BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008136
(576 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3
PE=1 SV=1
Length = 753
Score = 239 bits (611), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 131/256 (51%), Positives = 170/256 (66%), Gaps = 18/256 (7%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVK-----KGKTRPPRLTHLETSI 175
DP +K K E WL N + L Q+D FE+E+E L+V+ K + R+ L+ I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLP 234
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L
Sbjct: 174 EKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEE---NEFLYDDLD 230
Query: 235 LDKVESLEDLVTIGPP 250
L+ + + LV PP
Sbjct: 231 LEDIP--QALVATSPP 244
>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3
PE=1 SV=1
Length = 751
Score = 238 bits (608), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 130/256 (50%), Positives = 170/256 (66%), Gaps = 18/256 (7%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ S+EIKDK+ L++ RKLIE +MERFK+ E+ETKTKA+SKEGLG K
Sbjct: 61 QIKTWVASNEIKDKR-------QLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113
Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVK-----KGKTRPPRLTHLETSI 175
DP +K K E WL N + L Q+D FE+E+E L+V+ K + R+ L+ I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHI 173
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLP 234
+H+ H+ LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L
Sbjct: 174 EKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEE---NEFLYDDLD 230
Query: 235 LDKVESLEDLVTIGPP 250
L+ + + LV PP
Sbjct: 231 LEDIP--QALVATSPP 244
>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not3 PE=1 SV=2
Length = 640
Score = 212 bits (539), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 165/489 (33%), Positives = 250/489 (51%), Gaps = 57/489 (11%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62
++RKLQ EI++ KKV +G+ +FD ++ K+ +++ +QKEK E DLK +IKKLQR RDQI
Sbjct: 2 SARKLQVEIEKTFKKVTDGIAIFDEVYEKLSASNSVSQKEKLEGDLKTQIKKLQRLRDQI 61
Query: 63 KTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTD 122
KTW S++IKDKK AL++ R+LIE +ME FK E+E K KAFSKEGL K D
Sbjct: 62 KTWASSNDIKDKK-------ALLENRRLIEAKMEEFKAVEREMKIKAFSKEGLSIASKLD 114
Query: 123 PKEKAKSETRDWLNNLVSELESQIDSFEAELEGL--TVKKGKTRPPRLTH---LETSITR 177
PKEK K +T W++N V ELE Q + EAE E L T K+GK +L+H LE+ I R
Sbjct: 115 PKEKEKQDTIQWISNAVEELERQAELIEAEAESLKATFKRGKKDLSKLSHLSELESRIER 174
Query: 178 HKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDK 237
HK H KLELI+R L+N ++SPE VND+++ + YVE +Q E+F++ + LY L LD+
Sbjct: 175 HKWHQDKLELIMRRLENSQISPEAVNDIQEDIMYYVECSQS--EDFAEDENLYDELNLDE 232
Query: 238 VESLEDLVTIG------------------PPGLVKGAPALSLKASLAASASQMP--ATVI 277
+ D G L++ K S AS + ++
Sbjct: 233 ASASYDAERSGRSSSSSHSPSPSASSSSSSENLLQDKAEAEEKVSADASVQDIAEKESLD 292
Query: 278 STHQQVTSVQEQGED------------TASQDSNSDVAARTPPAKSSGVGS-TASTPAVG 324
+ + T+ QE E+ + +++ S+V P A +S V + T T
Sbjct: 293 ADKELATNDQEDDEEENQAETQKDGAISNNENMQSEVQTTNPSASTSAVTNITKPTLIQN 352
Query: 325 PATPISIN---VPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDV 381
P+TP+S++ V + NA++T+P + + SP + +
Sbjct: 353 PSTPLSVSNSKVASPETPNATHTAPKVEMRYASAAAAAAAALAKESPSHHYIMQQVRPET 412
Query: 382 GNFPGRRSSPSLTDVRVMGRGG---LSSQPSSSIPLSSAT----AVPSNGNLGAVPLVSD 434
N P S+ + +G + +QP S+ SSAT P+ VP+ S
Sbjct: 413 PNSPRLNSTVIQSKWDSLGHTASPKMQTQPVRSVSQSSATTETNVKPTKEENADVPVSSP 472
Query: 435 VAKRNILGA 443
++++ A
Sbjct: 473 DYLKDLVNA 481
>sp|P06102|NOT3_YEAST General negative regulator of transcription subunit 3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NOT3 PE=1 SV=2
Length = 836
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 143/228 (62%), Gaps = 15/228 (6%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYD-TDNANQKEKFEADLKKEIKKLQRYRDQ 61
A RKLQ E+DRV KK+ EG+++F+S + + T+N +QK+K E+DLK+E+KKLQR R+Q
Sbjct: 2 AHRKLQQEVDRVFKKINEGLEIFNSYYERHESCTNNPSQKDKLESDLKREVKKLQRLREQ 61
Query: 62 IKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKT 121
IK+W S +IKDK +L+D R+ +E ME++K EK +K KA+S L +
Sbjct: 62 IKSWQSSPDIKDK-------DSLLDYRRSVEIAMEKYKAVEKASKEKAYSNISLKKSETL 114
Query: 122 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETS------I 175
DP+E+ + + ++L+ ++ ELE Q DS + E++ L + K + T+ E
Sbjct: 115 DPQERERRDISEYLSQMIDELERQYDSLQVEIDKLLLLNKKKKTSSTTNDEKKEQYKRFQ 174
Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE 222
R++ H ++EL LRLL N+EL P+ V +V+D + +VE NQD DF E
Sbjct: 175 ARYRWHQQQMELALRLLANEELDPQDVKNVQDDINYFVESNQDPDFVE 222
>sp|Q12514|NOT5_YEAST General negative regulator of transcription subunit 5
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NOT5 PE=1 SV=1
Length = 560
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/348 (35%), Positives = 182/348 (52%), Gaps = 61/348 (17%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTD--NANQKEKFEADLKKEIKKLQRYRD 60
+ RKLQ +ID++LKKV+EG++ FD I+ K TD N++ +EK E+DLK+EIKKLQ++RD
Sbjct: 2 SQRKLQQDIDKLLKKVKEGIEDFDDIYEKFQSTDPSNSSHREKLESDLKREIKKLQKHRD 61
Query: 61 QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
QIKTW+ ++KDK + L+ R+LIE MERFK EK KTK FSKE L P
Sbjct: 62 QIKTWLSKEDVKDK------QSVLMTNRRLIENGMERFKSVEKLMKTKQFSKEALT-NPD 114
Query: 121 T--DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH 178
DPKE K + ++++ + EL+ Q++ +EA+ E RH
Sbjct: 115 IIKDPKELKKRDQVLFIHDCLDELQKQLEQYEAQ-----------------ENEEQTERH 157
Query: 179 KAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDK 237
+ HI LE IL+ L N+E+ PE V + +D ++ YVE N D DF E+ D +Y
Sbjct: 158 EFHIANLENILKKLQNNEMDPEPVEEFQDDIKYYVENNDDPDFIEY---DTIY------- 207
Query: 238 VESLEDL-VTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQ 296
ED+ I P AP + +++ S+ +Q S +++ +
Sbjct: 208 ----EDMGCEIQPSSSNNEAPK-------EGNNQTSLSSIRSSKKQERSPKKKA---PQR 253
Query: 297 DSNSDVAARTP--PAKSSGVGSTASTPAVGPATPISINVPAQTLSNAS 342
D + A TP P S S +STP TP+S + P T+ + S
Sbjct: 254 DVSISDRATTPIAPGVESASQSISSTP-----TPVSTDTPLHTVKDDS 296
>sp|Q32MK0|MYLK3_HUMAN Myosin light chain kinase 3 OS=Homo sapiens GN=MYLK3 PE=2 SV=3
Length = 819
Score = 35.8 bits (81), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 18/148 (12%)
Query: 273 PATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISIN 332
P V+ST + +E GE++ D A R PP ++SG+G+ + V P +
Sbjct: 171 PKHVLSTSGVQSDAREPGEESQKADVLEGTAERLPPIRASGLGADPAQAVVSPGQGDGVP 230
Query: 333 VPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRS--S 390
PAQ PG + + P +P NL + ++ PGR + S
Sbjct: 231 GPAQ----------AFPGHLPLPTKVEAKAP--ETPSENLRTGL---ELAPAPGRVNVVS 275
Query: 391 PSLTDVRVMGRGGLSSQPSSSIPLSSAT 418
PSL G+G SS+P PL T
Sbjct: 276 PSLEVAPGAGQGASSSRPDPE-PLEEGT 302
>sp|Q5RDG7|MYLK3_PONAB Myosin light chain kinase 3 OS=Pongo abelii GN=MYLK3 PE=2 SV=3
Length = 819
Score = 33.1 bits (74), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 18/148 (12%)
Query: 273 PATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISIN 332
P V+S + +E GE++ D R PP ++SG+G+ + V P +
Sbjct: 171 PKHVLSASGVQSDAREPGEESQKADVLEGTVERLPPIRASGLGADPAQAVVSPGQGDGVP 230
Query: 333 VPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRS--S 390
PAQ PG + + P +P NL + ++ PGR S S
Sbjct: 231 GPAQ----------AFPGHLPLPTKGEAKAP--ETPSENLRTGL---ELAPAPGRVSVVS 275
Query: 391 PSLTDVRVMGRGGLSSQPSSSIPLSSAT 418
PSL G+G SS+P PL T
Sbjct: 276 PSLEVAPGAGQGASSSRPDPE-PLEEGT 302
>sp|O08679|MARK2_RAT Serine/threonine-protein kinase MARK2 OS=Rattus norvegicus GN=Mark2
PE=1 SV=1
Length = 722
Score = 32.7 bits (73), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 42/229 (18%)
Query: 193 DNDELSP--EQVNDVKD-------LLEDYV-ERNQDDF--EEFSDVDELYHLLPLDKVES 240
++DEL P E + D KD + Y E QD + +++V Y LL E
Sbjct: 309 EDDELKPYVEPLPDYKDPRRTELMVSMGYTREEIQDSLVGQRYNEVMATYLLLGYKSSEL 368
Query: 241 LEDLVTIGPPGLV----KGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQ 296
D +T+ P AP+ S K + SA+ P S+ Q V ++ ++ S+
Sbjct: 369 EGDTITLKPRPSADLTNSSAPSPSHKVQRSVSAN--PKQRRSSDQAVPAIPTS--NSYSK 424
Query: 297 DSNSDVAARTPPAKSSGVGSTASTPAVGPATPI------------SINVPAQTLSNASNT 344
+ S+ A P + +G AS+ A PA+P+ S N T +N S
Sbjct: 425 KTQSNNAENKRPEEETG--RKASSTAKVPASPLPGLDRKKTTPTPSTNSVLSTSTNRSRN 482
Query: 345 SPVLP----GSSSVRGVFDNTGP----ISSSPPVNLTSSTKEEDVGNFP 385
SP+L G +S++ D+T P ++S N++SS+ D NFP
Sbjct: 483 SPLLDRASLGQASIQNGKDSTAPQRVPVASPSAHNISSSSGAPDRTNFP 531
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.127 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,726,268
Number of Sequences: 539616
Number of extensions: 9368424
Number of successful extensions: 40302
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 891
Number of HSP's that attempted gapping in prelim test: 37422
Number of HSP's gapped (non-prelim): 2655
length of query: 576
length of database: 191,569,459
effective HSP length: 123
effective length of query: 453
effective length of database: 125,196,691
effective search space: 56714101023
effective search space used: 56714101023
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)