330-449 1-135 (248)
498 KOG4360 Uncharacterized coiled 44.0 4.9E+02 0.011 28.8 18.7 144 199-354 158-301 (596)
499 PRK08476 F0F1 ATP synthase sub 43.8 2.5E+02 0.0053 25.4 16.4 108 426-533 32-141 (141)
500 PF02994 Transposase_22: L1 tr 43.3 70 0.0015 34.1 7.2 107 196-304 87-193 (370)
No 1
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.1e-88 Score=701.47 Aligned_cols=546 Identities=30% Similarity=0.483 Sum_probs=492.6
Q ss_pred CCCC--CCCCCCCCC--CCC----CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCChHHHHHHHHHHHH
Q 008135 1 MRGK--VRRRPTESA--LQP----TPDLYG-GNRFGGSRDSDASFASSRPSSIGMG-RASAADLYTDRSHQSSAIRAINA 70 (576)
Q Consensus 1 ~~~~--~~~~~~~~~--~~~----~~~~~~-~~~~~~~r~s~~s~~~sr~s~~g~~-~~~d~rpl~dk~~q~~~~~~i~~ 70 (576)
||++ ++|++..|. .+| +||.+| ..+.|++|+|++| ||-|++..- +..||||++||+|+++|++.|++
T Consensus 5 ~r~~~~~~r~t~~p~~~i~P~~~v~~pT~~~~valf~~r~S~~s---~~~~~~~~~~s~~dpRpl~dk~~~s~c~~~I~~ 81 (581)
T KOG0995|consen 5 MRRKTAGKRGTGTPSGGINPTKRVTTPTSGTSVALFDRRPSLHS---SRLSSFNTSNSIRDPRPLSDKRYRSQCIRQIYN 81 (581)
T ss_pred hhccccccccccCCCCCCCCCCCCCCCCCCcccccCCCCccccc---ccccccCchhccCCCCCcccHHHHHHHHHHHHH
Confidence 6733 566565555 233 444444 8899999999997 553333221 11289999999999999999999
Q ss_pred HhhhCCCC--CCCCCCCCCCHHHHHHHHHHHHHcCCCCC--CcChHhHHHHHHHhcCCCCcccccccccCCCCCChHHHH
Q 008135 71 HLSSHSFH--IAFPLKQVPSVKDITDVIKFLISQLDYPS--TTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYL 146 (576)
Q Consensus 71 fL~~~~~~--~~~k~l~~pt~k~f~~i~~~L~~~ld~~~--~~k~eeev~~~lk~l~yP~~i~ks~l~~~g~~h~wp~~l 146 (576)
||.++||+ +|++.+..||+|||+.||.|||.+|||.+ +.+||+||+++||.|||||.+++|++.|+|+||+||++|
T Consensus 82 fL~engf~~~iS~k~l~~PS~KdF~~iFkfLY~~Ldp~y~f~~r~EeEV~~ilK~L~YPf~~siSs~~a~gspH~WP~iL 161 (581)
T KOG0995|consen 82 FLVENGFSHPISIKLLMKPSVKDFIAIFKFLYGFLDPDYEFPERIEEEVVQILKNLKYPFLLSISSLQAAGSPHNWPHIL 161 (581)
T ss_pred HHHHcCCCCChhhhhcCCCccccHHHHHHHHHhccCCCcccchhHHHHHHHHHHhCCCCcccchhhhccCCCCCccHHHH
Confidence 99999998 89999999999999999999999999765 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhCCcc---c----ccchHHHHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHhHHHHHHHH
Q 008135 147 ALIHWLVQIASYNYHLTTNSKA---F----VENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEEL 219 (576)
Q Consensus 147 ~~L~WLv~l~~~~~~~~~~~~~---~----~~~~~~~~y~~~~Y~~fl~g~d~~~~~l~~~~~~kl~~~~~~~~~~~~~L 219 (576)
|||||||+|+++..++..+++. . ..+..||+|+++||.+||.|+|+ +.+++.+|..+|++.......++..|
T Consensus 162 ~mlhWlvdlI~~~t~~v~~~~l~q~~~ed~~m~k~f~dy~~~~Y~~fl~g~d~-~~~~~~Elk~~l~~~~~~i~~~ie~l 240 (581)
T KOG0995|consen 162 GMLHWLVDLIRINTALVEDSPLEQEEAEDKTMNKLFFDYTIRSYTSFLKGEDN-SSELEDELKHRLEKYFTSIANEIEDL 240 (581)
T ss_pred HHHHHHHHHHHHhHHHhhccchhccchHHHHHHHHHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988776522 1 12247999999999999999998 56899999999998888777777777
Q ss_pred HHHHHHHHh----ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 220 KKKVSEMEG----AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (576)
Q Consensus 220 ~~~~~~le~----l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL 295 (576)
++...+|++ .+..|++.+.+++++++|++|+.||++|+.++..+.+.|++.+..++.|++.++.+++.|+.++.+|
T Consensus 241 ~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~L 320 (581)
T KOG0995|consen 241 KKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDEL 320 (581)
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666555 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccee--
Q 008135 296 KKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLA-TEIQ-- 372 (576)
Q Consensus 296 ~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~l~-~d~~-- 372 (576)
+++|+.|++|++||++||.|+.+|.++++.+..+++.|.+.+|+++..+...++++++++.+||+++++|+++ ..+.
T Consensus 321 k~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n 400 (581)
T KOG0995|consen 321 KKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKN 400 (581)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 3322
Q ss_pred EeeCCCCCCCccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008135 373 YSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLN 452 (576)
Q Consensus 373 ~~ln~~~~~~~ei~~~~~k~~ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~ 452 (576)
+.+|+.+..+ .+++|+..++|.|.+++++|+..++....++..||+.+++++..++++...+..++.++..+.+.|+
T Consensus 401 ~~~~pe~~~~---~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~ 477 (581)
T KOG0995|consen 401 LERNPERAAT---NGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYE 477 (581)
T ss_pred CCcCCccCcc---ccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456655555 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 453 LLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKER 532 (576)
Q Consensus 453 ~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~ 532 (576)
..+++.+++...|..|+++|++++..++-.+....++|.+.+++++..++.+..++++++++++++|..+++.|.++|..
T Consensus 478 ~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~ 557 (581)
T KOG0995|consen 478 LKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDRMVATGEEERQKIAKQLFAVIDQISDFKVS 557 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 008135 533 MESKISKMNKGISETALTVSE 553 (576)
Q Consensus 533 i~~~i~~~~~~~~~~~~~i~~ 553 (576)
|++.|++.+.++...+++|..
T Consensus 558 iqs~le~~k~~~~~~~~ei~~ 578 (581)
T KOG0995|consen 558 IQSSLENLKADLHKECEEIEK 578 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988888777743
No 2
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=100.00 E-value=7.2e-71 Score=555.25 Aligned_cols=495 Identities=19% Similarity=0.308 Sum_probs=444.6
Q ss_pred CCCCCCChHHHHHHHHHHHHHhhhCCCC--CCCCCCCCCCHHHHHHHHHHHHHcCCCCC--CcChHhHHHHHHHhcCCCC
Q 008135 51 AADLYTDRSHQSSAIRAINAHLSSHSFH--IAFPLKQVPSVKDITDVIKFLISQLDYPS--TTKFEEDLFVVLKSLSCPF 126 (576)
Q Consensus 51 d~rpl~dk~~q~~~~~~i~~fL~~~~~~--~~~k~l~~pt~k~f~~i~~~L~~~ld~~~--~~k~eeev~~~lk~l~yP~ 126 (576)
|||||+||+||++|...|++||.++||+ ++++.+..||+|+|+.||+|||.++||.| ++.+|+||+.+||.|+|||
T Consensus 96 DpRplrdk~yqq~c~~~I~~yL~engfd~pis~k~l~~PS~k~F~~IFK~LY~~lDp~f~F~~r~E~eV~~~lKnL~YPf 175 (622)
T COG5185 96 DPRPLRDKNYQQACQEEIYDYLKENGFDIPISIKFLKQPSQKGFIIIFKWLYLRLDPGFGFTKRIENEVYQILKNLRYPF 175 (622)
T ss_pred CCcccccchHHHHHHHHHHHHHHHcCCCcchhHHHhcCCccccHHHHHHHHHhccCCCCCcchhhHHHHHHHHHhcCCch
Confidence 9999999999999999999999999995 78899999999999999999999999665 9999999999999999999
Q ss_pred --cccccccccCCCCCChHHHHHHHHHHHHHHHHhhhhhhCCcc--------cccchHHHHHHHHHHHHHHcCCCCCchh
Q 008135 127 --KINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKA--------FVENNSMYMYASDSYLNYIEGKDGDVDN 196 (576)
Q Consensus 127 --~i~ks~l~~~g~~h~wp~~l~~L~WLv~l~~~~~~~~~~~~~--------~~~~~~~~~y~~~~Y~~fl~g~d~~~~~ 196 (576)
.|+||+|+|+ +||+||.+||||||+|+|+...+.+-..... ..++..||+|++++|+.||.|+|++. +
T Consensus 176 l~sI~kSqlsAI-~ph~Wp~iLgMlhW~V~li~~~~~~~~~~~tl~qq~~~e~~Vek~lfdY~~~~Y~~fl~~~~~~~-~ 253 (622)
T COG5185 176 LESINKSQLSAI-GPHNWPKILGMLHWMVRLIIKLDMCLQPLKTLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYE-P 253 (622)
T ss_pred hhhhhHhHhhcc-CCcchHHHHHHHHHHHHHHHHHHHHHhhhchHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCccC-c
Confidence 9999999998 7899999999999999999865544322111 23557899999999999999999764 4
Q ss_pred hhHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 197 IDKGFIEKLEK-------EKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEK 269 (576)
Q Consensus 197 l~~~~~~kl~~-------~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~ 269 (576)
.+.+|...+.+ +++++..+...|.+.+.+.+.+ ...++.+++++.+|+.|..||++|+..|+.+..+|..
T Consensus 254 ~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~---s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g 330 (622)
T COG5185 254 SEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKI---SQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPG 330 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcch
Confidence 55555444443 4455555555555555554432 2478899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 008135 270 LVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFK 349 (576)
Q Consensus 270 ~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e 349 (576)
.+..++.+++.++.+++.|+..+.+|..+|..|++|+++++.|+.||.+|.+.|+...-+.+.|.+.+.+.+......++
T Consensus 331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~ 410 (622)
T COG5185 331 KLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFK 410 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccC--------CcceeEeeCCCCCCCccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 350 ELEALSMECNQAMKRLKL--------ATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQ 421 (576)
Q Consensus 350 ~le~l~~~yn~~~~kl~l--------~~d~~~~ln~~~~~~~ei~~~~~k~~ik~~L~~l~~ei~~~~~~~~~e~~~Lq~ 421 (576)
++++.+.+||.+...|++ +.|+.+.+|..+..| .+.++++.|++.+.+|++++.-+++......++|++
T Consensus 411 slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~---~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee 487 (622)
T COG5185 411 SLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFP---KGSGINESIKKSILELNDEIQERIKTEENKSITLEE 487 (622)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCc---cccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHH
Confidence 999999999999999987 578999999877666 478899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 008135 422 QSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKF 501 (576)
Q Consensus 422 ~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~~~~~~~ 501 (576)
.++.+...+.++...+..++.++....+.|...+++.+++.....+|+++|+.++..++-.+..-...+++.+...+-.+
T Consensus 488 ~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~l 567 (622)
T COG5185 488 DIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKL 567 (622)
T ss_pred HhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999987555544456778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 008135 502 QEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSE 553 (576)
Q Consensus 502 ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~ 553 (576)
+.+...++++|..+++++..+++.+.+||.+||..+++++-++-..++++..
T Consensus 568 d~~~~~~n~~r~~i~k~V~~v~~~~~~fk~~IQssledl~~~l~k~~~~l~~ 619 (622)
T COG5185 568 DELKVDLNRKRYKIHKQVIHVIDITSKFKINIQSSLEDLENELGKVIEELRN 619 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999888877777653
No 3
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=100.00 E-value=2.2e-37 Score=285.56 Aligned_cols=141 Identities=40% Similarity=0.643 Sum_probs=96.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhCCC---CCCCCCCCCCCHHHHHHHHHHH
Q 008135 23 GNRFGGSRDSDASFASSRPSSIGMGRASAADLYTDRSHQSSAIRAINAHLSSHSF---HIAFPLKQVPSVKDITDVIKFL 99 (576)
Q Consensus 23 ~~~~~~~r~s~~s~~~sr~s~~g~~~~~d~rpl~dk~~q~~~~~~i~~fL~~~~~---~~~~k~l~~pt~k~f~~i~~~L 99 (576)
+.+.||+|+|.+++.++++++.+ .||||++||+||++|++.|++||.++|| +++.+.|.+||.|||+.||+||
T Consensus 4 rss~~~~R~S~~~~~~~~~~~~~----~d~Rpl~Dk~~q~~~~~~I~~fL~~~~~~~~~is~k~l~~Pt~kdf~~I~~fL 79 (157)
T PF03801_consen 4 RSSVFGSRSSSASSSSSQPSSPQ----KDPRPLSDKSYQQECIRKIYEFLSEHGFESHPISPKTLKSPTQKDFVEIFNFL 79 (157)
T ss_dssp ---------------------------S--S-TT-HHHHHHHHHHHHHHHHHTT--SS---TTTTSS--HHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHcCCCCccccccccCCCCHHHHHHHHHHH
Confidence 34667788888866555554433 3799999999999999999999999999 5788999999999999999999
Q ss_pred HHcCCCCC--CcChHhHHHHHHHhcCCCC-cccccccccCCCCCChHHHHHHHHHHHHHHHHhhhhhhCCc
Q 008135 100 ISQLDYPS--TTKFEEDLFVVLKSLSCPF-KINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSK 167 (576)
Q Consensus 100 ~~~ld~~~--~~k~eeev~~~lk~l~yP~-~i~ks~l~~~g~~h~wp~~l~~L~WLv~l~~~~~~~~~~~~ 167 (576)
+++||+.+ ++++||||+.+||.||||| +|+||+|.|||+||+||++||+|+|||+|+.+.+.+.....
T Consensus 80 ~~~idp~~~~~~k~eeev~~~lK~L~YP~~~isKS~L~a~gs~hsWP~lL~~L~WLv~l~~~~~~~~~~~~ 150 (157)
T PF03801_consen 80 FRQIDPNFKFGKKFEEEVPFLLKALGYPFATISKSSLQAPGSPHSWPHLLGALHWLVELIKYEEELDSNSE 150 (157)
T ss_dssp HHTTSTT---SSTHHHHHHHHHHHTT-SS----HHHHHSTTSTTTHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHhCCCCCcCcCHHHHHHHHHHHhCCCccccCHHHccCCCCcccHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 99999654 7799999999999999999 99999999999999999999999999999999998876553
No 4
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.61 E-value=1.1e-11 Score=149.18 Aligned_cols=84 Identities=18% Similarity=0.271 Sum_probs=69.0
Q ss_pred HhHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008135 464 RCAEEAKKMEEDIQTEA-HNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNK 542 (576)
Q Consensus 464 ~~~~Ei~kl~eele~~~-~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~ 542 (576)
.+..++..++.+++.++ +|+.++ ++|+.++.+|..+. .++..+...+..+.+.|... +....
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~Ai-----ee~e~~~~r~~~l~----~~~~dl~~a~~~l~~~i~~~--------d~~~~ 1008 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLRAI-----EEYEEVEERYEELK----SQREDLEEAKEKLLEVIEEL--------DKEKR 1008 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChhHH-----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--------HHHHH
Confidence 45677888888888886 888888 99999999999988 77777777777777777777 44333
Q ss_pred -HHHHHHHHHHHHHhcccccccc
Q 008135 543 -GISETALTVSEAYKNSLPAQFS 564 (576)
Q Consensus 543 -~~~~~~~~i~~~f~~~~~~~~~ 564 (576)
.|+++|..||.+|..+|+.-||
T Consensus 1009 ~~f~~~f~~In~~F~~if~~L~~ 1031 (1163)
T COG1196 1009 ERFKETFDKINENFSEIFKELFG 1031 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 3999999999999999999988
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.53 E-value=9.8e-11 Score=142.03 Aligned_cols=83 Identities=14% Similarity=0.214 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008135 466 AEEAKKMEEDIQTEA-HNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGI 544 (576)
Q Consensus 466 ~~Ei~kl~eele~~~-~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~ 544 (576)
..++..+..+|..++ +|+.++ .+|..+..+|+.+. .....+...+..+.+.|.... ..+...|
T Consensus 957 ~~~l~~l~~~i~~l~~vN~~Ai-----~~~~~~~~~~~~l~----~q~~dl~~~~~~l~~~i~~l~-------~~~~~~f 1020 (1164)
T TIGR02169 957 QAELQRVEEEIRALEPVNMLAI-----QEYEEVLKRLDELK----EKRAKLEEERKAILERIEEYE-------KKKREVF 1020 (1164)
T ss_pred HHHHHHHHHHHHHcCCCChHHH-----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 334555555555554 566655 77777777777777 444445555555555444442 2234449
Q ss_pred HHHHHHHHHHHhcccccccc
Q 008135 545 SETALTVSEAYKNSLPAQFS 564 (576)
Q Consensus 545 ~~~~~~i~~~f~~~~~~~~~ 564 (576)
+++|..|+.+|..+|..-||
T Consensus 1021 ~~~f~~~~~~f~~~~~~l~~ 1040 (1164)
T TIGR02169 1021 MEAFEAINENFNEIFAELSG 1040 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999988874
No 6
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.37 E-value=1e-08 Score=124.11 Aligned_cols=304 Identities=20% Similarity=0.271 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 008135 239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIG-------KKVEEHKRICEENEEFKKRVKLQTINARDVER 311 (576)
Q Consensus 239 l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele-------~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r 311 (576)
.+.+...++..+...+..+..++..+.+++..+.++.++++ ..+....++..+.++|+.+++.|+-+......
T Consensus 1074 ke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e 1153 (1930)
T KOG0161|consen 1074 KESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLE 1153 (1930)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33344444444555555555555555555555555555554 44467778899999999999999777777777
Q ss_pred HHHHH----HHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-cceeEeeCCCCCCC
Q 008135 312 MRREL----QAVERDIAD----AENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLA-TEIQYSLNSNGSTP 382 (576)
Q Consensus 312 ~~~Er----~~L~~~l~~----~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~l~-~d~~~~ln~~~~~~ 382 (576)
++..+ ..+.+++++ .+..+..+++++.+.-..+..+++++...-.....-...+... .++...+......-
T Consensus 1154 ~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k 1233 (1930)
T KOG0161|consen 1154 LNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEK 1233 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 77443 566666654 3667777777776666666666666653322222111111110 11111111111000
Q ss_pred ccccchhhhhchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 383 SEVMGVDYKSTLKPALESF---ADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQ 459 (576)
Q Consensus 383 ~ei~~~~~k~~ik~~L~~l---~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~e 459 (576)
.+ .......+...|.++ .+++.+.+..+......+..++..+.+.+++.+..++++......+..+++.++.+++
T Consensus 1234 ~~--~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle 1311 (1930)
T KOG0161|consen 1234 KD--LEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLE 1311 (1930)
T ss_pred cc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 122223344455544 6667777778888899999999999999999999999999999999999999999999
Q ss_pred HHHHHh----------HHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 008135 460 EITKRC----------AEEAKKMEEDIQTE---AHNLDMVEREAVEVLKASESKFQEAIR----QCEEEIQIRALDLFAL 522 (576)
Q Consensus 460 ee~~~~----------~~Ei~kl~eele~~---~~~~~~~~~ea~~el~~~~~~~ee~~~----e~eeek~~l~~el~~l 522 (576)
++.... ..+...+.+.++.. +.++....++++.++.+|..++++... +.++.++.++..+..+
T Consensus 1312 ~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~ 1391 (1930)
T KOG0161|consen 1312 EETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQEL 1391 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 888733 23666666666664 255555668899999999999999333 6777888888877776
Q ss_pred HH----------HHHHHHHHHHHHHHHHhHHH
Q 008135 523 VD----------SVSKYKERMESKISKMNKGI 544 (576)
Q Consensus 523 ~~----------~i~k~K~~i~~~i~~~~~~~ 544 (576)
-+ .+++.+..++..+++...++
T Consensus 1392 qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~ 1423 (1930)
T KOG0161|consen 1392 EEQIEAANAKNASLEKAKNRLQQELEDLQLDL 1423 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 64 44677888888888866554
No 7
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=1e-06 Score=100.38 Aligned_cols=64 Identities=23% Similarity=0.263 Sum_probs=45.4
Q ss_pred HHHHHHcCCCCCCcChHh--HHHHHHHh--cCCCCccc--ccc-----cccCCCCCChHHHHHHHHHHHHHHHHh-hhhh
Q 008135 96 IKFLISQLDYPSTTKFEE--DLFVVLKS--LSCPFKIN--KST-----LRSPNSPHNWPAYLALIHWLVQIASYN-YHLT 163 (576)
Q Consensus 96 ~~~L~~~ld~~~~~k~ee--ev~~~lk~--l~yP~~i~--ks~-----l~~~g~~h~wp~~l~~L~WLv~l~~~~-~~~~ 163 (576)
+.-.+..|||.++++.++ +++.||+. |||.-+|. |-. +.++.+|.+.| .|.|||++. +.+.
T Consensus 636 IsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~i~tpenvP-------RLfDLv~~~d~~~r 708 (1293)
T KOG0996|consen 636 ISTACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAPITTPENVP-------RLFDLVKCKDEKFR 708 (1293)
T ss_pred HHHhccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCCCCCCCCcc-------hHhhhhccCCHHHH
Confidence 444788899999999988 89999998 55543333 333 66788888888 577777776 4444
Q ss_pred hCC
Q 008135 164 TNS 166 (576)
Q Consensus 164 ~~~ 166 (576)
...
T Consensus 709 ~aF 711 (1293)
T KOG0996|consen 709 PAF 711 (1293)
T ss_pred HHH
Confidence 433
No 8
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=1.7e-06 Score=97.15 Aligned_cols=80 Identities=19% Similarity=0.275 Sum_probs=52.8
Q ss_pred HhHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135 464 RCAEEAKKMEEDIQTEA--HNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMN 541 (576)
Q Consensus 464 ~~~~Ei~kl~eele~~~--~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~ 541 (576)
.+..++.+|.+..+.++ +|+..+ .-++.++.++- ++......|+++|.+|+.+|+.++
T Consensus 962 ~are~l~~Lq~k~~~l~k~vn~~~m-----~mle~~E~~~~---------------~lk~k~~~Ie~Dk~kI~ktI~~lD 1021 (1174)
T KOG0933|consen 962 EAREELKKLQEKKEKLEKTVNPKNM-----DMLERAEEKEA---------------ALKTKKEIIEKDKSKIKKTIEKLD 1021 (1174)
T ss_pred HHHHHHHHhhHHHHHHHhhcCHHHH-----HHHHHHHHHHH---------------HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44556666666666664 444433 44444444433 444556677778888888777766
Q ss_pred HH----HHHHHHHHHHHHhccccccc
Q 008135 542 KG----ISETALTVSEAYKNSLPAQF 563 (576)
Q Consensus 542 ~~----~~~~~~~i~~~f~~~~~~~~ 563 (576)
+. +.-|...||..|-.||+--+
T Consensus 1022 e~k~~~L~kaw~~VN~dFG~IFs~LL 1047 (1174)
T KOG0933|consen 1022 EKKREELNKAWEKVNKDFGSIFSTLL 1047 (1174)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhC
Confidence 43 88999999999999997544
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.01 E-value=6.5e-06 Score=100.19 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=19.8
Q ss_pred HhHHH---HHHHHHHHHHHhccccccccc
Q 008135 540 MNKGI---SETALTVSEAYKNSLPAQFSI 565 (576)
Q Consensus 540 ~~~~~---~~~~~~i~~~f~~~~~~~~~~ 565 (576)
+..-| +++|..|+++|..+|++-|+.
T Consensus 1023 ~~~~f~~~~~~F~~v~~~f~~~F~~lf~~ 1051 (1179)
T TIGR02168 1023 IEEIDREARERFKDTFDQVNENFQRVFPK 1051 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446 888888888888888888864
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.96 E-value=7.8e-06 Score=99.51 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=47.5
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccc
Q 008135 492 EVLKASE----SKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQF 563 (576)
Q Consensus 492 ~el~~~~----~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~ 563 (576)
++|..+. .+|+.+. .....|...+..+...|......+.........-|..++..++..|+.+|..-+
T Consensus 982 ee~~~~~~~a~er~~~l~----~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~~ 1053 (1179)
T TIGR02168 982 KELGPVNLAAIEEYEELK----ERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKLF 1053 (1179)
T ss_pred HHcCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555 5565555 556666666666666666666666666666666699999999999999998654
No 11
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.77 E-value=1.3e-09 Score=126.76 Aligned_cols=304 Identities=20% Similarity=0.306 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCHH
Q 008135 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKV-------EEHKRICEENEEFKKRVKLQTINAR 307 (576)
Q Consensus 235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~-------~e~~~l~~e~~eL~~~l~~Q~~s~~ 307 (576)
.+...+.++..+...+..-++.+..++..+.+++..|.+++++|++.. ....+|..++.+|...+...+.++.
T Consensus 12 ~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~ 91 (859)
T PF01576_consen 12 QLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQ 91 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence 444555677778888888888999999999999999999999998654 4556899999999999999998888
Q ss_pred HHHHHHHHH----HHHHHHHHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CcceeEeeCCC
Q 008135 308 DVERMRREL----QAVERDIADA----ENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKL-ATEIQYSLNSN 378 (576)
Q Consensus 308 di~r~~~Er----~~L~~~l~~~----e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~l-~~d~~~~ln~~ 378 (576)
....+++.| ..|+++|++. +..+..+.+++.+.-..+...++.+.+.-. ++.. ...++.++++.
T Consensus 92 aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~-------~lEK~k~~l~~e~~dL 164 (859)
T PF01576_consen 92 AQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKA-------KLEKEKSQLEAELDDL 164 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHH
Confidence 888887665 6788888643 567778888877766667767766666532 2221 23344444433
Q ss_pred CCCCcccc-----chhhhhchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008135 379 GSTPSEVM-----GVDYKSTLKPALESF---ADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQ 450 (576)
Q Consensus 379 ~~~~~ei~-----~~~~k~~ik~~L~~l---~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~q 450 (576)
....+.+. .......+...|..+ .++..+.+.++.....+|+.+++++...+++.+..+..|......+.++
T Consensus 165 ~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~q 244 (859)
T PF01576_consen 165 QAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQ 244 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222222 223334556666666 6667888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh----------HHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHH
Q 008135 451 LNLLSKETQEITKRC----------AEEAKKMEEDIQTE---AHNLDMVEREAVEVLKASESKFQEA-IR---QCEEEIQ 513 (576)
Q Consensus 451 l~~lk~e~eee~~~~----------~~Ei~kl~eele~~---~~~~~~~~~ea~~el~~~~~~~ee~-~~---e~eeek~ 513 (576)
++.++..++++.... ..+++.+++.++.. +.++....+.++.++..|+.+|+.- .. ++++.++
T Consensus 245 Leelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKK 324 (859)
T PF01576_consen 245 LEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKK 324 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999998887622 23566666666654 2455545578899999999999993 33 6788899
Q ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHhHHHH
Q 008135 514 IRALDLFALVD----------SVSKYKERMESKISKMNKGIS 545 (576)
Q Consensus 514 ~l~~el~~l~~----------~i~k~K~~i~~~i~~~~~~~~ 545 (576)
++..+|..+-+ .+.+.|.++++.++++..++=
T Consensus 325 kL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe 366 (859)
T PF01576_consen 325 KLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELE 366 (859)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888874 447778889999988776543
No 12
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=0.00067 Score=73.05 Aligned_cols=112 Identities=15% Similarity=0.130 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008135 411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREA 490 (576)
Q Consensus 411 ~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea 490 (576)
++.+++...+..+..+...+.++...++.+...+..++.++..+....+........+-.+.+.+++.+..+++......
T Consensus 429 ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~ 508 (581)
T KOG0995|consen 429 EISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVL 508 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555666666666666666665555555555555555544444444444555555555544444443444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 491 VEVLKASESKFQEAIRQCEEEIQIRALDLFAL 522 (576)
Q Consensus 491 ~~el~~~~~~~ee~~~e~eeek~~l~~el~~l 522 (576)
+..+.......+....++++-..++..++..+
T Consensus 509 ~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki 540 (581)
T KOG0995|consen 509 NTSMKEAEELVKSIELELDRMVATGEEERQKI 540 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555545555444444444444
No 13
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.70 E-value=0.00059 Score=70.83 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008135 415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEA 480 (576)
Q Consensus 415 e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~ 480 (576)
.+..++.++..+...+.....++..|+.+...|+.++..+...+..+...+...+..++.++..++
T Consensus 210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~ 275 (312)
T PF00038_consen 210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELR 275 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 344445555555555555555555555555555555555555555555555555555555555544
No 14
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.65 E-value=0.00051 Score=76.74 Aligned_cols=177 Identities=16% Similarity=0.206 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135 257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESK 336 (576)
Q Consensus 257 i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~ 336 (576)
.++++.-..++-.....++.+|...+.+.++++.-.++++..+++-. +.|+-..-+++-.+...+.++..+..+.++
T Consensus 264 leqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~a---d~iEmaTldKEmAEERaesLQ~eve~lkEr 340 (1243)
T KOG0971|consen 264 LEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTA---DAIEMATLDKEMAEERAESLQQEVEALKER 340 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555556666666555555666555555555555432 223333333333333344445555555555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcceeEeeCCCCCCCcccc-chhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 008135 337 TWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVM-GVDYKSTLKPALESFADDVKRSSVEKLEE 415 (576)
Q Consensus 337 ~~~~e~~l~~~~e~le~l~~~yn~~~~kl~l~~d~~~~ln~~~~~~~ei~-~~~~k~~ik~~L~~l~~ei~~~~~~~~~e 415 (576)
+.+++..+.=...+++.. |.|- .+.+.-++. -..+...+|.+|.+|++-....-. .
T Consensus 341 ~deletdlEILKaEmeek-------------G~~~------~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~----d 397 (1243)
T KOG0971|consen 341 VDELETDLEILKAEMEEK-------------GSDG------QAASSYQFKQLEQQNARLKDALVRLRDLSASEKQ----D 397 (1243)
T ss_pred HHHHHHHHHHHHHHHHhc-------------CCCC------cccchHHHHHHHHHHHHHHHHHHHHHhcchHHHH----H
Confidence 555555444344444333 2111 001111111 233445677777777654432111 2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQ 459 (576)
Q Consensus 416 ~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~e 459 (576)
..+++++++..+..+++.+..-..|..+++.+++.+..+++.++
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22444555555555555555555555555555555555555443
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=0.0004 Score=85.42 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhHHH-HHHHHHHHHHHhccc
Q 008135 528 KYKERMESKISKMNKGI-SETALTVSEAYKNSL 559 (576)
Q Consensus 528 k~K~~i~~~i~~~~~~~-~~~~~~i~~~f~~~~ 559 (576)
.-+..++..|..+..++ -..|..+.+.|+..+
T Consensus 1075 g~~k~le~qi~~l~~eL~e~~yk~a~~ryrka~ 1107 (1311)
T TIGR00606 1075 GRQKGYEKEIKHFKKELREPQFRDAEEKYREMM 1107 (1311)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 44455555555555555 245666666666543
No 16
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.61 E-value=0.00095 Score=82.24 Aligned_cols=122 Identities=13% Similarity=0.238 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHH
Q 008135 405 VKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITK----------RCAEEAKKMEE 474 (576)
Q Consensus 405 i~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~----------~~~~Ei~kl~e 474 (576)
.+..+..+...+..|+.++.++...++.-++..+.++.+.+.+...|+.+..++++... ....++.++++
T Consensus 1088 e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~ 1167 (1930)
T KOG0161|consen 1088 EQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRR 1167 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666677777777777777777777777777777777777766633 22235566666
Q ss_pred HHHHHH----hhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 008135 475 DIQTEA----HNLDMVEREAVEVLKASESKFQEAI---RQCEEEIQIRALDLFALVDSV 526 (576)
Q Consensus 475 ele~~~----~~~~~~~~ea~~el~~~~~~~ee~~---~e~eeek~~l~~el~~l~~~i 526 (576)
.++... ..+..+...-...+..+..+++.+. +.++.++..+..++..+...|
T Consensus 1168 ~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev 1226 (1930)
T KOG0161|consen 1168 DLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAEL 1226 (1930)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666543 1122222333344444444444432 355566666666666666444
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=0.0024 Score=78.77 Aligned_cols=20 Identities=5% Similarity=0.129 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhcccccccc
Q 008135 545 SETALTVSEAYKNSLPAQFS 564 (576)
Q Consensus 545 ~~~~~~i~~~f~~~~~~~~~ 564 (576)
...+.+||..-++++..-|+
T Consensus 1136 ~~~~~~~n~~~~~~w~~~~~ 1155 (1311)
T TIGR00606 1136 SMKMEEINKIIRDLWRSTYR 1155 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 34556666666666666554
No 18
>PRK02224 chromosome segregation protein; Provisional
Probab=98.57 E-value=0.0049 Score=73.17 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008135 237 EKLEKEKCVLEEDLNKF 253 (576)
Q Consensus 237 ~~l~~~~~~L~~D~~K~ 253 (576)
..++..+..+..++..+
T Consensus 380 ~~~~~~l~~l~~el~el 396 (880)
T PRK02224 380 EDRREEIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444433
No 19
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.55 E-value=0.0026 Score=69.23 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 510 EEIQIRALDLFALVDSVSKYKERMESKI 537 (576)
Q Consensus 510 eek~~l~~el~~l~~~i~k~K~~i~~~i 537 (576)
.+|..+..+-++|++.|.....++...-
T Consensus 431 kEKEql~~EkQeL~~yi~~Le~r~~~~~ 458 (546)
T PF07888_consen 431 KEKEQLQEEKQELLEYIERLEQRLDKVA 458 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666677777777777766655555443
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.55 E-value=0.0021 Score=78.23 Aligned_cols=75 Identities=11% Similarity=0.019 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcCh--HhHHHHHHHh--cCCCCcccccccccCCCCCChHHHHHHHHHHHHHHHHhhhhhh
Q 008135 89 VKDITDVIKFLISQLDYPSTTKF--EEDLFVVLKS--LSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTT 164 (576)
Q Consensus 89 ~k~f~~i~~~L~~~ld~~~~~k~--eeev~~~lk~--l~yP~~i~ks~l~~~g~~h~wp~~l~~L~WLv~l~~~~~~~~~ 164 (576)
.+--..|...|+..+++.++.+. ...++.+||. +|++-+|+.+.+.+...... +...|+++.++++|.|++.+..
T Consensus 529 ~~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~-~~~~g~~~~a~dli~~d~~~~~ 607 (1163)
T COG1196 529 EKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKS-DAAPGFLGLASDLIDFDPKYEP 607 (1163)
T ss_pred hHHHHHHHHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhcccccccc-ccccchhHHHHHHhcCCHHHHH
Confidence 34455678888889998886664 4489999996 78888888887754322111 1157888999999999976554
No 21
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.50 E-value=0.0049 Score=69.68 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008135 241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGK-------KVEEHKRICEENEEFKKRVKLQTINARDVERMR 313 (576)
Q Consensus 241 ~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~-------~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~ 313 (576)
.......++.+.+......+......++.....|..|+.. .-.+...|+.|+-.|+++|..-.-|--+++-|+
T Consensus 48 ~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~K 127 (717)
T PF09730_consen 48 QELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLK 127 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3333444444444444444444444444444444444432 225566888999999999999988999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 008135 314 RELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEA 353 (576)
Q Consensus 314 ~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~ 353 (576)
+|+..|..+++-+..+++++..-..-.+..+...++.|..
T Consensus 128 hei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~ 167 (717)
T PF09730_consen 128 HEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKS 167 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888877776666655444444444444444433
No 22
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.48 E-value=0.01 Score=72.54 Aligned_cols=71 Identities=10% Similarity=0.044 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCCCCCcChHh--HHHHHHHh--cCCCCcccccccccCCCCCChHHHHHHHHHHHHHHHHhhhhh
Q 008135 93 TDVIKFLISQLDYPSTTKFEE--DLFVVLKS--LSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLT 163 (576)
Q Consensus 93 ~~i~~~L~~~ld~~~~~k~ee--ev~~~lk~--l~yP~~i~ks~l~~~g~~h~wp~~l~~L~WLv~l~~~~~~~~ 163 (576)
..|...|+..+++.++...++ .++.+||. +|...+|+.+.+.+...+...|...|.++|+++++.|++.+.
T Consensus 539 ~Aie~~lg~~l~~ivv~~~~~a~~~i~~l~~~~~gr~tflpl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 613 (1164)
T TIGR02169 539 TAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYE 613 (1164)
T ss_pred HHHHHHhhhhhCCEEECCHHHHHHHHHHHHhcCCCCeeeccHhhcCCCCCCcccccCCCchHHHHHHccCcHHHH
Confidence 456778888888888777666 89999996 565555555555321111112333577788889988876554
No 23
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.47 E-value=0.00029 Score=76.53 Aligned_cols=73 Identities=26% Similarity=0.284 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhh
Q 008135 412 KLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLD 484 (576)
Q Consensus 412 ~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~ 484 (576)
..+++..+...++.+...+.+.+..+..|..++..|..+++...+..+.....+.+++.+|++++..+-++++
T Consensus 294 ~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq 366 (546)
T KOG0977|consen 294 AREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQ 366 (546)
T ss_pred HHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3477888888888888888888888888999999999888888888888888888888888888888654443
No 24
>PRK02224 chromosome segregation protein; Provisional
Probab=98.47 E-value=0.007 Score=71.89 Aligned_cols=13 Identities=31% Similarity=0.307 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 008135 350 ELEALSMECNQAM 362 (576)
Q Consensus 350 ~le~l~~~yn~~~ 362 (576)
.++..+..|...+
T Consensus 430 ~~~~~~~~~~~~l 442 (880)
T PRK02224 430 ELEATLRTARERV 442 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444333
No 25
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.46 E-value=0.0026 Score=71.58 Aligned_cols=37 Identities=14% Similarity=0.362 Sum_probs=23.4
Q ss_pred HhHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHH
Q 008135 464 RCAEEAKKMEEDIQTEAHNLDMVEREAVE-VLKASESKFQEAI 505 (576)
Q Consensus 464 ~~~~Ei~kl~eele~~~~~~~~~~~ea~~-el~~~~~~~ee~~ 505 (576)
.+..++..+..+++.-.+||.++ + +|..+..+++.+.
T Consensus 452 ~~~~~i~~l~~~L~~g~VNm~ai-----~~e~~e~~~~~~~L~ 489 (569)
T PRK04778 452 EVSDEIEALAEELEEKPINMEAV-----NRLLEEATEDVETLE 489 (569)
T ss_pred HHHHHHHHHHHHhccCCCCHHHH-----HHHHHHHHHHHHHHH
Confidence 44556666777776633777766 4 6666666666655
No 26
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.44 E-value=0.0038 Score=75.93 Aligned_cols=127 Identities=20% Similarity=0.233 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 008135 419 LQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQE-ITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKAS 497 (576)
Q Consensus 419 Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~ee-e~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~~~ 497 (576)
+..++..+...+++....-++++.....+..++...+++.+. -......++..+.+.+...-+.........+..-+.|
T Consensus 1413 ~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k~~~~~~~e~~~~~i~~~~e~~~~~~~~~~~~~~~le~~k~e~ 1492 (1822)
T KOG4674|consen 1413 LSEELESLKEELEELQQLQATLQSETEAITKELFEAKKEEEKSTTERLLEEIKKLLETVRKKTVDADSKSENLEGTKKEL 1492 (1822)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 556777777777777677777777777777777777776665 3334444555555555443322222212222333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 008135 498 ESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALT 550 (576)
Q Consensus 498 ~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~ 550 (576)
..-++++. ..+..+..+...+-.++.+-. .++..|.++...|-.++.+
T Consensus 1493 ~~e~e~~~----~~~~~~~~E~lk~r~Rl~~ee-q~~~~I~rl~~eLe~~~~~ 1540 (1822)
T KOG4674|consen 1493 ESEKEELK----QRLTELAAENLKLRSRLAKEE-QYQKEISRLKEELESTKEA 1540 (1822)
T ss_pred hhhHHHHH----HHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHHHHHHHHH
Confidence 44444433 333333344444444443333 4444555444444444333
No 27
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.42 E-value=0.0032 Score=71.37 Aligned_cols=231 Identities=12% Similarity=0.129 Sum_probs=112.1
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCCcChHh---HHHHHHHh--cCCCCcccccccccCCC
Q 008135 64 AIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEE---DLFVVLKS--LSCPFKINKSTLRSPNS 138 (576)
Q Consensus 64 ~~~~i~~fL~~~~~~~~~k~l~~pt~k~f~~i~~~L~~~ld~~~~~k~ee---ev~~~lk~--l~yP~~i~ks~l~~~g~ 138 (576)
.++.|++-+..+||-..+-.|.. -...|...+......--++++-.-++ -|+.-|.. +|...+++.+.|.++.
T Consensus 511 ~v~~I~e~~k~ngv~G~v~eL~~-v~~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~r~- 588 (1200)
T KOG0964|consen 511 SVRKIKEELKPNGVFGTVYELIK-VPNKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKARD- 588 (1200)
T ss_pred HHHHHHHHhcccccceehhhhhc-CCHHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCchhh-
Confidence 45666666655665322211110 01134444444443322332222233 45555554 3554444444443422
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhhhhCCcc----cccchH--HHHHHHHHHHH---HHcCCC-CCchhhhHHHHHH----
Q 008135 139 PHNWPAYLALIHWLVQIASYNYHLTTNSKA----FVENNS--MYMYASDSYLN---YIEGKD-GDVDNIDKGFIEK---- 204 (576)
Q Consensus 139 ~h~wp~~l~~L~WLv~l~~~~~~~~~~~~~----~~~~~~--~~~y~~~~Y~~---fl~g~d-~~~~~l~~~~~~k---- 204 (576)
..+|.-..++ -|+.-++|++.++....+ +.+... -..++.+.|.. =|.|+. +--+.|.++|.++
T Consensus 589 -v~yp~~sdai-Pli~kl~y~p~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~krsr 666 (1200)
T KOG0964|consen 589 -VEYPKDSDAI-PLISKLRYEPQFDKALKHVFGKTIVCRDLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYEDQKRSR 666 (1200)
T ss_pred -ccCCCCCCcc-chHHHhCcchhhHHHHHHHhCceEEeccHHHHHHHHHhcCCCeEEeccceecccCCccccchhhhhhH
Confidence 1344444443 456666777665543222 111111 22344444432 156665 2336788888754
Q ss_pred HH--HHHHhHHHHHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 205 LE--KEKENVSEYVEELKKKVSEMEG-AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKK 281 (576)
Q Consensus 205 l~--~~~~~~~~~~~~L~~~~~~le~-l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~ 281 (576)
|. +.+.....++..|++.+.++.. +..-...++.+......++.|...|..-+..+...+.....+...++..++.+
T Consensus 667 Le~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k 746 (1200)
T KOG0964|consen 667 LELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPK 746 (1200)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH
Confidence 22 2333344455666666665554 22222355566666666666666666666666666655556666666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008135 282 VEEHKRICEENEEFKKR 298 (576)
Q Consensus 282 ~~e~~~l~~e~~eL~~~ 298 (576)
...++.+...+..+..+
T Consensus 747 ~~~Le~i~~~l~~~~~~ 763 (1200)
T KOG0964|consen 747 GKELEEIKTSLHKLESQ 763 (1200)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666555555444443
No 28
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.41 E-value=0.015 Score=71.10 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008135 281 KVEEHKRICEENEEFKKRVKLQTINARDVERMRRE 315 (576)
Q Consensus 281 ~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~E 315 (576)
...+...+..++.+++.++....++++..+.+..-
T Consensus 440 ~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~ 474 (1201)
T PF12128_consen 440 LQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQA 474 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHH
Confidence 34555667777888888888888888877776633
No 29
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=0.0042 Score=71.32 Aligned_cols=71 Identities=14% Similarity=0.002 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhhCCCCCCC---CCCCCCCHHHHHHH-HHHHHHcCCCCCC--cChHhHHHHHHHhcCCCC--ccccccc
Q 008135 62 SSAIRAINAHLSSHSFHIAF---PLKQVPSVKDITDV-IKFLISQLDYPST--TKFEEDLFVVLKSLSCPF--KINKSTL 133 (576)
Q Consensus 62 ~~~~~~i~~fL~~~~~~~~~---k~l~~pt~k~f~~i-~~~L~~~ld~~~~--~k~eeev~~~lk~l~yP~--~i~ks~l 133 (576)
.+..+..++-|. .-||-.. -.|-.||.+-|-.. -..|+.+.|..++ .+.--+++.++|.-.+|- +|+..++
T Consensus 487 ~~~~~eave~lK-r~fPgv~GrviDLc~pt~kkyeiAvt~~Lgk~~daIiVdte~ta~~CI~ylKeqr~~~~TFlPld~i 565 (1141)
T KOG0018|consen 487 RSRKQEAVEALK-RLFPGVYGRVIDLCQPTQKKYEIAVTVVLGKNMDAIIVDTEATARDCIQYLKEQRLEPMTFLPLDSI 565 (1141)
T ss_pred HHHHHHHHHHHH-HhCCCccchhhhcccccHHHHHHHHHHHHhcccceEEeccHHHHHHHHHHHHHhccCCccccchhhh
Confidence 445566666662 3466433 23458997655444 5667778887663 444559999999977654 6666655
No 30
>PRK03918 chromosome segregation protein; Provisional
Probab=98.29 E-value=0.022 Score=67.69 Aligned_cols=9 Identities=11% Similarity=0.593 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 008135 149 IHWLVQIAS 157 (576)
Q Consensus 149 L~WLv~l~~ 157 (576)
-.|+..++.
T Consensus 114 ~~~i~~~~~ 122 (880)
T PRK03918 114 REWVERLIP 122 (880)
T ss_pred HHHHHHhcC
Confidence 345555443
No 31
>PRK11637 AmiB activator; Provisional
Probab=98.15 E-value=0.0064 Score=66.02 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135 411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHIN 445 (576)
Q Consensus 411 ~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~ 445 (576)
.+.+++.....++......++....++..+...+.
T Consensus 170 ~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~ 204 (428)
T PRK11637 170 ETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQ 204 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333433333333333333333333333
No 32
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.12 E-value=0.037 Score=63.62 Aligned_cols=214 Identities=16% Similarity=0.221 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008135 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRR 314 (576)
Q Consensus 235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~ 314 (576)
+++++......+..++..++.-+...+.+...|+..+..+..+|+.+...+......+..++. +..++..
T Consensus 309 ~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qe----------E~~~~~~ 378 (775)
T PF10174_consen 309 RLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQE----------EKSRLQG 378 (775)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Confidence 555566666666666777766666667777777777777777766666666666655555533 3444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcceeEeeCCCCCCCccccchhhhhch
Q 008135 315 ELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTL 394 (576)
Q Consensus 315 Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~l~~d~~~~ln~~~~~~~ei~~~~~k~~i 394 (576)
|+..+...++..+..+..|+.++.+++-.+...-..+..... +|. +.|+..-.......+
T Consensus 379 Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~-------Rl~-------------~~~d~~~~~~~~~~l 438 (775)
T PF10174_consen 379 EIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKE-------RLS-------------SQADSSNEDEALETL 438 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHh-------------ccccccchHHHHHHH
Confidence 445555555555555555555544444444333333333321 111 012211222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHH
Q 008135 395 KPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITK---RCAEEAKK 471 (576)
Q Consensus 395 k~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~---~~~~Ei~k 471 (576)
..++...-.-+...-......-....++++.....+.+.+..+..|+..+.+...++..++.++..-.. +..++++.
T Consensus 439 Eea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~ 518 (775)
T PF10174_consen 439 EEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIER 518 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHH
Confidence 333332211111100001111234456777778888888888888888888888888888776654443 22234444
Q ss_pred HHHHHHH
Q 008135 472 MEEDIQT 478 (576)
Q Consensus 472 l~eele~ 478 (576)
+.-.++.
T Consensus 519 l~I~lEk 525 (775)
T PF10174_consen 519 LEIELEK 525 (775)
T ss_pred HHHHHHH
Confidence 4444443
No 33
>PRK03918 chromosome segregation protein; Provisional
Probab=98.11 E-value=0.048 Score=64.76 Aligned_cols=12 Identities=33% Similarity=0.271 Sum_probs=5.2
Q ss_pred CCCCCCCCCCCC
Q 008135 22 GGNRFGGSRDSD 33 (576)
Q Consensus 22 ~~~~~~~~r~s~ 33 (576)
|.+..+|+..||
T Consensus 24 g~~~i~G~nG~G 35 (880)
T PRK03918 24 GINLIIGQNGSG 35 (880)
T ss_pred CcEEEEcCCCCC
Confidence 333444444444
No 34
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.11 E-value=0.01 Score=68.60 Aligned_cols=74 Identities=14% Similarity=0.229 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 259 ELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWES 335 (576)
Q Consensus 259 ~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~ 335 (576)
.+...+...+.++..+++.++.....++.+.....+.+.+++.- .++++.+..|++.+..+++.+.....+++.
T Consensus 285 ~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~---~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~ 358 (1074)
T KOG0250|consen 285 NQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGEL---KDEVDAQDEEIEEARKDLDDLRREVNDLKE 358 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433443333333333333322 223334444444444444444443333333
No 35
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=0.042 Score=62.67 Aligned_cols=26 Identities=23% Similarity=0.338 Sum_probs=16.9
Q ss_pred CCCCcChH--hHHHHHHHhcCC----CCcccc
Q 008135 105 YPSTTKFE--EDLFVVLKSLSC----PFKINK 130 (576)
Q Consensus 105 ~~~~~k~e--eev~~~lk~l~y----P~~i~k 130 (576)
|.+.++.. .||+.+|-.-|+ ||.|.+
T Consensus 109 Y~lD~k~Vtk~evvnLLESAGFSrsNPYyIV~ 140 (1200)
T KOG0964|consen 109 YFLDNKMVTKGEVVNLLESAGFSRSNPYYIVP 140 (1200)
T ss_pred hhcccccccHHHHHHHHHhcCcccCCCceEee
Confidence 44444443 489999999775 775543
No 36
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.05 E-value=0.018 Score=64.71 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 008135 491 VEVLKASESKFQEAI 505 (576)
Q Consensus 491 ~~el~~~~~~~ee~~ 505 (576)
+.++..+..++.++.
T Consensus 378 ~~~l~~l~~~l~~~~ 392 (562)
T PHA02562 378 AEELAKLQDELDKIV 392 (562)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555554
No 37
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.00 E-value=0.028 Score=58.27 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=16.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHh
Q 008135 204 KLEKEKENVSEYVEELKKKVSEMEG 228 (576)
Q Consensus 204 kl~~~~~~~~~~~~~L~~~~~~le~ 228 (576)
.|+..++++.+.+..|+.+...|+.
T Consensus 8 ~LNdRla~YIekVr~LE~~N~~Le~ 32 (312)
T PF00038_consen 8 SLNDRLASYIEKVRFLEQENKRLES 32 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 4556666666677777766666664
No 38
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.95 E-value=0.016 Score=71.31 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 008135 318 AVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK 366 (576)
Q Consensus 318 ~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~ 366 (576)
.|...++.......++..+..+++..+......++.+-..|+.++.-.|
T Consensus 439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~G 487 (1486)
T PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAG 487 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444445555556666666666666666666666666666666655433
No 39
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.06 Score=59.95 Aligned_cols=49 Identities=8% Similarity=0.142 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008135 306 ARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354 (576)
Q Consensus 306 ~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l 354 (576)
.++|-.+|.....|...++.+..++.+|..++.|....+++...+++.+
T Consensus 429 qe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~ 477 (1118)
T KOG1029|consen 429 QEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEV 477 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHh
Confidence 3444445555555555566666666666666666665555555555544
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.93 E-value=0.057 Score=59.13 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHh
Q 008135 519 LFALVDSVSKYKERMESKISKMNKG---ISETALTVSEAYK 556 (576)
Q Consensus 519 l~~l~~~i~k~K~~i~~~i~~~~~~---~~~~~~~i~~~f~ 556 (576)
+...+..+.+-|+.++.+-.++..+ |-..+..+++.+.
T Consensus 422 lks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~ 462 (546)
T PF07888_consen 422 LKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKW 462 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4444455566677777766665544 5556666666554
No 41
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=0.09 Score=60.37 Aligned_cols=106 Identities=17% Similarity=0.255 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhhhhhhCCc-----ccc------cchHHHHHHHHHHHHHHcCCC-CCchhhhHHHHH-------HHHH
Q 008135 147 ALIHWLVQIASYNYHLTTNSK-----AFV------ENNSMYMYASDSYLNYIEGKD-GDVDNIDKGFIE-------KLEK 207 (576)
Q Consensus 147 ~~L~WLv~l~~~~~~~~~~~~-----~~~------~~~~~~~y~~~~Y~~fl~g~d-~~~~~l~~~~~~-------kl~~ 207 (576)
+-..|+++||.|++.+...-. .|+ .-.+.|+.-+.|=..=+.||. |..+.|.++... +|.
T Consensus 599 ~~v~~al~Li~yd~~l~~amefvFG~tlVc~~~d~AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~- 677 (1174)
T KOG0933|consen 599 DNVELALSLIGYDDELKKAMEFVFGSTLVCDSLDVAKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQ- 677 (1174)
T ss_pred chHHHHHHHhcCCHHHHHHHHHHhCceEEecCHHHHHHhhcccccccceeeecCceeCCCCcccCCCCCCcccHHHHHH-
Confidence 445899999999988765321 111 123456666666445577876 455566655431 111
Q ss_pred HHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 208 EKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEK 266 (576)
Q Consensus 208 ~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~ 266 (576)
.+....-+++..+. .++.++.+++.|+.--.||..+-.+++-+..+
T Consensus 678 ~l~~~~~~~~~~q~-------------el~~le~eL~~le~~~~kf~~l~~ql~l~~~~ 723 (1174)
T KOG0933|consen 678 KLKQAQKELRAIQK-------------ELEALERELKSLEAQSQKFRDLKQQLELKLHE 723 (1174)
T ss_pred HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122222222 33444455555666666666666665554443
No 42
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.89 E-value=0.09 Score=60.28 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 398 LESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGK--RKRIDALQFHINEMETQLNLLSKET 458 (576)
Q Consensus 398 L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek--~~~l~~Le~kl~~l~~ql~~lk~e~ 458 (576)
+..+.......+..+.+++..++.+++.+...+... ...+..+..++..++..+..+..++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~ 444 (650)
T TIGR03185 382 IQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEI 444 (650)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334455666667777777777777777642 3455666666665555555554433
No 43
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.86 E-value=0.094 Score=59.43 Aligned_cols=53 Identities=11% Similarity=0.267 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008135 252 KFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTI 304 (576)
Q Consensus 252 K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~ 304 (576)
..+.+...+..++..++++|..-..|.+....-.++...+..++...|+--.+
T Consensus 266 qlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTl 318 (1243)
T KOG0971|consen 266 QLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATL 318 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444455555555555444444333334444444555554444443
No 44
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.69 E-value=0.2 Score=58.39 Aligned_cols=17 Identities=0% Similarity=0.032 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhcc
Q 008135 542 KGISETALTVSEAYKNS 558 (576)
Q Consensus 542 ~~~~~~~~~i~~~f~~~ 558 (576)
..+-+.+.+|...|...
T Consensus 475 ~~m~~lL~~I~r~~~~f 491 (1074)
T KOG0250|consen 475 PNMPQLLRAIERRKRRF 491 (1074)
T ss_pred hhhHHHHHHHHHHHhcC
Confidence 34778888888887654
No 45
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.68 E-value=0.3 Score=60.23 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 490 AVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSV 526 (576)
Q Consensus 490 a~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i 526 (576)
..+-+..+...|++....++.....++.++..+...+
T Consensus 938 ~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~l 974 (1822)
T KOG4674|consen 938 LEQSLESVKSELDETRLELEAKIESLHKKITSLEEEL 974 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4445666777777766666666666666655555444
No 46
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.68 E-value=0.14 Score=56.25 Aligned_cols=92 Identities=16% Similarity=0.100 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-
Q 008135 468 EAKKMEEDIQTEAHN---LDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKG- 543 (576)
Q Consensus 468 Ei~kl~eele~~~~~---~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~- 543 (576)
.....++++...... +....++.+..-..+..+.+++.-++++.++.-...|......|.+.++.++.-+.++..-
T Consensus 290 ~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~Ll 369 (546)
T KOG0977|consen 290 EQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLL 369 (546)
T ss_pred hhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344555554322 2222233333344555666666666666777777777777777777777777766665533
Q ss_pred -HHHHHHHHHHHHhccc
Q 008135 544 -ISETALTVSEAYKNSL 559 (576)
Q Consensus 544 -~~~~~~~i~~~f~~~~ 559 (576)
.--+++.=-..|+..+
T Consensus 370 D~ki~Ld~EI~~YRkLL 386 (546)
T KOG0977|consen 370 DTKISLDAEIAAYRKLL 386 (546)
T ss_pred chHhHHHhHHHHHHHHh
Confidence 4455555555666554
No 47
>PRK11637 AmiB activator; Provisional
Probab=97.61 E-value=0.16 Score=55.17 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135 417 ISLQQQSSEMAAKIEGKRKRIDALQFHIN 445 (576)
Q Consensus 417 ~~Lq~~l~~l~~~ieek~~~l~~Le~kl~ 445 (576)
..++.+..++...+.+.+.+...|+....
T Consensus 187 ~~le~~~~~l~~~~~e~~~~k~~L~~~k~ 215 (428)
T PRK11637 187 AELEEKQSQQKTLLYEQQAQQQKLEQARN 215 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 48
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.57 E-value=0.1 Score=51.90 Aligned_cols=38 Identities=26% Similarity=0.272 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 492 EVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERM 533 (576)
Q Consensus 492 ~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i 533 (576)
..|+.++.+++.+. .....|...+..+.+.+...|.+.
T Consensus 183 ~~lkeaE~Rae~aE----~~v~~Le~~id~le~eL~~~k~~~ 220 (237)
T PF00261_consen 183 EKLKEAENRAEFAE----RRVKKLEKEIDRLEDELEKEKEKY 220 (237)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666655 455666666666666666555443
No 49
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.54 E-value=0.25 Score=55.42 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKERE 277 (576)
Q Consensus 236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~E 277 (576)
+-.|+.++..++..++++++-+..++....+.+.+|.++..+
T Consensus 108 iriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~sr 149 (1265)
T KOG0976|consen 108 IRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSR 149 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 334444444444455555555444444444444444433333
No 50
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.51 E-value=0.37 Score=56.70 Aligned_cols=12 Identities=0% Similarity=-0.186 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH
Q 008135 175 MYMYASDSYLNY 186 (576)
Q Consensus 175 ~~~y~~~~Y~~f 186 (576)
|.+|...++..+
T Consensus 397 FIGfTy~~~~~~ 408 (1317)
T KOG0612|consen 397 FIGFTYTHESLL 408 (1317)
T ss_pred eeeeeeccchhh
Confidence 666665554444
No 51
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.48 E-value=0.17 Score=52.83 Aligned_cols=129 Identities=17% Similarity=0.271 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHH----HH
Q 008135 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRI-CEENEEFKKRVKLQTINAR----DV 309 (576)
Q Consensus 235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l-~~e~~eL~~~l~~Q~~s~~----di 309 (576)
.+..|+...+.|..++..+..++..+..+...+..++..++.-... +..+ ..+++.++..+..+....+ ++
T Consensus 157 ~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e----~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l 232 (325)
T PF08317_consen 157 NLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE----IESCDQEELEALRQELAEQKEEIEAKKKEL 232 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555544332221 1111 1333444444444443333 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHccC
Q 008135 310 ERMRRELQAVERDIADAENARNEWESKTWDLDSKLGR----KFKELEALSMECNQAMKRLKL 367 (576)
Q Consensus 310 ~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~----~~e~le~l~~~yn~~~~kl~l 367 (576)
.+++.++..+...++++...+.++...+.+.+..... ...++..+-..|+.+-...|.
T Consensus 233 ~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw 294 (325)
T PF08317_consen 233 AELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTGW 294 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCc
Confidence 5566666666666666666666666655555543221 224566666666666555554
No 52
>PRK01156 chromosome segregation protein; Provisional
Probab=97.41 E-value=0.52 Score=56.22 Aligned_cols=35 Identities=6% Similarity=0.228 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 266 KMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (576)
Q Consensus 266 ~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~ 300 (576)
++..++.++..++.....++..+...+.+|.....
T Consensus 413 e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~ 447 (895)
T PRK01156 413 EINVKLQDISSKVSSLNQRIRALRENLDELSRNME 447 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555554444
No 53
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=97.34 E-value=0.045 Score=54.82 Aligned_cols=37 Identities=24% Similarity=0.501 Sum_probs=30.9
Q ss_pred HhcCCCCcccccccccCCCCCChHHHHHHHHHHHHHHHHhh
Q 008135 120 KSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNY 160 (576)
Q Consensus 120 k~l~yP~~i~ks~l~~~g~~h~wp~~l~~L~WLv~l~~~~~ 160 (576)
+.||||=.||-..+.+| +||-+--+|.|||....-..
T Consensus 1 R~LGypr~iSmenFrtP----NF~LVAeiL~WLv~rydP~~ 37 (267)
T PF10234_consen 1 RALGYPRLISMENFRTP----NFELVAEILRWLVKRYDPDA 37 (267)
T ss_pred CCCCCCCCCcHHHcCCC----ChHHHHHHHHHHHHHcCCCC
Confidence 46999999999999775 89999999999997664443
No 54
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.30 E-value=0.56 Score=54.13 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQE 460 (576)
Q Consensus 411 ~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~ee 460 (576)
++..+...+..++..++..+.+...+++.+.+...++..||......++.
T Consensus 478 Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~ 527 (1195)
T KOG4643|consen 478 QLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYEL 527 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666677777777777777777777777777777666555443
No 55
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.28 E-value=0.6 Score=53.96 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 008135 257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINA 306 (576)
Q Consensus 257 i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~ 306 (576)
.+.+...+..+...+.+++..++.....+.....++..|...|...|.++
T Consensus 123 ~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~ 172 (775)
T PF10174_consen 123 RERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSA 172 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 33333444444444555555555555555566677777777777777764
No 56
>PRK09039 hypothetical protein; Validated
Probab=97.24 E-value=0.29 Score=51.48 Aligned_cols=23 Identities=13% Similarity=0.459 Sum_probs=17.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh
Q 008135 138 SPHNWPAYLALIHWLVQIASYNY 160 (576)
Q Consensus 138 ~~h~wp~~l~~L~WLv~l~~~~~ 160 (576)
+.+.||.++.+|+=|.-++.|.-
T Consensus 12 ~~~~wpg~vd~~~~ll~~~~f~l 34 (343)
T PRK09039 12 GVDYWPGFVDALSTLLLVIMFLL 34 (343)
T ss_pred CCCCCchHHHHHHHHHHHHHHHH
Confidence 34679999999988887776653
No 57
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=97.22 E-value=0.21 Score=52.57 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=54.9
Q ss_pred CCCCH--HHHHHHHHHHHHcCCCCC--CcChHh------HHHHHHHhcCCCCcccccccccCCCCCChHHHHHHHHHHHH
Q 008135 85 QVPSV--KDITDVIKFLISQLDYPS--TTKFEE------DLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQ 154 (576)
Q Consensus 85 ~~pt~--k~f~~i~~~L~~~ld~~~--~~k~ee------ev~~~lk~l~yP~~i~ks~l~~~g~~h~wp~~l~~L~WLv~ 154 (576)
.+|.. -.|..+..||....+..| ...+++ .|+..||.+|.|..++-+.|.+ |.. +++..+|.-|++
T Consensus 36 ~Np~eQF~~F~~L~~WL~~~~g~~f~~p~e~DDPn~~~~~Il~~lr~~g~~~df~p~kLk~-G~G---e~vc~VLd~Lad 111 (359)
T PF10498_consen 36 TNPGEQFYYFTSLCAWLISKAGRKFEQPQEYDDPNATISNILDELRKLGVPVDFPPSKLKQ-GSG---EHVCYVLDQLAD 111 (359)
T ss_pred CCchHHHHHHHHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHHHHccCCCCCCChHHhhC-CCC---HHHHHHHHHHHH
Confidence 36663 499999999999888655 455555 6788889999999999999977 432 489999999998
Q ss_pred HHHH
Q 008135 155 IASY 158 (576)
Q Consensus 155 l~~~ 158 (576)
.+-.
T Consensus 112 ~AL~ 115 (359)
T PF10498_consen 112 EALK 115 (359)
T ss_pred HHHH
Confidence 7644
No 58
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.22 E-value=0.59 Score=52.74 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhc---cccccccc
Q 008135 544 ISETALTVSEAYKN---SLPAQFSI 565 (576)
Q Consensus 544 ~~~~~~~i~~~f~~---~~~~~~~~ 565 (576)
|..++..|+.+|.. .| +.|-|
T Consensus 512 fr~~~~~V~~~f~~Ae~lF-~~~~Y 535 (569)
T PRK04778 512 YRSDNEEVAEALNEAERLF-REYDY 535 (569)
T ss_pred cCCCCHHHHHHHHHHHHHH-HhCCh
Confidence 88888999988875 45 55555
No 59
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.21 E-value=0.41 Score=50.74 Aligned_cols=155 Identities=10% Similarity=0.100 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008135 394 LKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKME 473 (576)
Q Consensus 394 ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~ 473 (576)
++..+..+..++.+.+.. ....-++..-.+...+.+++..++.|+..+..++.++-..-............+....+
T Consensus 456 ~~~~I~~~i~eln~~i~~---~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~ 532 (622)
T COG5185 456 INESIKKSILELNDEIQE---RIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQR 532 (622)
T ss_pred chHhHHHHHHHHhHHHHH---HHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 444444555555443332 22333444445677778888888888888888888888877777666656666777777
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHH
Q 008135 474 EDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVS---KYKERMESKISKMNKGISETALT 550 (576)
Q Consensus 474 eele~~~~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~---k~K~~i~~~i~~~~~~~~~~~~~ 550 (576)
.+++.++..++.+.-...+-+-.++++++.+.+.+++-+..|......+-..|. ..-.++.-.|++.-+|+-..+..
T Consensus 533 ~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~~v~~~~~~fk~~IQssledl~~~l~k 612 (622)
T COG5185 533 IEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIHVIDITSKFKINIQSSLEDLENELGK 612 (622)
T ss_pred HHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHH
Confidence 777777766665555566667777888888777777777766666555443332 22334444444444444444443
Q ss_pred H
Q 008135 551 V 551 (576)
Q Consensus 551 i 551 (576)
+
T Consensus 613 ~ 613 (622)
T COG5185 613 V 613 (622)
T ss_pred H
Confidence 3
No 60
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.15 E-value=1.2 Score=54.92 Aligned_cols=14 Identities=7% Similarity=-0.031 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHc
Q 008135 175 MYMYASDSYLNYIE 188 (576)
Q Consensus 175 ~~~y~~~~Y~~fl~ 188 (576)
-++-+..-|..|-.
T Consensus 328 ~L~~i~~~~~~ye~ 341 (1201)
T PF12128_consen 328 ELDEIEQQKKDYED 341 (1201)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566778888844
No 61
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.11 E-value=0.25 Score=48.72 Aligned_cols=65 Identities=6% Similarity=0.068 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008135 492 EVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYK 556 (576)
Q Consensus 492 ~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~ 556 (576)
.++..++.++......+.+.+..+..++..+-+....+..+...-.+.++.+++.-|..|-.++|
T Consensus 124 ~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~~k 188 (239)
T COG1579 124 KEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKNKK 188 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 34444445555555555566666666666666666667777777777788888888888877754
No 62
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.07 E-value=0.79 Score=51.52 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008135 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQT 303 (576)
Q Consensus 238 ~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~ 303 (576)
.++.++..+...+..++.++..+.... ...+..++++++....+...++.++..|+..+.+-+
T Consensus 185 ~l~~~i~~l~~~i~~~~~~i~~~~~~~---~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 185 TLDMKIDHIQQQIKTYNKNIEEQRKKN---GENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444555555555555544322 234555556666555566666666666655554443
No 63
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.04 E-value=0.77 Score=50.89 Aligned_cols=107 Identities=14% Similarity=0.104 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHH
Q 008135 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQT----INARDVE 310 (576)
Q Consensus 235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~----~s~~di~ 310 (576)
.+....+.+..|.+.=+|+-.-+-....-|.++..++.+-+.=++.+...+..|+.|...|+..++... .-.+-|.
T Consensus 447 eLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~ 526 (961)
T KOG4673|consen 447 ELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIE 526 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444555666666666666655554444555555444444332233344456666666666666555431 2234455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 008135 311 RMRRELQAVERDIADAENARNEWESKTWDLD 341 (576)
Q Consensus 311 r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e 341 (576)
+|+.+....+..+.......++++.+..-.+
T Consensus 527 k~~ae~~rq~~~~~~sr~~~~~le~~~~a~q 557 (961)
T KOG4673|consen 527 KHQAELTRQKDYYSNSRALAAALEAQALAEQ 557 (961)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 5665555555555554445555554443333
No 64
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.98 E-value=0.036 Score=57.88 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHH
Q 008135 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK-LQTINARDVERMRRELQAVE 320 (576)
Q Consensus 246 L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~-~Q~~s~~di~r~~~Er~~L~ 320 (576)
+...+.....-+......+.+++.++..+..+++....++..+..++.++++.+. .++++..+|.++..+...|+
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444445555555555555556666655554 35566666666555555443
No 65
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.98 E-value=0.96 Score=50.97 Aligned_cols=30 Identities=13% Similarity=0.051 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhHH--HHHHHHHHHHHHhccc
Q 008135 530 KERMESKISKMNKG--ISETALTVSEAYKNSL 559 (576)
Q Consensus 530 K~~i~~~i~~~~~~--~~~~~~~i~~~f~~~~ 559 (576)
|..++..++.++.. -+..++.=.++|+-++
T Consensus 416 kneL~~a~ekld~mgthl~mad~Q~s~fk~Lk 447 (1265)
T KOG0976|consen 416 KNELQEALEKLDLMGTHLSMADYQLSNFKVLK 447 (1265)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHH
Confidence 33444444443322 2233344445555433
No 66
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.93 E-value=1.1 Score=50.61 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhhCCCCCCC--CCCCCCCHHHHHHHHHHHHHcCCC
Q 008135 60 HQSSAIRAINAHLSSHSFHIAF--PLKQVPSVKDITDVIKFLISQLDY 105 (576)
Q Consensus 60 ~q~~~~~~i~~fL~~~~~~~~~--k~l~~pt~k~f~~i~~~L~~~ld~ 105 (576)
-+-...-.|-.++.+-||+..+ -++.=|+.++.-.||.||...|-.
T Consensus 63 aRfr~~~~lA~~~k~lGy~~digyq~fLYp~e~~~R~ll~fLiekLP~ 110 (594)
T PF05667_consen 63 ARFRVGTSLAQACKELGYRGDIGYQTFLYPNEKDLRRLLMFLIEKLPR 110 (594)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcchhhccCChHHHHHHHHHHHHHCCc
Confidence 3344566777888888997443 445568889999999999999863
No 67
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.90 E-value=1.2 Score=50.85 Aligned_cols=119 Identities=16% Similarity=0.197 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---hhhhHH
Q 008135 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINE----METQLNLLSKETQEITKRCAEEAKKMEEDIQTEA---HNLDMV 486 (576)
Q Consensus 414 ~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~----l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~---~~~~~~ 486 (576)
.+...+.+++-.++..+..|+.+|++|..=+.. .+.-+..++..++.+...+..-+.+|+.++..++ .....+
T Consensus 583 ~d~e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsSl 662 (717)
T PF09730_consen 583 KDKEELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSSL 662 (717)
T ss_pred ccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888889999999999999988765553 4455677888888888888888888888888875 222222
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 487 E-------REAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKM 540 (576)
Q Consensus 487 ~-------~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~ 540 (576)
. .|-..++++.+.++..+. ++|++|..=|.- ...-|--+-.+++++
T Consensus 663 RamFa~RCdEYvtQldemqrqL~aAE----dEKKTLNsLLRm----AIQQKLaLTQRLEdl 715 (717)
T PF09730_consen 663 RAMFAARCDEYVTQLDEMQRQLAAAE----DEKKTLNSLLRM----AIQQKLALTQRLEDL 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHH----HHHHHHHHHHHHHhc
Confidence 2 234455555555555554 788777654443 334455555555544
No 68
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.90 E-value=1.2 Score=51.08 Aligned_cols=92 Identities=17% Similarity=0.230 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008135 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQ 317 (576)
Q Consensus 238 ~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~ 317 (576)
.|+.+.+.|++|+......=.++..++ ..+...-.....++.+++.+++.|+.++....- ....=+.-+.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqi-------s~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~---aRq~DKq~l~ 491 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQI-------SSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ---ARQQDKQSLQ 491 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHH-------hhccccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 333344444444444444444444333 333332223445556666666666655433210 0111112234
Q ss_pred HHHHHHHHHHHHHHHHHHhhhH
Q 008135 318 AVERDIADAENARNEWESKTWD 339 (576)
Q Consensus 318 ~L~~~l~~~e~~~~~l~~~~~~ 339 (576)
.|++.|.+...++..++.+..+
T Consensus 492 ~LEkrL~eE~~~R~~lEkQL~e 513 (697)
T PF09726_consen 492 QLEKRLAEERRQRASLEKQLQE 513 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444433
No 69
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.89 E-value=1.4 Score=51.47 Aligned_cols=124 Identities=10% Similarity=0.213 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 008135 402 ADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAH 481 (576)
Q Consensus 402 ~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~ 481 (576)
..+......++..++.+|..+++-... .+...++..++..+..++.+++.++..-+.. ...+... ++|+. +
T Consensus 776 ~~~~a~k~~ef~~q~~~l~~~l~fe~~--~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~----~k~i~e~-~~~e~-k- 846 (1141)
T KOG0018|consen 776 QQEFAKKRLEFENQKAKLENQLDFEKQ--KDTQRRVERWERSVEDLEKEIEGLKKDEEAA----EKIIAEI-EELEK-K- 846 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhheec--ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHH----HHHHhhH-HHHHH-H-
Confidence 333444455566666666666665544 5556666666666666666666666533222 2222222 34444 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 482 NLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISK 539 (576)
Q Consensus 482 ~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~ 539 (576)
+ +..-.+.+.++.+|+..+..+. .+..+|.+++..+...|+++....+.-+..
T Consensus 847 ~-k~~~~~~~~e~~e~~k~~~~~~----~~~tkl~~~i~~~es~ie~~~~er~~lL~~ 899 (1141)
T KOG0018|consen 847 N-KSKFEKKEDEINEVKKILRRLV----KELTKLDKEITSIESKIERKESERHNLLSK 899 (1141)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 2 2222345577778887777766 778888888888888888887777776654
No 70
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.87 E-value=1.3 Score=50.81 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135 420 QQQSSEMAAKIEGKRKRIDALQFHIN 445 (576)
Q Consensus 420 q~~l~~l~~~ieek~~~l~~Le~kl~ 445 (576)
+..+.++...+.+.+.++..+..++.
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555554
No 71
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.74 Score=52.06 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 008135 144 AYLALIHWLVQIASY 158 (576)
Q Consensus 144 ~~l~~L~WLv~l~~~ 158 (576)
.+-|+...|.-++.|
T Consensus 544 viqgl~A~lLgl~~~ 558 (970)
T KOG0946|consen 544 VIQGLCAFLLGLCYY 558 (970)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344666666666655
No 72
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.83 E-value=1.6 Score=51.20 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHcCCCCC
Q 008135 174 SMYMYASDSYLNYIEGKDGD 193 (576)
Q Consensus 174 ~~~~y~~~~Y~~fl~g~d~~ 193 (576)
...+-+++.-+.|+...+..
T Consensus 1471 ~el~~Li~~v~~Flt~~~ad 1490 (1758)
T KOG0994|consen 1471 RELRNLIQQVRDFLTQPDAD 1490 (1758)
T ss_pred HHHHHHHHHHHHHhcCCCCC
Confidence 35566777778887776633
No 73
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.80 E-value=0.74 Score=46.91 Aligned_cols=88 Identities=18% Similarity=0.280 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 008135 235 EREKLEKEKCVLEEDLNKFNAI-IGELNMRKEKMEKLVEEKEREIGK-KVEEHKRICEENEEFKKRVKLQTINARDVERM 312 (576)
Q Consensus 235 ~l~~l~~~~~~L~~D~~K~~~~-i~~l~~~~~~~e~~l~~l~~Ele~-~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~ 312 (576)
+++.+.+++..|..++++-..+ .+.|..++.++...-.+++..|+. .......|...+..|....... ....+++
T Consensus 85 kl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~---q~~le~L 161 (310)
T PF09755_consen 85 KLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAK---QEELERL 161 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh---HHHHHHH
Confidence 4556666666666565555443 455666666666666666666654 2234455555555554443221 2345566
Q ss_pred HHHHHHHHHHHHH
Q 008135 313 RRELQAVERDIAD 325 (576)
Q Consensus 313 ~~Er~~L~~~l~~ 325 (576)
.+|...|+..|+.
T Consensus 162 r~EKVdlEn~LE~ 174 (310)
T PF09755_consen 162 RREKVDLENTLEQ 174 (310)
T ss_pred HHHHHhHHHHHHH
Confidence 6666556555543
No 74
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.77 E-value=1.5 Score=50.10 Aligned_cols=74 Identities=15% Similarity=0.281 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135 405 VKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQT 478 (576)
Q Consensus 405 i~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~ 478 (576)
+.+....+-+.+..++.+.+....+.++....++.++.++..+..+++.+...+.+.....++....+...+..
T Consensus 464 ~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~ 537 (980)
T KOG0980|consen 464 VEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQ 537 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 33344444455555666666666666666666666666666666666666666555555555555444444333
No 75
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.76 E-value=0.77 Score=46.52 Aligned_cols=40 Identities=10% Similarity=0.315 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 008135 285 HKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIA 324 (576)
Q Consensus 285 ~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~ 324 (576)
+..++.++.+|......-.++++.=.++-+.+..|.+.+.
T Consensus 109 ~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le 148 (294)
T COG1340 109 IKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELE 148 (294)
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555444444444444444
No 76
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.72 E-value=1.5 Score=49.52 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 412 KLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLS 455 (576)
Q Consensus 412 ~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk 455 (576)
+...+..++..++.+...++.+..++..|+...+.+..++....
T Consensus 200 L~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~ 243 (617)
T PF15070_consen 200 LQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYV 243 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777777777777777777777777666555555443
No 77
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.66 E-value=0.00044 Score=80.99 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008135 407 RSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLL 454 (576)
Q Consensus 407 ~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~l 454 (576)
+....+..++..|...++++...++..+..+..|+..+..+..+++..
T Consensus 405 ~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~ 452 (859)
T PF01576_consen 405 REARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDA 452 (859)
T ss_dssp ------------------------------------------------
T ss_pred HHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 333444455555666666666666666666666666666555555443
No 78
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.61 E-value=0.3 Score=50.51 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008135 237 EKLEKEKCVLEEDLNKFNAIIGE 259 (576)
Q Consensus 237 ~~l~~~~~~L~~D~~K~~~~i~~ 259 (576)
..+..+...|+.++..+++....
T Consensus 175 ~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 175 PKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444444444444444443333
No 79
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.61 E-value=1.8 Score=48.77 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 008135 321 RDIADAENARNEWESKTWDLDS-KLGRKFKELEALSMECNQAMKR 364 (576)
Q Consensus 321 ~~l~~~e~~~~~l~~~~~~~e~-~l~~~~e~le~l~~~yn~~~~k 364 (576)
..++++......+....+.+.- .+...++.+...+..+...+..
T Consensus 226 ~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~ 270 (560)
T PF06160_consen 226 DQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKN 270 (560)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555555555555444432 4455555555555554444433
No 80
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.58 E-value=0.89 Score=44.95 Aligned_cols=92 Identities=20% Similarity=0.236 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 008135 247 EEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADA 326 (576)
Q Consensus 247 ~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~ 326 (576)
..++.|.++-++.+......++..+.+++.+.-..+.++..+...++..+..+ .-..+..+...++.|.+.+++.+..+
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~l 108 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSL 108 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444445555444444555555555555555555 33345556666666666666666666
Q ss_pred HHHHHHHHHhhhH
Q 008135 327 ENARNEWESKTWD 339 (576)
Q Consensus 327 e~~~~~l~~~~~~ 339 (576)
+..+..+......
T Consensus 109 e~el~~l~~~~~~ 121 (239)
T COG1579 109 EDELAELMEEIEK 121 (239)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444333
No 81
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.58 E-value=1.9 Score=48.62 Aligned_cols=78 Identities=19% Similarity=0.130 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008135 283 EEHKRICEENEEFKKRVKLQTINARDVERMR----RELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMEC 358 (576)
Q Consensus 283 ~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~----~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~y 358 (576)
.+++++...+......|.+- ..+++...+ .+++.|-..++.--.+.....+........+.+..+....+..++
T Consensus 252 ~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~ 329 (560)
T PF06160_consen 252 EEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEEL 329 (560)
T ss_pred HHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666443 333443333 333444333333333444444444444444444444444444444
Q ss_pred HHHH
Q 008135 359 NQAM 362 (576)
Q Consensus 359 n~~~ 362 (576)
..+.
T Consensus 330 ~~v~ 333 (560)
T PF06160_consen 330 ERVS 333 (560)
T ss_pred HHHH
Confidence 4433
No 82
>PRK09039 hypothetical protein; Validated
Probab=96.56 E-value=0.49 Score=49.79 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008135 308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354 (576)
Q Consensus 308 di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l 354 (576)
+|.+++.++..|+..+..++..++..+.+..+....+...-..|+..
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555544444444444443333333
No 83
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.54 E-value=1.8 Score=48.08 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008135 416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQL---NLLS-KETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAV 491 (576)
Q Consensus 416 ~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql---~~lk-~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~ 491 (576)
+....+........+++++.++.++++..+.+..-+ +.++ .++.+....+...+..|+..+...++..-..+.-..
T Consensus 532 ~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R 611 (961)
T KOG4673|consen 532 LTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFR 611 (961)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555544443311 1111 123333334455555555555554433322233333
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 008135 492 EVLKASESKFQEAIRQCEEE-------IQIRALDLFALVDSV 526 (576)
Q Consensus 492 ~el~~~~~~~ee~~~e~eee-------k~~l~~el~~l~~~i 526 (576)
.++..+++|||.+...+++- .+-|-+.+..+-.++
T Consensus 612 ~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl 653 (961)
T KOG4673|consen 612 GEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETL 653 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence 44555566666655544443 344444444444443
No 84
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.51 E-value=1.3 Score=45.93 Aligned_cols=126 Identities=23% Similarity=0.335 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 008135 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKK----VEEHKRICEENEEFKKRVKLQTINARDVE 310 (576)
Q Consensus 235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~----~~e~~~l~~e~~eL~~~l~~Q~~s~~di~ 310 (576)
.++.++.....|..+++....++..+..+...+..++..+++-.... ..++..++.++.++...+... ..++.
T Consensus 152 ~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~---~~~l~ 228 (312)
T smart00787 152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIK---VKKLE 228 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 45566666666777777777777777777777766666654433221 134444444444443333322 23455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 008135 311 RMRRELQAVERDIADAENARNEWESKTWDLDSKLGRK----FKELEALSMECNQAMK 363 (576)
Q Consensus 311 r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~----~e~le~l~~~yn~~~~ 363 (576)
..+.++..+...|++....+.++...+.+.+..+... ..++..+...|+.+-.
T Consensus 229 e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 229 ELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 5555555566666655556655555555555432111 1355555555555443
No 85
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.50 E-value=1.5 Score=46.71 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 418 SLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSK 456 (576)
Q Consensus 418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~ 456 (576)
.-...+..+...++..+.++..+.....+-...++.+..
T Consensus 168 ~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~ 206 (420)
T COG4942 168 ATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLE 206 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333333333333333
No 86
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=2.1 Score=48.22 Aligned_cols=13 Identities=38% Similarity=0.478 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCCC
Q 008135 35 SFASSRPSSIGMG 47 (576)
Q Consensus 35 s~~~sr~s~~g~~ 47 (576)
+.-|+|.+|+..|
T Consensus 143 tvpS~~~~sl~nG 155 (1118)
T KOG1029|consen 143 TVPSSRHNSLPNG 155 (1118)
T ss_pred cCCCCCCCCCCCC
Confidence 3345666666444
No 87
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.43 E-value=0.98 Score=43.76 Aligned_cols=126 Identities=21% Similarity=0.253 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 008135 235 EREKLEKEKCVLEEDLNKFNAI---IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVER 311 (576)
Q Consensus 235 ~l~~l~~~~~~L~~D~~K~~~~---i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r 311 (576)
++..++.+...|+.++..|..- ...+..+...+++.+..++-+-+........++.|+.+|..+... ++.||..
T Consensus 63 pL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~---~i~evqQ 139 (201)
T PF13851_consen 63 PLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES---AIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 7788888888888887777654 444556777788888888888888888889999999999877654 2334433
Q ss_pred HH--------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 312 MR--------RELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMK 363 (576)
Q Consensus 312 ~~--------~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~ 363 (576)
.- +....|...++..+.++..+-....=--.++......++.++...|....
T Consensus 140 k~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~~~~~v~~~l~~~l~~KN~~I~ 199 (201)
T PF13851_consen 140 KTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPAALSQVSKKLEDVLDSKNQTIK 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 22244444444444444444333222223345556677777777777654
No 88
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.37 E-value=2.2 Score=47.18 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKE 457 (576)
Q Consensus 414 ~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e 457 (576)
+....|+.++..+......+..++..+..+.+.+.++....++-
T Consensus 383 ~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~ 426 (629)
T KOG0963|consen 383 EKNRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKEL 426 (629)
T ss_pred HHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHH
Confidence 33445555665665555555556666666666666555555543
No 89
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.29 E-value=3.3 Score=48.22 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=31.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 206 EKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNM 262 (576)
Q Consensus 206 ~~~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~ 262 (576)
+.+++...+.+..|..++..+++ .++.|+.++..+..+-..|..|++.+..
T Consensus 190 rqElEEK~enll~lr~eLddlea------e~~klrqe~~e~l~ea~ra~~yrdelda 240 (1195)
T KOG4643|consen 190 RQELEEKFENLLRLRNELDDLEA------EISKLRQEIEEFLDEAHRADRYRDELDA 240 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 34444444455555555555554 5666777777777777777778777664
No 90
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.28 E-value=2.8 Score=47.32 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008135 413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEM 447 (576)
Q Consensus 413 ~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l 447 (576)
.+++..++.++..+...+..++.....|...+..+
T Consensus 446 ~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~ 480 (594)
T PF05667_consen 446 LQEIKELREEIKEIEEEIRQKEELYKQLVKELEKL 480 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444555666666666666666656665555544
No 91
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.27 E-value=3.1 Score=47.87 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEK 274 (576)
Q Consensus 236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l 274 (576)
+..++.++..|+..+..+..-...=...+..+|++|.+.
T Consensus 462 L~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 462 LSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443333333333233334444444433
No 92
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=96.19 E-value=2.3 Score=45.52 Aligned_cols=35 Identities=23% Similarity=0.430 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 008135 317 QAVERDIADAENARNEWESKTWDLDSKLGRKFKEL 351 (576)
Q Consensus 317 ~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~l 351 (576)
..|++.++++..++..++.....++..+..+.+.+
T Consensus 133 ~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~ 167 (384)
T PF03148_consen 133 RLLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEAL 167 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666543
No 93
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.14 E-value=0.86 Score=41.64 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 008135 311 RMRRELQAVERDIADAENARNEWESKTWDLD 341 (576)
Q Consensus 311 r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e 341 (576)
.+++.++.|...++..+..+.....++.+.+
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d 107 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREAD 107 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444444444444433
No 94
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.12 E-value=5.8 Score=49.56 Aligned_cols=8 Identities=0% Similarity=0.522 Sum_probs=4.5
Q ss_pred HHHHHHHh
Q 008135 114 DLFVVLKS 121 (576)
Q Consensus 114 ev~~~lk~ 121 (576)
.++.+|+.
T Consensus 196 kF~kLf~t 203 (1486)
T PRK04863 196 KFYRLIEA 203 (1486)
T ss_pred HHHHHHHH
Confidence 45566655
No 95
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.11 E-value=1.3 Score=41.95 Aligned_cols=91 Identities=19% Similarity=0.263 Sum_probs=50.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 204 KLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVE 283 (576)
Q Consensus 204 kl~~~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~ 283 (576)
++...++...+....|..++..|.. ....+..+-..-+++...++++......++.....+-.....++.|-.....
T Consensus 26 kL~~~ve~~ee~na~L~~e~~~L~~---q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~ 102 (193)
T PF14662_consen 26 KLQRSVETAEEGNAQLAEEITDLRK---QLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVA 102 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544443 1112334444455566666666666666666666666666666666555556
Q ss_pred HHHHHHHHHHHHHH
Q 008135 284 EHKRICEENEEFKK 297 (576)
Q Consensus 284 e~~~l~~e~~eL~~ 297 (576)
++..++.++..|..
T Consensus 103 ~i~~Lqeen~kl~~ 116 (193)
T PF14662_consen 103 EIETLQEENGKLLA 116 (193)
T ss_pred HHHHHHHHHhHHHH
Confidence 66666666555543
No 96
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.08 E-value=3.1 Score=46.08 Aligned_cols=58 Identities=17% Similarity=0.311 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 398 LESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSK 456 (576)
Q Consensus 398 L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~ 456 (576)
+..|..+|.+.-..+.++......++..+...+..+...+..|..++..- +-|+.++.
T Consensus 294 i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ 351 (629)
T KOG0963|consen 294 IAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKK 351 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHH
Confidence 33556666655555555555555555555555555555555555444433 33444333
No 97
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.07 E-value=1.1 Score=40.92 Aligned_cols=52 Identities=27% Similarity=0.385 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 211 NVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKME 268 (576)
Q Consensus 211 ~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e 268 (576)
.+.+.+..|+....+++ ..+..|..++..|+.++.+...-+...........
T Consensus 18 ~~e~~~K~le~~~~~~E------~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~ 69 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKE------QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE 69 (143)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444444444444444 25556666666666666666666655555444443
No 98
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.90 E-value=5.4 Score=47.33 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGK 280 (576)
Q Consensus 239 l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~ 280 (576)
|..++..+.-.-.-++-++....+++......+..+++++..
T Consensus 311 L~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~ 352 (1293)
T KOG0996|consen 311 LKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKD 352 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333333333333333444444455555555555555555443
No 99
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.77 E-value=6.7 Score=47.40 Aligned_cols=45 Identities=22% Similarity=0.212 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 318 AVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAM 362 (576)
Q Consensus 318 ~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~ 362 (576)
+++.++.++...+..+..++.+....+......++..+.+|+.+.
T Consensus 882 qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k 926 (1294)
T KOG0962|consen 882 QLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELK 926 (1294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444443
No 100
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.73 E-value=5.8 Score=46.37 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 008135 144 AYLALIHWLVQIASYNYHL 162 (576)
Q Consensus 144 ~~l~~L~WLv~l~~~~~~~ 162 (576)
.-+|+-++|.+++...+.+
T Consensus 528 ~~lGF~gyls~f~~~p~~v 546 (1072)
T KOG0979|consen 528 KRLGFEGYLSNFIEAPEPV 546 (1072)
T ss_pred HhcChHHHhhhhhcCcHHH
Confidence 4457778888877655443
No 101
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.70 E-value=6.3 Score=46.60 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135 526 VSKYKERMESKISKMNKGISETALTVSEA 554 (576)
Q Consensus 526 i~k~K~~i~~~i~~~~~~~~~~~~~i~~~ 554 (576)
-+.+.+..+..|..+++.+-+.+..|++.
T Consensus 1722 ~~~~L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1722 NEQALEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 35556666667777777777777777653
No 102
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.66 E-value=8.8 Score=47.96 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008135 261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDL 340 (576)
Q Consensus 261 ~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~ 340 (576)
+.++.+++..|.++..++.....++..+.+....|....+.-+- ..++..-..+...-...++.....+...+.+....
T Consensus 741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps-~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a 819 (1353)
T TIGR02680 741 LRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPS-DRSLRAAHRRAAEAERQAESAERELARAARKAAAA 819 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777777777777777777777777666653 34555555555555555555555555554444333
Q ss_pred H
Q 008135 341 D 341 (576)
Q Consensus 341 e 341 (576)
.
T Consensus 820 ~ 820 (1353)
T TIGR02680 820 A 820 (1353)
T ss_pred H
Confidence 3
No 103
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.49 E-value=7 Score=45.72 Aligned_cols=51 Identities=12% Similarity=0.203 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccc
Q 008135 511 EIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPA 561 (576)
Q Consensus 511 ek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~ 561 (576)
+.+.+...+......++.++.++-...+.+-..+-+-+.-||+.|...|..
T Consensus 871 el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~~Fs~~F~~ 921 (1072)
T KOG0979|consen 871 ELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINERFSQLFSS 921 (1072)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555555555556655555555555555666677788888887764
No 104
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.43 E-value=6.7 Score=45.15 Aligned_cols=57 Identities=11% Similarity=0.233 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 403 DDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQ 459 (576)
Q Consensus 403 ~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~e 459 (576)
+++..+...-.....+..+.+.+++..+++..+....++.+.......++.+++|+.
T Consensus 448 ~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~ 504 (980)
T KOG0980|consen 448 DDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELA 504 (980)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333333333334444677777777777777777777777777777777777776544
No 105
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.43 E-value=2.5 Score=40.13 Aligned_cols=96 Identities=10% Similarity=0.178 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008135 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQ 317 (576)
Q Consensus 238 ~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~ 317 (576)
.|+--+..|.+...|++.-++.++.....+...+..+...+.... -...-..-+..|..
T Consensus 12 dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q---------------------qal~~aK~l~eEle 70 (193)
T PF14662_consen 12 DLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ---------------------QALQKAKALEEELE 70 (193)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Confidence 344444555555555555555555544444444444433332111 11122223344455
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008135 318 AVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354 (576)
Q Consensus 318 ~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l 354 (576)
.|+..+..++.....|..+...++..-.+.+..++.+
T Consensus 71 dLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~L 107 (193)
T PF14662_consen 71 DLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETL 107 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555444444444443
No 106
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.43 E-value=8.3 Score=46.18 Aligned_cols=13 Identities=15% Similarity=-0.023 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q 008135 544 ISETALTVSEAYK 556 (576)
Q Consensus 544 ~~~~~~~i~~~f~ 556 (576)
.+..+..|++.|.
T Consensus 741 ~~~~~~~l~~~~~ 753 (908)
T COG0419 741 ALELLEELREKLG 753 (908)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444443
No 107
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=95.42 E-value=6.3 Score=44.79 Aligned_cols=127 Identities=17% Similarity=0.137 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008135 397 ALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDI 476 (576)
Q Consensus 397 ~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eel 476 (576)
.|+.|+-.+..++.+.......|+...+++-..++..+.++..+-.-+.+-+.++-..++..+-+..++..|++..-..+
T Consensus 431 sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~ 510 (861)
T PF15254_consen 431 SLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNV 510 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666778888888888888888888888777777777777777776666555544443333333
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 477 QTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVD 524 (576)
Q Consensus 477 e~~~~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~ 524 (576)
+..+--+.+.++|-.-.-..+++|=.++. .+.|-.+.|+.-+..++.
T Consensus 511 k~~q~kLe~sekEN~iL~itlrQrDaEi~-RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 511 KSLQFKLEASEKENQILGITLRQRDAEIE-RLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHhhhHHHHHhhhhHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 33222222222221111122333322222 334455666666666664
No 108
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.37 E-value=5.3 Score=43.54 Aligned_cols=92 Identities=15% Similarity=0.180 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008135 242 EKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVER 321 (576)
Q Consensus 242 ~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~ 321 (576)
++..+..-..+|...-..++.....+...|.+.+-.-...-.+...|+.|+-.|+++|..-.-|.-+.+-++.++..|..
T Consensus 129 E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleE 208 (772)
T KOG0999|consen 129 ENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEE 208 (772)
T ss_pred HHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 33333333333333333333333334444444433323334556677777778888888777777777777777777776
Q ss_pred HHHHHHHHHHHH
Q 008135 322 DIADAENARNEW 333 (576)
Q Consensus 322 ~l~~~e~~~~~l 333 (576)
.++-+..+.++.
T Consensus 209 e~elln~q~ee~ 220 (772)
T KOG0999|consen 209 ETELLNSQLEEA 220 (772)
T ss_pred HHHHHHHHHHHH
Confidence 665554444433
No 109
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.21 E-value=7.3 Score=44.24 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=16.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHh
Q 008135 204 KLEKEKENVSEYVEELKKKVSEMEG 228 (576)
Q Consensus 204 kl~~~~~~~~~~~~~L~~~~~~le~ 228 (576)
.|..........++.|+..+.+|..
T Consensus 40 ~L~eEk~~~~~~V~eLE~sL~eLk~ 64 (617)
T PF15070_consen 40 TLKEEKEHDISRVQELERSLSELKN 64 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566667777777777765
No 110
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.15 E-value=0.93 Score=40.03 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 008135 257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIA 324 (576)
Q Consensus 257 i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~ 324 (576)
++.+.+.+..++..+..++.++.....+...+.+|+-.|-...+...-....+..+..+...|+...+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555555555444443344444455555544444443
No 111
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.13 E-value=7.2 Score=43.72 Aligned_cols=116 Identities=19% Similarity=0.309 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 008135 416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLK 495 (576)
Q Consensus 416 ~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~ 495 (576)
+..|+.+...+...+.--...+..++.++..+..+++.+++..++. .+.+..+|+... +.+.+...++.
T Consensus 610 ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~-------~~~~~keie~K~----~~e~~L~~Eve 678 (786)
T PF05483_consen 610 IEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEE-------TDKYQKEIESKS----ISEEELLGEVE 678 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHhh----hhHHHHHHHHH
Confidence 3345555555555555555566666666666666666666665555 344444444432 11122224555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008135 496 ASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNK 542 (576)
Q Consensus 496 ~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~ 542 (576)
.++.-..++...-.+.=-+|+..+.+++..+++||..-..-|++-+.
T Consensus 679 K~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDa 725 (786)
T PF05483_consen 679 KAKLTADEAVKLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDA 725 (786)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55555666554444444688999999999999999888877777443
No 112
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.04 E-value=6 Score=42.33 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 008135 244 CVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDI 323 (576)
Q Consensus 244 ~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l 323 (576)
-+|...+.|++.-....+.+|..++-.- --|+..+++|+-.+..|.+-++-|..+....+.|-.+-
T Consensus 313 maLNEvL~kLk~tn~kQq~~IqdLq~sN--------------~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedK 378 (527)
T PF15066_consen 313 MALNEVLQKLKHTNRKQQNRIQDLQCSN--------------LYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDK 378 (527)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhcc--------------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhH
Confidence 3455555555554444444443332221 13445666777777777777777766666666654443
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 008135 324 ADAENARNEWESKTWDLDSKLGRKFKEL 351 (576)
Q Consensus 324 ~~~e~~~~~l~~~~~~~e~~l~~~~e~l 351 (576)
=..--.+.++.....++.-.+++..+.|
T Consensus 379 Y~viLEKnd~~k~lqnLqe~la~tqk~L 406 (527)
T PF15066_consen 379 YRVILEKNDIEKTLQNLQEALANTQKHL 406 (527)
T ss_pred hHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2222333333344444443333333333
No 113
>PRK11281 hypothetical protein; Provisional
Probab=94.95 E-value=12 Score=45.41 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=11.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 431 EGKRKRIDALQFHINEMETQLNLLSK 456 (576)
Q Consensus 431 eek~~~l~~Le~kl~~l~~ql~~lk~ 456 (576)
+....++..++.+++.+...++..+.
T Consensus 230 d~~~~~~~~~~~~~~~lq~~in~kr~ 255 (1113)
T PRK11281 230 DYLTARIQRLEHQLQLLQEAINSKRL 255 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333
No 114
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=94.94 E-value=4.7 Score=40.62 Aligned_cols=58 Identities=17% Similarity=0.406 Sum_probs=41.1
Q ss_pred CCCC--CCCCCCCCCCHHHHHHHHHHHHHcCCCCC--CcCh--HhHHHHHHHhcCCCCccccccc
Q 008135 75 HSFH--IAFPLKQVPSVKDITDVIKFLISQLDYPS--TTKF--EEDLFVVLKSLSCPFKINKSTL 133 (576)
Q Consensus 75 ~~~~--~~~k~l~~pt~k~f~~i~~~L~~~ld~~~--~~k~--eeev~~~lk~l~yP~~i~ks~l 133 (576)
-||| +|+-.+++|......+|..||..++||.. ...+ |++=+.|+|... -|..+|+.+
T Consensus 3 LGypr~iSmenFrtPNF~LVAeiL~WLv~rydP~~~i~~~i~tE~dRV~Fik~v~-~~~~tKa~I 66 (267)
T PF10234_consen 3 LGYPRLISMENFRTPNFELVAEILRWLVKRYDPDADIPGDIDTEQDRVFFIKSVA-EFMATKARI 66 (267)
T ss_pred CCCCCCCcHHHcCCCChHHHHHHHHHHHHHcCCCCCCCCcCCcHHHHHHHHHHHH-HHHHHHhhe
Confidence 4888 56667789999999999999999999865 3333 446677788743 223344444
No 115
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.90 E-value=0.0072 Score=69.91 Aligned_cols=45 Identities=27% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 417 ISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEI 461 (576)
Q Consensus 417 ~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee 461 (576)
..|+..++..+......+.++.....++..++.+++.+.+.+.+.
T Consensus 484 ~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~ 528 (713)
T PF05622_consen 484 EELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSLQEQ 528 (713)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666666666655443
No 116
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=94.90 E-value=7.2 Score=42.57 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 213 SEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGE 259 (576)
Q Consensus 213 ~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~ 259 (576)
...+..++.++.+.+.+.+..+++++.+ -....+..+..+.+|++.
T Consensus 170 Ek~Le~i~~~l~qf~~lt~~Gd~ieA~e-vl~~~ee~~~~L~~~~e~ 215 (570)
T COG4477 170 EKKLENIEEELSQFVELTSSGDYIEARE-VLEEAEEHMIALRSIMER 215 (570)
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555432 233333344444444443
No 117
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=94.89 E-value=5 Score=40.76 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135 418 SLQQQSSEMAAKIEGKRKRIDALQFHIN 445 (576)
Q Consensus 418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~ 445 (576)
.+..+++.+.....+..+.+..|-.+++
T Consensus 162 el~aei~~lk~~~~e~~eki~~la~eaq 189 (294)
T COG1340 162 ELKAEIDELKKKAREIHEKIQELANEAQ 189 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333333333
No 118
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.83 E-value=11 Score=44.52 Aligned_cols=73 Identities=22% Similarity=0.369 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 253 FNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAEN 328 (576)
Q Consensus 253 ~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~ 328 (576)
....+++++.++..++..+..+++-+.......+.+..+...++..+.+. ..++..+..+..++...|...+.
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~---~~el~~~~ee~~~~~~~l~~~e~ 518 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNK---NKELESLKEELQQAKATLKEEEE 518 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333334445556666666665554 34555666666666665544433
No 119
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.82 E-value=0.39 Score=55.79 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhHH---HHHHHHHHHHHHhccccccccc
Q 008135 528 KYKERMESKISKMNKG---ISETALTVSEAYKNSLPAQFSI 565 (576)
Q Consensus 528 k~K~~i~~~i~~~~~~---~~~~~~~i~~~f~~~~~~~~~~ 565 (576)
+-...++..|+...+. +.+.|.+=+..|++.+..-||+
T Consensus 606 ~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~llGy 646 (722)
T PF05557_consen 606 KEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLLGY 646 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3345566666665443 8899999999999999999998
No 120
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.74 E-value=7.2 Score=41.82 Aligned_cols=100 Identities=11% Similarity=0.134 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008135 240 EKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAV 319 (576)
Q Consensus 240 ~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L 319 (576)
......+......+++-+..++..+..++..+..++..+.....++...+......+.-++..-++..++.....+...+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~ 208 (423)
T TIGR01843 129 KGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEA 208 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 33344444445555555666666666666666666666666666666666666666666666666777777777777666
Q ss_pred HHHHHHHHHHHHHHHHhhhH
Q 008135 320 ERDIADAENARNEWESKTWD 339 (576)
Q Consensus 320 ~~~l~~~e~~~~~l~~~~~~ 339 (576)
+..+..++..+..++.....
T Consensus 209 ~~~l~~~~~~l~~~~~~l~~ 228 (423)
T TIGR01843 209 QGELGRLEAELEVLKRQIDE 228 (423)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 66666665555555444433
No 121
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.71 E-value=8.3 Score=42.95 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 008135 237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKM-EKLVEEKEREIGK---KVEEHKRICEENEEFKKRVKLQTINARD 308 (576)
Q Consensus 237 ~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~-e~~l~~l~~Ele~---~~~e~~~l~~e~~eL~~~l~~Q~~s~~d 308 (576)
..+..+.+.+..++.....-+..+...+..+ ..+...+..+... .....+.|+.....|...+....-+...
T Consensus 105 ~sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~ 180 (511)
T PF09787_consen 105 DSLSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAIT 180 (511)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHH
Confidence 3444556666666666666666666555555 2222222222111 1122367777777777777776665444
No 122
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.56 E-value=13 Score=44.02 Aligned_cols=76 Identities=22% Similarity=0.243 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 008135 236 REKLEKEKCVLEEDLNKFNAIIG-------ELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARD 308 (576)
Q Consensus 236 l~~l~~~~~~L~~D~~K~~~~i~-------~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~d 308 (576)
++.++.+...+...+..++.... .+..+...++.+|.....+++....++.+++..+..-...+.+|.-+..-
T Consensus 450 ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~ 529 (1041)
T KOG0243|consen 450 IEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEK 529 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333 44444445555555555555544444444444444444445555554443
Q ss_pred HHH
Q 008135 309 VER 311 (576)
Q Consensus 309 i~r 311 (576)
+.+
T Consensus 530 l~~ 532 (1041)
T KOG0243|consen 530 LVD 532 (1041)
T ss_pred HHH
Confidence 333
No 123
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.54 E-value=9.9 Score=42.48 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKM 267 (576)
Q Consensus 236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~ 267 (576)
+...+..+.....++..-+..++.+..++...
T Consensus 50 l~~~E~~k~~~l~ELe~akr~veel~~kLe~~ 81 (522)
T PF05701_consen 50 LEAAEREKAQALSELESAKRTVEELKLKLEKA 81 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555443
No 124
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.34 E-value=11 Score=42.15 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008135 262 MRKEKMEKLVEEKEREIG 279 (576)
Q Consensus 262 ~~~~~~e~~l~~l~~Ele 279 (576)
.+...+...|..++..++
T Consensus 172 ~kve~L~~Ei~~lke~l~ 189 (522)
T PF05701_consen 172 EKVEELSKEIIALKESLE 189 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 125
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.33 E-value=5.4 Score=38.63 Aligned_cols=150 Identities=13% Similarity=0.149 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHH--h
Q 008135 410 VEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRC------AEEAKKMEEDIQTEA--H 481 (576)
Q Consensus 410 ~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~------~~Ei~kl~eele~~~--~ 481 (576)
..+.+++..+...-......+.+...++..|..-+..+..+...+++.+..+.... .+.+..++.++..++ +
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~ 109 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEH 109 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555666666666666666666666666666665522 234444555555554 2
Q ss_pred hhhHHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008135 482 NLDMVE-REAVEVLKASESKFQE----AIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYK 556 (576)
Q Consensus 482 ~~~~~~-~ea~~el~~~~~~~ee----~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~ 556 (576)
+..... ..+..+.+++..+++. +.+.+....--|.+.|..+-+.+++--..+.+.+....-|.- ++..|.....
T Consensus 110 evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~-~~~~v~~~l~ 188 (201)
T PF13851_consen 110 EVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPA-ALSQVSKKLE 188 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 221111 2344445555554444 444555566778888888888888887888887777554422 3344444444
Q ss_pred cccc
Q 008135 557 NSLP 560 (576)
Q Consensus 557 ~~~~ 560 (576)
+++.
T Consensus 189 ~~l~ 192 (201)
T PF13851_consen 189 DVLD 192 (201)
T ss_pred HHHH
Confidence 4433
No 126
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.22 E-value=7.5 Score=39.81 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=9.3
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 008135 204 KLEKEKENVSEYVEELKK 221 (576)
Q Consensus 204 kl~~~~~~~~~~~~~L~~ 221 (576)
.+...++.+..+...|..
T Consensus 24 ~l~~~~~sL~qen~~Lk~ 41 (310)
T PF09755_consen 24 QLRKRIESLQQENRVLKR 41 (310)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 344455555555555544
No 127
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.19 E-value=7.6 Score=39.80 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 008135 492 EVLKASESKFQE 503 (576)
Q Consensus 492 ~el~~~~~~~ee 503 (576)
.++..++.+|.+
T Consensus 276 aEL~elqdkY~E 287 (306)
T PF04849_consen 276 AELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHHHH
Confidence 345555555555
No 128
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.09 E-value=4.5 Score=36.74 Aligned_cols=75 Identities=19% Similarity=0.138 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 008135 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDV 309 (576)
Q Consensus 235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di 309 (576)
.++..+.....+.-|.+.-++.+..++..+..+...+..+..+|.....+...+.++....+.+|..-..+..+.
T Consensus 32 eLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~ 106 (140)
T PF10473_consen 32 ELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSL 106 (140)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344444555556666667777777777777777777777777776666666666666666655554444333333
No 129
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.07 E-value=13 Score=41.99 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=10.8
Q ss_pred hcCCHHHHHHHHHHHHHHH
Q 008135 302 QTINARDVERMRRELQAVE 320 (576)
Q Consensus 302 Q~~s~~di~r~~~Er~~L~ 320 (576)
-++.+.+-+.+..++..|.
T Consensus 204 ~~l~~~E~e~L~~e~~~L~ 222 (563)
T TIGR00634 204 ADLQPGEDEALEAEQQRLS 222 (563)
T ss_pred CCcCCCcHHHHHHHHHHHh
Confidence 4555666666665555543
No 130
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=93.84 E-value=18 Score=42.74 Aligned_cols=100 Identities=14% Similarity=0.295 Sum_probs=49.6
Q ss_pred HHHHhccCCCChHH------HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH-------H
Q 008135 224 SEMEGAMTGPTERE------KLEKEKCVLEEDLNKFNAI------------IGELNMRKEKMEKLVEEKERE-------I 278 (576)
Q Consensus 224 ~~le~l~~~~~~l~------~l~~~~~~L~~D~~K~~~~------------i~~l~~~~~~~e~~l~~l~~E-------l 278 (576)
..|+++.+-|+..+ .|+.++..+..|++-++.. ....+.-+....++|..++.. .
T Consensus 1047 ~AL~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~i 1126 (1439)
T PF12252_consen 1047 GALQALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSI 1126 (1439)
T ss_pred HHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 33555555665433 7888888888887777732 222333344444444444321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHH
Q 008135 279 GKKVEEHKRICEENEEFKKRVKL-----QTINARDVERMRRELQAVERDI 323 (576)
Q Consensus 279 e~~~~e~~~l~~e~~eL~~~l~~-----Q~~s~~di~r~~~Er~~L~~~l 323 (576)
...-..+..|++|+.=|+..-.. ..+.=.||+.+...++.+...|
T Consensus 1127 kK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL 1176 (1439)
T PF12252_consen 1127 KKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKL 1176 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhh
Confidence 11113334444444444433222 2344456666666665555444
No 131
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=93.80 E-value=8.1 Score=38.70 Aligned_cols=69 Identities=22% Similarity=0.281 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHh
Q 008135 397 ALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQF-----------HINEMETQLNLLSKETQEITKRC 465 (576)
Q Consensus 397 ~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~-----------kl~~l~~ql~~lk~e~eee~~~~ 465 (576)
.|..+..++...-......+..|+.+++++...|.....++..|.. +|..|..+++.++.+-+++....
T Consensus 64 ~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel 143 (258)
T PF15397_consen 64 QLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDEL 143 (258)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666677888999999999999998888888765 55567777777766666554433
No 132
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.76 E-value=1.5 Score=42.15 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 492 EVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKE 531 (576)
Q Consensus 492 ~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~ 531 (576)
+++..++..+.-+. ++.+.+..+=..|+++....|.
T Consensus 151 DE~~~L~l~~~~~e----~k~~~l~~En~~Lv~Rwm~~k~ 186 (194)
T PF08614_consen 151 DELQALQLQLNMLE----EKLRKLEEENRELVERWMQRKA 186 (194)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554444444 5666677777777776666654
No 133
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.70 E-value=1.4 Score=45.85 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (576)
Q Consensus 265 ~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~ 301 (576)
..++.++..++.|.+....+++.++.+.++|..++..
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555555555444433
No 134
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=93.65 E-value=4.8 Score=39.12 Aligned_cols=63 Identities=24% Similarity=0.348 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (576)
Q Consensus 239 l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~ 301 (576)
+++++..+.+|.++++.-.+..+.+.+..++....+++..+....|...+-++...|+.+|..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 556666666666666666655555555555555555555555555666666666666665543
No 135
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.29 E-value=29 Score=43.51 Aligned_cols=43 Identities=9% Similarity=0.093 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008135 263 RKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTIN 305 (576)
Q Consensus 263 ~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s 305 (576)
.+......+...+.++...+.++..++.+...++.++..-.-|
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~ 326 (1353)
T TIGR02680 284 DLGRARDELETAREEERELDARTEALEREADALRTRLEALQGS 326 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3333444444444444444444444444444454444444333
No 136
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.25 E-value=3.2 Score=41.05 Aligned_cols=52 Identities=21% Similarity=0.318 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008135 307 RDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMEC 358 (576)
Q Consensus 307 ~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~y 358 (576)
+++..|+..+..|+..|..++..+......+..+.-.|....+++..+..+|
T Consensus 53 eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 53 EELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555444444444444444555554444443
No 137
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.21 E-value=16 Score=40.37 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=12.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 429 KIEGKRKRIDALQFHINEMETQLNLLSKE 457 (576)
Q Consensus 429 ~ieek~~~l~~Le~kl~~l~~ql~~lk~e 457 (576)
.+.+.+.+++.++.++..+..+++.++.+
T Consensus 318 ~l~~~~~~~~~l~~~~~~l~~~~~~~~~~ 346 (498)
T TIGR03007 318 ELAEAEAEIASLEARVAELTARIERLESL 346 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433
No 138
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=93.20 E-value=3.3 Score=40.63 Aligned_cols=28 Identities=11% Similarity=0.268 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 008135 283 EEHKRICEENEEFKKRVKLQTINARDVE 310 (576)
Q Consensus 283 ~e~~~l~~e~~eL~~~l~~Q~~s~~di~ 310 (576)
.-+..|++.+..|...-.+.-++.+|++
T Consensus 112 kyiReLEQaNDdLErakRati~sleDfe 139 (333)
T KOG1853|consen 112 KYIRELEQANDDLERAKRATIYSLEDFE 139 (333)
T ss_pred HHHHHHHHhccHHHHhhhhhhhhHHHHH
Confidence 3344444444455444445555555553
No 139
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.18 E-value=10 Score=38.06 Aligned_cols=60 Identities=20% Similarity=0.317 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 242 EKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (576)
Q Consensus 242 ~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~ 301 (576)
++..++.+...++.-|+.+...+.++..++.++++++.....+++.++.++.++...|..
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444555555555555544433
No 140
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.08 E-value=11 Score=37.95 Aligned_cols=58 Identities=14% Similarity=0.337 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 008135 267 MEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAE 327 (576)
Q Consensus 267 ~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e 327 (576)
-+.++.+++.+......+++.|...+.++...++.. .+++++.+.++..|+.+|+.++
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~---~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDEL---QKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333344444444443333322 2344445555555555544443
No 141
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.00 E-value=0.028 Score=65.08 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhhh
Q 008135 61 QSSAIRAINAHLSS 74 (576)
Q Consensus 61 q~~~~~~i~~fL~~ 74 (576)
-..+++.|..|+.+
T Consensus 72 Lk~l~~~i~~yy~e 85 (713)
T PF05622_consen 72 LKKLLRNIKSYYQE 85 (713)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666666643
No 142
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.88 E-value=9.2 Score=36.67 Aligned_cols=44 Identities=9% Similarity=0.035 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhhhhhCCcccccchHHHHHHHHHHHHH-HcCCC
Q 008135 146 LALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNY-IEGKD 191 (576)
Q Consensus 146 l~~L~WLv~l~~~~~~~~~~~~~~~~~~~~~~y~~~~Y~~f-l~g~d 191 (576)
..+++|++-++...+.+....- +.....|....++...+ .+|=|
T Consensus 43 g~A~Glm~~f~~l~e~v~~l~i--dd~~~~f~~~~~tl~~LE~~GFn 87 (190)
T PF05266_consen 43 GMAVGLMVTFANLAEKVKKLQI--DDSRSSFESLMKTLSELEEHGFN 87 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHccc--CCcHHHHHHHHHHHHHHHHcCCc
Confidence 3677888888877776665432 22355677777888777 44433
No 143
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.72 E-value=7.2 Score=35.02 Aligned_cols=108 Identities=15% Similarity=0.221 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 008135 418 SLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAE---EAKKMEEDIQTEAHNLDMVEREAVEVL 494 (576)
Q Consensus 418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~---Ei~kl~eele~~~~~~~~~~~ea~~el 494 (576)
.++.++..+...+.+....+..+...+.............++.+....+. .+..++.++...+..+. +...+.
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~----~l~~~~ 82 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEIN----ELKAEA 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 34444444444444444444444444444444444444444444443333 44444555554432222 222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 495 KASESKFQEAIRQCEEEIQIRALDLFALVDSVSKY 529 (576)
Q Consensus 495 ~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~ 529 (576)
..++..+.......++++..+..++..+..++...
T Consensus 83 ~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 83 ESAKAELEESEASWEEQKEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555566666666666666555433
No 144
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.59 E-value=7.9 Score=35.16 Aligned_cols=6 Identities=50% Similarity=0.866 Sum_probs=2.2
Q ss_pred HHHHHH
Q 008135 246 LEEDLN 251 (576)
Q Consensus 246 L~~D~~ 251 (576)
|+.|++
T Consensus 29 LEreLe 34 (140)
T PF10473_consen 29 LERELE 34 (140)
T ss_pred HHHHHH
Confidence 333333
No 145
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.39 E-value=8 Score=41.28 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGK 280 (576)
Q Consensus 236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~ 280 (576)
.+.+-.+...|+.|.....+....++.+..+++.++..+.+|+..
T Consensus 356 ~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 356 YELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555666666666665555543
No 146
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.38 E-value=26 Score=40.67 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 008135 487 EREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVD----------SVSKYKERMESKISKMNKGISETALTVSE 553 (576)
Q Consensus 487 ~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~----------~i~k~K~~i~~~i~~~~~~~~~~~~~i~~ 553 (576)
|.+-.++|+..+.+++.+...++.-+.++...-..+.. .=...+..|.+.|.++.+.+-+.+..|++
T Consensus 634 Er~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~ 710 (717)
T PF10168_consen 634 EREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKN 710 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555444444444444332222110 01455666666666665555555555543
No 147
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.22 E-value=26 Score=40.28 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRI 288 (576)
Q Consensus 239 l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l 288 (576)
..+....+..-+.|+...|..++..++.+.+...+|+.+.+....+....
T Consensus 648 ~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 648 AEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666677777777776666666655555555544444444333
No 148
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.89 E-value=8.8 Score=35.19 Aligned_cols=31 Identities=13% Similarity=0.304 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 248 EDLNKFNAIIGELNMRKEKMEKLVEEKEREI 278 (576)
Q Consensus 248 ~D~~K~~~~i~~l~~~~~~~e~~l~~l~~El 278 (576)
.++.+++.-+...+..+..++.+...++..+
T Consensus 73 ~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~ 103 (151)
T PF11559_consen 73 NDVERLKEQLEELERELASAEEKERQLQKQL 103 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 149
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=91.77 E-value=5.6 Score=32.39 Aligned_cols=73 Identities=14% Similarity=0.275 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135 399 ESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQT 478 (576)
Q Consensus 399 ~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~ 478 (576)
.+|.+.|.........+......+.+++...+...-.++..+..++-+|+.....+++.++++ |..|+.+|+.
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeE-------I~rLr~eLe~ 75 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEE-------IARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence 445555555555555566666777777777777777888888888888888888888877766 5555555544
No 150
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.59 E-value=37 Score=40.74 Aligned_cols=27 Identities=15% Similarity=0.285 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008135 319 VERDIADAENARNEWESKTWDLDSKLG 345 (576)
Q Consensus 319 L~~~l~~~e~~~~~l~~~~~~~e~~l~ 345 (576)
+...+..+...+........+....+.
T Consensus 401 ~~~~~~~~~~~~~e~~~~~~~~~~~l~ 427 (908)
T COG0419 401 LSAALEEIQEELEELEKELEELERELE 427 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444443333333333
No 151
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=91.39 E-value=18 Score=40.82 Aligned_cols=43 Identities=26% Similarity=0.395 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLS 455 (576)
Q Consensus 413 ~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk 455 (576)
.+.+..|.++++.++..+++.+..-..|..-+..|..++++++
T Consensus 215 le~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 215 LEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344455555555555555544444444444445545555444
No 152
>PRK10869 recombination and repair protein; Provisional
Probab=91.37 E-value=29 Score=39.09 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=29.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Q 008135 205 LEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLE 247 (576)
Q Consensus 205 l~~~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~ 247 (576)
+........+++..|+-.+.+++.+.-.|+..+.|+.+...|.
T Consensus 176 l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~ 218 (553)
T PRK10869 176 HQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLA 218 (553)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 3344445566677778888888886667777777777666544
No 153
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.32 E-value=2.7 Score=39.43 Aligned_cols=35 Identities=11% Similarity=0.354 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008135 286 KRICEENEEFKKRVKLQTINARDVERMRRELQAVERD 322 (576)
Q Consensus 286 ~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~ 322 (576)
..++..+..|+. ....+|++++.++..+...+.+.
T Consensus 126 ~~l~~kL~~l~~--~~~~vs~ee~~~~~~~~~~~~k~ 160 (169)
T PF07106_consen 126 EELEEKLEKLRS--GSKPVSPEEKEKLEKEYKKWRKE 160 (169)
T ss_pred HHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHHHHH
Confidence 334444444544 34557888888887776655443
No 154
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.27 E-value=20 Score=37.10 Aligned_cols=83 Identities=11% Similarity=0.104 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEEN----EEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNE 332 (576)
Q Consensus 257 i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~----~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~ 332 (576)
++.+..++..|+..+..+-.|.+....+....+... .+|...+..-+-.+-||+-+-.|...|...|..++...+-
T Consensus 135 LEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l 214 (319)
T PF09789_consen 135 LEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKEL 214 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555544333333 3344445554556668888888888888888777666655
Q ss_pred HHHhhhH
Q 008135 333 WESKTWD 339 (576)
Q Consensus 333 l~~~~~~ 339 (576)
+.+.+.-
T Consensus 215 ~k~~i~K 221 (319)
T PF09789_consen 215 LKQTINK 221 (319)
T ss_pred HHHHHHH
Confidence 5554433
No 155
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.26 E-value=3.4 Score=39.75 Aligned_cols=7 Identities=43% Similarity=0.805 Sum_probs=0.0
Q ss_pred HHHHHHH
Q 008135 246 LEEDLNK 252 (576)
Q Consensus 246 L~~D~~K 252 (576)
++.|+..
T Consensus 79 l~~ELae 85 (194)
T PF08614_consen 79 LQEELAE 85 (194)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3333333
No 156
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.15 E-value=5.8 Score=31.68 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 200 GFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKE 265 (576)
Q Consensus 200 ~~~~kl~~~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~ 265 (576)
+..++|...+....+.+..|+.++.+|.. .-..+..++..|.....+++.-...++.++.
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke------~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKE------KNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777888888888888887777764 2333444444444444444444444444433
No 157
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.14 E-value=15 Score=35.37 Aligned_cols=59 Identities=25% Similarity=0.364 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 273 EKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEW 333 (576)
Q Consensus 273 ~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l 333 (576)
.++..+.....++..+..++..|+.-+++.++- +.+.+..+...+...+...+..+..|
T Consensus 86 ~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~--eReeL~~kL~~~~~~l~~~~~ki~~L 144 (194)
T PF15619_consen 86 ELERKLKDKDEELLKTKDELKHLKKLSEDKNLA--EREELQRKLSQLEQKLQEKEKKIQEL 144 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444455555555555555443 33444444444444444333333333
No 158
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.12 E-value=18 Score=36.21 Aligned_cols=102 Identities=20% Similarity=0.265 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008135 243 KCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERD 322 (576)
Q Consensus 243 ~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~ 322 (576)
+..|+..++|+..-..+-+-.++.++..+..-+...+....+...|+.|+..|... -+.+-+-+++|..+
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~----------c~~lek~rqKlshd 89 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMES----------CENLEKTRQKLSHD 89 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHH----------HHHHHHHHHHhhHH
Confidence 34444444444444444444444444444444444444555556666666666443 33333344444444
Q ss_pred H-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008135 323 I-------ADAENARNEWESKTWDLDSKLGRKFKELEAL 354 (576)
Q Consensus 323 l-------~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l 354 (576)
+ .-++.++......+..++..+.+...+||+.
T Consensus 90 lq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 90 LQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3344444444444444455455555555544
No 159
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.03 E-value=28 Score=38.26 Aligned_cols=55 Identities=24% Similarity=0.219 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 008135 256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVE 310 (576)
Q Consensus 256 ~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~ 310 (576)
+++.-.++-..+-.+|.+++.||...+.++...+.|++++......-+-+-++++
T Consensus 94 LLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E 148 (772)
T KOG0999|consen 94 LLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVE 148 (772)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Confidence 3444444555566777777777777777777777777777776666555555544
No 160
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.02 E-value=8.3 Score=44.66 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=14.7
Q ss_pred cchhhhhchHHHHHHHHHHHHHHHH
Q 008135 386 MGVDYKSTLKPALESFADDVKRSSV 410 (576)
Q Consensus 386 ~~~~~k~~ik~~L~~l~~ei~~~~~ 410 (576)
++..-...|+..|.+...+|.+.+.
T Consensus 682 L~~~Q~~~I~~iL~~~~~~I~~~v~ 706 (717)
T PF10168_consen 682 LSESQKRTIKEILKQQGEEIDELVK 706 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556677776666665554333
No 161
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.99 E-value=38 Score=39.70 Aligned_cols=14 Identities=7% Similarity=0.318 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 008135 492 EVLKASESKFQEAI 505 (576)
Q Consensus 492 ~el~~~~~~~ee~~ 505 (576)
+.|...-.+++++.
T Consensus 390 ~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 390 QLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555544
No 162
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=90.72 E-value=33 Score=38.67 Aligned_cols=10 Identities=30% Similarity=0.321 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 008135 91 DITDVIKFLI 100 (576)
Q Consensus 91 ~f~~i~~~L~ 100 (576)
.+.+.+.|++
T Consensus 37 ~ll~al~~~~ 46 (563)
T TIGR00634 37 MIIDALSLLG 46 (563)
T ss_pred HHHHHHHHHh
Confidence 3444444443
No 163
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=90.59 E-value=18 Score=35.23 Aligned_cols=32 Identities=9% Similarity=0.289 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135 305 NARDVERMRRELQAVERDIADAENARNEWESK 336 (576)
Q Consensus 305 s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~ 336 (576)
+...+.++..+++.+..++..++.....+-.+
T Consensus 67 ~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~r 98 (207)
T PF05010_consen 67 SEAEIQKLLKERDQAYADLNSLEKSFSDLHKR 98 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHH
Confidence 45567777777777777777776666544433
No 164
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.55 E-value=24 Score=36.62 Aligned_cols=138 Identities=14% Similarity=0.203 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHhhhhHHHHH
Q 008135 411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQ-EITKRCAEEAKKMEEDIQTEAHNLDMVERE 489 (576)
Q Consensus 411 ~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~e-ee~~~~~~Ei~kl~eele~~~~~~~~~~~e 489 (576)
+..+++..|+.++..+...+.+...++..|..++............... .+...+-.+++++...++.+..+++++..|
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDE 155 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDE 155 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666777888888888888888888888887766554433221110 222344445556666666655555544322
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008135 490 AVEVLKASESKFQEAIRQ---CEEEIQIRALDLFALV----------DSVSKYKERMESKISKMNKGISETALTVSEAYK 556 (576)
Q Consensus 490 a~~el~~~~~~~ee~~~e---~eeek~~l~~el~~l~----------~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~ 556 (576)
- +++..+ |-.....|..+|.-++ |.+-.-.-.++..|..+.++.--+...| ..||
T Consensus 156 k-----------eEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i-~KYK 223 (319)
T PF09789_consen 156 K-----------EELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTI-NKYK 223 (319)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 1 122221 1133455555665555 4443334456666666655544444444 4566
Q ss_pred cccc
Q 008135 557 NSLP 560 (576)
Q Consensus 557 ~~~~ 560 (576)
..+.
T Consensus 224 ~~le 227 (319)
T PF09789_consen 224 SALE 227 (319)
T ss_pred HHHH
Confidence 6666
No 165
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=90.52 E-value=36 Score=38.66 Aligned_cols=103 Identities=15% Similarity=0.138 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 008135 240 EKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEH-------KRICEENEEFKKRVKLQTINARDVERM 312 (576)
Q Consensus 240 ~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~-------~~l~~e~~eL~~~l~~Q~~s~~di~r~ 312 (576)
......|.++...++.-++.++.+.....+.+...+.|.+....++ +.-..-...|++=|.+|.-+-.--..-
T Consensus 161 q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~w 240 (739)
T PF07111_consen 161 QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAW 240 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHH
Confidence 3344444444444444444444444333333333333333333222 222223445555555554332222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 008135 313 RRELQAVERDIADAENARNEWESKTWDLDS 342 (576)
Q Consensus 313 ~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~ 342 (576)
+.|+..|..++..++..++.|.....=+.+
T Consensus 241 e~Er~~L~~tVq~L~edR~~L~~T~ELLqV 270 (739)
T PF07111_consen 241 EPEREELLETVQHLQEDRDALQATAELLQV 270 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888877777666544444
No 166
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=90.52 E-value=17 Score=34.97 Aligned_cols=83 Identities=14% Similarity=0.297 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008135 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRE 315 (576)
Q Consensus 236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~E 315 (576)
++.+..++..|..=-..-...+...+..-..+++.|....+|+......+...+.....+...+...+ +++.+.+.+
T Consensus 28 l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~---~el~k~~~~ 104 (194)
T PF15619_consen 28 LQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKD---EELLKTKDE 104 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 33344444444332222222344444444555666666666666666666666666666655554432 234444444
Q ss_pred HHHHHH
Q 008135 316 LQAVER 321 (576)
Q Consensus 316 r~~L~~ 321 (576)
...|.+
T Consensus 105 l~~L~~ 110 (194)
T PF15619_consen 105 LKHLKK 110 (194)
T ss_pred HHHHHH
Confidence 444443
No 167
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=90.37 E-value=3.4 Score=48.12 Aligned_cols=6 Identities=0% Similarity=-0.341 Sum_probs=0.0
Q ss_pred CCCCCC
Q 008135 15 QPTPDL 20 (576)
Q Consensus 15 ~~~~~~ 20 (576)
||.++|
T Consensus 23 ~~~~~~ 28 (722)
T PF05557_consen 23 PNNFIF 28 (722)
T ss_dssp ------
T ss_pred cccccc
Confidence 333333
No 168
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=90.23 E-value=37 Score=38.38 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 008135 419 LQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASE 498 (576)
Q Consensus 419 Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~~~~ 498 (576)
..+..+.+...|+++..--+.|-..+..+....++.-.--.+-..+|...|..|..-|+.-+++...+..+-..+|..-.
T Consensus 652 ~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k 731 (786)
T PF05483_consen 652 HEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYK 731 (786)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34456666777888888888888888888888888877777777899999999999999988888777666666666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 499 SKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKIS 538 (576)
Q Consensus 499 ~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~ 538 (576)
.+=++.. .-+..|.-+|..+-.-+...|..+.....
T Consensus 732 ~KE~E~~----s~k~sLE~ELs~lk~el~slK~QLk~e~~ 767 (786)
T PF05483_consen 732 KKEQEQS----SHKASLELELSNLKNELSSLKKQLKTERT 767 (786)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5555544 45666666666666655555554444443
No 169
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.12 E-value=13 Score=32.90 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREI 278 (576)
Q Consensus 236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~El 278 (576)
++.+...+..+.+.+..++.-+..++.....+...|..+-.+.
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555544443
No 170
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.91 E-value=46 Score=38.98 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135 269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ 302 (576)
Q Consensus 269 ~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q 302 (576)
+++.++..++...+.++...+.....++..+...
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~ 270 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKALQNG 270 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556666666655556666666666666666543
No 171
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=89.89 E-value=20 Score=34.83 Aligned_cols=9 Identities=0% Similarity=0.195 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 008135 450 QLNLLSKET 458 (576)
Q Consensus 450 ql~~lk~e~ 458 (576)
+++..+..+
T Consensus 151 ei~~v~~~~ 159 (207)
T PF05010_consen 151 EIAQVRSKH 159 (207)
T ss_pred HHHHHHHHh
Confidence 333333333
No 172
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=89.85 E-value=15 Score=33.30 Aligned_cols=91 Identities=16% Similarity=0.246 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 008135 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIAD 325 (576)
Q Consensus 246 L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~ 325 (576)
-.+++..|+++-+..+.+.-+...++...-.-++.....+..+..+++-+ .+=|.+|...+++.|+.
T Consensus 29 s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l-------------~dP~RkEv~~vRkkID~ 95 (159)
T PF04949_consen 29 SRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVL-------------ADPMRKEVEMVRKKIDS 95 (159)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh-------------ccchHHHHHHHHHHHHH
Confidence 35677888888888777776666666555444444444445554444422 33466777777777777
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Q 008135 326 AENARNEWESKTWDLDSKLGRKFK 349 (576)
Q Consensus 326 ~e~~~~~l~~~~~~~e~~l~~~~e 349 (576)
....+.-+-+.+...+.+|...++
T Consensus 96 vNreLkpl~~~cqKKEkEykeale 119 (159)
T PF04949_consen 96 VNRELKPLGQSCQKKEKEYKEALE 119 (159)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 777777777776666665544433
No 173
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.55 E-value=22 Score=35.63 Aligned_cols=58 Identities=17% Similarity=0.318 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 217 EELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGK 280 (576)
Q Consensus 217 ~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~ 280 (576)
+..++.+.++.. ....+..++..+...++.++.|+..++..+...++++.+++.+++.
T Consensus 38 ~~sQ~~id~~~~------e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 38 QQSQKRIDQWDD------EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555442 3455666666666666666666666666666666666666555543
No 174
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=89.41 E-value=23 Score=34.92 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 245 VLEEDLNKFNAIIGELNMRKEKMEKLVEEK 274 (576)
Q Consensus 245 ~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l 274 (576)
+|+.|+...++.-+++...+.++++....+
T Consensus 95 ~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 95 QLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 344444444444444444444443333333
No 175
>PF09762 KOG2701: Coiled-coil domain-containing protein (DUF2037); InterPro: IPR019159 This entry represents a family of coiled-coil-containing proteins conserved from plants to vertebrates. It includes Drosophila fidipidine, whose function is unknown.
Probab=89.38 E-value=9.5 Score=36.28 Aligned_cols=84 Identities=17% Similarity=0.396 Sum_probs=58.0
Q ss_pred HHHHHHHhhhCCCCC-CCCCCCCCCHHHHHHH---HHHHHHcCCCCC------------CcChH--hHHHHHHHhcCCCC
Q 008135 65 IRAINAHLSSHSFHI-AFPLKQVPSVKDITDV---IKFLISQLDYPS------------TTKFE--EDLFVVLKSLSCPF 126 (576)
Q Consensus 65 ~~~i~~fL~~~~~~~-~~k~l~~pt~k~f~~i---~~~L~~~ld~~~------------~~k~e--eev~~~lk~l~yP~ 126 (576)
.+.|++.|..-||.. -++.|. .|-.| ..|.....++.+ +.|.. +.|+..|+.++|||
T Consensus 2 ~~~I~~~L~~aGY~RaRv~~Ls-----~fDkivGGi~W~i~~~~~~v~~dllf~E~~~i~~Ki~~~ekIv~~L~~m~CP~ 76 (182)
T PF09762_consen 2 LQEILDLLSAAGYHRARVKSLS-----PFDKIVGGITWCITRCNVDVDVDLLFQENSTIGQKIALCEKIVEALPKMKCPH 76 (182)
T ss_pred HHHHHHHHHHcCccHHHhcCCC-----hHHHHHhHHHHHHHhcCCCCCccchhcccccHHHHHHHHHHHHHHHHhCCCCC
Confidence 367899999999973 233332 35444 555555555322 22222 37999999999999
Q ss_pred cccccccccCCCCCChHHHHHHHHHHHHHHH
Q 008135 127 KINKSTLRSPNSPHNWPAYLALIHWLVQIAS 157 (576)
Q Consensus 127 ~i~ks~l~~~g~~h~wp~~l~~L~WLv~l~~ 157 (576)
.|.--+|.- -..|++.-++.||+.-+.
T Consensus 77 ~l~phQi~g----lDf~~i~PVvqWLvkr~~ 103 (182)
T PF09762_consen 77 RLEPHQIQG----LDFIHIFPVVQWLVKRVL 103 (182)
T ss_pred CCCHHHHhc----CCHHHHHHHHHHHHHHHH
Confidence 998888753 267899999999997543
No 176
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.36 E-value=16 Score=32.82 Aligned_cols=28 Identities=29% Similarity=0.308 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 236 REKLEKEKCVLEEDLNKFNAIIGELNMR 263 (576)
Q Consensus 236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~ 263 (576)
..........+..|+.....+....+.+
T Consensus 19 ~~~~~~~~~~~~~dl~~q~~~a~~Aq~~ 46 (132)
T PF07926_consen 19 EEDAEEQLQSLREDLESQAKIAQEAQQK 46 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666667776666665555543
No 177
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.31 E-value=5.4 Score=44.20 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=25.8
Q ss_pred CCCCCCCCCCCCC-CCCCCCChHHHHHHHHHHHHHhhhCCCC
Q 008135 38 SSRPSSIGMGRAS-AADLYTDRSHQSSAIRAINAHLSSHSFH 78 (576)
Q Consensus 38 ~sr~s~~g~~~~~-d~rpl~dk~~q~~~~~~i~~fL~~~~~~ 78 (576)
-||.-|.|.||-| +.-.-+--+......+.|-+-|...|++
T Consensus 142 VsR~RS~g~GGwSq~RY~R~vh~av~~~~reIee~L~~agld 183 (652)
T COG2433 142 VSRGRSLGPGGWSQNRYRRRVHGAVKRVVREIEEKLDEAGLD 183 (652)
T ss_pred EEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4677777777654 2112222346667778888888888775
No 178
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=89.26 E-value=35 Score=36.74 Aligned_cols=92 Identities=22% Similarity=0.219 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008135 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKK---VEEHKRICEENEEFKKRVKLQTINARDVERMRR 314 (576)
Q Consensus 238 ~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~---~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~ 314 (576)
+|.+-+..|+.+-.|=+..|..|+....-+++++.+|+-..-.. ..=+..|+..+++| ++|--+|.-
T Consensus 314 aLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeL----------IedKY~viL 383 (527)
T PF15066_consen 314 ALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEEL----------IEDKYRVIL 383 (527)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----------HHhHhHhhh
Confidence 45555666777777777777777777767777776665443221 23334455555555 456666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH
Q 008135 315 ELQAVERDIADAENARNEWESKTWD 339 (576)
Q Consensus 315 Er~~L~~~l~~~e~~~~~l~~~~~~ 339 (576)
|+..+.+.+..+...+...++...+
T Consensus 384 EKnd~~k~lqnLqe~la~tqk~LqE 408 (527)
T PF15066_consen 384 EKNDIEKTLQNLQEALANTQKHLQE 408 (527)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766666666655555554433
No 179
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.21 E-value=46 Score=37.98 Aligned_cols=85 Identities=13% Similarity=0.163 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 008135 269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ----TINARDVER-MRRELQAVERDIADAENARNEWESKTWDLDSK 343 (576)
Q Consensus 269 ~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q----~~s~~di~r-~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~ 343 (576)
..+..+.........++..+..+++.|-..|... .+-..|-.. -..+.+.+ +.++.+++.+
T Consensus 110 ~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeel--------------r~~L~~L~~e 175 (660)
T KOG4302|consen 110 PYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEEL--------------REHLNELQKE 175 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHH--------------HHHHHHHHHH
Confidence 3333444444445556666666777777777666 111111111 11233333 3333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccC
Q 008135 344 LGRKFKELEALSMECNQAMKRLKL 367 (576)
Q Consensus 344 l~~~~e~le~l~~~yn~~~~kl~l 367 (576)
.+..++.+...+...+.++.-||+
T Consensus 176 k~~Rlekv~~~~~~I~~l~~~Lg~ 199 (660)
T KOG4302|consen 176 KSDRLEKVLELKEEIKSLCSVLGL 199 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 555666666667777777776654
No 180
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.12 E-value=7.2 Score=43.24 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=6.4
Q ss_pred cceeEeeCCCC
Q 008135 369 TEIQYSLNSNG 379 (576)
Q Consensus 369 ~d~~~~ln~~~ 379 (576)
.|+-+..++.|
T Consensus 545 GDvi~v~~~sG 555 (652)
T COG2433 545 GDVILVEDPSG 555 (652)
T ss_pred CcEEEEEcCCC
Confidence 45666666554
No 181
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.99 E-value=6.8 Score=40.71 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 311 RMRRELQAVERDIADAENARNEWES 335 (576)
Q Consensus 311 r~~~Er~~L~~~l~~~e~~~~~l~~ 335 (576)
+...+++.+...++.....++.|++
T Consensus 110 ~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 110 EFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555544
No 182
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=88.42 E-value=33 Score=35.35 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENE 293 (576)
Q Consensus 241 ~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~ 293 (576)
.-.....+|.++++..+..+......++-++..+..+...++.+-..|.+|..
T Consensus 120 ~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 120 EVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 34445556666666666666666666666666666655555555555544433
No 183
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=88.41 E-value=57 Score=38.09 Aligned_cols=31 Identities=26% Similarity=0.421 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008135 317 QAVERDIADAENARNEWESKTWDLDSKLGRK 347 (576)
Q Consensus 317 ~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~ 347 (576)
..+...+..++.....+..++..++.++...
T Consensus 662 e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~e 692 (769)
T PF05911_consen 662 ESLETRLKDLEAEAEELQSKISSLEEELEKE 692 (769)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444544444444333
No 184
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=88.31 E-value=17 Score=39.28 Aligned_cols=69 Identities=10% Similarity=0.297 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHH
Q 008135 275 EREIGKKVEEHKRICEENEEFKKRVKLQTI--NARDVERMRRELQAVERDIADAENARNEWE---SKTWDLDSK 343 (576)
Q Consensus 275 ~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~--s~~di~r~~~Er~~L~~~l~~~e~~~~~l~---~~~~~~e~~ 343 (576)
..+.......+.+|+.-+++|++-|...++ ++..++.+..++..+..+|.+++.-+..+. +++|+.|+.
T Consensus 212 ~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~ 285 (424)
T PF03915_consen 212 SEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQ 285 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 333444445566777777778887777655 667788888888888888877765555444 566766654
No 185
>PRK14011 prefoldin subunit alpha; Provisional
Probab=87.91 E-value=21 Score=32.58 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008135 418 SLQQQSSEMAAKIEGKRKRIDALQFH 443 (576)
Q Consensus 418 ~Lq~~l~~l~~~ieek~~~l~~Le~k 443 (576)
.++...+.+...++++...+..++..
T Consensus 99 ~l~~~~~~l~~~i~~~~~~~~~l~~~ 124 (144)
T PRK14011 99 ELDKTKKEGNKKIEELNKEITKLRKE 124 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 186
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=87.90 E-value=17 Score=32.05 Aligned_cols=43 Identities=37% Similarity=0.575 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKERE 277 (576)
Q Consensus 235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~E 277 (576)
+...|+.+-..|..++.+|..++.....+.....++...-...
T Consensus 33 ~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~ 75 (126)
T PF13863_consen 33 REEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKK 75 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5667888888999999999999998887776655554444333
No 187
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=87.88 E-value=30 Score=34.25 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 248 EDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (576)
Q Consensus 248 ~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~ 301 (576)
+.+.+-.+.+++-+..+.++.+.+..|..|-.+...+++++.+++..|...|..
T Consensus 18 ~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkq 71 (230)
T PF10146_consen 18 NEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQ 71 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444445555555555666555555556666666666666555433
No 188
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.79 E-value=34 Score=34.76 Aligned_cols=34 Identities=9% Similarity=0.080 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 491 VEVLKASESKFQEAIRQCEEEIQIRALDLFALVD 524 (576)
Q Consensus 491 ~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~ 524 (576)
...+...+.++..+...+...+..+..++..+..
T Consensus 125 ~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifp 158 (302)
T PF10186_consen 125 QNELEERKQRLSQLQSQLARRRRQLIQELSEIFP 158 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445555555555555556666666666666553
No 189
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.54 E-value=23 Score=32.46 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 492 EVLKASESKFQEAIRQCEEEIQIRALDLFALVDSV 526 (576)
Q Consensus 492 ~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i 526 (576)
+++..++..++.....+..+.++-..++..|-+.+
T Consensus 115 ee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 115 EELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555566666666665555443
No 190
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.41 E-value=39 Score=36.27 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (576)
Q Consensus 235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL 295 (576)
.++..+.....+...+...+.-...+++..+..++++.+++..+.....+++.+++++..|
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l 408 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKL 408 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555556666666666666666666666666665555555444444
No 191
>PRK10869 recombination and repair protein; Provisional
Probab=87.28 E-value=57 Score=36.79 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=14.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHHH
Q 008135 300 KLQTINARDVERMRRELQAVER 321 (576)
Q Consensus 300 ~~Q~~s~~di~r~~~Er~~L~~ 321 (576)
+..++.+.+-+++..++..|.+
T Consensus 198 ~~~~l~~gE~eeL~~e~~~L~n 219 (553)
T PRK10869 198 NEFAPQPGEFEQIDEEYKRLAN 219 (553)
T ss_pred HhCCCCCCcHHHHHHHHHHHHH
Confidence 4466677777777777766654
No 192
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=87.28 E-value=61 Score=37.16 Aligned_cols=33 Identities=30% Similarity=0.340 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 234 TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEK 266 (576)
Q Consensus 234 ~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~ 266 (576)
.....++.....++.|++|+...-..+..+...
T Consensus 90 ~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~ 122 (698)
T KOG0978|consen 90 TEVDELEQQLEDLQADLEKIRRRSNKLNKHLAE 122 (698)
T ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777777666555555444
No 193
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.93 E-value=50 Score=35.82 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc
Q 008135 344 LGRKFKELEALSMECNQAMKRL 365 (576)
Q Consensus 344 l~~~~e~le~l~~~yn~~~~kl 365 (576)
+....-+++..-..|+.++.++
T Consensus 344 ~~~L~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 344 MSVLQRDVENAQRAYDAAMQRY 365 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445566666554
No 194
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=86.85 E-value=20 Score=34.25 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHH
Q 008135 280 KKVEEHKRICEENEEFKKRVKL-QTINARDVERMRRELQAVERDI 323 (576)
Q Consensus 280 ~~~~e~~~l~~e~~eL~~~l~~-Q~~s~~di~r~~~Er~~L~~~l 323 (576)
..-.+++.++.++.+|+..++. ...+|+-++.++.+...+...+
T Consensus 107 ~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~a 151 (188)
T PF03962_consen 107 ELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAA 151 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3445566666677777776664 3456666666665555444333
No 195
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=86.45 E-value=31 Score=32.92 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGK 280 (576)
Q Consensus 238 ~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~ 280 (576)
.++.+...+...+..-+..-..-..+..+.-.+|.-++.+|+.
T Consensus 57 kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~ 99 (205)
T KOG1003|consen 57 KLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELER 99 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444444444444444444444444455555555555544443
No 196
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=86.40 E-value=6 Score=32.59 Aligned_cols=63 Identities=13% Similarity=0.226 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008135 276 REIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTW 338 (576)
Q Consensus 276 ~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~ 338 (576)
.|++..+..+.++...++.+..++....+|+++-..+-.|...+...+...++++..|++...
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 345555556666777778888899999999999999999999999999999999988887543
No 197
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.32 E-value=16 Score=35.54 Aligned_cols=80 Identities=15% Similarity=0.257 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 008135 287 RICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK 366 (576)
Q Consensus 287 ~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~ 366 (576)
....++..++..++.++-=.++.+.++.+...|+.++++....++.++.++..+........++..++.++|+.+-.++.
T Consensus 131 ~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 131 KAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 34455555555555544323334444444555555555555555555555555555555555666667777777665543
No 198
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=86.24 E-value=7.4 Score=33.43 Aligned_cols=71 Identities=18% Similarity=0.277 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008135 269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWD 339 (576)
Q Consensus 269 ~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~ 339 (576)
..+..+..+......+++.++.+...+.+.|....-+.++++.+..+...+...+..++.....++.+...
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555556666677777777766655444677777777777777777776666666555433
No 199
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=85.99 E-value=49 Score=34.81 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLS 455 (576)
Q Consensus 413 ~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk 455 (576)
...+..++..+......+.+++..+..++.++..+..+|+...
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~ 262 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQ 262 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555655665556666665555555444
No 200
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=85.97 E-value=43 Score=34.13 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEIT 462 (576)
Q Consensus 411 ~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~ 462 (576)
.......+|+.++......+.++.--+..++..+.....++.++..-++.+.
T Consensus 155 kaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~ 206 (305)
T PF14915_consen 155 KAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQ 206 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3334444555555555555555555555555555555555555555444443
No 201
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=85.42 E-value=54 Score=34.80 Aligned_cols=10 Identities=20% Similarity=0.527 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 008135 492 EVLKASESKF 501 (576)
Q Consensus 492 ~el~~~~~~~ 501 (576)
.-+...+.+|
T Consensus 320 sslemdeery 329 (552)
T KOG2129|consen 320 SSLEMDEERY 329 (552)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 202
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.12 E-value=59 Score=34.97 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhCCCCCCCC--CCCCCCHHHHHHHHHHHHHcCC
Q 008135 63 SAIRAINAHLSSHSFHIAFP--LKQVPSVKDITDVIKFLISQLD 104 (576)
Q Consensus 63 ~~~~~i~~fL~~~~~~~~~k--~l~~pt~k~f~~i~~~L~~~ld 104 (576)
.....|-.++..-||+..+. +..-|..-|.-..|-||...++
T Consensus 65 rla~siAq~ckdlgyrgD~gyqtfLypn~~dlR~ll~fLie~lp 108 (521)
T KOG1937|consen 65 RLANSIAQYCKDLGYRGDTGYQTFLYPNINDLRSLLIFLIEKLP 108 (521)
T ss_pred HHHHHHHHHHHHcCCCcccchhheecCCcccHHHHHHHHHhhCC
Confidence 35567777887778875443 3346777778888899999887
No 203
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=84.92 E-value=67 Score=35.46 Aligned_cols=20 Identities=5% Similarity=0.024 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 008135 283 EEHKRICEENEEFKKRVKLQ 302 (576)
Q Consensus 283 ~e~~~l~~e~~eL~~~l~~Q 302 (576)
-....++.++..|+..+...
T Consensus 275 P~v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 275 PDVIATKREIAQLEEQKEEE 294 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 34456677777777776554
No 204
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=84.75 E-value=34 Score=31.82 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEI 461 (576)
Q Consensus 413 ~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee 461 (576)
..++..|+....++.......+..-...+.++..++..+....+++...
T Consensus 49 ~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~ 97 (158)
T PF09744_consen 49 EVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQ 97 (158)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554444443444444444444444444333333
No 205
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=84.69 E-value=47 Score=33.46 Aligned_cols=83 Identities=17% Similarity=0.244 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCHHHHHH
Q 008135 237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK-----LQTINARDVER 311 (576)
Q Consensus 237 ~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~-----~Q~~s~~di~r 311 (576)
..++.+...|..|+..++.-......+...+......+...-......+..+...+.++-..+. ..+.+..++.+
T Consensus 48 ~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~ 127 (264)
T PF06008_consen 48 DPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQR 127 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHH
Confidence 3344444444444444444444444444444444444433333333444444444444444443 34557777776
Q ss_pred HHHHHHHH
Q 008135 312 MRRELQAV 319 (576)
Q Consensus 312 ~~~Er~~L 319 (576)
+..+-+.+
T Consensus 128 ~l~ea~~m 135 (264)
T PF06008_consen 128 ALAEAQRM 135 (264)
T ss_pred HHHHHHHH
Confidence 65555444
No 206
>PLN02939 transferase, transferring glycosyl groups
Probab=84.14 E-value=1e+02 Score=36.92 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 008135 413 LEELISLQQQSSEMAAKIEG 432 (576)
Q Consensus 413 ~~e~~~Lq~~l~~l~~~iee 432 (576)
.++...|+++++.+...+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~ 342 (977)
T PLN02939 323 LDQNQDLRDKVDKLEASLKE 342 (977)
T ss_pred hccchHHHHHHHHHHHHHHH
Confidence 34445566666666555554
No 207
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=84.13 E-value=60 Score=34.20 Aligned_cols=41 Identities=10% Similarity=0.156 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008135 512 IQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVS 552 (576)
Q Consensus 512 k~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~ 552 (576)
++-.......+-.-+.-.|.+-...|+++++.+..+..++-
T Consensus 542 KkyaSdKYkDiYtELSiaKakadcdIsrLKEqLkaAteALg 582 (593)
T KOG4807|consen 542 KKYASDKYKDIYTELSIAKAKADCDISRLKEQLKAATEALG 582 (593)
T ss_pred hhccccchhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHhc
Confidence 33344445555555566666666777777777666655553
No 208
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.08 E-value=71 Score=35.00 Aligned_cols=161 Identities=9% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhccCCC----------------ChHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 008135 205 LEKEKENVSEYVEELKKKVSEMEGAMTGP----------------TEREKLEKEKCVLEEDLNKFNAIIG----ELNMRK 264 (576)
Q Consensus 205 l~~~~~~~~~~~~~L~~~~~~le~l~~~~----------------~~l~~l~~~~~~L~~D~~K~~~~i~----~l~~~~ 264 (576)
+...+..+..++..++....+|+++.... ..+.....+...+...+......+. .+...+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~rL~a~~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (457)
T TIGR01000 95 EENQKQLLEQQLDNLKDQKKSLDTLKQSIENGRNQFPTDDSFGYRNLFNGYLAQVESLTSETQQQNDKSQTQNEAAEKTK 174 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 008135 265 EKMEKLVEEKEREIGKKVEEHKRICE-------------------ENEEFKKRVKLQTINARDVERMRRELQAVERDIAD 325 (576)
Q Consensus 265 ~~~e~~l~~l~~Ele~~~~e~~~l~~-------------------e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~ 325 (576)
..+...+..++.++...+.....+++ +...++..++........+..+..++..++.++.+
T Consensus 175 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~ 254 (457)
T TIGR01000 175 AQLDQQISKTDQKLQDYQALKNAISNGTKVANFNPYQSLYENYQAQLKSASDKDQKNQVKSTILATIQQQIDQLQKSIAS 254 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH------------HHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Q 008135 326 AENARNEW------------ESKTWDLDSKLG-RKFKELEALSMECNQAMKRL 365 (576)
Q Consensus 326 ~e~~~~~l------------~~~~~~~e~~l~-~~~e~le~l~~~yn~~~~kl 365 (576)
++.++..+ +.+...+..... ....++...-.++..+...+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l 307 (457)
T TIGR01000 255 YQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKI 307 (457)
T ss_pred HHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 209
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.92 E-value=74 Score=35.10 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=39.9
Q ss_pred HHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 226 MEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNM-------RKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (576)
Q Consensus 226 le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~-------~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~ 298 (576)
+|.+.+.......|.++..+|+.++..-.+..-.++. .....+.+|..++--|+.+..++-.++..+..-.++
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~ 409 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNI 409 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333334556666666666665544444334443 344445555555555555555555555555555444
Q ss_pred HHHhcCC
Q 008135 299 VKLQTIN 305 (576)
Q Consensus 299 l~~Q~~s 305 (576)
.++.-++
T Consensus 410 ~ddar~~ 416 (654)
T KOG4809|consen 410 EDDARMN 416 (654)
T ss_pred hHhhhcC
Confidence 4443333
No 210
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=83.81 E-value=90 Score=36.01 Aligned_cols=36 Identities=11% Similarity=0.280 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 394 LKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKI 430 (576)
Q Consensus 394 ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~i 430 (576)
.++.+..|..+|+..+....+ ...|++.++.+...+
T Consensus 647 ~k~KIe~L~~eIkkkIe~av~-ss~LK~k~E~Lk~Ev 682 (762)
T PLN03229 647 LQEKIESLNEEINKKIERVIR-SSDLKSKIELLKLEV 682 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHH
Confidence 355667888888887777765 344555555555444
No 211
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=83.81 E-value=50 Score=33.03 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=11.3
Q ss_pred HHHHhHHHHHHHHHHHHHHh
Q 008135 537 ISKMNKGISETALTVSEAYK 556 (576)
Q Consensus 537 i~~~~~~~~~~~~~i~~~f~ 556 (576)
+++-+....+.|..|.+.|.
T Consensus 140 l~~~dv~~~ek~r~vlea~~ 159 (251)
T PF11932_consen 140 LDDADVSLAEKFRRVLEAYQ 159 (251)
T ss_pred hhccCCCHHHHHHHHHHHHH
Confidence 33333446666777766665
No 212
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.69 E-value=57 Score=33.66 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008135 486 VEREAVEVLKASESKFQEAIRQC 508 (576)
Q Consensus 486 ~~~ea~~el~~~~~~~ee~~~e~ 508 (576)
+..+|+-++...+-+++.+.+++
T Consensus 277 ~qrdanrqisd~KfKl~KaEQei 299 (302)
T PF09738_consen 277 LQRDANRQISDYKFKLQKAEQEI 299 (302)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhh
Confidence 44678888888888887776543
No 213
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=83.22 E-value=69 Score=34.23 Aligned_cols=138 Identities=17% Similarity=0.214 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHH
Q 008135 413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLN------LLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMV 486 (576)
Q Consensus 413 ~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~------~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~ 486 (576)
.+.+...+..+.++...++..+.+-.....+.-.|+..++ ++++-.+.+..+ .|++.++..++..+.++..-
T Consensus 251 le~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r--kelE~lR~~L~kAEkele~n 328 (575)
T KOG4403|consen 251 LEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR--KELEQLRVALEKAEKELEAN 328 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHHHhc
Confidence 3445566666777777777666664444444334444433 333334444333 36666666666644222110
Q ss_pred H-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhHHHHHHHHHHH
Q 008135 487 E-REAVEVLKASESKFQE-AIRQCEEEIQIRALDLFALVDSVSKYKERMESK-----------ISKMNKGISETALTVS 552 (576)
Q Consensus 487 ~-~ea~~el~~~~~~~ee-~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~-----------i~~~~~~~~~~~~~i~ 552 (576)
- -.|=..|..|-+.-.+ -.+-++-+|+.+.++|..+.+.+++.|.+-.+. +++++-.++++-.++.
T Consensus 329 S~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~ 407 (575)
T KOG4403|consen 329 SSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALS 407 (575)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHH
Confidence 0 0122344444444333 333455677888888999988888887765443 4555555555444443
No 214
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=83.21 E-value=41 Score=31.65 Aligned_cols=30 Identities=13% Similarity=0.334 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 268 EKLVEEKEREIGKKVEEHKRICEENEEFKK 297 (576)
Q Consensus 268 e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~ 297 (576)
+..+..+..++.....+...+...+.+|+.
T Consensus 104 ~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 104 EEELAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444433
No 215
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=83.18 E-value=69 Score=34.20 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 420 QQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSK 456 (576)
Q Consensus 420 q~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~ 456 (576)
+.++..+...+...+.++..++.++..+..++.....
T Consensus 143 ~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~ 179 (423)
T TIGR01843 143 RAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISE 179 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444433
No 216
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=83.18 E-value=43 Score=32.10 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKET 458 (576)
Q Consensus 411 ~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~ 458 (576)
.+.++...++.++.+......+.+..+..|+.++.++..+...++...
T Consensus 107 ~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~k 154 (190)
T PF05266_consen 107 KLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKK 154 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666655556667777777777777766644444333
No 217
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=82.56 E-value=1.1e+02 Score=35.93 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008135 406 KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQL 451 (576)
Q Consensus 406 ~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql 451 (576)
..++....++...|.+-+..-+..+.-.+...+.--.++..++.|+
T Consensus 264 ~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 264 TERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666777777777777777777777777777777777777
No 218
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=82.23 E-value=50 Score=31.89 Aligned_cols=60 Identities=28% Similarity=0.406 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 394 LKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKE 457 (576)
Q Consensus 394 ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e 457 (576)
+|.+|...-.+++ .+..++..|..++.+.+..+...+..+..|...+..-..+++....+
T Consensus 15 LKqQLke~q~E~~----~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~E 74 (202)
T PF06818_consen 15 LKQQLKESQAEVN----QKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENE 74 (202)
T ss_pred HHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHH
Confidence 3444444433433 33344446666666666666666666666666555444444433333
No 219
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=82.10 E-value=1.3e+02 Score=36.73 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 236 REKLEKEKCVLEEDLNKFNAIIGELNMRK 264 (576)
Q Consensus 236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~~ 264 (576)
+..|+.+.....+++...+.-..+.+++.
T Consensus 104 ~~~Leq~l~~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 104 TDALEQEILQVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45555555555555555544444443333
No 220
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=82.07 E-value=30 Score=30.82 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 266 KMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (576)
Q Consensus 266 ~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL 295 (576)
++.++|..+...++....-.+.++.+..++
T Consensus 65 hLsqRId~vd~klDe~~ei~~~i~~eV~~v 94 (126)
T PF07889_consen 65 HLSQRIDRVDDKLDEQKEISKQIKDEVTEV 94 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333444444444433333333444444444
No 221
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.90 E-value=79 Score=34.92 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 418 SLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKE 457 (576)
Q Consensus 418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e 457 (576)
.++.++++.-..+.+.+.+.+.+.+....|...|++....
T Consensus 592 ~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~ 631 (741)
T KOG4460|consen 592 LLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEK 631 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444445555555555555555555555555443
No 222
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=81.73 E-value=74 Score=34.22 Aligned_cols=133 Identities=11% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 214 EYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELN--MRKEKMEKLVEEKEREIGKKVEEHKRICEE 291 (576)
Q Consensus 214 ~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~--~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e 291 (576)
++++.|..++.-|.++.+ +-......-+..+...+.+|+.+--... +-..=++.--..|..+.+.......+|+.=
T Consensus 155 ~el~~lrrdLavlRQ~~~--~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~ 232 (426)
T smart00806 155 AELKSLQRELAVLRQTHN--SFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDI 232 (426)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHH
Q 008135 292 NEEFKKRVKLQTI--NARDVERMRRELQAVERDIADAENARNEWE---SKTWDLDSKLGRKFKELEALSME 357 (576)
Q Consensus 292 ~~eL~~~l~~Q~~--s~~di~r~~~Er~~L~~~l~~~e~~~~~l~---~~~~~~e~~l~~~~e~le~l~~~ 357 (576)
++.|++-|...|+ ++..++.+.+++..+.++|.+++.-+.... +++|+.|+ +.+|++
T Consensus 233 vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL---------~~VcEE 294 (426)
T smart00806 233 IEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAEL---------DKVCEE 294 (426)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHH---------HHHHHH
No 223
>PF13166 AAA_13: AAA domain
Probab=81.57 E-value=1.1e+02 Score=35.44 Aligned_cols=60 Identities=22% Similarity=0.410 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHccC
Q 008135 308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSK---LGRKFKELEALSMECNQAMKRLKL 367 (576)
Q Consensus 308 di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~---l~~~~e~le~l~~~yn~~~~kl~l 367 (576)
++.....+...+...+..++..+..+.......+.. +...+......+..+|..+..+|.
T Consensus 411 ~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~g~ 473 (712)
T PF13166_consen 411 DIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRLGF 473 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 333344444444444444444444444443333333 333444567778888999988864
No 224
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=80.92 E-value=35 Score=29.31 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (576)
Q Consensus 238 ~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~ 298 (576)
.++.....|+.-++..+.-+..|......+...+..++.+.......+..|+.++.++...
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666666555555555555555555555443
No 225
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=80.91 E-value=28 Score=28.14 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 008135 200 GFIEKLEKEKENVSEYVEELKKKVSEMEG 228 (576)
Q Consensus 200 ~~~~kl~~~~~~~~~~~~~L~~~~~~le~ 228 (576)
++.++|+..+....+.+.-|+-++++|..
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKe 32 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKE 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777777777777653
No 226
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=80.39 E-value=58 Score=31.49 Aligned_cols=100 Identities=21% Similarity=0.274 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 254 NAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQT-INARDVERMRRELQAVERDIADAENARNE 332 (576)
Q Consensus 254 ~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~-~s~~di~r~~~Er~~L~~~l~~~e~~~~~ 332 (576)
+.-|..++.........+...+..-..........+.|+.+|-.+ .. -|+.|++|-. +. -+.=...+.....
T Consensus 38 K~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR---K~sWs~~DleRFT-~L---yr~dH~~e~~e~~ 110 (207)
T PF05546_consen 38 KKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR---KHSWSPADLERFT-EL---YRNDHENEQAEEE 110 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCChHHHHHHH-HH---HHhhhhhHHHHHH
Confidence 333333444444444444444444445555566666676666443 33 3899998843 22 1111222223333
Q ss_pred HHHhhhHHHHHHHHHHHHHHH-HHHHHHH
Q 008135 333 WESKTWDLDSKLGRKFKELEA-LSMECNQ 360 (576)
Q Consensus 333 l~~~~~~~e~~l~~~~e~le~-l~~~yn~ 360 (576)
+.....+.|.........|.. ++..||.
T Consensus 111 ak~~l~~aE~~~e~~~~~L~~~Il~RYHE 139 (207)
T PF05546_consen 111 AKEALEEAEEKVEEAFDDLMRAILTRYHE 139 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443 3455663
No 227
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=80.38 E-value=44 Score=30.09 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135 309 VERMRRELQAVERDIADAENARNEWESK 336 (576)
Q Consensus 309 i~r~~~Er~~L~~~l~~~e~~~~~l~~~ 336 (576)
++.+....+.++..++.+...+..+...
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l~~~ 35 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEELQAS 35 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444443333
No 228
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=80.17 E-value=1.5e+02 Score=36.22 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=15.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 427 AAKIEGKRKRIDALQFHINEMETQLNLLSKE 457 (576)
Q Consensus 427 ~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e 457 (576)
+.+.+....++..++..++.+...++..+.+
T Consensus 207 ~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~ 237 (1109)
T PRK10929 207 RLRSELAKKRSQQLDAYLQALRNQLNSQRQR 237 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555555554443
No 229
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=80.12 E-value=36 Score=28.95 Aligned_cols=76 Identities=14% Similarity=0.305 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 008135 269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ--TINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKL 344 (576)
Q Consensus 269 ~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q--~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l 344 (576)
..+.....++......+..+.....++...+... |+|+.++.....-+..|...+......+..++..+......+
T Consensus 5 ~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l 82 (123)
T PF02050_consen 5 QELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREEL 82 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555554444433 588888888887788888888777776666666554444433
No 230
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.95 E-value=44 Score=31.18 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=5.3
Q ss_pred HhcCCHHHH
Q 008135 301 LQTINARDV 309 (576)
Q Consensus 301 ~Q~~s~~di 309 (576)
+.+||+.||
T Consensus 14 NRPys~~di 22 (169)
T PF07106_consen 14 NRPYSAQDI 22 (169)
T ss_pred CCCCcHHHH
Confidence 346666666
No 231
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=79.49 E-value=73 Score=32.06 Aligned_cols=98 Identities=17% Similarity=0.297 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhh-------------
Q 008135 418 SLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLD------------- 484 (576)
Q Consensus 418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~------------- 484 (576)
.++...+.+...+.-++..+.-|+.++.....+++.+.+++ ..|..++++.........+.+.
T Consensus 78 ~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqel----kr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~ 153 (307)
T PF10481_consen 78 NLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQEL----KRCKSELERSQQAASSGDVSLNPCSTPQKSFATPL 153 (307)
T ss_pred HHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhccCCccccccCCchhhccCCC
Confidence 44444445555555556666666666665555555444332 2333344333332222111110
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 485 -MVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALV 523 (576)
Q Consensus 485 -~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~ 523 (576)
.........|..++.+|..-. ++++.|..++..|-
T Consensus 154 tp~q~~~~sk~e~L~ekynkev----eerkrle~e~k~lq 189 (307)
T PF10481_consen 154 TPSQYYSDSKYEELQEKYNKEV----EERKRLEAEVKALQ 189 (307)
T ss_pred ChhhhhhhhhHHHHHHHHHHHH----HHHhhHHHHHHHHh
Confidence 000123344555555555543 56777777776654
No 232
>PRK11281 hypothetical protein; Provisional
Probab=79.43 E-value=1.6e+02 Score=36.07 Aligned_cols=78 Identities=6% Similarity=0.022 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHH
Q 008135 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL-----QTINARDVERMRRELQAVE 320 (576)
Q Consensus 246 L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~-----Q~~s~~di~r~~~Er~~L~ 320 (576)
|++.+.....-..+.+.....+...+...+...+.....+.+......++.+++.+ -.++.+....++.|...++
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~ 205 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLN 205 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 33333334444444444444444555555554554455555555566666666654 2345555666666665555
Q ss_pred HHH
Q 008135 321 RDI 323 (576)
Q Consensus 321 ~~l 323 (576)
..+
T Consensus 206 ~~~ 208 (1113)
T PRK11281 206 AQN 208 (1113)
T ss_pred HHH
Confidence 443
No 233
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=79.38 E-value=43 Score=37.71 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=10.4
Q ss_pred HHHHcCCCCCCcChHhHHHHHHH
Q 008135 98 FLISQLDYPSTTKFEEDLFVVLK 120 (576)
Q Consensus 98 ~L~~~ld~~~~~k~eeev~~~lk 120 (576)
|++-++|+.+..-++.-+...+.
T Consensus 20 l~~~~~dp~~K~~ie~~~seatG 42 (555)
T TIGR03545 20 LLYFFFDPLAKKAIERSLEKAFG 42 (555)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHC
Confidence 33445565543333444444444
No 234
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=79.11 E-value=58 Score=30.72 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhHHHH
Q 008135 420 QQQSSEMAAKIEGKRKR 436 (576)
Q Consensus 420 q~~l~~l~~~ieek~~~ 436 (576)
++........+.+.+.+
T Consensus 50 e~~~~~~~a~~~eLr~e 66 (177)
T PF07798_consen 50 ENQEYLFKAAIAELRSE 66 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333344443333
No 235
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=78.96 E-value=73 Score=31.77 Aligned_cols=158 Identities=15% Similarity=0.244 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008135 394 LKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIE-----GKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEE 468 (576)
Q Consensus 394 ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ie-----ek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~E 468 (576)
|+..+..|...+...+....+....++..+++....+. ........++..++.|...+..+...+.++...+...
T Consensus 39 i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ 118 (247)
T PF06705_consen 39 IKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQD 118 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 469 AKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIR-----------QCEEEIQIRALDLFALVDSVSKYKERMESKI 537 (576)
Q Consensus 469 i~kl~eele~~~~~~~~~~~ea~~el~~~~~~~ee~~~-----------e~eeek~~l~~el~~l~~~i~k~K~~i~~~i 537 (576)
++.+-..+.. .+..+....+.+......+-..+.. .++.++..-...+..+...+...+......=
T Consensus 119 ie~~~~~l~~---~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~ 195 (247)
T PF06705_consen 119 IEELNQELVR---ELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGD 195 (247)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHhHHHHHHHHHHHHH
Q 008135 538 SKMNKGISETALTVSEA 554 (576)
Q Consensus 538 ~~~~~~~~~~~~~i~~~ 554 (576)
++....+++-+.+|-+.
T Consensus 196 e~f~~~v~~Ei~~lk~~ 212 (247)
T PF06705_consen 196 EQFQNFVLEEIAALKNA 212 (247)
T ss_pred HHHHHHHHHHHHHHHHH
No 236
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=78.93 E-value=1.3e+02 Score=34.49 Aligned_cols=51 Identities=14% Similarity=0.086 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 008135 316 LQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK 366 (576)
Q Consensus 316 r~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~ 366 (576)
+..++......+..+..+...+.-....+....-.++..+....++..++.
T Consensus 389 ~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~RlS 439 (739)
T PF07111_consen 389 RRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNRLS 439 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344555555555555555555555555555566666666666665555554
No 237
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=78.92 E-value=85 Score=32.54 Aligned_cols=40 Identities=25% Similarity=0.270 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEK 274 (576)
Q Consensus 235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l 274 (576)
....+..+...+.+++.|.......|+.-..+++.....+
T Consensus 51 k~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~l 90 (309)
T PF09728_consen 51 KQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKL 90 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555544444444444444443333333
No 238
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=78.89 E-value=93 Score=32.98 Aligned_cols=44 Identities=23% Similarity=0.443 Sum_probs=26.3
Q ss_pred HHHHHHHhcCC--------CC-cccccccc-cCCCCC-ChHHHHHHHHHHHHHHH
Q 008135 114 DLFVVLKSLSC--------PF-KINKSTLR-SPNSPH-NWPAYLALIHWLVQIAS 157 (576)
Q Consensus 114 ev~~~lk~l~y--------P~-~i~ks~l~-~~g~~h-~wp~~l~~L~WLv~l~~ 157 (576)
+++.=||-|+| .+ +|+|..++ .+..|. .+-.|.....||+.++-
T Consensus 3 ~l~dKLklL~Ye~~f~~~~~~kpl~r~yFa~~~~Np~eQF~~F~~L~~WL~~~~g 57 (359)
T PF10498_consen 3 DLLDKLKLLNYEKDFCKKRKMKPLSRHYFAVPSTNPGEQFYYFTSLCAWLISKAG 57 (359)
T ss_pred hHHHHHHhhhhHHHHhhhcCCCCCCHHHhcCCCCCchHHHHHHHHHHHHHHHhcC
Confidence 44455555555 12 67777776 322221 25577888899998664
No 239
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=78.88 E-value=1.4e+02 Score=35.14 Aligned_cols=38 Identities=8% Similarity=0.063 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008135 443 HINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEA 480 (576)
Q Consensus 443 kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~ 480 (576)
....+..+|+......+.+......|..++..++....
T Consensus 499 ~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~ 536 (913)
T KOG0244|consen 499 EKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFN 536 (913)
T ss_pred hhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhh
Confidence 44455555665555555555556666666666666554
No 240
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=78.77 E-value=1.7e+02 Score=35.99 Aligned_cols=43 Identities=30% Similarity=0.395 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHH
Q 008135 438 DALQFHINEMETQLNLLSKETQEIT-KRCAEEAKKMEEDIQTEA 480 (576)
Q Consensus 438 ~~Le~kl~~l~~ql~~lk~e~eee~-~~~~~Ei~kl~eele~~~ 480 (576)
..|..++..++.++..+..++-+.. ...+.+..+|.+..+.+.
T Consensus 1011 ~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~ 1054 (1294)
T KOG0962|consen 1011 RNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLS 1054 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444443333 234456666666666654
No 241
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=78.62 E-value=1.1e+02 Score=33.64 Aligned_cols=153 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 213 SEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEEN 292 (576)
Q Consensus 213 ~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~ 292 (576)
...+........++.........+.....+...+...+...+.....+.....+++..+...+...+.+...+++.+++.
T Consensus 32 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L 111 (475)
T PRK10361 32 AEQLAEREEMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRL 111 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 008135 293 EEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRL 365 (576)
Q Consensus 293 ~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl 365 (576)
..==+.++++-+....-.=...-+..|..-+.-+..++..+++++.+.+..-++..-.|...+.....+-.++
T Consensus 112 ~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i 184 (475)
T PRK10361 112 SEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQM 184 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 242
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=78.31 E-value=79 Score=31.80 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 008135 415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEME 448 (576)
Q Consensus 415 e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~ 448 (576)
+...++.+++.....+++.+.+|..|.+.+..|.
T Consensus 187 ~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 187 ENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444444444444443
No 243
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=77.97 E-value=1.9 Score=38.41 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008135 419 LQQQSSEMAAKIEGKRKRIDALQFHINEMETQL 451 (576)
Q Consensus 419 Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql 451 (576)
|..++..+...+.+...++..+......+...+
T Consensus 37 l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 37 LQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 333333343334443333333433333333333
No 244
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=77.77 E-value=45 Score=28.72 Aligned_cols=15 Identities=13% Similarity=0.100 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhc
Q 008135 543 GISETALTVSEAYKN 557 (576)
Q Consensus 543 ~~~~~~~~i~~~f~~ 557 (576)
.|+.+...|.+.+..
T Consensus 109 e~L~~~~~i~~rl~~ 123 (127)
T smart00502 109 ELLLSKKLIIERLQN 123 (127)
T ss_pred HHHHHHHHHHHHHHH
Confidence 477777777666544
No 245
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=77.49 E-value=36 Score=27.50 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 406 KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSK 456 (576)
Q Consensus 406 ~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~ 456 (576)
..++....+.+.-|+.+++++...-.....++..+......|..+.+.+++
T Consensus 10 E~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~ 60 (79)
T PRK15422 10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333444444444555555554444444444433333333334444444443
No 246
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=77.37 E-value=35 Score=33.15 Aligned_cols=53 Identities=32% Similarity=0.395 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (576)
Q Consensus 246 L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~ 298 (576)
+..|...++.-.+.++....++-..+.+++.++++.+..++.++.++..|...
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~ 185 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEM 185 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555556666666666666666666666555443
No 247
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=77.30 E-value=98 Score=32.37 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135 273 EKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESK 336 (576)
Q Consensus 273 ~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~ 336 (576)
..+.++...+.+++..+.+.++.+.-.+..-+|..++++........+..+..++.........
T Consensus 118 ~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~~~~~~~~~~ 181 (346)
T PRK10476 118 SANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALLQAQAAAAA 181 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666667777777777788899999988888877777776665555544443
No 248
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=77.20 E-value=35 Score=27.22 Aligned_cols=10 Identities=20% Similarity=0.268 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 008135 314 RELQAVERDI 323 (576)
Q Consensus 314 ~Er~~L~~~l 323 (576)
.++......|
T Consensus 53 ~e~~~~~~rl 62 (72)
T PF06005_consen 53 QERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 249
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=77.16 E-value=94 Score=32.11 Aligned_cols=59 Identities=14% Similarity=0.099 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 270 LVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAEN 328 (576)
Q Consensus 270 ~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~ 328 (576)
.+...+..++..+.++...+.+.++.+.-....-+|..+++.........+..++.+..
T Consensus 109 ~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~~~~~a~~~l~~~~~ 167 (334)
T TIGR00998 109 KVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHARKALLSAKAALNAAIQ 167 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555666667777766777777888887777666666655554433
No 250
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=77.01 E-value=45 Score=28.33 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 248 EDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKK 297 (576)
Q Consensus 248 ~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~ 297 (576)
.++.-+..|+..+...+......+..++.+++.....+.....+.+.+..
T Consensus 45 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~ 94 (123)
T PF02050_consen 45 AQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEK 94 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888999999999888888888888887777666666665555533
No 251
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=76.31 E-value=12 Score=37.68 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135 280 KKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESK 336 (576)
Q Consensus 280 ~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~ 336 (576)
.....++.++.+.++|...++.-+ +++|+-.+..++..++.+|+.++.++..|+++
T Consensus 136 D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLEKAK-TVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455666677777877777555 99999999888888888888776666555443
No 252
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=76.09 E-value=1.5e+02 Score=34.03 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSK 456 (576)
Q Consensus 413 ~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~ 456 (576)
..+...+..++.++.....-....+..|+.+.+.+......+..
T Consensus 502 ~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~ 545 (698)
T KOG0978|consen 502 REEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIK 545 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHH
Confidence 34445555555555555555555555555555544444443333
No 253
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=75.42 E-value=97 Score=31.36 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=6.0
Q ss_pred HHhHHHHHHHHHHHH
Q 008135 209 KENVSEYVEELKKKV 223 (576)
Q Consensus 209 ~~~~~~~~~~L~~~~ 223 (576)
+..+.+....|...+
T Consensus 29 l~~~~~~~~~l~~~i 43 (302)
T PF10186_consen 29 LQQLKEENEELRRRI 43 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 254
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=74.95 E-value=80 Score=30.19 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135 418 SLQQQSSEMAAKIEGKRKRIDALQFHIN 445 (576)
Q Consensus 418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~ 445 (576)
.++..++.+...++..+..+..|+.++.
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~ 93 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIE 93 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444
No 255
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=74.78 E-value=67 Score=29.24 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 490 AVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYK 530 (576)
Q Consensus 490 a~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K 530 (576)
.+.+|+.|...|.+.. .++..|...|..|+..-++.+
T Consensus 110 KEkEykealea~nEkn----keK~~Lv~~L~eLv~eSE~~r 146 (159)
T PF04949_consen 110 KEKEYKEALEAFNEKN----KEKAQLVTRLMELVSESERLR 146 (159)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777766 688889999988886665553
No 256
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=74.76 E-value=40 Score=31.23 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 008135 422 QSSEMAAKIEGKRKRIDALQF 442 (576)
Q Consensus 422 ~l~~l~~~ieek~~~l~~Le~ 442 (576)
+++.+...+.+....|..|+.
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333
No 257
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=74.60 E-value=96 Score=30.93 Aligned_cols=35 Identities=9% Similarity=0.146 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 492 EVLKASESKFQEAIRQCEEEIQIRALDLFALVDSV 526 (576)
Q Consensus 492 ~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i 526 (576)
..+...+..|+.....+++-+.....++....+..
T Consensus 167 ~~~~~a~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~ 201 (242)
T cd07671 167 DAATEAERVYKQNIEQLDKARTEWETEHILTCEVF 201 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555445555555555444444333
No 258
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=74.38 E-value=1.5e+02 Score=32.90 Aligned_cols=43 Identities=14% Similarity=0.333 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 492 EVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERME 534 (576)
Q Consensus 492 ~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~ 534 (576)
..+..++..++...+-|++....+...|..+.+.+.+-.+.|+
T Consensus 469 ~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~ 511 (518)
T PF10212_consen 469 QNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQ 511 (518)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555556666777777777777777766655544
No 259
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=73.83 E-value=86 Score=30.01 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=16.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 423 SSEMAAKIEGKRKRIDALQFHINEMETQLNLLSK 456 (576)
Q Consensus 423 l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~ 456 (576)
...+...+.+.+.++..|+.++..+...++.+.+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek 155 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEK 155 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555444444443
No 260
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=73.68 E-value=1.3e+02 Score=31.91 Aligned_cols=22 Identities=9% Similarity=0.145 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008135 437 IDALQFHINEMETQLNLLSKET 458 (576)
Q Consensus 437 l~~Le~kl~~l~~ql~~lk~e~ 458 (576)
.-++..+++..+.+++.+.+++
T Consensus 226 ~Qq~~q~i~qrd~~i~q~~q~i 247 (499)
T COG4372 226 AQQTAQAIQQRDAQISQKAQQI 247 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433
No 261
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=73.65 E-value=1.8e+02 Score=33.67 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=43.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhccCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 205 LEKEKENVSEYVEELKKKVSEMEGAMTGP------TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREI 278 (576)
Q Consensus 205 l~~~~~~~~~~~~~L~~~~~~le~l~~~~------~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~El 278 (576)
|+.+.+.+..+++.|.+.+.+-|.-.... -.+..|+.-+..|+..++.-..-++.++.+.+++-+.+...++|-
T Consensus 392 lrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~En 471 (861)
T PF15254_consen 392 LRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEEN 471 (861)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Confidence 44455555556666655554444321111 145567777777777777777777777777666666666555544
Q ss_pred HH
Q 008135 279 GK 280 (576)
Q Consensus 279 e~ 280 (576)
..
T Consensus 472 k~ 473 (861)
T PF15254_consen 472 KR 473 (861)
T ss_pred HH
Confidence 33
No 262
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=73.56 E-value=98 Score=30.55 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 492 EVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKY 529 (576)
Q Consensus 492 ~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~ 529 (576)
..+...+..|......++.-+.....++..+.+.....
T Consensus 164 ~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~l 201 (236)
T cd07651 164 SSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDL 201 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666665666655555444333
No 263
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=73.06 E-value=54 Score=27.33 Aligned_cols=49 Identities=14% Similarity=0.360 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 008135 307 RDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALS 355 (576)
Q Consensus 307 ~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~ 355 (576)
+++.+|+..+..|...|+..+.....|+....+....|...++.+..++
T Consensus 39 ~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 39 EEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVL 87 (89)
T ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888888888888888888887777777666666666666553
No 264
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=72.72 E-value=41 Score=27.65 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008135 289 CEENEEFKKRVKLQTINARDVERMRRE 315 (576)
Q Consensus 289 ~~e~~eL~~~l~~Q~~s~~di~r~~~E 315 (576)
+.|+.++-..|..-.+|++++-.+.+-
T Consensus 33 E~EN~EIv~~VR~~~mtp~eL~~~L~~ 59 (83)
T PF14193_consen 33 EAENLEIVQMVRSMKMTPEELAAFLRA 59 (83)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 457778888899999999988776544
No 265
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=72.67 E-value=89 Score=29.70 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=13.4
Q ss_pred hhhhhchHHHHHHHHHHHH
Q 008135 388 VDYKSTLKPALESFADDVK 406 (576)
Q Consensus 388 ~~~k~~ik~~L~~l~~ei~ 406 (576)
..+...++|.|..+..+|.
T Consensus 65 ~~w~d~~~P~ii~~~~~I~ 83 (184)
T PF05791_consen 65 KEWLDTIKPQIIDLNQDII 83 (184)
T ss_dssp HHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHhcHHHHHHHHHHH
Confidence 4455678888888877763
No 266
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=72.46 E-value=86 Score=29.45 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 008135 213 SEYVEELKKKVSEME 227 (576)
Q Consensus 213 ~~~~~~L~~~~~~le 227 (576)
...+..++..+...+
T Consensus 19 k~~l~k~~~ql~~ke 33 (177)
T PF13870_consen 19 KHQLAKLEEQLRQKE 33 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 267
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=72.37 E-value=1.6e+02 Score=32.42 Aligned_cols=51 Identities=20% Similarity=0.102 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (576)
Q Consensus 241 ~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~ 301 (576)
.+...+-+|+.|-..+.+ .++..++++|+.+..++...+.++..|..+|.+
T Consensus 194 ~keq~~y~~~~KelrdtN----------~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d 244 (596)
T KOG4360|consen 194 EKEQQLYGDCVKELRDTN----------TQARSGQEELQSKTKELSRQQEENSKLLSQLVD 244 (596)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556555444433 233344444444444455555555555544443
No 268
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=72.09 E-value=1.9e+02 Score=33.21 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 008135 264 KEKMEKLVEEKEREIG 279 (576)
Q Consensus 264 ~~~~e~~l~~l~~Ele 279 (576)
+.++...++++..||.
T Consensus 165 ~~kl~~~~qe~naeL~ 180 (916)
T KOG0249|consen 165 TRKLEEQLEELNAELQ 180 (916)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 269
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=72.03 E-value=1.2e+02 Score=30.86 Aligned_cols=83 Identities=11% Similarity=0.233 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008135 394 LKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKME 473 (576)
Q Consensus 394 ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~ 473 (576)
++|.|.+|-++|.+....+...-..|..++..+-....+....++.++.+...+..-...- .+...++-.++++++
T Consensus 246 ~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~r----T~~L~eVm~e~E~~K 321 (384)
T KOG0972|consen 246 VGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSR----TETLDEVMDEIEQLK 321 (384)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH----HHHHHHHHHHHHHHH
Confidence 5677777777777665555544445555555555555554444444444433322211111 111123344666666
Q ss_pred HHHHHHH
Q 008135 474 EDIQTEA 480 (576)
Q Consensus 474 eele~~~ 480 (576)
++|+..+
T Consensus 322 qemEe~G 328 (384)
T KOG0972|consen 322 QEMEEQG 328 (384)
T ss_pred HHHHHhc
Confidence 6666654
No 270
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=71.96 E-value=27 Score=30.19 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (576)
Q Consensus 256 ~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~ 301 (576)
.+..++..+..+-..+..++..+.....+-..|.-|+..|+.++..
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555443
No 271
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=71.81 E-value=1.2e+02 Score=30.74 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhccccccccc
Q 008135 544 ISETALTVSEAYKNSLPAQFSI 565 (576)
Q Consensus 544 ~~~~~~~i~~~f~~~~~~~~~~ 565 (576)
+.+++-..-+.|++++.-.-|+
T Consensus 186 l~e~ilkwRe~~ke~~~~~~~~ 207 (277)
T PF15003_consen 186 LAEQILKWREQQKEVSSYIPKM 207 (277)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 5666666666666666544444
No 272
>PRK14154 heat shock protein GrpE; Provisional
Probab=71.53 E-value=81 Score=30.70 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccccccccccc
Q 008135 511 EIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSIAFGEC 570 (576)
Q Consensus 511 ek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~ 570 (576)
....+...|..++|.++......... +.....|.+-+.-|...|..+|. ++|+..-+|
T Consensus 100 a~e~~~~~LLpVlDnLeRAL~~~~~~-~~~~~~l~eGvemi~k~l~~vL~-k~GVe~I~~ 157 (208)
T PRK14154 100 GSKQLITDLLPVADSLIHGLESPASE-DPQVKSMRDGMSLTLDLLHNTLA-KHGVQVINP 157 (208)
T ss_pred HHHHHHHHHhhHHhHHHHHHhccccc-chhHHHHHHHHHHHHHHHHHHHH-HCCCEEecC
Confidence 44556666666666666654322111 11123477777888888888884 677744333
No 273
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=71.39 E-value=1.5e+02 Score=31.91 Aligned_cols=17 Identities=24% Similarity=0.092 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008135 510 EEIQIRALDLFALVDSV 526 (576)
Q Consensus 510 eek~~l~~el~~l~~~i 526 (576)
+.+..+...|.+|...+
T Consensus 452 ~~~~~ln~~lerLq~~~ 468 (554)
T KOG4677|consen 452 EILHKLNAPLERLQEYV 468 (554)
T ss_pred HHHhhhhhhHHHHHHHh
Confidence 44444555444444443
No 274
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=71.32 E-value=28 Score=31.43 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 008135 267 MEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDV 309 (576)
Q Consensus 267 ~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di 309 (576)
+...+.+..++-+....+.++....+.++...+..-|+|++|+
T Consensus 33 l~~vv~er~~~~~~~~~~~~er~~~l~~i~~~~~~~Git~eeL 75 (134)
T PRK10328 33 FRVVTKERREEEEQQQRELAERQEKINTWLELMKADGINPEEL 75 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 3333344444444444555666677888889999999999888
No 275
>PRK04325 hypothetical protein; Provisional
Probab=71.17 E-value=32 Score=27.60 Aligned_cols=50 Identities=10% Similarity=0.162 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135 253 FNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ 302 (576)
Q Consensus 253 ~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q 302 (576)
+..-|..|+.++.-.+..|.+|.+.+-....++..++..+..|..++...
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555566666666666666555555555555555555555555443
No 276
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=71.04 E-value=38 Score=25.62 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 008135 282 VEEHKRICEENEEFKKRVKLQ 302 (576)
Q Consensus 282 ~~e~~~l~~e~~eL~~~l~~Q 302 (576)
..+....+.|-.+-..+|+++
T Consensus 30 r~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 30 RADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444454443
No 277
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=70.94 E-value=1.6e+02 Score=31.94 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008135 437 IDALQFHINEMETQLNLLSKETQ 459 (576)
Q Consensus 437 l~~Le~kl~~l~~ql~~lk~e~e 459 (576)
...|-.+++.|+.-++.++..+-
T Consensus 215 sd~Ll~kVdDLQD~VE~LRkDV~ 237 (424)
T PF03915_consen 215 SDRLLTKVDDLQDLVEDLRKDVV 237 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555443
No 278
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=70.90 E-value=1.5e+02 Score=31.72 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhHH-HHHHHHH
Q 008135 530 KERMESKISKMNKG-ISETALT 550 (576)
Q Consensus 530 K~~i~~~i~~~~~~-~~~~~~~ 550 (576)
-.-+...|+.|..+ ||++|..
T Consensus 451 ~~Slaaeid~~sqdeLmqafqe 472 (502)
T KOG0982|consen 451 FFSLAAEIDEMSQDELMQAFQE 472 (502)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 34455566666666 7777754
No 279
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=70.83 E-value=1.3e+02 Score=30.95 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVE 272 (576)
Q Consensus 239 l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~ 272 (576)
|+..+..+...+...+..|+.++.++..++..+.
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444443
No 280
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=70.64 E-value=1.2e+02 Score=30.33 Aligned_cols=86 Identities=21% Similarity=0.368 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008135 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQ 317 (576)
Q Consensus 238 ~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~ 317 (576)
.|+.+...++.+..+.+.-+...+..+..+..++...+.+-.........+..++.+|......+ ..+-..|-.++.
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~---~eEk~~Le~e~~ 85 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQ---EEEKEQLEQELR 85 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555554444444455555555555543332 233333444444
Q ss_pred HHHHHHHHH
Q 008135 318 AVERDIADA 326 (576)
Q Consensus 318 ~L~~~l~~~ 326 (576)
.+...+..+
T Consensus 86 e~~~~i~~l 94 (246)
T PF00769_consen 86 EAEAEIARL 94 (246)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 281
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=70.63 E-value=29 Score=31.38 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 008135 270 LVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDV 309 (576)
Q Consensus 270 ~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di 309 (576)
.+.+..++-+....+.+.-...++++...+..-|+|++|+
T Consensus 36 vv~er~ee~~~~~~~~~er~~kl~~~r~~m~~~Gis~~eL 75 (135)
T PRK10947 36 VVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNEL 75 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 3333334444444455556677888999999999999888
No 282
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=70.52 E-value=1.5e+02 Score=31.26 Aligned_cols=100 Identities=20% Similarity=0.251 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHH
Q 008135 419 LQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNL---DMVEREAVEVLK 495 (576)
Q Consensus 419 Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~---~~~~~ea~~el~ 495 (576)
++..+.+....+...+..+...+.++..++..+..+..+++.. ..+...++.+++....-+ ..+..-...+..
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~----~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~ 294 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEA----QKEKQELEEEIEETERKLERAEKLISGLSGEKE 294 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhccHHHHHhhhcchhh
Confidence 4455555555555555666666666665555555555554432 122222333333221111 111122234556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 496 ASESKFQEAIRQCEEEIQIRALDLFALVDSV 526 (576)
Q Consensus 496 ~~~~~~ee~~~e~eeek~~l~~el~~l~~~i 526 (576)
.|...++.+. +....+-++..-.-..|
T Consensus 295 RW~~~~~~l~----~~~~~l~GD~llaaa~i 321 (344)
T PF12777_consen 295 RWSEQIEELE----EQLKNLVGDSLLAAAFI 321 (344)
T ss_dssp CCHCHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH----HHhcccHHHHHHHHHHH
Confidence 6666666555 77777777765544444
No 283
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=70.46 E-value=26 Score=38.61 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKK 297 (576)
Q Consensus 239 l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~ 297 (576)
++.+...|++|+.++...++. +++.|...+.||.+.+.++++.+...++|..
T Consensus 98 le~krqel~seI~~~n~kiEe-------lk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIEE-------LKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHHH-------HHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 333445555555555444444 4444444444555555555555555555533
No 284
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=70.44 E-value=86 Score=28.59 Aligned_cols=41 Identities=17% Similarity=0.352 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Q 008135 286 KRICEENEEFKKRVKLQ--TINARDVERMRRELQAVERDIADA 326 (576)
Q Consensus 286 ~~l~~e~~eL~~~l~~Q--~~s~~di~r~~~Er~~L~~~l~~~ 326 (576)
+..+.+...+...+..+ .+|.++......+.......+...
T Consensus 53 ~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~ 95 (158)
T PF03938_consen 53 QAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQF 95 (158)
T ss_dssp HHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444 667777777777776666655543
No 285
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=70.42 E-value=53 Score=32.91 Aligned_cols=76 Identities=26% Similarity=0.408 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHH-----------------------------------------
Q 008135 216 VEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFN----------------------------------------- 254 (576)
Q Consensus 216 ~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~----------------------------------------- 254 (576)
++.|++++..+++ .+...++-+..|+.|+.+.+
T Consensus 1 l~~lq~~l~~l~~------~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~ 74 (248)
T PF08172_consen 1 LEELQKELSELEA------KLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGG 74 (248)
T ss_pred CHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCC
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 255 ----AIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKK 297 (576)
Q Consensus 255 ----~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~ 297 (576)
.++.-+.+.-.....+..+|++|+.....++..++.|++.|+.
T Consensus 75 ~~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 75 GGDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 286
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=70.41 E-value=1.9e+02 Score=32.51 Aligned_cols=32 Identities=19% Similarity=0.073 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 492 EVLKASESKFQEAIRQCEEEIQIRALDLFALV 523 (576)
Q Consensus 492 ~el~~~~~~~ee~~~e~eeek~~l~~el~~l~ 523 (576)
.+++.++.+|..+-..+...|++.+..|...+
T Consensus 349 ~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v 380 (557)
T COG0497 349 KEVKKLKAELLEAAEALSAIRKKAAKELEKEV 380 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555566666655555544
No 287
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=69.72 E-value=1.3e+02 Score=32.64 Aligned_cols=32 Identities=34% Similarity=0.390 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 008135 509 EEEIQIRALDLFALVDSV---SKYKERMESKISKM 540 (576)
Q Consensus 509 eeek~~l~~el~~l~~~i---~k~K~~i~~~i~~~ 540 (576)
+++|+..-.+|.-+..+= ..-|..|+..|.++
T Consensus 411 ee~r~~~~eelk~~e~s~~~~~~mk~rM~~~I~~L 445 (446)
T PF07227_consen 411 EEERKKKFEELKVLENSHRDYDNMKMRMQSEIQDL 445 (446)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHhh
Confidence 377777777766655322 34466677776653
No 288
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.52 E-value=2.1e+02 Score=32.78 Aligned_cols=66 Identities=21% Similarity=0.380 Sum_probs=32.9
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHH
Q 008135 392 STLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGK---------------RKRIDALQFHINEMETQLNLLSK 456 (576)
Q Consensus 392 ~~ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek---------------~~~l~~Le~kl~~l~~ql~~lk~ 456 (576)
..|.|.|..|.....++.. +...+..+++.+...+... -..+..++.++..|..++..-.+
T Consensus 106 ~~l~~~le~lr~qk~eR~~----ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rle 181 (660)
T KOG4302|consen 106 ESLKPYLEGLRKQKDERRA----EFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLE 181 (660)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566555555544433 3445666666665555544 13444455555555444444444
Q ss_pred HHHHH
Q 008135 457 ETQEI 461 (576)
Q Consensus 457 e~eee 461 (576)
++...
T Consensus 182 kv~~~ 186 (660)
T KOG4302|consen 182 KVLEL 186 (660)
T ss_pred HHHHH
Confidence 44333
No 289
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=69.35 E-value=1.3e+02 Score=30.13 Aligned_cols=53 Identities=25% Similarity=0.300 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (576)
Q Consensus 246 L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~ 298 (576)
|...+...+.--..|+.+..+++..+..|..+-.....+...|..++.++...
T Consensus 38 Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~ 90 (246)
T PF00769_consen 38 LEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAE 90 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444444444444455554444443
No 290
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=69.27 E-value=1.9e+02 Score=32.08 Aligned_cols=43 Identities=26% Similarity=0.314 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLS 455 (576)
Q Consensus 413 ~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk 455 (576)
..++..+...++++...++...--.+.|+..+..+..++....
T Consensus 353 e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~ 395 (570)
T COG4477 353 EKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIE 395 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555555555555555544444433
No 291
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=69.23 E-value=1.5e+02 Score=30.81 Aligned_cols=90 Identities=16% Similarity=0.204 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 008135 421 QQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESK 500 (576)
Q Consensus 421 ~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~~~~~~ 500 (576)
+-+.++...+++...+..+|+...++|..++-....- ..+...+...|+.-+. .+.++=...+.+
T Consensus 85 eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~v----f~k~k~~~q~LE~li~-----------~~~EEn~~lqlq 149 (401)
T PF06785_consen 85 EGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREV----FMKTKGDIQHLEGLIR-----------HLREENQCLQLQ 149 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHhcchHHHHHHHHH-----------HHHHHHHHHHHh
Confidence 3444555666677777777777777776666555431 1122223322222222 222344444555
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHH
Q 008135 501 FQEAIRQC---EEEIQIRALDLFALVDS 525 (576)
Q Consensus 501 ~ee~~~e~---eeek~~l~~el~~l~~~ 525 (576)
++++++++ +|+-++|.+|+.+.+.+
T Consensus 150 L~~l~~e~~Ekeeesq~LnrELaE~lay 177 (401)
T PF06785_consen 150 LDALQQECGEKEEESQTLNRELAEALAY 177 (401)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 55655544 34456666666666533
No 292
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=69.23 E-value=1.7e+02 Score=31.39 Aligned_cols=61 Identities=25% Similarity=0.352 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008135 416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDI 476 (576)
Q Consensus 416 ~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eel 476 (576)
+..|..+..+....+...+.....+...+...+.-++.+...+.+....+...+..|+..|
T Consensus 324 L~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri 384 (388)
T PF04912_consen 324 LKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERI 384 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555544444445555544444444444443333333333343333333
No 293
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=69.15 E-value=1.5e+02 Score=32.86 Aligned_cols=89 Identities=11% Similarity=0.194 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 008135 256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIA----DAENARN 331 (576)
Q Consensus 256 ~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~----~~e~~~~ 331 (576)
-|.+|-..+...+.+..-...|-++....+...+++++.+.. ++...+.....|++.+. ..+.++.
T Consensus 421 RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~e----------eL~~a~~~i~~LqDEL~TTr~NYE~QLs 490 (518)
T PF10212_consen 421 RIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEE----------ELKEANQNISRLQDELETTRRNYEEQLS 490 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344444444444444444444444444444444444333322 23333444444444443 3366777
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHH
Q 008135 332 EWESKTWDLDSKLGRKFKELEAL 354 (576)
Q Consensus 332 ~l~~~~~~~e~~l~~~~e~le~l 354 (576)
.+.+.+..++..++.+-++|+.+
T Consensus 491 ~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 491 MMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777665
No 294
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=69.13 E-value=39 Score=34.87 Aligned_cols=23 Identities=13% Similarity=0.400 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008135 308 DVERMRRELQAVERDIADAENAR 330 (576)
Q Consensus 308 di~r~~~Er~~L~~~l~~~e~~~ 330 (576)
+++++++..+.|...++.+..++
T Consensus 141 elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 141 ELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555454444444
No 295
>PRK09343 prefoldin subunit beta; Provisional
Probab=69.13 E-value=81 Score=27.80 Aligned_cols=30 Identities=17% Similarity=0.105 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008135 325 DAENARNEWESKTWDLDSKLGRKFKELEAL 354 (576)
Q Consensus 325 ~~e~~~~~l~~~~~~~e~~l~~~~e~le~l 354 (576)
.++..+..++++...++..+...-..+..+
T Consensus 82 ~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 82 LLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333333333343444444
No 296
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=69.04 E-value=85 Score=36.66 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 008135 175 MYMYASDSYLNY 186 (576)
Q Consensus 175 ~~~y~~~~Y~~f 186 (576)
+.+-+.+.|..+
T Consensus 245 ilN~la~~Yi~~ 256 (726)
T PRK09841 245 ILNSIANNYLQQ 256 (726)
T ss_pred HHHHHHHHHHHH
Confidence 444455555544
No 297
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=69.03 E-value=1.9e+02 Score=34.24 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=5.5
Q ss_pred HHHhhhCCCCC
Q 008135 69 NAHLSSHSFHI 79 (576)
Q Consensus 69 ~~fL~~~~~~~ 79 (576)
+.+|...|+++
T Consensus 350 ~~~maq~G~~v 360 (782)
T PRK00409 350 AALMAKSGLPI 360 (782)
T ss_pred HHHHHHhCCCc
Confidence 34455556543
No 298
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=68.94 E-value=1.4e+02 Score=30.54 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=35.2
Q ss_pred HhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 008135 464 RCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEA--IRQCEEEIQIRALDLFALVDSV 526 (576)
Q Consensus 464 ~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~~~~~~~ee~--~~e~eeek~~l~~el~~l~~~i 526 (576)
....|-..|++++.-.++...++ |...-.+|+-.-+.+ ..+--|+++-|+.+++.|-|.+
T Consensus 70 elneEkrtLeRELARaKV~aNRV---A~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKL 131 (351)
T PF07058_consen 70 ELNEEKRTLERELARAKVSANRV---ATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKL 131 (351)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhh---hhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666554443 222234555444442 2244567899999999998877
No 299
>PLN02678 seryl-tRNA synthetase
Probab=68.84 E-value=39 Score=36.94 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 277 EIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEW 333 (576)
Q Consensus 277 Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l 333 (576)
+......+++.++.++..+.++|..-..+.++.+.+..+...|...+..++..+..+
T Consensus 41 ~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~ 97 (448)
T PLN02678 41 EWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEA 97 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555555555555554422233445455555555555554444444333
No 300
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=68.71 E-value=63 Score=26.33 Aligned_cols=27 Identities=26% Similarity=0.181 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 494 LKASESKFQEAIRQCEEEIQIRALDLF 520 (576)
Q Consensus 494 l~~~~~~~ee~~~e~eeek~~l~~el~ 520 (576)
+-+++..+..++..++++...|..+|.
T Consensus 48 v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 48 VYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666677777777776664
No 301
>PRK04406 hypothetical protein; Provisional
Probab=68.38 E-value=51 Score=26.52 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 255 AIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (576)
Q Consensus 255 ~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~ 301 (576)
.-+..|+.++.-.+..|.+|.+.+-....++..++..+..|..++..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444454444444444444444444444444433
No 302
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=68.10 E-value=2.4e+02 Score=33.31 Aligned_cols=21 Identities=10% Similarity=-0.102 Sum_probs=14.2
Q ss_pred CCCCCChHHHHHHHHHHHHHh
Q 008135 52 ADLYTDRSHQSSAIRAINAHL 72 (576)
Q Consensus 52 ~rpl~dk~~q~~~~~~i~~fL 72 (576)
-.|..|.......+..+-+|.
T Consensus 34 l~P~~~~~~i~~~l~~~~e~~ 54 (771)
T TIGR01069 34 LKPPKSVEESKEIIIKLTALG 54 (771)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 567777776666666666664
No 303
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=68.05 E-value=1.6e+02 Score=31.63 Aligned_cols=14 Identities=14% Similarity=0.567 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 008135 248 EDLNKFNAIIGELN 261 (576)
Q Consensus 248 ~D~~K~~~~i~~l~ 261 (576)
.+++++++|++.++
T Consensus 157 ~e~~~Y~~~l~~Le 170 (447)
T KOG2751|consen 157 DEVDTYKACLQRLE 170 (447)
T ss_pred HHHHHHHHHHHHHh
Confidence 33344444443333
No 304
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=68.03 E-value=23 Score=27.64 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008135 275 EREIGKKVEEHKRICEENEEFKKRVKLQTI 304 (576)
Q Consensus 275 ~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~ 304 (576)
..|+.....++..++.++..+...+.+.+|
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F 32 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENF 32 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 445555566667777888888888888877
No 305
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=67.99 E-value=34 Score=26.94 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008135 409 SVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLL 454 (576)
Q Consensus 409 ~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~l 454 (576)
+.++...+.-+++.+++++..+.+...+|..|+.++..|..++..+
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444455555555555555555555555555444444443
No 306
>PRK04406 hypothetical protein; Provisional
Probab=67.86 E-value=53 Score=26.46 Aligned_cols=42 Identities=12% Similarity=0.054 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 008135 407 RSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEME 448 (576)
Q Consensus 407 ~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~ 448 (576)
.++..+...+.-+++.+++++..+.+...+|..|+.+++.|.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~ 52 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV 52 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555555554444444444444443
No 307
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=67.77 E-value=2.2e+02 Score=32.22 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008135 509 EEEIQIRALDLFALVDSV 526 (576)
Q Consensus 509 eeek~~l~~el~~l~~~i 526 (576)
+.+|..-...|..+...|
T Consensus 370 ~~Er~~~~~~l~~~~~~~ 387 (582)
T PF09731_consen 370 EQERNGRLAKLAELNSRL 387 (582)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 308
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=67.55 E-value=1.8e+02 Score=31.22 Aligned_cols=16 Identities=13% Similarity=-0.014 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 008135 507 QCEEEIQIRALDLFAL 522 (576)
Q Consensus 507 e~eeek~~l~~el~~l 522 (576)
++.|-...|+..+.++
T Consensus 302 di~E~~Es~qtRiskl 317 (395)
T PF10267_consen 302 DIWEVMESCQTRISKL 317 (395)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 309
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=67.50 E-value=1.1e+02 Score=28.78 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 434 RKRIDALQFHINEMETQLNLLSKETQEI 461 (576)
Q Consensus 434 ~~~l~~Le~kl~~l~~ql~~lk~e~eee 461 (576)
+++.+.+......+..+++.+++++.++
T Consensus 72 k~~~~~lr~~~e~L~~eie~l~~~L~~e 99 (177)
T PF07798_consen 72 KSEFAELRSENEKLQREIEKLRQELREE 99 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666666666555544
No 310
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=67.30 E-value=31 Score=39.40 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 008135 333 WESKTWDLDSKLGRKFKELEALSMECNQAMKRLKL 367 (576)
Q Consensus 333 l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~l 367 (576)
+...+..++.++....+.+..+......++.-|++
T Consensus 147 l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~ 181 (619)
T PF03999_consen 147 LRQHLQRLQEEKERRLEEVRELREEIISLMEELGI 181 (619)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33333344444444555555555555555555554
No 311
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.27 E-value=2.4e+02 Score=32.54 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008135 286 KRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354 (576)
Q Consensus 286 ~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l 354 (576)
..+...+++|++.++.-+-++.++.-.. ..++.++.....++.++.+.-.+.+.....++..
T Consensus 670 ~Sa~rqIael~~~lE~L~~t~~~~~~~~-------~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA 731 (1104)
T COG4913 670 PSAQRQIAELQARLERLTHTQSDIAIAK-------AALDAAQTRQKVLERQYQQEVTECAGLKKDLKRA 731 (1104)
T ss_pred hhHHHHHHHHHHHHHHhcCChhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777666666666664433 3334444444444444433333333333334433
No 312
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=67.26 E-value=52 Score=25.38 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKV 282 (576)
Q Consensus 246 L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~ 282 (576)
+...+.|++.-.-..+.+..+.+.+..++..++....
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455554444455555555555555544444333
No 313
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=67.18 E-value=2.6e+02 Score=32.97 Aligned_cols=21 Identities=14% Similarity=0.060 Sum_probs=14.8
Q ss_pred CCCCCChHHHHHHHHHHHHHh
Q 008135 52 ADLYTDRSHQSSAIRAINAHL 72 (576)
Q Consensus 52 ~rpl~dk~~q~~~~~~i~~fL 72 (576)
-.|+.|.......+..+-+|.
T Consensus 34 l~P~~~~~~i~~~l~~~~e~~ 54 (782)
T PRK00409 34 LDPETDFEEVEELLEETDEAA 54 (782)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 578888877777766666553
No 314
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=67.17 E-value=1.6e+02 Score=30.42 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008135 406 KRSSVEKLEELISLQQQSSEMA 427 (576)
Q Consensus 406 ~~~~~~~~~e~~~Lq~~l~~l~ 427 (576)
.+++..+.+++..|..+...+.
T Consensus 166 q~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 166 QEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444445544444443
No 315
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=67.16 E-value=1.1e+02 Score=28.59 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008135 416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEA 480 (576)
Q Consensus 416 ~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~ 480 (576)
+..|++++..+...+...+.+|..|..-+. -.+++++...+..+...+++.+..++
T Consensus 88 i~~l~ek~q~l~~t~s~veaEik~L~s~Lt---------~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 88 IVALTEKVQSLQQTCSYVEAEIKELSSALT---------TEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555666666666666666665544 12333333344444555556666654
No 316
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=67.08 E-value=35 Score=26.91 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (576)
Q Consensus 257 i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~ 301 (576)
+..|+.++.-.+..|.++...+-....++..++..+..|..++..
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444443
No 317
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=67.05 E-value=31 Score=27.40 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008135 273 EKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRREL 316 (576)
Q Consensus 273 ~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er 316 (576)
.+..++.....+++.++.++.+|+.+++.-.-+++-+++.-+++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~ 64 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREK 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33444455555556666777777777766644777777766543
No 318
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=67.05 E-value=1.8e+02 Score=31.05 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=9.3
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 008135 204 KLEKEKENVSEYVEELKK 221 (576)
Q Consensus 204 kl~~~~~~~~~~~~~L~~ 221 (576)
.|.+.+..+..+.+.|..
T Consensus 47 ~l~~rv~slsq~Nkvlk~ 64 (552)
T KOG2129|consen 47 SLGARVSSLSQRNKVLKG 64 (552)
T ss_pred HHHHHHHHHHhhhhhhhh
Confidence 445555555555554433
No 319
>PF14282 FlxA: FlxA-like protein
Probab=67.00 E-value=37 Score=29.21 Aligned_cols=51 Identities=24% Similarity=0.360 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 409 SVEKLEELISLQQQSSEMAA----KIEGKRKRIDALQFHINEMETQLNLLSKETQ 459 (576)
Q Consensus 409 ~~~~~~e~~~Lq~~l~~l~~----~ieek~~~l~~Le~kl~~l~~ql~~lk~e~e 459 (576)
+..+..++..|++++..+.. .-+.+...+..|+.+|..|.+++..+..+..
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566777777766 4467778888888888888888877765544
No 320
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=66.78 E-value=1.3e+02 Score=29.25 Aligned_cols=10 Identities=40% Similarity=0.611 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 008135 494 LKASESKFQE 503 (576)
Q Consensus 494 l~~~~~~~ee 503 (576)
+..++.++.+
T Consensus 121 l~~l~~kl~e 130 (221)
T PF04012_consen 121 LEELEAKLEE 130 (221)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 321
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=66.77 E-value=52 Score=35.88 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 008135 284 EHKRICEENEEFKK 297 (576)
Q Consensus 284 e~~~l~~e~~eL~~ 297 (576)
+.+.+..|+++|++
T Consensus 81 ~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 81 ENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 322
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=66.74 E-value=2.2e+02 Score=31.85 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135 262 MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ 302 (576)
Q Consensus 262 ~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q 302 (576)
.....++..+..+...+..+..++....+...+|+.++..|
T Consensus 414 ~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~q 454 (607)
T KOG0240|consen 414 EEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQ 454 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666555
No 323
>PF13514 AAA_27: AAA domain
Probab=66.50 E-value=3.2e+02 Score=33.69 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhc----CCHHHHHHHHHHHHHHH
Q 008135 266 KMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK----LQT----INARDVERMRRELQAVE 320 (576)
Q Consensus 266 ~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~----~Q~----~s~~di~r~~~Er~~L~ 320 (576)
.++..+..++.+++.....+..++....+.+.... ..| +++..+.........+.
T Consensus 677 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~ 739 (1111)
T PF13514_consen 677 QLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELR 739 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555544444433 333 45666655544444433
No 324
>PRK02793 phi X174 lysis protein; Provisional
Probab=66.48 E-value=54 Score=26.16 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008135 408 SSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQL 451 (576)
Q Consensus 408 ~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql 451 (576)
++.++...+.-+++.+++++..+.+....|..|+.++..|..++
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555555555544444333
No 325
>PRK14161 heat shock protein GrpE; Provisional
Probab=66.43 E-value=1.2e+02 Score=28.76 Aligned_cols=59 Identities=12% Similarity=0.055 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccccccccccc
Q 008135 511 EIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSIAFGEC 570 (576)
Q Consensus 511 ek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~ 570 (576)
....+..+|..++|.+++........-+.....+++-+.-|...|..+|. ++|+..=+|
T Consensus 67 a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~~Gv~mi~k~l~~vL~-~~Gv~~I~~ 125 (178)
T PRK14161 67 AIATFAKELLNVSDNLSRALAHKPANSDVEVTNIIAGVQMTKDELDKVFH-KHHIEEIKP 125 (178)
T ss_pred HHHHHHHHHhhHHhHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHH-HCCCEEecC
Confidence 45666677777777776664432211111113477777778888888884 778744333
No 326
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=66.43 E-value=79 Score=30.41 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccccccc
Q 008135 511 EIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSIA 566 (576)
Q Consensus 511 ek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~~~~ 566 (576)
..+++..++..++|.+++........ .+..+.++.-+.-+.+.|..+|.+ +|+.
T Consensus 84 a~e~~~~dlLpviDnlerAl~~~~~~-~d~~~~l~~Gvem~~~~l~~~L~k-~Gv~ 137 (193)
T COG0576 84 AIEKFAKDLLPVIDNLERALEAAEDD-KDPEKALLEGVEMTLDQLLDALEK-LGVE 137 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHHHHHHHHHHHH-CCCE
Confidence 45677778888888887775554444 222245888889999999999988 8883
No 327
>PRK04325 hypothetical protein; Provisional
Probab=66.37 E-value=54 Score=26.29 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008135 409 SVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQ 450 (576)
Q Consensus 409 ~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~q 450 (576)
+.++...+--+++.+++++..+.+...+|..|+.++..|..+
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~r 52 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQ 52 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555444444444444444333
No 328
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=66.21 E-value=1.8e+02 Score=30.75 Aligned_cols=31 Identities=6% Similarity=0.176 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135 448 ETQLNLLSKETQEITKRCAEEAKKMEEDIQT 478 (576)
Q Consensus 448 ~~ql~~lk~e~eee~~~~~~Ei~kl~eele~ 478 (576)
...|....-++.--..+..-+|..|++.+..
T Consensus 546 SdKYkDiYtELSiaKakadcdIsrLKEqLka 576 (593)
T KOG4807|consen 546 SDKYKDIYTELSIAKAKADCDISRLKEQLKA 576 (593)
T ss_pred ccchhHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence 3344444444443333333456666665544
No 329
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=65.76 E-value=1.3e+02 Score=29.06 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008135 501 FQEAIRQCEEEIQIRALDLFALV 523 (576)
Q Consensus 501 ~ee~~~e~eeek~~l~~el~~l~ 523 (576)
+..+..++..++.....+|..+.
T Consensus 151 l~~Ae~~I~~ek~~A~~el~~~a 173 (204)
T PRK09174 151 LKEAEARIAAIKAKAMADVGSIA 173 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555545544444
No 330
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=65.46 E-value=68 Score=25.51 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=31.5
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008135 392 STLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQL 451 (576)
Q Consensus 392 ~~ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql 451 (576)
..+-.+|..|-.++.++...-......|+...............++..|..++..|..++
T Consensus 6 ~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 6 KQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777776666655555555555555544444444444444444444444333
No 331
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.38 E-value=1.4e+02 Score=29.20 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (576)
Q Consensus 246 L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~ 300 (576)
.++.+.++.+++..-.......++.+...+.+++.....++.++.|...++..|.
T Consensus 70 tene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs 124 (246)
T KOG4657|consen 70 TENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIIS 124 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4455555555555555555556666666666666666555555555555544443
No 332
>PRK11519 tyrosine kinase; Provisional
Probab=64.99 E-value=1.9e+02 Score=33.81 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q 008135 175 MYMYASDSYLNY 186 (576)
Q Consensus 175 ~~~y~~~~Y~~f 186 (576)
+.+-+.+.|..+
T Consensus 245 iaN~l~~~Yi~~ 256 (719)
T PRK11519 245 ILNSITRNYLEQ 256 (719)
T ss_pred HHHHHHHHHHHH
Confidence 444455666555
No 333
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=64.89 E-value=1.3e+02 Score=28.62 Aligned_cols=115 Identities=19% Similarity=0.244 Sum_probs=60.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008135 393 TLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKM 472 (576)
Q Consensus 393 ~ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl 472 (576)
.+...|..|.++-. +.. +|.+-..-+...++.....+.+|...+..+...+..+..++......|..+-..+
T Consensus 61 dLe~~l~rLeEEqq-R~~-------~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~ 132 (182)
T PF15035_consen 61 DLEEALIRLEEEQQ-RSE-------ELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENF 132 (182)
T ss_pred cHHHHHHHHHHHHH-hHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666655533 223 3333444444555555666666777777777777777777777766666665444
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 473 EEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDL 519 (576)
Q Consensus 473 ~eele~~~~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el 519 (576)
..-+...-..|..+ =.++..++..+-+++-.++.....+..++
T Consensus 133 ~~y~~~eh~rll~L----Wr~v~~lRr~f~elr~~TerdL~~~r~e~ 175 (182)
T PF15035_consen 133 NQYLSSEHSRLLSL----WREVVALRRQFAELRTATERDLSDMRAEF 175 (182)
T ss_pred HhhhcccccHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44444332222221 12333445555555544444444443333
No 334
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=64.79 E-value=1.5e+02 Score=33.48 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008135 507 QCEEEIQIRALDLFALV 523 (576)
Q Consensus 507 e~eeek~~l~~el~~l~ 523 (576)
+++..+..+...+.++.
T Consensus 241 ~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 241 DLQNDKKQLKADLAELK 257 (555)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 33333333444443333
No 335
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=64.75 E-value=47 Score=28.88 Aligned_cols=45 Identities=16% Similarity=0.328 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (576)
Q Consensus 256 ~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~ 300 (576)
-+.+++..+..+-..+..++..+.....+-..|+-|+..|+.+++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666666665555666666666666666655
No 336
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=64.73 E-value=1.4e+02 Score=28.97 Aligned_cols=116 Identities=19% Similarity=0.318 Sum_probs=50.6
Q ss_pred HHHHHHHcCCCCCchhhhHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHhccCCCChHHHHHHHHHHHHH---HHHHH
Q 008135 181 DSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKV----SEMEGAMTGPTEREKLEKEKCVLEE---DLNKF 253 (576)
Q Consensus 181 ~~Y~~fl~g~d~~~~~l~~~~~~kl~~~~~~~~~~~~~L~~~~----~~le~l~~~~~~l~~l~~~~~~L~~---D~~K~ 253 (576)
..|-.||...+.........++..+......+..+.+.|...+ .+|+. .+-..++....++. ++..|
T Consensus 3 ~~~l~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~------qLlq~~k~~~~l~~eLq~l~~~ 76 (206)
T PF14988_consen 3 KEFLEYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQD------QLLQKEKEQAKLQQELQALKEF 76 (206)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhHHH
Confidence 4566677766644434444444444443333333333333222 22222 11112222222222 23344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 008135 254 NAIIGELNMRKEKMEKLVEEKEREIGKKVEEH-KRICEENEEFKKRVKLQ 302 (576)
Q Consensus 254 ~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~-~~l~~e~~eL~~~l~~Q 302 (576)
...-..++..+..++..+..+..+-.....+. .+.-.+...|.+++..+
T Consensus 77 ~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~ 126 (206)
T PF14988_consen 77 RRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASEL 126 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555554443322222 23345666666665443
No 337
>PRK00736 hypothetical protein; Provisional
Probab=64.48 E-value=62 Score=25.49 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (576)
Q Consensus 257 i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~ 301 (576)
+..|+.++.-.+..|.+|.+.+-....++..+...+..|..++..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555544444555555555555444444
No 338
>PRK02119 hypothetical protein; Provisional
Probab=64.25 E-value=64 Score=25.79 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008135 408 SSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEM 447 (576)
Q Consensus 408 ~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l 447 (576)
++..+...+.-.++.+++++..+.+...+|..|+.++..+
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444433
No 339
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=64.10 E-value=2.4e+02 Score=31.42 Aligned_cols=20 Identities=10% Similarity=0.368 Sum_probs=10.0
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 008135 207 KEKENVSEYVEELKKKVSEM 226 (576)
Q Consensus 207 ~~~~~~~~~~~~L~~~~~~l 226 (576)
-.+....+++..+...+.++
T Consensus 116 ~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 116 IRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554
No 340
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=64.05 E-value=87 Score=28.12 Aligned_cols=51 Identities=18% Similarity=0.332 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 247 EEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKK 297 (576)
Q Consensus 247 ~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~ 297 (576)
.+.+...++.+...+....+++..+.....|+.....++..+...+..|.+
T Consensus 79 ~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 79 AAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444444444444444444444444444444445454444443
No 341
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=63.96 E-value=14 Score=38.26 Aligned_cols=25 Identities=4% Similarity=0.064 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHH
Q 008135 317 QAVERDIADAENARNEWESKTWDLD 341 (576)
Q Consensus 317 ~~L~~~l~~~e~~~~~l~~~~~~~e 341 (576)
..|+..+..+...+.+|+..+...-
T Consensus 115 S~Lqs~v~~lsTdvsNLksdVSt~a 139 (326)
T PF04582_consen 115 SDLQSSVSALSTDVSNLKSDVSTQA 139 (326)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhhhhhhhc
Confidence 3334444444444444444443333
No 342
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.93 E-value=1.2e+02 Score=30.20 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=13.2
Q ss_pred CcceeEeeCCCCCCCcc
Q 008135 368 ATEIQYSLNSNGSTPSE 384 (576)
Q Consensus 368 ~~d~~~~ln~~~~~~~e 384 (576)
|..+.+.+++.+..|..
T Consensus 112 G~Gl~ITi~d~~~~~~~ 128 (247)
T COG3879 112 GPGLVITIDDPGYSPNG 128 (247)
T ss_pred CCcEEEEecCCCCCccc
Confidence 67788999887776665
No 343
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=63.67 E-value=1.2e+02 Score=27.61 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCHHHH
Q 008135 248 EDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL--QTINARDV 309 (576)
Q Consensus 248 ~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~--Q~~s~~di 309 (576)
.+++.+..-...+....-.++..+..++.++...-.+++.+..+-..+..+... +++|+..+
T Consensus 34 ~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l 97 (150)
T PF07200_consen 34 QEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDAL 97 (150)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH
Confidence 333333344444444444444555555555555555555555555555444443 44554444
No 344
>PLN02939 transferase, transferring glycosyl groups
Probab=63.47 E-value=3.3e+02 Score=32.81 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 235 EREKLEKEKCVLEEDLNKFNAIIGE 259 (576)
Q Consensus 235 ~l~~l~~~~~~L~~D~~K~~~~i~~ 259 (576)
.+..|++++..|++|++-++.-+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (977)
T PLN02939 227 ELDVLKEENMLLKDDIQFLKAELIE 251 (977)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5667888888888888887765544
No 345
>PRK14143 heat shock protein GrpE; Provisional
Probab=63.24 E-value=1.4e+02 Score=29.73 Aligned_cols=54 Identities=6% Similarity=0.172 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccccccc
Q 008135 511 EIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSIA 566 (576)
Q Consensus 511 ek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~~~~ 566 (576)
....+..+|..++|.+++....+...-.. ...|..-+.-|...|..+| +++||.
T Consensus 115 a~~~~~~~lLpV~DnLerAl~~~~~~~~~-~~~l~~Gve~i~k~l~~~L-~k~GV~ 168 (238)
T PRK14143 115 LKCNTLSEILPVVDNFERARQQLKPEGEE-AQALHRSYQGLYKQLVDVL-KRLGVS 168 (238)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcccccchh-HHHHHHHHHHHHHHHHHHH-HHCCCe
Confidence 44556666667776666654432211110 1236667777778888888 477873
No 346
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=63.20 E-value=99 Score=26.64 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 008135 495 KASESKFQEAIRQCEE 510 (576)
Q Consensus 495 ~~~~~~~ee~~~e~ee 510 (576)
..++.++.++.+.++.
T Consensus 61 ~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 61 AELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444433333
No 347
>PRK14150 heat shock protein GrpE; Provisional
Probab=63.17 E-value=1.5e+02 Score=28.58 Aligned_cols=54 Identities=11% Similarity=0.251 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccccccc
Q 008135 511 EIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSIA 566 (576)
Q Consensus 511 ek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~~~~ 566 (576)
....+...|..++|.+.......... ......+++-+.-|...|..+|. ++|+.
T Consensus 86 a~~~~~~~lL~v~DnlerAl~~~~~~-~~~~~~~~~Gv~mi~~~l~~~L~-~~Gv~ 139 (193)
T PRK14150 86 ALEKFANELLPVIDNLERALQAADKE-NEALKALIEGVELTLKSLLDTVA-KFGVE 139 (193)
T ss_pred HHHHHHHHHHhHHhHHHHHHhccccc-chhHHHHHHHHHHHHHHHHHHHH-HCCCe
Confidence 34566667777777666654322110 11123477888888888888887 67873
No 348
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=63.15 E-value=2.4e+02 Score=31.13 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 510 EEIQIRALDLFALVDSVSKYKERMESKI 537 (576)
Q Consensus 510 eek~~l~~el~~l~~~i~k~K~~i~~~i 537 (576)
+....+-.+|..+-+....+|..+..+|
T Consensus 419 eKVd~LpqqI~~vs~Kc~~~Ksd~d~kI 446 (531)
T PF15450_consen 419 EKVDSLPQQIEEVSDKCDLHKSDSDTKI 446 (531)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 3333333333333333333333333333
No 349
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=63.07 E-value=84 Score=32.80 Aligned_cols=54 Identities=13% Similarity=0.189 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 242 EKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (576)
Q Consensus 242 ~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL 295 (576)
+...|+.|.+++++-......+.+++.+-.......+......++.+...++.+
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444444444444333344444333333
No 350
>PRK14145 heat shock protein GrpE; Provisional
Probab=63.01 E-value=1.3e+02 Score=29.06 Aligned_cols=49 Identities=14% Similarity=0.263 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccc
Q 008135 511 EIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSI 565 (576)
Q Consensus 511 ek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~~~ 565 (576)
....+...|..++|.++...... .+ ...|.+-+.-|.+.|..+|. ++||
T Consensus 93 a~e~~~~~LLpV~DnLerAl~~~----~~-~~~l~~Gv~mi~k~l~~vL~-k~GV 141 (196)
T PRK14145 93 GKEQVILELLPVMDNFERALASS----GD-YNSLKEGIELIYRQFKKILD-KFGV 141 (196)
T ss_pred HHHHHHHHHHhHHhHHHHHHhcc----cc-HHHHHHHHHHHHHHHHHHHH-HCCC
Confidence 45666677777777776664431 11 13377788888888888885 5688
No 351
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=62.75 E-value=1.5e+02 Score=28.57 Aligned_cols=24 Identities=13% Similarity=0.336 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 487 EREAVEVLKASESKFQEAIRQCEE 510 (576)
Q Consensus 487 ~~ea~~el~~~~~~~ee~~~e~ee 510 (576)
.......|.+++.+|..+......
T Consensus 114 R~~S~~kL~~tr~~Y~~L~~aM~~ 137 (201)
T PF11172_consen 114 RRASEQKLAETRRRYAQLIKAMRR 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557888888888887744433
No 352
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.72 E-value=74 Score=25.03 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLS 455 (576)
Q Consensus 414 ~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk 455 (576)
+.+.-|+-+++++...-.....+...++.....|..+-++++
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk 59 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLK 59 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433333333333333333333333333
No 353
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=62.70 E-value=1.7e+02 Score=29.15 Aligned_cols=79 Identities=11% Similarity=0.124 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 283 EEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAM 362 (576)
Q Consensus 283 ~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~ 362 (576)
...+.+...+.-+...|-.-.++++.|.-++.=++.|...+..++..+...++....++. .=.+++.++.+|..+.
T Consensus 147 ~kceam~lKLr~~~~~iL~~TYTpe~v~Al~~Ir~~L~~~~~~~e~~~~~a~~~L~~Ye~----lg~~F~~ivreY~~l~ 222 (238)
T PF14735_consen 147 AKCEAMILKLRVLELEILSDTYTPETVPALRKIRDHLEEAIEELEQELQKARQRLESYEG----LGPEFEEIVREYTDLQ 222 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccHhHHHHHHHHHHHH
Confidence 334556666667777777789999999999999999999999999998888888766664 4456788888898887
Q ss_pred HHc
Q 008135 363 KRL 365 (576)
Q Consensus 363 ~kl 365 (576)
..|
T Consensus 223 ~~i 225 (238)
T PF14735_consen 223 QEI 225 (238)
T ss_pred HHH
Confidence 665
No 354
>PRK00295 hypothetical protein; Provisional
Probab=62.36 E-value=72 Score=25.11 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008135 411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQ 450 (576)
Q Consensus 411 ~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~q 450 (576)
++...+.-+++.+++++..+.....+|..|+.++..+..+
T Consensus 9 ~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~r 48 (68)
T PRK00295 9 ELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKR 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555555555444444444444444333
No 355
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=62.18 E-value=67 Score=24.33 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 008135 344 LGRKFKELEALSMEC 358 (576)
Q Consensus 344 l~~~~e~le~l~~~y 358 (576)
.++.-+.|......|
T Consensus 40 AaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 40 AARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHhhc
Confidence 334444444444433
No 356
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.18 E-value=2.3e+02 Score=30.50 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=29.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 207 KEKENVSEYVEELKKKVSEMEG-AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELN 261 (576)
Q Consensus 207 ~~~~~~~~~~~~L~~~~~~le~-l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~ 261 (576)
..-..+..++.-|+.++.+|+. .....++--.++.+..+|...+.-+...+...+
T Consensus 215 e~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqE 270 (502)
T KOG0982|consen 215 EERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQE 270 (502)
T ss_pred chhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334456667777777777775 111223344455566666655555544444433
No 357
>PRK14163 heat shock protein GrpE; Provisional
Probab=62.17 E-value=1.5e+02 Score=29.08 Aligned_cols=46 Identities=13% Similarity=0.289 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccccccc
Q 008135 511 EIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSIA 566 (576)
Q Consensus 511 ek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~~~~ 566 (576)
....+...|..++|.+++.... ..+.+-+.-|.+.|..+|. ++|+.
T Consensus 88 a~~~~~~~LLpVlDnLerAl~~---------~~l~~Gv~mi~k~l~~~L~-k~Gv~ 133 (214)
T PRK14163 88 AVANLLSELLPVLDDVGRAREH---------GELVGGFKSVAESLETTVA-KLGLQ 133 (214)
T ss_pred HHHHHHHHHhhhHhHHHHHHhc---------hhHHHHHHHHHHHHHHHHH-HCCCE
Confidence 4456667777777777666443 1367777788888888887 67773
No 358
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=62.04 E-value=3.2e+02 Score=32.24 Aligned_cols=7 Identities=0% Similarity=0.017 Sum_probs=3.7
Q ss_pred hhhCCCC
Q 008135 72 LSSHSFH 78 (576)
Q Consensus 72 L~~~~~~ 78 (576)
+...|++
T Consensus 348 ~aq~G~~ 354 (771)
T TIGR01069 348 MFQSGIP 354 (771)
T ss_pred HHHhCCC
Confidence 4456654
No 359
>PRK14140 heat shock protein GrpE; Provisional
Probab=61.96 E-value=1.5e+02 Score=28.41 Aligned_cols=53 Identities=15% Similarity=0.143 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccccccc
Q 008135 511 EIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSIA 566 (576)
Q Consensus 511 ek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~~~~ 566 (576)
....+...+..++|.++........ ...-..+.+-+.-|.+.|..+|. ++|+.
T Consensus 85 a~~~~~~~LLpvlDnLerAl~~~~~--~~~~~~i~~Gv~mi~k~l~~~L~-k~GV~ 137 (191)
T PRK14140 85 RAQSLASDLLPALDNFERALQIEAD--DEQTKSLLKGVEMVHRQLLEALK-KEGVE 137 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCc--cchHHHHHHHHHHHHHHHHHHHH-HCCCE
Confidence 4456666777777777665442111 01113367777778888888887 77773
No 360
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=61.88 E-value=1.2e+02 Score=27.00 Aligned_cols=79 Identities=9% Similarity=0.159 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008135 261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV---KLQTINARDVERMRRELQAVERDIADAENARNEWESKT 337 (576)
Q Consensus 261 ~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l---~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~ 337 (576)
..........+.....++......+..+.....+....+ ..+|+|+.++.....=+..|...|......+..++..+
T Consensus 12 ~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~ 91 (141)
T TIGR02473 12 EKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRFIRQLDQRIQQQQQELALLQQEV 91 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555666666666666666666666554 35678888886666666666666665555555554443
Q ss_pred hH
Q 008135 338 WD 339 (576)
Q Consensus 338 ~~ 339 (576)
..
T Consensus 92 e~ 93 (141)
T TIGR02473 92 EA 93 (141)
T ss_pred HH
Confidence 33
No 361
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=61.83 E-value=76 Score=24.84 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 417 ISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQ 459 (576)
Q Consensus 417 ~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~e 459 (576)
..|..+++.+-...+..+.++..|..+...+.++-..+.+..+
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666555555555554444443
No 362
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=61.80 E-value=1.5e+02 Score=28.12 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=22.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008135 426 MAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKME 473 (576)
Q Consensus 426 l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~ 473 (576)
+...+.+.+......+..+.+.+.++...+.+..+-......+++...
T Consensus 60 I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~ 107 (184)
T CHL00019 60 ILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREK 107 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444555555555555554444444443333
No 363
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=61.35 E-value=1.3e+02 Score=27.54 Aligned_cols=85 Identities=9% Similarity=0.105 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL---QTINARDVERMRRELQAVERDIADAENARNEWE 334 (576)
Q Consensus 258 ~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~---Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~ 334 (576)
+--.....+....++.+..+.+.....+..|.....++...+.. -|+|+......+.=+..|...|+.....+..+.
T Consensus 12 dl~~k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~~nyq~fI~~Le~~I~q~~~~~~~~~ 91 (148)
T COG2882 12 DLAKKEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSAAQWQNYQQFISQLEVAIDQQQSQLSKLR 91 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556666777777777777777888888888888877555 477777775666666777777776666666555
Q ss_pred HhhhHHHH
Q 008135 335 SKTWDLDS 342 (576)
Q Consensus 335 ~~~~~~e~ 342 (576)
..+.+...
T Consensus 92 ~~ve~~r~ 99 (148)
T COG2882 92 KQVEQKRE 99 (148)
T ss_pred HHHHHHHH
Confidence 55444433
No 364
>PRK02793 phi X174 lysis protein; Provisional
Probab=61.21 E-value=71 Score=25.44 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (576)
Q Consensus 257 i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~ 301 (576)
+..|+.++.-.+..|.+|.+.+-....++..++.....|..++..
T Consensus 10 i~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 10 LAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444444444444433
No 365
>PRK11546 zraP zinc resistance protein; Provisional
Probab=61.19 E-value=72 Score=29.07 Aligned_cols=37 Identities=5% Similarity=0.285 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 008135 290 EENEEFKKRVKLQTINARDVERMRRELQAVERDIADA 326 (576)
Q Consensus 290 ~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~ 326 (576)
....+|+..+....-..+.|..+.+|+..|+..+.+.
T Consensus 72 aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 72 SKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666777777777776666533
No 366
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=60.97 E-value=12 Score=38.80 Aligned_cols=46 Identities=7% Similarity=0.181 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 234 TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIG 279 (576)
Q Consensus 234 ~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele 279 (576)
+.+..+.++..+|+.-+..+..-+..+..++..++..|..+...+.
T Consensus 28 GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~ 73 (326)
T PF04582_consen 28 GDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLA 73 (326)
T ss_dssp ----------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444443333
No 367
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=60.91 E-value=82 Score=24.93 Aligned_cols=43 Identities=16% Similarity=0.130 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSK 456 (576)
Q Consensus 414 ~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~ 456 (576)
.++..|+..++.+.+.++--...+..|....+....++..+..
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~ 47 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYE 47 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666655555555444443
No 368
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=60.84 E-value=85 Score=29.92 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 406 KRSSVEKLEELISLQQQSSEMAAKI 430 (576)
Q Consensus 406 ~~~~~~~~~e~~~Lq~~l~~l~~~i 430 (576)
-.++..+..++..+++.+.......
T Consensus 117 I~r~~~li~~l~~~~~~~~~~~kq~ 141 (192)
T PF05529_consen 117 IRRVHSLIKELIKLEEKLEALKKQA 141 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555444433
No 369
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=60.68 E-value=1.3e+02 Score=27.06 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 008135 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARD 308 (576)
Q Consensus 246 L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~d 308 (576)
-..+.+.|.......+..+......+..++.+|...+..++. ..+-+.|...|..++.|-++
T Consensus 72 n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~-k~eyd~La~~I~~~p~sR~e 133 (139)
T PF05615_consen 72 NKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQN-KEEYDALAKKINSQPTSREE 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCHHH
Confidence 344566666666666667777777777777777654433332 33666777777666654433
No 370
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=60.64 E-value=50 Score=35.87 Aligned_cols=23 Identities=4% Similarity=0.059 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhcccccccccc
Q 008135 543 GISETALTVSEAYKNSLPAQFSIA 566 (576)
Q Consensus 543 ~~~~~~~~i~~~f~~~~~~~~~~~ 566 (576)
...+.+..+.+.|.++| +.||++
T Consensus 293 ~s~~~~~~~l~~~~~i~-~~Lglp 315 (425)
T PRK05431 293 DSYAELEELTANAEEIL-QKLELP 315 (425)
T ss_pred HHHHHHHHHHHHHHHHH-HHcCCc
Confidence 46667777777777777 567774
No 371
>PRK02119 hypothetical protein; Provisional
Probab=60.63 E-value=86 Score=25.07 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 259 ELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (576)
Q Consensus 259 ~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l 299 (576)
.|+.++.-.+..|.+|.+.+-....++..++..+..|..++
T Consensus 13 ~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 13 ELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444333333334444444444444333
No 372
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=60.62 E-value=1.3e+02 Score=27.17 Aligned_cols=92 Identities=12% Similarity=0.129 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 008135 265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK---LQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLD 341 (576)
Q Consensus 265 ~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~---~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e 341 (576)
......+......+......+..|.....+....+. .+|+++.+....+.=+..|...|......+..++..+...-
T Consensus 19 e~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r 98 (146)
T PRK07720 19 EKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQ 98 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555666666666666666666666653 47899999877777778888888766666655555443332
Q ss_pred HH---HHHHHHHHHHHHH
Q 008135 342 SK---LGRKFKELEALSM 356 (576)
Q Consensus 342 ~~---l~~~~e~le~l~~ 356 (576)
.. -......++++..
T Consensus 99 ~~~~ea~~~~k~~ekLke 116 (146)
T PRK07720 99 QDLTEKNIEVKKYEKMKE 116 (146)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 22 2333344555543
No 373
>PRK00295 hypothetical protein; Provisional
Probab=60.58 E-value=73 Score=25.07 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (576)
Q Consensus 257 i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~ 300 (576)
+..|+.++.-.+..|.+|.+.+-....++..++..+..|..++.
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444433
No 374
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=60.39 E-value=52 Score=25.27 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 251 NKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRI 288 (576)
Q Consensus 251 ~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l 288 (576)
.+-..++..|+.+...++.....|..++.....++..|
T Consensus 22 ~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 22 QRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554444433333333
No 375
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.04 E-value=83 Score=24.75 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=9.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 008135 203 EKLEKEKENVSEYVEELKKKV 223 (576)
Q Consensus 203 ~kl~~~~~~~~~~~~~L~~~~ 223 (576)
++|+..+......+.-|+-++
T Consensus 7 ekLE~KiqqAvdTI~LLQmEi 27 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEI 27 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333
No 376
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=59.99 E-value=1.5e+02 Score=27.61 Aligned_cols=120 Identities=19% Similarity=0.272 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008135 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGK-KVEEHKRICEENEEFKKRVKLQTINARDVERMRR 314 (576)
Q Consensus 236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~-~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~ 314 (576)
.+.++.++..+...+.....-++.++..-.....+|.+....... .+.+++..-.+-.+++..+..- -+.-..+..
T Consensus 29 ~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~---re~E~qLr~ 105 (159)
T PF05384_consen 29 YERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAML---REREKQLRE 105 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 344555666666666666777777777776777777776666543 3455555555555555544332 233445666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008135 315 ELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMEC 358 (576)
Q Consensus 315 Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~y 358 (576)
.|+.|++.+..+...+...+.-++...+.+.=....+..+...+
T Consensus 106 rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~ 149 (159)
T PF05384_consen 106 RRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQI 149 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 67777777777777766666666666655444444444444333
No 377
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=59.64 E-value=1.4e+02 Score=27.35 Aligned_cols=11 Identities=36% Similarity=0.428 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 008135 448 ETQLNLLSKET 458 (576)
Q Consensus 448 ~~ql~~lk~e~ 458 (576)
+.++...+.+.
T Consensus 80 e~~L~~A~~ea 90 (156)
T CHL00118 80 EQELSKARKEA 90 (156)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 378
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=59.64 E-value=3.6e+02 Score=31.89 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008135 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEM 447 (576)
Q Consensus 414 ~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l 447 (576)
.++..+++.++.+.+.+++...+++.+..++..|
T Consensus 774 ~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~l 807 (984)
T COG4717 774 EELALLEEAIDALDEEVEELHAQVAALSRQIAQL 807 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777777777666666666666643
No 379
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=59.62 E-value=1.3e+02 Score=26.86 Aligned_cols=11 Identities=36% Similarity=0.341 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 008135 447 METQLNLLSKE 457 (576)
Q Consensus 447 l~~ql~~lk~e 457 (576)
.+.++...+.+
T Consensus 62 ~e~~L~~a~~e 72 (140)
T PRK07353 62 YEQQLASARKQ 72 (140)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 380
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=59.57 E-value=1.3e+02 Score=26.83 Aligned_cols=30 Identities=3% Similarity=0.256 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 500 KFQEAIRQCEEEIQIRALDLFALVDSVSKY 529 (576)
Q Consensus 500 ~~ee~~~e~eeek~~l~~el~~l~~~i~k~ 529 (576)
.|..+...+..-+..|..++.+....|..|
T Consensus 90 eYk~llk~y~~~~~~L~k~I~~~e~iI~~f 119 (126)
T PF09403_consen 90 EYKELLKKYKDLLNKLDKEIAEQEQIIDNF 119 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555554444444444
No 381
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=59.41 E-value=85 Score=28.75 Aligned_cols=76 Identities=13% Similarity=0.174 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135 400 SFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQT 478 (576)
Q Consensus 400 ~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~ 478 (576)
.+.+++...+...........+.+......+++.+.+++.|......+...++-.+.++.++... .++.+++++.+
T Consensus 51 er~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~---~veel~eqV~e 126 (157)
T COG3352 51 ERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRG---IVEELEEQVNE 126 (157)
T ss_pred HHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHH---HHHHHHHHHHH
Confidence 34444444333333344445555555566666666666666666666666666666655554332 33334444444
No 382
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=59.40 E-value=80 Score=24.36 Aligned_cols=42 Identities=21% Similarity=0.359 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008135 413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLL 454 (576)
Q Consensus 413 ~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~l 454 (576)
.+++.+.+...-.....+.+.+.++..|..++..|..+++.+
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444555555555555555555444444443
No 383
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=59.20 E-value=98 Score=33.54 Aligned_cols=56 Identities=18% Similarity=0.347 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 008135 276 REIGKKVEEHKRICEENEEFKKRVKLQTINARD-VERMRRELQAVERDIADAENARN 331 (576)
Q Consensus 276 ~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~d-i~r~~~Er~~L~~~l~~~e~~~~ 331 (576)
++......+++.++.++..+.+.|....-..++ .+.+..+...+...+..++.+..
T Consensus 37 ~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 93 (418)
T TIGR00414 37 DERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALK 93 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555555555555442111123 44444444444444444444433
No 384
>PRK14153 heat shock protein GrpE; Provisional
Probab=58.88 E-value=1.7e+02 Score=28.09 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccccc
Q 008135 511 EIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSIAF 567 (576)
Q Consensus 511 ek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~ 567 (576)
....+..+|..++|.++........ .+-...+.+-+.-|...|..+|. ++|+..
T Consensus 81 a~~~~~~~LLpv~DnLerAl~~~~~--~~~~~~l~~Gvemi~k~~~~vL~-k~Gv~~ 134 (194)
T PRK14153 81 VLEQVLLDLLEVTDNFERALESART--AEDMNSIVEGIEMVSKQFFSILE-KYGLER 134 (194)
T ss_pred HHHHHHHHHhhHHhHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHH-HCCCee
Confidence 3455666677777666665432211 11123477888888888888885 788843
No 385
>PRK14158 heat shock protein GrpE; Provisional
Probab=58.75 E-value=1.8e+02 Score=28.07 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccccc
Q 008135 511 EIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSIAF 567 (576)
Q Consensus 511 ek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~ 567 (576)
....+...+..++|.++........ +-...+.+-+.-|...|..+| +++|+..
T Consensus 88 a~~~~~~~lLpV~DnLerAl~~~~~---~~~~~i~~Gv~mi~k~l~~vL-ek~Gv~~ 140 (194)
T PRK14158 88 GNESLILEILPAVDNMERALDHADE---ESMSAIIEGIRMTLSMLLSTL-KKFGVTP 140 (194)
T ss_pred HHHHHHHHHHhHHhHHHHHHhccCc---chHHHHHHHHHHHHHHHHHHH-HHCCCEE
Confidence 3455666677777776665443211 112347888888888888888 5668843
No 386
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=58.45 E-value=2.3e+02 Score=29.23 Aligned_cols=146 Identities=17% Similarity=0.211 Sum_probs=83.9
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008135 392 STLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKK 471 (576)
Q Consensus 392 ~~ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~k 471 (576)
..+.+.|.+-..+++|....+..-.+.++++++.- +..+...++++..-+-+-...+-+|+++
T Consensus 149 KKlg~nIEKSvKDLqRctvSL~RYr~~lkee~d~S-----------------~k~ik~~F~~l~~cL~dREvaLl~Emdk 211 (302)
T PF07139_consen 149 KKLGPNIEKSVKDLQRCTVSLTRYRVVLKEEMDSS-----------------IKKIKQTFAELQSCLMDREVALLAEMDK 211 (302)
T ss_pred cccCccHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777778888888887776666666665443 3334444555554443333333333322
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhHH--HHHH
Q 008135 472 MEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKE--RMESKISKMNKG--ISET 547 (576)
Q Consensus 472 l~eele~~~~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~--~i~~~i~~~~~~--~~~~ 547 (576)
+-.||.+-|.+-+.+-+++.+-++-.-++-..+|.+|-.-|-.|-. +....|-..-.. -.+.
T Consensus 212 --------------VK~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK~fvs~rk~de~lg~~~rf~~d~~~ 277 (302)
T PF07139_consen 212 --------------VKAEAMEILDARQKKAEELKRLTDRASQMSEEQLAELRADIKHFVSERKYDEELGRAARFTCDPEQ 277 (302)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhHHHHhHhhhcccCHHH
Confidence 3345556677777778888877777777777777777665533311 111111111111 2455
Q ss_pred HHHHHHHHhcccccccccccc
Q 008135 548 ALTVSEAYKNSLPAQFSIAFG 568 (576)
Q Consensus 548 ~~~i~~~f~~~~~~~~~~~~~ 568 (576)
+.....+|=++..-+-+|+..
T Consensus 278 l~~~i~~~g~v~~~~~~ys~r 298 (302)
T PF07139_consen 278 LKKSIMSFGEVSHPKNSYSSR 298 (302)
T ss_pred HHHHHHhcCccccCcCCCCCC
Confidence 566667888887777777543
No 387
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=58.40 E-value=2.1e+02 Score=28.94 Aligned_cols=38 Identities=13% Similarity=0.295 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 242 EKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIG 279 (576)
Q Consensus 242 ~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele 279 (576)
-...+..++.++..++.....--..+...+.....-+.
T Consensus 78 ~~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~ 115 (296)
T PF13949_consen 78 LNASLRKELQKYREYLEQASESDSQLRSKLESIEENLE 115 (296)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 35678899999999998877666666666666655553
No 388
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=58.40 E-value=1.8e+02 Score=28.14 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008135 440 LQFHINEMETQLNLLSKETQEITKRCAEEAKKMEED 475 (576)
Q Consensus 440 Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~ee 475 (576)
.+..+.+.+.++...+.+..+-......+++...++
T Consensus 98 A~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~ 133 (205)
T PRK06231 98 AQQLLENAKQRHENALAQAKEIIDQANYEALQLKSE 133 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433444444433333
No 389
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=58.04 E-value=64 Score=25.99 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 284 EHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENAR 330 (576)
Q Consensus 284 e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~ 330 (576)
.++.+......|+.+|..-.-+..++..++...+.+...++.++.+.
T Consensus 12 dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V 58 (75)
T PF05531_consen 12 DIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKV 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544455566666666655555555544433
No 390
>PF14992 TMCO5: TMCO5 family
Probab=57.75 E-value=1.9e+02 Score=29.49 Aligned_cols=140 Identities=14% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 212 VSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELN---MRKEKMEKLVEEKEREIGKKVEEHKRI 288 (576)
Q Consensus 212 ~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~---~~~~~~e~~l~~l~~Ele~~~~e~~~l 288 (576)
+....+.|.+.+..+=. .+...+..+..|..++.+.....+.-+ .-+.+-+..+.+++.+-...+.+-+.+
T Consensus 9 le~d~Q~ldE~Nq~lL~------ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l 82 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQ------KIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHL 82 (280)
T ss_pred hHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhh
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 289 CEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMK 363 (576)
Q Consensus 289 ~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~ 363 (576)
..-+.+|++.++.|.-. +..|...++..+...+..+..+...+..++..+++..+....+..-|+..+.
T Consensus 83 ~~~~~elq~k~~e~~~~------~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~ 151 (280)
T PF14992_consen 83 SKSVQELQRKQDEQETN------VQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQAN 151 (280)
T ss_pred hhhhhhhhhhhccccCC------CCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 391
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.53 E-value=1.9e+02 Score=31.19 Aligned_cols=12 Identities=17% Similarity=0.158 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHh
Q 008135 545 SETALTVSEAYK 556 (576)
Q Consensus 545 ~~~~~~i~~~f~ 556 (576)
++.-++|++.-.
T Consensus 350 ~d~~~EV~~~la 361 (439)
T KOG2911|consen 350 LDRQEEVEDALA 361 (439)
T ss_pred HhhHHHHHHHHh
Confidence 344445544433
No 392
>PRK14155 heat shock protein GrpE; Provisional
Probab=57.43 E-value=1.5e+02 Score=28.92 Aligned_cols=59 Identities=12% Similarity=0.033 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHhcccccccccccccc
Q 008135 511 EIQIRALDLFALVDSVSKYKERMESK-ISKMNKGISETALTVSEAYKNSLPAQFSIAFGEC 570 (576)
Q Consensus 511 ek~~l~~el~~l~~~i~k~K~~i~~~-i~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~ 570 (576)
....+...|..++|.++......... ...--..+++-+.-|.+.|..+|. ++||..=+|
T Consensus 61 a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~~~~i~~Gvemi~k~~~~~L~-k~GV~~I~~ 120 (208)
T PRK14155 61 AIQKFARDLLGAADNLGRATAASPKDSADPAVKNFIIGVEMTEKELLGAFE-RNGLKKIDP 120 (208)
T ss_pred HHHHHHHHHhhHHhhHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHH-HCCCceecC
Confidence 45666677777777776665543321 011113477778888888888884 778844333
No 393
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=57.32 E-value=1.2e+02 Score=25.51 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 008135 315 ELQAVERDIADAENARNEWESKTW 338 (576)
Q Consensus 315 Er~~L~~~l~~~e~~~~~l~~~~~ 338 (576)
....++..++.++.....+..+..
T Consensus 70 ~~~~~~~~i~~l~~~~~~l~~~l~ 93 (106)
T PF01920_consen 70 RIEKLEKEIKKLEKQLKYLEKKLK 93 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333
No 394
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=57.22 E-value=2e+02 Score=28.16 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=36.1
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008135 392 STLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDA 439 (576)
Q Consensus 392 ~~ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~ 439 (576)
+.-+..+..|.+.+......+.++...++++++.+...+........+
T Consensus 22 Gy~~eEVdeFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~~~s 69 (212)
T COG3599 22 GYDEEEVDEFLDDVIDDYEQLLDENEDLEDEIDELKEELKEAADAEDS 69 (212)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 444555667788887777788888888888888888888887776444
No 395
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.21 E-value=3e+02 Score=30.29 Aligned_cols=255 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 200 GFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIG 279 (576)
Q Consensus 200 ~~~~kl~~~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele 279 (576)
+...++...+..+.-+...+.....+++.+...|.....-+.+ -+.+.+...+..+-....++... .. |.
T Consensus 165 e~~~~~~~~~~kl~ie~e~~~h~~qq~e~~l~t~~a~~e~~nr-----h~~erlk~~~~s~~e~l~kl~~E-qQ----lq 234 (613)
T KOG0992|consen 165 ERLRPIESVAEKLRIELEQLRHSTQQEENLLTTTLAAVEEENR-----HLKERLKIVEESRLESLGKLNSE-QQ----LQ 234 (613)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhHH-HH----HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008135 280 KKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECN 359 (576)
Q Consensus 280 ~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn 359 (576)
+...+.+.+.+++++|......-..|-.+- +..+++.+..+++.....-....+.++.+++++.+
T Consensus 235 ~~~~ehkllee~~~rl~~~~s~VegS~S~~-------------~l~~ek~r~~lee~~~~e~~e~rk~v~k~~~l~q~-- 299 (613)
T KOG0992|consen 235 ALIREHKLLEEHLERLHLQLSDVEGSWSGQ-------------NLALEKQRSRLEEQVAEETTEKRKAVKKRDDLIQS-- 299 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccchh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred HHHHHccCCcceeEeeCCCCCCCccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008135 360 QAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDA 439 (576)
Q Consensus 360 ~~~~kl~l~~d~~~~ln~~~~~~~ei~~~~~k~~ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~ 439 (576)
.+.-+..|. ..+..+....+...-+.+-.+++.-.+...+.++
T Consensus 300 ----------------------------------~~~~~~eL~-K~kde~~~n~~~~~lie~lq~el~~al~~c~eeN-- 342 (613)
T KOG0992|consen 300 ----------------------------------RKQVSFELE-KAKDEIKQNDDKVKLIEELQDELSVALKECREEN-- 342 (613)
T ss_pred ----------------------------------HHHHHHHHH-HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhh--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 440 LQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDL 519 (576)
Q Consensus 440 Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el 519 (576)
..+.+++.++..++........+--.+.......- ..+.-.++++++++-++...+.+.+.-|
T Consensus 343 ------~~~t~~n~e~~~lq~~etek~ee~tlla~~~dr~s-----------e~~e~teqkleelk~~f~a~q~K~a~ti 405 (613)
T KOG0992|consen 343 ------KIETQVNFERNKLQNEETEKKEEKTLLAAADDRFS-----------EYSELTEQKLEELKVQFTAKQEKHAETI 405 (613)
T ss_pred ------hHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 008135 520 FALVDSVSKYKERM 533 (576)
Q Consensus 520 ~~l~~~i~k~K~~i 533 (576)
..|-.-+..|+-.+
T Consensus 406 keL~~El~~yrr~i 419 (613)
T KOG0992|consen 406 KELEIELEEYRRAI 419 (613)
T ss_pred HHHHHHHHHHHHhc
No 396
>PRK00736 hypothetical protein; Provisional
Probab=57.19 E-value=94 Score=24.45 Aligned_cols=37 Identities=5% Similarity=0.205 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 008135 412 KLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEME 448 (576)
Q Consensus 412 ~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~ 448 (576)
+...+--+++.+++++..+......|..|+.++..|.
T Consensus 10 LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~ 46 (68)
T PRK00736 10 LEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444333
No 397
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=57.15 E-value=2.7e+02 Score=29.82 Aligned_cols=101 Identities=18% Similarity=0.209 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhh----HHHH---HHHHH--HHHHHHHHHHHH
Q 008135 435 KRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLD----MVER---EAVEV--LKASESKFQEAI 505 (576)
Q Consensus 435 ~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~----~~~~---ea~~e--l~~~~~~~ee~~ 505 (576)
..|...+.-.++|.+++....+|+.+. ...|+.++..|.....-++ +++. --+-+ -+..+.++-.-.
T Consensus 278 ~ri~etqdar~kL~~ql~k~leEi~~~----e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvELCrD~AQ~~L~~EV 353 (421)
T KOG2685|consen 278 KRIRETQDARNKLEWQLAKTLEEIADA----ENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVELCRDQAQYRLVDEV 353 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHHHHhHHHHHHHHHH
Confidence 445555666666666666666555432 3345555555554321111 1110 00001 133344443333
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 008135 506 RQCEEEIQIRALDLFALVD---SVSKYKERMESKISK 539 (576)
Q Consensus 506 ~e~eeek~~l~~el~~l~~---~i~k~K~~i~~~i~~ 539 (576)
.+++.-...|..+|.+..+ .+.+++..++..|+-
T Consensus 354 ~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~ 390 (421)
T KOG2685|consen 354 HELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAI 390 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555443 336666666666654
No 398
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=57.03 E-value=1.8e+02 Score=27.57 Aligned_cols=17 Identities=6% Similarity=-0.195 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008135 507 QCEEEIQIRALDLFALV 523 (576)
Q Consensus 507 e~eeek~~l~~el~~l~ 523 (576)
.++.++.....+|..+.
T Consensus 135 ~I~~~k~~a~~~l~~~a 151 (181)
T PRK13454 135 RIAEIRAGALESVEEVA 151 (181)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 399
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.79 E-value=3.2e+02 Score=30.43 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008135 283 EEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMEC 358 (576)
Q Consensus 283 ~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~y 358 (576)
.+|+.-..++.+|+..|..-.- +...-....-.|+.....+.......+.+..++++.+..+.++.-++-.+.
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~---~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qL 403 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQA---ELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQL 403 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555443211 111111112223333444555666677788888888877777766664443
No 400
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=56.77 E-value=3.3e+02 Score=30.64 Aligned_cols=61 Identities=21% Similarity=0.346 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Q 008135 177 MYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVL 246 (576)
Q Consensus 177 ~y~~~~Y~~fl~g~d~~~~~l~~~~~~kl~~~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L 246 (576)
.-+..+|..|-.-.. +. ..+........++...|+-.+.+|+.+.-.|+..+.|..+.+.|
T Consensus 157 ~~~~~~y~~w~~~~~--------~l-~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rL 217 (557)
T COG0497 157 EAYQEAYQAWKQARR--------EL-EDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRL 217 (557)
T ss_pred HHHHHHHHHHHHHHH--------HH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 335677777733222 11 12233333444455555566666666555555555555554443
No 401
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=56.31 E-value=2.2e+02 Score=28.52 Aligned_cols=8 Identities=25% Similarity=0.517 Sum_probs=2.9
Q ss_pred HhhhHHHH
Q 008135 335 SKTWDLDS 342 (576)
Q Consensus 335 ~~~~~~e~ 342 (576)
++..++..
T Consensus 87 ~~a~~L~~ 94 (264)
T PF06008_consen 87 QRAQDLEQ 94 (264)
T ss_pred HHHHHHHH
Confidence 33333333
No 402
>PRK14139 heat shock protein GrpE; Provisional
Probab=56.17 E-value=1.9e+02 Score=27.64 Aligned_cols=50 Identities=12% Similarity=0.036 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccc
Q 008135 511 EIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSI 565 (576)
Q Consensus 511 ek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~~~ 565 (576)
....+..+|..++|.++....... .-...+.+-+.-|...|..+|. ++|+
T Consensus 80 a~~~~~~~LLpv~DnLerAl~~~~----~~~~~l~~Gv~mi~k~l~~vL~-k~Gv 129 (185)
T PRK14139 80 AIESFAESLLPVKDSLEAALADES----GDLEKLREGVELTLKQLTSAFE-KGRV 129 (185)
T ss_pred HHHHHHHHHhhHHhHHHHHHhccc----chHHHHHHHHHHHHHHHHHHHH-HCCC
Confidence 345566667777776666543211 1113377778888888888885 5687
No 403
>PRK14147 heat shock protein GrpE; Provisional
Probab=56.16 E-value=1.8e+02 Score=27.40 Aligned_cols=52 Identities=6% Similarity=-0.003 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccccc
Q 008135 511 EIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSIAF 567 (576)
Q Consensus 511 ek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~ 567 (576)
....+...|..++|.++......... ...|.+-+.-|...|..+|. ++|+..
T Consensus 66 a~~~~~~~lLpv~DnlerAl~~~~~~----~~~l~~Gv~mi~k~l~~~L~-~~Gv~~ 117 (172)
T PRK14147 66 ANEKLLGELLPVFDSLDAGLTAAGTE----PSPLRDGLELTYKQLLKVAA-DNGLTL 117 (172)
T ss_pred HHHHHHHHHhhhhhHHHHHHhcccch----HHHHHHHHHHHHHHHHHHHH-HCCCEE
Confidence 44666677777777776665432211 23477778888888888887 458743
No 404
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=56.15 E-value=95 Score=28.72 Aligned_cols=21 Identities=14% Similarity=0.431 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 008135 305 NARDVERMRRELQAVERDIAD 325 (576)
Q Consensus 305 s~~di~r~~~Er~~L~~~l~~ 325 (576)
+..|++.++.++..|+.....
T Consensus 49 ~~~d~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 49 SAKDNEELKKQIEELQAKNKT 69 (155)
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 566788888888877777763
No 405
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=55.96 E-value=1.1e+02 Score=32.26 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 236 REKLEKEKCVLEED-LNKFNAIIGELNMRKEKMEKLVEEKER 276 (576)
Q Consensus 236 l~~l~~~~~~L~~D-~~K~~~~i~~l~~~~~~~e~~l~~l~~ 276 (576)
++.+-..+..++.| +.||-.+++.=..||..++..|...+.
T Consensus 167 lE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 167 LEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 44444455555555 467777777777777777666666543
No 406
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=55.87 E-value=1.1e+02 Score=24.61 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRI 288 (576)
Q Consensus 256 ~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l 288 (576)
.|..+..++.+.+..+..+...++....++..+
T Consensus 34 ~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 34 TIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 407
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=55.54 E-value=1.2e+02 Score=26.07 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 306 ARDVERMRRELQAVERDIADAENAR 330 (576)
Q Consensus 306 ~~di~r~~~Er~~L~~~l~~~e~~~ 330 (576)
..|+.++.-+...++.++..+...+
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444444444444444444443333
No 408
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=55.49 E-value=3.6e+02 Score=31.48 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 309 VERMRRELQAVERDIADAENARNE 332 (576)
Q Consensus 309 i~r~~~Er~~L~~~l~~~e~~~~~ 332 (576)
+..++..+..|++.+..++.....
T Consensus 341 v~~l~~~~~~L~~~~~~l~~~~~~ 364 (726)
T PRK09841 341 YRALLEKRQTLEQERKRLNKRVSA 364 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555555444433
No 409
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=55.46 E-value=3e+02 Score=29.71 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008135 242 EKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVER 321 (576)
Q Consensus 242 ~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~ 321 (576)
+...|+.-++++-..+-=|-.-..-....+..|+.||+.=..+..+-..+ |+. .|-++.-+++.+..++..|+.
T Consensus 480 ~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~~e---lq~---eq~~t~~a~epL~~~la~lq~ 553 (583)
T KOG3809|consen 480 KMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNEQE---LQN---EQAATFGASEPLYNILANLQK 553 (583)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHH---HHh---hhhcccccchHHHHHHHHHHH
Confidence 44444444444443333333334444555566666666544444443333 222 255666678888888888888
Q ss_pred HHHHHHHHHHHHHHhhhHHHH
Q 008135 322 DIADAENARNEWESKTWDLDS 342 (576)
Q Consensus 322 ~l~~~e~~~~~l~~~~~~~e~ 342 (576)
.|......+...+..+-+-+.
T Consensus 554 ~I~d~~e~i~~~r~~IL~Ne~ 574 (583)
T KOG3809|consen 554 EINDTKEEISKARGRILNNEK 574 (583)
T ss_pred HHHHHHHHHHHHHHHHhhhHH
Confidence 887776666666655544333
No 410
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=55.41 E-value=2.2e+02 Score=28.21 Aligned_cols=36 Identities=11% Similarity=-0.037 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 489 EAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVD 524 (576)
Q Consensus 489 ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~ 524 (576)
.+.+....|+..|......++.-+......+....+
T Consensus 182 ka~~~~~k~e~~y~~~~~~l~~~~~~~~~~~~~~~~ 217 (239)
T cd07658 182 KGEESRLKAENEYYTCCVRLERLRLEWESALRKGLN 217 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666554444444444444444333
No 411
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=55.35 E-value=1.7e+02 Score=27.17 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=17.3
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 388 VDYKSTLKPALESFADDVKRSSVEKLEELIS 418 (576)
Q Consensus 388 ~~~k~~ik~~L~~l~~ei~~~~~~~~~e~~~ 418 (576)
..+...|+..-..+...++..+..+.+++..
T Consensus 26 ~Ev~~aik~~sd~~~~~l~~~~~~l~eeik~ 56 (155)
T PF07464_consen 26 QEVVKAIKEQSDSVAQQLQNVSSSLQEEIKD 56 (155)
T ss_dssp S-SSHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566666666666666555555554433
No 412
>PRK00846 hypothetical protein; Provisional
Probab=55.17 E-value=1.1e+02 Score=24.75 Aligned_cols=44 Identities=16% Similarity=0.091 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (576)
Q Consensus 256 ~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l 299 (576)
-+..|+.++.-.+..|.++.+.+-.....+..++..+..|..++
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433344444444444443333
No 413
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=54.97 E-value=56 Score=35.68 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 008135 289 CEENEEFKKRV 299 (576)
Q Consensus 289 ~~e~~eL~~~l 299 (576)
+.++..|+.++
T Consensus 110 EaE~~~Lk~Ql 120 (475)
T PRK13729 110 GQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 414
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=54.91 E-value=1.5e+02 Score=26.14 Aligned_cols=105 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcceeEeeCCCCCCCccc
Q 008135 306 ARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEV 385 (576)
Q Consensus 306 ~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~l~~d~~~~ln~~~~~~~ei 385 (576)
+..+.++-.+.+.|+..+..+..++..++....+.+. ..++++.+ ++
T Consensus 5 pp~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~----al~Ele~l---------------------------~e-- 51 (119)
T COG1382 5 PPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEK----ALEELEKL---------------------------DE-- 51 (119)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcC---------------------------Cc--
Q ss_pred cchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 386 MGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQE 460 (576)
Q Consensus 386 ~~~~~k~~ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~ee 460 (576)
...+-..+-+.|... +..+-++++...++..+.++.+|+.+-..+..+|+.++.++..
T Consensus 52 -D~~vYk~VG~llvk~----------------~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 52 -DAPVYKKVGNLLVKV----------------SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred -ccHHHHHhhhHHhhh----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 415
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=54.75 E-value=1.7e+02 Score=32.57 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=54.3
Q ss_pred HHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 008135 223 VSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEE-FKKRVK 300 (576)
Q Consensus 223 ~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~e-L~~~l~ 300 (576)
...|=.+.+.|.-++.+-........-..|+...+..+..+..++...+.+++-.|......-+.|+..++. |.++..
T Consensus 421 ~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ISk~y~ 499 (507)
T PF05600_consen 421 TQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEADISKRYK 499 (507)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444667777777777777777777788888888888888888887777777777766666666666544 444433
No 416
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=54.73 E-value=77 Score=27.28 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 213 SEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVL--EEDLNKFNAIIGELNMRKEKMEKLVEEK 274 (576)
Q Consensus 213 ~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L--~~D~~K~~~~i~~l~~~~~~~e~~l~~l 274 (576)
.+.+..+.+.+.+.+ .++..++.+...| ..|+.+++--+..+...+..+...+..+
T Consensus 34 ~~~~~~l~~~~~~~~------~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 34 REDIEKLEERLDEHD------RRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334444444444443 2555555555555 5555555555555555555554444444
No 417
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=54.58 E-value=1.7e+02 Score=26.62 Aligned_cols=14 Identities=29% Similarity=0.264 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 008135 446 EMETQLNLLSKETQ 459 (576)
Q Consensus 446 ~l~~ql~~lk~e~e 459 (576)
+.+.++...+.+..
T Consensus 60 e~~~~l~~a~~ea~ 73 (156)
T PRK05759 60 KYEAQLAEARAEAA 73 (156)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 418
>PRK14162 heat shock protein GrpE; Provisional
Probab=54.55 E-value=1.9e+02 Score=27.80 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccc
Q 008135 511 EIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSI 565 (576)
Q Consensus 511 ek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~~~ 565 (576)
....+..+|..++|.++........ ++....|.+-+.-|...|..+|. ++|+
T Consensus 87 a~~~~~~~LLpV~DnLerAl~~~~~--~~~~~~l~~Gvemi~k~l~~vL~-~~GV 138 (194)
T PRK14162 87 ESQSLAKDVLPAMDNLERALAVKAD--DEAAKQLKKGVQMTLDHLVKALK-DHGV 138 (194)
T ss_pred HHHHHHHHHhhHHhHHHHHHhcccc--chhHHHHHHHHHHHHHHHHHHHH-HCCC
Confidence 3455566666666666655432211 11123477888888888888885 6688
No 419
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=54.42 E-value=1.4e+02 Score=25.48 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 259 ELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEE 294 (576)
Q Consensus 259 ~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~e 294 (576)
.++.++..++..+..+...+.....++..++.++.+
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444333
No 420
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=54.41 E-value=1.9e+02 Score=27.09 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=20.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008135 428 AKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEED 475 (576)
Q Consensus 428 ~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~ee 475 (576)
..+.+.+......+..+.+.+.++...+.+..+-......+++...++
T Consensus 56 ~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~ 103 (175)
T PRK14472 56 SSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAE 103 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444445555555444444444444333333
No 421
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=54.25 E-value=1.9e+02 Score=27.01 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008135 440 LQFHINEMETQLNLLSKETQEITKRCAEEAKKME 473 (576)
Q Consensus 440 Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~ 473 (576)
.+....+.+.++...+.+..+-......+++...
T Consensus 72 a~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~ 105 (167)
T PRK08475 72 SKEKKEDALKKLEEAKEKAELIVETAKKEAYILT 105 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444333333443333
No 422
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=54.16 E-value=78 Score=34.55 Aligned_cols=12 Identities=8% Similarity=0.382 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 008135 286 KRICEENEEFKK 297 (576)
Q Consensus 286 ~~l~~e~~eL~~ 297 (576)
+.|++....+..
T Consensus 90 ~~L~~r~~~id~ 101 (472)
T TIGR03752 90 ERLQKREQSIDQ 101 (472)
T ss_pred HHHHHhhhhHHH
Confidence 333333333333
No 423
>PLN02320 seryl-tRNA synthetase
Probab=53.88 E-value=75 Score=35.22 Aligned_cols=46 Identities=11% Similarity=0.208 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 286 KRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNE 332 (576)
Q Consensus 286 ~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~ 332 (576)
+.++.++..+.+++.. ....++.+.+..+...|++.+..++..+..
T Consensus 110 ~~lr~ern~~sk~i~~-~~~~~~~~~l~~~~k~lk~~i~~le~~~~~ 155 (502)
T PLN02320 110 ERLRAERNAVANKMKG-KLEPSERQALVEEGKNLKEGLVTLEEDLVK 155 (502)
T ss_pred HHHHHHHHHHHHHHHh-hhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455454443 122234455555555555555544444433
No 424
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=53.76 E-value=3.2e+02 Score=29.53 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008135 438 DALQFHINEMETQLNLLSKET 458 (576)
Q Consensus 438 ~~Le~kl~~l~~ql~~lk~e~ 458 (576)
..+..+...+..+++..+.++
T Consensus 314 ~~~~~~~~~l~~~l~~~~~~~ 334 (444)
T TIGR03017 314 RILKQREAELREALENQKAKV 334 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555444433
No 425
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=53.47 E-value=2.3e+02 Score=27.90 Aligned_cols=94 Identities=17% Similarity=0.227 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008135 400 SFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTE 479 (576)
Q Consensus 400 ~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~ 479 (576)
.|..+.-.....+.+....++..+......++..+..+..|+.++.++..+.+.++.... ..+..+.|...
T Consensus 85 ~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~---------~akA~~~v~~~ 155 (225)
T COG1842 85 DLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA---------AAKAQEKVNRS 155 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 344444444445555556666666666666666666666666666666666666554332 22222334433
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH
Q 008135 480 AHNLDMVEREAVEVLKASESKFQEA 504 (576)
Q Consensus 480 ~~~~~~~~~ea~~el~~~~~~~ee~ 504 (576)
-.++.. ..+...+...+.+.++.
T Consensus 156 ~~~~s~--~sa~~~fer~e~kiee~ 178 (225)
T COG1842 156 LGGGSS--SSAMAAFERMEEKIEER 178 (225)
T ss_pred hcCCCc--hhhHHHHHHHHHHHHHH
Confidence 223332 34445555555555553
No 426
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.42 E-value=3.2e+02 Score=29.45 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 008135 278 IGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSME 357 (576)
Q Consensus 278 le~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~ 357 (576)
+.+..-....+++...-|+.++ +.+.+.+.--++.++..+.+...++.+++.+...++ .+++.++.+..+
T Consensus 218 l~al~llv~tLee~~~~LktqI------V~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~----ekv~~~qti~~e 287 (446)
T KOG4438|consen 218 LNALKLLVVTLEENANCLKTQI------VQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILE----EKVTNLQTIEKE 287 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHhHHHHHHHHH
Confidence 3333333444444444454442 334555555555555556666666666666655544 466666666666
Q ss_pred HHHHHHHc
Q 008135 358 CNQAMKRL 365 (576)
Q Consensus 358 yn~~~~kl 365 (576)
.+.+..++
T Consensus 288 ~~~~lk~i 295 (446)
T KOG4438|consen 288 LKALLKKI 295 (446)
T ss_pred HHHHHHHH
Confidence 66655544
No 427
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=53.42 E-value=96 Score=35.59 Aligned_cols=62 Identities=10% Similarity=0.183 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008135 276 REIGKKVEEHKRICEENEEFKKRVKLQTI-N---ARDVERMRRELQAVERDIADAENARNEWESKT 337 (576)
Q Consensus 276 ~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~-s---~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~ 337 (576)
++++..+.+++.++.++.+|...+..-.+ + ...+..+..++..++..++.+.....++....
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~ 628 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQL 628 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666677666654322 1 22577777888888888887777776666543
No 428
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=53.35 E-value=71 Score=32.23 Aligned_cols=13 Identities=15% Similarity=-0.355 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCCC
Q 008135 16 PTPDLYGGNRFGG 28 (576)
Q Consensus 16 ~~~~~~~~~~~~~ 28 (576)
|-|||..+|-++-
T Consensus 19 ~F~ppgiFtNA~l 31 (259)
T PF08657_consen 19 PFPPPGIFTNALL 31 (259)
T ss_pred CCCCCCCchhccc
Confidence 4455544555554
No 429
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=53.33 E-value=1.7e+02 Score=30.51 Aligned_cols=43 Identities=33% Similarity=0.466 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhccCCCC------hHHHHHHHHHHHHHHHHHHHHH
Q 008135 214 EYVEELKKKVSEMEGAMTGPT------EREKLEKEKCVLEEDLNKFNAI 256 (576)
Q Consensus 214 ~~~~~L~~~~~~le~l~~~~~------~l~~l~~~~~~L~~D~~K~~~~ 256 (576)
..+..+.....+|+.+...|+ ....+-++.+.|+.=+.+|..|
T Consensus 7 ~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~ 55 (363)
T COG0216 7 EKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREY 55 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566667776555553 3334444444444444444444
No 430
>PRK14141 heat shock protein GrpE; Provisional
Probab=53.27 E-value=1.9e+02 Score=28.26 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHhccccccccc
Q 008135 511 EIQIRALDLFALVDSVSKYKERMESKI----SKMNKGISETALTVSEAYKNSLPAQFSI 565 (576)
Q Consensus 511 ek~~l~~el~~l~~~i~k~K~~i~~~i----~~~~~~~~~~~~~i~~~f~~~~~~~~~~ 565 (576)
....+..+|..++|.++.....+.... +..-..|++-+.-|...|..+|. ++|+
T Consensus 79 a~~~~~~dLLpViDnLerAl~~~~~~~~~~~~~~~~~l~eGv~mi~k~l~~vLe-k~GV 136 (209)
T PRK14141 79 GIAGFARDMLSVSDNLRRALDAIPAEARAAADAGLKALIEGVEMTERAMLNALE-RHGV 136 (209)
T ss_pred HHHHHHHHHhhhHhHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHH-HCCC
Confidence 456677777777777776654432211 11113477777777778888887 6777
No 431
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=52.88 E-value=2.4e+02 Score=27.87 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 008135 294 EFKKRVKLQTINARDVERMRRELQAVERDIA 324 (576)
Q Consensus 294 eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~ 324 (576)
.|...+...--..+++...-++|..++.+..
T Consensus 9 ~l~~~~~~g~~~~~~l~~f~keRa~iE~eYa 39 (251)
T cd07653 9 NLEKHTQKGIDFLERYGKFVKERAAIEQEYA 39 (251)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445566666666666655554
No 432
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=52.50 E-value=2.7e+02 Score=32.31 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=8.7
Q ss_pred HHHHHhcCCHHHHHHHH
Q 008135 297 KRVKLQTINARDVERMR 313 (576)
Q Consensus 297 ~~l~~Q~~s~~di~r~~ 313 (576)
..|..-.+++.+..-+.
T Consensus 93 ~Ll~~l~i~~~~l~~L~ 109 (701)
T PF09763_consen 93 NLLDTLSIPEEHLEALR 109 (701)
T ss_pred HHHHhcCCCHHHHHHHh
Confidence 33444455666655555
No 433
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=52.46 E-value=1e+02 Score=28.38 Aligned_cols=136 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 008135 416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLK 495 (576)
Q Consensus 416 ~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~ 495 (576)
...+-+....+...+......+..|+..++..+..++.....+.+-...+.+....++++.......+......+...-.
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~~~~~~~~~ 101 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLDDSGVLELPE 101 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccccccccccc
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHH
Q 008135 496 ASESKFQEAIRQCEEEIQIR-ALDLFALVDSVSKYKERMESKISKMNKG--ISETALTVSE 553 (576)
Q Consensus 496 ~~~~~~ee~~~e~eeek~~l-~~el~~l~~~i~k~K~~i~~~i~~~~~~--~~~~~~~i~~ 553 (576)
...... +.......-..+ ..++..++..+.+|.+-|++....+..- +++...+..+
T Consensus 102 ~~~~~~--~~~~~~~~~~~l~d~el~~l~~ql~~hl~s~~~n~~~l~~~~~~ie~~~~~Ld 160 (160)
T PF13094_consen 102 LPQKSL--LEASESRFAPTLCDEELLPLLKQLNKHLESMQNNLQQLKGLLEAIERSYAALD 160 (160)
T ss_pred cccccc--ccccccccCcccchHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcC
No 434
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=52.31 E-value=1.8e+02 Score=26.12 Aligned_cols=40 Identities=28% Similarity=0.398 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (576)
Q Consensus 256 ~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL 295 (576)
.+.-++.++..++..+..+..++..+..+++.+.....++
T Consensus 95 A~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 95 AIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555554444444444444444444
No 435
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=52.04 E-value=2.9e+02 Score=28.47 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 262 MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENA 329 (576)
Q Consensus 262 ~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~ 329 (576)
..+..+...+..++..+...+.++...+.+.++.+.-.+..-+|..+++........++..++.+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~~ 157 (327)
T TIGR02971 90 RAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALAS 157 (327)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666677777777777888888888888889999999999998887777776655433
No 436
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=51.82 E-value=2e+02 Score=26.60 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 008135 520 FALVDSVSKYKERMESKISKMNKGISETALTVSEAYKN 557 (576)
Q Consensus 520 ~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~ 557 (576)
..+-+.+...-..+...++..-..|...++.+.+.|.+
T Consensus 158 ~~l~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~ 195 (202)
T PF01442_consen 158 EELRESLEEKAEELKETLDQRIEELESSIDRISEDIEE 195 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444443
No 437
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=51.68 E-value=2e+02 Score=26.68 Aligned_cols=98 Identities=7% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 203 EKLEKEKENVSEYVEELKKKVSEMEG-AMTGPTEREKLEKEKCVLEE--------DLNKFNAIIGELNMRKEKMEKLVEE 273 (576)
Q Consensus 203 ~kl~~~~~~~~~~~~~L~~~~~~le~-l~~~~~~l~~l~~~~~~L~~--------D~~K~~~~i~~l~~~~~~~e~~l~~ 273 (576)
+++...+.+....+..+.....+... ....-..+......+..+.. ++...+.|...+..+...++..+..
T Consensus 18 ~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e~~~a~ 97 (158)
T PF09486_consen 18 RRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAEAELAA 97 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 274 KEREIGKKVEEHKRICEENEEFKKRVK 300 (576)
Q Consensus 274 l~~Ele~~~~e~~~l~~e~~eL~~~l~ 300 (576)
+...+..+..++......+..+..+|+
T Consensus 98 l~~~l~~~~~~ia~~~raIarn~a~id 124 (158)
T PF09486_consen 98 LRQALRAAEDEIAATRRAIARNDARID 124 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH
No 438
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=51.47 E-value=1.8e+02 Score=26.13 Aligned_cols=78 Identities=13% Similarity=0.228 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135 260 LNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK---LQTINARDVERMRRELQAVERDIADAENARNEWESK 336 (576)
Q Consensus 260 l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~---~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~ 336 (576)
.+..-......+......+......+..|.....+....+. .+|+++.+.-..+.=+..|...|......+..++..
T Consensus 14 ~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ 93 (147)
T PRK05689 14 AEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQQLTQWTQK 93 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555666666666666667777666666666543 468998887666666677776666555555555544
Q ss_pred h
Q 008135 337 T 337 (576)
Q Consensus 337 ~ 337 (576)
+
T Consensus 94 v 94 (147)
T PRK05689 94 V 94 (147)
T ss_pred H
Confidence 4
No 439
>PRK11519 tyrosine kinase; Provisional
Probab=51.44 E-value=4.5e+02 Score=30.64 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008135 312 MRRELQAVERDIADAENAR 330 (576)
Q Consensus 312 ~~~Er~~L~~~l~~~e~~~ 330 (576)
+...+..|++.++.++...
T Consensus 344 l~~~~~~L~~~~~~l~~~~ 362 (719)
T PRK11519 344 LLEKRKALEDEKAKLNGRV 362 (719)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444544444444433
No 440
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=51.29 E-value=1.7e+02 Score=25.80 Aligned_cols=33 Identities=9% Similarity=0.180 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135 446 EMETQLNLLSKETQEITKRCAEEAKKMEEDIQT 478 (576)
Q Consensus 446 ~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~ 478 (576)
.+..++++.+..++.+.....++.+.....|+.
T Consensus 81 ~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~ 113 (131)
T KOG1760|consen 81 KLQDQLEEKKETLEKEIEELESELESISARMDE 113 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333333
No 441
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=50.89 E-value=93 Score=28.69 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccccccccccc
Q 008135 512 IQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSIAFGEC 570 (576)
Q Consensus 512 k~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~ 570 (576)
...+...|..++|.+........ -..-...+.+.+..+.+.|.++| +.+||..=+|
T Consensus 60 ~~~~~~~ll~v~D~l~~a~~~~~--~~~~~~~~~~g~~~~~~~l~~~L-~~~Gv~~i~~ 115 (165)
T PF01025_consen 60 LEKFLKDLLPVLDNLERALEAAK--SNEEEESLLEGLEMILKQLEDIL-EKNGVEEIEP 115 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-S--HHCTCHHHHHHHHHHHHHHHHHH-HTTTEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh--ccchHHHHHHHHHHHHHHHHHHH-HHCCCEecCC
Confidence 45556667777776666543332 01112348888899999999999 7788844433
No 442
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=50.50 E-value=1.5e+02 Score=24.71 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIG 279 (576)
Q Consensus 237 ~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele 279 (576)
..++.+...|..|..++-.-+++...+...|+....++...|.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~ 77 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLD 77 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666655555555555555555544444443
No 443
>PRK00846 hypothetical protein; Provisional
Probab=50.41 E-value=1.4e+02 Score=24.28 Aligned_cols=37 Identities=19% Similarity=0.035 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135 409 SVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHIN 445 (576)
Q Consensus 409 ~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~ 445 (576)
+..+...+.-.+..+++++..+......+..|+.++.
T Consensus 15 i~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~ 51 (77)
T PRK00846 15 LVELETRLSFQEQALTELSEALADARLTGARNAELIR 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444333333333333333
No 444
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=50.38 E-value=2.4e+02 Score=27.10 Aligned_cols=112 Identities=15% Similarity=0.111 Sum_probs=53.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcc-----CCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 203 EKLEKEKENVSEYVEELKKKVSEMEGAM-----TGP-TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKER 276 (576)
Q Consensus 203 ~kl~~~~~~~~~~~~~L~~~~~~le~l~-----~~~-~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~ 276 (576)
-+|+..++.+......|+..+.++.... .+. .+.-.+-++++.++.-+.+..+.+.+++ ..+..++.
T Consensus 30 l~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLE-------q~~~~iE~ 102 (191)
T PTZ00446 30 LKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLE-------DNMINLEN 102 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 3677777778777777877776665411 111 0111112223333333333333333333 33333321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 008135 277 EIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIA 324 (576)
Q Consensus 277 Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~ 324 (576)
-. ....-+..++.-...|+..- .++++++|+.+.-+.......-+
T Consensus 103 a~-~~~ev~~aLk~g~~aLK~~~--k~~~idkVd~lmDei~E~~e~~~ 147 (191)
T PTZ00446 103 MH-LHKIAVNALSYAANTHKKLN--NEINTQKVEKIIDTIQENKDIQE 147 (191)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHH
Confidence 11 11122344455555554432 55788888887766655443333
No 445
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=50.36 E-value=97 Score=25.36 Aligned_cols=56 Identities=29% Similarity=0.330 Sum_probs=37.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 234 TEREKLEKEKCVLEEDLNKFNAIIGE---LNMRKEKMEKLVEEKEREIGKKVEEHKRIC 289 (576)
Q Consensus 234 ~~l~~l~~~~~~L~~D~~K~~~~i~~---l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~ 289 (576)
.....+......++-.+++..+++.+ +..-.++|+..|..+++++..+..-+..+.
T Consensus 21 ~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 21 LSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777778888888777 445677777777777777766655554443
No 446
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=50.34 E-value=1.4e+02 Score=32.47 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 008135 269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINAR-DVERMRRELQAVERDIADAENAR 330 (576)
Q Consensus 269 ~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~-di~r~~~Er~~L~~~l~~~e~~~ 330 (576)
.++-++..+......+.+.++.++.++.+.|....-... ++..+..+...+..++..++...
T Consensus 29 ~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~ 91 (429)
T COG0172 29 DKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAAL 91 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHH
Confidence 334444444455555566677777777777764332222 45556666666666555544443
No 447
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=50.17 E-value=2.3e+02 Score=26.92 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 008135 309 VERMRRELQAVERDIADAENARNEWESKTWDLD 341 (576)
Q Consensus 309 i~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e 341 (576)
.+.++...+.|..++..+......+....-..+
T Consensus 90 LEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 90 LEQARKANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555444444433333
No 448
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=50.11 E-value=1.5e+02 Score=24.85 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 247 EEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (576)
Q Consensus 247 ~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~ 300 (576)
...+.+...-+..++.++..+...+..-.++.-+.......+..++..|...+.
T Consensus 16 ~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 16 SEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333344444444444333
No 449
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=49.90 E-value=2e+02 Score=32.03 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRK 264 (576)
Q Consensus 235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~ 264 (576)
.+..|++++..++..+...++-+..++..+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555444444444444443333
No 450
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=49.47 E-value=2.3e+02 Score=26.70 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=16.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 425 EMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEIT 462 (576)
Q Consensus 425 ~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~ 462 (576)
.+...+++.+......+..+.+.+.++...+.+..+-.
T Consensus 62 ~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii 99 (184)
T PRK13455 62 GIRSELEEARALREEAQTLLASYERKQREVQEQADRIV 99 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433444444444444444444444433
No 451
>PRK14149 heat shock protein GrpE; Provisional
Probab=49.25 E-value=2.1e+02 Score=27.41 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccccccc
Q 008135 510 EEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSIA 566 (576)
Q Consensus 510 eek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~~~~ 566 (576)
-....+..+|..++|.++......... .-...+.+-+.-|.+.|..+|. ++|+.
T Consensus 83 ~a~~~~~~~LLpVlDnLerAl~~~~~~--~~~~~l~~Gv~mi~k~l~~vL~-k~GV~ 136 (191)
T PRK14149 83 YAYEKIALDLLPVIDALLGALKSAAEV--DKESALTKGLELTMEKLHEVLA-RHGIE 136 (191)
T ss_pred HHHHHHHHHHhhHHhHHHHHHhccccc--cchHHHHHHHHHHHHHHHHHHH-HCCCE
Confidence 345666677777777776664432211 1123477888888888888887 67773
No 452
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=49.11 E-value=3.3e+02 Score=28.39 Aligned_cols=27 Identities=11% Similarity=0.062 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 500 KFQEAIRQCEEEIQIRALDLFALVDSV 526 (576)
Q Consensus 500 ~~ee~~~e~eeek~~l~~el~~l~~~i 526 (576)
+.+.+.-+++-++..|..++.+...+-
T Consensus 242 qvek~i~EfdiEre~LRAel~ree~r~ 268 (561)
T KOG1103|consen 242 QVEKLIEEFDIEREFLRAELEREEKRQ 268 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555444333
No 453
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=49.04 E-value=1.1e+02 Score=26.37 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008135 256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTI 304 (576)
Q Consensus 256 ~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~ 304 (576)
.+.+++..+..+-+.+..+++.+.....+-..|+-|++.|+.++..+.+
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~ 57 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTL 57 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccc
Confidence 4556666677777777788888877788888888888888888887443
No 454
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=49.00 E-value=1.5e+02 Score=28.11 Aligned_cols=6 Identities=17% Similarity=0.451 Sum_probs=2.6
Q ss_pred HHHHHH
Q 008135 203 EKLEKE 208 (576)
Q Consensus 203 ~kl~~~ 208 (576)
.++.++
T Consensus 96 ~~fraQ 101 (192)
T PF05529_consen 96 KKFRAQ 101 (192)
T ss_pred HHHHHH
Confidence 344444
No 455
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=48.87 E-value=2.3e+02 Score=26.47 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008135 440 LQFHINEMETQLNLLSKETQEITKRCAEEAKK 471 (576)
Q Consensus 440 Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~k 471 (576)
.+..+.+.+.++...+.+..+-......+++.
T Consensus 69 a~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~ 100 (174)
T PRK07352 69 AAQALAEAQQKLAQAQQEAERIRADAKARAEA 100 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443333333333
No 456
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=48.85 E-value=2.5e+02 Score=26.97 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008135 411 EKLEELISLQQQSSEMAAKIEGKRKR 436 (576)
Q Consensus 411 ~~~~e~~~Lq~~l~~l~~~ieek~~~ 436 (576)
....++..++..+.+-...++.+...
T Consensus 75 ~~~~el~~~E~rl~~rE~~L~~~~~~ 100 (201)
T PF12072_consen 75 ERRKELQRLEKRLQQREEQLDRRLEQ 100 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444443333333333333
No 457
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=48.76 E-value=5.7e+02 Score=31.01 Aligned_cols=73 Identities=19% Similarity=0.303 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 283 EEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAM 362 (576)
Q Consensus 283 ~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~ 362 (576)
.++..+.++++.|+..|..=-++ |.+++....+.|-.++ .+++.++|..--...+.+.+.+..+|.+-
T Consensus 1070 eQIq~~KQ~LesLQRAV~TPVvt--d~eKvr~rYe~LI~~i----------TKrIt~LEk~k~~~l~~ikK~ia~lnnlq 1137 (1439)
T PF12252_consen 1070 EQIQSVKQDLESLQRAVVTPVVT--DAEKVRVRYETLITDI----------TKRITDLEKAKLDNLDSIKKAIANLNNLQ 1137 (1439)
T ss_pred HHHHHHHHHHHHHHHhhcccccc--cHHHHHHHHHHHHHHH----------HHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 34445555555665444433333 4444444444442222 24444444333334455556666666555
Q ss_pred HHccC
Q 008135 363 KRLKL 367 (576)
Q Consensus 363 ~kl~l 367 (576)
.-+++
T Consensus 1138 qElkl 1142 (1439)
T PF12252_consen 1138 QELKL 1142 (1439)
T ss_pred HHHHH
Confidence 54444
No 458
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=48.16 E-value=3.3e+02 Score=28.65 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008135 286 KRICEENEEFKKRVKLQTINARDVERMRRELQAVE 320 (576)
Q Consensus 286 ~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~ 320 (576)
+..+.+.++.+.-....-+|..+.+....+....+
T Consensus 123 ~~a~~~~~r~~~L~~~g~is~~~~~~~~~~~~~~~ 157 (370)
T PRK11578 123 KLARVTLSRQQRLAKTQAVSQQDLDTAATELAVKQ 157 (370)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 33333344433333444566666666544443333
No 459
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=47.90 E-value=4.7e+02 Score=29.73 Aligned_cols=214 Identities=14% Similarity=0.070 Sum_probs=0.0
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHHhhhhhhCCcc-----cccchHHHHHHHHHHHHHHcCCCCCchhhhHHHHHHHHH
Q 008135 133 LRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKA-----FVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEK 207 (576)
Q Consensus 133 l~~~g~~h~wp~~l~~L~WLv~l~~~~~~~~~~~~~-----~~~~~~~~~y~~~~Y~~fl~g~d~~~~~l~~~~~~kl~~ 207 (576)
+..||++..-| ...||-+-|+.-..+-+...... ...+..-..|+..=+..-+..-+-.+-.-..+|.++|..
T Consensus 38 ~~gpgs~~m~p--~~~lhs~edlr~taemmet~~e~~~LlsqiP~~~taa~i~eWles~~p~~~~~s~~~~~~yQerLaR 115 (861)
T KOG1899|consen 38 MRGPGSLSMKP--QRKLHSLEDLRYTAEMMETGVETLGLLSQIPDPQTAARIAEWLESPSPSMSTVSCPEYPEYQERLAR 115 (861)
T ss_pred ccCCCCccccc--hhhhhhHHHHHHHHHHHhcccccccccccCCCchHHHHHHHHHhccCCCCCCccCCcchHHHHHHHH
Q ss_pred ----------HHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 208 ----------EKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKERE 277 (576)
Q Consensus 208 ----------~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~E 277 (576)
++..+.+++.+-.+.|.+||. -++..+.+..+-+.-++.----+..++.++-.+-..+++++-.
T Consensus 116 Le~dkesL~LQvsvLteqVeaQgEKIrDLE~------cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLk 189 (861)
T KOG1899|consen 116 LEMDKESLQLQVSVLTEQVEAQGEKIRDLET------CIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLK 189 (861)
T ss_pred HhcchhhheehHHHHHHHHHHhhhhHHHHHH------HHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 008135 278 IGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSM 356 (576)
Q Consensus 278 le~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~ 356 (576)
+.+.+.+..+-+.....-+..++.-+ .--+..+-.|+-+-...+......+..|+++..+.+.+..+....+-..+.
T Consensus 190 ltalEkeq~e~E~K~R~se~l~qevn--~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~ 266 (861)
T KOG1899|consen 190 LTALEKEQNETEKKLRLSENLMQEVN--QSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLM 266 (861)
T ss_pred HHHHHHHhhhHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHh
No 460
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=47.82 E-value=2.7e+02 Score=26.98 Aligned_cols=13 Identities=15% Similarity=0.388 Sum_probs=5.1
Q ss_pred hchHHHHHHHHHH
Q 008135 392 STLKPALESFADD 404 (576)
Q Consensus 392 ~~ik~~L~~l~~e 404 (576)
+.++..+..+.+.
T Consensus 8 ~~~~a~~~~~ld~ 20 (221)
T PF04012_consen 8 TLVKANINELLDK 20 (221)
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444333
No 461
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=47.60 E-value=2e+02 Score=25.52 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008135 418 SLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDI 476 (576)
Q Consensus 418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eel 476 (576)
...+.+..+....+..++++..+..+++.+..++..+++++-....=...+++.|--.|
T Consensus 43 ~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeLV~~I 101 (126)
T PF07028_consen 43 KLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLERRPLTKEDVEELVLRI 101 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 44555666666777777788888888888877777777765443332333444444333
No 462
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.54 E-value=4.4e+02 Score=29.39 Aligned_cols=51 Identities=14% Similarity=0.013 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 406 KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSK 456 (576)
Q Consensus 406 ~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~ 456 (576)
++.+..+...+...-+++...++.++..+.+..-|..++++....-+.+.+
T Consensus 587 qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~ 637 (741)
T KOG4460|consen 587 QRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMN 637 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333333333333333333334444444444444444444444444444443
No 463
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=47.32 E-value=2.4e+02 Score=26.33 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008135 444 INEMETQLNLLSKETQE 460 (576)
Q Consensus 444 l~~l~~ql~~lk~e~ee 460 (576)
..+.+.++...+.+...
T Consensus 72 ~~e~e~~l~~a~~ea~~ 88 (173)
T PRK13453 72 EEENKQKLKETQEEVQK 88 (173)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444443333
No 464
>PRK14144 heat shock protein GrpE; Provisional
Probab=47.31 E-value=2.7e+02 Score=26.89 Aligned_cols=54 Identities=13% Similarity=0.200 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccccc
Q 008135 510 EEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSIAF 567 (576)
Q Consensus 510 eek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~ 567 (576)
.....+...|..++|.++......... -...+.+-+.-|.+.|..+| +.+|+..
T Consensus 92 ~a~~~~~~~LLpV~DnLerAl~~~~~~---~~~~i~~Gv~mi~k~l~~~L-~k~GV~~ 145 (199)
T PRK14144 92 YGVEKLISALLPVVDSLEQALQLADKN---SDPSMHEGLELTMKLFLDAL-QKFDVEQ 145 (199)
T ss_pred HHHHHHHHHHhhHHhHHHHHHHccccc---chhHHHHHHHHHHHHHHHHH-HHCCCEE
Confidence 345666677777777776664432211 12347788888888888888 5568833
No 465
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=46.81 E-value=2.8e+02 Score=26.80 Aligned_cols=10 Identities=0% Similarity=-0.154 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 008135 514 IRALDLFALV 523 (576)
Q Consensus 514 ~l~~el~~l~ 523 (576)
.|..++..+.
T Consensus 167 sL~~e~~~~~ 176 (201)
T PF11172_consen 167 SLQGEFSSIE 176 (201)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 466
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=46.78 E-value=2.2e+02 Score=25.55 Aligned_cols=58 Identities=34% Similarity=0.312 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFK 296 (576)
Q Consensus 239 l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~ 296 (576)
+......++.-+.|.+.+++........|+..-.++..+++....++..++.++...+
T Consensus 51 ~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak 108 (139)
T PF05615_consen 51 LLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAK 108 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555566677777777777777777777777777776666555555555544443
No 467
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=46.69 E-value=97 Score=26.63 Aligned_cols=25 Identities=4% Similarity=0.276 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 276 REIGKKVEEHKRICEENEEFKKRVK 300 (576)
Q Consensus 276 ~Ele~~~~e~~~l~~e~~eL~~~l~ 300 (576)
.++...+.++..+++++..|..+|.
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444455555544433
No 468
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=46.55 E-value=3.5e+02 Score=27.94 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=11.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 334 ESKTWDLDSKLGRKFKELEALSMECNQA 361 (576)
Q Consensus 334 ~~~~~~~e~~l~~~~e~le~l~~~yn~~ 361 (576)
+++.|+....+...+. ......+||.+
T Consensus 176 r~~~~e~~~~~~sl~~-~~g~~~ef~~l 202 (301)
T PF06120_consen 176 RQKAAEQAGAYNSLKG-MNGAHAEFNRL 202 (301)
T ss_pred HHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence 3445555543332222 33344456655
No 469
>PRK14148 heat shock protein GrpE; Provisional
Probab=46.47 E-value=2.8e+02 Score=26.74 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccc
Q 008135 511 EIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSI 565 (576)
Q Consensus 511 ek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~~~ 565 (576)
....+..+|..++|.++......... +--..+.+-+.-|.+.|..+|. ++|+
T Consensus 88 a~~~~~~~LLpV~DnlerAl~~~~~~--~~~~~l~~Gv~mi~k~l~~vL~-k~Gv 139 (195)
T PRK14148 88 GIEKFAKELLPVIDSIEQALKHEVKL--EEAIAMKEGIELTAKMLVDILK-KNGV 139 (195)
T ss_pred HHHHHHHHHhhHHhHHHHHHhccccc--hhHHHHHHHHHHHHHHHHHHHH-HCCC
Confidence 44566677777777776664432211 1113477778888888888884 6777
No 470
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=46.46 E-value=2.1e+02 Score=28.46 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHhcccc
Q 008135 510 EEIQIRALDLFALVDSVSKYKERMESKISKMNK----GISETALTVSEAYKNSLP 560 (576)
Q Consensus 510 eek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~----~~~~~~~~i~~~f~~~~~ 560 (576)
+....+..+|....+.+.+.-+..+..|..... .+-..|.+.+..|-..|.
T Consensus 252 eke~q~raeL~acEEkl~kmeE~Qa~~l~~aR~~errkvraqf~dfsskyg~f~~ 306 (311)
T PF04642_consen 252 EKENQARAELNACEEKLKKMEEEQAEMLRAARTEERRKVRAQFHDFSSKYGNFFK 306 (311)
T ss_pred hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhh
Confidence 444455555666666665555555555544332 266666776666665554
No 471
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=46.16 E-value=3.4e+02 Score=27.60 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008135 444 INEMETQLNLLSKETQEI 461 (576)
Q Consensus 444 l~~l~~ql~~lk~e~eee 461 (576)
|.+|..|+...++.|-++
T Consensus 91 I~eLksQL~RMrEDWIEE 108 (305)
T PF15290_consen 91 IDELKSQLARMREDWIEE 108 (305)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444445554433
No 472
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=46.12 E-value=2.5e+02 Score=26.02 Aligned_cols=210 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKK 281 (576)
Q Consensus 202 ~~kl~~~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~ 281 (576)
+.+|...+..+..=+...+..+...+-.. .+..++.+.++...+..|+......++.+...-..+-.... ......
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~-d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~---~~~~~i 77 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGD-DLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGH---PDAEEI 77 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCcccCC-CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCC---CChHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 282 VEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQA 361 (576)
Q Consensus 282 ~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~ 361 (576)
...+..+...-..|...+....-..++.-........+.. +..-+...+..+......- ..+.++.++..+..+
T Consensus 78 ~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~----l~~wl~~~e~~l~~~~~~~--~~~~~~~~l~~~~~~ 151 (213)
T cd00176 78 QERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADD----LEQWLEEKEAALASEDLGK--DLESVEELLKKHKEL 151 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCcccCC--CHHHHHHHHHHHHHH
Q ss_pred HHHccCCcceeEeeCCCCCCCccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 362 MKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQ 421 (576)
Q Consensus 362 ~~kl~l~~d~~~~ln~~~~~~~ei~~~~~k~~ik~~L~~l~~ei~~~~~~~~~e~~~Lq~ 421 (576)
...+.-....--.++..+..........-...+...+..+............+....|+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~ 211 (213)
T cd00176 152 EEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEE 211 (213)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 473
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=46.07 E-value=84 Score=27.59 Aligned_cols=95 Identities=17% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHH-------------------------
Q 008135 203 EKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAII------------------------- 257 (576)
Q Consensus 203 ~kl~~~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i------------------------- 257 (576)
..+...+..+.+++..|...+.+|..... .+.....-...+..+ ....-++
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~---e~~~~~~~L~~l~~~-~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g 77 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIA---ELETAIETLEDLKGA-EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSG 77 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcccc-CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCC
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 258 ----GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (576)
Q Consensus 258 ----~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~ 301 (576)
..++..++-++.++..+.+.++.....+..+..+...+...++.
T Consensus 78 ~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~ 125 (126)
T TIGR00293 78 YYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ 125 (126)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 474
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=46.03 E-value=4e+02 Score=28.47 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008135 252 KFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQT 303 (576)
Q Consensus 252 K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~ 303 (576)
++...+.....-..+++..+..+..|+. .|...+..|...++...
T Consensus 47 ~L~~Ri~di~~wk~eL~~~l~~~~~Ei~-------~L~~~K~~le~aL~~~~ 91 (384)
T PF03148_consen 47 RLRQRIRDIRFWKNELERELEELDEEID-------LLEEEKRRLEKALEALR 91 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhc
Confidence 4455555555555555555555555544 44444555555554444
No 475
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=45.66 E-value=4.8e+02 Score=29.26 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHH
Q 008135 395 KPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITK---RCAEEAKK 471 (576)
Q Consensus 395 k~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~---~~~~Ei~k 471 (576)
|.+|+-..+++-...-++.-+..-|+.++......-...+++|..|+..+..+.++....+++.-.... -.+..-+-
T Consensus 317 KNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRF 396 (832)
T KOG2077|consen 317 KNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRF 396 (832)
T ss_pred hhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhh
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 472 MEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQI 514 (576)
Q Consensus 472 l~eele~~~~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~ 514 (576)
.+-+|.. +-|.+ ++|++--..+|++.+=++--|..
T Consensus 397 TRvEMaR--VLMeR------NqYKErLMELqEavrWTEMiRAs 431 (832)
T KOG2077|consen 397 TRVEMAR--VLMER------NQYKERLMELQEAVRWTEMIRAS 431 (832)
T ss_pred HHHHHHH--HHHHH------hHHHHHHHHHHHHHhHHHHHHHh
No 476
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=45.56 E-value=2.9e+02 Score=26.77 Aligned_cols=130 Identities=18% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 201 FIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGK 280 (576)
Q Consensus 201 ~~~kl~~~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~ 280 (576)
+..+|....+++...+......+.++.. -+.+++++.-|..++.........+...+..-..
T Consensus 3 ~~~~~~~~~d~lq~~i~~as~~lNd~TG------------------Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ 64 (207)
T PF05546_consen 3 LSKKLSFYMDSLQETIFTASQALNDVTG------------------YSEIEKLKKSIEELEDELEAARQEVREAKAAYDD 64 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 008135 281 KVEEHKRICEENEEFKKRVKL-QTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKF 348 (576)
Q Consensus 281 ~~~e~~~l~~e~~eL~~~l~~-Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~ 348 (576)
........+.|+.+|-.+-.. -+-..+-.-.+.+.=..+.+...++...+.+.+.........+.+.+
T Consensus 65 ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~~~~L~~~I 133 (207)
T PF05546_consen 65 AIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVEEAFDDLMRAI 133 (207)
T ss_pred HHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=45.45 E-value=2.6e+02 Score=26.10 Aligned_cols=120 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 008135 416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLK 495 (576)
Q Consensus 416 ~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~ 495 (576)
..-+++.-+.+...+.+.+......+..+.+.+.++...+.+..+-......+++...+++-. +--.
T Consensus 42 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~-------------~A~~ 108 (173)
T PRK13460 42 LKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLE-------------ETNN 108 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHH-HHHHH
Q 008135 496 ASESKFQEAIRQCEEEIQIRALDLFALVDSV--SKYKERMESKISKMNKG-ISETA 548 (576)
Q Consensus 496 ~~~~~~ee~~~e~eeek~~l~~el~~l~~~i--~k~K~~i~~~i~~~~~~-~~~~~ 548 (576)
+.+...+.+..+++.++.....++..-+..+ .....-+...++.-..+ +.+.+
T Consensus 109 ea~~~~~~a~~~ie~e~~~a~~el~~ei~~lA~~~a~kil~~~l~~~~~~~lid~~ 164 (173)
T PRK13460 109 EVKAQKDQAVKEIELAKGKALSQLQNQIVEMTITIASKVLEKQLKKEDYKAFIETE 164 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
No 478
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=45.36 E-value=2.2e+02 Score=25.17 Aligned_cols=85 Identities=12% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-------------------HHHHHHHHHHHHHHHH
Q 008135 264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARD-------------------VERMRRELQAVERDIA 324 (576)
Q Consensus 264 ~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~d-------------------i~r~~~Er~~L~~~l~ 324 (576)
....-.+...++.++.....+...++.++.+....+..-+.-.+| ++.+....+.|+..+.
T Consensus 8 ~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~ 87 (119)
T COG1382 8 VQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIK 87 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Q 008135 325 DAENARNEWESKTWDLDSKLGRKF 348 (576)
Q Consensus 325 ~~e~~~~~l~~~~~~~e~~l~~~~ 348 (576)
.++++-..++++..++...+-..+
T Consensus 88 tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 88 TLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
No 479
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=45.29 E-value=2.8e+02 Score=26.35 Aligned_cols=117 Identities=19% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhCCcc-cccchHHHHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008135 147 ALIHWLVQIASYNYHLTTNSKA-FVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSE 225 (576)
Q Consensus 147 ~~L~WLv~l~~~~~~~~~~~~~-~~~~~~~~~y~~~~Y~~fl~g~d~~~~~l~~~~~~kl~~~~~~~~~~~~~L~~~~~~ 225 (576)
.|-.|+-.+-+-.-.+..+... ...++.++.-+.... +.+=.+.|...+..+...+...+..+..
T Consensus 63 ha~~w~d~~~P~ii~~~~~I~~Y~~~f~syY~~L~~~i--------------d~~~~~~~~~~i~~L~~~i~~~q~~~~~ 128 (184)
T PF05791_consen 63 HAKEWLDTIKPQIIDLNQDIINYNTTFQSYYDTLVEAI--------------DQKDKEDLKEIIEDLQDQIQKNQDKVQA 128 (184)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHT-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------CcccHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 226 MEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHK 286 (576)
Q Consensus 226 le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~ 286 (576)
-+..|..-...|..|...|..-+..+......-...|..++.+++....+++
T Consensus 129 ---------~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 129 ---------LINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
No 480
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=45.05 E-value=68 Score=37.64 Aligned_cols=236 Identities=17% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008135 242 EKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVER 321 (576)
Q Consensus 242 ~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~ 321 (576)
+..++..+...|+.-...--.+..++++++..++.++......+........-.... +++++..+..++..
T Consensus 11 qF~Dln~~~~~fqr~f~~ev~r~de~erkL~~le~~I~k~~~~~~~~~~~~~~~~~~---------~i~~le~~l~~le~ 81 (759)
T PF01496_consen 11 QFRDLNEDVSAFQRKFVNEVRRCDEMERKLRFLEEEIKKLKIPLPEKNDKPDAPKPK---------EIDELEEELEELEE 81 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEECccchhHHHHHhhhccccHHHHHHHHHHHHHHHHHhcCcccccccccccchhh---------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHccCCcceeEeeCCCCCCC---ccccchhhhhchHHH
Q 008135 322 DIADAENARNEWESKTWDLDSKLGRKFKELEALSME-CNQAMKRLKLATEIQYSLNSNGSTP---SEVMGVDYKSTLKPA 397 (576)
Q Consensus 322 ~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~-yn~~~~kl~l~~d~~~~ln~~~~~~---~ei~~~~~k~~ik~~ 397 (576)
.+.+.....+.+.++..++........+....+... ++.+..--.+..++...-+...... .-.++.+....++..
T Consensus 82 ~l~e~~~~~e~L~~~~~~L~E~~~~L~~~~~~l~~~~~~~l~~~~~l~~~~~~l~~~~~~~~~f~~G~I~~~~~~~f~~~ 161 (759)
T PF01496_consen 82 ELRELNENLEKLEEELNELEEEKNVLEEEIEFLEELKLEELEPWKNLDIDLEELESSKFLNLGFIAGVIPREKIESFERI 161 (759)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchhhhccccceeeeEEEEEEehhhHHHHHHH
Q ss_pred HHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008135 398 LESFADD------------------------------VKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEM 447 (576)
Q Consensus 398 L~~l~~e------------------------------i~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l 447 (576)
|.+.... ......+..+-+....-..-.+-..-..-...+..++.+++++
T Consensus 162 l~r~~~~N~fi~~~~Ie~~~~d~~e~~~k~v~vv~~~~~~~~~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l 241 (759)
T PF01496_consen 162 LWRATRGNIFIRFSEIEEILEDPKEEVEKEVFVVFFSGKELEEKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEEL 241 (759)
T ss_dssp HHHHHTT-----S------EEEE-EE-SSSEEEEEEEEGGGHHHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHH
T ss_pred HHHhccCCeEEEEEeeecccccccceeeeeeEEEEEEchhhHHHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHH
Q 008135 448 ETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMV 486 (576)
Q Consensus 448 ~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~ 486 (576)
+..++..++++......+..++..+...+..++.-...+
T Consensus 242 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 280 (759)
T PF01496_consen 242 EKELEELEEELKKLLEKYAEELEAWYEYLRKEKEIYEAL 280 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=45.04 E-value=17 Score=38.85 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=0.0
Q ss_pred CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008135 9 PTESA-LQPTPDLYGGNRFGGSRDSDASFASSRPSSIG 45 (576)
Q Consensus 9 ~~~~~-~~~~~~~~~~~~~~~~r~s~~s~~~sr~s~~g 45 (576)
++.++ +|||||+|-...+|. +|.++-++.-.+++|
T Consensus 230 ~s~~g~PPPPPP~PPp~~~~~--~~~~~~~~~~k~~~~ 265 (480)
T KOG2675|consen 230 ASAPGAPPPPPPAPPPAPFFA--DSNPPSSDANKGGRG 265 (480)
T ss_pred ccCCCCCCCCCCCCCCccccc--ccCCCCcccccccHH
No 482
>PRK14151 heat shock protein GrpE; Provisional
Probab=44.66 E-value=2.8e+02 Score=26.24 Aligned_cols=95 Identities=16% Similarity=0.177 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008135 464 RCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKG 543 (576)
Q Consensus 464 ~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~ 543 (576)
...+++..++.++++++....++..+.++.-+.++...+.+. .-....+..+|..++|.++.........-+.. ..
T Consensus 24 ~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~---~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~-~~ 99 (176)
T PRK14151 24 DLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAH---KFALEKFAGDLLPVVDSLERGLELSSADDEAI-KP 99 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHhHHHHHHhcccccchhH-HH
Q ss_pred HHHHHHHHHHHHhcccccc
Q 008135 544 ISETALTVSEAYKNSLPAQ 562 (576)
Q Consensus 544 ~~~~~~~i~~~f~~~~~~~ 562 (576)
+.+-+.-|-+.|..+|.++
T Consensus 100 ~~~Gv~mi~k~l~~~L~k~ 118 (176)
T PRK14151 100 MREGVELTLKMFQDTLKRY 118 (176)
T ss_pred HHHHHHHHHHHHHHHHHHC
No 483
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=44.64 E-value=2.7e+02 Score=26.10 Aligned_cols=99 Identities=18% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh-----cCCHHHHHHHH
Q 008135 241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREI--GKKVEEHKRICEENEEFKKRVKLQ-----TINARDVERMR 313 (576)
Q Consensus 241 ~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~El--e~~~~e~~~l~~e~~eL~~~l~~Q-----~~s~~di~r~~ 313 (576)
++...|..++.++++-+..++....-++..|..|..-| +....+++.|..+......+|.+- -++++|.+...
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~ 158 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVY 158 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008135 314 RELQAVERDIADAENARNEWESKTWD 339 (576)
Q Consensus 314 ~Er~~L~~~l~~~e~~~~~l~~~~~~ 339 (576)
++++.--+.-.+...--.++-.++.+
T Consensus 159 ~~y~~~~~~wrk~krmf~ei~d~~~e 184 (201)
T KOG4603|consen 159 REYQKYCKEWRKRKRMFREIIDKLLE 184 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
No 484
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=44.63 E-value=2.1e+02 Score=28.99 Aligned_cols=73 Identities=10% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008135 265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT 337 (576)
Q Consensus 265 ~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~ 337 (576)
..+...+...+.++.....++..++.+.++++.-......|..+++....+...++..+..++.++..+....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 132 (322)
T TIGR01730 60 DDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNL 132 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 485
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=44.58 E-value=59 Score=34.62 Aligned_cols=98 Identities=19% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVE-RMRRELQAVERDIADAENARNEWES 335 (576)
Q Consensus 257 i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~-r~~~Er~~L~~~l~~~e~~~~~l~~ 335 (576)
+..+........+.+.++...+.....+++.+.....+....+....-....+. .++...+.++..+..++..+..+.+
T Consensus 86 ~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~ 165 (370)
T PF02994_consen 86 LEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQ 165 (370)
T ss_dssp --------------------------------H-------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 008135 336 KTWDLDSKLGRKFKELEAL 354 (576)
Q Consensus 336 ~~~~~e~~l~~~~e~le~l 354 (576)
.....+..+....+.+..+
T Consensus 166 ~~~~~~k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 166 AIKELEKRIKKLEDKLDDL 184 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
No 486
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=44.58 E-value=3.3e+02 Score=27.06 Aligned_cols=218 Identities=10% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccee
Q 008135 293 EEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQ 372 (576)
Q Consensus 293 ~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~l~~d~~ 372 (576)
..|..++..-....+++...-+||..++.... ..+..|-.+...-..++......+..+..+-+.++
T Consensus 8 ~~l~~r~~~g~~~~~el~~f~kERA~IE~~Ya---K~L~kLskk~~~g~~E~GTl~~sw~~~~~E~e~~a---------- 74 (240)
T cd07672 8 DCIIQHLNDGRKNCKEFEDFLKERASIEEKYG---KELLNLSKKKPCGQTEINTLKRSLDVFKQQIDNVG---------- 74 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHH----------
Q ss_pred EeeCCCCCCCccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008135 373 YSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLN 452 (576)
Q Consensus 373 ~~ln~~~~~~~ei~~~~~k~~ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~ 452 (576)
..+..+...+...++ .|..+.+........+.....+++......-..++..+......=.+...+...+.
T Consensus 75 --------~~H~~la~~L~~~~~-~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~ 145 (240)
T cd07672 75 --------QSHIQLAQTLRDEAK-KMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVN 145 (240)
T ss_pred --------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 453 LLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKER 532 (576)
Q Consensus 453 ~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~ 532 (576)
......... +++++...++... ..+...+..|+.....+++-+.....++. ..-..|
T Consensus 146 ~~~~~~~~k------e~~K~~~Kl~K~~-----------~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~---~~c~~f--- 202 (240)
T cd07672 146 RNANLVNVK------QQEKLFAKLAQSK-----------QNAEDADRLYMQNISVLDKIREDWQKEHV---KACEFF--- 202 (240)
T ss_pred hccCCCCHH------HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH---
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhcccc
Q 008135 533 MESKISKMNKGISETALTVSEAYKNSLP 560 (576)
Q Consensus 533 i~~~i~~~~~~~~~~~~~i~~~f~~~~~ 560 (576)
+++.++=+.-+..+.=.|-++++
T Consensus 203 -----q~lEeeRi~f~k~~lw~~~n~~s 225 (240)
T cd07672 203 -----EKQECERINFFRNAVWTHVNQLS 225 (240)
T ss_pred -----HHHHHHHHHHHHHHHHHHHhHHH
No 487
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=44.51 E-value=2.7e+02 Score=25.94 Aligned_cols=72 Identities=18% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 219 LKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICE 290 (576)
Q Consensus 219 L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~ 290 (576)
|..-|.=|+.+.........++.+...|+..+.+++.-+..|+.....+.+++..++++-++...-+.....
T Consensus 82 l~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 82 LQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF14282 FlxA: FlxA-like protein
Probab=44.41 E-value=91 Score=26.81 Aligned_cols=47 Identities=9% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 255 AIIGELNMRKEKMEKLVEEKER----EIGKKVEEHKRICEENEEFKKRVKL 301 (576)
Q Consensus 255 ~~i~~l~~~~~~~e~~l~~l~~----Ele~~~~e~~~l~~e~~eL~~~l~~ 301 (576)
..|..|+..+..+...|..+.. .-+.+...++.|+.++..|+.+|..
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~q 69 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQ 69 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PRK15396 murein lipoprotein; Provisional
Probab=44.37 E-value=1.5e+02 Score=24.17 Aligned_cols=46 Identities=11% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135 257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ 302 (576)
Q Consensus 257 i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q 302 (576)
++++.+..+.+..++..+..+...........+.|-.+-..+|+++
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=44.37 E-value=2.2e+02 Score=24.92 Aligned_cols=117 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcceeEeeCCCCCCCccccchh-------
Q 008135 317 QAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVD------- 389 (576)
Q Consensus 317 ~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~l~~d~~~~ln~~~~~~~ei~~~~------- 389 (576)
+.+...+..+...++.+......+.. .+.++...+...+.+... .+.+.-+.+....+-+..+...+
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~----~i~e~~~~~~~L~~l~~~--~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG 75 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRA----LIAELETAIETLEDLKGA--EGKETLVPVGAGSFVKAKVKDTDKVLVSIG 75 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcccc--CCCeEEEEcCCCeEEEEEeCCCCEEEEEcC
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008135 390 YKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDA 439 (576)
Q Consensus 390 ~k~~ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~ 439 (576)
.-=-++..+.+-.+-+.+++..+...+..+++.+..+...++.....+.+
T Consensus 76 ~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~ 125 (126)
T TIGR00293 76 SGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ 125 (126)
T ss_pred CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 491
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.31 E-value=4.7e+02 Score=28.78 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---H
Q 008135 265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDL---D 341 (576)
Q Consensus 265 ~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~---e 341 (576)
+.+.+++.--.+++..-..-++.+..++.+|+ ..+--++.-|++.++....|+..|=.+-.+..-++.+.+-+ |
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq---k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~E 413 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQ---KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDE 413 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC------------CcceeEeeCCCCCCCccccchhhhhchHHHHHHHHHHHHHHH
Q 008135 342 SKLGRKFKELEALSMECNQAMKRLKL------------ATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSS 409 (576)
Q Consensus 342 ~~l~~~~e~le~l~~~yn~~~~kl~l------------~~d~~~~ln~~~~~~~ei~~~~~k~~ik~~L~~l~~ei~~~~ 409 (576)
.+|..+++.|-..++.=|.+..+|.. ...-.+.++.. ...+.+.++.... +-..-+...+
T Consensus 414 E~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~r~q~~~~~~~~~~~iD~~-------~~~e~~e~lt~~~-e~l~~Lv~Il 485 (508)
T KOG3091|consen 414 EELRAKLDTLLAQLNAPNQLKARLDELYEILRMQNSQLKLQESYWIDFD-------KLIEMKEHLTQEQ-EALTKLVNIL 485 (508)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhcchhccccceeechh-------hhHHHHHHHHHHH-HHHHHHHHHH
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHH
Q 008135 410 VEKLEEL-ISLQQQSSEMAAKIE 431 (576)
Q Consensus 410 ~~~~~e~-~~Lq~~l~~l~~~ie 431 (576)
....+.+ ..|.+.+......++
T Consensus 486 k~d~edi~~~l~E~~~~~~~~~~ 508 (508)
T KOG3091|consen 486 KGDQEDIKHQLIEDLEICRKSLE 508 (508)
T ss_pred HhHHHHHHHHHHhhHHHHhhhcC
No 492
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=44.27 E-value=1.1e+02 Score=25.24 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008135 257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTI 304 (576)
Q Consensus 257 i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~ 304 (576)
++++.+....+..++..+..+....+......+.|-.+-..+|++|.|
T Consensus 26 vdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~~ 73 (85)
T PRK09973 26 VNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQDY 73 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
No 493
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=44.26 E-value=4.8e+02 Score=28.82 Aligned_cols=159 Identities=8% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008135 396 PALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEED 475 (576)
Q Consensus 396 ~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~ee 475 (576)
.....+...+......+. ....+..++..+...+...+..+..+...+..++..++..++..++.......--++|..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~ 114 (475)
T PRK10361 36 AEREEMVAELSAAKQQIT-QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQ 114 (475)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHH
Q 008135 476 IQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKG---ISETALTVS 552 (576)
Q Consensus 476 le~~~~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~---~~~~~~~i~ 552 (576)
-+.+.+.+ ++..........+..++.+..=+.+........+..+-..=.+....+...|..+..- +......+.
T Consensus 115 F~~LA~~i--le~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt 192 (475)
T PRK10361 115 FENLANRI--FEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLT 192 (475)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhc
Q 008135 553 EAYKN 557 (576)
Q Consensus 553 ~~f~~ 557 (576)
..-|.
T Consensus 193 ~ALkg 197 (475)
T PRK10361 193 RALKG 197 (475)
T ss_pred HHHcC
No 494
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=44.24 E-value=4.6e+02 Score=28.61 Aligned_cols=169 Identities=11% Similarity=0.075 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHH-HHHHHHHHHH-----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcceeEee
Q 008135 302 QTINARDVERMRREL-QAVERDIADA-----ENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSL 375 (576)
Q Consensus 302 Q~~s~~di~r~~~Er-~~L~~~l~~~-----e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~l~~d~~~~l 375 (576)
+.|+|+|...+++.+ ..=++-++.+ +.++.-.++.+...+..+......|-..
T Consensus 210 ~AF~PedA~~ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~f--------------------- 268 (434)
T PRK15178 210 KARSAKQAEFFAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKI--------------------- 268 (434)
T ss_pred EecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Q ss_pred CCCCCCCccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 376 NSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLS 455 (576)
Q Consensus 376 n~~~~~~~ei~~~~~k~~ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk 455 (576)
-+-.+.|-|.-. ..-+...+..+..++..++-++..+...+..-.-++..|+.++..|+.+++..+
T Consensus 269 ------------Rn~~gvlDP~~~--a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er 334 (434)
T PRK15178 269 ------------QHIQKDIDPKET--ITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQR 334 (434)
T ss_pred ------------HHhCCCcChHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-----HHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 456 KETQE-----ITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRA 516 (576)
Q Consensus 456 ~e~ee-----e~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~ 516 (576)
..+.. -.....++.+.|.-+.+-.+ ..|...-..++.+..+-+....-|.
T Consensus 335 ~kl~~~~g~~~la~~laeYe~L~le~efAe-----------~~y~sAlaaLE~AR~EA~RQ~~YL~ 389 (434)
T PRK15178 335 NRLSNKLGSQGSSESLSLFEDLRLQSEIAK-----------ARWESALQTLQQGKLQALRERQYLL 389 (434)
T ss_pred HHhhcCCCCCchhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhhhhee
No 495
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=44.19 E-value=2.1e+02 Score=24.62 Aligned_cols=106 Identities=17% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcceeEeeCCCCCCCccc
Q 008135 306 ARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEV 385 (576)
Q Consensus 306 ~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~l~~d~~~~ln~~~~~~~ei 385 (576)
+..++......+.++..+..+..++..++....+.+. .+++|+.+ ++.+.-+.-+
T Consensus 2 ~~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~----v~~eL~~l---------------------~~d~~vyk~V 56 (110)
T TIGR02338 2 PPQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEK----ALEELERL---------------------PDDTPVYKSV 56 (110)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcC---------------------CCcchhHHHh
Q ss_pred cchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008135 386 MGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEM 447 (576)
Q Consensus 386 ~~~~~k~~ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l 447 (576)
-++=+.......+..|.+.+. .++..+..+...+..++..+..++.+++++
T Consensus 57 G~vlv~~~~~e~~~~l~~r~e-----------~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 57 GNLLVKTDKEEAIQELKEKKE-----------TLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred chhhheecHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=44.11 E-value=1.4e+02 Score=34.06 Aligned_cols=316 Identities=19% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 199 KGFIEKLEKEKENVSEYVEELKKKVSEMEG-AMTGPTEREKLEKEKCVLE--EDLNKFNAIIGELNMRKEKMEKLVEEKE 275 (576)
Q Consensus 199 ~~~~~kl~~~~~~~~~~~~~L~~~~~~le~-l~~~~~~l~~l~~~~~~L~--~D~~K~~~~i~~l~~~~~~~e~~l~~l~ 275 (576)
....+.+......-..++..|...+..|.. +-..+..+..-......+- ..+..|+..+..++..+..-...+..+.
T Consensus 90 ~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~ 169 (619)
T PF03999_consen 90 RPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELR 169 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 008135 276 REIGKKVEEHKRICEENEEFKKRVKL-------QTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKF 348 (576)
Q Consensus 276 ~Ele~~~~e~~~l~~e~~eL~~~l~~-------Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~ 348 (576)
.++...-.++.---. .......|.. .++|.+.++++..-+..|..........+..+..++..+...+.--.
T Consensus 170 ~~I~~l~~~L~~~~~-~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ 248 (619)
T PF03999_consen 170 EEIISLMEELGIDPE-RTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPE 248 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCcc-cccchhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q ss_pred HHHHHHHHHHHHHHHHccCCcceeEeeCCCCCCCccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 349 KELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAA 428 (576)
Q Consensus 349 e~le~l~~~yn~~~~kl~l~~d~~~~ln~~~~~~~ei~~~~~k~~ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~ 428 (576)
++.+..+...+.+. ...|..+..++.|.-.-+...+..+ +.....
T Consensus 249 ee~~~F~~~~~~ls--------------------------------~~~i~~l~~El~RL~~lK~~~lk~~---I~~~R~ 293 (619)
T PF03999_consen 249 EEREAFLEENSGLS--------------------------------LDTIEALEEELERLEELKKQNLKEF---IEKKRQ 293 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhccCcch--------------------------------HHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH--
Q 008135 429 KIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIR-- 506 (576)
Q Consensus 429 ~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~~~~~~~ee~~~-- 506 (576)
.|++.=..+---.........-|..... ++-...+..||.++++..+.-+.=+..+ +....+-....++..
T Consensus 294 ei~elWd~~~~s~eer~~F~~~~~d~~~--E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v-----~k~~~l~~~~~~Le~~~ 366 (619)
T PF03999_consen 294 EIEELWDKCHYSEEERQAFTPFYIDSYT--EELLELHEEEIERLKEEYESRKPILELV-----EKWESLWEEMEELEESS 366 (619)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhcccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHh
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHH-HHHHHHHHHHHHhc
Q 008135 507 --------------QCEEEIQIRALDLFALVDSVSKYKERMESKISK---MNKG-ISETALTVSEAYKN 557 (576)
Q Consensus 507 --------------e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~---~~~~-~~~~~~~i~~~f~~ 557 (576)
.=+..++.++++|=.+.+.+..--..-+..-.. .+.. |++.+......+..
T Consensus 367 ~D~~Rl~~RGg~LLkEEk~rk~i~k~lPkle~~L~~~l~~wE~e~g~pFlv~G~~~le~l~e~~~~~~~ 435 (619)
T PF03999_consen 367 KDPSRLNNRGGHLLKEEKERKRIQKKLPKLEEELKKKLEEWEEEHGKPFLVDGERYLEYLEEYEEQWER 435 (619)
T ss_dssp H-CCGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--EETTEEHHHHHH---HHHHH
T ss_pred cChhhhcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEcCccHHHHHHHHHHHHHh
No 497
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=44.03 E-value=3.5e+02 Score=27.14 Aligned_cols=116 Identities=22% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcceeEeeCC-------------------CCCCCccccchhh
Q 008135 330 RNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNS-------------------NGSTPSEVMGVDY 390 (576)
Q Consensus 330 ~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~l~~d~~~~ln~-------------------~~~~~~ei~~~~~ 390 (576)
++.+++++..++..+++..+-+.++=.+ +.++.-..+..-..++ ..+....+.+..-
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~D----L~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~ 76 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLEND----LAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGG 76 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCC
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008135 391 KSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMET 449 (576)
Q Consensus 391 k~~ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ 449 (576)
...|-|-+..=+|-...+..++.+++..+.+.+..+...++..+.++..|-++++-+.+
T Consensus 77 ~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 77 DSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 498
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=44.01 E-value=4.9e+02 Score=28.83 Aligned_cols=144 Identities=17% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 199 KGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREI 278 (576)
Q Consensus 199 ~~~~~kl~~~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~El 278 (576)
++..+-|...+..+.+++..|..+..-|-. ..-....+...+-+|+.|-..+.+. ++..+++.|+.+.+++
T Consensus 158 ~~~~EaL~ekLk~~~een~~lr~k~~llk~------Et~~~~~keq~~y~~~~KelrdtN~---q~~s~~eel~~kt~el 228 (596)
T KOG4360|consen 158 RELLEALQEKLKPLEEENTQLRSKAMLLKT------ETLTYEEKEQQLYGDCVKELRDTNT---QARSGQEELQSKTKEL 228 (596)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHh------hhcchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008135 279 GKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354 (576)
Q Consensus 279 e~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l 354 (576)
.....++..|..++..+++.+..--+-.++...+-.....-.+++. ....+++.+-.+....+...-++|..+
T Consensus 229 ~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~---aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 229 SRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLT---AELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
No 499
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=43.80 E-value=2.5e+02 Score=25.38 Aligned_cols=108 Identities=12% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHH-
Q 008135 426 MAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEA-HNLDMVEREAVEVLKASESKFQE- 503 (576)
Q Consensus 426 l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~-~~~~~~~~ea~~el~~~~~~~ee- 503 (576)
+...+++.+..+..--........+.+.++.+++........+.....++..... .....+..+|..++..-..+...
T Consensus 32 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~ 111 (141)
T PRK08476 32 LLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQ 111 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 504 AIRQCEEEIQIRALDLFALVDSVSKYKERM 533 (576)
Q Consensus 504 ~~~e~eeek~~l~~el~~l~~~i~k~K~~i 533 (576)
+..+.......+..++..+-+.|..-..+|
T Consensus 112 l~~e~~~~~~~l~~qv~~~~~~~~~~~~~~ 141 (141)
T PRK08476 112 LANQKQELKEQLLSQMPEFKEALNAKLSKI 141 (141)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhcC
No 500
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=43.32 E-value=70 Score=34.05 Aligned_cols=107 Identities=24% Similarity=0.307 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 196 NIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKE 275 (576)
Q Consensus 196 ~l~~~~~~kl~~~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~ 275 (576)
....++.++....+..+...++.|..++..+.. ........+......+..-...+..-++.++.++..++..+.++.
T Consensus 87 ~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk--~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~ 164 (370)
T PF02994_consen 87 EVLKEEKEKSIKELNELKKRIKELKKEIENIKK--NQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIE 164 (370)
T ss_dssp -------------------------------H---------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008135 276 REIGKKVEEHKRICEENEEFKKRVKLQTI 304 (576)
Q Consensus 276 ~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~ 304 (576)
..+......+..+...+.+|..+....++
T Consensus 165 ~~~~~~~k~i~~l~~kl~DlEnrsRRnNi 193 (370)
T PF02994_consen 165 QAIKELEKRIKKLEDKLDDLENRSRRNNI 193 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCce
Done!