Query 008135
Match_columns 576
No_of_seqs 268 out of 477
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 18:58:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ve7_A Kinetochore protein HEC 100.0 1.5E-42 5E-47 354.9 21.6 176 51-227 4-205 (315)
2 2igp_A Retinoblastoma-associat 100.0 1.2E-36 4.1E-41 265.8 13.5 109 51-159 6-119 (120)
3 1i84_S Smooth muscle myosin he 98.1 9.3E-06 3.2E-10 97.1 11.3 11 114-124 751-761 (1184)
4 3na7_A HP0958; flagellar bioge 97.6 0.037 1.3E-06 54.3 26.2 149 409-557 27-190 (256)
5 3na7_A HP0958; flagellar bioge 97.2 0.076 2.6E-06 52.1 22.9 92 247-339 31-122 (256)
6 3vkg_A Dynein heavy chain, cyt 96.6 2.8 9.7E-05 54.4 34.8 96 414-521 2014-2109(3245)
7 2v71_A Nuclear distribution pr 96.2 0.53 1.8E-05 43.4 18.9 56 309-364 90-145 (189)
8 3vkg_A Dynein heavy chain, cyt 95.8 3.7 0.00013 53.4 30.0 39 288-326 1915-1953(3245)
9 3o0z_A RHO-associated protein 95.7 0.67 2.3E-05 41.8 16.7 111 241-354 41-151 (168)
10 3o0z_A RHO-associated protein 95.6 1.3 4.4E-05 40.0 23.1 69 235-303 63-131 (168)
11 2dfs_A Myosin-5A; myosin-V, in 95.6 0.53 1.8E-05 55.4 20.2 22 435-456 1023-1044(1080)
12 2dfs_A Myosin-5A; myosin-V, in 95.5 0.32 1.1E-05 57.3 18.1 85 239-329 958-1045(1080)
13 3tnu_B Keratin, type II cytosk 94.1 1.3 4.5E-05 38.4 13.9 66 418-483 33-98 (129)
14 3u1c_A Tropomyosin alpha-1 cha 93.8 2.1 7.1E-05 35.5 13.9 60 236-295 4-63 (101)
15 3tnu_A Keratin, type I cytoske 93.5 1.4 4.7E-05 38.4 13.1 66 418-483 35-100 (131)
16 3u1c_A Tropomyosin alpha-1 cha 93.3 2.9 0.0001 34.5 15.0 53 246-298 42-94 (101)
17 2fxo_A Myosin heavy chain, car 93.3 3.7 0.00013 35.5 20.0 104 418-526 17-120 (129)
18 2v71_A Nuclear distribution pr 93.3 5 0.00017 36.9 22.6 10 469-478 90-99 (189)
19 3okq_A BUD site selection prot 93.0 3.5 0.00012 35.8 14.5 72 203-274 17-95 (141)
20 4gkw_A Spindle assembly abnorm 92.5 4.5 0.00015 34.4 20.5 109 254-362 45-153 (167)
21 3u59_A Tropomyosin beta chain; 92.5 4 0.00014 33.7 15.4 8 245-252 13-20 (101)
22 3oja_B Anopheles plasmodium-re 91.4 0.81 2.8E-05 50.1 10.9 16 540-555 570-585 (597)
23 3ol1_A Vimentin; structural ge 90.4 7.6 0.00026 33.0 14.0 16 418-433 38-53 (119)
24 3oja_A Leucine-rich immune mol 90.2 8.9 0.00031 40.6 17.5 51 312-362 433-483 (487)
25 3ghg_A Fibrinogen alpha chain; 90.1 7.8 0.00027 40.9 15.9 31 510-540 145-188 (562)
26 2v66_B Nuclear distribution pr 89.7 8.1 0.00028 32.3 15.2 54 310-363 38-91 (111)
27 2jee_A YIIU; FTSZ, septum, coi 89.3 6.7 0.00023 30.8 11.4 28 200-227 6-33 (81)
28 2fxo_A Myosin heavy chain, car 89.3 9.9 0.00034 32.7 18.2 37 243-279 22-58 (129)
29 1ic2_A Tropomyosin alpha chain 89.2 4.3 0.00015 32.0 10.5 37 239-275 4-40 (81)
30 3ghg_A Fibrinogen alpha chain; 88.6 6.8 0.00023 41.3 14.2 12 313-324 144-155 (562)
31 2lw1_A ABC transporter ATP-bin 88.6 3.6 0.00012 33.1 9.9 60 275-334 21-83 (89)
32 3tnu_B Keratin, type II cytosk 88.4 9.5 0.00032 32.8 13.2 64 415-478 37-100 (129)
33 3tnu_A Keratin, type I cytoske 87.3 8.9 0.0003 33.1 12.3 64 415-478 39-102 (131)
34 3s84_A Apolipoprotein A-IV; fo 87.1 23 0.0008 34.5 27.9 33 513-545 234-266 (273)
35 3hnw_A Uncharacterized protein 87.1 5.1 0.00017 35.1 10.6 42 249-290 69-110 (138)
36 2efr_A General control protein 87.1 16 0.00054 32.5 20.7 9 334-342 139-147 (155)
37 3nr7_A DNA-binding protein H-N 86.9 3.8 0.00013 32.8 8.8 47 264-310 33-79 (86)
38 3mq9_A Bone marrow stromal ant 86.2 26 0.0009 36.7 17.9 13 178-190 356-368 (471)
39 3mq7_A Bone marrow stromal ant 86.1 3.8 0.00013 34.2 8.5 44 261-304 70-113 (121)
40 3a7p_A Autophagy protein 16; c 85.6 9.8 0.00033 33.5 11.4 28 272-299 106-133 (152)
41 3hnw_A Uncharacterized protein 85.4 12 0.0004 32.8 12.0 59 240-298 74-132 (138)
42 2v4h_A NF-kappa-B essential mo 84.7 16 0.00054 30.3 12.5 16 309-324 85-100 (110)
43 3i00_A HIP-I, huntingtin-inter 84.0 6.7 0.00023 33.4 9.5 39 262-300 40-78 (120)
44 3ol1_A Vimentin; structural ge 84.0 19 0.00064 30.5 15.4 25 437-461 36-60 (119)
45 2jee_A YIIU; FTSZ, septum, coi 83.5 14 0.00049 28.9 12.4 51 405-455 11-61 (81)
46 1m1j_B Fibrinogen beta chain; 83.4 27 0.00091 36.8 15.7 25 203-227 89-113 (464)
47 3s4r_A Vimentin; alpha-helix, 81.7 19 0.00066 29.1 13.5 57 205-269 14-70 (93)
48 2efr_A General control protein 81.3 29 0.00099 30.8 23.5 46 492-541 84-129 (155)
49 3oja_A Leucine-rich immune mol 81.1 20 0.00069 37.8 14.4 33 306-338 441-473 (487)
50 2v4h_A NF-kappa-B essential mo 80.2 24 0.00083 29.2 12.1 19 277-295 77-95 (110)
51 1x79_B RAB GTPase binding effe 79.6 26 0.00089 29.3 13.9 45 493-541 53-97 (112)
52 1fxk_C Protein (prefoldin); ar 77.0 22 0.00076 30.4 10.8 30 309-338 3-32 (133)
53 1g6u_A Domain swapped dimer; d 76.6 14 0.00048 24.5 7.4 32 301-332 14-45 (48)
54 2a01_A Apolipoprotein A-I; fou 76.2 22 0.00076 34.0 11.6 10 335-344 13-22 (243)
55 1deq_A Fibrinogen (alpha chain 76.0 71 0.0024 32.4 17.5 66 394-459 54-119 (390)
56 2oqq_A Transcription factor HY 75.9 12 0.0004 25.3 6.4 38 255-299 3-40 (42)
57 3cvf_A Homer-3, homer protein 75.2 23 0.0008 27.6 9.1 45 256-300 14-58 (79)
58 2eqb_B RAB guanine nucleotide 75.0 32 0.0011 27.9 13.7 14 440-453 17-30 (97)
59 3i00_A HIP-I, huntingtin-inter 75.0 38 0.0013 28.7 11.4 46 430-479 35-80 (120)
60 3mq9_A Bone marrow stromal ant 74.4 77 0.0026 33.0 16.5 20 128-149 131-150 (471)
61 3ajw_A Flagellar FLIJ protein; 74.1 42 0.0015 28.9 14.2 89 253-341 10-101 (150)
62 2b9c_A Striated-muscle alpha t 73.7 24 0.00082 31.1 10.1 31 314-344 80-110 (147)
63 1deq_A Fibrinogen (alpha chain 73.6 60 0.002 32.9 14.0 16 384-399 215-230 (390)
64 2eqb_B RAB guanine nucleotide 73.4 35 0.0012 27.7 12.9 15 283-297 47-61 (97)
65 2v66_B Nuclear distribution pr 72.9 40 0.0014 28.1 16.4 25 492-520 77-101 (111)
66 3mq7_A Bone marrow stromal ant 72.0 43 0.0015 28.0 14.1 32 285-319 73-104 (121)
67 3iv1_A Tumor susceptibility ge 70.8 25 0.00086 27.3 8.3 22 249-270 40-61 (78)
68 3nmd_A CGMP dependent protein 70.4 12 0.00041 28.7 6.3 28 418-445 37-64 (72)
69 3nmd_A CGMP dependent protein 70.1 17 0.00057 27.9 7.0 29 267-295 38-66 (72)
70 3mov_A Lamin-B1; LMNB1, B-type 68.0 22 0.00076 28.8 7.9 24 436-459 20-43 (95)
71 1m1j_C Fibrinogen gamma chain; 67.8 64 0.0022 33.4 13.3 39 234-272 77-115 (409)
72 2yy0_A C-MYC-binding protein; 67.7 6.3 0.00022 28.4 4.1 40 298-337 10-49 (53)
73 1x79_B RAB GTPase binding effe 67.4 54 0.0018 27.4 13.7 26 494-519 61-86 (112)
74 3htk_A Structural maintenance 67.3 33 0.0011 24.9 8.7 47 252-298 9-55 (60)
75 1jcd_A Major outer membrane li 65.8 34 0.0012 24.5 7.6 42 261-302 10-51 (52)
76 2dq0_A Seryl-tRNA synthetase; 65.3 26 0.00087 37.0 10.0 61 271-331 33-93 (455)
77 1m1j_A Fibrinogen alpha subuni 65.2 1.1E+02 0.0036 31.9 13.9 14 311-324 143-156 (491)
78 3cvf_A Homer-3, homer protein 65.0 48 0.0016 25.9 9.3 45 409-453 15-59 (79)
79 3qh9_A Liprin-beta-2; coiled-c 64.9 48 0.0016 25.8 10.3 54 246-299 24-77 (81)
80 4emc_A Monopolin complex subun 64.9 37 0.0013 30.9 9.4 40 416-455 22-61 (190)
81 1f5n_A Interferon-induced guan 64.2 1.7E+02 0.0057 31.8 21.6 55 426-480 485-539 (592)
82 3ghg_C Fibrinogen gamma chain; 63.9 1.2E+02 0.0042 31.2 14.4 41 230-270 73-113 (411)
83 4ani_A Protein GRPE; chaperone 63.6 90 0.0031 29.2 12.3 50 513-565 109-158 (213)
84 3a7p_A Autophagy protein 16; c 62.8 80 0.0027 27.7 13.0 45 409-453 70-114 (152)
85 1gd2_E Transcription factor PA 62.5 14 0.00048 28.2 5.4 15 256-270 30-44 (70)
86 1ses_A Seryl-tRNA synthetase; 62.0 35 0.0012 35.5 10.2 58 271-330 30-87 (421)
87 4gkw_A Spindle assembly abnorm 61.9 74 0.0025 27.0 18.9 37 235-271 47-83 (167)
88 1gk4_A Vimentin; intermediate 61.3 57 0.002 25.6 11.0 43 431-473 4-46 (84)
89 1t3j_A Mitofusin 1; coiled coi 60.3 35 0.0012 27.7 7.5 45 208-255 48-92 (96)
90 2a01_A Apolipoprotein A-I; fou 59.8 1.2E+02 0.0041 28.8 16.6 23 389-411 92-114 (243)
91 1wt6_A Myotonin-protein kinase 59.5 51 0.0017 25.7 8.0 35 251-285 34-68 (81)
92 1t6f_A Geminin; coiled-coil, c 59.5 21 0.0007 23.2 4.8 27 270-296 8-34 (37)
93 1x8y_A Lamin A/C; structural p 59.3 56 0.0019 25.8 8.7 30 432-461 7-36 (86)
94 3vp9_A General transcriptional 59.2 19 0.00066 29.0 5.8 43 429-478 44-86 (92)
95 2zdi_C Prefoldin subunit alpha 59.1 29 0.001 30.5 7.8 27 420-446 111-137 (151)
96 3qne_A Seryl-tRNA synthetase, 58.7 21 0.00073 37.8 7.9 21 544-565 312-332 (485)
97 2akf_A Coronin-1A; coiled coil 56.9 24 0.00083 21.7 4.5 26 245-270 3-28 (32)
98 2ve7_C Kinetochore protein NUF 56.8 1.1E+02 0.0038 29.2 12.1 37 65-101 16-59 (250)
99 1go4_E MAD1 (mitotic arrest de 56.7 47 0.0016 27.1 7.8 32 270-301 13-44 (100)
100 3swk_A Vimentin; cytoskeleton, 56.2 73 0.0025 25.2 11.8 29 434-462 13-41 (86)
101 3m91_A Proteasome-associated A 55.9 52 0.0018 23.4 7.1 34 413-446 15-48 (51)
102 3jsv_C NF-kappa-B essential mo 54.7 82 0.0028 25.3 9.4 19 316-334 63-81 (94)
103 3haj_A Human pacsin2 F-BAR; pa 54.5 2.1E+02 0.0072 30.0 25.9 7 559-565 286-292 (486)
104 3okq_A BUD site selection prot 54.2 1.1E+02 0.0037 26.5 15.3 65 279-343 24-93 (141)
105 3efg_A Protein SLYX homolog; x 54.2 36 0.0012 26.5 6.5 41 410-450 17-57 (78)
106 1nfn_A Apolipoprotein E3; lipi 53.3 1.3E+02 0.0044 27.5 11.4 11 529-539 166-176 (191)
107 2zqm_A Prefoldin beta subunit 53.0 79 0.0027 26.0 9.2 14 317-330 80-93 (117)
108 3fpp_A Macrolide-specific effl 52.7 46 0.0016 32.9 9.1 62 269-330 76-137 (341)
109 1ik9_A DNA repair protein XRCC 52.1 1.5E+02 0.0052 27.6 11.9 56 211-272 143-199 (213)
110 3cl3_D NF-kappa-B essential mo 52.0 40 0.0014 28.6 6.8 22 493-514 84-105 (130)
111 3cve_A Homer protein homolog 1 51.5 79 0.0027 24.2 10.2 38 261-298 13-50 (72)
112 2w83_C C-JUN-amino-terminal ki 51.3 81 0.0028 24.3 10.4 39 306-344 36-74 (77)
113 3efg_A Protein SLYX homolog; x 51.2 49 0.0017 25.7 6.9 43 257-299 16-58 (78)
114 2i1j_A Moesin; FERM, coiled-co 51.0 40 0.0014 36.6 8.7 60 229-288 323-382 (575)
115 1go4_E MAD1 (mitotic arrest de 51.0 1E+02 0.0034 25.2 9.5 26 418-443 16-41 (100)
116 3viq_B Mating-type switching p 50.7 22 0.00076 28.1 4.8 15 348-362 40-54 (85)
117 1m1j_C Fibrinogen gamma chain; 50.1 1.5E+02 0.005 30.6 12.3 28 311-338 88-115 (409)
118 3lay_A Zinc resistance-associa 50.1 1.3E+02 0.0044 27.1 10.6 39 287-325 93-131 (175)
119 1a93_B MAX protein, coiled coi 49.8 25 0.00084 22.8 4.0 27 312-338 5-31 (34)
120 1wle_A Seryl-tRNA synthetase; 49.8 54 0.0018 34.9 9.3 24 308-331 117-140 (501)
121 3qh9_A Liprin-beta-2; coiled-c 49.2 92 0.0031 24.3 9.6 23 269-291 54-76 (81)
122 3uul_A Utrophin; spectrin repe 49.1 1E+02 0.0035 24.8 11.0 22 303-324 74-95 (118)
123 2e7s_A RAB guanine nucleotide 48.7 63 0.0022 27.9 7.8 10 286-295 70-79 (135)
124 2nrj_A HBL B protein; enteroto 48.6 2.2E+02 0.0076 28.5 17.1 17 307-323 226-242 (346)
125 1gk4_A Vimentin; intermediate 48.0 97 0.0033 24.2 12.2 21 439-459 5-25 (84)
126 1m1j_A Fibrinogen alpha subuni 47.9 2.6E+02 0.0088 29.1 15.5 27 395-421 53-79 (491)
127 2lw1_A ABC transporter ATP-bin 47.8 87 0.003 24.7 8.2 29 206-234 21-49 (89)
128 3aco_A Pacsin2, protein kinase 47.6 2.2E+02 0.0076 28.2 24.4 18 442-459 157-174 (350)
129 4fla_A Regulation of nuclear P 47.3 1.5E+02 0.005 26.1 13.2 7 185-191 14-20 (152)
130 2e7s_A RAB guanine nucleotide 47.0 1E+02 0.0034 26.6 8.7 29 415-443 26-54 (135)
131 2zqm_A Prefoldin beta subunit 47.0 1.2E+02 0.004 24.9 13.1 18 205-222 18-35 (117)
132 1gd2_E Transcription factor PA 47.0 74 0.0025 24.2 7.1 41 255-295 22-62 (70)
133 3r2p_A Apolipoprotein A-I; amp 46.8 1.1E+02 0.0039 27.6 9.9 13 527-539 169-181 (185)
134 2ocy_A RAB guanine nucleotide 46.8 1.5E+02 0.0052 26.1 19.0 19 440-458 49-67 (154)
135 4h22_A Leucine-rich repeat fli 46.4 1.2E+02 0.0041 24.8 9.9 59 242-300 24-82 (103)
136 1f5n_A Interferon-induced guan 46.3 3.1E+02 0.011 29.6 21.3 40 263-302 474-513 (592)
137 1t2k_D Cyclic-AMP-dependent tr 46.3 83 0.0028 22.9 7.8 17 416-432 24-40 (61)
138 2i1j_A Moesin; FERM, coiled-co 45.9 20 0.00069 38.9 5.4 63 236-298 337-399 (575)
139 3uun_A Dystrophin; triple heli 45.9 1.2E+02 0.0039 24.4 12.5 106 249-354 3-118 (119)
140 4dk0_A Putative MACA; alpha-ha 45.7 59 0.002 32.6 8.7 57 273-329 81-137 (369)
141 1lwu_C Fibrinogen gamma chain; 45.7 53 0.0018 32.8 7.9 36 412-447 10-45 (323)
142 2wt7_B Transcription factor MA 45.5 1.2E+02 0.0039 24.3 9.6 62 294-357 10-77 (90)
143 1lwu_C Fibrinogen gamma chain; 44.6 56 0.0019 32.6 7.9 32 241-272 5-36 (323)
144 1cii_A Colicin IA; bacteriocin 44.4 2.9E+02 0.01 28.7 19.5 144 210-370 335-487 (602)
145 2xdj_A Uncharacterized protein 44.1 1.1E+02 0.0039 23.9 9.7 28 413-440 26-53 (83)
146 2ke4_A CDC42-interacting prote 43.9 1.3E+02 0.0044 24.4 10.6 26 263-288 16-41 (98)
147 3mov_A Lamin-B1; LMNB1, B-type 43.6 1.1E+02 0.0038 24.6 8.2 47 434-480 11-57 (95)
148 2dq3_A Seryl-tRNA synthetase; 43.6 21 0.00073 37.2 4.9 58 273-330 34-91 (425)
149 2wt7_A Proto-oncogene protein 43.5 95 0.0033 22.8 8.2 24 413-436 22-45 (63)
150 3s84_A Apolipoprotein A-IV; fo 42.7 2.4E+02 0.0082 27.2 28.8 11 391-401 149-159 (273)
151 1lq7_A Alpha3W; three helix bu 41.8 40 0.0014 23.9 4.4 13 233-245 24-36 (67)
152 3he5_B Synzip2; heterodimeric 41.8 75 0.0026 21.4 5.5 16 246-261 22-37 (52)
153 2pnv_A Small conductance calci 41.6 57 0.002 22.3 5.1 23 429-451 17-39 (43)
154 3vem_A Helicase protein MOM1; 40.7 1.6E+02 0.0054 24.5 11.1 46 418-463 43-89 (115)
155 2efl_A Formin-binding protein 40.5 2.5E+02 0.0086 26.8 30.7 13 308-320 32-44 (305)
156 3iox_A AGI/II, PA; alpha helix 40.0 3.5E+02 0.012 28.4 16.8 12 355-366 96-107 (497)
157 2xdj_A Uncharacterized protein 39.9 1.3E+02 0.0046 23.5 9.5 9 290-298 34-42 (83)
158 4etp_A Kinesin-like protein KA 39.5 78 0.0027 32.6 8.4 28 269-296 31-58 (403)
159 1fxk_A Prefoldin; archaeal pro 39.5 1.5E+02 0.005 23.8 13.1 15 205-219 13-27 (107)
160 2l5g_B Putative uncharacterize 39.0 66 0.0023 21.8 4.9 29 314-342 9-37 (42)
161 3ljm_A Coil Ser L9C; de novo d 38.8 63 0.0022 19.5 4.3 15 237-251 4-18 (31)
162 1ci6_A Transcription factor AT 38.6 1.2E+02 0.004 22.4 8.2 22 434-455 36-57 (63)
163 2f1m_A Acriflavine resistance 38.3 1.4E+02 0.0049 28.2 9.8 43 284-326 75-117 (277)
164 3htk_A Structural maintenance 38.2 1.1E+02 0.0037 22.0 8.7 45 246-290 10-54 (60)
165 2l5g_B Putative uncharacterize 38.2 89 0.003 21.1 5.4 28 421-448 9-36 (42)
166 2ocy_A RAB guanine nucleotide 38.0 2.1E+02 0.0072 25.2 19.8 15 283-297 79-93 (154)
167 1ci6_A Transcription factor AT 37.7 1.2E+02 0.0041 22.3 7.5 37 413-449 22-58 (63)
168 1nlw_A MAD protein, MAX dimeri 37.6 65 0.0022 25.1 5.7 29 250-278 42-70 (80)
169 2d4y_A HAP1, flagellar HOOK-as 37.5 1.8E+02 0.0062 30.2 11.1 73 252-324 72-146 (463)
170 3ghg_B Fibrinogen beta chain; 37.4 3.5E+02 0.012 28.2 12.7 25 203-227 84-108 (461)
171 2b9c_A Striated-muscle alpha t 37.4 2.1E+02 0.0071 25.0 14.7 60 238-297 49-108 (147)
172 1d7m_A Cortexillin I; coiled-c 37.3 1.5E+02 0.0052 23.4 14.4 56 242-297 5-60 (101)
173 3lay_A Zinc resistance-associa 37.3 1.2E+02 0.0042 27.3 8.3 13 395-407 73-85 (175)
174 4f6o_A Metacaspase-1; rossmann 37.3 40 0.0014 34.1 5.6 49 53-104 68-126 (350)
175 3s9g_A Protein hexim1; cyclin 36.9 1.7E+02 0.0057 23.7 9.7 25 267-291 63-87 (104)
176 1t2k_D Cyclic-AMP-dependent tr 36.7 1.2E+02 0.0041 22.0 7.2 25 254-278 21-45 (61)
177 3cve_A Homer protein homolog 1 36.1 1.4E+02 0.0049 22.7 10.9 39 415-453 15-53 (72)
178 2oqq_A Transcription factor HY 35.4 1E+02 0.0035 20.8 6.3 28 418-445 7-34 (42)
179 1jnm_A Proto-oncogene C-JUN; B 35.3 76 0.0026 23.2 5.5 10 417-426 25-34 (62)
180 1dkg_A Nucleotide exchange fac 35.3 2E+02 0.0067 26.4 9.5 51 513-565 89-139 (197)
181 3d5a_X RF1, peptide chain rele 34.8 2.9E+02 0.01 27.7 11.4 20 215-234 4-23 (354)
182 4emc_A Monopolin complex subun 34.8 1.2E+02 0.0043 27.5 7.7 28 271-298 29-56 (190)
183 1wle_A Seryl-tRNA synthetase; 34.5 1.9E+02 0.0066 30.6 10.6 12 243-254 79-90 (501)
184 2bez_C E2 glycoprotein; coiled 34.5 1.5E+02 0.005 22.8 6.9 44 519-562 21-71 (77)
185 1nkp_B MAX protein, MYC proto- 33.8 68 0.0023 24.9 5.4 26 250-275 42-67 (83)
186 3s4r_A Vimentin; alpha-helix, 33.7 1.8E+02 0.0062 23.2 13.8 30 245-274 13-42 (93)
187 2xnx_M M protein, M1-BC1; cell 33.4 1.1E+02 0.0037 26.6 6.8 28 239-266 64-91 (146)
188 2x3v_A Syndapin I, protein kin 32.8 3.6E+02 0.012 26.3 27.2 12 446-457 152-163 (337)
189 1zxa_A CGMP-dependent protein 32.7 70 0.0024 24.1 4.8 40 260-299 16-55 (67)
190 1jcd_A Major outer membrane li 32.5 1.3E+02 0.0046 21.3 7.6 23 426-448 9-31 (52)
191 3abh_A Pacsin2, protein kinase 32.2 3.5E+02 0.012 26.0 23.2 29 495-523 209-237 (312)
192 2k48_A Nucleoprotein; viral pr 31.6 2.1E+02 0.0073 23.3 10.4 59 397-455 36-102 (107)
193 2pnv_A Small conductance calci 31.2 74 0.0025 21.7 4.3 25 256-280 10-34 (43)
194 3vem_A Helicase protein MOM1; 30.5 2.4E+02 0.008 23.5 11.0 39 488-526 64-102 (115)
195 2igp_A Retinoblastoma-associat 30.4 31 0.0011 29.2 3.0 41 113-157 21-61 (120)
196 3vp9_A General transcriptional 30.3 1.1E+02 0.0036 24.6 5.8 27 494-520 59-85 (92)
197 3cl3_D NF-kappa-B essential mo 30.1 1.3E+02 0.0045 25.5 6.6 25 341-365 82-106 (130)
198 3qne_A Seryl-tRNA synthetase, 30.0 1.8E+02 0.0061 30.7 9.3 35 308-342 72-106 (485)
199 1gmj_A ATPase inhibitor; coile 29.9 2E+02 0.0069 22.6 7.2 46 390-435 34-79 (84)
200 1a93_B MAX protein, coiled coi 29.5 88 0.003 20.2 4.1 23 424-446 10-32 (34)
201 4afl_A P29ING4, inhibitor of g 29.2 2.2E+02 0.0077 22.8 8.9 33 429-461 12-44 (104)
202 1fxk_C Protein (prefoldin); ar 29.0 1.7E+02 0.0059 24.6 7.7 42 256-297 89-130 (133)
203 2dq0_A Seryl-tRNA synthetase; 28.9 1.6E+02 0.0056 30.7 8.9 17 314-330 83-99 (455)
204 3u06_A Protein claret segregat 28.7 1.4E+02 0.0046 30.9 8.1 49 247-295 9-57 (412)
205 2wt7_B Transcription factor MA 28.6 2.1E+02 0.0072 22.8 7.3 37 414-450 48-84 (90)
206 1cxz_B Protein (PKN); protein- 28.4 1.4E+02 0.0046 23.7 6.1 24 273-296 60-83 (86)
207 1jnm_A Proto-oncogene C-JUN; B 27.5 76 0.0026 23.2 4.3 27 423-449 24-50 (62)
208 3m48_A General control protein 26.5 64 0.0022 20.6 3.0 15 285-299 16-30 (33)
209 1kd8_B GABH BLL, GCN4 acid bas 26.1 1.4E+02 0.0047 19.4 4.6 13 287-299 19-31 (36)
210 3q0x_A Centriole protein; cent 25.9 3.1E+02 0.011 25.7 9.3 13 347-359 104-116 (228)
211 1vcs_A Vesicle transport throu 25.5 1.1E+02 0.0037 24.9 5.3 30 302-331 62-91 (102)
212 2no2_A HIP-I, huntingtin-inter 25.5 2.8E+02 0.0095 22.7 16.5 12 467-478 54-65 (107)
213 2yko_A LINE-1 ORF1P; RNA-bindi 25.5 1.1E+02 0.0039 28.8 6.1 45 257-301 8-52 (233)
214 3ghg_B Fibrinogen beta chain; 25.2 5.9E+02 0.02 26.4 12.3 42 238-279 85-126 (461)
215 2ee7_A Sperm flagellar protein 25.2 2.2E+02 0.0075 24.2 7.4 66 52-126 9-91 (127)
216 3m91_A Proteasome-associated A 24.9 1.9E+02 0.0064 20.5 6.6 23 272-294 26-48 (51)
217 1nkp_A C-MYC, MYC proto-oncoge 24.8 2E+02 0.0068 22.6 6.6 25 250-274 47-71 (88)
218 4dnd_A Syntaxin-10, SYN10; str 24.7 3.2E+02 0.011 23.2 12.8 24 303-326 101-124 (130)
219 3swy_A Cyclic nucleotide-gated 24.4 1.8E+02 0.0061 20.1 6.9 30 428-457 5-34 (46)
220 3he5_B Synzip2; heterodimeric 24.4 1.7E+02 0.0057 19.7 6.8 13 238-250 7-19 (52)
221 3c3f_A Alpha/beta peptide with 24.0 1.5E+02 0.005 19.0 4.3 14 285-298 17-30 (34)
222 2w6a_A ARF GTPase-activating p 23.9 2.1E+02 0.0072 20.8 8.4 37 260-296 25-61 (63)
223 2ke4_A CDC42-interacting prote 23.6 2.9E+02 0.0099 22.3 10.2 6 205-210 20-25 (98)
224 3uux_B Mitochondrial division 23.5 4.7E+02 0.016 24.6 11.2 37 242-278 171-207 (242)
225 1uo4_A General control protein 23.5 86 0.0029 20.1 3.2 15 285-299 17-31 (34)
226 3vmx_A Voltage-gated hydrogen 23.4 1.9E+02 0.0066 20.1 7.0 30 249-278 5-34 (48)
227 3q0x_A Centriole protein; cent 23.3 3.6E+02 0.012 25.3 9.1 32 427-458 184-215 (228)
228 2efk_A CDC42-interacting prote 23.1 4.9E+02 0.017 24.7 30.8 44 397-440 99-142 (301)
229 3iox_A AGI/II, PA; alpha helix 22.9 6.7E+02 0.023 26.3 17.3 34 436-469 17-50 (497)
230 1kd8_A GABH AIV, GCN4 acid bas 22.9 1.2E+02 0.0041 19.7 3.9 11 287-297 19-29 (36)
231 1zxa_A CGMP-dependent protein 22.7 1.6E+02 0.0054 22.2 5.2 25 423-447 27-51 (67)
232 3a2a_A Voltage-gated hydrogen 22.7 2.1E+02 0.0073 20.4 6.6 31 249-279 12-42 (58)
233 4fla_A Regulation of nuclear P 22.6 3.9E+02 0.013 23.3 13.2 32 268-299 113-144 (152)
234 4hpq_C ATG17, KLTH0D15642P; au 22.6 6.4E+02 0.022 25.8 27.6 94 205-298 199-292 (413)
235 2avr_X Adhesion A; antiparalle 22.4 3.5E+02 0.012 22.7 15.2 31 499-529 71-101 (119)
236 1lq7_A Alpha3W; three helix bu 22.2 2.1E+02 0.0073 20.2 6.0 40 235-274 3-44 (67)
237 2oto_A M protein; helical coil 22.0 3.9E+02 0.013 23.1 20.8 36 418-453 47-82 (155)
238 2wvr_A Geminin; DNA replicatio 21.9 3.5E+02 0.012 24.8 8.3 61 253-313 99-159 (209)
239 1fxk_A Prefoldin; archaeal pro 21.8 3E+02 0.01 21.8 12.1 8 419-426 13-20 (107)
240 2c5k_T Syntaxin TLG1, T-snare 21.7 3.1E+02 0.011 21.9 8.4 23 305-327 66-88 (95)
241 2oxj_A Hybrid alpha/beta pepti 21.6 1.7E+02 0.0057 18.8 4.3 14 285-298 17-30 (34)
242 3swf_A CGMP-gated cation chann 21.4 2.8E+02 0.0095 21.2 7.9 31 428-458 7-37 (74)
243 3caz_A BAR protein; thermo-aci 21.3 4.6E+02 0.016 23.7 13.7 46 517-562 153-198 (294)
244 4fi5_A Nucleoprotein; structur 21.2 3.5E+02 0.012 22.3 10.0 28 428-455 62-89 (113)
245 3qwe_A GMIP, GEM-interacting p 21.1 5.7E+02 0.019 24.7 19.0 39 485-523 184-222 (279)
246 2zxx_A Geminin; coiled-coil, c 20.9 2.8E+02 0.0097 21.5 6.4 59 254-312 19-77 (79)
247 1ses_A Seryl-tRNA synthetase; 20.8 2.1E+02 0.0072 29.5 7.8 11 243-253 37-47 (421)
248 3l4q_C Phosphatidylinositol 3- 20.7 4.5E+02 0.015 23.4 14.5 73 239-311 94-166 (170)
249 3s9g_A Protein hexim1; cyclin 20.6 3.4E+02 0.012 21.9 8.5 22 411-432 34-55 (104)
250 2xnx_M M protein, M1-BC1; cell 20.5 3.7E+02 0.013 23.3 7.8 13 317-329 118-130 (146)
251 3lss_A Seryl-tRNA synthetase; 20.5 3.9E+02 0.013 28.1 9.8 25 316-340 113-137 (484)
252 3hhm_B NISH2 P85alpha; PI3KCA, 20.4 6.7E+02 0.023 25.2 13.0 33 281-313 245-277 (373)
253 2w6b_A RHO guanine nucleotide 20.4 2.4E+02 0.0083 20.1 5.6 29 309-337 19-47 (56)
254 2wuj_A Septum site-determining 20.4 90 0.0031 22.5 3.4 37 192-228 19-55 (57)
255 2p22_A Suppressor protein STP2 20.2 4.7E+02 0.016 23.4 10.9 40 237-276 45-84 (174)
No 1
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=100.00 E-value=1.5e-42 Score=354.86 Aligned_cols=176 Identities=24% Similarity=0.481 Sum_probs=150.1
Q ss_pred CCCCCCChHHHHHHHHHHHHHhhhCCCC--CCCCCCCCCCHHHHHHHHHHHHHcCCCC--C-CcChHhHHHHHHHhcCCC
Q 008135 51 AADLYTDRSHQSSAIRAINAHLSSHSFH--IAFPLKQVPSVKDITDVIKFLISQLDYP--S-TTKFEEDLFVVLKSLSCP 125 (576)
Q Consensus 51 d~rpl~dk~~q~~~~~~i~~fL~~~~~~--~~~k~l~~pt~k~f~~i~~~L~~~ld~~--~-~~k~eeev~~~lk~l~yP 125 (576)
|||||+||+||++|++.|++||+++||+ ++.+.|++||+|||+.||+|||++|||. | +.++|+|||.+||.||||
T Consensus 4 DpRpl~Dk~~q~~~~~~i~~fL~~~~~~~~is~k~L~~Pt~KdF~~if~fL~~~idp~~~~~~~k~eeev~~~lK~L~YP 83 (315)
T 2ve7_A 4 DPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYP 83 (315)
T ss_dssp CCSCTTCHHHHHHHHHHHHHHHHHTTCSSCCCTGGGSSCCHHHHHHHHHHHHTTTSTTCCCCSSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCHHHHHHHHHHHHHhcCCCCccCCCChHHHHHHHHHHcCCC
Confidence 8999999999999999999999999997 6788899999999999999999999954 5 479999999999999999
Q ss_pred CcccccccccCCCCCChHHHHHHHHHHHHHHHHhhhhhhCCcc--------------cccchHHHHHHHHHHHHHHcCCC
Q 008135 126 FKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKA--------------FVENNSMYMYASDSYLNYIEGKD 191 (576)
Q Consensus 126 ~~i~ks~l~~~g~~h~wp~~l~~L~WLv~l~~~~~~~~~~~~~--------------~~~~~~~~~y~~~~Y~~fl~g~d 191 (576)
|+||||+|+|||+||+||++||||+|||+|+++...+..++.. ...+.+||+|+.+||+.||.|+|
T Consensus 84 ~~isKS~L~a~g~pHsWp~~Lg~L~WLvel~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~y~~~~Y~~fl~~~d 163 (315)
T 2ve7_A 84 FALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPLFDDGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGAD 163 (315)
T ss_dssp SCCCHHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHHHHHCC---------CCBCTTSCBSHHHHHHHHHHHHHHHHHTCS
T ss_pred ceeCHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccccccchhcccccccccchHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999998877554321 01245799999999999999996
Q ss_pred CCchhhhHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHH
Q 008135 192 GDVDNIDKGFIEKLEK-------EKENVSEYVEELKKKVSEME 227 (576)
Q Consensus 192 ~~~~~l~~~~~~kl~~-------~~~~~~~~~~~L~~~~~~le 227 (576)
+ ++++++++.+++.+ +++++.++++.|++++++|+
T Consensus 164 ~-~~~~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le 205 (315)
T 2ve7_A 164 S-FDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLE 205 (315)
T ss_dssp C-CHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 47899999888887 44445555555555555544
No 2
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=265.75 Aligned_cols=109 Identities=28% Similarity=0.542 Sum_probs=104.2
Q ss_pred CCCCCCChHHHHHHHHHHHHHhhhCCCC--CCCCCCCCCCHHHHHHHHHHHHHcCCCC--C-CcChHhHHHHHHHhcCCC
Q 008135 51 AADLYTDRSHQSSAIRAINAHLSSHSFH--IAFPLKQVPSVKDITDVIKFLISQLDYP--S-TTKFEEDLFVVLKSLSCP 125 (576)
Q Consensus 51 d~rpl~dk~~q~~~~~~i~~fL~~~~~~--~~~k~l~~pt~k~f~~i~~~L~~~ld~~--~-~~k~eeev~~~lk~l~yP 125 (576)
|||||+||+||++|++.|++||.++||+ ++.+.|++||+|||+.||+||+++||+. | +.++||||+.+||.||||
T Consensus 6 DpRpl~Dk~~q~~~~~~i~~fL~~~~~~~~is~k~L~~Pt~kdF~~if~fL~~~idp~~~~~~~~~eeev~~~lK~L~YP 85 (120)
T 2igp_A 6 DPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYP 85 (120)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHHTTCSSCCCTTTTSSCCHHHHHHHHHHHHTTTCTTCCCCCTTHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHHHHhcCCCCccCCCChHHHHHHHHHHcCCC
Confidence 9999999999999999999999999997 6788999999999999999999999954 5 479999999999999999
Q ss_pred CcccccccccCCCCCChHHHHHHHHHHHHHHHHh
Q 008135 126 FKINKSTLRSPNSPHNWPAYLALIHWLVQIASYN 159 (576)
Q Consensus 126 ~~i~ks~l~~~g~~h~wp~~l~~L~WLv~l~~~~ 159 (576)
|.|+||+|+|||+||+||++||||+|||+|++|.
T Consensus 86 ~~isKS~L~a~g~pHsWp~~L~~L~WLvel~~~~ 119 (120)
T 2igp_A 86 FALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIH 119 (120)
T ss_dssp SCCCHHHHHTTTSTTTHHHHHHHHHHHHHHHHHC
T ss_pred ceeCHHHhcCCCCCccHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999874
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.08 E-value=9.3e-06 Score=97.10 Aligned_cols=11 Identities=18% Similarity=0.377 Sum_probs=6.5
Q ss_pred HHHHHHHhcCC
Q 008135 114 DLFVVLKSLSC 124 (576)
Q Consensus 114 ev~~~lk~l~y 124 (576)
-+-.+|+.++.
T Consensus 751 ~~~~lL~~l~l 761 (1184)
T 1i84_S 751 ACILMIKALEL 761 (1184)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHHcCC
Confidence 45566776654
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.59 E-value=0.037 Score=54.33 Aligned_cols=149 Identities=13% Similarity=0.095 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHhhh
Q 008135 409 SVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAE-----EAKKMEEDIQTEAHNL 483 (576)
Q Consensus 409 ~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~-----Ei~kl~eele~~~~~~ 483 (576)
+..+..++..++..+..+...+......+..++..+..++..++.....+......... +...+..+++.++...
T Consensus 27 ~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i 106 (256)
T 3na7_A 27 IREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERS 106 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 33444555555555666666666666666666666655555555555555444442221 3333444443332111
Q ss_pred hHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 008135 484 DMVE----------REAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSE 553 (576)
Q Consensus 484 ~~~~----------~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~ 553 (576)
..++ ......+..++.++..+..++.+.+..+...+..+-..+.....+...-...+..+++..|+.|..
T Consensus 107 ~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 107 NQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1111 223344455555555555555555555555555555555555555555555677889999999988
Q ss_pred HHhc
Q 008135 554 AYKN 557 (576)
Q Consensus 554 ~f~~ 557 (576)
++.+
T Consensus 187 ~~~g 190 (256)
T 3na7_A 187 WAKN 190 (256)
T ss_dssp HHGG
T ss_pred hCCC
Confidence 7654
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.20 E-value=0.076 Score=52.07 Aligned_cols=92 Identities=11% Similarity=0.075 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 008135 247 EEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADA 326 (576)
Q Consensus 247 ~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~ 326 (576)
...+..+..-+..+...+......+..++.++...+.++..+...+.+.+.++..-. +..++..+.+|++.+++.+..+
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~l 109 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQA 109 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444455555555555555555666666677777765433 6677777777777777666666
Q ss_pred HHHHHHHHHhhhH
Q 008135 327 ENARNEWESKTWD 339 (576)
Q Consensus 327 e~~~~~l~~~~~~ 339 (576)
+..+.++...+..
T Consensus 110 E~eile~~e~ie~ 122 (256)
T 3na7_A 110 NREIENLQNEIKR 122 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6555544444333
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.56 E-value=2.8 Score=54.40 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 008135 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEV 493 (576)
Q Consensus 414 ~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~e 493 (576)
+++..++.++......+.+++..+..++.++..++.+|+....+.+ .+..+++..+..|+... .+......|
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~----~L~~e~~~~~~kl~rA~----~Li~gL~~E 2085 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETE----QIKTESSKVKNKVDRSI----ALLDNLNSE 2085 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH----HHHHhhhhc
Confidence 3444556666666666777777777777777777777776655432 23333433333333322 111222345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 494 LKASESKFQEAIRQCEEEIQIRALDLFA 521 (576)
Q Consensus 494 l~~~~~~~ee~~~e~eeek~~l~~el~~ 521 (576)
-.+|....+.+. .+...|..+..=
T Consensus 2086 k~RW~~~~~~l~----~~~~~L~GD~LL 2109 (3245)
T 3vkg_A 2086 RGRWEQQSENFN----TQMSTVVGDVVL 2109 (3245)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred cccHHHHHHHHH----HHHHhccHHHHH
Confidence 556665555544 566666666543
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.19 E-value=0.53 Score=43.45 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 309 VERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKR 364 (576)
Q Consensus 309 i~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~k 364 (576)
+..+..+...|......+...+..|++...+++.+.......++.+=..||.++-+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr 145 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIER 145 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44455555555555556666666666666677766666667777777777777654
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.76 E-value=3.7 Score=53.41 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 008135 288 ICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADA 326 (576)
Q Consensus 288 l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~ 326 (576)
+.....+|+.-|+.-.-+.++|+.|+.+...++..|++.
T Consensus 1915 l~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k 1953 (3245)
T 3vkg_A 1915 LEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVK 1953 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444454444444445566666666666655555544
No 9
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.68 E-value=0.67 Score=41.81 Aligned_cols=111 Identities=18% Similarity=0.194 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008135 241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVE 320 (576)
Q Consensus 241 ~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~ 320 (576)
+....+..-+..++..+..++.....+++.+..++..|+.......+-..-+.+|+.+|..- ..|++++.....++.
T Consensus 41 k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L---~~El~~~k~~~~k~~ 117 (168)
T 3o0z_A 41 KSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSL---QEEVKHLKHNLEKVE 117 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34444555555555666666666666666677776666666666666666666666655544 245666666666666
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008135 321 RDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354 (576)
Q Consensus 321 ~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l 354 (576)
.+...+...+..+++....+++.+.-.++.+...
T Consensus 118 ~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~ 151 (168)
T 3o0z_A 118 GERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6666666666666666666665554444444433
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.56 E-value=1.3 Score=39.96 Aligned_cols=69 Identities=10% Similarity=0.095 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008135 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQT 303 (576)
Q Consensus 235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~ 303 (576)
....|+++...|++-+.....-.......+.+++.++..+..|++........+..++..|...|....
T Consensus 63 ~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 63 SKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555566666677788888888888888877777777777777766655543
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.55 E-value=0.53 Score=55.39 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008135 435 KRIDALQFHINEMETQLNLLSK 456 (576)
Q Consensus 435 ~~l~~Le~kl~~l~~ql~~lk~ 456 (576)
..++.|+.....|+.+++.+..
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.52 E-value=0.32 Score=57.27 Aligned_cols=85 Identities=13% Similarity=0.219 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008135 239 LEKEKCVLEEDLNKFNAI---IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRE 315 (576)
Q Consensus 239 l~~~~~~L~~D~~K~~~~---i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~E 315 (576)
+..+...|+.|++.++.. ....+.++..++.++.++++++.....+.+.+++....++..+. +.+..|..+
T Consensus 958 ~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~------~kv~~L~~e 1031 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE------QLVSELKEQ 1031 (1080)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 444555555554444443 22233344444444444444444444444444444444443222 334445555
Q ss_pred HHHHHHHHHHHHHH
Q 008135 316 LQAVERDIADAENA 329 (576)
Q Consensus 316 r~~L~~~l~~~e~~ 329 (576)
...|++.+++++..
T Consensus 1032 ~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 1032 NTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555433
No 13
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.06 E-value=1.3 Score=38.37 Aligned_cols=66 Identities=17% Similarity=0.264 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 008135 418 SLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNL 483 (576)
Q Consensus 418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~ 483 (576)
..+.++.+++..+...+.++.++......|+..+.......+.........+..++.++...+.+|
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333444444444444444444444444444444444444444343344444555555555544333
No 14
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.78 E-value=2.1 Score=35.46 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (576)
Q Consensus 236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL 295 (576)
.+.+++++..|+.|......-.+.++......+......+.++......+..++.+.+.+
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ 63 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666555555555555555544444444444444444
No 15
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.53 E-value=1.4 Score=38.37 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 008135 418 SLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNL 483 (576)
Q Consensus 418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~ 483 (576)
..+.++.+++..+...+.++..+......|+..+.................+..++.++...+.+|
T Consensus 35 ~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em 100 (131)
T 3tnu_A 35 SGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEM 100 (131)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444343344444555555555544333
No 16
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.34 E-value=2.9 Score=34.51 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (576)
Q Consensus 246 L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~ 298 (576)
+..++..++.-+..++......+..+......|+.........+.++..|.++
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rr 94 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333344444433
No 17
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=93.31 E-value=3.7 Score=35.52 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 008135 418 SLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKAS 497 (576)
Q Consensus 418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~~~ 497 (576)
.+...+..+...+.........|+.+...+..+.+.+...++.+... .++++.....+...+..+.....++.+.+...
T Consensus 17 ~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~-l~e~EE~~~~L~~~k~eLe~~l~el~~rleee 95 (129)
T 2fxo_A 17 SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDN-LADAEERCDQLIKNKIQLEAKVKEMNKRLEDE 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445554554444444455555555555555555555444322 22333333333333333332223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 498 ESKFQEAIRQCEEEIQIRALDLFALVDSV 526 (576)
Q Consensus 498 ~~~~ee~~~e~eeek~~l~~el~~l~~~i 526 (576)
+.+...+. .+++++..++..+-..|
T Consensus 96 ee~~~~L~----~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 96 EEMNAELT----AKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 33322222 45555555555444433
No 18
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.26 E-value=5 Score=36.94 Aligned_cols=10 Identities=20% Similarity=0.511 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 008135 469 AKKMEEDIQT 478 (576)
Q Consensus 469 i~kl~eele~ 478 (576)
+..|..++..
T Consensus 90 ~~~Lq~el~~ 99 (189)
T 2v71_A 90 VSVLEDDLSQ 99 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 19
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=93.05 E-value=3.5 Score=35.84 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=56.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh------ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 008135 203 EKLEKEKENVSEYVEELKKKVSEMEG------AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNM-RKEKMEKLVEEK 274 (576)
Q Consensus 203 ~kl~~~~~~~~~~~~~L~~~~~~le~------l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~-~~~~~e~~l~~l 274 (576)
.+|....+.+...+..|+..++.|.. .+-.|..++.+.+++..+..++.+++.||....- =.+.|+.+|...
T Consensus 17 ~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~V 95 (141)
T 3okq_A 17 TELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKV 95 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Confidence 46777777888888888888888776 4556668889999999999999999999988773 355677665554
No 20
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=92.49 E-value=4.5 Score=34.43 Aligned_cols=109 Identities=13% Similarity=0.175 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 254 NAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEW 333 (576)
Q Consensus 254 ~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l 333 (576)
+.-+++++.+-.-.++.|..+..|+......++.....+.+-..+-.+|.+.+.-..++......-..-++.+...+..|
T Consensus 45 qgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~L 124 (167)
T 4gkw_A 45 QGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGIL 124 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHH
Confidence 34455555555555555666655555555545444444433333333343332222222222222222345566667777
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 334 ESKTWDLDSKLGRKFKELEALSMECNQAM 362 (576)
Q Consensus 334 ~~~~~~~e~~l~~~~e~le~l~~~yn~~~ 362 (576)
++...+.-.......++++++-.+--.+.
T Consensus 125 rKELEdEklK~~E~MdSFE~LkvENE~vk 153 (167)
T 4gkw_A 125 RKELENEKLKAAENMDSFEKLSMENENLK 153 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhHH
Confidence 77777777777888888888765533333
No 21
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.45 E-value=4 Score=33.68 Aligned_cols=8 Identities=25% Similarity=0.347 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 008135 245 VLEEDLNK 252 (576)
Q Consensus 245 ~L~~D~~K 252 (576)
.|+.+...
T Consensus 13 ~lk~e~e~ 20 (101)
T 3u59_A 13 MLKLDKEN 20 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.39 E-value=0.81 Score=50.09 Aligned_cols=16 Identities=0% Similarity=-0.039 Sum_probs=6.4
Q ss_pred HhHHHHHHHHHHHHHH
Q 008135 540 MNKGISETALTVSEAY 555 (576)
Q Consensus 540 ~~~~~~~~~~~i~~~f 555 (576)
++.++.+-...++++|
T Consensus 570 ~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 570 KRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHhcCCC
Confidence 3444555555555554
No 23
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.42 E-value=7.6 Score=33.02 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHhH
Q 008135 418 SLQQQSSEMAAKIEGK 433 (576)
Q Consensus 418 ~Lq~~l~~l~~~ieek 433 (576)
.++-+++.+...+++.
T Consensus 38 ~l~leldn~~~~~edf 53 (119)
T 3ol1_A 38 RVEVERDNLAEDIMRL 53 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 24
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.15 E-value=8.9 Score=40.60 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 312 MRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAM 362 (576)
Q Consensus 312 ~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~ 362 (576)
++++.+..+..++.+....+.++....+....+......+..++..--.++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLA 483 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHH
Confidence 334444444444444444444455555555555555555544444433333
No 25
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=90.10 E-value=7.8 Score=40.90 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH
Q 008135 510 EEIQIRALDLFALVDSV-------------SKYKERMESKISKM 540 (576)
Q Consensus 510 eek~~l~~el~~l~~~i-------------~k~K~~i~~~i~~~ 540 (576)
-+.++|...|...++.- .+.=+.+|+.|+++
T Consensus 145 ~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 145 VDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHH
Confidence 45555555555555332 33345566666653
No 26
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.72 E-value=8.1 Score=32.34 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 310 ERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMK 363 (576)
Q Consensus 310 ~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~ 363 (576)
..+..+...|...-+.+...+..|++...+++.+-.....+++.+=..||..+-
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiE 91 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIE 91 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334444444444444444555555555555565555555666666666666553
No 27
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=89.35 E-value=6.7 Score=30.84 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 008135 200 GFIEKLEKEKENVSEYVEELKKKVSEME 227 (576)
Q Consensus 200 ~~~~kl~~~~~~~~~~~~~L~~~~~~le 227 (576)
+..++|...+....+.+.-|+-++.+|.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELK 33 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELK 33 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777766666554
No 28
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=89.27 E-value=9.9 Score=32.72 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 243 KCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIG 279 (576)
Q Consensus 243 ~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele 279 (576)
+..|...+.+.......++.....+......+...|.
T Consensus 22 l~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~ 58 (129)
T 2fxo_A 22 FTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344344334333333333333
No 29
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.19 E-value=4.3 Score=32.03 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKE 275 (576)
Q Consensus 239 l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~ 275 (576)
+++++..|+.|......-...++......+......+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E 40 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLE 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444444444444444444444444444333333333
No 30
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.64 E-value=6.8 Score=41.30 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 008135 313 RRELQAVERDIA 324 (576)
Q Consensus 313 ~~Er~~L~~~l~ 324 (576)
..++++|+.+|+
T Consensus 144 ~~kIQRLEvDId 155 (562)
T 3ghg_A 144 LVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 31
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=88.62 E-value=3.6 Score=33.05 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 275 EREIGKKVEEHKRICEENEEFKKRVKLQTI---NARDVERMRRELQAVERDIADAENARNEWE 334 (576)
Q Consensus 275 ~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~---s~~di~r~~~Er~~L~~~l~~~e~~~~~l~ 334 (576)
+.+++.....|..++.++.+|...+.+-.+ +.+.+..+..++..+...|+.+......|+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777778888888999999988664 567777777888888888877766655443
No 32
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.45 E-value=9.5 Score=32.82 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135 415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQT 478 (576)
Q Consensus 415 e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~ 478 (576)
++..+...+..+...++..++....|+..+.+++..++.....++.......+++..++.+|+.
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444455555555555555666666666666666666666666666665666666666666655
No 33
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=87.33 E-value=8.9 Score=33.11 Aligned_cols=64 Identities=11% Similarity=0.230 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135 415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQT 478 (576)
Q Consensus 415 e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~ 478 (576)
++..+...+..+...++..++....|+..+.+++..+......++.......+++..++.+|+.
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555566666666666666665555555555566666666666555
No 34
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=87.14 E-value=23 Score=34.53 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008135 513 QIRALDLFALVDSVSKYKERMESKISKMNKGIS 545 (576)
Q Consensus 513 ~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~ 545 (576)
+.+...+.++-..+.-|-..++..++-+.+||-
T Consensus 234 ~~l~~~~e~l~~~l~~~~~~~~~~~~~~~~d~~ 266 (273)
T 3s84_A 234 KALVQQMEQLRQKLGPHAGDVEGHLSFLEKDLR 266 (273)
T ss_dssp HHHHHHHHHHHHHHSCC----------------
T ss_pred HHHHHHHHHHHHHhCcchhhHHhhhhHHHHHHH
Confidence 333344444444444444444444444444443
No 35
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.13 E-value=5.1 Score=35.07 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 249 DLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICE 290 (576)
Q Consensus 249 D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~ 290 (576)
|+-+.+.-.+.++..+..+.+.+..++.++.....+++.+..
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~ 110 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAK 110 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333333333333
No 36
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=87.12 E-value=16 Score=32.52 Aligned_cols=9 Identities=33% Similarity=0.564 Sum_probs=3.4
Q ss_pred HHhhhHHHH
Q 008135 334 ESKTWDLDS 342 (576)
Q Consensus 334 ~~~~~~~e~ 342 (576)
....|.++.
T Consensus 139 ~~~~~~~~~ 147 (155)
T 2efr_A 139 LSKNYHLEN 147 (155)
T ss_dssp HHHHHHHHH
T ss_pred ccchHHHHH
Confidence 333343333
No 37
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=86.93 E-value=3.8 Score=32.77 Aligned_cols=47 Identities=17% Similarity=0.283 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 008135 264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVE 310 (576)
Q Consensus 264 ~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~ 310 (576)
..++...+.+.+++-+....+.+.-++.++++...+...|+|++|+-
T Consensus 33 leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~~GI~~eeL~ 79 (86)
T 3nr7_A 33 LEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 33344444444455555555666667888999999999999999974
No 38
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=86.18 E-value=26 Score=36.71 Aligned_cols=13 Identities=15% Similarity=0.279 Sum_probs=5.8
Q ss_pred HHHHHHHHHHcCC
Q 008135 178 YASDSYLNYIEGK 190 (576)
Q Consensus 178 y~~~~Y~~fl~g~ 190 (576)
.+...+..++.|.
T Consensus 356 ~~~~~~~~vl~G~ 368 (471)
T 3mq9_A 356 AVRTAVINAASGR 368 (471)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCC
Confidence 3344444444554
No 39
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.09 E-value=3.8 Score=34.21 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008135 261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTI 304 (576)
Q Consensus 261 ~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~ 304 (576)
+.++++++.+|..+...|.....+++.+..++..|..+|..++.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~~ 113 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKKY 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhccc
Confidence 44566666667777777777777777888888888888877774
No 40
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=85.60 E-value=9.8 Score=33.55 Aligned_cols=28 Identities=11% Similarity=0.009 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 272 EEKEREIGKKVEEHKRICEENEEFKKRV 299 (576)
Q Consensus 272 ~~l~~Ele~~~~e~~~l~~e~~eL~~~l 299 (576)
..++-++...+..+..++.|+..|-.+.
T Consensus 106 ~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 106 ISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444445555544443
No 41
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.41 E-value=12 Score=32.76 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 240 EKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (576)
Q Consensus 240 ~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~ 298 (576)
+.+...|..+++....-+..+.......+-++..+.++++....++..++.++.+|+..
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444443
No 42
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=84.67 E-value=16 Score=30.30 Aligned_cols=16 Identities=6% Similarity=0.246 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 008135 309 VERMRRELQAVERDIA 324 (576)
Q Consensus 309 i~r~~~Er~~L~~~l~ 324 (576)
-++++.+++.|..++.
T Consensus 85 REkl~~eKe~L~~ql~ 100 (110)
T 2v4h_A 85 REKLVEKKEYLQEQLE 100 (110)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHH
Confidence 3334444444443333
No 43
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=84.02 E-value=6.7 Score=33.40 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 262 MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (576)
Q Consensus 262 ~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~ 300 (576)
..+..+...+..|+.+|............+++.|...++
T Consensus 40 ~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 40 RVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555655554444444455555544433
No 44
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=84.00 E-value=19 Score=30.54 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 437 IDALQFHINEMETQLNLLSKETQEI 461 (576)
Q Consensus 437 l~~Le~kl~~l~~ql~~lk~e~eee 461 (576)
.+.|..+++.+....+..+..++++
T Consensus 36 ~a~l~leldn~~~~~edfk~KyE~E 60 (119)
T 3ol1_A 36 KARVEVERDNLAEDIMRLREKLQEE 60 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3334444444444444444444433
No 45
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.54 E-value=14 Score=28.94 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 405 VKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLS 455 (576)
Q Consensus 405 i~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk 455 (576)
+..++....+.+.-|+.+++++.........++..+......+..+.+.++
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk 61 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333344444444444444444443333333333333333333333333333
No 46
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=83.35 E-value=27 Score=36.77 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=13.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 008135 203 EKLEKEKENVSEYVEELKKKVSEME 227 (576)
Q Consensus 203 ~kl~~~~~~~~~~~~~L~~~~~~le 227 (576)
+-|.+.-..+...++.|+..+.+|+
T Consensus 89 D~L~k~q~~V~~~LqeLe~~l~~ls 113 (464)
T 1m1j_B 89 TTLLKQEKTVKPVLRDLKDRVAKFS 113 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHhHHHHHHHHHHHHh
Confidence 3444444445555565655555554
No 47
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=81.71 E-value=19 Score=29.06 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=28.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 205 LEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEK 269 (576)
Q Consensus 205 l~~~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~ 269 (576)
|...+++..+.+..|++....|+. .+..+..+.. ..+-..|..+|..+...+..+..
T Consensus 14 LNdRlAsyIdKVR~LEqqN~~Le~------~i~~l~~~~~--~~~~~~ye~~i~~Lr~~i~~~~~ 70 (93)
T 3s4r_A 14 LNDRFANLIDKVRFLEQQNKILLA------ELEQLKGQGK--SRLGDLYEEEMRELRRQVDQLTN 70 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhccC--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 555566666677777777766663 3333332211 12333455555555444444333
No 48
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=81.27 E-value=29 Score=30.82 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135 492 EVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMN 541 (576)
Q Consensus 492 ~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~ 541 (576)
..++.++.|++.+. ....+|...+.++.+.+...|.+....-+.|+
T Consensus 84 ~kLKEAE~RAE~AE----Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 84 DKLKEAETRAEFAE----RSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777766 56677888888888877666665544444333
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.14 E-value=20 Score=37.78 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008135 306 ARDVERMRRELQAVERDIADAENARNEWESKTW 338 (576)
Q Consensus 306 ~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~ 338 (576)
.++++.+..+.+.++..+.++..++....++..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 344555555555555555555554444444433
No 50
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=80.15 E-value=24 Score=29.22 Aligned_cols=19 Identities=11% Similarity=0.312 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008135 277 EIGKKVEEHKRICEENEEF 295 (576)
Q Consensus 277 Ele~~~~e~~~l~~e~~eL 295 (576)
+..+.....+.+..++++|
T Consensus 77 DF~aERadREkl~~eKe~L 95 (110)
T 2v4h_A 77 DFQAERHAREKLVEKKEYL 95 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHccchhhHHHHHhHHHHH
Confidence 3333333333344444433
No 51
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=79.59 E-value=26 Score=29.28 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135 493 VLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMN 541 (576)
Q Consensus 493 el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~ 541 (576)
.+..++..+.++.+.+...++.+...|..|. ...+.+...+..+.
T Consensus 53 ~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt----~~Re~V~~eL~rLQ 97 (112)
T 1x79_B 53 RAQASEILLEELQQGLSQAKRDVQEQMAVLM----QSREQVSEELVRLQ 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3344455555555555555544444444433 33344444444433
No 52
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=77.00 E-value=22 Score=30.43 Aligned_cols=30 Identities=3% Similarity=0.045 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008135 309 VERMRRELQAVERDIADAENARNEWESKTW 338 (576)
Q Consensus 309 i~r~~~Er~~L~~~l~~~e~~~~~l~~~~~ 338 (576)
+.++...++.++..+..+...+..+.....
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~ 32 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATIS 32 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555554444433
No 53
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=76.59 E-value=14 Score=24.53 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=25.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 301 LQTINARDVERMRRELQAVERDIADAENARNE 332 (576)
Q Consensus 301 ~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~ 332 (576)
.-++|+++..-+..|.+.|++.+..+...+..
T Consensus 14 kegfspeelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 14 KEGFSPEELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999888888888888776655543
No 54
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=76.15 E-value=22 Score=34.01 Aligned_cols=10 Identities=10% Similarity=-0.247 Sum_probs=4.6
Q ss_pred HhhhHHHHHH
Q 008135 335 SKTWDLDSKL 344 (576)
Q Consensus 335 ~~~~~~e~~l 344 (576)
...|++-..+
T Consensus 13 ~~~~~Y~~q~ 22 (243)
T 2a01_A 13 DLATVYVDVL 22 (243)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455544433
No 55
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=76.00 E-value=71 Score=32.36 Aligned_cols=66 Identities=9% Similarity=0.137 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 394 LKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQ 459 (576)
Q Consensus 394 ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~e 459 (576)
++-.|.+...++..+|.++.+.+..+++...+....+....+.+..-++.....+..|.+.-.+++
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe 119 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLR 119 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 333444445555555555555555555544444444444444444444444444444444443333
No 56
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=75.95 E-value=12 Score=25.34 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 255 AIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (576)
Q Consensus 255 ~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l 299 (576)
+|+..++.+...++.+..++++.+ ..|+.|+.-|.+.+
T Consensus 3 aYl~eLE~r~k~le~~naeLEerv-------stLq~EN~mLRqvl 40 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERL-------STLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHh
Confidence 688888888888888888876655 44556666665544
No 57
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=75.22 E-value=23 Score=27.63 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (576)
Q Consensus 256 ~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~ 300 (576)
-+..++.+...|+.++..++..++....+...++.|+..+...++
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld 58 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLD 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555566666666666666666666666666666654443
No 58
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.01 E-value=32 Score=27.92 Aligned_cols=14 Identities=7% Similarity=0.292 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 008135 440 LQFHINEMETQLNL 453 (576)
Q Consensus 440 Le~kl~~l~~ql~~ 453 (576)
|+.++...+.++..
T Consensus 17 le~~~~~~~~e~~~ 30 (97)
T 2eqb_B 17 LKRELSDRDDEVKR 30 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHH
Confidence 33333333333333
No 59
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=75.00 E-value=38 Score=28.72 Aligned_cols=46 Identities=15% Similarity=0.253 Sum_probs=25.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008135 430 IEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTE 479 (576)
Q Consensus 430 ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~ 479 (576)
..+....+.+|..++..|+++++.-+...+ ....+.+.++.+++.+
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q----~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLRQ----QAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 444555566666666666666666554322 2223444555555554
No 60
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=74.40 E-value=77 Score=33.00 Aligned_cols=20 Identities=40% Similarity=0.581 Sum_probs=12.1
Q ss_pred ccccccccCCCCCChHHHHHHH
Q 008135 128 INKSTLRSPNSPHNWPAYLALI 149 (576)
Q Consensus 128 i~ks~l~~~g~~h~wp~~l~~L 149 (576)
.+|..+. ..|.||-.++.+.
T Consensus 131 YNkdl~~--~~P~Twdel~~~a 150 (471)
T 3mq9_A 131 YNKDLLP--NPPKTWEEIPALD 150 (471)
T ss_dssp EETTTCS--SCCSBGGGHHHHH
T ss_pred EEhHHhc--CCCCCHHHHHHHH
Confidence 4455554 3467888776643
No 61
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=74.14 E-value=42 Score=28.92 Aligned_cols=89 Identities=13% Similarity=0.190 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 253 FNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL---QTINARDVERMRRELQAVERDIADAENA 329 (576)
Q Consensus 253 ~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~---Q~~s~~di~r~~~Er~~L~~~l~~~e~~ 329 (576)
|+.+++--+.........+......+......+..|.....++...+.. .|+++.++...+.=+..|...|......
T Consensus 10 L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~ 89 (150)
T 3ajw_A 10 LETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRLQ 89 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555566667777777777777777888777777766653 5778888877777777777777766555
Q ss_pred HHHHHHhhhHHH
Q 008135 330 RNEWESKTWDLD 341 (576)
Q Consensus 330 ~~~l~~~~~~~e 341 (576)
+..++..+....
T Consensus 90 l~~~~~~~e~~r 101 (150)
T 3ajw_A 90 LTQWTQKVDLAL 101 (150)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555444333
No 62
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=73.67 E-value=24 Score=31.06 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 008135 314 RELQAVERDIADAENARNEWESKTWDLDSKL 344 (576)
Q Consensus 314 ~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l 344 (576)
+...-+..+++.++......+.++.+++-.+
T Consensus 80 RKl~~~E~dLeraeeRae~aE~k~~eLEeeL 110 (147)
T 2b9c_A 80 RKLVIIESDLERAEERAELSEGKCAELEEEL 110 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666666665543
No 63
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=73.58 E-value=60 Score=32.89 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=8.2
Q ss_pred cccchhhhhchHHHHH
Q 008135 384 EVMGVDYKSTLKPALE 399 (576)
Q Consensus 384 ei~~~~~k~~ik~~L~ 399 (576)
+++..+||.+...++.
T Consensus 215 d~vP~~fKsq~q~a~~ 230 (390)
T 1deq_A 215 GPVPREFKSQLQEAPL 230 (390)
T ss_pred ccCChhhcccccccch
Confidence 3355666655444433
No 64
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.43 E-value=35 Score=27.68 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 008135 283 EEHKRICEENEEFKK 297 (576)
Q Consensus 283 ~e~~~l~~e~~eL~~ 297 (576)
.+...+..|+++|..
T Consensus 47 ~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 47 EEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 65
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=72.94 E-value=40 Score=28.11 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 492 EVLKASESKFQEAIRQCEEEIQIRALDLF 520 (576)
Q Consensus 492 ~el~~~~~~~ee~~~e~eeek~~l~~el~ 520 (576)
.-+...+.+|..+. |...-|..+|.
T Consensus 77 ~SLeD~E~k~n~ai----ErnalLE~El~ 101 (111)
T 2v66_B 77 VSLEDFEQRLNQAI----ERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 44555566666655 44444444444
No 66
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=71.95 E-value=43 Score=27.98 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008135 285 HKRICEENEEFKKRVKLQTINARDVERMRRELQAV 319 (576)
Q Consensus 285 ~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L 319 (576)
++.++.|+..|...|.+. .++++++.++...+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a---~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDA---SAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHhhchhh
Confidence 344444444444443333 23444444444433
No 67
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=70.76 E-value=25 Score=27.35 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008135 249 DLNKFNAIIGELNMRKEKMEKL 270 (576)
Q Consensus 249 D~~K~~~~i~~l~~~~~~~e~~ 270 (576)
--.|++..+..++.....+++.
T Consensus 40 G~~KL~~mi~~l~~E~~~l~~n 61 (78)
T 3iv1_A 40 GHQKLEEMVTRLDQEVAEVDKN 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333
No 68
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=70.41 E-value=12 Score=28.67 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135 418 SLQQQSSEMAAKIEGKRKRIDALQFHIN 445 (576)
Q Consensus 418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~ 445 (576)
..+..+..+...+.+++..|..|+.+++
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 69
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=70.06 E-value=17 Score=27.89 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 267 MEKLVEEKEREIGKKVEEHKRICEENEEF 295 (576)
Q Consensus 267 ~e~~l~~l~~Ele~~~~e~~~l~~e~~eL 295 (576)
.+..|.+++.+|..+..++..|+.+...+
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444433
No 70
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=67.98 E-value=22 Score=28.83 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 436 RIDALQFHINEMETQLNLLSKETQ 459 (576)
Q Consensus 436 ~l~~Le~kl~~l~~ql~~lk~e~e 459 (576)
.++.|+..+.+++..|......++
T Consensus 20 ~~~~LE~~l~e~E~~~~~e~~~~q 43 (95)
T 3mov_A 20 ESRACLERIQELEDLLAKEKDNSR 43 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333
No 71
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=67.77 E-value=64 Score=33.35 Aligned_cols=39 Identities=10% Similarity=0.155 Sum_probs=19.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 234 TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVE 272 (576)
Q Consensus 234 ~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~ 272 (576)
+..+...++.+.+..++.+++..+...+..+..++..+.
T Consensus 77 d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~ 115 (409)
T 1m1j_C 77 QSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHI 115 (409)
T ss_dssp SCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 334444445555555555555555554444444444333
No 72
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=67.70 E-value=6.3 Score=28.40 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=27.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008135 298 RVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT 337 (576)
Q Consensus 298 ~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~ 337 (576)
-+...+-++.|++.+..|...|+..++.+..+..++..+.
T Consensus 10 ~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 10 HLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455678899999999988888888887777776654
No 73
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=67.38 E-value=54 Score=27.36 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 494 LKASESKFQEAIRQCEEEIQIRALDL 519 (576)
Q Consensus 494 l~~~~~~~ee~~~e~eeek~~l~~el 519 (576)
|..+++.+..++....+....|....
T Consensus 61 L~~Lqq~fsq~q~~vq~qL~~Lt~~R 86 (112)
T 1x79_B 61 LEELQQGLSQAKRDVQEQMAVLMQSR 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 74
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=67.34 E-value=33 Score=24.88 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 252 KFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (576)
Q Consensus 252 K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~ 298 (576)
+++..+.............+......+......++.+..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433444444444444444444444444444444444443
No 75
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=65.77 E-value=34 Score=24.46 Aligned_cols=42 Identities=2% Similarity=0.077 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135 261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ 302 (576)
Q Consensus 261 ~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q 302 (576)
......+-.++..|..++.+...+....+.|-.+-..+|+++
T Consensus 10 ss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlDN~ 51 (52)
T 1jcd_A 10 SSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRADNA 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 333333334444444444444444455555555555665543
No 76
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=65.25 E-value=26 Score=36.96 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 271 VEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARN 331 (576)
Q Consensus 271 l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~ 331 (576)
+.++.++......++++++.++..+.++|....-+.++.+.+..+...|...+..++....
T Consensus 33 ~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (455)
T 2dq0_A 33 ILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVE 93 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555666666666666654322234455555555555555554444433
No 77
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=65.20 E-value=1.1e+02 Score=31.89 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 008135 311 RMRRELQAVERDIA 324 (576)
Q Consensus 311 r~~~Er~~L~~~l~ 324 (576)
.+..++++|+.+|+
T Consensus 143 ~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 143 EQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555555554
No 78
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=65.02 E-value=48 Score=25.88 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008135 409 SVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNL 453 (576)
Q Consensus 409 ~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~ 453 (576)
+..+..+...|+.++..+...+++.+.+=..++..+..+-..++.
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~ 59 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDV 59 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334444444444444444444444444444444444444433
No 79
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=64.90 E-value=48 Score=25.85 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (576)
Q Consensus 246 L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l 299 (576)
|-.++..+.--|..+++...+++.+|..-+.|+.....++..-..++..|+.++
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333344444444445555555555555555555444444444444555554443
No 80
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=64.85 E-value=37 Score=30.91 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLS 455 (576)
Q Consensus 416 ~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk 455 (576)
+.+|+.++..++..++.+..++++|+.+++.++.+.....
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4467777777777777888888888888887777765433
No 81
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=64.18 E-value=1.7e+02 Score=31.83 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=30.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008135 426 MAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEA 480 (576)
Q Consensus 426 l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~ 480 (576)
-...+++.+.+..+++.+...++.......+-+++........+..|++.|+...
T Consensus 485 ~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~ 539 (592)
T 1f5n_A 485 KEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDR 539 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555555555555555555566777777777754
No 82
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=63.91 E-value=1.2e+02 Score=31.21 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=27.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 230 MTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKL 270 (576)
Q Consensus 230 ~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~ 270 (576)
...|+..+.+-++.+.+.+++.+++..+....+.+..++..
T Consensus 73 ~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~ 113 (411)
T 3ghg_C 73 SSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEI 113 (411)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34556677777777777778888877777766666555554
No 83
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=63.64 E-value=90 Score=29.16 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccc
Q 008135 513 QIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSI 565 (576)
Q Consensus 513 ~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~~~ 565 (576)
..+..+|..++|.+++....... +.-...|.+-+.-|...|..+|. ++|+
T Consensus 109 e~~~~~LLpVlDnlerAl~~~~~--~~~~~~l~eGvemi~k~l~~~L~-k~Gv 158 (213)
T 4ani_A 109 QSLASDLLPVLDNFERALKIETD--NEQAKSILQGMEMVYRSLVDALK-KEGV 158 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSC--CSTHHHHHHHHHHHHHHHHHHHH-HTTE
T ss_pred HHHHHHHhHHHHHHHHHHHhccc--cccHHHHHHHHHHHHHHHHHHHH-HCCC
Confidence 45556666666666555321100 00112377788888888988885 6788
No 84
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=62.78 E-value=80 Score=27.73 Aligned_cols=45 Identities=20% Similarity=0.103 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008135 409 SVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNL 453 (576)
Q Consensus 409 ~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~ 453 (576)
+..+..++..++..+.++...+.++...+..++..+..+..++..
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~ 114 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNV 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555544444444444444444444444433
No 85
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=62.51 E-value=14 Score=28.21 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 008135 256 IIGELNMRKEKMEKL 270 (576)
Q Consensus 256 ~i~~l~~~~~~~e~~ 270 (576)
||..|+.++..++..
T Consensus 30 ~i~~LE~~v~~le~~ 44 (70)
T 1gd2_E 30 HLKALETQVVTLKEL 44 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444333333
No 86
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=61.97 E-value=35 Score=35.53 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 271 VEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENAR 330 (576)
Q Consensus 271 l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~ 330 (576)
+..+.++......+.++++.++..+.++|.. -+.++.+.+..+...+...+..++...
T Consensus 30 ~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (421)
T 1ses_A 30 LLALDREVQELKKRLQEVQTERNQVAKRVPK--APPEEKEALIARGKALGEEAKRLEEAL 87 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS--SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556667777777888777765 344566555555555555555444443
No 87
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=61.94 E-value=74 Score=27.04 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLV 271 (576)
Q Consensus 235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l 271 (576)
..+.+++....-+..+-++.+-...++....+.+..+
T Consensus 47 KVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~L 83 (167)
T 4gkw_A 47 KVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLL 83 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4555555555555555555555555554444444333
No 88
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=61.34 E-value=57 Score=25.58 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=21.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008135 431 EGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKME 473 (576)
Q Consensus 431 eek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~ 473 (576)
+..++..++|+..+..++..+......++.....+.+++..++
T Consensus 4 ~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r 46 (84)
T 1gk4_A 4 DALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 46 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666665555544444333333333333
No 89
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=60.26 E-value=35 Score=27.68 Aligned_cols=45 Identities=20% Similarity=0.417 Sum_probs=31.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHH
Q 008135 208 EKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNA 255 (576)
Q Consensus 208 ~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~ 255 (576)
-...+..++..|++++..||.+.+ ....|+.+-.-|..+++.|.+
T Consensus 48 t~~eL~~EI~~L~~eI~~LE~iqs---~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 48 TQKHLEEEIARLSKEIDQLEKMQN---NSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHH
Confidence 334566677777777777776433 566777777778888888854
No 90
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=59.79 E-value=1.2e+02 Score=28.76 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=12.2
Q ss_pred hhhhchHHHHHHHHHHHHHHHHH
Q 008135 389 DYKSTLKPALESFADDVKRSSVE 411 (576)
Q Consensus 389 ~~k~~ik~~L~~l~~ei~~~~~~ 411 (576)
+++..+.|-..++...+.....+
T Consensus 92 e~r~~l~Py~~el~~~~~~~~ee 114 (243)
T 2a01_A 92 EVKAKVQPYLDDFQKKWQEEMEL 114 (243)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHH
Confidence 44555666666665554443333
No 91
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=59.55 E-value=51 Score=25.70 Aligned_cols=35 Identities=9% Similarity=0.023 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 251 NKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEH 285 (576)
Q Consensus 251 ~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~ 285 (576)
.+...-.-..+++..+.+.+..++..+++.++.++
T Consensus 34 s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ 68 (81)
T 1wt6_A 34 EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERM 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444433333
No 92
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=59.53 E-value=21 Score=23.21 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 270 LVEEKEREIGKKVEEHKRICEENEEFK 296 (576)
Q Consensus 270 ~l~~l~~Ele~~~~e~~~l~~e~~eL~ 296 (576)
....+..+++.+..++..|+.++.+|+
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345567778888888888888888875
No 93
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=59.33 E-value=56 Score=25.82 Aligned_cols=30 Identities=10% Similarity=0.195 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 432 GKRKRIDALQFHINEMETQLNLLSKETQEI 461 (576)
Q Consensus 432 ek~~~l~~Le~kl~~l~~ql~~lk~e~eee 461 (576)
..++.++.|+..+.+++..|......++..
T Consensus 7 ~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~ 36 (86)
T 1x8y_A 7 QLQCQLAAKEAKLRDLEDSLARERDTSRRL 36 (86)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555554444433333
No 94
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=59.23 E-value=19 Score=28.96 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=22.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135 429 KIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQT 478 (576)
Q Consensus 429 ~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~ 478 (576)
++...-.++..+...+-+|+...-.+|+.++++ |..|+.+++.
T Consensus 44 ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeE-------I~rLr~eLe~ 86 (92)
T 3vp9_A 44 KMNQQLAEMQQIRNTVYERELTHRKMKDAYEEE-------IKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 333334444445555555555555556555555 5555555554
No 95
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=59.11 E-value=29 Score=30.47 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008135 420 QQQSSEMAAKIEGKRKRIDALQFHINE 446 (576)
Q Consensus 420 q~~l~~l~~~ieek~~~l~~Le~kl~~ 446 (576)
...++.+...+..++.++..++..+++
T Consensus 111 ~~~l~~l~~~l~~l~~~i~~~~~~l~~ 137 (151)
T 2zdi_C 111 DEAIKKTQGALAELEKRIGEVARKAQE 137 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444433
No 96
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=58.65 E-value=21 Score=37.82 Aligned_cols=21 Identities=5% Similarity=-0.078 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhccccccccc
Q 008135 544 ISETALTVSEAYKNSLPAQFSI 565 (576)
Q Consensus 544 ~~~~~~~i~~~f~~~~~~~~~~ 565 (576)
..+.+..+.+.|.++|.+ ||+
T Consensus 312 s~~e~e~ml~~~e~il~~-LgL 332 (485)
T 3qne_A 312 SWEEFDRMIGCSEEFYQS-LGL 332 (485)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHHHHHHHHHH-CCC
Confidence 555556666666666643 555
No 97
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=56.91 E-value=24 Score=21.74 Aligned_cols=26 Identities=38% Similarity=0.633 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 245 VLEEDLNKFNAIIGELNMRKEKMEKL 270 (576)
Q Consensus 245 ~L~~D~~K~~~~i~~l~~~~~~~e~~ 270 (576)
.|+.|+.+++..+..++.+...++..
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777776666555443
No 98
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=56.85 E-value=1.1e+02 Score=29.23 Aligned_cols=37 Identities=8% Similarity=0.004 Sum_probs=27.1
Q ss_pred HHHHHHHhhhCCCCC------CCCCC-CCCCHHHHHHHHHHHHH
Q 008135 65 IRAINAHLSSHSFHI------AFPLK-QVPSVKDITDVIKFLIS 101 (576)
Q Consensus 65 ~~~i~~fL~~~~~~~------~~k~l-~~pt~k~f~~i~~~L~~ 101 (576)
...|+.+|.+.|+++ +...| .+||...+..||..+..
T Consensus 16 ~~eIv~~L~~~~i~~~~~~n~t~~DL~~~Ptp~~v~~iy~~~l~ 59 (250)
T 2ve7_C 16 VAEIVIHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRALQ 59 (250)
T ss_dssp HHHHHHHHHHHTCCHHHHHTCCGGGTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccccCCCHHHHhcCCCHHHHHHHHHHHHH
Confidence 467888888888873 34456 68998777777766666
No 99
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=56.70 E-value=47 Score=27.11 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 270 LVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (576)
Q Consensus 270 ~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~ 301 (576)
.+..+..+++..+.+...|.++++.|..++..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666666677777777777766
No 100
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=56.24 E-value=73 Score=25.17 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 434 RKRIDALQFHINEMETQLNLLSKETQEIT 462 (576)
Q Consensus 434 ~~~l~~Le~kl~~l~~ql~~lk~e~eee~ 462 (576)
..+.+.|..+++.+....+..+..++++.
T Consensus 13 ~~e~~~l~~e~dn~~~~~edfk~KyE~E~ 41 (86)
T 3swk_A 13 TNDKARVEVERDNLAEDIMRLREKLQEEM 41 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443
No 101
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=55.94 E-value=52 Score=23.39 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008135 413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINE 446 (576)
Q Consensus 413 ~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~ 446 (576)
..++..|..+...+...+.+.+.+|..|...++.
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555554444444443
No 102
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=54.74 E-value=82 Score=25.32 Aligned_cols=19 Identities=0% Similarity=-0.039 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008135 316 LQAVERDIADAENARNEWE 334 (576)
Q Consensus 316 r~~L~~~l~~~e~~~~~l~ 334 (576)
|+++....+.+...+..++
T Consensus 63 REkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 63 REKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 3333333333333333333
No 103
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=54.51 E-value=2.1e+02 Score=29.97 Aligned_cols=7 Identities=14% Similarity=0.093 Sum_probs=2.9
Q ss_pred ccccccc
Q 008135 559 LPAQFSI 565 (576)
Q Consensus 559 ~~~~~~~ 565 (576)
|-+.+|+
T Consensus 286 Fi~~~gt 292 (486)
T 3haj_A 286 FRANHGP 292 (486)
T ss_dssp HHHHHST
T ss_pred HHHHhCC
Confidence 3444443
No 104
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=54.16 E-value=1.1e+02 Score=26.54 Aligned_cols=65 Identities=14% Similarity=0.269 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHH
Q 008135 279 GKKVEEHKRICEENEEFKKRVKLQTI--NARDVERMRRELQAVERDIADAENARNEWE---SKTWDLDSK 343 (576)
Q Consensus 279 e~~~~e~~~l~~e~~eL~~~l~~Q~~--s~~di~r~~~Er~~L~~~l~~~e~~~~~l~---~~~~~~e~~ 343 (576)
........+|+.=++.|+.-|...|+ ++..++.+.+++..+..+|..++.-+.... +++|+.|+.
T Consensus 24 d~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~ 93 (141)
T 3okq_A 24 DTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELD 93 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHH
Confidence 33444556666777788888888776 567777788888888888877766555444 577776653
No 105
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=54.16 E-value=36 Score=26.50 Aligned_cols=41 Identities=17% Similarity=0.059 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008135 410 VEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQ 450 (576)
Q Consensus 410 ~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~q 450 (576)
.++...+--+++.+++++..+.+....|..|+.++..|..+
T Consensus 17 ~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 17 VELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444455544444444444444444444333
No 106
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=53.31 E-value=1.3e+02 Score=27.50 Aligned_cols=11 Identities=27% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 008135 529 YKERMESKISK 539 (576)
Q Consensus 529 ~K~~i~~~i~~ 539 (576)
++..+...+++
T Consensus 166 lk~~l~~~vee 176 (191)
T 1nfn_A 166 AREGAERGLSA 176 (191)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 107
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=52.98 E-value=79 Score=25.96 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 008135 317 QAVERDIADAENAR 330 (576)
Q Consensus 317 ~~L~~~l~~~e~~~ 330 (576)
..+...+..++..+
T Consensus 80 e~ie~~i~~le~~~ 93 (117)
T 2zqm_A 80 ETLEVRLNALERQE 93 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 108
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=52.70 E-value=46 Score=32.95 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENAR 330 (576)
Q Consensus 269 ~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~ 330 (576)
..+..++.++...+.++...+.+.++.+.-.+..-+|..+++....+....+..+..++..+
T Consensus 76 a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l 137 (341)
T 3fpp_A 76 ATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQI 137 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555556666677777777788888888877766665555555444433
No 109
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=52.07 E-value=1.5e+02 Score=27.58 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 008135 211 NVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEED-LNKFNAIIGELNMRKEKMEKLVE 272 (576)
Q Consensus 211 ~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D-~~K~~~~i~~l~~~~~~~e~~l~ 272 (576)
.+.++...|+..+.++.+ .++.+-..+..++.| +.||-.++++=..||.+++++|.
T Consensus 143 ~L~~e~~~l~~~~~~l~~------qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll 199 (213)
T 1ik9_A 143 HLQKENERLLRDWNDVQG------RFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLL 199 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444444444432 455555566667777 57898888888888888775553
No 110
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=51.99 E-value=40 Score=28.65 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008135 493 VLKASESKFQEAIRQCEEEIQI 514 (576)
Q Consensus 493 el~~~~~~~ee~~~e~eeek~~ 514 (576)
-|..++..|.-+-+++++..+.
T Consensus 84 kLAqLQ~AY~~LfqeYd~~lK~ 105 (130)
T 3cl3_D 84 KLAQLQVAYHQLFQEYDNHIKS 105 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777765443
No 111
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=51.46 E-value=79 Score=24.16 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (576)
Q Consensus 261 ~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~ 298 (576)
+.+...|+.++..++..++....+...++.|+..+...
T Consensus 13 E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 13 EIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555444443
No 112
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=51.35 E-value=81 Score=24.26 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 008135 306 ARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKL 344 (576)
Q Consensus 306 ~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l 344 (576)
++-|+++..|+..|+..+......+..++.++.+++-++
T Consensus 36 I~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 36 IAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888888888888888888888887777654
No 113
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=51.20 E-value=49 Score=25.68 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (576)
Q Consensus 257 i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l 299 (576)
+..++.++.-.+..|.+|...+-....++..++..+..|..++
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444433
No 114
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=51.01 E-value=40 Score=36.58 Aligned_cols=60 Identities=10% Similarity=0.158 Sum_probs=25.9
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 229 AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRI 288 (576)
Q Consensus 229 l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l 288 (576)
|.......+..+.+...|+..+..++.-....+......+.....|.+++...+.+.+.|
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l 382 (575)
T 2i1j_A 323 LQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEEL 382 (575)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666666666666555555555555555544433333333
No 115
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=50.96 E-value=1e+02 Score=25.18 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008135 418 SLQQQSSEMAAKIEGKRKRIDALQFH 443 (576)
Q Consensus 418 ~Lq~~l~~l~~~ieek~~~l~~Le~k 443 (576)
.+..+++.+.......+.++..|+.+
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444333333333333333333
No 116
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=50.73 E-value=22 Score=28.13 Aligned_cols=15 Identities=13% Similarity=0.022 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHH
Q 008135 348 FKELEALSMECNQAM 362 (576)
Q Consensus 348 ~e~le~l~~~yn~~~ 362 (576)
++.--.++.+||.+.
T Consensus 40 ~~~hI~~Lh~YNeiK 54 (85)
T 3viq_B 40 VQKHIDLLHTYNEIR 54 (85)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHH
Confidence 444456778888764
No 117
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=50.12 E-value=1.5e+02 Score=30.62 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008135 311 RMRRELQAVERDIADAENARNEWESKTW 338 (576)
Q Consensus 311 r~~~Er~~L~~~l~~~e~~~~~l~~~~~ 338 (576)
.|..++.+++..+...+..+..|+....
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~ 115 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHI 115 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 118
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=50.09 E-value=1.3e+02 Score=27.14 Aligned_cols=39 Identities=5% Similarity=0.310 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 008135 287 RICEENEEFKKRVKLQTINARDVERMRRELQAVERDIAD 325 (576)
Q Consensus 287 ~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~ 325 (576)
++.....+|+..+..-+++.+.|..+..|+..|+.++..
T Consensus 93 ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 93 QLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777888899999999999999888877753
No 119
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=49.84 E-value=25 Score=22.77 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008135 312 MRRELQAVERDIADAENARNEWESKTW 338 (576)
Q Consensus 312 ~~~Er~~L~~~l~~~e~~~~~l~~~~~ 338 (576)
|.++....+.+|++++.+..-|++++.
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 556666777777777777666666543
No 120
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=49.80 E-value=54 Score=34.92 Aligned_cols=24 Identities=4% Similarity=0.101 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 308 DVERMRRELQAVERDIADAENARN 331 (576)
Q Consensus 308 di~r~~~Er~~L~~~l~~~e~~~~ 331 (576)
+++.+..+...|...+..++....
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~ 140 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEA 140 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554444433
No 121
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=49.21 E-value=92 Score=24.25 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008135 269 KLVEEKEREIGKKVEEHKRICEE 291 (576)
Q Consensus 269 ~~l~~l~~Ele~~~~e~~~l~~e 291 (576)
..|..++..|+.+..+++.++.+
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 44555555555555555555544
No 122
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=49.10 E-value=1e+02 Score=24.80 Aligned_cols=22 Identities=5% Similarity=0.173 Sum_probs=10.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHH
Q 008135 303 TINARDVERMRRELQAVERDIA 324 (576)
Q Consensus 303 ~~s~~di~r~~~Er~~L~~~l~ 324 (576)
..++.+...+......|...-+
T Consensus 74 ~~~~~~~~~i~~~l~~l~~rw~ 95 (118)
T 3uul_A 74 TLSDEEEFEIQEQMTLLNARWE 95 (118)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHH
Confidence 4455555554444444443333
No 123
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.67 E-value=63 Score=27.85 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 008135 286 KRICEENEEF 295 (576)
Q Consensus 286 ~~l~~e~~eL 295 (576)
..+..|+++|
T Consensus 70 ~~ie~ElE~L 79 (135)
T 2e7s_A 70 DKLNKEVEDL 79 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 124
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=48.56 E-value=2.2e+02 Score=28.48 Aligned_cols=17 Identities=6% Similarity=0.309 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008135 307 RDVERMRRELQAVERDI 323 (576)
Q Consensus 307 ~di~r~~~Er~~L~~~l 323 (576)
.++.++..++..|+..+
T Consensus 226 k~~~~~~~ei~~l~~~i 242 (346)
T 2nrj_A 226 DNLGKLEPLLAELRQTV 242 (346)
T ss_dssp GGHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555554433
No 125
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=48.04 E-value=97 Score=24.21 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008135 439 ALQFHINEMETQLNLLSKETQ 459 (576)
Q Consensus 439 ~Le~kl~~l~~ql~~lk~e~e 459 (576)
++......++..+.......+
T Consensus 5 ~l~~~~~sLE~~l~e~e~~~~ 25 (84)
T 1gk4_A 5 ALKGTNESLERQMREMEENFA 25 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334333333333333
No 126
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=47.91 E-value=2.6e+02 Score=29.05 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 395 KPALESFADDVKRSSVEKLEELISLQQ 421 (576)
Q Consensus 395 k~~L~~l~~ei~~~~~~~~~e~~~Lq~ 421 (576)
+-.|.+-..++..+|.++...+..+++
T Consensus 53 qglL~kqerdv~~rI~kLkn~L~~~s~ 79 (491)
T 1m1j_A 53 QGIIDDTDQNYSQRIDNIRQQLADSQN 79 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 334444444455555555444444443
No 127
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=47.81 E-value=87 Score=24.73 Aligned_cols=29 Identities=17% Similarity=0.455 Sum_probs=17.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhccCCCC
Q 008135 206 EKEKENVSEYVEELKKKVSEMEGAMTGPT 234 (576)
Q Consensus 206 ~~~~~~~~~~~~~L~~~~~~le~l~~~~~ 234 (576)
...++.+...+..|+.++..|+...+.|+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~ 49 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADAS 49 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 44556666666677777777666544443
No 128
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=47.56 E-value=2.2e+02 Score=28.18 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008135 442 FHINEMETQLNLLSKETQ 459 (576)
Q Consensus 442 ~kl~~l~~ql~~lk~e~e 459 (576)
..+.+....|+...++.+
T Consensus 157 ~~l~KaKk~Y~~~c~e~e 174 (350)
T 3aco_A 157 KEVEAAKKAHHAACKEEK 174 (350)
T ss_dssp HHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444555554443
No 129
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=47.34 E-value=1.5e+02 Score=26.09 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=0.0
Q ss_pred HHHcCCC
Q 008135 185 NYIEGKD 191 (576)
Q Consensus 185 ~fl~g~d 191 (576)
-|+.|.+
T Consensus 14 ~~~~~~~ 20 (152)
T 4fla_A 14 LYFQGAG 20 (152)
T ss_dssp -------
T ss_pred CCCCCCC
Confidence 4667776
No 130
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.99 E-value=1e+02 Score=26.61 Aligned_cols=29 Identities=7% Similarity=0.228 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008135 415 ELISLQQQSSEMAAKIEGKRKRIDALQFH 443 (576)
Q Consensus 415 e~~~Lq~~l~~l~~~ieek~~~l~~Le~k 443 (576)
++..+..+++.+...+.....++..|...
T Consensus 26 ~le~l~~~l~~l~~~l~~~~~e~~~L~~~ 54 (135)
T 2e7s_A 26 NYNQLKEDYNTLKRELSDRDDEVKRLRED 54 (135)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33344445555544444444444444333
No 131
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=46.99 E-value=1.2e+02 Score=24.86 Aligned_cols=18 Identities=6% Similarity=0.141 Sum_probs=7.4
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 008135 205 LEKEKENVSEYVEELKKK 222 (576)
Q Consensus 205 l~~~~~~~~~~~~~L~~~ 222 (576)
+...+..+..++..++..
T Consensus 18 l~~~~~~l~~q~~~l~~~ 35 (117)
T 2zqm_A 18 YQQQLQLVVQQKQKVQLE 35 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 132
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=46.97 E-value=74 Score=24.15 Aligned_cols=41 Identities=10% Similarity=0.053 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 255 AIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (576)
Q Consensus 255 ~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL 295 (576)
++...-+.++..++.++..++........+...|...+..|
T Consensus 22 afReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 22 AFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666666666666554443333333333333333
No 133
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=46.82 E-value=1.1e+02 Score=27.55 Aligned_cols=13 Identities=8% Similarity=0.514 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 008135 527 SKYKERMESKISK 539 (576)
Q Consensus 527 ~k~K~~i~~~i~~ 539 (576)
+.++.++...|++
T Consensus 169 ee~k~kl~~~lee 181 (185)
T 3r2p_A 169 DELRQRLAARLEA 181 (185)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 134
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.82 E-value=1.5e+02 Score=26.09 Aligned_cols=19 Identities=11% Similarity=0.340 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008135 440 LQFHINEMETQLNLLSKET 458 (576)
Q Consensus 440 Le~kl~~l~~ql~~lk~e~ 458 (576)
+.......+.++..+..++
T Consensus 49 l~~~~~~~~~e~~~L~~~l 67 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDI 67 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHH
Confidence 3333333334444443333
No 135
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=46.45 E-value=1.2e+02 Score=24.79 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 242 EKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300 (576)
Q Consensus 242 ~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~ 300 (576)
++.+|.=.+.-+...++.++....++.+...+...+++........++.+...|+.+|.
T Consensus 24 EKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 24 EKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444444444444444444444443
No 136
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=46.35 E-value=3.1e+02 Score=29.61 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135 263 RKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ 302 (576)
Q Consensus 263 ~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q 302 (576)
.+-...+.|.+.+++++......+.++++.+.|......+
T Consensus 474 ~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~ 513 (592)
T 1f5n_A 474 AILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKN 513 (592)
T ss_dssp HHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555566655555566666666665554443
No 137
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=46.31 E-value=83 Score=22.91 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008135 416 LISLQQQSSEMAAKIEG 432 (576)
Q Consensus 416 ~~~Lq~~l~~l~~~iee 432 (576)
...|+..++.+.....+
T Consensus 24 ~~~Le~~~~~L~~~n~~ 40 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQ 40 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444333333
No 138
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=45.93 E-value=20 Score=38.95 Aligned_cols=63 Identities=6% Similarity=0.112 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR 298 (576)
Q Consensus 236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~ 298 (576)
...++.+...++.+..+.+.-+...+..+..++.+....++|-+........+++++.+|...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~ 399 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEET 399 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666666666666655555555555555666665543
No 139
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=45.86 E-value=1.2e+02 Score=24.44 Aligned_cols=106 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH----HHHH
Q 008135 249 DLNKFNAIIGELNMRKEKMEKLVEEKE------REIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRR----ELQA 318 (576)
Q Consensus 249 D~~K~~~~i~~l~~~~~~~e~~l~~l~------~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~----Er~~ 318 (576)
|+.+|..-++.+..=+.+.+..+.... ..++..-.+.+.+..++..-+..|..-.-....+-.-.. ....
T Consensus 3 ~L~~F~~~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~ 82 (119)
T 3uun_A 3 NLDRYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETE 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008135 319 VERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354 (576)
Q Consensus 319 L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l 354 (576)
++..++.+......+...+.+....|...+..++..
T Consensus 83 i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~~~Q~~ 118 (119)
T 3uun_A 83 VQEQMNLLNSRWECLRVASMEKQSNLHRVLMDLQNQ 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 140
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=45.74 E-value=59 Score=32.56 Aligned_cols=57 Identities=4% Similarity=0.062 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 273 EKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENA 329 (576)
Q Consensus 273 ~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~ 329 (576)
..+.++...+.++...+.+.++++.-....-+|..+++.........+..++.++..
T Consensus 81 ~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~ 137 (369)
T 4dk0_A 81 SYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQEN 137 (369)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555666666666667777777777666665555555444333
No 141
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=45.66 E-value=53 Score=32.80 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008135 412 KLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEM 447 (576)
Q Consensus 412 ~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l 447 (576)
+.+++.+++..+......+..++..+..++.++.+|
T Consensus 10 ~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l 45 (323)
T 1lwu_C 10 ILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRL 45 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333333333333333333333333
No 142
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=45.45 E-value=1.2e+02 Score=24.31 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 008135 294 EFKKRVKLQTINARDVERMRRELQAVERDIADA------ENARNEWESKTWDLDSKLGRKFKELEALSME 357 (576)
Q Consensus 294 eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~------e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~ 357 (576)
+|...+ .|+|.++|.++...|..|++..-.. -.+...|+....++...+.....+...+..+
T Consensus 10 eLN~~L--~gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e 77 (90)
T 2wt7_B 10 ELNRHL--RGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARE 77 (90)
T ss_dssp HHHTTC--TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--cCCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 4888888888888888777665433 2233444455555444444444444444433
No 143
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=44.55 E-value=56 Score=32.64 Aligned_cols=32 Identities=9% Similarity=0.100 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLVE 272 (576)
Q Consensus 241 ~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~ 272 (576)
++...|.+++.+++..+...+..+..++..+.
T Consensus 5 ~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~ 36 (323)
T 1lwu_C 5 KTVQKILEEVRILEQIGVSHDAQIQELSEMWR 36 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 34555555666655555555444444444443
No 144
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=44.40 E-value=2.9e+02 Score=28.68 Aligned_cols=144 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 210 ENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRIC 289 (576)
Q Consensus 210 ~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~ 289 (576)
+.++.....-..++.+.+.+.. ++...+.++..+++|+...++-+.......+..+..+..+.++-...+..+..+.
T Consensus 335 ~~ve~~Kki~naevae~~~lrQ---RlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~ 411 (602)
T 1cii_A 335 EDVEGDKKIYNAEVAEWDKLRQ---RLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGIN 411 (602)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHhhhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---------HHHHHHHHHHH
Q 008135 290 EENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFK---------ELEALSMECNQ 360 (576)
Q Consensus 290 ~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e---------~le~l~~~yn~ 360 (576)
+.+.+-+.. .-|...++..++-.-.-...+-++.-+.-..+++.+- +.+..+..||+
T Consensus 412 ~KiAE~KrK--------------~dE~~aIKDAVkfTAdFykkIsEkyGeKykkIAkELAe~fKGKKIRSvDDALaSfEK 477 (602)
T 1cii_A 412 QKIAEEKRK--------------QDELKATKDAINFTTEFLKSVSEKYGAKAEQLAREMAGQAKGKKIRNVEEALKTYEK 477 (602)
T ss_dssp HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHTTTTCBCCCHHHHHHHHHH
T ss_pred hHHHHHHHh--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCHHHHHHHHHH
Q ss_pred HHHHccCCcc
Q 008135 361 AMKRLKLATE 370 (576)
Q Consensus 361 ~~~kl~l~~d 370 (576)
....+.....
T Consensus 478 yk~NlnkKfn 487 (602)
T 1cii_A 478 YRADINKKIN 487 (602)
T ss_dssp THHHHTTSSC
T ss_pred HhcChhhhcc
No 145
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=44.10 E-value=1.1e+02 Score=23.90 Aligned_cols=28 Identities=11% Similarity=0.259 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008135 413 LEELISLQQQSSEMAAKIEGKRKRIDAL 440 (576)
Q Consensus 413 ~~e~~~Lq~~l~~l~~~ieek~~~l~~L 440 (576)
...+..++.++..+...+++...++..+
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333334444444444444433333333
No 146
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=43.94 E-value=1.3e+02 Score=24.41 Aligned_cols=26 Identities=23% Similarity=0.650 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 263 RKEKMEKLVEEKEREIGKKVEEHKRI 288 (576)
Q Consensus 263 ~~~~~e~~l~~l~~Ele~~~~e~~~l 288 (576)
+...++.+|.+++.+++......+.+
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl 41 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREAL 41 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444433333
No 147
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=43.65 E-value=1.1e+02 Score=24.60 Aligned_cols=47 Identities=6% Similarity=-0.088 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008135 434 RKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEA 480 (576)
Q Consensus 434 ~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~ 480 (576)
++.++.|+.+...++.++..+......+.......+..++.++...+
T Consensus 11 ~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r 57 (95)
T 3mov_A 11 ENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIR 57 (95)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544444444444444444444433
No 148
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=43.60 E-value=21 Score=37.21 Aligned_cols=58 Identities=10% Similarity=0.247 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 273 EKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENAR 330 (576)
Q Consensus 273 ~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~ 330 (576)
.+.++......++++++.++..+.++|....-+.++.+.+..+...+...+..++...
T Consensus 34 ~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 91 (425)
T 2dq3_A 34 ELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEEL 91 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555666677777777776533333444444455555555554444433
No 149
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=43.50 E-value=95 Score=22.81 Aligned_cols=24 Identities=13% Similarity=0.129 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 008135 413 LEELISLQQQSSEMAAKIEGKRKR 436 (576)
Q Consensus 413 ~~e~~~Lq~~l~~l~~~ieek~~~ 436 (576)
.+....|+.+++.+......+..+
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~e 45 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTE 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333333
No 150
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=42.75 E-value=2.4e+02 Score=27.22 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=4.2
Q ss_pred hhchHHHHHHH
Q 008135 391 KSTLKPALESF 401 (576)
Q Consensus 391 k~~ik~~L~~l 401 (576)
+..+...+..|
T Consensus 149 ~~kl~~~~e~L 159 (273)
T 3s84_A 149 QEKLNHQLEGL 159 (273)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 151
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=41.81 E-value=40 Score=23.85 Aligned_cols=13 Identities=23% Similarity=0.036 Sum_probs=5.7
Q ss_pred CChHHHHHHHHHH
Q 008135 233 PTEREKLEKEKCV 245 (576)
Q Consensus 233 ~~~l~~l~~~~~~ 245 (576)
..+++.|.++...
T Consensus 24 ggrieelkkkwee 36 (67)
T 1lq7_A 24 GGRIEELKKKWEE 36 (67)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 3444444444433
No 152
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=41.80 E-value=75 Score=21.38 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 008135 246 LEEDLNKFNAIIGELN 261 (576)
Q Consensus 246 L~~D~~K~~~~i~~l~ 261 (576)
|+.|-+.+...|.++.
T Consensus 22 lerdeqnlekiianlr 37 (52)
T 3he5_B 22 LERDEQNLEKIIANLR 37 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHHHHHHHHH
Confidence 3333333333333333
No 153
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=41.59 E-value=57 Score=22.29 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=10.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 008135 429 KIEGKRKRIDALQFHINEMETQL 451 (576)
Q Consensus 429 ~ieek~~~l~~Le~kl~~l~~ql 451 (576)
.-++.+.++.+|+.+++.+.+.+
T Consensus 17 r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 17 RSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555444433
No 154
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=40.72 E-value=1.6e+02 Score=24.54 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 418 SLQQQSSEMAAKIEGKRKRID-ALQFHINEMETQLNLLSKETQEITK 463 (576)
Q Consensus 418 ~Lq~~l~~l~~~ieek~~~l~-~Le~kl~~l~~ql~~lk~e~eee~~ 463 (576)
+|+...+.+...-++++.++. .++.++.++...|+.+-++++.+-.
T Consensus 43 RLr~~~d~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe~ese~~ 89 (115)
T 3vem_A 43 KLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRRKFHEVEAEHN 89 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444454444432 3455556666666666666554433
No 155
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=40.54 E-value=2.5e+02 Score=26.81 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 008135 308 DVERMRRELQAVE 320 (576)
Q Consensus 308 di~r~~~Er~~L~ 320 (576)
|+...-++|..++
T Consensus 32 el~~f~~eRa~iE 44 (305)
T 2efl_A 32 KYIKFVKERTEIE 44 (305)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444333
No 156
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=39.98 E-value=3.5e+02 Score=28.36 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=5.2
Q ss_pred HHHHHHHHHHcc
Q 008135 355 SMECNQAMKRLK 366 (576)
Q Consensus 355 ~~~yn~~~~kl~ 366 (576)
...|+..+..++
T Consensus 96 ~~~~~k~lae~e 107 (497)
T 3iox_A 96 QTSIKAALAELE 107 (497)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 344444444433
No 157
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=39.92 E-value=1.3e+02 Score=23.50 Aligned_cols=9 Identities=0% Similarity=0.302 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 008135 290 EENEEFKKR 298 (576)
Q Consensus 290 ~e~~eL~~~ 298 (576)
.|+.+|...
T Consensus 34 ~Ev~~LRGq 42 (83)
T 2xdj_A 34 SDIDSLRGQ 42 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 333333333
No 158
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=39.54 E-value=78 Score=32.61 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 269 KLVEEKEREIGKKVEEHKRICEENEEFK 296 (576)
Q Consensus 269 ~~l~~l~~Ele~~~~e~~~l~~e~~eL~ 296 (576)
..+.++.+.+...+...+.+..++.+|+
T Consensus 31 ~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 31 LGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333333333333344444444444443
No 159
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=39.46 E-value=1.5e+02 Score=23.82 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=5.7
Q ss_pred HHHHHHhHHHHHHHH
Q 008135 205 LEKEKENVSEYVEEL 219 (576)
Q Consensus 205 l~~~~~~~~~~~~~L 219 (576)
+...+..+...++.+
T Consensus 13 lq~~~~~l~~q~~~l 27 (107)
T 1fxk_A 13 LQQQAQAISVQKQTV 27 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 160
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=39.02 E-value=66 Score=21.77 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 008135 314 RELQAVERDIADAENARNEWESKTWDLDS 342 (576)
Q Consensus 314 ~Er~~L~~~l~~~e~~~~~l~~~~~~~e~ 342 (576)
+.++++.++|++.+.++..++.+..+++.
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444443
No 161
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=38.81 E-value=63 Score=19.49 Aligned_cols=15 Identities=47% Similarity=0.578 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 008135 237 EKLEKEKCVLEEDLN 251 (576)
Q Consensus 237 ~~l~~~~~~L~~D~~ 251 (576)
++|+++..+|++.++
T Consensus 4 ealekkcaalesklq 18 (31)
T 3ljm_A 4 EALEKKCAALESKLQ 18 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 162
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=38.62 E-value=1.2e+02 Score=22.39 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008135 434 RKRIDALQFHINEMETQLNLLS 455 (576)
Q Consensus 434 ~~~l~~Le~kl~~l~~ql~~lk 455 (576)
+.++..|..++..|..++..++
T Consensus 36 ~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 36 EKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444443333333
No 163
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=38.25 E-value=1.4e+02 Score=28.25 Aligned_cols=43 Identities=12% Similarity=0.131 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 008135 284 EHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADA 326 (576)
Q Consensus 284 e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~ 326 (576)
+++..+.+.++.+.-.+..-+|..+++....+....+..++.+
T Consensus 75 ~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~~a 117 (277)
T 2f1m_A 75 AANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAA 117 (277)
T ss_dssp HHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555566778777777666655555444433
No 164
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=38.25 E-value=1.1e+02 Score=21.97 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICE 290 (576)
Q Consensus 246 L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~ 290 (576)
++.++.....-+.............+..+.+++.....++..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444443333444444444444444444444444444444433
No 165
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=38.23 E-value=89 Score=21.14 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 008135 421 QQSSEMAAKIEGKRKRIDALQFHINEME 448 (576)
Q Consensus 421 ~~l~~l~~~ieek~~~l~~Le~kl~~l~ 448 (576)
++++.+.+.|+-.+..|..|+.++.+|+
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555443
No 166
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.01 E-value=2.1e+02 Score=25.19 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 008135 283 EEHKRICEENEEFKK 297 (576)
Q Consensus 283 ~e~~~l~~e~~eL~~ 297 (576)
.....+..|+++|..
T Consensus 79 ~~~~~ie~ElEeLTa 93 (154)
T 2ocy_A 79 EEADKLNKEVEDLTA 93 (154)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444445555433
No 167
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=37.69 E-value=1.2e+02 Score=22.31 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008135 413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMET 449 (576)
Q Consensus 413 ~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ 449 (576)
......|+.++.++.....+.+.+++.|+.++..|..
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555554443
No 168
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=37.64 E-value=65 Score=25.07 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 250 LNKFNAIIGELNMRKEKMEKLVEEKEREI 278 (576)
Q Consensus 250 ~~K~~~~i~~l~~~~~~~e~~l~~l~~El 278 (576)
+.+-..||..++.....+...+..+..+.
T Consensus 42 L~kA~~yI~~L~~~~~~l~~e~~~L~~e~ 70 (80)
T 1nlw_A 42 LTKAKLHIKKLEDSDRKAVHQIDQLQREQ 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788877777666655544444333
No 169
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=37.50 E-value=1.8e+02 Score=30.25 Aligned_cols=73 Identities=7% Similarity=0.149 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHH
Q 008135 252 KFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTIN--ARDVERMRRELQAVERDIA 324 (576)
Q Consensus 252 K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s--~~di~r~~~Er~~L~~~l~ 324 (576)
+.+.+...+..-...+...-..+..++.....++..+-.++.+|..+|...... -.+...+.-+|+.|-++|.
T Consensus 72 ~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~ndLlDqRD~ll~eLS 146 (463)
T 2d4y_A 72 KAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELN 146 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHhHHHHHHHHHHHH
Confidence 344444444444444444455556667777777777777777777777654321 2334445555555544444
No 170
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=37.44 E-value=3.5e+02 Score=28.15 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=13.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 008135 203 EKLEKEKENVSEYVEELKKKVSEME 227 (576)
Q Consensus 203 ~kl~~~~~~~~~~~~~L~~~~~~le 227 (576)
+-|.++-..+...++.|+..+.+++
T Consensus 84 d~L~kye~~V~~dl~~Le~~l~~is 108 (461)
T 3ghg_B 84 EALLQQERPIRNSVDELNNNVEAVS 108 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhHHHHHHHHHHHHH
Confidence 3344444455555666655555555
No 171
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=37.44 E-value=2.1e+02 Score=24.96 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKK 297 (576)
Q Consensus 238 ~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~ 297 (576)
.-..++..|...+............+..+...++.-++.+|+............+.+|..
T Consensus 49 ~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEe 108 (147)
T 2b9c_A 49 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 108 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555555444444444444444433
No 172
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=37.34 E-value=1.5e+02 Score=23.38 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 242 EKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKK 297 (576)
Q Consensus 242 ~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~ 297 (576)
+.+.|++-++...-..+.+-..+.+++.-+..+..+-+.....+.+++..+.+.-+
T Consensus 5 ~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk 60 (101)
T 1d7m_A 5 RLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLK 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555666666666666666655555555555555544433
No 173
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=37.31 E-value=1.2e+02 Score=27.31 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 008135 395 KPALESFADDVKR 407 (576)
Q Consensus 395 k~~L~~l~~ei~~ 407 (576)
+..+..+.++...
T Consensus 73 q~ql~~I~~e~r~ 85 (175)
T 3lay_A 73 QATAQKIYDDYYT 85 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 174
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=37.29 E-value=40 Score=34.12 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=30.6
Q ss_pred CCCCChHHHHHHHHHHHHHhhhC-CCCC-CCCCCC--------CCCHHHHHHHHHHHHHcCC
Q 008135 53 DLYTDRSHQSSAIRAINAHLSSH-SFHI-AFPLKQ--------VPSVKDITDVIKFLISQLD 104 (576)
Q Consensus 53 rpl~dk~~q~~~~~~i~~fL~~~-~~~~-~~k~l~--------~pt~k~f~~i~~~L~~~ld 104 (576)
.+|+- -..=.+.+.++|... ||+. .+..|. .||...+...+.+|.....
T Consensus 68 ~~L~g---~vnDA~~m~~~L~~~~Gf~~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~a~ 126 (350)
T 4f6o_A 68 NQLRG---CINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKDAQ 126 (350)
T ss_dssp TCCSS---HHHHHHHHHHHHHHHSCCCGGGEEEEETTSSCGGGSCCHHHHHHHHHHHHTTCC
T ss_pred CCCCC---HHHHHHHHHHHHHHhcCCCccceeeecccccccccCCCHHHHHHHHHHHHHhCC
Confidence 45543 233455566777764 8873 222222 3888889999999988753
No 175
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=36.89 E-value=1.7e+02 Score=23.67 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 267 MEKLVEEKEREIGKKVEEHKRICEE 291 (576)
Q Consensus 267 ~e~~l~~l~~Ele~~~~e~~~l~~e 291 (576)
...++.+++.+++....+...|..+
T Consensus 63 ~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 63 LDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444444333
No 176
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.74 E-value=1.2e+02 Score=22.01 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 254 NAIIGELNMRKEKMEKLVEEKEREI 278 (576)
Q Consensus 254 ~~~i~~l~~~~~~~e~~l~~l~~El 278 (576)
..++..++.+...++.....|..++
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i 45 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEV 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444444444
No 177
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=36.11 E-value=1.4e+02 Score=22.72 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008135 415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNL 453 (576)
Q Consensus 415 e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~ 453 (576)
+...|+.++..+...+++.+.+=..++..+..+-..++.
T Consensus 15 ~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~ 53 (72)
T 3cve_A 15 RNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDG 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444433444444433333333
No 178
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=35.41 E-value=1e+02 Score=20.80 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135 418 SLQQQSSEMAAKIEGKRKRIDALQFHIN 445 (576)
Q Consensus 418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~ 445 (576)
.|+.+..++.....+.++++++|+.+..
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444444444444444444444444433
No 179
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=35.28 E-value=76 Score=23.24 Aligned_cols=10 Identities=10% Similarity=0.325 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 008135 417 ISLQQQSSEM 426 (576)
Q Consensus 417 ~~Lq~~l~~l 426 (576)
..|+..+..+
T Consensus 25 ~~Le~~v~~L 34 (62)
T 1jnm_A 25 ARLEEKVKTL 34 (62)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 180
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=35.25 E-value=2e+02 Score=26.43 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccc
Q 008135 513 QIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSI 565 (576)
Q Consensus 513 ~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~~~ 565 (576)
..+..+|..++|.+++........ ..--..|.+-+.-|.+.|..+|. ++|+
T Consensus 89 ~~~~~~LLpv~DnlerAl~~~~~~-~~~~~~l~~Gv~~~~~~l~~~L~-~~Gv 139 (197)
T 1dkg_A 89 EKFINELLPVIDSLDRALEVADKA-NPDMSAMVEDIELTLKSMLDVVR-KFGV 139 (197)
T ss_dssp GGHHHHSHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHT-TTTE
T ss_pred HHHHHHHHHHHhHHHHHHhhhccc-cchHHHHHHHHHHHHHHHHHHHH-HCCC
Confidence 566677777777776664432111 11112377778888888888885 6787
No 181
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=34.83 E-value=2.9e+02 Score=27.75 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhccCCCC
Q 008135 215 YVEELKKKVSEMEGAMTGPT 234 (576)
Q Consensus 215 ~~~~L~~~~~~le~l~~~~~ 234 (576)
.+..+..++.+|+.....|+
T Consensus 4 ~l~~~~~r~~el~~~~~~p~ 23 (354)
T 3d5a_X 4 KLDRLEEEYRELEALLSDPE 23 (354)
T ss_dssp HHHHHTHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHhcCCc
Confidence 44556666777777666664
No 182
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=34.76 E-value=1.2e+02 Score=27.48 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 271 VEEKEREIGKKVEEHKRICEENEEFKKR 298 (576)
Q Consensus 271 l~~l~~Ele~~~~e~~~l~~e~~eL~~~ 298 (576)
+..+.++++.+..+++.|+.++..++.+
T Consensus 29 n~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 29 NFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334444444444444444444443
No 183
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=34.50 E-value=1.9e+02 Score=30.60 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 008135 243 KCVLEEDLNKFN 254 (576)
Q Consensus 243 ~~~L~~D~~K~~ 254 (576)
...++..++.++
T Consensus 79 ~r~~~~~~~~l~ 90 (501)
T 1wle_A 79 LRQLREQIRSLE 90 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 184
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=34.49 E-value=1.5e+02 Score=22.81 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHhcccccc
Q 008135 519 LFALVDSVSKYKERMESKISK-------MNKGISETALTVSEAYKNSLPAQ 562 (576)
Q Consensus 519 l~~l~~~i~k~K~~i~~~i~~-------~~~~~~~~~~~i~~~f~~~~~~~ 562 (576)
+..-+.++.....+||..|.. +-..+-..|.+|+..+.+||.|-
T Consensus 21 i~~g~~tts~AL~kiQdVVN~q~~aL~~L~~qL~~NFgAISssi~dIy~RL 71 (77)
T 2bez_C 21 IQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRL 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444445555554443 44457788899999999998763
No 185
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.82 E-value=68 Score=24.91 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 250 LNKFNAIIGELNMRKEKMEKLVEEKE 275 (576)
Q Consensus 250 ~~K~~~~i~~l~~~~~~~e~~l~~l~ 275 (576)
+.+-..||..++.....++..+..+.
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777766665554444443
No 186
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=33.67 E-value=1.8e+02 Score=23.18 Aligned_cols=30 Identities=10% Similarity=0.113 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 245 VLEEDLNKFNAIIGELNMRKEKMEKLVEEK 274 (576)
Q Consensus 245 ~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l 274 (576)
.|.+.+..|..-|..|+..-..++.++..+
T Consensus 13 ~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l 42 (93)
T 3s4r_A 13 ELNDRFANLIDKVRFLEQQNKILLAELEQL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444454444444444333
No 187
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=33.45 E-value=1.1e+02 Score=26.62 Aligned_cols=28 Identities=18% Similarity=0.327 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 239 LEKEKCVLEEDLNKFNAIIGELNMRKEK 266 (576)
Q Consensus 239 l~~~~~~L~~D~~K~~~~i~~l~~~~~~ 266 (576)
|+..+..+..|+....+....++..+..
T Consensus 64 le~~~~~l~rdleasr~akk~~ea~la~ 91 (146)
T 2xnx_M 64 LEKELEAITREQEINRNLLGNAKLELDQ 91 (146)
T ss_dssp HTTTTTTHHHHHHTTHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333344444444444444444433333
No 188
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=32.76 E-value=3.6e+02 Score=26.32 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 008135 446 EMETQLNLLSKE 457 (576)
Q Consensus 446 ~l~~ql~~lk~e 457 (576)
+....|....++
T Consensus 152 KaKk~Y~~~c~e 163 (337)
T 2x3v_A 152 AAKKAYHLACKE 163 (337)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334443333
No 189
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=32.74 E-value=70 Score=24.09 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 260 LNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (576)
Q Consensus 260 l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l 299 (576)
+...+..-+..+.+++.+|..+..+++.|+.++.+++..+
T Consensus 16 ~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 16 FAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444556666666666666666666666666664433
No 190
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=32.46 E-value=1.3e+02 Score=21.32 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=8.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 008135 426 MAAKIEGKRKRIDALQFHINEME 448 (576)
Q Consensus 426 l~~~ieek~~~l~~Le~kl~~l~ 448 (576)
+...+..+..++.+|...+..+.
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~ 31 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAAR 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 191
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=32.18 E-value=3.5e+02 Score=26.05 Aligned_cols=29 Identities=3% Similarity=0.195 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 495 KASESKFQEAIRQCEEEIQIRALDLFALV 523 (576)
Q Consensus 495 ~~~~~~~ee~~~e~eeek~~l~~el~~l~ 523 (576)
..+...|......++..+.....++..++
T Consensus 209 ~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~ 237 (312)
T 3abh_A 209 LKTKEKYEKSLKELDQGTPQYMENMEQVF 237 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33344444444444444444444443333
No 192
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=31.56 E-value=2.1e+02 Score=23.32 Aligned_cols=59 Identities=14% Similarity=0.318 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 397 ALESFADDVKRSSVEKLEELISLQQQSSEM--------AAKIEGKRKRIDALQFHINEMETQLNLLS 455 (576)
Q Consensus 397 ~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l--------~~~ieek~~~l~~Le~kl~~l~~ql~~lk 455 (576)
.|.+|-+++...-.++.....+|++...+. ...+...+..+++|+.++.+++.++....
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544444444333444433322 25666777777888888887777666544
No 193
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=31.20 E-value=74 Score=21.74 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 256 IIGELNMRKEKMEKLVEEKEREIGK 280 (576)
Q Consensus 256 ~i~~l~~~~~~~e~~l~~l~~Ele~ 280 (576)
++.++..+...++++|..++..|++
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~ 34 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLET 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544443
No 194
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=30.45 E-value=2.4e+02 Score=23.49 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 488 REAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSV 526 (576)
Q Consensus 488 ~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i 526 (576)
.+-+.++.+++.+|+...++.+-+-..-..++..+-+.|
T Consensus 64 se~e~E~ae~k~KYD~~lqe~ese~~~kkK~le~~~~kV 102 (115)
T 3vem_A 64 AELERKMAEVQAEFRRKFHEVEAEHNTRTTKIEKDKNLV 102 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677777766666655544444444444433
No 195
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=30.41 E-value=31 Score=29.18 Aligned_cols=41 Identities=15% Similarity=0.326 Sum_probs=33.7
Q ss_pred hHHHHHHHhcCCCCcccccccccCCCCCChHHHHHHHHHHHHHHH
Q 008135 113 EDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIAS 157 (576)
Q Consensus 113 eev~~~lk~l~yP~~i~ks~l~~~g~~h~wp~~l~~L~WLv~l~~ 157 (576)
.+|..+|..-|||..|+...|.+|.+ -.+.+++.||...+.
T Consensus 21 ~~i~~fL~~~~~~~~is~k~L~~Pt~----kdF~~if~fL~~~id 61 (120)
T 2igp_A 21 RQLCEFLTENGYAHNVSMKSLQAPSV----KDFLKIFTFLYGFLC 61 (120)
T ss_dssp HHHHHHHHHTTCSSCCCTTTTSSCCH----HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCCCCCCccccCCCCH----HHHHHHHHHHHHhcC
Confidence 47899999999999988888876543 589999999997664
No 196
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=30.29 E-value=1.1e+02 Score=24.63 Aligned_cols=27 Identities=26% Similarity=0.194 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 494 LKASESKFQEAIRQCEEEIQIRALDLF 520 (576)
Q Consensus 494 l~~~~~~~ee~~~e~eeek~~l~~el~ 520 (576)
+-+++..+-.+++.++++...|..+|.
T Consensus 59 vyeLE~~h~kmKq~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 59 VYERELTHRKMKDAYEEEIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666677777777766654
No 197
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=30.13 E-value=1.3e+02 Score=25.49 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Q 008135 341 DSKLGRKFKELEALSMECNQAMKRL 365 (576)
Q Consensus 341 e~~l~~~~e~le~l~~~yn~~~~kl 365 (576)
-..++.....-..+..+|+..+..+
T Consensus 82 KrkLAqLQ~AY~~LfqeYd~~lK~~ 106 (130)
T 3cl3_D 82 KRKLAQLQVAYHQLFQEYDNHIKSS 106 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556667788888766543
No 198
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=30.00 E-value=1.8e+02 Score=30.71 Aligned_cols=35 Identities=9% Similarity=0.067 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 008135 308 DVERMRRELQAVERDIADAENARNEWESKTWDLDS 342 (576)
Q Consensus 308 di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~ 342 (576)
+++.+..+...|...+..++....+++.+..++-.
T Consensus 72 ~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 72 DAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777777766544
No 199
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=29.92 E-value=2e+02 Score=22.56 Aligned_cols=46 Identities=13% Similarity=0.237 Sum_probs=0.0
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008135 390 YKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRK 435 (576)
Q Consensus 390 ~k~~ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~ 435 (576)
++..-+.+|..|+..+...+....+++..+++.++.....|.+++.
T Consensus 34 frqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 34 FRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 200
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=29.53 E-value=88 Score=20.18 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=11.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 008135 424 SEMAAKIEGKRKRIDALQFHINE 446 (576)
Q Consensus 424 ~~l~~~ieek~~~l~~Le~kl~~ 446 (576)
......|++.+.++..|+.++..
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555543
No 201
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=29.17 E-value=2.2e+02 Score=22.84 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=17.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 429 KIEGKRKRIDALQFHINEMETQLNLLSKETQEI 461 (576)
Q Consensus 429 ~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee 461 (576)
.++..=.++...-..+++++.++.....+++..
T Consensus 12 ~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~ 44 (104)
T 4afl_A 12 SIENLPFELQRNFQLMRDLDQRTEDLKAEIDKL 44 (104)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555666666666666555443
No 202
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=28.98 E-value=1.7e+02 Score=24.58 Aligned_cols=42 Identities=10% Similarity=0.231 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKK 297 (576)
Q Consensus 256 ~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~ 297 (576)
.++-++.++..++..+..+++.+......+..+...+.++..
T Consensus 89 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 89 AMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455566666666666666666666666666666666544
No 203
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=28.90 E-value=1.6e+02 Score=30.68 Aligned_cols=17 Identities=6% Similarity=0.337 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008135 314 RELQAVERDIADAENAR 330 (576)
Q Consensus 314 ~Er~~L~~~l~~~e~~~ 330 (576)
.++..|+..+.+++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 83 KRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 204
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.74 E-value=1.4e+02 Score=30.91 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 247 EEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295 (576)
Q Consensus 247 ~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL 295 (576)
..++.....-...++.+++.+...+..+++++...+.+.+.+..++.+|
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333444444444444444444443344444444444444
No 205
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=28.62 E-value=2.1e+02 Score=22.77 Aligned_cols=37 Identities=8% Similarity=0.255 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008135 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQ 450 (576)
Q Consensus 414 ~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~q 450 (576)
++...|+.++..+...++....+++.+...++.+...
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433333
No 206
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=28.44 E-value=1.4e+02 Score=23.69 Aligned_cols=24 Identities=8% Similarity=0.047 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 273 EKEREIGKKVEEHKRICEENEEFK 296 (576)
Q Consensus 273 ~l~~Ele~~~~e~~~l~~e~~eL~ 296 (576)
.+..+|......++.|..++.+|.
T Consensus 60 ~V~~eL~~sn~kl~~L~~eL~eL~ 83 (86)
T 1cxz_B 60 PVELLLRGSSRRLDLLHQQLQELH 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555555555555555553
No 207
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.46 E-value=76 Score=23.23 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=10.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008135 423 SSEMAAKIEGKRKRIDALQFHINEMET 449 (576)
Q Consensus 423 l~~l~~~ieek~~~l~~Le~kl~~l~~ 449 (576)
++++...++....++..|..++..|..
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 208
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=26.47 E-value=64 Score=20.58 Aligned_cols=15 Identities=27% Similarity=0.226 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 008135 285 HKRICEENEEFKKRV 299 (576)
Q Consensus 285 ~~~l~~e~~eL~~~l 299 (576)
...|+.|+.+|+.-+
T Consensus 16 n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 16 NWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHh
Confidence 344455555555433
No 209
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=26.13 E-value=1.4e+02 Score=19.40 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 008135 287 RICEENEEFKKRV 299 (576)
Q Consensus 287 ~l~~e~~eL~~~l 299 (576)
.|+.+..+|+..+
T Consensus 19 ~Le~eV~RLk~ll 31 (36)
T 1kd8_B 19 HLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444433
No 210
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=25.87 E-value=3.1e+02 Score=25.71 Aligned_cols=13 Identities=15% Similarity=0.105 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 008135 347 KFKELEALSMECN 359 (576)
Q Consensus 347 ~~e~le~l~~~yn 359 (576)
--..+-++++.|.
T Consensus 104 FP~~lI~LL~~Ci 116 (228)
T 3q0x_A 104 FPGKIISLLEKCI 116 (228)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3344555555553
No 211
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=25.54 E-value=1.1e+02 Score=24.91 Aligned_cols=30 Identities=7% Similarity=0.180 Sum_probs=15.4
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 302 QTINARDVERMRRELQAVERDIADAENARN 331 (576)
Q Consensus 302 Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~ 331 (576)
+++.+..-..++.....-+.+++.+...+.
T Consensus 62 r~~p~~~R~~~~~klr~Yk~dL~~lk~elk 91 (102)
T 1vcs_A 62 REIPPQSRGMYSNRMRSYKQEMGKLETDFK 91 (102)
T ss_dssp TTSCTTTHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HhCCHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555555544433
No 212
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=25.54 E-value=2.8e+02 Score=22.73 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 008135 467 EEAKKMEEDIQT 478 (576)
Q Consensus 467 ~Ei~kl~eele~ 478 (576)
..++.+..+|+.
T Consensus 54 ~~le~lk~eL~~ 65 (107)
T 2no2_A 54 EVLESLKQELAT 65 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 213
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=25.52 E-value=1.1e+02 Score=28.79 Aligned_cols=45 Identities=24% Similarity=0.152 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL 301 (576)
Q Consensus 257 i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~ 301 (576)
++.++..+.+++.++.++.+..+..+..+..++..+.+|...+..
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr 52 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKR 52 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444444555555555555444444444444455445555444433
No 214
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=25.22 E-value=5.9e+02 Score=26.44 Aligned_cols=42 Identities=5% Similarity=0.029 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIG 279 (576)
Q Consensus 238 ~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele 279 (576)
.|-+.-.....||+.++..++++..........+..|+....
T Consensus 85 ~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~ 126 (461)
T 3ghg_B 85 ALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQ 126 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 344444556667777777777777666666666666655443
No 215
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.18 E-value=2.2e+02 Score=24.17 Aligned_cols=66 Identities=17% Similarity=0.296 Sum_probs=39.1
Q ss_pred CCCCCChHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCHH------HHHHHHHHHHHc-CC-CCC--CcChHh-----HHH
Q 008135 52 ADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPSVK------DITDVIKFLISQ-LD-YPS--TTKFEE-----DLF 116 (576)
Q Consensus 52 ~rpl~dk~~q~~~~~~i~~fL~~~~~~~~~k~l~~pt~k------~f~~i~~~L~~~-ld-~~~--~~k~ee-----ev~ 116 (576)
.++|++ +-++.|+.+|. +.+++-+. ++ ..+ .+.+|+.+.+.. +| ..| ..+..- +.+
T Consensus 9 ~~~l~~-----ee~~el~~WL~--~l~Ls~~~-rn-~rRDFSdG~lvAEIl~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~l 79 (127)
T 2ee7_A 9 ASSVDE-----EALHQLYLWVD--NIPLSRPK-RN-LSRDFSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHL 79 (127)
T ss_dssp CSSCCH-----HHHHHHHHHHH--HSCCSCCS-SC-HHHHHTTSHHHHHHHHHHCTTTCCCSSCCCCSSHHHHHHHHHHH
T ss_pred CCCCCH-----HHHHHHHHHHH--cCCCCCCC-Cc-hhhhccchhHHHHHHHHHCcCcccccccCCCCcHHHHHHhHHHH
Confidence 456664 46789999995 45543321 11 134 456678888865 55 223 334433 554
Q ss_pred --HHHHhcCCCC
Q 008135 117 --VVLKSLSCPF 126 (576)
Q Consensus 117 --~~lk~l~yP~ 126 (576)
.+|+.+|+++
T Consensus 80 n~kvl~kl~~~l 91 (127)
T 2ee7_A 80 NRKVLKRLNFSV 91 (127)
T ss_dssp HHHTTGGGTCCC
T ss_pred HHHHHHHcCCCC
Confidence 5899999865
No 216
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.91 E-value=1.9e+02 Score=20.49 Aligned_cols=23 Identities=9% Similarity=0.084 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008135 272 EEKEREIGKKVEEHKRICEENEE 294 (576)
Q Consensus 272 ~~l~~Ele~~~~e~~~l~~e~~e 294 (576)
..|.+.|.....++..|..+++.
T Consensus 26 ~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 26 SKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444333
No 217
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.75 E-value=2e+02 Score=22.62 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 250 LNKFNAIIGELNMRKEKMEKLVEEK 274 (576)
Q Consensus 250 ~~K~~~~i~~l~~~~~~~e~~l~~l 274 (576)
+.+-..||..|+.....+...+..+
T Consensus 47 L~~A~~YI~~L~~~~~~l~~~~~~L 71 (88)
T 1nkp_A 47 LKKATAYILSVQAEEQKLISEEDLL 71 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777776665555444433
No 218
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=24.68 E-value=3.2e+02 Score=23.16 Aligned_cols=24 Identities=8% Similarity=0.238 Sum_probs=11.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHH
Q 008135 303 TINARDVERMRRELQAVERDIADA 326 (576)
Q Consensus 303 ~~s~~di~r~~~Er~~L~~~l~~~ 326 (576)
+++.+++.+-++=...++..|..+
T Consensus 101 ~l~~~Ei~~Rr~fV~~~r~~I~~m 124 (130)
T 4dnd_A 101 KLPAGDLQERKVFVERMREAVQEM 124 (130)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 566666655433334444444433
No 219
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=24.42 E-value=1.8e+02 Score=20.13 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=17.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 428 AKIEGKRKRIDALQFHINEMETQLNLLSKE 457 (576)
Q Consensus 428 ~~ieek~~~l~~Le~kl~~l~~ql~~lk~e 457 (576)
..++..++.+..|+.+...+-++|+.....
T Consensus 5 ekv~~Le~~ld~LqTr~ArLlae~~ssq~K 34 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTRFARLLAEYNATQMK 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666666666655443
No 220
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.40 E-value=1.7e+02 Score=19.72 Aligned_cols=13 Identities=31% Similarity=0.289 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 008135 238 KLEKEKCVLEEDL 250 (576)
Q Consensus 238 ~l~~~~~~L~~D~ 250 (576)
-|++++..|..|-
T Consensus 7 ylrkkiarlkkdn 19 (52)
T 3he5_B 7 YLRKKIARLKKDN 19 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh
Confidence 3455555555443
No 221
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=23.96 E-value=1.5e+02 Score=18.99 Aligned_cols=14 Identities=14% Similarity=-0.038 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 008135 285 HKRICEENEEFKKR 298 (576)
Q Consensus 285 ~~~l~~e~~eL~~~ 298 (576)
...|+.|..+|+.-
T Consensus 17 ~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 17 LYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 34445555555443
No 222
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=23.90 E-value=2.1e+02 Score=20.78 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 260 LNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFK 296 (576)
Q Consensus 260 l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~ 296 (576)
-+++++.+-+....+.+||.....++..++.|+..|.
T Consensus 25 SeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 25 SEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 3445555555555666666666666667777766654
No 223
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.59 E-value=2.9e+02 Score=22.26 Aligned_cols=6 Identities=33% Similarity=0.578 Sum_probs=2.1
Q ss_pred HHHHHH
Q 008135 205 LEKEKE 210 (576)
Q Consensus 205 l~~~~~ 210 (576)
|...+.
T Consensus 20 L~~Ki~ 25 (98)
T 2ke4_A 20 LQQQLE 25 (98)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 224
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=23.48 E-value=4.7e+02 Score=24.65 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 242 EKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREI 278 (576)
Q Consensus 242 ~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~El 278 (576)
++.-..+++.....-|++|......+-.+|+.++++-
T Consensus 171 RK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdE 207 (242)
T 3uux_B 171 QKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQ 207 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3344445555555555555555555556666555443
No 225
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=23.47 E-value=86 Score=20.12 Aligned_cols=15 Identities=27% Similarity=0.146 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 008135 285 HKRICEENEEFKKRV 299 (576)
Q Consensus 285 ~~~l~~e~~eL~~~l 299 (576)
...|+.|..+|+.-+
T Consensus 17 n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 17 LYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHH
Confidence 344555555555443
No 226
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=23.41 E-value=1.9e+02 Score=20.13 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 249 DLNKFNAIIGELNMRKEKMEKLVEEKEREI 278 (576)
Q Consensus 249 D~~K~~~~i~~l~~~~~~~e~~l~~l~~El 278 (576)
.+.|+......+-.++.+++....+++.|+
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQEi 34 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQEI 34 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 345555555666666666655555554443
No 227
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=23.25 E-value=3.6e+02 Score=25.33 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=12.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 427 AAKIEGKRKRIDALQFHINEMETQLNLLSKET 458 (576)
Q Consensus 427 ~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~ 458 (576)
...++..+.+..++.+.+.+...++.++++.+
T Consensus 184 ~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~ 215 (228)
T 3q0x_A 184 SDDLSRTRDDRDSMVAQLAQCRQQLAQLREQY 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444333
No 228
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=23.09 E-value=4.9e+02 Score=24.67 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008135 397 ALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDAL 440 (576)
Q Consensus 397 ~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~L 440 (576)
.|..+..+..+......+...+++..+......++..+.....+
T Consensus 99 ~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~ 142 (301)
T 2efk_A 99 ELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERD 142 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433333333
No 229
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=22.94 E-value=6.7e+02 Score=26.25 Aligned_cols=34 Identities=6% Similarity=0.028 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008135 436 RIDALQFHINEMETQLNLLSKETQEITKRCAEEA 469 (576)
Q Consensus 436 ~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei 469 (576)
+++..+.....+.+.|+....+++.+...+.+|.
T Consensus 17 elarvqkana~aka~Ye~~~ae~~a~n~~i~aeN 50 (497)
T 3iox_A 17 ELARVQKANADAKAAYEAAVAANNAANAALTAEN 50 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3333444444444555555544444443444443
No 230
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.94 E-value=1.2e+02 Score=19.67 Aligned_cols=11 Identities=18% Similarity=0.289 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 008135 287 RICEENEEFKK 297 (576)
Q Consensus 287 ~l~~e~~eL~~ 297 (576)
.|+.|..+|+.
T Consensus 19 ~Le~EV~RL~~ 29 (36)
T 1kd8_A 19 HLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 231
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.69 E-value=1.6e+02 Score=22.15 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=11.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 008135 423 SSEMAAKIEGKRKRIDALQFHINEM 447 (576)
Q Consensus 423 l~~l~~~ieek~~~l~~Le~kl~~l 447 (576)
+.++...+.++..+|..|+.+++++
T Consensus 27 I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 27 IKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444443
No 232
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=22.66 E-value=2.1e+02 Score=20.40 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 249 DLNKFNAIIGELNMRKEKMEKLVEEKEREIG 279 (576)
Q Consensus 249 D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele 279 (576)
.+.|++..-.++-.++..++....+.++|++
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~e~eQEie 42 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCSEKEQEIE 42 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666665554443
No 233
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=22.57 E-value=3.9e+02 Score=23.34 Aligned_cols=32 Identities=19% Similarity=0.428 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 268 EKLVEEKEREIGKKVEEHKRICEENEEFKKRV 299 (576)
Q Consensus 268 e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l 299 (576)
+..+.+.+..+++-+.....+..-..+|...+
T Consensus 113 ~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi 144 (152)
T 4fla_A 113 KDVLSEKEKKLEEYKQKLARVTQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444443444444444444444443
No 234
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=22.57 E-value=6.4e+02 Score=25.84 Aligned_cols=94 Identities=7% Similarity=0.146 Sum_probs=65.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 205 LEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEE 284 (576)
Q Consensus 205 l~~~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e 284 (576)
+...-..+..-+..|..-+..|..+...|..-+...+-...++.|-..+...+..+.......+......+.=+......
T Consensus 199 l~~le~elA~~L~SLT~HyDqC~~l~~~~~s~~e~~elleVv~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~ 278 (413)
T 4hpq_C 199 ADQLEQELADFLKSFTDHFDKCSALSSRSVSPEDAQNLFEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDAD 278 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHhHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445555666667777888777777666666777888999999999999999988888877777776666666655
Q ss_pred HHHHHHHHHHHHHH
Q 008135 285 HKRICEENEEFKKR 298 (576)
Q Consensus 285 ~~~l~~e~~eL~~~ 298 (576)
...+......+...
T Consensus 279 ~~~l~~~~~~l~~~ 292 (413)
T 4hpq_C 279 KAKMQATLSKLLTE 292 (413)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555554444433
No 235
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=22.37 E-value=3.5e+02 Score=22.69 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 499 SKFQEAIRQCEEEIQIRALDLFALVDSVSKY 529 (576)
Q Consensus 499 ~~~ee~~~e~eeek~~l~~el~~l~~~i~k~ 529 (576)
..|..+...+.+.+..|..++......|..|
T Consensus 71 ~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~nF 101 (119)
T 2avr_X 71 SQYQELASKYEDALKKLEAEMEQQKAVISDF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555
No 236
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=22.16 E-value=2.1e+02 Score=20.16 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 008135 235 EREKLEKEKCVLEEDLNKFN--AIIGELNMRKEKMEKLVEEK 274 (576)
Q Consensus 235 ~l~~l~~~~~~L~~D~~K~~--~~i~~l~~~~~~~e~~l~~l 274 (576)
+..+|+++..+|+..+..+- .-|+.+..+-.++.++|.++
T Consensus 3 rvkaleekvkaleekvkalggggrieelkkkweelkkkieel 44 (67)
T 1lq7_A 3 RVKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEEL 44 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHh
Confidence 45566666666665544332 12555555555555555444
No 237
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=22.01 E-value=3.9e+02 Score=23.14 Aligned_cols=36 Identities=11% Similarity=0.226 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008135 418 SLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNL 453 (576)
Q Consensus 418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~ 453 (576)
.+......+...+.+.+..+..|+.++..+..+++.
T Consensus 47 ~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~ 82 (155)
T 2oto_A 47 RDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDL 82 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444433
No 238
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.94 E-value=3.5e+02 Score=24.77 Aligned_cols=61 Identities=21% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008135 253 FNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMR 313 (576)
Q Consensus 253 ~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~ 313 (576)
.+.+-+..+....+.-.....|..+++.+..++..++.++.+|+..+..-.+=+.-|+++.
T Consensus 99 Wk~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 99 WKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 239
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=21.84 E-value=3e+02 Score=21.83 Aligned_cols=8 Identities=50% Similarity=0.663 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 008135 419 LQQQSSEM 426 (576)
Q Consensus 419 Lq~~l~~l 426 (576)
++.++..+
T Consensus 13 lq~~~~~l 20 (107)
T 1fxk_A 13 LQQQAQAI 20 (107)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 240
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=21.70 E-value=3.1e+02 Score=21.89 Aligned_cols=23 Identities=9% Similarity=0.292 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 008135 305 NARDVERMRRELQAVERDIADAE 327 (576)
Q Consensus 305 s~~di~r~~~Er~~L~~~l~~~e 327 (576)
++.+|.+-++-...+.+.|+.+.
T Consensus 66 ~~~EI~~Rk~~v~~l~~~i~~lk 88 (95)
T 2c5k_T 66 ENEDVSGREAQVKNIKQQLDALK 88 (95)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566555555555555555443
No 241
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=21.58 E-value=1.7e+02 Score=18.76 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 008135 285 HKRICEENEEFKKR 298 (576)
Q Consensus 285 ~~~l~~e~~eL~~~ 298 (576)
...|+.|..+|+.-
T Consensus 17 n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 17 NXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 34445555555443
No 242
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=21.44 E-value=2.8e+02 Score=21.22 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=17.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 428 AKIEGKRKRIDALQFHINEMETQLNLLSKET 458 (576)
Q Consensus 428 ~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~ 458 (576)
..++..++.+..|+.+...|-++|......+
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~ssQ~KL 37 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYESMQQKL 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666666666666655433
No 243
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=21.33 E-value=4.6e+02 Score=23.70 Aligned_cols=46 Identities=17% Similarity=0.123 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccc
Q 008135 517 LDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQ 562 (576)
Q Consensus 517 ~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~ 562 (576)
++-.++-+.-..|+..+..-|..|+.-+..-+.=|++.-...+.-+
T Consensus 153 RNQsKLssAEtaYkqvcsDiInkMnkll~n~~riineaasavwstq 198 (294)
T 3caz_A 153 RNQQKFKDAEAAYSSVCADLIQKMETVWKKHVSIFAEAASAVWSTQ 198 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555555555444444444444433333333
No 244
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=21.17 E-value=3.5e+02 Score=22.31 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=19.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 428 AKIEGKRKRIDALQFHINEMETQLNLLS 455 (576)
Q Consensus 428 ~~ieek~~~l~~Le~kl~~l~~ql~~lk 455 (576)
..+...+..+++|+.++.++..++....
T Consensus 62 ~tl~~R~~~Vs~lq~KiaeLKrqLAd~v 89 (113)
T 4fi5_A 62 RTLTDREGVAVSIQAKIDELKRQLADRI 89 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777888888887776666544
No 245
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=21.13 E-value=5.7e+02 Score=24.70 Aligned_cols=39 Identities=18% Similarity=0.050 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 485 MVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALV 523 (576)
Q Consensus 485 ~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~ 523 (576)
....+|+..|...=...+....+++..+-.+...|.+||
T Consensus 184 ~K~eeAd~~Y~~~V~~a~~~r~eL~~tk~~~v~~Lr~LI 222 (279)
T 3qwe_A 184 AKAQEAEALYQACVREANARQQDLEIAKQRIVSHVRKLV 222 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344566666666666666666666666666666666666
No 246
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.90 E-value=2.8e+02 Score=21.47 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 008135 254 NAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERM 312 (576)
Q Consensus 254 ~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~ 312 (576)
+.+-+.......+.=.....+..+++.+..++..++.++..|+.-.+.-..=++-+++|
T Consensus 19 k~lAE~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl~~l 77 (79)
T 2zxx_A 19 KEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIERL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 247
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=20.84 E-value=2.1e+02 Score=29.50 Aligned_cols=11 Identities=18% Similarity=0.187 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 008135 243 KCVLEEDLNKF 253 (576)
Q Consensus 243 ~~~L~~D~~K~ 253 (576)
...+...++.+
T Consensus 37 ~r~~~~~~~~l 47 (421)
T 1ses_A 37 VQELKKRLQEV 47 (421)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 248
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=20.72 E-value=4.5e+02 Score=23.42 Aligned_cols=73 Identities=4% Similarity=0.068 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 008135 239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVER 311 (576)
Q Consensus 239 l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r 311 (576)
+..-...|++-+..+..-...|+..+.......-+++.++.+..-++-+|.........-+...|++..+|..
T Consensus 94 l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~Gv~q~~in~ 166 (170)
T 3l4q_C 94 ILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGARQKKINE 166 (170)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3333334444444444444444443333333444455555555556677777778888888889999877754
No 249
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=20.60 E-value=3.4e+02 Score=21.89 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 008135 411 EKLEELISLQQQSSEMAAKIEG 432 (576)
Q Consensus 411 ~~~~e~~~Lq~~l~~l~~~iee 432 (576)
++..+...|+..++.+......
T Consensus 34 ELIqEYl~LE~~~s~le~e~~r 55 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNR 55 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554433333
No 250
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=20.53 E-value=3.7e+02 Score=23.25 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 008135 317 QAVERDIADAENA 329 (576)
Q Consensus 317 ~~L~~~l~~~e~~ 329 (576)
..|.++++....+
T Consensus 118 qgLrRDLeASReA 130 (146)
T 2xnx_M 118 QSLRRDLDASREA 130 (146)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 4455555544333
No 251
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=20.52 E-value=3.9e+02 Score=28.08 Aligned_cols=25 Identities=12% Similarity=0.164 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH
Q 008135 316 LQAVERDIADAENARNEWESKTWDL 340 (576)
Q Consensus 316 r~~L~~~l~~~e~~~~~l~~~~~~~ 340 (576)
...|+..+..++.....++.+..++
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 252
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=20.42 E-value=6.7e+02 Score=25.25 Aligned_cols=33 Identities=0% Similarity=0.096 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008135 281 KVEEHKRICEENEEFKKRVKLQTINARDVERMR 313 (576)
Q Consensus 281 ~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~ 313 (576)
..-++-+|...+......+...+++.+++...-
T Consensus 245 lkp~l~ql~k~rd~~~~~L~~~g~~~~~i~~~L 277 (373)
T 3hhm_B 245 IKPDLIQLRKTRDQYLMWLTQKGVRQKKLNEWL 277 (373)
T ss_dssp HHHHHHHHHHHHTC-------------------
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 333334444444444445566666666664443
No 253
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=20.40 E-value=2.4e+02 Score=20.13 Aligned_cols=29 Identities=17% Similarity=0.464 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008135 309 VERMRRELQAVERDIADAENARNEWESKT 337 (576)
Q Consensus 309 i~r~~~Er~~L~~~l~~~e~~~~~l~~~~ 337 (576)
+..+.++...+.+.+++-..++..|+.-+
T Consensus 19 V~eL~qe~k~m~k~lEeEqkARk~LE~~v 47 (56)
T 2w6b_A 19 VQELRQDNKKMKKSLEEEQRARKDLEKLV 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555554443
No 254
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.35 E-value=90 Score=22.51 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=0.0
Q ss_pred CCchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 008135 192 GDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEG 228 (576)
Q Consensus 192 ~~~~~l~~~~~~kl~~~~~~~~~~~~~L~~~~~~le~ 228 (576)
+|..+-..+|.+.+...++.+..++..|+.++.+|++
T Consensus 19 GY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 19 GYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 255
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.18 E-value=4.7e+02 Score=23.40 Aligned_cols=40 Identities=10% Similarity=0.182 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135 237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKER 276 (576)
Q Consensus 237 ~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~ 276 (576)
..++.....|..+..+++..+..++.....++..+..++.
T Consensus 45 ~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 45 ESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777776666666665544
Done!