Your job contains 1 sequence.
>008136
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVES
LEDLVTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQDSNS
DVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDN
TGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAV
PSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSID
SNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQ
QQGHSNLLGMPLGGNKQFSSQQNPLLQQVRFCARDF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008136
(576 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2172389 - symbol:AT5G18230 species:3702 "Arabi... 1310 1.3e-169 2
ZFIN|ZDB-GENE-040927-6 - symbol:cnot3a "CCR4-NOT transcri... 661 6.7e-65 1
UNIPROTKB|O75175 - symbol:CNOT3 "CCR4-NOT transcription c... 657 1.8e-64 1
UNIPROTKB|F6XXD6 - symbol:CNOT3 "Uncharacterized protein"... 655 2.9e-64 1
MGI|MGI:2385261 - symbol:Cnot3 "CCR4-NOT transcription co... 654 3.7e-64 1
UNIPROTKB|F1RNH3 - symbol:CNOT3 "Uncharacterized protein"... 653 4.7e-64 1
UNIPROTKB|E1BCS1 - symbol:CNOT3 "Uncharacterized protein"... 651 7.6e-64 1
RGD|1304771 - symbol:Cnot3 "CCR4-NOT transcription comple... 650 9.7e-64 1
ZFIN|ZDB-GENE-030131-5838 - symbol:cnot3b "CCR4-NOT trans... 649 1.2e-63 1
UNIPROTKB|E2R344 - symbol:CNOT3 "Uncharacterized protein"... 643 5.4e-63 1
FB|FBgn0033029 - symbol:l(2)NC136 "lethal (2) NC136" spec... 626 3.4e-61 1
POMBASE|SPAC1B3.05 - symbol:not3 "CCR4-Not complex subuni... 553 1.9e-53 1
ASPGD|ASPL0000074489 - symbol:AN4585 species:162425 "Emer... 495 3.3e-51 2
DICTYBASE|DDB_G0272056 - symbol:DDB_G0272056 "putative CC... 466 2.6e-47 2
WB|WBGene00003826 - symbol:ntl-3 species:6239 "Caenorhabd... 460 1.5e-45 2
UNIPROTKB|G5EFX8 - symbol:ntl-3 "Protein NTL-3, isoform a... 460 1.5e-45 2
CGD|CAL0002492 - symbol:NOT5 species:5476 "Candida albica... 446 9.4e-45 2
UNIPROTKB|Q5A755 - symbol:NOT5 "Potential mRNA deadenylas... 446 9.4e-45 2
SGD|S000001300 - symbol:NOT3 "Component of the CCR4-NOT t... 423 1.5e-43 2
UNIPROTKB|H7C148 - symbol:CNOT3 "CCR4-NOT transcription c... 375 1.3e-34 1
SGD|S000006276 - symbol:NOT5 "Component of the CCR4-NOT t... 339 2.1e-29 2
UNIPROTKB|H7C3F5 - symbol:CNOT3 "CCR4-NOT transcription c... 213 1.5e-16 1
DICTYBASE|DDB_G0289701 - symbol:DDB_G0289701 "ezrin/radix... 97 1.3e-05 2
DICTYBASE|DDB_G0288067 - symbol:mf12 species:44689 "Dicty... 115 4.7e-05 2
DICTYBASE|DDB_G0302588 - symbol:DDB_G0302588 "RanBP2-type... 124 0.00013 3
UNIPROTKB|D4AD67 - symbol:Ktn1 "Protein Ktn1" species:101... 128 0.00024 1
UNIPROTKB|O15083 - symbol:ERC2 "ERC protein 2" species:96... 124 0.00047 1
UNIPROTKB|E2QV06 - symbol:CGNL1 "Uncharacterized protein"... 125 0.00052 1
DICTYBASE|DDB_G0279375 - symbol:DDB_G0279375 "OTU domain ... 116 0.00078 1
TAIR|locus:2093462 - symbol:MFP1 "MAR binding filament-li... 120 0.00090 1
>TAIR|locus:2172389 [details] [associations]
symbol:AT5G18230 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
EMBL:CP002688 GO:GO:0006355 KO:K12580 OMA:ESIYHLP IPI:IPI00939040
RefSeq:NP_001154716.1 UniGene:At.7555 ProteinModelPortal:F4JWJ7
PRIDE:F4JWJ7 EnsemblPlants:AT5G18230.2 GeneID:831941
KEGG:ath:AT5G18230 Uniprot:F4JWJ7
Length = 845
Score = 1310 (466.2 bits), Expect = 1.3e-169, Sum P(2) = 1.3e-169
Identities = 278/393 (70%), Positives = 310/393 (78%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNK--VYDTDNANQKEKFEADLKKEIKKLQRY 58
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNK VYDTDN NQKEKFEADLKKEIKKLQRY
Sbjct: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKWNVYDTDNVNQKEKFEADLKKEIKKLQRY 60
Query: 59 RDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQ 118
RDQIKTWIQSSEIKDKKVSASYEQ+LVDARKLIE+EMERFKICEKETKTKAFSKEGLGQQ
Sbjct: 61 RDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEKEMERFKICEKETKTKAFSKEGLGQQ 120
Query: 119 PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH 178
PKTDPKEKAKSETRDWLNN+VSELESQIDSFEAELEGL+VKKGKTRPPRLTHLETSITRH
Sbjct: 121 PKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRH 180
Query: 179 KAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKV 238
K HI+KLELILRLLDNDELSPEQVNDVKD L+DYVERNQDDF+EFSDVDELY LPLD+V
Sbjct: 181 KDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEV 240
Query: 239 ESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDS 298
E LEDLVT GP LVKG Q+ + + TH Q E+ EDT+ DS
Sbjct: 241 EGLEDLVTAGP--LVKGTPLSMKSSLAASAS-QVRSISLPTHHQ-----EKTEDTSLPDS 292
Query: 299 NSDVAARTPPAKS-SGVGSTASTPAVGPATPISINVPAQTLSNASNT-SPVLPGSSSVRG 356
++++ +TPP K+ +G+ S STPA G P S+NVPA +SN S T S +P +S+
Sbjct: 293 SAEMVPKTPPPKNGAGLHSAPSTPAGG--RP-SLNVPAGNVSNTSVTLSTSIPTQTSIES 349
Query: 357 VFDNTGPISSSPP--VNLTSSTKEEDVGNFPGR 387
+ + P+++ L S V + P R
Sbjct: 350 M-GSLSPVAAKEEDATTLPSRKPPSSVADTPLR 381
Score = 361 (132.1 bits), Expect = 1.3e-169, Sum P(2) = 1.3e-169
Identities = 95/200 (47%), Positives = 115/200 (57%)
Query: 375 STKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSD 434
+ KEED P R+ S+ D + G G + +P+NG+ + ++
Sbjct: 357 AAKEEDATTLPSRKPPSSVADTPLRGIG-RVGIPNQPQPSQPPSPIPANGSRISATSAAE 415
Query: 435 VAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRV 494
VAKRNI+G E VQ L SPLS +M+L AKGNDGT S DSN G+ A GR
Sbjct: 416 VAKRNIMGVESN------VQPLTSPLS-KMVLPPTAKGNDGTAS-DSN-PGDVAASIGRA 466
Query: 495 FTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPL 552
F+PS+ G QWR G+ FQ+QNE RGRTEIAPDQREKF GH NLLG+P
Sbjct: 467 FSPSIVSGSQWRPGSPFQSQNET--VRGRTEIAPDQREKFLQRLQQVQQ-GHGNLLGIPS 523
Query: 553 --GGN-KQFSSQQ-NPLLQQ 568
GGN KQFSSQQ NPLLQQ
Sbjct: 524 LSGGNEKQFSSQQQNPLLQQ 543
>ZFIN|ZDB-GENE-040927-6 [details] [associations]
symbol:cnot3a "CCR4-NOT transcription complex,
subunit 3a" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
ZFIN:ZDB-GENE-040927-6 GO:GO:0005634 GO:GO:0006355
GeneTree:ENSGT00390000014743 EMBL:CR854927 IPI:IPI00996653
Ensembl:ENSDART00000137699 ArrayExpress:E9QGK5 Bgee:E9QGK5
Uniprot:E9QGK5
Length = 901
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 191/515 (37%), Positives = 260/515 (50%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVAEGVEQFEDIWKKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ LV+ RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSI 175
DP +K K ET WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 114 VDPAQKEKEETEQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLP 234
RH+ HI LE ILR+LDND + + ++ +KD +E Y++ +QD DFEE + LY L
Sbjct: 174 ERHRYHIRMLETILRMLDNDSIQVDAIHKIKDDVEYYIDSSQDPDFEEN---EFLYDDLD 230
Query: 235 LDKVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQE--QGED 292
L+ + + L+ P G ++ P S T + E +G
Sbjct: 231 LEDIPAT--LMATSPQGHIEDEMFLQSSSTPTSTTSSSPIPP-SPATGTTEILEDKRGRS 287
Query: 293 TASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSS 352
T S+ S S V P + SS S +S + ++ +S+ + S S +L S
Sbjct: 288 TDSEVSQSPVKNGNP-SLSSFSSSASSGSSSSSSSLVSMATVVGGCTAVSGGSSLLASFS 346
Query: 353 SVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXX-XXX 411
S V + V L+S++ + N P S P+L
Sbjct: 347 SA--VQQHPPQSQQQTQVKLSSTSIPSN--NTPSPPSHPTLPASTASSLPSSSTPGPITS 402
Query: 412 XXXXXATAVPS--NGNLG------AVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNR 463
A++VP + LG V S V++ LG S + L+S S
Sbjct: 403 NSLSQASSVPGVESSRLGLGKGGVTVTSSSSVSQMPGLGLTSLSSSLNTMAGLLSG-STP 461
Query: 464 MILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPS 498
+QAA G TG S G + AG + PS
Sbjct: 462 APYAQAAAGGT-TGGASSGPVGSGSSSAG-ISIPS 494
>UNIPROTKB|O75175 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS]
[GO:2000036 "regulation of stem cell maintenance" evidence=IMP]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0006351 GO:GO:0000932
GO:GO:0000289 EMBL:AF180474 EMBL:AB014591 EMBL:AL133647
EMBL:BC016474 IPI:IPI00005015 IPI:IPI00186188 IPI:IPI00478453
PIR:T43456 RefSeq:NP_055331.1 UniGene:Hs.343571
ProteinModelPortal:O75175 DIP:DIP-40297N IntAct:O75175
MINT:MINT-1439009 STRING:O75175 PhosphoSite:O75175 PaxDb:O75175
PRIDE:O75175 Ensembl:ENST00000221232 Ensembl:ENST00000358389
Ensembl:ENST00000406403 Ensembl:ENST00000570333
Ensembl:ENST00000570863 Ensembl:ENST00000570970
Ensembl:ENST00000570997 Ensembl:ENST00000571055
Ensembl:ENST00000571119 Ensembl:ENST00000572058
Ensembl:ENST00000572589 Ensembl:ENST00000572598
Ensembl:ENST00000572852 Ensembl:ENST00000573388
Ensembl:ENST00000573528 Ensembl:ENST00000573769
Ensembl:ENST00000574556 Ensembl:ENST00000574815
Ensembl:ENST00000574965 Ensembl:ENST00000575585
Ensembl:ENST00000576314 Ensembl:ENST00000576558
Ensembl:ENST00000576765 Ensembl:ENST00000577005 GeneID:4849
KEGG:hsa:4849 UCSC:uc002qdj.2 CTD:4849 GeneCards:GC19P054641
HGNC:HGNC:7879 HPA:HPA006408 MIM:604910 neXtProt:NX_O75175
PharmGKB:PA26674 eggNOG:COG5665 HOGENOM:HOG000184850
HOVERGEN:HBG051042 InParanoid:O75175 KO:K12580 OMA:IFYYLEP
OrthoDB:EOG41JZDJ PhylomeDB:O75175 GenomeRNAi:4849 NextBio:18674
ArrayExpress:O75175 Bgee:O75175 CleanEx:HS_CNOT3
Genevestigator:O75175 GermOnline:ENSG00000088038 Uniprot:O75175
Length = 753
Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 180/466 (38%), Positives = 239/466 (51%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSI 175
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLP 234
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L
Sbjct: 174 EKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLD 230
Query: 235 LDKVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTA 294
L+ + + LV PP + + + T+ E ED
Sbjct: 231 LEDIP--QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDK 286
Query: 295 SQDSNSDVAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASNTSPVLPG 350
+ ++D PAK S V S +PAV P P S PA ++A +T+P G
Sbjct: 287 KRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYP-SGPPPA---ASALSTTPGNNG 342
Query: 351 SSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTD-----VRVMGRGGXX 405
+ GP +S P + + + P S PS T V+ G GG
Sbjct: 343 VPAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGG 402
Query: 406 XXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSG 451
++A G S V + AE L SSG
Sbjct: 403 SGGGGSSSSSNSSAGGGAGKQNGATSYSSVVADS--PAEVALSSSG 446
>UNIPROTKB|F6XXD6 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 CTD:4849 KO:K12580 GeneTree:ENSGT00390000014743
OMA:ESIYHLP EMBL:AAEX03000741 Ensembl:ENSCAFT00000004262
RefSeq:XP_541428.3 GeneID:484312 KEGG:cfa:484312 Uniprot:F6XXD6
Length = 753
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 175/473 (36%), Positives = 236/473 (49%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSI 175
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLP 234
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L
Sbjct: 174 EKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLD 230
Query: 235 LDKVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTA 294
L+ + + LV PP + + + T+ E ED
Sbjct: 231 LEDIP--QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDK 286
Query: 295 SQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSV 354
+ ++D PAK+ ++ PA P S ++A +T+P G+S+
Sbjct: 287 KRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPSYPPGPPPATSALSTTPGNNGASTP 346
Query: 355 RGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVR---VMGRGGXXXXXXXX 411
GP +S P + + + P S S T R V GG
Sbjct: 347 AAPTSALGPKASPAPSHSSGTPAPYAQAVAPPAPSGSSTTQPRPPSVQPGGGGGSGGGGS 406
Query: 412 XXXXXATAVPSNG---NLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLS 461
+ + G GA S VA A G SG + P S
Sbjct: 407 GGSGSSNSSGGGGAGKQNGATSYSSVVADSPAEVALSSSGGSGASSQALGPPS 459
>MGI|MGI:2385261 [details] [associations]
symbol:Cnot3 "CCR4-NOT transcription complex, subunit 3"
species:10090 "Mus musculus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:2000036 "regulation of stem cell
maintenance" evidence=ISO] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
MGI:MGI:2385261 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0000932 CTD:4849 eggNOG:COG5665 HOGENOM:HOG000184850
HOVERGEN:HBG051042 KO:K12580 OrthoDB:EOG41JZDJ EMBL:BC030332
EMBL:BC053437 EMBL:BC141041 IPI:IPI00169667 RefSeq:NP_666288.1
UniGene:Mm.358731 ProteinModelPortal:Q8K0V4 DIP:DIP-46844N
IntAct:Q8K0V4 STRING:Q8K0V4 PhosphoSite:Q8K0V4 PaxDb:Q8K0V4
PRIDE:Q8K0V4 Ensembl:ENSMUST00000038913 GeneID:232791
KEGG:mmu:232791 UCSC:uc009evl.2 GeneTree:ENSGT00390000014743
InParanoid:B2RUA7 OMA:ESIYHLP NextBio:381230 Bgee:Q8K0V4
CleanEx:MM_CNOT3 Genevestigator:Q8K0V4
GermOnline:ENSMUSG00000035632 Uniprot:Q8K0V4
Length = 751
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 186/510 (36%), Positives = 250/510 (49%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ L++ RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSI 175
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLP 234
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L
Sbjct: 174 EKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLD 230
Query: 235 LDKVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTA 294
L+ + + LV PP + + + T+ E ED
Sbjct: 231 LEDIP--QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDK 286
Query: 295 SQDSNSDVAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASNTSPVLPG 350
+ ++D PAK S V S +PAV P P P T S S+T P G
Sbjct: 287 KRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYPSG---PPPTTSALSST-PGNNG 342
Query: 351 SSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGR-------GG 403
+S+ GP +S P + + + P S PS R GG
Sbjct: 343 ASTPAAPTSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGGG 402
Query: 404 XXXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSL------- 456
A NG +V+D L + GSS Q+L
Sbjct: 403 SGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVTLSSSG--GSSASSQALGPTSGPH 460
Query: 457 -VSPLSNRMILSQAAKGNDGTGSIDSNNAG 485
+P +++ + A G S NN+G
Sbjct: 461 NPAPSTSKESSTAAPSGAGNVASGSGNNSG 490
>UNIPROTKB|F1RNH3 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 GO:GO:0000932 CTD:4849 KO:K12580 OMA:IFYYLEP
GeneTree:ENSGT00390000014743 EMBL:FP476135 RefSeq:XP_003356092.1
Ensembl:ENSSSCT00000003625 GeneID:100520963 KEGG:ssc:100520963
Uniprot:F1RNH3
Length = 719
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 166/407 (40%), Positives = 221/407 (54%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSI 175
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLP 234
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L
Sbjct: 174 EKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLD 230
Query: 235 LDKVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTA 294
L+ + + LV PP + + + T+ E ED
Sbjct: 231 LEDIP--QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDK 286
Query: 295 SQDSNSDVAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASNTSPVLPG 350
+ ++D PAK S V S +PAV P+ P P T S A +T+P G
Sbjct: 287 KRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPSYPSG---PPPTAS-ALSTTPGNNG 342
Query: 351 SSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVR 397
+ + GP +S P + + + P S PS R
Sbjct: 343 APAPAAPASALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTAQPR 389
>UNIPROTKB|E1BCS1 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 GO:GO:0000932 CTD:4849 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:DAAA02047818
IPI:IPI00685943 RefSeq:XP_002695478.1 Ensembl:ENSBTAT00000019836
GeneID:527305 KEGG:bta:527305 NextBio:20874556 Uniprot:E1BCS1
Length = 744
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 160/379 (42%), Positives = 212/379 (55%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSI 175
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLP 234
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L
Sbjct: 174 EKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLD 230
Query: 235 LDKVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTA 294
L+ + + LV PP + + + T+ E ED
Sbjct: 231 LEDIP--QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDK 286
Query: 295 SQDSNSDVAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNA--SNTSPVL 348
+ ++D PAK S V S+ +PAV P+ P A LS SN +P
Sbjct: 287 KRGRSTDSEVSQSPAKNGSKPVHSSQHPQSPAVPPSYPPGPPPAASALSATPGSNGAPAA 346
Query: 349 PGSSSVRGVFDNTGPISSS 367
+S G + P S+
Sbjct: 347 AAPASALGAKASPAPSHSA 365
>RGD|1304771 [details] [associations]
symbol:Cnot3 "CCR4-NOT transcription complex, subunit 3"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
RGD:1304771 GO:GO:0005634 GO:GO:0006355 GO:GO:0000932 CTD:4849
KO:K12580 OrthoDB:EOG41JZDJ OMA:ESIYHLP EMBL:AC103574 EMBL:AC126217
IPI:IPI00192709 RefSeq:NP_001100941.2 UniGene:Rn.212216
Ensembl:ENSRNOT00000064411 GeneID:308311 KEGG:rno:308311
UCSC:RGD:1304771 NextBio:658574 ArrayExpress:D3ZXE8 Uniprot:D3ZXE8
Length = 751
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 199/558 (35%), Positives = 273/558 (48%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ L++ RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSI 175
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLP 234
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L
Sbjct: 174 EKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLD 230
Query: 235 LDKVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTA 294
L+ + + LV PP + + + T+ E ED
Sbjct: 231 LEDIP--QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDK 286
Query: 295 SQDSNSDVAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASNTSPVLPG 350
+ ++D PAK S V S +PAV P P S PA ++A +++P G
Sbjct: 287 KRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYP-SGPPPA---TSALSSTPGNNG 342
Query: 351 SSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGR-------GG 403
+S+ GP +S P + + + P S PS R GG
Sbjct: 343 ASTPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGGG 402
Query: 404 XXXXXXXXXXXXXATAVPSNGNLGAVPLVSD----VAKRNILGAE---ERLG-SSGMVQS 455
A NG +V+D VA + G+ + LG +SG
Sbjct: 403 SGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVALSSSGGSSASSQALGPTSGPHNP 462
Query: 456 LVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVF-----TPSMGMQWRTGNSFQ 510
S L + + G+ +GS +N+ G ++ + V TPS G
Sbjct: 463 APSTLKESSTAAPSGAGSVASGS-GNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGTLL- 520
Query: 511 NQNEPGQFRGRTEI-APD 527
N P QF EI AP+
Sbjct: 521 --NGPPQFSTTPEIKAPE 536
>ZFIN|ZDB-GENE-030131-5838 [details] [associations]
symbol:cnot3b "CCR4-NOT transcription complex,
subunit 3b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
ZFIN:ZDB-GENE-030131-5838 GO:GO:0005634 GO:GO:0006355
HOVERGEN:HBG051042 KO:K12580 EMBL:BC045499 IPI:IPI00859465
RefSeq:NP_956134.1 UniGene:Dr.6354 ProteinModelPortal:Q7ZVL4
STRING:Q7ZVL4 PRIDE:Q7ZVL4 GeneID:327627 KEGG:dre:327627 CTD:327627
InParanoid:Q7ZVL4 NextBio:20810115 ArrayExpress:Q7ZVL4 Bgee:Q7ZVL4
Uniprot:Q7ZVL4
Length = 908
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 164/402 (40%), Positives = 228/402 (56%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+E+DLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVTEGVEQFEDIWKKLHNAANANQKEKYESDLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ LV+ RKLIE +MERFKI E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSI 175
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLP 234
RH+ HI LE ILR+LDND + + + +KD +E Y++ +QD DFEE + LY L
Sbjct: 174 ERHRFHIRMLETILRMLDNDSIQVDSIRKIKDDVEYYLDSSQDPDFEEN---EFLYDDLD 230
Query: 235 LDKVESLEDLVTIGPPG-----LVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQ 289
L+++ +V P G + + PAT +T+ + +++
Sbjct: 231 LEEIPL--PVVPTSPAGHPDDEIFQHSSSTPTSTTSSSPIPPSPATC-TTNSE--DEKKR 285
Query: 290 GEDTASQDSNSDVA-ARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVL 348
G T S+ S S + + SS ++S+ + IS+ A + S+AS +S +L
Sbjct: 286 GHSTDSEISQSPIKNGNQSSSLSSSSSLSSSSSGASSISLISMATLASSGSSASGSSSLL 345
Query: 349 PGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSS 390
G+ SV N+G SS+ S ++ N S+
Sbjct: 346 -GNISVP--LQNSGSYSSATQQQTQQSQQQHQPKNSASSHSN 384
>UNIPROTKB|E2R344 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 Ensembl:ENSCAFT00000004262 Uniprot:E2R344
Length = 710
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 153/364 (42%), Positives = 208/364 (57%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSI 175
DP +K K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLP 234
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L
Sbjct: 174 EKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLD 230
Query: 235 LDKVESLEDLVTIGPPGL--VKGXXXXXXXXXXXXXXXQMP---ATVISTHQQVTSVQEQ 289
L+ + + LV PP ++ P + T + +++
Sbjct: 231 LEDIP--QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKR 288
Query: 290 GEDTASQDSNSDVAARTPPAKSSG-VGSTASTPAVGPATPISINVPAQTLSNASNTSPVL 348
G T S+ S S + P S+ S A P+ P P + + + T N ++P
Sbjct: 289 GRSTDSEVSQSPAKNGSKPVHSNQHPQSPALPPSYPPGPPPATSALSTTPGNNGASTPAA 348
Query: 349 PGSS 352
P S+
Sbjct: 349 PTSA 352
>FB|FBgn0033029 [details] [associations]
symbol:l(2)NC136 "lethal (2) NC136" species:7227 "Drosophila
melanogaster" [GO:0006351 "transcription, DNA-dependent"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0022008 "neurogenesis"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 EMBL:AE013599
GO:GO:0005634 GO:GO:0005737 GO:GO:0022008 GO:GO:0006355
GO:GO:0030014 GO:GO:0000289 eggNOG:COG5665 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AY069428
EMBL:BT083390 RefSeq:NP_610176.1 UniGene:Dm.2133 IntAct:Q7K126
STRING:Q7K126 EnsemblMetazoa:FBtr0086062 EnsemblMetazoa:FBtr0331970
GeneID:35501 KEGG:dme:Dmel_CG8426 UCSC:CG8426-RA
FlyBase:FBgn0033029 InParanoid:Q7K126 OrthoDB:EOG4NVX23
ChiTaRS:l(2)NC136 GenomeRNAi:35501 NextBio:793729 Uniprot:Q7K126
Length = 844
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 155/351 (44%), Positives = 208/351 (59%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQK-----EKFEADLKKEIKKL 55
M A+RKLQGEIDR LKKV EGV+ F+ IW KV++ N NQK EK+EADLKKEIKKL
Sbjct: 1 MAATRKLQGEIDRCLKKVAEGVETFEDIWKKVHNATNTNQKQKHLQEKYEADLKKEIKKL 60
Query: 56 QRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGL 115
QR RDQIK+WI S+EIKDK +L++ R+LIE +MERFK+ E+ETKTKA+SKEGL
Sbjct: 61 QRLRDQIKSWIASAEIKDKS-------SLLENRRLIETQMERFKVVERETKTKAYSKEGL 113
Query: 116 GQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKT----RPPRLTHL 171
G K DP ++ K + R+WL + +S L+ QID +E+E+E L K K + R+ L
Sbjct: 114 GAAQKMDPAQRIKDDARNWLTSSISSLQIQIDQYESEIESLLAGKKKRLDRDKQERMDDL 173
Query: 172 ETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELY 230
+ RHK HI KLE +LRLLDND + EQVN +KD +E Y++ +Q+ DFEE + +
Sbjct: 174 RGKLDRHKFHITKLETLLRLLDNDGVEAEQVNKIKDDVEYYIDSSQEPDFEENEFIYD-- 231
Query: 231 HLLPLDKVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQG 290
++ LD+VE L T + Q P TV QQ+ + QG
Sbjct: 232 DIIGLDEVE-LSGTATTDSNNSNE-TSGSPSSVTSGGSPSQSPVTV----QQILNTSSQG 285
Query: 291 EDTASQDSNSDVAA----RTPPAKSSG--VGSTASTPAVGPATPISINVPA 335
AS S++ AA + A+S+G VG + T A + S + PA
Sbjct: 286 --AASSGSSAASAALFQQQLTAAQSNGNNVGYASDTSAASSSATTSTD-PA 333
>POMBASE|SPAC1B3.05 [details] [associations]
symbol:not3 "CCR4-Not complex subunit Not3/5 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0006402 "mRNA
catabolic process" evidence=IC] [GO:0030015 "CCR4-NOT core complex"
evidence=ISO] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
PomBase:SPAC1B3.05 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006357 GO:GO:0006351 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 HOGENOM:HOG000184850 PIR:T38023
RefSeq:NP_594789.2 STRING:O13870 EnsemblFungi:SPAC1B3.05.1
GeneID:2542126 OrthoDB:EOG4NW2V3 NextBio:20803198 Uniprot:O13870
Length = 640
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 144/379 (37%), Positives = 209/379 (55%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62
++RKLQ EI++ KKV +G+ +FD ++ K+ +++ +QKEK E DLK +IKKLQR RDQI
Sbjct: 2 SARKLQVEIEKTFKKVTDGIAIFDEVYEKLSASNSVSQKEKLEGDLKTQIKKLQRLRDQI 61
Query: 63 KTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTD 122
KTW S++IKDKK AL++ R+LIE +ME FK E+E K KAFSKEGL K D
Sbjct: 62 KTWASSNDIKDKK-------ALLENRRLIEAKMEEFKAVEREMKIKAFSKEGLSIASKLD 114
Query: 123 PKEKAKSETRDWLNNLVSELESQIDSFEAELEGL--TVKKGKTRPPRLTHL---ETSITR 177
PKEK K +T W++N V ELE Q + EAE E L T K+GK +L+HL E+ I R
Sbjct: 115 PKEKEKQDTIQWISNAVEELERQAELIEAEAESLKATFKRGKKDLSKLSHLSELESRIER 174
Query: 178 HKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDK 237
HK H KLELI+R L+N ++SPE VND+++ + YVE +Q E+F++ + LY L LD+
Sbjct: 175 HKWHQDKLELIMRRLENSQISPEAVNDIQEDIMYYVECSQS--EDFAEDENLYDELNLDE 232
Query: 238 VESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQD 297
+ D G + ++V S +D A ++
Sbjct: 233 ASASYDAERSGRSS--SSSHSPSPSASSSSSSENLLQDKAEAEEKV-SADASVQDIAEKE 289
Query: 298 S-NSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRG 356
S ++D T + + A T G IS N Q S T+P +S+V
Sbjct: 290 SLDADKELATNDQEDDEEENQAETQKDGA---ISNNENMQ--SEVQTTNPSA-STSAVTN 343
Query: 357 VFDNTGPISSSPPVNLTSS 375
+ T + S P+++++S
Sbjct: 344 ITKPTLIQNPSTPLSVSNS 362
>ASPGD|ASPL0000074489 [details] [associations]
symbol:AN4585 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0006355 EMBL:BN001303 HOGENOM:HOG000184850
OMA:ESIYHLP EnsemblFungi:CADANIAT00005852 Uniprot:C8V7V5
Length = 616
Score = 495 (179.3 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 112/234 (47%), Positives = 152/234 (64%)
Query: 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIK 63
SRK Q EID+ KKV EG+ F+ I+ K+ N Q++K E +LK+EIKKLQRYRDQIK
Sbjct: 3 SRKTQQEIDKTFKKVAEGIQTFEGIYEKIRAATNPTQRDKLEENLKREIKKLQRYRDQIK 62
Query: 64 TWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDP 123
+W +E+KDK L++ R+ IE ME+FK EKE KTKA+SKEGL + DP
Sbjct: 63 SWASGNEVKDKG-------PLLEQRRAIETCMEQFKAVEKEMKTKAYSKEGLSAASRLDP 115
Query: 124 KEKAKSETRDWLNNLVSELESQIDSFEAELEGL--TVKKGK---TRPPRLTHLETSITRH 178
K+K K ET D+L+N+V EL+ +I++ EAE E L ++KKGK T+ RL L I RH
Sbjct: 116 KDKEKVETCDFLSNMVDELQQKIEAMEAEEESLQMSMKKGKKDVTKTNRLADLAHFIERH 175
Query: 179 KAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER-NQDDF--EEFSDVDEL 229
K H+ KLEL+LR L N + QV D+K+ ++ YVE NQ D+ E+ + D+L
Sbjct: 176 KWHVNKLELLLRSLQNGNIETSQVVDLKESIKYYVEDGNQIDYAGEDETLYDDL 229
Score = 309 (113.8 bits), Expect = 9.4e-25, P = 9.4e-25
Identities = 126/426 (29%), Positives = 190/426 (44%)
Query: 16 KKVQEGVD-VFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDK 74
+K Q+ +D F + + + +K + + + K + + +IK +Q + K
Sbjct: 4 RKTQQEIDKTFKKVAEGIQTFEGIYEKIRAATNPTQRDKLEENLKREIKK-LQRYRDQIK 62
Query: 75 KVSASYEQA----LVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSE 130
++ E L++ R+ IE ME+FK EKE KTKA+SKEGL + DPK+K K E
Sbjct: 63 SWASGNEVKDKGPLLEQRRAIETCMEQFKAVEKEMKTKAYSKEGLSAASRLDPKDKEKVE 122
Query: 131 TRDWLNNLVSELESQIDSFEAELEGL--TVKKGK---TRPPRLTHLETSITRHKAHIMKL 185
T D+L+N+V EL+ +I++ EAE E L ++KKGK T+ RL L I RHK H+ KL
Sbjct: 123 TCDFLSNMVDELQQKIEAMEAEEESLQMSMKKGKKDVTKTNRLADLAHFIERHKWHVNKL 182
Query: 186 ELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDE-LYHLLPLDKVESLEDL 244
EL+LR L N + QV D+K+ ++ YVE +++ DE LY L+ + E
Sbjct: 183 ELLLRSLQNGNIETSQVVDLKESIKYYVEDGNQI--DYAGEDETLYD--DLNMGDDAEAQ 238
Query: 245 VTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDSNSDVAA 304
IG P S TS + +A S V A
Sbjct: 239 FGIGGDNDRVSSQDTQSMQDEEVEAKPKPKAEASA----TSHRRP---SAQMKSPLPVLA 291
Query: 305 RTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPI 364
P+ SS S+AS + PA P + +P +TL AS + + G+ P
Sbjct: 292 TLHPSSSS---SSAS--GMKPAPPPT-RLPGETLKYASAAAAAAASDKNGVGIAPLPPPP 345
Query: 365 SSSP------PVNLTSSTKEEDVGNF-PGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXA 417
+SP P + SST V P +++P+ V GR A
Sbjct: 346 GASPAFPSAVPASKASSTASPVVTLAQPVPKATPAAAIVAEEGRSRTPAFSPKVSAAVSA 405
Query: 418 T-AVPS 422
+ VPS
Sbjct: 406 SNTVPS 411
Score = 54 (24.1 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 19/79 (24%), Positives = 31/79 (39%)
Query: 307 PPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS 366
P A + S+ ++P V A P+ PA + S S V + + S
Sbjct: 352 PSAVPASKASSTASPVVTLAQPVPKATPAAAIVAEEGRSRTPAFSPKVSAAVSASNTVPS 411
Query: 367 SPPVNL--TSSTKEEDVGN 383
+P ++ T+STK N
Sbjct: 412 TPAMDKAETASTKPPAAAN 430
Score = 40 (19.1 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
Identities = 16/63 (25%), Positives = 20/63 (31%)
Query: 290 GEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLP 349
GE + + PP + S T A P S Q L AS + P
Sbjct: 431 GESNKENQAGEESIYHLPPGLQDLIHSFEVTKNRASANPSSQPPSVQRLLTASAANCPEP 490
Query: 350 GSS 352
G S
Sbjct: 491 GDS 493
>DICTYBASE|DDB_G0272056 [details] [associations]
symbol:DDB_G0272056 "putative CCR4-NOT complex
subunit 3" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR007207
InterPro:IPR007282 InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153
PIRSF:PIRSF005290 dictyBase:DDB_G0272056 GO:GO:0005634
GO:GO:0006355 EMBL:AAFI02000007 eggNOG:COG5665 KO:K12580
RefSeq:XP_645358.1 ProteinModelPortal:Q55AA8
EnsemblProtists:DDB0219997 GeneID:8618247 KEGG:ddi:DDB_G0272056
InParanoid:Q55AA8 OMA:GHIKSEE Uniprot:Q55AA8
Length = 866
Score = 466 (169.1 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 97/247 (39%), Positives = 155/247 (62%)
Query: 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIK 63
+RKLQGEID+ LKKV +G+ FD + KVY + NQKEK+E+DLKKEIKKLQRYRDQIK
Sbjct: 3 TRKLQGEIDKTLKKVADGIIEFDCVLKKVYSAISTNQKEKYESDLKKEIKKLQRYRDQIK 62
Query: 64 TWIQSSEIKDKKV----SASYEQALVDARKLIEREMERFKICEK-ETKTKAFSKEGLGQQ 118
WI S+++K+K S E L++ +K ++M+ F+ E+ E K K +SK+G G
Sbjct: 63 AWIASNDVKNKAALLESRKSIEMILINFKKNKIKKMDSFRHLERGEGKGK-YSKDG-GVD 120
Query: 119 PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH 178
T E AK+ + W + ++ L +Q++SF+ ELE + V+K KT R+ L+ H
Sbjct: 121 SSTKD-EMAKTHVKTWASKAIATLRAQLESFDTELENIPVRKRKTESARVEQLQKFKNNH 179
Query: 179 KAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER--NQDDFEEFSDVDELYHLLPLD 236
K H++ LE +LR++D+D + +++ +KD +E Y++ +D +EE ++ +++ P
Sbjct: 180 KYHLLALEFLLRMMDDDRIPTDEIEKIKDSVECYIDSYTQEDTYEEPGEIYSIFNFKP-H 238
Query: 237 KVESLED 243
+ +ED
Sbjct: 239 NITDIED 245
Score = 62 (26.9 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 23/89 (25%), Positives = 38/89 (42%)
Query: 299 NSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTL-SNASNTSPVLPGSSSVRGV 357
++ + + P S + +T +G TP + N+ QT + AS SP SS +
Sbjct: 316 STSIQQQLPQPNKSPILQPNNTARIGSPTPTT-NLSQQTQPTKASTPSPTF--SSVTKTS 372
Query: 358 FDNTGPISSSPPVNLTSSTKE-EDVGNFP 385
N S S P +T ++ +GN P
Sbjct: 373 IKNDNKQSHSQPTPVTIPNQQFPSLGNVP 401
Score = 58 (25.5 bits), Expect = 6.7e-47, Sum P(2) = 6.7e-47
Identities = 31/110 (28%), Positives = 48/110 (43%)
Query: 288 EQGEDTASQDSNS---DVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNT 344
+ E ++ +DSNS D TP ++ TA+ A PI I+ Q N
Sbjct: 274 DDDESSSKKDSNSENEDEIKETPKVATA----TATATAEKSTQPI-ISTSIQQQLPQPNK 328
Query: 345 SPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLT 394
SP+L +++ R G S +P NL+ T+ P + S+PS T
Sbjct: 329 SPILQPNNTAR-----IG--SPTPTTNLSQQTQ-------PTKASTPSPT 364
>WB|WBGene00003826 [details] [associations]
symbol:ntl-3 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0040035 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AL132860 EMBL:Z92826
RefSeq:NP_001076652.1 UniGene:Cel.9672 ProteinModelPortal:G5EFX8
IntAct:G5EFX8 EnsemblMetazoa:Y56A3A.1a.1 EnsemblMetazoa:Y56A3A.1a.2
GeneID:176614 KEGG:cel:CELE_Y56A3A.1 CTD:176614 WormBase:Y56A3A.1a
NextBio:893304 Uniprot:G5EFX8
Length = 701
Score = 460 (167.0 bits), Expect = 1.5e-45, Sum P(2) = 1.5e-45
Identities = 107/256 (41%), Positives = 155/256 (60%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKL EID+ KK+ EGV++F+ K+++ ++ NQ++K++ DLKKEIKKLQR RD
Sbjct: 1 MAEKRKLLAEIDKCFKKIDEGVELFEETMEKMHEANSDNQRDKYQDDLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
Q+K W +SEIKDK SY RKLIE+ ME+FK E+E KTK SK GL + K
Sbjct: 61 QVKNWQNASEIKDKDKLNSY-------RKLIEQRMEQFKDVERENKTKPHSKLGLSAEEK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV------KKGKT--------RPP 166
DPKEK K+ET DW+ + + L ++D E +LE L+ K+GK R
Sbjct: 114 LDPKEKEKAETMDWIQHQIRSLNEEVDRTEMQLESLSNTDTGKGKRGKKEDAKTKNEREK 173
Query: 167 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVND-VKDLLEDYVER-NQDDFEEFS 224
R+ L+ + R HI KLE+ +R++ N+ L+ + V + +K+ +E YVE N++D EE
Sbjct: 174 RVEGLKHHLERINFHIEKLEICMRMISNESLNAKMVLETLKEPIETYVEMMNEEDSEEAD 233
Query: 225 --DVDELYHLLPLDKV 238
D D+ Y L L+K+
Sbjct: 234 NYDPDDAYDELNLEKL 249
Score = 42 (19.8 bits), Expect = 1.5e-45, Sum P(2) = 1.5e-45
Identities = 20/88 (22%), Positives = 35/88 (39%)
Query: 294 ASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSS 353
AS+ + + P K S +T+ A PAT + T S+ P++ +
Sbjct: 397 ASKPVLAQSVSEMPQKKESITSTTSRGSAAAPAT--TTTTTTTTTSSEPAEVPLVV-QQT 453
Query: 354 VRGVFDNTGPISSSPPVNLTSSTKEEDV 381
V F N G S + LT +++ +
Sbjct: 454 VSETFVN-GVDSPAAATRLTQQERQQQL 480
>UNIPROTKB|G5EFX8 [details] [associations]
symbol:ntl-3 "Protein NTL-3, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0040035 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AL132860 EMBL:Z92826
RefSeq:NP_001076652.1 UniGene:Cel.9672 ProteinModelPortal:G5EFX8
IntAct:G5EFX8 EnsemblMetazoa:Y56A3A.1a.1 EnsemblMetazoa:Y56A3A.1a.2
GeneID:176614 KEGG:cel:CELE_Y56A3A.1 CTD:176614 WormBase:Y56A3A.1a
NextBio:893304 Uniprot:G5EFX8
Length = 701
Score = 460 (167.0 bits), Expect = 1.5e-45, Sum P(2) = 1.5e-45
Identities = 107/256 (41%), Positives = 155/256 (60%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKL EID+ KK+ EGV++F+ K+++ ++ NQ++K++ DLKKEIKKLQR RD
Sbjct: 1 MAEKRKLLAEIDKCFKKIDEGVELFEETMEKMHEANSDNQRDKYQDDLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
Q+K W +SEIKDK SY RKLIE+ ME+FK E+E KTK SK GL + K
Sbjct: 61 QVKNWQNASEIKDKDKLNSY-------RKLIEQRMEQFKDVERENKTKPHSKLGLSAEEK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV------KKGKT--------RPP 166
DPKEK K+ET DW+ + + L ++D E +LE L+ K+GK R
Sbjct: 114 LDPKEKEKAETMDWIQHQIRSLNEEVDRTEMQLESLSNTDTGKGKRGKKEDAKTKNEREK 173
Query: 167 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVND-VKDLLEDYVER-NQDDFEEFS 224
R+ L+ + R HI KLE+ +R++ N+ L+ + V + +K+ +E YVE N++D EE
Sbjct: 174 RVEGLKHHLERINFHIEKLEICMRMISNESLNAKMVLETLKEPIETYVEMMNEEDSEEAD 233
Query: 225 --DVDELYHLLPLDKV 238
D D+ Y L L+K+
Sbjct: 234 NYDPDDAYDELNLEKL 249
Score = 42 (19.8 bits), Expect = 1.5e-45, Sum P(2) = 1.5e-45
Identities = 20/88 (22%), Positives = 35/88 (39%)
Query: 294 ASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSS 353
AS+ + + P K S +T+ A PAT + T S+ P++ +
Sbjct: 397 ASKPVLAQSVSEMPQKKESITSTTSRGSAAAPAT--TTTTTTTTTSSEPAEVPLVV-QQT 453
Query: 354 VRGVFDNTGPISSSPPVNLTSSTKEEDV 381
V F N G S + LT +++ +
Sbjct: 454 VSETFVN-GVDSPAAATRLTQQERQQQL 480
>CGD|CAL0002492 [details] [associations]
symbol:NOT5 species:5476 "Candida albicans" [GO:0030445
"yeast-form cell wall" evidence=IDA] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0016337 "cell-cell adhesion" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0030015 "CCR4-NOT core
complex" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 CGD:CAL0002492
GO:GO:0005634 GO:GO:0030445 GO:GO:0071216 GO:GO:0036180
GO:GO:0009405 GO:GO:0006355 GO:GO:0016337 EMBL:AACQ01000053
EMBL:AACQ01000052 KO:K12580 RefSeq:XP_717570.1 RefSeq:XP_717644.1
STRING:Q5A755 GeneID:3640763 GeneID:3640828 KEGG:cal:CaO19.12573
KEGG:cal:CaO19.5107 Uniprot:Q5A755
Length = 662
Score = 446 (162.1 bits), Expect = 9.4e-45, Sum P(2) = 9.4e-45
Identities = 134/415 (32%), Positives = 209/415 (50%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62
++RKLQ E D++ KK+ EG+ FD I +K+ T++A+Q+EK E DLKKE+KKLQR RDQ+
Sbjct: 2 SARKLQQEFDKLNKKISEGLQAFDEIKDKINATESASQREKLENDLKKELKKLQRSRDQL 61
Query: 63 KTWIQSSEIK-DKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGL---GQQ 118
K W+ S IK DK V L + R IE M++FK EK +K K FS EGL QQ
Sbjct: 62 KQWLGDSSIKLDKNV-------LQENRTKIEHAMDQFKELEKSSKIKQFSNEGLELQSQQ 114
Query: 119 PKTDPKEKAK-SETRDWLNNLVSELESQIDSFEAELEGLTV----KKGKTRPPRLTHLET 173
++ + AK E ++N ++ +L Q + E EL+ L+ K G + + ++
Sbjct: 115 KRSRFGDDAKYQEACTYINEVIEQLNGQNEELEQELDSLSGQSKRKGGSSIQSSIDDVKY 174
Query: 174 SITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLL 233
I R+ +HI KLE +L LDND+L P +++D+KD L+ YVE NQD E++ + DE Y L
Sbjct: 175 KIERNNSHISKLEEVLENLDNDKLDPARIDDIKDDLDYYVENNQD--EDYVEYDEFYDQL 232
Query: 234 PLDKVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDT 293
+D+ ED V + G + + QQ +
Sbjct: 233 EVDE----EDDVEV--QGSLAQMAAETEDERRRDEERKREEKEKEKQQQNPPRTSSSVSS 286
Query: 294 ASQDSNSDVAARTPPA---KSS-----GVG---STASTPAVGPATPISINVPAQTLSNAS 342
+S + +++ TPPA K S +G + +++ A +TP+ P TL+ A
Sbjct: 287 SSSSNQNNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTPVKKLKP--TLAPAP 344
Query: 343 NTSPVLPGSSSVRGV-FDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSP-SLTD 395
P+ G+S + T SS+ ++ + + + N R SP + TD
Sbjct: 345 APPPITSGTSYSNAIKAAQTASTSSTSNSSIAHTANDNNNTNKGNRSVSPLASTD 399
Score = 46 (21.3 bits), Expect = 9.4e-45, Sum P(2) = 9.4e-45
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 474 DGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNS 508
DG SI NA + ++ G VF QW + +S
Sbjct: 555 DGIDSISKYNAAKELSRRGWVFNTEFS-QWFSKDS 588
>UNIPROTKB|Q5A755 [details] [associations]
symbol:NOT5 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Not5p" species:237561 "Candida albicans SC5314"
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0016337 "cell-cell
adhesion" evidence=IMP] [GO:0030445 "yeast-form cell wall"
evidence=IDA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0071216 "cellular response to biotic stimulus"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
CGD:CAL0002492 GO:GO:0005634 GO:GO:0030445 GO:GO:0071216
GO:GO:0036180 GO:GO:0009405 GO:GO:0006355 GO:GO:0016337
EMBL:AACQ01000053 EMBL:AACQ01000052 KO:K12580 RefSeq:XP_717570.1
RefSeq:XP_717644.1 STRING:Q5A755 GeneID:3640763 GeneID:3640828
KEGG:cal:CaO19.12573 KEGG:cal:CaO19.5107 Uniprot:Q5A755
Length = 662
Score = 446 (162.1 bits), Expect = 9.4e-45, Sum P(2) = 9.4e-45
Identities = 134/415 (32%), Positives = 209/415 (50%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62
++RKLQ E D++ KK+ EG+ FD I +K+ T++A+Q+EK E DLKKE+KKLQR RDQ+
Sbjct: 2 SARKLQQEFDKLNKKISEGLQAFDEIKDKINATESASQREKLENDLKKELKKLQRSRDQL 61
Query: 63 KTWIQSSEIK-DKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGL---GQQ 118
K W+ S IK DK V L + R IE M++FK EK +K K FS EGL QQ
Sbjct: 62 KQWLGDSSIKLDKNV-------LQENRTKIEHAMDQFKELEKSSKIKQFSNEGLELQSQQ 114
Query: 119 PKTDPKEKAK-SETRDWLNNLVSELESQIDSFEAELEGLTV----KKGKTRPPRLTHLET 173
++ + AK E ++N ++ +L Q + E EL+ L+ K G + + ++
Sbjct: 115 KRSRFGDDAKYQEACTYINEVIEQLNGQNEELEQELDSLSGQSKRKGGSSIQSSIDDVKY 174
Query: 174 SITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLL 233
I R+ +HI KLE +L LDND+L P +++D+KD L+ YVE NQD E++ + DE Y L
Sbjct: 175 KIERNNSHISKLEEVLENLDNDKLDPARIDDIKDDLDYYVENNQD--EDYVEYDEFYDQL 232
Query: 234 PLDKVESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDT 293
+D+ ED V + G + + QQ +
Sbjct: 233 EVDE----EDDVEV--QGSLAQMAAETEDERRRDEERKREEKEKEKQQQNPPRTSSSVSS 286
Query: 294 ASQDSNSDVAARTPPA---KSS-----GVG---STASTPAVGPATPISINVPAQTLSNAS 342
+S + +++ TPPA K S +G + +++ A +TP+ P TL+ A
Sbjct: 287 SSSSNQNNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTPVKKLKP--TLAPAP 344
Query: 343 NTSPVLPGSSSVRGV-FDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSP-SLTD 395
P+ G+S + T SS+ ++ + + + N R SP + TD
Sbjct: 345 APPPITSGTSYSNAIKAAQTASTSSTSNSSIAHTANDNNNTNKGNRSVSPLASTD 399
Score = 46 (21.3 bits), Expect = 9.4e-45, Sum P(2) = 9.4e-45
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 474 DGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNS 508
DG SI NA + ++ G VF QW + +S
Sbjct: 555 DGIDSISKYNAAKELSRRGWVFNTEFS-QWFSKDS 588
>SGD|S000001300 [details] [associations]
symbol:NOT3 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IDA;IPI] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] [GO:0030015 "CCR4-NOT core complex"
evidence=IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IMP] [GO:0016567 "protein ubiquitination"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
SGD:S000001300 GO:GO:0005634 GO:GO:0005737 EMBL:BK006942
GO:GO:0006351 GO:GO:0016567 EMBL:Z46861 GO:GO:0032968 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 KO:K12580 GeneTree:ENSGT00390000014743
KO:K10661 RefSeq:NP_012234.3 GeneID:854781 KEGG:sce:YIL030C
OrthoDB:EOG4NW2V3 EMBL:X04289 EMBL:AY692897 PIR:S49940
RefSeq:NP_012226.3 ProteinModelPortal:P06102 DIP:DIP-2256N
IntAct:P06102 MINT:MINT-426406 STRING:P06102 PaxDb:P06102
PeptideAtlas:P06102 EnsemblFungi:YIL038C GeneID:854773
KEGG:sce:YIL038C CYGD:YIL038c HOGENOM:HOG000113831 OMA:MEKYKAV
NextBio:977541 Genevestigator:P06102 GermOnline:YIL038C
Uniprot:P06102
Length = 836
Score = 423 (154.0 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 96/246 (39%), Positives = 151/246 (61%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYD-TDNANQKEKFEADLKKEIKKLQRYRDQ 61
A RKLQ E+DRV KK+ EG+++F+S + + T+N +QK+K E+DLK+E+KKLQR R+Q
Sbjct: 2 AHRKLQQEVDRVFKKINEGLEIFNSYYERHESCTNNPSQKDKLESDLKREVKKLQRLREQ 61
Query: 62 IKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKT 121
IK+W S +IKDK +L+D R+ +E ME++K EK +K KA+S L +
Sbjct: 62 IKSWQSSPDIKDK-------DSLLDYRRSVEIAMEKYKAVEKASKEKAYSNISLKKSETL 114
Query: 122 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV--KKGKTRPPRLTHLETSITRHK 179
DP+E+ + + ++L+ ++ ELE Q DS + E++ L + KK KT + R +
Sbjct: 115 DPQERERRDISEYLSQMIDELERQYDSLQVEIDKLLLLNKKKKTSSTTNDEKKEQYKRFQ 174
Query: 180 A----HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPL 235
A H ++EL LRLL N+EL P+ V +V+D + +VE NQD +F + + +Y L L
Sbjct: 175 ARYRWHQQQMELALRLLANEELDPQDVKNVQDDINYFVESNQDP--DFVEDETIYDGLNL 232
Query: 236 DKVESL 241
E++
Sbjct: 233 QSNEAI 238
Score = 70 (29.7 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 31/129 (24%), Positives = 59/129 (45%)
Query: 277 ISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQ 336
+ ++VTS +T+++ + A T +S +GS +TP + ++ +S+ P
Sbjct: 411 VEKDRKVTSASSTISNTSTKTPTTAAATTTSSNANSRIGSALNTPKLSTSS-LSLQ-PDN 468
Query: 337 T--LSNASNTSPVLP-GSSSVRG---VFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSS 390
T S+A+ + VL G+++V F S P V+L ++ K E ++
Sbjct: 469 TGASSSAATAAAVLAAGAAAVHQNNQAFYRNMSSSHHPLVSLATNPKSEHEVATTVNQNG 528
Query: 391 PSLTDVRVM 399
P T +VM
Sbjct: 529 PENTTKKVM 537
Score = 46 (21.3 bits), Expect = 5.1e-41, Sum P(2) = 5.1e-41
Identities = 23/85 (27%), Positives = 36/85 (42%)
Query: 309 AKSSGVGST-ASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSS 367
AK + +T A+ P GP++ S +P S + SP SSS + + T P +
Sbjct: 285 AKLAAKNATGAAIPVAGPSSTPSPVIPVADASKETERSP----SSSP--IHNATKP-EEA 337
Query: 368 PPVNLTSSTKEEDVGNFPGRRSSPS 392
++ S D P + SPS
Sbjct: 338 VKTSIKSPRSSAD-NLLPSLQKSPS 361
Score = 45 (20.9 bits), Expect = 6.4e-41, Sum P(2) = 6.4e-41
Identities = 22/98 (22%), Positives = 42/98 (42%)
Query: 306 TPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNT-GPI 364
T PAK +G A + + + T+SN S +P +++ ++ G
Sbjct: 392 TLPAKPAGELKWAVAASQAVEKDRKVTSASSTISNTSTKTPTTAAATTTSSNANSRIGSA 451
Query: 365 SSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRG 402
++P ++ +S + + D N G SS + T V+ G
Sbjct: 452 LNTPKLSTSSLSLQPD--N-TGASSSAA-TAAAVLAAG 485
Score = 45 (20.9 bits), Expect = 6.4e-41, Sum P(2) = 6.4e-41
Identities = 26/111 (23%), Positives = 45/111 (40%)
Query: 288 EQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNA-SNTSP 346
++ +A+ ++ ++V + G+T PA PA P A S A
Sbjct: 357 QKSPSSATPETPTNVHTHIHQTPNGITGATTLKPATLPAKPAGELKWAVAASQAVEKDRK 416
Query: 347 VLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVG---NFPGRRSSPSLT 394
V SS++ T P +++ TSS +G N P + S+ SL+
Sbjct: 417 VTSASSTISNTSTKT-PTTAA--ATTTSSNANSRIGSALNTP-KLSTSSLS 463
Score = 44 (20.5 bits), Expect = 8.2e-41, Sum P(2) = 8.2e-41
Identities = 16/92 (17%), Positives = 38/92 (41%)
Query: 298 SNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGV 357
S S ++ + +S +TA+ A + N A + +S+ P++ +++ +
Sbjct: 458 STSSLSLQPDNTGASSSAATAAAVLAAGAAAVHQNNQAFYRNMSSSHHPLVSLATNPKSE 517
Query: 358 FDNTGPISSSPPVNLTSSTKEEDVGNFPGRRS 389
+ ++ + P N T E+ P R+
Sbjct: 518 HEVATTVNQNGPENTTKKVMEQKEEESPEERN 549
>UNIPROTKB|H7C148 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 Pfam:PF04065 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H7C148 Ensembl:ENST00000440571 Uniprot:H7C148
Length = 375
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 123/380 (32%), Positives = 172/380 (45%)
Query: 88 RKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQID 147
RKLIE +MERFK+ E+ETKTKA+SKEGLG K DP +K K E WL N + L Q+D
Sbjct: 2 RKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQWLTNTIDTLNMQVD 61
Query: 148 SFEAELEGLTV----KKGKT--RPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQ 201
FE+E+E L+V KKG + R+ L+ I +H+ H+ LE ILR+LDND + +
Sbjct: 62 QFESEVESLSVQTRKKKGDKDQKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVDA 121
Query: 202 VNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGXXXXX 260
+ +KD +E YV+ +QD DFEE + LY L L+ + + LV PP
Sbjct: 122 IRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDLEDIP--QALVATSPPSHSHMEDEIF 176
Query: 261 XXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAK--SSGVGSTA 318
+ + + T+ E ED + ++D PAK S V S
Sbjct: 177 NQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQ 234
Query: 319 --STPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSST 376
+PAV P P S PA ++A +T+P G + GP +S P + + +
Sbjct: 235 HPQSPAVPPTYP-SGPPPA---ASALSTTPGNNGVPAPAAPPSALGPKASPAPSHNSGTP 290
Query: 377 KEEDVGNFPGRRSSPSLTD-----VRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPL 431
P S PS T V+ G GG ++A G
Sbjct: 291 APYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATS 350
Query: 432 VSDVAKRNILGAEERLGSSG 451
S V + AE L SSG
Sbjct: 351 YSSVVADS--PAEVALSSSG 368
>SGD|S000006276 [details] [associations]
symbol:NOT5 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IPI] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0030015 "CCR4-NOT core complex" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IDA;IPI]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0016567 "protein
ubiquitination" evidence=IMP] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IDA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IMP]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 SGD:S000006276
GO:GO:0005634 GO:GO:0005737 GO:GO:0016567 EMBL:Z71255 EMBL:BK006949
GO:GO:0006368 EMBL:U51033 EMBL:Z49219 GO:GO:0032968 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 HOGENOM:HOG000184850
GeneTree:ENSGT00390000014743 GO:GO:0031087 OrthoDB:EOG4NW2V3
EMBL:AY692887 PIR:S54093 RefSeq:NP_015397.1
ProteinModelPortal:Q12514 DIP:DIP-2257N IntAct:Q12514
MINT:MINT-420084 STRING:Q12514 PaxDb:Q12514 PeptideAtlas:Q12514
EnsemblFungi:YPR072W GeneID:856186 KEGG:sce:YPR072W CYGD:YPR072w
OMA:HPTSIFF NextBio:981366 Genevestigator:Q12514 GermOnline:YPR072W
Uniprot:Q12514
Length = 560
Score = 339 (124.4 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
Identities = 82/212 (38%), Positives = 127/212 (59%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTD--NANQKEKFEADLKKEIKKLQRYRD 60
+ RKLQ +ID++LKKV+EG++ FD I+ K TD N++ +EK E+DLK+EIKKLQ++RD
Sbjct: 2 SQRKLQQDIDKLLKKVKEGIEDFDDIYEKFQSTDPSNSSHREKLESDLKREIKKLQKHRD 61
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ ++KDK + L+ R+LIE MERFK EK KTK FSKE L P
Sbjct: 62 QIKTWLSKEDVKDK------QSVLMTNRRLIENGMERFKSVEKLMKTKQFSKEAL-TNPD 114
Query: 121 T--DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH 178
DPKE K + ++++ + EL+ Q++ +EA+ ++ + + +LE + +
Sbjct: 115 IIKDPKELKKRDQVLFIHDCLDELQKQLEQYEAQENEEQTERHEFH---IANLENILKKL 171
Query: 179 KAHIMKLELILRLLDNDELSPEQVNDVKDLLE 210
+ + M E + D+ + E ND D +E
Sbjct: 172 QNNEMDPEPVEEFQDDIKYYVEN-NDDPDFIE 202
Score = 183 (69.5 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 67/222 (30%), Positives = 107/222 (48%)
Query: 16 KKVQEGVD-VFDSIWNKVYDTDNANQK-EKFEADLKKEIKKLQR-YRDQIKTWIQS--SE 70
+K+Q+ +D + + + D D+ +K + + +KL+ + +IK +Q +
Sbjct: 4 RKLQQDIDKLLKKVKEGIEDFDDIYEKFQSTDPSNSSHREKLESDLKREIKK-LQKHRDQ 62
Query: 71 IK---DKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 127
IK K+ + L+ R+LIE MERFK EK KTK FSKE L P K+
Sbjct: 63 IKTWLSKEDVKDKQSVLMTNRRLIENGMERFKSVEKLMKTKQFSKEAL-TNPDII-KDPK 120
Query: 128 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLEL 187
+ + RD V + +D + +LE ++ E RH+ HI LE
Sbjct: 121 ELKKRDQ----VLFIHDCLDELQKQLEQYEAQEN----------EEQTERHEFHIANLEN 166
Query: 188 ILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDE 228
IL+ L N+E+ PE V + +D ++ YVE N D DF E+ + E
Sbjct: 167 ILKKLQNNEMDPEPVEEFQDDIKYYVENNDDPDFIEYDTIYE 208
Score = 47 (21.6 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 298 SNSDVAARTP--PAKSSGVGSTASTPAVGPATPISINVPAQTLSNAS 342
S SD A TP P S S +STP TP+S + P T+ + S
Sbjct: 256 SISD-RATTPIAPGVESASQSISSTP-----TPVSTDTPLHTVKDDS 296
>UNIPROTKB|H7C3F5 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 Pfam:PF04065 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H7C3F5 Ensembl:ENST00000447684 Uniprot:H7C3F5
Length = 106
Score = 213 (80.0 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 40/75 (53%), Positives = 52/75 (69%)
Query: 90 LIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSF 149
LIE +MERFK+ E+ETKTKA+SKEGLG K DP +K K E WL N + L Q+D F
Sbjct: 2 LIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQWLTNTIDTLNMQVDQF 61
Query: 150 EAELEGLTVKKGKTR 164
E+E+E L+V+ K +
Sbjct: 62 ESEVESLSVQTRKKK 76
>DICTYBASE|DDB_G0289701 [details] [associations]
symbol:DDB_G0289701 "ezrin/radixin/moesin C-terminal
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0016020 "membrane" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0005215 "transporter activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR014161
InterPro:IPR015943 dictyBase:DDB_G0289701 GO:GO:0016020
Gene3D:2.130.10.10 GO:GO:0005215 EMBL:AAFI02000148 eggNOG:NOG12793
TIGRFAMs:TIGR02794 RefSeq:XP_636066.1 PRIDE:Q54H52
EnsemblProtists:DDB0235251 GeneID:8627276 KEGG:ddi:DDB_G0289701
InParanoid:Q54H52 OMA:ENYRHEV Uniprot:Q54H52
Length = 1704
Score = 97 (39.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 53/230 (23%), Positives = 78/230 (33%)
Query: 290 GEDTASQDSNSDVAARTPPAKSSGVGSTASTPAV-GPATPISINVPAQTLSNASNTSPVL 348
G A Q S+ + +P +S GST++TP+V G + S T+P
Sbjct: 1393 GAKPAPQTSSVFGSTSSPSTTTSAFGSTSTTPSVFGNTSAFG--------GGGSTTTPTT 1444
Query: 349 P--GSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGXXX 406
GSSS F T S+P + S F G S+P+ G
Sbjct: 1445 SAFGSSSTTPAFGGTPAFGSAPTTSAFGSAPTTTTSAF-GSSSTPAFGGTSAFGSAPTTS 1503
Query: 407 XXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMIL 466
+ P+ G+ P S GA GS+ + S +
Sbjct: 1504 AFGSTPATGAFGSAPTTSAFGSTPATSAFGSTPTTGA---FGSTPTTGAFGSTPTTSAFG 1560
Query: 467 SQAAKGNDGTGSIDSNNA-GETVAMAGRVFTPSMGMQWRTGNSFQNQNEP 515
S G GS + +A G T A T + G T N+F + + P
Sbjct: 1561 STPTTG--AFGSTPTTSAFGSTSAFGSTPTTSAFGGA-PTTNAFGSSSTP 1607
Score = 96 (38.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 41/143 (28%), Positives = 71/143 (49%)
Query: 26 DSIWNKVYDTDNA--NQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQA 83
+S++ K D + ++EK E + ++ KL+R + K Q+ E+KDK + E+
Sbjct: 1111 NSLFTKNLDLEKEAKERQEKIERETRELQDKLEREEREAKEK-QARELKDKLEREAKEK- 1168
Query: 84 LVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSE-L 142
AR+L E++ E+E K KA KE +Q + + KEKA+ E R+ + E L
Sbjct: 1169 --QARELKEKQ-------EREAKEKA-EKEANEKQER-EAKEKAEKEAREKIEKEAKEKL 1217
Query: 143 ESQI-DSFEAELEGLTVKKGKTR 164
E + + E E + K+ K +
Sbjct: 1218 EREAKEKLEREAKEKAEKEAKEK 1240
Score = 89 (36.4 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 38/147 (25%), Positives = 75/147 (51%)
Query: 4 SRKLQGEIDRVLKKVQE--GVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQ 61
+R+LQ +++R ++ +E ++ D + + + KEK E + K++ +K +
Sbjct: 1135 TRELQDKLEREEREAKEKQARELKDKLEREAKEKQARELKEKQEREAKEKAEKEANEK-- 1192
Query: 62 IKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAF--SKEGLGQQP 119
Q E K+K + E+ +A++ +ERE + K+ E+E K KA +KE L ++
Sbjct: 1193 -----QEREAKEKAEKEAREKIEKEAKEKLEREAKE-KL-EREAKEKAEKEAKEKLEKEA 1245
Query: 120 KT----DPKEKAKSETRDWLNNLVSEL 142
K + KEKA+ ++ + NN + L
Sbjct: 1246 KEKLEKEAKEKAEKDSAN-ANNALGAL 1271
Score = 84 (34.6 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 35/139 (25%), Positives = 69/139 (49%)
Query: 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD--QIKTWIQ 67
++++ K+ QE ++ + + KEK +LK ++++ + + ++K Q
Sbjct: 1119 DLEKEAKERQEKIERETRELQDKLEREEREAKEKQARELKDKLEREAKEKQARELKEK-Q 1177
Query: 68 SSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 127
E K+K + E+ +A++ E+E R KI EKE K K +E ++ + + KEKA
Sbjct: 1178 EREAKEKAEKEANEKQEREAKEKAEKEA-REKI-EKEAKEK-LEREAK-EKLEREAKEKA 1233
Query: 128 KSETRDWLNNLVSE-LESQ 145
+ E ++ L E LE +
Sbjct: 1234 EKEAKEKLEKEAKEKLEKE 1252
>DICTYBASE|DDB_G0288067 [details] [associations]
symbol:mf12 species:44689 "Dictyostelium discoideum"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR015880 SMART:SM00355
dictyBase:DDB_G0288067 GO:GO:0008270 GenomeReviews:CM000154_GR
GO:GO:0005622 EMBL:AAFI02000109 RefSeq:XP_001134526.1
EnsemblProtists:DDB0233045 GeneID:8626468 KEGG:ddi:DDB_G0288067
eggNOG:euNOG31986 OMA:FDCLEND Uniprot:Q1ZXD8
Length = 1517
Score = 115 (45.5 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 51/225 (22%), Positives = 107/225 (47%)
Query: 7 LQGEI-DRVLKKVQEGVDVFDSIWNKVY-DTDNANQKEKFEADLKKEIKKLQRYRDQIKT 64
L EI + +L +V E ++ + K+Y D KE+ E +L++E ++L+R R+ +
Sbjct: 518 LLSEIAEEILNEVVE--ELCGKVSKKIYLDDKRKKNKEEKERELERE-RELERERELERE 574
Query: 65 WIQSSEIKDKKVSASYE----QALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
+ +IK+K++ E + ++ KL+ERE ER KE K K +E + +
Sbjct: 575 --RERQIKEKELERERELERERERIEKEKLLERERER-----KE-KEKQLEREREQLRLE 626
Query: 121 TDPKEKAKSETRDWLNNLVSE-LESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHK 179
+ KE+ K ++ + L+NLV E L+ I +E+ T ++ + + + +
Sbjct: 627 KEEKERLKQQSEE-LDNLVDEILDELIFDQVSEIATTTYQEYLSNKNKQQQQILQQQQQQ 685
Query: 180 AHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFS 224
+ + ++L +L +Q + L + +++ Q ++ S
Sbjct: 686 QQQQQQQQQQQILQQQQLQQQQQQQQQQLQQQQLQQQQQQLQQQS 730
Score = 71 (30.1 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 24/95 (25%), Positives = 43/95 (45%)
Query: 277 ISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQ 336
I HQQ Q+Q + Q S + ++ PP KSS P + +IN+
Sbjct: 834 IHQHQQQQQQQQQQQQQQQQLSPTPIS---PP-KSS-----FQNPLLS-----NININNN 879
Query: 337 TLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVN 371
+ + P+ P ++S+ G ++T P++ P+N
Sbjct: 880 PMKQSITQKPISPSNNSMNGPINSTNPLNPIGPIN 914
>DICTYBASE|DDB_G0302588 [details] [associations]
symbol:DDB_G0302588 "RanBP2-type zinc finger"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001876 PROSITE:PS01358 SMART:SM00547
dictyBase:DDB_G0302588 GO:GO:0008270 EMBL:AAFI02000003
GO:GO:0005622 RefSeq:XP_002649209.1 EnsemblProtists:DDB0302589
GeneID:8616202 KEGG:ddi:DDB_G0302588 OMA:VKFESPA Uniprot:C7FZW3
Length = 3566
Score = 124 (48.7 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 52/203 (25%), Positives = 95/203 (46%)
Query: 30 NKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARK 89
N +++ N +KE E D +E +L+ +D++K +E KD+ E D K
Sbjct: 2654 NPTFESIN-KEKESVE-DKNQEKDELKDEKDELK---DENEKKDENEKKE-ETVESDKEK 2707
Query: 90 LIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSF 149
E +E K + K + +E L + ++D KEK K ET + + E + + D
Sbjct: 2708 EKEETLEETKQSIESDKKEEKKEEKLEEIVQSD-KEKEKEETLEETKQSI-ESDKKEDEK 2765
Query: 150 EAELEGLTVK-KGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND-ELSPEQ-VNDVK 206
E +LE + K K + L + SI K K E + ++ +D E E+ + ++K
Sbjct: 2766 EEKLEEIVESDKEKEKEETLEETKQSIESDKKEDEKEEKLEEIVQSDKEKEKEETLEEIK 2825
Query: 207 DLLEDYVERNQDDFEE-FSDVDE 228
+E ++ +D+ E+ FS ++E
Sbjct: 2826 QSIESESDKKEDEMEKVFSRIEE 2848
Score = 62 (26.9 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 28/90 (31%), Positives = 42/90 (46%)
Query: 309 AKSSGVGSTASTPAVGPA--TPISINVPAQT----LSNASNTSPVLPGSSSVRGVFDNTG 362
A S GST + P+ G + P++IN P T + S TS SSS +F +T
Sbjct: 3196 AFGSSFGST-TIPSFGQSQVNPLTIN-PTSTSPTPVFGGSTTSQF--SSSSPAPIFGSTA 3251
Query: 363 PISSSPPVNLTSSTKEEDVGNFPGRRSSPS 392
I + ++ +SS+ E+ P SPS
Sbjct: 3252 TIKTFGDLSKSSSSNNENKDQ-PSSSPSPS 3280
Score = 51 (23.0 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 18 VQEGVDVFDSIWNKVYDTDNANQKEKFEAD 47
+Q + + + +WNK D NAN + ++ D
Sbjct: 725 IQSLITLMNQVWNKCQDF-NANDLDYYQVD 753
>UNIPROTKB|D4AD67 [details] [associations]
symbol:Ktn1 "Protein Ktn1" species:10116 "Rattus
norvegicus" [GO:0007018 "microtubule-based movement" evidence=IEA]
[GO:0019894 "kinesin binding" evidence=IEA] InterPro:IPR024854
GO:GO:0007018 OrthoDB:EOG4Z62N5 PANTHER:PTHR18864
GeneTree:ENSGT00530000063895 IPI:IPI00392181
Ensembl:ENSRNOT00000037854 ArrayExpress:D4AD67 Uniprot:D4AD67
Length = 1272
Score = 128 (50.1 bits), Expect = 0.00024, P = 0.00024
Identities = 67/259 (25%), Positives = 122/259 (47%)
Query: 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ-RYRDQIK 63
+K E D L+ V+E ++ + + N + L KE+++L+ + DQ+
Sbjct: 736 KKCIQEKDEKLRTVEELLET--GLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVP 793
Query: 64 TWIQSSEIKD-KKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEG--LGQQPK 120
++ S I+D KKV + + +L+E E+ K+ KE +A +E L ++
Sbjct: 794 -FV--SLIEDLKKVIHEKDGQIKSVEELLEVEL--LKVANKEKTVQALKQEIEILKEEIG 848
Query: 121 TDPKEKAK-----SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR---PPRLTHLE 172
EKA S+ ++ L NL+ E Q+DS +A LE LT ++ T+ PR LE
Sbjct: 849 NAQLEKAHQLSVTSQVQE-LQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELE 907
Query: 173 TSITRHKAHIMKLELILRLLDND-ELSPEQVNDVKD---LLEDYVER-NQDDFEE--FSD 225
+ I ++E IL+ +D E + +V+D L + VE+ N + ++ F
Sbjct: 908 NVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPS 967
Query: 226 VDELYHLLPLDKVESLEDL 244
+EL ++ +K + + DL
Sbjct: 968 QEELQTVIS-EKEKEITDL 985
>UNIPROTKB|O15083 [details] [associations]
symbol:ERC2 "ERC protein 2" species:9606 "Homo sapiens"
[GO:0030054 "cell junction" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005856 "cytoskeleton" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030426 "growth cone"
evidence=ISS] [GO:0042734 "presynaptic membrane" evidence=ISS]
GO:GO:0005737 GO:GO:0005856 GO:GO:0030054 GO:GO:0042734
GO:GO:0030426 eggNOG:NOG12793 EMBL:AB002376 EMBL:BC046212
EMBL:BC111550 EMBL:BC112391 IPI:IPI00472614 RefSeq:NP_056391.1
UniGene:Hs.476389 ProteinModelPortal:O15083 SMR:O15083
IntAct:O15083 STRING:O15083 PhosphoSite:O15083 PaxDb:O15083
PRIDE:O15083 Ensembl:ENST00000288221 Ensembl:ENST00000460849
GeneID:26059 KEGG:hsa:26059 UCSC:uc003dhr.1 CTD:26059
GeneCards:GC03M055542 HGNC:HGNC:31922 HPA:CAB012344
neXtProt:NX_O15083 PharmGKB:PA162385249 HOGENOM:HOG000236353
HOVERGEN:HBG051496 InParanoid:O15083 OMA:LRHMKDQ OrthoDB:EOG4FTW00
ChiTaRS:ERC2 GenomeRNAi:26059 NextBio:47950 Bgee:O15083
CleanEx:HS_ERC2 Genevestigator:O15083 GermOnline:ENSG00000187672
InterPro:IPR019323 Pfam:PF10174 Uniprot:O15083
Length = 957
Score = 124 (48.7 bits), Expect = 0.00047, P = 0.00047
Identities = 50/203 (24%), Positives = 94/203 (46%)
Query: 37 NANQK--EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIERE 94
N QK E + L+ + K+L +D++K+ +Q+ A+ E+AL + ++IER
Sbjct: 542 NVLQKKIENLQEQLRDKDKQLTNLKDRVKS-LQTDSSNTDTALATLEEALSEKERIIERL 600
Query: 95 MERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELE 154
E+ E++ + + E ++ K D KEK + L ++E ES + +
Sbjct: 601 KEQR---ERDDRERLEEIESFRKENK-DLKEKVNA-----LQAELTEKESSLIDLKEHAS 651
Query: 155 GLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILR----LLDNDELSPEQVNDVKDLLE 210
L G R +L LE +I + K KLE L+ + D+ ++PE + +K L +
Sbjct: 652 SLA-SAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAHNIEDDSRMNPEFADQIKQLDK 710
Query: 211 DYVERNQDDFEEFSDVDELYHLL 233
+ + + ++VD L +L
Sbjct: 711 EASYYRDECGKAQAEVDRLLEIL 733
>UNIPROTKB|E2QV06 [details] [associations]
symbol:CGNL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016459 "myosin complex" evidence=IEA]
[GO:0003774 "motor activity" evidence=IEA] InterPro:IPR002928
Pfam:PF01576 GO:GO:0003774 GO:GO:0016459
GeneTree:ENSGT00630000089684 CTD:84952 OMA:VLNFQRH
EMBL:AAEX03016165 EMBL:AAEX03016166 EMBL:AAEX03016167
RefSeq:XP_544699.4 Ensembl:ENSCAFT00000025797 GeneID:487574
KEGG:cfa:487574 Uniprot:E2QV06
Length = 1295
Score = 125 (49.1 bits), Expect = 0.00052, P = 0.00052
Identities = 48/200 (24%), Positives = 103/200 (51%)
Query: 11 IDRVLKKVQ-EGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69
+D+ ++K+Q E D+ + ++V + NQ ++++ ++E+ ++QR Q+K ++
Sbjct: 940 LDKTIEKLQKEMADIVEV--SRVSTLELQNQLDEYKEKNRRELAEMQR---QLKE--KTL 992
Query: 70 EIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKE-KAK 128
E + +++A L D +L+E E+ ++ + E TK ++ L Q K E +AK
Sbjct: 993 EAEKSRLTA---MKLQDEMRLMEEELRDYQRAQDEALTK---RQLLEQTLKDLEYELEAK 1046
Query: 129 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELI 188
S +D + LV ++E ++ E ELE R+T + + ++ +++ +
Sbjct: 1047 SHLKDDRSRLVKQMEDKVSQLEMELEEER-NNSDLLSERITRSREQMEQMRSELLQERAL 1105
Query: 189 LRLLDNDELSPEQVNDVKDL 208
+ L+ D++S E+ N KDL
Sbjct: 1106 KQDLECDKISLERQN--KDL 1123
>DICTYBASE|DDB_G0279375 [details] [associations]
symbol:DDB_G0279375 "OTU domain containin protein"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0279375 Pfam:PF02338 InterPro:IPR003323
PROSITE:PS50802 EMBL:AAFI02000030 eggNOG:COG5539 OMA:HCLYRAV
RefSeq:XP_641826.1 ProteinModelPortal:Q54WV5
EnsemblProtists:DDB0304420 GeneID:8622018 KEGG:ddi:DDB_G0279375
InParanoid:Q54WV5 ProtClustDB:CLSZ2846821 Uniprot:Q54WV5
Length = 340
Score = 116 (45.9 bits), Expect = 0.00078, P = 0.00078
Identities = 58/234 (24%), Positives = 105/234 (44%)
Query: 34 DTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS------SEI--KDKKVS----ASYE 81
+T+ K K K EIKKLQ+ D++ I S++ K KK+ ++
Sbjct: 58 NTEKVETKGKMVQRHKMEIKKLQQQIDKLNHAIPKKDKKAKSDLLEKTKKMEDDLKKKHQ 117
Query: 82 QALVDARKLIE--REMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLV 139
Q L KL + + +E + +++ + K SK L + K +E+ + + N V
Sbjct: 118 QELEQCEKLNKTTQSIEELNLEQQQLQQKQPSKAYLKKAQKLKQEEERMKQLEEDRKNHV 177
Query: 140 SELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSP 199
S+ +++ F A+L+ L K K PP L +IT +L++ N+E S
Sbjct: 178 SKGVIEMNDFLAKLKPLN-KTVKFIPPDGDCLYQAITN--------QLLINKDINEEESK 228
Query: 200 EQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESL--EDLVTIGPPG 251
++ + DY++ N+D+F F ++ Y D ++ E ++TIG G
Sbjct: 229 SYAKKLRTIASDYIKNNRDEFLPFIISEDEYSTAE-DPIQEYCQEQVLTIGKWG 281
>TAIR|locus:2093462 [details] [associations]
symbol:MFP1 "MAR binding filament-like protein 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003677 "DNA binding" evidence=IDA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0042646 "plastid
nucleoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0000023
"maltose metabolic process" evidence=RCA] [GO:0000272
"polysaccharide catabolic process" evidence=RCA] [GO:0005982
"starch metabolic process" evidence=RCA] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0009664 "plant-type cell wall organization" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010075
"regulation of meristem growth" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019760 "glucosinolate metabolic process"
evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 EMBL:AB012247
GO:GO:0016363 GO:GO:0009535 EMBL:BT008690 IPI:IPI00543926
RefSeq:NP_188221.2 UniGene:At.25702 ProteinModelPortal:Q9LW85
SMR:Q9LW85 STRING:Q9LW85 PaxDb:Q9LW85 PRIDE:Q9LW85
EnsemblPlants:AT3G16000.1 GeneID:820845 KEGG:ath:AT3G16000
TAIR:At3g16000 eggNOG:NOG240265 HOGENOM:HOG000237577
InParanoid:Q9LW85 OMA:ILMEREA PhylomeDB:Q9LW85
ProtClustDB:CLSN2680842 Genevestigator:Q9LW85 GermOnline:AT3G16000
GO:GO:0042646 Uniprot:Q9LW85
Length = 726
Score = 120 (47.3 bits), Expect = 0.00090, P = 0.00090
Identities = 59/243 (24%), Positives = 112/243 (46%)
Query: 1 MGASRKLQGEIDRVL---KKVQEGV-DVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ 56
+ +++ L E+ R L KK+ E + D +S+ N + + KE E L++++ ++
Sbjct: 208 LNSAKDLVTELGRELSSEKKLCEKLKDQIESLENSL--SKAGEDKEALETKLREKLDLVE 265
Query: 57 RYRDQIKTW---IQSSEIKDKKVSASYEQALVDARKL--IEREMERFKICEKETKTKAFS 111
+D+I ++ SE K ++ +AS + + ++L I + R + E + + K
Sbjct: 266 GLQDRINLLSLELKDSEEKAQRFNASLAKKEAELKELNSIYTQTSR-DLAEAKLEIKQQK 324
Query: 112 KEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHL 171
+E + Q + D K A E + LV+E ES I ++ + + K +
Sbjct: 325 EELIRTQSELDSKNSAIEELNTRITTLVAEKESYIQKLDSISKDYSALKLTSETQAAADA 384
Query: 172 ETSITRHKAHIMKL-ELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELY 230
E I+R + I +L E + R LD+ S ++V D+ + ED + D E + V L
Sbjct: 385 EL-ISRKEQEIQQLNENLDRALDDVNKSKDKVADLTEKYED--SKRMLDIE-LTTVKNLR 440
Query: 231 HLL 233
H L
Sbjct: 441 HEL 443
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.128 0.355 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 576 538 0.00094 119 3 11 23 0.37 35
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 30
No. of states in DFA: 612 (65 KB)
Total size of DFA: 271 KB (2143 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 61.07u 0.08s 61.15t Elapsed: 00:00:03
Total cpu time: 61.08u 0.08s 61.16t Elapsed: 00:00:03
Start: Tue May 21 06:15:55 2013 End: Tue May 21 06:15:58 2013