Query 008136
Match_columns 576
No_of_seqs 123 out of 191
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 19:55:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04065 Not3: Not1 N-terminal 100.0 2E-91 4.3E-96 682.4 24.8 227 2-238 1-233 (233)
2 KOG2150 CCR4-NOT transcription 100.0 1.3E-86 2.9E-91 704.9 31.9 221 2-249 1-222 (575)
3 COG5665 NOT5 CCR4-NOT transcri 100.0 5.2E-67 1.1E-71 537.0 23.6 198 12-237 1-199 (548)
4 cd07674 F-BAR_FCHO1 The F-BAR 95.8 0.33 7.2E-06 48.7 15.1 174 24-220 57-251 (261)
5 PHA02562 46 endonuclease subun 95.7 0.83 1.8E-05 49.2 18.7 138 5-156 177-325 (562)
6 PF08317 Spc7: Spc7 kinetochor 95.2 3.3 7.1E-05 43.1 20.2 46 166-213 244-289 (325)
7 cd07673 F-BAR_FCHO2 The F-BAR 93.7 2.1 4.4E-05 43.7 14.5 172 24-219 64-257 (269)
8 PF12128 DUF3584: Protein of u 93.6 1.3 2.9E-05 53.3 15.0 131 38-192 731-874 (1201)
9 TIGR03185 DNA_S_dndD DNA sulfu 92.8 4.6 9.9E-05 45.5 16.7 32 38-69 261-292 (650)
10 PF00038 Filament: Intermediat 92.6 3.6 7.8E-05 41.5 14.2 100 48-157 129-236 (312)
11 PF03357 Snf7: Snf7; InterPro 92.2 0.58 1.3E-05 42.5 7.4 87 131-218 2-122 (171)
12 KOG0963 Transcription factor/C 91.6 2.8 6.1E-05 47.9 13.3 31 7-37 71-101 (629)
13 KOG0996 Structural maintenance 91.4 6.3 0.00014 48.1 16.3 146 38-198 819-967 (1293)
14 PRK04863 mukB cell division pr 91.3 20 0.00043 45.1 20.9 49 167-215 405-453 (1486)
15 cd00632 Prefoldin_beta Prefold 91.1 3.4 7.4E-05 36.3 10.7 81 50-155 3-88 (105)
16 KOG4438 Centromere-associated 90.9 19 0.0004 40.1 18.1 163 14-197 174-361 (446)
17 TIGR02169 SMC_prok_A chromosom 90.6 9.6 0.00021 44.2 16.6 17 45-61 193-209 (1164)
18 KOG0996 Structural maintenance 90.4 7.6 0.00016 47.5 15.8 163 6-197 444-615 (1293)
19 KOG2911 Uncharacterized conser 90.4 0.63 1.4E-05 51.0 6.6 110 102-215 209-352 (439)
20 cd07648 F-BAR_FCHO The F-BAR ( 90.4 4.9 0.00011 40.1 12.4 76 135-218 166-249 (261)
21 cd07675 F-BAR_FNBP1L The F-BAR 89.8 20 0.00043 37.0 16.4 170 9-214 5-231 (252)
22 PF08317 Spc7: Spc7 kinetochor 89.8 23 0.0005 37.0 17.2 103 12-157 162-264 (325)
23 PRK04778 septation ring format 89.8 20 0.00043 40.2 17.7 35 180-214 452-490 (569)
24 COG1196 Smc Chromosome segrega 89.4 4.1 8.9E-05 49.0 12.9 10 59-68 813-822 (1163)
25 PF07139 DUF1387: Protein of u 88.9 8.7 0.00019 40.8 13.4 111 41-216 148-259 (302)
26 PF10168 Nup88: Nuclear pore c 88.9 10 0.00022 44.2 15.1 152 14-185 537-704 (717)
27 PRK03918 chromosome segregatio 88.7 24 0.00053 40.4 17.9 32 126-157 448-479 (880)
28 cd07653 F-BAR_CIP4-like The F- 88.7 20 0.00044 35.2 15.1 37 178-216 196-232 (251)
29 TIGR02338 gimC_beta prefoldin, 87.9 10 0.00022 33.8 11.3 82 47-153 4-90 (110)
30 PHA00425 DNA packaging protein 87.8 1.5 3.2E-05 38.9 5.9 68 142-219 6-77 (88)
31 KOG0250 DNA repair protein RAD 87.8 8.4 0.00018 46.7 13.7 62 124-185 395-462 (1074)
32 KOG4674 Uncharacterized conser 87.7 3.7 8E-05 51.9 11.1 103 1-110 1277-1393(1822)
33 PTZ00464 SNF-7-like protein; P 87.3 2.6 5.7E-05 42.2 8.1 90 129-218 17-142 (211)
34 cd07655 F-BAR_PACSIN The F-BAR 87.1 12 0.00026 37.9 12.6 33 181-215 205-237 (258)
35 COG1196 Smc Chromosome segrega 87.0 15 0.00032 44.5 15.3 27 168-194 872-898 (1163)
36 KOG0995 Centromere-associated 86.7 5.7 0.00012 45.2 11.1 64 83-148 263-326 (581)
37 PRK02224 chromosome segregatio 86.7 8.6 0.00019 44.2 12.8 16 135-150 625-640 (880)
38 cd00176 SPEC Spectrin repeats, 86.3 8.6 0.00019 34.4 10.1 24 132-155 74-97 (213)
39 PRK11637 AmiB activator; Provi 86.0 35 0.00077 36.6 16.1 14 83-96 118-131 (428)
40 smart00503 SynN Syntaxin N-ter 85.9 18 0.00039 31.0 11.5 102 7-108 9-115 (117)
41 PRK02224 chromosome segregatio 85.8 55 0.0012 37.9 18.6 26 168-193 421-446 (880)
42 PRK01156 chromosome segregatio 85.7 55 0.0012 38.1 18.6 46 112-157 451-496 (895)
43 PF09789 DUF2353: Uncharacteri 85.6 35 0.00076 36.6 15.7 21 136-156 132-152 (319)
44 PF09745 DUF2040: Coiled-coil 85.5 4.8 0.0001 37.6 8.3 97 7-109 3-124 (127)
45 KOG0250 DNA repair protein RAD 85.3 21 0.00045 43.5 15.2 89 22-113 213-312 (1074)
46 COG4942 Membrane-bound metallo 85.2 26 0.00057 38.8 14.8 129 6-157 42-174 (420)
47 PF12729 4HB_MCP_1: Four helix 85.0 22 0.00047 30.9 11.7 108 34-153 70-177 (181)
48 KOG1899 LAR transmembrane tyro 84.5 45 0.00097 39.2 16.6 97 125-222 194-298 (861)
49 KOG2150 CCR4-NOT transcription 83.9 4.5 9.8E-05 46.0 8.7 74 2-77 146-219 (575)
50 PRK09343 prefoldin subunit bet 83.9 22 0.00048 32.5 11.7 44 44-106 5-48 (121)
51 KOG0161 Myosin class II heavy 83.8 16 0.00034 47.0 14.0 47 3-49 1323-1371(1930)
52 PF03962 Mnd1: Mnd1 family; I 83.7 10 0.00023 37.1 10.1 84 127-215 66-150 (188)
53 COG0419 SbcC ATPase involved i 83.6 45 0.00098 39.3 16.9 26 130-155 647-672 (908)
54 TIGR00606 rad50 rad50. This fa 83.2 89 0.0019 38.6 19.7 46 167-212 935-982 (1311)
55 PRK03918 chromosome segregatio 83.1 43 0.00092 38.5 16.1 12 21-32 156-167 (880)
56 KOG0933 Structural maintenance 82.7 91 0.002 38.4 18.7 53 166-218 441-504 (1174)
57 KOG0161 Myosin class II heavy 82.6 32 0.00069 44.5 15.9 22 135-156 1060-1081(1930)
58 PRK09039 hypothetical protein; 82.5 45 0.00097 35.5 14.9 26 131-156 138-163 (343)
59 PF14662 CCDC155: Coiled-coil 82.3 58 0.0013 32.9 14.7 41 3-56 16-56 (193)
60 PTZ00446 vacuolar sorting prot 82.2 7.3 0.00016 38.8 8.5 25 194-218 124-148 (191)
61 TIGR02168 SMC_prok_B chromosom 82.1 88 0.0019 36.4 18.1 17 169-185 436-452 (1179)
62 cd07647 F-BAR_PSTPIP The F-BAR 82.1 57 0.0012 32.5 15.4 33 181-215 190-222 (239)
63 COG3096 MukB Uncharacterized p 82.0 5 0.00011 47.4 8.2 138 51-213 807-947 (1480)
64 PF13166 AAA_13: AAA domain 82.0 57 0.0012 36.7 16.3 27 130-156 370-396 (712)
65 PF01544 CorA: CorA-like Mg2+ 81.9 8 0.00017 37.5 8.6 82 131-215 119-207 (292)
66 PF07106 TBPIP: Tat binding pr 81.5 8.6 0.00019 36.2 8.4 76 139-214 81-159 (169)
67 PRK05771 V-type ATP synthase s 81.2 35 0.00077 38.6 14.5 24 45-68 109-132 (646)
68 KOG3771 Amphiphysin [Intracell 80.8 1E+02 0.0023 34.7 21.5 29 5-33 4-40 (460)
69 PF11123 DNA_Packaging_2: DNA 80.5 5.5 0.00012 35.1 6.1 66 143-218 5-74 (82)
70 KOG1029 Endocytic adaptor prot 80.3 19 0.00042 42.9 12.0 60 101-160 512-572 (1118)
71 COG1293 Predicted RNA-binding 79.6 11 0.00024 42.5 9.9 80 24-104 266-346 (564)
72 cd00890 Prefoldin Prefoldin is 79.3 19 0.00042 31.5 9.4 32 125-156 82-113 (129)
73 PLN03229 acetyl-coenzyme A car 79.2 1.5E+02 0.0032 35.5 19.6 10 54-63 536-545 (762)
74 PF05833 FbpA: Fibronectin-bin 79.1 0.75 1.6E-05 48.7 0.6 41 168-209 396-436 (455)
75 PRK01156 chromosome segregatio 78.8 94 0.002 36.3 17.1 24 175-198 728-751 (895)
76 COG1579 Zn-ribbon protein, pos 78.5 75 0.0016 32.9 14.5 22 135-156 94-115 (239)
77 PF03938 OmpH: Outer membrane 78.2 25 0.00054 32.1 10.1 62 6-67 40-104 (158)
78 PF07888 CALCOCO1: Calcium bin 78.1 41 0.0009 38.5 13.6 63 6-70 140-202 (546)
79 PF11932 DUF3450: Protein of u 78.0 36 0.00078 34.1 11.9 78 133-213 66-159 (251)
80 PF12128 DUF3584: Protein of u 77.8 1.7E+02 0.0038 36.0 19.5 41 178-218 748-795 (1201)
81 PF04156 IncA: IncA protein; 77.7 65 0.0014 30.5 15.7 21 82-102 130-150 (191)
82 PTZ00464 SNF-7-like protein; P 77.5 84 0.0018 31.7 16.3 28 167-194 122-149 (211)
83 PF10174 Cast: RIM-binding pro 77.5 65 0.0014 38.3 15.4 44 165-208 547-598 (775)
84 PF07888 CALCOCO1: Calcium bin 77.4 1.4E+02 0.0031 34.3 17.9 17 187-203 322-338 (546)
85 PF03999 MAP65_ASE1: Microtubu 77.3 9.6 0.00021 43.1 8.5 127 4-153 266-411 (619)
86 PHA02562 46 endonuclease subun 76.6 1.1E+02 0.0023 33.4 15.8 23 136-158 350-372 (562)
87 cd07672 F-BAR_PSTPIP2 The F-BA 76.3 82 0.0018 32.0 14.0 18 196-213 204-221 (240)
88 PRK03947 prefoldin subunit alp 76.2 20 0.00043 32.7 8.8 32 125-156 89-120 (140)
89 TIGR00606 rad50 rad50. This fa 76.1 60 0.0013 40.0 15.2 46 41-95 607-652 (1311)
90 KOG0240 Kinesin (SMY1 subfamil 75.9 30 0.00064 39.9 11.7 27 47-73 356-382 (607)
91 PF04799 Fzo_mitofusin: fzo-li 75.8 9 0.0002 37.8 6.8 63 6-100 102-165 (171)
92 PF06160 EzrA: Septation ring 75.7 1.5E+02 0.0032 33.6 17.7 129 47-203 249-378 (560)
93 KOG2117 Uncharacterized conser 75.2 11 0.00024 41.1 7.8 106 1-110 44-177 (379)
94 TIGR02680 conserved hypothetic 74.5 88 0.0019 39.0 16.1 71 14-104 221-291 (1353)
95 KOG0810 SNARE protein Syntaxin 74.5 1.2E+02 0.0027 32.1 16.6 96 10-105 44-146 (297)
96 PTZ00108 DNA topoisomerase 2-l 74.3 2.6E+02 0.0056 35.7 20.2 108 41-156 997-1121(1388)
97 PRK04863 mukB cell division pr 74.1 1.7E+02 0.0036 37.4 18.4 20 174-193 504-523 (1486)
98 PRK04778 septation ring format 74.1 1.6E+02 0.0035 33.2 19.6 59 47-115 253-312 (569)
99 PF06008 Laminin_I: Laminin Do 73.9 74 0.0016 32.0 13.0 185 6-215 56-245 (264)
100 PF08429 PLU-1: PLU-1-like pro 73.3 84 0.0018 32.3 13.4 147 10-210 104-260 (335)
101 cd00179 SynN Syntaxin N-termin 73.2 47 0.001 30.0 10.3 101 7-108 7-114 (151)
102 PF14735 HAUS4: HAUS augmin-li 73.1 66 0.0014 33.1 12.5 91 5-99 39-130 (238)
103 PF15619 Lebercilin: Ciliary p 72.7 60 0.0013 32.3 11.7 96 9-115 57-160 (194)
104 PF06798 PrkA: PrkA serine pro 72.6 1.2E+02 0.0026 31.3 14.3 45 166-212 191-237 (254)
105 KOG0976 Rho/Rac1-interacting s 71.8 38 0.00083 40.7 11.5 115 38-160 286-409 (1265)
106 smart00787 Spc7 Spc7 kinetocho 71.8 1.4E+02 0.0031 31.7 18.5 43 168-212 241-283 (312)
107 TIGR03185 DNA_S_dndD DNA sulfu 71.7 68 0.0015 36.4 13.4 43 7-49 389-431 (650)
108 cd07653 F-BAR_CIP4-like The F- 71.6 49 0.0011 32.6 10.9 31 5-35 115-145 (251)
109 COG1579 Zn-ribbon protein, pos 71.5 97 0.0021 32.1 13.2 22 41-62 61-82 (239)
110 KOG4673 Transcription factor T 71.1 56 0.0012 38.8 12.5 112 34-163 397-515 (961)
111 PF06730 FAM92: FAM92 protein; 71.1 81 0.0018 32.4 12.5 85 8-98 85-172 (219)
112 PF07926 TPR_MLP1_2: TPR/MLP1/ 70.7 87 0.0019 28.8 13.8 121 5-156 6-131 (132)
113 PF01496 V_ATPase_I: V-type AT 70.6 19 0.00041 41.5 8.9 54 14-69 75-129 (759)
114 PRK09039 hypothetical protein; 70.5 81 0.0017 33.6 12.9 62 138-209 138-199 (343)
115 KOG0612 Rho-associated, coiled 70.2 1.1E+02 0.0025 38.2 15.2 37 121-157 695-734 (1317)
116 PF12729 4HB_MCP_1: Four helix 70.0 74 0.0016 27.6 13.5 59 11-70 77-136 (181)
117 KOG0994 Extracellular matrix g 69.9 2E+02 0.0044 36.4 17.0 19 125-143 1692-1710(1758)
118 PRK11637 AmiB activator; Provi 69.1 1.4E+02 0.003 32.2 14.4 25 80-104 108-132 (428)
119 PRK05287 hypothetical protein; 68.8 27 0.00058 36.2 8.7 125 46-199 57-183 (250)
120 PF13851 GAS: Growth-arrest sp 68.5 1.3E+02 0.0028 29.9 14.1 26 191-216 169-194 (201)
121 TIGR01843 type_I_hlyD type I s 68.2 42 0.0009 34.6 10.0 10 108-117 185-194 (423)
122 KOG0994 Extracellular matrix g 68.2 77 0.0017 39.7 13.2 61 7-69 1427-1487(1758)
123 cd07598 BAR_FAM92 The Bin/Amph 68.1 1.1E+02 0.0023 30.8 12.4 83 5-99 21-107 (211)
124 PF07889 DUF1664: Protein of u 68.0 20 0.00044 33.7 7.0 70 131-211 37-107 (126)
125 smart00502 BBC B-Box C-termina 67.8 76 0.0016 26.9 11.2 32 125-156 38-69 (127)
126 PF15070 GOLGA2L5: Putative go 67.4 83 0.0018 36.4 13.0 37 164-200 120-156 (617)
127 COG0419 SbcC ATPase involved i 66.6 2.6E+02 0.0055 33.3 17.0 54 6-61 386-442 (908)
128 cd07671 F-BAR_PSTPIP1 The F-BA 66.6 1.4E+02 0.0029 30.5 13.0 26 38-63 73-98 (242)
129 KOG2129 Uncharacterized conser 66.3 1.5E+02 0.0032 33.7 14.0 21 13-33 104-127 (552)
130 PF13514 AAA_27: AAA domain 65.4 2.1E+02 0.0046 34.7 16.4 33 5-37 133-171 (1111)
131 smart00806 AIP3 Actin interact 64.6 1.7E+02 0.0037 32.8 14.2 60 3-62 211-276 (426)
132 cd07671 F-BAR_PSTPIP1 The F-BA 63.5 84 0.0018 32.0 10.9 79 5-98 109-197 (242)
133 PF09726 Macoilin: Transmembra 63.4 44 0.00096 39.1 10.0 23 73-95 486-511 (697)
134 KOG0982 Centrosomal protein Nu 63.1 1.5E+02 0.0032 33.6 13.3 21 125-149 366-386 (502)
135 cd07619 BAR_Rich2 The Bin/Amph 63.0 1.1E+02 0.0024 31.8 11.8 16 12-27 87-102 (248)
136 TIGR00293 prefoldin, archaeal 62.8 28 0.0006 31.1 6.7 32 125-156 81-112 (126)
137 cd07648 F-BAR_FCHO The F-BAR ( 62.1 1.5E+02 0.0033 29.7 12.4 47 182-233 181-227 (261)
138 PF15272 BBP1_C: Spindle pole 61.9 47 0.001 33.6 8.6 44 13-60 19-65 (196)
139 PF03148 Tektin: Tektin family 61.5 2.4E+02 0.0052 30.5 19.9 171 5-194 56-279 (384)
140 cd07680 F-BAR_PACSIN1 The F-BA 61.1 1.4E+02 0.0031 31.0 12.2 174 4-212 39-234 (258)
141 PF09787 Golgin_A5: Golgin sub 61.1 2.8E+02 0.006 31.1 19.3 71 130-214 281-351 (511)
142 KOG0977 Nuclear envelope prote 61.1 38 0.00083 38.7 8.7 53 101-153 231-291 (546)
143 PF04136 Sec34: Sec34-like fam 60.8 43 0.00093 32.0 7.9 68 131-198 15-91 (157)
144 PF07083 DUF1351: Protein of u 60.4 1.9E+02 0.0041 28.9 14.6 72 35-108 38-111 (215)
145 KOG0962 DNA repair protein RAD 60.2 2.9E+02 0.0064 35.0 16.3 62 5-68 888-949 (1294)
146 PF10267 Tmemb_cc2: Predicted 60.1 2E+02 0.0043 31.9 13.7 21 166-186 298-318 (395)
147 KOG4364 Chromatin assembly fac 59.8 37 0.00081 39.9 8.4 22 38-59 291-312 (811)
148 PF07798 DUF1640: Protein of u 59.3 81 0.0018 30.3 9.5 21 47-67 84-105 (177)
149 KOG1029 Endocytic adaptor prot 58.5 4.3E+02 0.0092 32.4 17.9 29 166-194 472-500 (1118)
150 PF05667 DUF812: Protein of un 58.2 61 0.0013 37.3 9.8 81 127-208 325-405 (594)
151 KOG4460 Nuclear pore complex, 58.2 3.7E+02 0.0081 31.7 17.2 41 13-61 559-599 (741)
152 PRK09793 methyl-accepting prot 57.9 1.2E+02 0.0026 33.4 11.6 65 9-73 81-146 (533)
153 KOG4286 Dystrophin-like protei 57.9 2.5E+02 0.0054 34.1 14.5 167 12-193 54-254 (966)
154 PRK00286 xseA exodeoxyribonucl 57.6 2.8E+02 0.006 30.0 15.3 41 15-63 259-299 (438)
155 cd07673 F-BAR_FCHO2 The F-BAR 57.4 66 0.0014 33.0 9.1 81 7-92 155-239 (269)
156 PF11166 DUF2951: Protein of u 57.3 32 0.0007 31.5 6.0 57 9-68 21-78 (98)
157 PF15188 CCDC-167: Coiled-coil 57.1 50 0.0011 29.4 7.1 43 7-49 3-46 (85)
158 PRK10361 DNA recombination pro 57.1 2.7E+02 0.0058 31.7 14.2 28 132-159 135-162 (475)
159 PF03114 BAR: BAR domain; Int 56.9 85 0.0018 29.0 9.0 86 9-101 131-217 (229)
160 PF14523 Syntaxin_2: Syntaxin- 56.9 21 0.00045 30.4 4.7 58 6-63 37-95 (102)
161 PRK13182 racA polar chromosome 56.8 33 0.00072 33.6 6.5 51 54-107 93-143 (175)
162 KOG2273 Membrane coat complex 56.6 2.2E+02 0.0048 31.2 13.4 18 200-217 464-481 (503)
163 PF04740 LXG: LXG domain of WX 56.4 1.9E+02 0.004 27.6 15.1 39 38-76 9-48 (204)
164 PF09726 Macoilin: Transmembra 56.4 1.7E+02 0.0038 34.4 13.1 50 41-98 420-476 (697)
165 PF06160 EzrA: Septation ring 56.3 3.5E+02 0.0075 30.7 15.9 26 47-72 165-190 (560)
166 PF05791 Bacillus_HBL: Bacillu 56.2 1.3E+02 0.0029 29.2 10.5 74 13-101 77-150 (184)
167 PF14362 DUF4407: Domain of un 56.1 1.9E+02 0.0041 29.6 12.1 34 121-154 180-213 (301)
168 PF06657 Cep57_MT_bd: Centroso 56.0 26 0.00057 30.2 5.1 55 10-64 14-75 (79)
169 PF05483 SCP-1: Synaptonemal c 55.9 1.2E+02 0.0026 36.0 11.6 129 54-185 556-719 (786)
170 PTZ00473 Plasmodium Vir superf 55.8 18 0.00039 40.0 5.0 125 20-182 75-215 (420)
171 KOG4302 Microtubule-associated 55.6 4.2E+02 0.009 31.4 22.5 210 5-220 170-448 (660)
172 KOG0804 Cytoplasmic Zn-finger 55.6 67 0.0015 36.3 9.3 35 80-115 326-360 (493)
173 PF00435 Spectrin: Spectrin re 55.5 1E+02 0.0023 24.5 8.9 51 52-109 3-54 (105)
174 PF13949 ALIX_LYPXL_bnd: ALIX 55.1 2.3E+02 0.005 28.4 14.8 79 20-102 22-104 (296)
175 PF05597 Phasin: Poly(hydroxya 55.0 1.9E+02 0.0042 27.4 11.8 24 137-160 109-132 (132)
176 KOG0804 Cytoplasmic Zn-finger 53.9 55 0.0012 36.9 8.3 30 17-46 329-358 (493)
177 PF04286 DUF445: Protein of un 53.5 2.5E+02 0.0055 28.3 15.0 31 170-204 302-332 (367)
178 PF05082 Rop-like: Rop-like; 53.4 15 0.00032 31.4 3.1 20 46-65 5-24 (66)
179 PF07851 TMPIT: TMPIT-like pro 53.4 1.2E+02 0.0027 32.8 10.6 54 46-106 39-92 (330)
180 PLN03229 acetyl-coenzyme A car 53.3 4.3E+02 0.0093 31.9 15.5 88 142-236 576-681 (762)
181 PF11500 Cut12: Spindle pole b 53.1 45 0.00098 32.5 6.7 27 42-68 76-102 (152)
182 PF13863 DUF4200: Domain of un 53.1 1.3E+02 0.0028 26.7 9.1 23 83-105 15-37 (126)
183 cd00176 SPEC Spectrin repeats, 52.6 1.1E+02 0.0024 27.4 8.8 19 139-157 155-173 (213)
184 COG2882 FliJ Flagellar biosynt 52.1 2.3E+02 0.0051 27.5 11.6 124 41-198 14-138 (148)
185 TIGR02132 phaR_Bmeg polyhydrox 51.8 2.5E+02 0.0055 28.5 11.7 110 80-215 44-157 (189)
186 PF10211 Ax_dynein_light: Axon 51.1 2.5E+02 0.0055 27.6 12.7 10 7-16 38-47 (189)
187 KOG4643 Uncharacterized coiled 51.0 1.4E+02 0.0031 36.8 11.5 74 13-98 383-462 (1195)
188 TIGR01843 type_I_hlyD type I s 50.5 3.1E+02 0.0066 28.4 15.6 27 39-65 81-107 (423)
189 PF14282 FlxA: FlxA-like prote 50.5 27 0.00057 31.4 4.4 56 136-191 18-76 (106)
190 cd07676 F-BAR_FBP17 The F-BAR 50.1 3E+02 0.0066 28.2 15.8 157 23-215 67-233 (253)
191 PTZ00009 heat shock 70 kDa pro 50.0 90 0.0019 35.7 9.5 55 41-98 552-612 (653)
192 KOG0979 Structural maintenance 49.3 5.7E+02 0.012 32.0 15.9 53 82-143 248-300 (1072)
193 PF00509 Hemagglutinin: Haemag 49.0 3.5 7.7E-05 46.6 -1.6 81 130-218 375-459 (550)
194 PRK10780 periplasmic chaperone 48.8 2.3E+02 0.0049 26.9 10.6 90 6-111 43-139 (165)
195 PF13863 DUF4200: Domain of un 48.6 83 0.0018 27.9 7.2 37 55-99 16-52 (126)
196 KOG0612 Rho-associated, coiled 48.3 1.4E+02 0.003 37.6 10.9 24 133-156 619-642 (1317)
197 PF09325 Vps5: Vps5 C terminal 48.2 2.6E+02 0.0056 26.9 14.5 22 11-32 80-101 (236)
198 KOG0964 Structural maintenance 48.2 4.6E+02 0.01 32.8 14.9 85 126-210 428-520 (1200)
199 PF07464 ApoLp-III: Apolipopho 48.1 1.4E+02 0.0031 28.9 9.2 111 16-155 3-117 (155)
200 TIGR02449 conserved hypothetic 48.0 1.8E+02 0.0038 24.9 8.8 40 58-105 26-65 (65)
201 KOG1832 HIV-1 Vpr-binding prot 47.9 60 0.0013 39.8 7.8 59 369-427 952-1013(1516)
202 cd07594 BAR_Endophilin_B The B 47.9 1.7E+02 0.0036 30.0 10.1 90 9-105 133-222 (229)
203 TIGR00634 recN DNA repair prot 47.5 4.6E+02 0.0099 29.5 14.9 47 18-64 156-203 (563)
204 PF06810 Phage_GP20: Phage min 47.2 76 0.0017 30.4 7.2 54 11-69 4-67 (155)
205 cd07593 BAR_MUG137_fungi The B 47.0 1.7E+02 0.0037 29.6 9.9 88 9-105 114-201 (215)
206 COG1283 NptA Na+/phosphate sym 46.7 5.2E+02 0.011 29.9 16.9 27 172-198 442-468 (533)
207 cd07600 BAR_Gvp36 The Bin/Amph 46.6 1.6E+02 0.0034 30.4 9.7 89 9-105 147-235 (242)
208 PF04740 LXG: LXG domain of WX 46.4 1.9E+02 0.0041 27.6 9.7 64 41-104 97-167 (204)
209 PF02185 HR1: Hr1 repeat; Int 46.2 84 0.0018 25.8 6.4 59 6-69 5-63 (70)
210 cd00238 ERp29c ERp29 and ERp38 46.0 72 0.0016 28.2 6.4 39 170-208 47-86 (93)
211 PF00804 Syntaxin: Syntaxin; 46.0 1.7E+02 0.0037 24.1 11.0 59 9-68 10-71 (103)
212 TIGR00255 conserved hypothetic 45.6 2.3E+02 0.0051 29.9 11.0 111 42-186 153-291 (291)
213 PF03962 Mnd1: Mnd1 family; I 45.3 2.1E+02 0.0045 28.2 10.0 44 135-182 108-151 (188)
214 PF09325 Vps5: Vps5 C terminal 45.3 2.9E+02 0.0063 26.6 13.9 52 165-216 162-219 (236)
215 COG0598 CorA Mg2+ and Co2+ tra 45.2 84 0.0018 32.6 7.7 64 130-196 147-210 (322)
216 PF09755 DUF2046: Uncharacteri 45.0 2.7E+02 0.0059 30.1 11.5 51 168-218 122-177 (310)
217 PF07072 DUF1342: Protein of u 44.8 38 0.00082 34.1 5.0 45 46-98 39-84 (211)
218 cd07675 F-BAR_FNBP1L The F-BAR 44.7 1.7E+02 0.0037 30.4 9.7 33 3-35 114-146 (252)
219 PF02609 Exonuc_VII_S: Exonucl 44.5 41 0.00088 26.6 4.2 36 180-215 3-39 (53)
220 PF05008 V-SNARE: Vesicle tran 44.1 1.6E+02 0.0035 24.2 7.8 57 127-190 22-78 (79)
221 cd07665 BAR_SNX1 The Bin/Amphi 44.1 2.3E+02 0.005 29.1 10.4 71 54-153 160-230 (234)
222 PF09789 DUF2353: Uncharacteri 43.9 4.6E+02 0.0099 28.5 13.5 135 48-213 14-167 (319)
223 cd07655 F-BAR_PACSIN The F-BAR 43.8 1.8E+02 0.0039 29.5 9.6 29 6-34 123-151 (258)
224 PF06013 WXG100: Proteins of 1 43.8 1.6E+02 0.0034 23.1 8.8 72 120-193 3-75 (86)
225 smart00126 IL6 Interleukin-6 h 43.8 51 0.0011 32.1 5.5 53 12-66 53-106 (154)
226 cd07658 F-BAR_NOSTRIN The F-BA 43.7 3.6E+02 0.0078 27.2 13.3 36 17-52 52-89 (239)
227 PF10168 Nup88: Nuclear pore c 43.1 6.4E+02 0.014 30.0 16.8 24 132-156 635-658 (717)
228 PF10186 Atg14: UV radiation r 42.8 3.4E+02 0.0075 26.8 13.7 18 6-23 31-48 (302)
229 KOG2991 Splicing regulator [RN 42.6 3.8E+02 0.0082 28.9 11.8 97 41-156 179-276 (330)
230 PF10136 SpecificRecomb: Site- 42.2 6.5E+02 0.014 29.8 15.8 67 125-193 187-264 (643)
231 cd07676 F-BAR_FBP17 The F-BAR 42.1 2.3E+02 0.0051 29.0 10.2 34 4-37 116-149 (253)
232 PF10174 Cast: RIM-binding pro 42.0 7E+02 0.015 30.1 19.7 67 125-191 460-539 (775)
233 PF11559 ADIP: Afadin- and alp 42.0 2.9E+02 0.0062 25.6 10.0 83 5-100 62-147 (151)
234 COG0216 PrfA Protein chain rel 41.6 2.6E+02 0.0057 30.8 10.8 98 14-156 5-102 (363)
235 PF05008 V-SNARE: Vesicle tran 41.6 1.9E+02 0.0042 23.7 7.9 51 13-63 25-78 (79)
236 cd01111 HTH_MerD Helix-Turn-He 41.4 70 0.0015 28.5 5.7 29 38-66 79-107 (107)
237 PF09731 Mitofilin: Mitochondr 41.4 5.5E+02 0.012 28.7 18.8 12 186-197 415-426 (582)
238 KOG2685 Cystoskeletal protein 41.3 5.7E+02 0.012 28.9 16.5 79 9-95 87-187 (421)
239 cd07681 F-BAR_PACSIN3 The F-BA 41.2 4.4E+02 0.0096 27.6 14.4 41 11-57 7-47 (258)
240 PRK15041 methyl-accepting chem 41.2 2.6E+02 0.0057 31.0 11.2 62 10-71 86-148 (554)
241 PF05974 DUF892: Domain of unk 41.0 1.5E+02 0.0032 28.1 8.1 75 131-215 6-86 (159)
242 COG5185 HEC1 Protein involved 40.9 6E+02 0.013 29.6 13.6 95 42-147 263-361 (622)
243 KOG0247 Kinesin-like protein [ 40.5 6.3E+02 0.014 30.7 14.2 35 83-117 542-576 (809)
244 KOG0239 Kinesin (KAR3 subfamil 39.9 1.9E+02 0.0042 33.9 10.2 68 37-108 208-281 (670)
245 PF08376 NIT: Nitrate and nitr 39.9 2E+02 0.0044 27.2 8.9 82 16-105 157-239 (247)
246 PF01920 Prefoldin_2: Prefoldi 39.6 90 0.002 26.4 5.9 86 51-156 3-88 (106)
247 KOG0964 Structural maintenance 39.6 2.3E+02 0.005 35.2 10.8 149 41-216 673-825 (1200)
248 PF00489 IL6: Interleukin-6/G- 39.5 1.3E+02 0.0028 28.7 7.4 53 11-65 52-105 (154)
249 PF15397 DUF4618: Domain of un 39.5 4.9E+02 0.011 27.5 13.3 26 131-156 194-219 (258)
250 PF14282 FlxA: FlxA-like prote 39.4 1.4E+02 0.0031 26.8 7.3 25 129-153 50-74 (106)
251 PF10473 CENP-F_leu_zip: Leuci 39.4 98 0.0021 29.7 6.6 82 101-188 29-116 (140)
252 PF04943 Pox_F11: Poxvirus F11 39.2 1.4E+02 0.0031 32.8 8.5 93 6-101 219-316 (366)
253 PF05565 Sipho_Gp157: Siphovir 39.1 2.7E+02 0.0059 26.6 9.5 17 83-99 65-81 (162)
254 PRK03598 putative efflux pump 38.8 4.5E+02 0.0098 27.0 13.1 43 141-186 156-198 (331)
255 KOG0933 Structural maintenance 38.8 9.1E+02 0.02 30.5 18.6 60 47-106 712-779 (1174)
256 PRK04654 sec-independent trans 38.8 4.7E+02 0.01 27.1 15.3 52 130-190 27-78 (214)
257 PF03980 Nnf1: Nnf1 ; InterPr 38.7 2.8E+02 0.006 24.5 12.5 87 42-156 13-99 (109)
258 PF07061 Swi5: Swi5; InterPro 38.6 79 0.0017 27.7 5.4 78 134-238 4-82 (83)
259 PRK10361 DNA recombination pro 38.6 50 0.0011 37.2 5.2 52 8-64 135-186 (475)
260 KOG3565 Cdc42-interacting prot 38.6 6.1E+02 0.013 29.9 13.8 48 4-57 9-56 (640)
261 cd00584 Prefoldin_alpha Prefol 38.3 1.4E+02 0.003 26.8 7.1 32 125-156 82-113 (129)
262 TIGR02231 conserved hypothetic 37.9 6E+02 0.013 28.2 13.2 12 47-58 75-86 (525)
263 cd07651 F-BAR_PombeCdc15_like 37.9 2.4E+02 0.0051 28.0 9.3 13 83-95 179-191 (236)
264 KOG0979 Structural maintenance 37.9 5.4E+02 0.012 32.1 13.5 36 38-73 705-740 (1072)
265 KOG1655 Protein involved in va 37.9 1.9E+02 0.0041 29.8 8.5 25 194-218 120-144 (218)
266 KOG3850 Predicted membrane pro 37.8 1.4E+02 0.003 33.5 8.1 51 140-190 313-370 (455)
267 KOG1656 Protein involved in gl 37.7 40 0.00088 34.5 3.9 133 129-261 27-196 (221)
268 PF09177 Syntaxin-6_N: Syntaxi 37.7 1.4E+02 0.0031 26.0 6.8 44 168-211 41-88 (97)
269 PF05622 HOOK: HOOK protein; 37.4 11 0.00024 43.2 0.0 51 142-192 457-507 (713)
270 PF00038 Filament: Intermediat 37.3 4.6E+02 0.0099 26.6 16.5 31 126-156 184-214 (312)
271 PF11593 Med3: Mediator comple 37.3 6.3E+02 0.014 28.2 12.9 18 203-220 92-110 (379)
272 KOG4191 Histone acetyltransfer 37.1 3.7E+02 0.0081 30.8 11.3 19 134-152 443-461 (516)
273 PF10112 Halogen_Hydrol: 5-bro 37.1 2.1E+02 0.0046 27.6 8.6 24 133-156 71-94 (199)
274 cd09238 V_Alix_like_1 Protein- 37.0 4.6E+02 0.01 27.8 11.7 30 46-75 195-231 (339)
275 cd07649 F-BAR_GAS7 The F-BAR ( 36.9 4.4E+02 0.0095 26.8 11.1 15 132-146 203-217 (233)
276 PF05622 HOOK: HOOK protein; 36.7 12 0.00025 43.0 0.0 22 135-156 361-382 (713)
277 PF10368 YkyA: Putative cell-w 36.6 74 0.0016 31.7 5.5 52 46-104 82-134 (204)
278 KOG2072 Translation initiation 36.6 8.7E+02 0.019 30.0 14.7 38 87-124 620-665 (988)
279 PRK10869 recombination and rep 36.4 6.9E+02 0.015 28.4 14.9 47 167-213 262-309 (553)
280 PF10146 zf-C4H2: Zinc finger- 36.4 4.9E+02 0.011 26.7 17.4 39 47-93 5-43 (230)
281 PRK13415 flagella biosynthesis 36.3 80 0.0017 32.5 5.8 52 9-62 144-206 (219)
282 PRK07720 fliJ flagellar biosyn 36.3 3.4E+02 0.0074 24.9 10.2 114 41-188 14-128 (146)
283 KOG4429 Uncharacterized conser 36.0 6E+02 0.013 28.0 12.3 26 166-191 140-165 (421)
284 COG3352 FlaC Putative archaeal 35.9 3.5E+02 0.0076 26.8 9.7 22 136-157 78-99 (157)
285 PF02996 Prefoldin: Prefoldin 35.8 56 0.0012 28.5 4.1 32 125-156 72-103 (120)
286 PF06729 CENP-R: Kinetochore c 35.8 93 0.002 30.1 5.7 57 9-65 59-124 (139)
287 PRK12751 cpxP periplasmic stre 35.8 1.2E+02 0.0026 29.7 6.6 43 26-72 120-162 (162)
288 PF07851 TMPIT: TMPIT-like pro 35.8 44 0.00096 36.0 4.1 46 168-213 34-81 (330)
289 PF13949 ALIX_LYPXL_bnd: ALIX 35.8 4.7E+02 0.01 26.2 18.2 30 4-33 79-108 (296)
290 KOG1098 Putative SAM-dependent 35.7 91 0.002 36.8 6.7 44 41-102 284-327 (780)
291 COG3945 Uncharacterized conser 35.6 1E+02 0.0022 31.2 6.2 51 168-218 7-60 (189)
292 PF04220 YihI: Der GTPase acti 35.4 45 0.00099 32.9 3.8 33 183-215 108-144 (169)
293 COG2433 Uncharacterized conser 35.0 7.3E+02 0.016 29.5 13.5 14 183-196 505-518 (652)
294 cd07654 F-BAR_FCHSD The F-BAR 34.9 1E+02 0.0022 31.9 6.4 37 5-46 120-156 (264)
295 PF02388 FemAB: FemAB family; 34.8 90 0.0019 33.7 6.2 62 129-195 241-302 (406)
296 PRK09546 zntB zinc transporter 34.7 3.7E+02 0.008 27.8 10.4 58 133-194 153-210 (324)
297 KOG0995 Centromere-associated 34.7 7.9E+02 0.017 28.9 13.6 38 78-116 290-330 (581)
298 PF00669 Flagellin_N: Bacteria 34.6 3.3E+02 0.0072 24.2 10.9 63 4-74 14-76 (139)
299 KOG1885 Lysyl-tRNA synthetase 34.6 32 0.00068 39.1 2.9 28 526-554 487-527 (560)
300 smart00503 SynN Syntaxin N-ter 34.6 1.5E+02 0.0033 25.4 6.5 57 7-63 51-113 (117)
301 PF02994 Transposase_22: L1 tr 34.3 74 0.0016 34.2 5.5 22 135-156 142-163 (370)
302 PF03234 CDC37_N: Cdc37 N term 34.3 4E+02 0.0087 26.5 10.1 22 171-192 129-150 (177)
303 PF05957 DUF883: Bacterial pro 34.1 1.6E+02 0.0034 25.4 6.5 71 140-216 1-72 (94)
304 cd07651 F-BAR_PombeCdc15_like 33.8 4.8E+02 0.01 25.8 17.3 33 181-215 187-219 (236)
305 KOG0946 ER-Golgi vesicle-tethe 33.8 6.7E+02 0.014 30.9 13.2 26 168-193 857-882 (970)
306 KOG1850 Myosin-like coiled-coi 33.8 7E+02 0.015 27.7 17.9 35 172-206 291-326 (391)
307 cd07647 F-BAR_PSTPIP The F-BAR 33.5 4.3E+02 0.0093 26.4 10.3 14 84-97 183-196 (239)
308 COG5185 HEC1 Protein involved 33.3 6.5E+02 0.014 29.3 12.4 182 8-214 255-465 (622)
309 PF09728 Taxilin: Myosin-like 33.1 6.2E+02 0.013 26.9 14.6 26 170-195 283-308 (309)
310 PF04108 APG17: Autophagy prot 33.0 6.8E+02 0.015 27.4 13.0 125 9-152 251-382 (412)
311 PF02646 RmuC: RmuC family; I 32.9 1.2E+02 0.0026 31.6 6.6 47 8-59 1-47 (304)
312 TIGR03687 pupylate_cterm ubiqu 32.7 17 0.00036 27.6 0.3 22 200-221 3-24 (33)
313 PTZ00332 paraflagellar rod pro 32.7 8.6E+02 0.019 28.4 13.3 26 165-190 355-380 (589)
314 PRK10947 global DNA-binding tr 32.7 1.6E+02 0.0035 28.0 6.8 56 129-202 20-75 (135)
315 COG1722 XseB Exonuclease VII s 32.6 79 0.0017 27.8 4.4 40 177-216 11-51 (81)
316 COG4911 Uncharacterized conser 32.4 74 0.0016 30.0 4.4 64 130-200 15-79 (123)
317 cd00089 HR1 Protein kinase C-r 32.4 2.4E+02 0.0053 23.2 7.1 59 5-66 5-69 (72)
318 PF10211 Ax_dynein_light: Axon 32.3 2E+02 0.0043 28.3 7.6 10 55-64 86-95 (189)
319 COG2433 Uncharacterized conser 31.7 1.9E+02 0.0042 34.0 8.4 148 34-189 337-504 (652)
320 TIGR00634 recN DNA repair prot 31.7 3.4E+02 0.0075 30.5 10.3 20 132-151 279-298 (563)
321 KOG2604 Subunit of cis-Golgi t 31.7 1.5E+02 0.0032 35.2 7.5 93 125-218 100-207 (733)
322 PF06698 DUF1192: Protein of u 31.6 1.1E+02 0.0023 25.7 4.8 20 138-157 22-41 (59)
323 TIGR01280 xseB exodeoxyribonuc 31.5 70 0.0015 26.9 3.8 38 181-218 6-44 (67)
324 PRK00977 exodeoxyribonuclease 31.4 67 0.0015 27.8 3.8 37 181-217 15-52 (80)
325 PF03528 Rabaptin: Rabaptin; 31.2 2.2E+02 0.0047 26.4 7.2 51 3-57 18-70 (106)
326 COG1340 Uncharacterized archae 31.2 7E+02 0.015 26.9 14.2 24 183-206 265-289 (294)
327 PRK10328 DNA binding protein, 31.2 1.7E+02 0.0038 27.8 6.8 57 128-202 19-75 (134)
328 PF06103 DUF948: Bacterial pro 31.2 2.5E+02 0.0055 23.8 7.2 25 132-156 28-52 (90)
329 KOG4484 Uncharacterized conser 31.1 1.8E+02 0.004 29.4 7.1 77 130-215 48-131 (199)
330 KOG0624 dsRNA-activated protei 31.1 6.9E+02 0.015 28.3 12.0 21 52-72 152-172 (504)
331 PF09210 DUF1957: Domain of un 30.9 78 0.0017 28.6 4.3 35 172-206 54-88 (102)
332 KOG0243 Kinesin-like protein [ 30.9 1.1E+03 0.023 29.8 14.5 159 4-195 478-676 (1041)
333 KOG0681 Actin-related protein 30.6 3.5E+02 0.0076 31.8 10.0 43 17-61 249-291 (645)
334 cd04787 HTH_HMRTR_unk Helix-Tu 30.4 1E+02 0.0022 28.2 5.0 23 45-67 88-110 (133)
335 PRK14066 exodeoxyribonuclease 30.4 72 0.0016 27.5 3.8 38 180-217 8-46 (75)
336 PRK10865 protein disaggregatio 30.3 1E+03 0.022 28.6 15.8 51 46-106 413-463 (857)
337 PF04012 PspA_IM30: PspA/IM30 30.2 2.3E+02 0.0051 27.6 7.7 124 55-194 3-133 (221)
338 PF13166 AAA_13: AAA domain 30.2 8.6E+02 0.019 27.6 17.9 12 201-212 460-471 (712)
339 smart00806 AIP3 Actin interact 30.1 3.6E+02 0.0078 30.4 9.9 27 129-155 216-242 (426)
340 cd04770 HTH_HMRTR Helix-Turn-H 30.0 1.1E+02 0.0024 27.2 5.1 23 45-67 88-110 (123)
341 PF02203 TarH: Tar ligand bind 29.8 4.1E+02 0.009 23.8 9.6 61 12-72 81-143 (171)
342 PF12711 Kinesin-relat_1: Kine 29.7 1.8E+02 0.004 26.0 6.2 11 46-56 27-37 (86)
343 TIGR02044 CueR Cu(I)-responsiv 29.7 1E+02 0.0022 27.9 4.8 26 43-68 86-111 (127)
344 PF02252 PA28_beta: Proteasome 29.6 2.3E+02 0.005 27.3 7.4 65 43-107 13-92 (150)
345 PF15066 CAGE1: Cancer-associa 29.6 9.4E+02 0.02 27.9 14.8 54 126-179 467-523 (527)
346 PF06008 Laminin_I: Laminin Do 29.4 5.8E+02 0.013 25.8 10.6 53 50-102 153-212 (264)
347 PF09731 Mitofilin: Mitochondr 29.3 8.5E+02 0.018 27.3 16.4 51 17-67 224-275 (582)
348 COG1190 LysU Lysyl-tRNA synthe 29.0 46 0.001 37.8 3.0 41 503-554 418-471 (502)
349 TIGR00962 atpA proton transloc 29.0 6.7E+02 0.014 28.6 11.9 120 84-215 374-498 (501)
350 KOG2910 Uncharacterized conser 29.0 1E+02 0.0023 31.5 5.1 40 172-211 69-130 (209)
351 KOG0978 E3 ubiquitin ligase in 28.9 1.1E+03 0.024 28.4 13.9 179 10-193 354-572 (698)
352 PF07352 Phage_Mu_Gam: Bacteri 28.8 3.3E+02 0.0071 25.5 8.1 61 131-218 4-64 (149)
353 PF10481 CENP-F_N: Cenp-F N-te 28.8 6E+02 0.013 27.5 10.8 30 126-155 91-120 (307)
354 KOG2391 Vacuolar sorting prote 28.8 3.4E+02 0.0074 30.0 9.2 18 83-100 215-232 (365)
355 KOG4364 Chromatin assembly fac 28.8 1.1E+03 0.024 28.5 14.2 27 159-185 352-378 (811)
356 PF07061 Swi5: Swi5; InterPro 28.8 1.4E+02 0.0029 26.3 5.2 24 42-75 32-55 (83)
357 KOG0163 Myosin class VI heavy 28.7 9.1E+02 0.02 29.9 13.1 12 8-19 874-885 (1259)
358 PF10224 DUF2205: Predicted co 28.6 2.7E+02 0.0058 24.6 7.0 48 11-71 18-69 (80)
359 PF11932 DUF3450: Protein of u 28.5 1.3E+02 0.0029 30.1 5.9 67 40-147 50-119 (251)
360 PF10359 Fmp27_WPPW: RNA pol I 28.3 1.3E+02 0.0029 33.3 6.3 64 133-198 166-232 (475)
361 PF10186 Atg14: UV radiation r 28.1 2.8E+02 0.006 27.4 8.0 29 128-156 68-96 (302)
362 PRK00409 recombination and DNA 28.1 7E+02 0.015 29.8 12.3 22 80-101 575-596 (782)
363 KOG2129 Uncharacterized conser 28.0 9.7E+02 0.021 27.6 17.0 20 139-158 203-222 (552)
364 PRK11638 lipopolysaccharide bi 28.0 2E+02 0.0044 30.9 7.4 69 129-198 163-234 (342)
365 KOG0978 E3 ubiquitin ligase in 27.9 1.1E+03 0.024 28.3 16.5 136 52-213 502-641 (698)
366 PF00012 HSP70: Hsp70 protein; 27.9 3.4E+02 0.0074 29.8 9.3 84 23-156 507-596 (602)
367 cd07610 FCH_F-BAR The Extended 27.7 5E+02 0.011 24.1 16.8 40 11-56 2-41 (191)
368 PF10458 Val_tRNA-synt_C: Valy 27.6 3.5E+02 0.0075 22.2 7.4 56 137-192 4-65 (66)
369 PRK02220 4-oxalocrotonate taut 27.6 40 0.00087 26.2 1.7 28 518-552 9-36 (61)
370 PF08514 STAG: STAG domain ; 27.6 1.2E+02 0.0026 27.8 4.9 47 129-176 71-117 (118)
371 COG5394 Uncharacterized protei 27.5 4.3E+02 0.0093 26.8 8.9 93 43-155 99-192 (193)
372 KOG3647 Predicted coiled-coil 27.4 6.1E+02 0.013 27.6 10.5 57 128-192 103-159 (338)
373 PF03357 Snf7: Snf7; InterPro 27.2 2.9E+02 0.0062 25.2 7.4 36 56-98 25-60 (171)
374 TIGR02350 prok_dnaK chaperone 27.1 3.5E+02 0.0075 30.4 9.3 24 49-72 550-573 (595)
375 COG3937 Uncharacterized conser 26.8 2.8E+02 0.006 26.0 7.1 61 129-189 42-106 (108)
376 PF05377 FlaC_arch: Flagella a 26.8 2.2E+02 0.0048 23.8 5.8 48 139-194 2-49 (55)
377 PF00435 Spectrin: Spectrin re 26.8 3.3E+02 0.0071 21.6 8.6 77 126-211 8-84 (105)
378 PRK04406 hypothetical protein; 26.7 2.1E+02 0.0046 24.7 5.9 25 168-192 27-51 (75)
379 KOG3726 Uncharacterized conser 26.7 8.5E+02 0.018 29.3 12.4 90 128-221 308-410 (717)
380 PRK05183 hscA chaperone protei 26.7 2.3E+02 0.005 32.4 7.9 38 51-98 558-595 (616)
381 PF14182 YgaB: YgaB-like prote 26.6 3.1E+02 0.0067 24.5 7.0 15 83-97 55-69 (79)
382 PRK00286 xseA exodeoxyribonucl 26.5 8.5E+02 0.018 26.4 12.0 18 139-156 329-346 (438)
383 PRK07737 fliD flagellar cappin 26.5 9.7E+02 0.021 27.0 14.2 27 8-34 267-293 (501)
384 PF09597 IGR: IGR protein moti 26.4 1.3E+02 0.0029 24.9 4.5 25 68-99 31-55 (57)
385 KOG0980 Actin-binding protein 26.4 1.3E+03 0.029 28.6 15.7 52 10-61 348-404 (980)
386 PF15466 DUF4635: Domain of un 26.3 2.2E+02 0.0048 27.3 6.4 38 112-153 70-107 (135)
387 PF11068 YlqD: YlqD protein; 26.3 3.8E+02 0.0082 25.5 8.0 33 125-157 15-47 (131)
388 PRK00578 prfB peptide chain re 26.3 7.5E+02 0.016 27.2 11.3 8 206-213 144-151 (367)
389 PRK11820 hypothetical protein; 26.0 8.1E+02 0.017 25.9 11.7 110 42-186 151-288 (288)
390 COG5606 Uncharacterized conser 26.0 77 0.0017 28.8 3.3 45 21-75 2-46 (91)
391 PF04791 LMBR1: LMBR1-like mem 26.0 3E+02 0.0064 29.7 8.3 24 5-28 199-222 (471)
392 cd07634 BAR_GAP10-like The Bin 25.9 5.6E+02 0.012 26.2 9.7 62 150-215 124-188 (207)
393 PF08397 IMD: IRSp53/MIM homol 25.8 6.6E+02 0.014 24.9 10.3 26 82-115 61-86 (219)
394 PF12297 EVC2_like: Ellis van 25.7 1E+03 0.022 27.1 15.7 41 24-64 214-254 (429)
395 cd07610 FCH_F-BAR The Extended 25.7 5.5E+02 0.012 23.9 13.1 18 199-216 158-175 (191)
396 PRK03830 small acid-soluble sp 25.5 2.8E+02 0.0062 24.4 6.5 51 5-62 12-62 (73)
397 PRK14069 exodeoxyribonuclease 25.4 1.1E+02 0.0024 27.8 4.2 36 181-216 13-49 (95)
398 PRK13729 conjugal transfer pil 25.3 1.5E+02 0.0032 33.7 6.0 26 131-156 70-95 (475)
399 TIGR01010 BexC_CtrB_KpsE polys 25.3 6.5E+02 0.014 26.3 10.4 30 128-157 168-197 (362)
400 PF02050 FliJ: Flagellar FliJ 25.2 4E+02 0.0086 22.1 8.3 30 127-156 49-78 (123)
401 PF12889 DUF3829: Protein of u 25.1 3.4E+02 0.0075 26.7 8.0 114 89-215 83-203 (276)
402 TIGR03007 pepcterm_ChnLen poly 25.1 9.1E+02 0.02 26.3 16.6 19 41-59 170-188 (498)
403 cd07596 BAR_SNX The Bin/Amphip 25.1 5.6E+02 0.012 23.8 15.7 19 46-64 60-78 (218)
404 PRK13923 putative spore coat p 25.1 7E+02 0.015 24.9 10.7 52 12-64 18-76 (170)
405 KOG4677 Golgi integral membran 25.0 1.4E+02 0.003 34.1 5.7 127 42-189 156-289 (554)
406 PF10234 Cluap1: Clusterin-ass 25.0 3.9E+02 0.0083 28.3 8.6 83 129-221 161-251 (267)
407 PF12325 TMF_TATA_bd: TATA ele 24.9 2.9E+02 0.0063 25.8 6.9 39 173-214 72-110 (120)
408 COG1842 PspA Phage shock prote 24.9 2.2E+02 0.0048 29.1 6.7 105 80-193 36-140 (225)
409 PF08537 NBP1: Fungal Nap bind 24.8 3E+02 0.0064 30.0 7.9 53 130-200 175-227 (323)
410 KOG0946 ER-Golgi vesicle-tethe 24.7 1.4E+03 0.031 28.3 14.8 25 132-156 864-888 (970)
411 PRK15455 PrkA family serine pr 24.7 1E+03 0.022 28.4 12.5 34 42-75 477-523 (644)
412 COG5481 Uncharacterized conser 24.6 3.8E+02 0.0082 23.1 6.9 31 7-37 5-35 (67)
413 PF14728 PHTB1_C: PTHB1 C-term 24.6 6.1E+02 0.013 27.8 10.3 108 81-218 213-322 (377)
414 PF14584 DUF4446: Protein of u 24.6 1.6E+02 0.0035 28.3 5.4 58 52-116 22-86 (151)
415 PF09074 Mer2: Mer2; InterPro 24.6 5.4E+02 0.012 26.2 9.2 25 125-149 144-168 (190)
416 KOG1451 Oligophrenin-1 and rel 24.3 3E+02 0.0066 32.6 8.2 14 181-194 499-512 (812)
417 PF08581 Tup_N: Tup N-terminal 24.3 1.2E+02 0.0026 26.6 4.1 49 40-93 26-75 (79)
418 PRK13343 F0F1 ATP synthase sub 24.3 8.7E+02 0.019 27.8 11.7 117 89-215 380-499 (502)
419 TIGR00383 corA magnesium Mg(2+ 24.0 4.1E+02 0.0089 27.0 8.5 30 166-195 175-204 (318)
420 KOG1899 LAR transmembrane tyro 24.0 3.6E+02 0.0078 32.2 8.7 90 5-95 205-315 (861)
421 PTZ00234 variable surface prot 24.0 3.7E+02 0.008 30.1 8.7 44 171-214 142-192 (433)
422 PRK13411 molecular chaperone D 23.8 4.6E+02 0.01 30.2 9.7 20 51-70 556-575 (653)
423 PRK14064 exodeoxyribonuclease 23.8 1.3E+02 0.0028 25.9 4.2 35 181-215 11-46 (75)
424 PLN03223 Polycystin cation cha 23.8 6.4E+02 0.014 32.8 11.2 54 47-105 1442-1516(1634)
425 cd01107 HTH_BmrR Helix-Turn-He 23.7 1E+02 0.0022 27.2 3.7 25 43-67 82-106 (108)
426 PF15294 Leu_zip: Leucine zipp 23.7 9.2E+02 0.02 25.8 13.5 186 12-215 7-226 (278)
427 COG4079 Uncharacterized protei 23.7 2.5E+02 0.0053 30.0 6.8 48 17-64 147-205 (293)
428 PF01627 Hpt: Hpt domain; Int 23.5 3E+02 0.0065 21.7 6.0 36 177-214 50-85 (90)
429 cd09236 V_AnPalA_UmRIM20_like 23.5 9.2E+02 0.02 25.7 13.2 184 3-213 128-350 (353)
430 PF05701 WEMBL: Weak chloropla 23.4 1.1E+03 0.024 26.6 16.6 22 41-62 213-234 (522)
431 PF06248 Zw10: Centromere/kine 23.4 1.1E+03 0.024 26.7 13.7 52 47-105 11-62 (593)
432 PF09537 DUF2383: Domain of un 23.4 4.2E+02 0.0091 22.9 7.3 59 130-194 1-59 (111)
433 KOG0981 DNA topoisomerase I [R 23.3 2.6E+02 0.0056 33.0 7.4 60 130-189 636-699 (759)
434 PF01806 Paramyxo_P: Paramyxov 23.3 1E+02 0.0022 31.9 3.9 31 10-44 70-100 (248)
435 PF04136 Sec34: Sec34-like fam 23.1 6.2E+02 0.013 24.2 9.0 72 6-107 11-84 (157)
436 KOG4348 Adaptor protein CMS/SE 23.1 1.1E+02 0.0024 34.8 4.6 33 124-156 556-588 (627)
437 PF12999 PRKCSH-like: Glucosid 23.1 2.2E+02 0.0048 28.4 6.1 26 131-156 147-172 (176)
438 PF01031 Dynamin_M: Dynamin ce 23.0 3.2E+02 0.007 27.8 7.5 11 58-68 199-209 (295)
439 PF06810 Phage_GP20: Phage min 22.8 1.3E+02 0.0029 28.8 4.5 50 170-221 86-137 (155)
440 cd01108 HTH_CueR Helix-Turn-He 22.8 1.8E+02 0.0038 26.4 5.1 23 45-67 88-110 (127)
441 PF13094 CENP-Q: CENP-Q, a CEN 22.8 6.4E+02 0.014 23.7 10.0 27 41-67 50-76 (160)
442 PF05531 NPV_P10: Nucleopolyhe 22.8 4E+02 0.0086 23.5 6.9 48 134-186 8-55 (75)
443 PF03993 DUF349: Domain of Unk 22.7 4.1E+02 0.0089 21.4 8.6 33 41-73 22-54 (77)
444 PF13747 DUF4164: Domain of un 22.7 5.4E+02 0.012 22.7 9.3 57 10-72 5-61 (89)
445 KOG4673 Transcription factor T 22.6 1.5E+03 0.032 27.8 14.0 138 10-159 485-634 (961)
446 PLN03188 kinesin-12 family pro 22.6 2.1E+02 0.0045 36.3 6.9 32 125-156 879-910 (1320)
447 COG2924 Uncharacterized protei 22.6 64 0.0014 29.1 2.1 25 85-109 60-84 (90)
448 TIGR00020 prfB peptide chain r 22.6 4.6E+02 0.0099 28.8 8.9 16 135-150 97-112 (364)
449 PRK14070 exodeoxyribonuclease 22.5 1.1E+02 0.0025 26.1 3.5 31 182-212 1-32 (69)
450 PRK11281 hypothetical protein; 22.4 1.6E+03 0.035 28.3 18.4 56 44-107 126-181 (1113)
451 PF14257 DUF4349: Domain of un 22.4 2.3E+02 0.0051 28.4 6.3 44 166-213 132-182 (262)
452 PF09548 Spore_III_AB: Stage I 22.4 6.1E+02 0.013 24.3 8.8 30 4-33 59-93 (170)
453 PRK15422 septal ring assembly 22.4 1.7E+02 0.0036 26.1 4.6 32 126-157 14-45 (79)
454 PF01576 Myosin_tail_1: Myosin 22.3 29 0.00063 41.1 0.0 109 83-193 589-720 (859)
455 cd07600 BAR_Gvp36 The Bin/Amph 22.3 8.8E+02 0.019 25.1 13.3 42 11-59 112-153 (242)
456 PRK05244 Der GTPase activator; 22.3 95 0.0021 31.0 3.5 33 183-215 107-143 (177)
457 PF15070 GOLGA2L5: Putative go 22.3 1.3E+03 0.028 27.1 14.9 27 168-194 288-314 (617)
458 PF09006 Surfac_D-trimer: Lung 22.2 81 0.0018 25.5 2.4 18 139-156 1-18 (46)
459 PF01923 Cob_adeno_trans: Coba 22.2 6.2E+02 0.013 24.1 8.8 71 132-215 25-98 (163)
460 smart00721 BAR BAR domain. 22.2 5.1E+02 0.011 24.7 8.3 56 9-64 134-195 (239)
461 KOG0977 Nuclear envelope prote 22.1 6.2E+02 0.013 29.5 10.1 47 46-95 222-273 (546)
462 CHL00059 atpA ATP synthase CF1 22.1 1.1E+03 0.024 27.0 12.0 116 90-215 360-478 (485)
463 PF05557 MAD: Mitotic checkpoi 22.0 30 0.00065 39.8 0.0 15 527-541 616-630 (722)
464 cd04786 HTH_MerR-like_sg7 Heli 22.0 1.1E+02 0.0023 28.4 3.6 23 46-68 88-110 (131)
465 PRK00290 dnaK molecular chaper 21.9 4.8E+02 0.01 29.7 9.3 21 50-70 553-573 (627)
466 PF10475 DUF2450: Protein of u 21.9 4.3E+02 0.0093 27.2 8.2 72 1-72 66-144 (291)
467 PF12848 ABC_tran_2: ABC trans 21.8 2.8E+02 0.0062 22.8 5.8 33 40-72 21-53 (85)
468 TIGR02350 prok_dnaK chaperone 21.8 6.9E+02 0.015 28.1 10.4 18 198-215 571-588 (595)
469 PF05639 Pup: Pup-like protein 21.8 23 0.00051 30.5 -0.7 26 197-222 36-61 (69)
470 PF14712 Snapin_Pallidin: Snap 21.8 3.9E+02 0.0084 22.7 6.7 56 42-104 31-86 (92)
471 PF07106 TBPIP: Tat binding pr 21.7 2.3E+02 0.0051 26.7 5.8 24 135-158 114-137 (169)
472 PRK00488 pheS phenylalanyl-tRN 21.6 2.5E+02 0.0055 30.5 6.7 47 108-156 31-82 (339)
473 PF15469 Sec5: Exocyst complex 21.5 7E+02 0.015 23.6 9.1 114 60-212 2-119 (182)
474 PF10779 XhlA: Haemolysin XhlA 21.4 1.3E+02 0.0028 25.1 3.6 42 170-211 10-52 (71)
475 PF10805 DUF2730: Protein of u 21.4 2.3E+02 0.0051 25.4 5.5 63 130-192 35-98 (106)
476 KOG4822 Predicted nuclear memb 21.3 6E+02 0.013 32.6 10.1 45 421-471 1740-1784(1906)
477 cd07616 BAR_Endophilin_B1 The 21.3 8.7E+02 0.019 25.1 10.1 85 10-104 134-221 (229)
478 PF00816 Histone_HNS: H-NS his 21.3 60 0.0013 27.9 1.7 16 141-156 2-17 (93)
479 PF13148 DUF3987: Protein of u 21.3 3.8E+02 0.0083 27.6 7.7 46 171-216 316-367 (378)
480 PF13815 Dzip-like_N: Iguana/D 21.2 2.9E+02 0.0063 25.0 6.1 27 130-156 66-92 (118)
481 cd01109 HTH_YyaN Helix-Turn-He 21.2 2.2E+02 0.0048 25.1 5.3 21 46-66 89-109 (113)
482 cd04769 HTH_MerR2 Helix-Turn-H 21.2 1.2E+02 0.0026 27.0 3.6 27 42-68 85-111 (116)
483 KOG2398 Predicted proline-seri 21.1 1.4E+03 0.03 26.9 29.3 14 205-218 225-238 (611)
484 cd07674 F-BAR_FCHO1 The F-BAR 21.1 5.9E+02 0.013 25.9 8.9 40 11-50 118-161 (261)
485 KOG0579 Ste20-like serine/thre 21.0 1.6E+03 0.035 27.7 15.5 60 4-63 799-870 (1187)
486 KOG0962 DNA repair protein RAD 21.0 1.9E+03 0.041 28.4 15.6 91 47-156 432-523 (1294)
487 PF08006 DUF1700: Protein of u 21.0 97 0.0021 29.4 3.2 49 181-237 6-54 (181)
488 PF04102 SlyX: SlyX; InterPro 21.0 4.1E+02 0.0089 22.2 6.5 16 133-148 14-29 (69)
489 smart00787 Spc7 Spc7 kinetocho 21.0 1E+03 0.022 25.4 15.8 32 127-158 229-260 (312)
490 PF03938 OmpH: Outer membrane 21.0 6.4E+02 0.014 23.0 10.6 59 10-74 23-81 (158)
491 cd09237 V_ScBro1_like Protein- 20.9 1E+03 0.022 25.3 14.2 42 172-213 308-353 (356)
492 PRK05408 oxidative damage prot 20.9 72 0.0016 28.9 2.1 14 85-98 60-73 (90)
493 PRK14063 exodeoxyribonuclease 20.9 1.4E+02 0.003 25.8 3.8 36 181-216 10-46 (76)
494 KOG0307 Vesicle coat complex C 20.9 1.3E+03 0.029 29.0 12.9 12 101-112 461-472 (1049)
495 PF11176 DUF2962: Protein of u 20.8 2.8E+02 0.0061 26.7 6.2 46 127-177 67-112 (155)
496 PF10018 Med4: Vitamin-D-recep 20.8 4.8E+02 0.01 25.4 7.9 55 10-66 9-63 (188)
497 COG0497 RecN ATPase involved i 20.8 1.4E+03 0.03 26.8 13.1 22 45-66 207-228 (557)
498 PF05278 PEARLI-4: Arabidopsis 20.7 3.2E+02 0.0069 29.1 7.0 52 42-99 210-262 (269)
499 COG5509 Uncharacterized small 20.7 68 0.0015 27.5 1.8 30 138-167 26-55 (65)
500 KOG0963 Transcription factor/C 20.7 1.5E+03 0.032 27.1 17.3 184 7-207 240-451 (629)
No 1
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=2e-91 Score=682.40 Aligned_cols=227 Identities=63% Similarity=0.919 Sum_probs=217.2
Q ss_pred ccccchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHH
Q 008136 2 GASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYE 81 (576)
Q Consensus 2 aa~RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~ 81 (576)
|++||||+|||||||||+|||+.||+||+||++++|+|||||||+|||||||||||||||||+|++++|||||+
T Consensus 1 m~~RKLQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diKdk~------ 74 (233)
T PF04065_consen 1 MAKRKLQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKK------ 74 (233)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccHH------
Confidence 35599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccC
Q 008136 82 QALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKG 161 (576)
Q Consensus 82 ~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~ 161 (576)
+|+|+||+||++|||||+|||+|||||||||||+++.++||.+++|.|+++||+++|++|++|||.||+|+|+|+.+++
T Consensus 75 -~L~e~Rk~IE~~MErFK~vEkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~k 153 (233)
T PF04065_consen 75 -KLLENRKLIEEQMERFKVVEKESKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKK 153 (233)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975433
Q ss_pred CC-----CCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHHhCCC-CccccCCccccccCCCC
Q 008136 162 KT-----RPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPL 235 (576)
Q Consensus 162 Kk-----~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~nqd-DF~E~~dde~iYd~L~L 235 (576)
|+ +.+|+++|+.+|+||+|||.+||.|||+|+||.|+|++|++|||||+|||++|+| ||++ +++|||+|+|
T Consensus 154 Kkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l~~e~V~~ikedieyYve~n~d~Df~e---de~iYddl~L 230 (233)
T PF04065_consen 154 KKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDELDPEQVEDIKEDIEYYVESNQDPDFEE---DEDIYDDLNL 230 (233)
T ss_pred cCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCcccc---hHhHhhccCC
Confidence 32 4689999999999999999999999999999999999999999999999999999 8875 5899999999
Q ss_pred CCc
Q 008136 236 DKV 238 (576)
Q Consensus 236 de~ 238 (576)
+++
T Consensus 231 dee 233 (233)
T PF04065_consen 231 DEE 233 (233)
T ss_pred CCC
Confidence 974
No 2
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=100.00 E-value=1.3e-86 Score=704.89 Aligned_cols=221 Identities=62% Similarity=0.884 Sum_probs=214.9
Q ss_pred ccccchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHH
Q 008136 2 GASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYE 81 (576)
Q Consensus 2 aa~RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~ 81 (576)
|++||||+|||||||||+|||++||+||+||++++|.|||||||+|||||||||||||||||||++++|||||+
T Consensus 1 ~~~RKLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~------ 74 (575)
T KOG2150|consen 1 MAKRKLQQEIDRCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDKD------ 74 (575)
T ss_pred CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHH------
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccC
Q 008136 82 QALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKG 161 (576)
Q Consensus 82 ~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~ 161 (576)
.|++||||||.+|||||+|||||||||||||||+.+.|+||+|++|.|+++||++|||+|++|+|+||++
T Consensus 75 -~L~d~RrlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~--------- 144 (575)
T KOG2150|consen 75 -SLLDNRRLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAE--------- 144 (575)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHHhCCC-CccccCCccccccCCCCCCccc
Q 008136 162 KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVES 240 (576)
Q Consensus 162 Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~nqd-DF~E~~dde~iYd~L~Lde~e~ 240 (576)
+++.+++||+|||.+||+|||+|+|++++|+.|++++|||.||||+||| ||.| ++.||++|+|++.+.
T Consensus 145 --------~~e~~~erh~~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe~nqdpdF~e---~e~iYd~l~le~~e~ 213 (575)
T KOG2150|consen 145 --------ELERFIERHRWHQQKLELILRLLDNDELDPEAVNKVQDDITYYVESNQDPDFLE---DETIYDDLNLEELEA 213 (575)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHhhhhHHHHHHHHhccCchhhh---hhHHhhccCchhhhh
Confidence 8999999999999999999999999999999999999999999999999 8886 579999999999998
Q ss_pred cccccccCC
Q 008136 241 LEDLVTIGP 249 (576)
Q Consensus 241 ~~~~~~~~p 249 (576)
..++++.+.
T Consensus 214 ~~~~~~~~~ 222 (575)
T KOG2150|consen 214 SMDAVAPGS 222 (575)
T ss_pred hHhhhcCCc
Confidence 888877654
No 3
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=100.00 E-value=5.2e-67 Score=537.05 Aligned_cols=198 Identities=46% Similarity=0.743 Sum_probs=193.6
Q ss_pred HHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHH
Q 008136 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLI 91 (576)
Q Consensus 12 Dr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlI 91 (576)
+++|++|-|||+.||+||+|+..++|.+||||||+|||+|||||||+|||||||++++|||||. .|++|||||
T Consensus 1 ~~~~~~~~e~i~~fd~iyek~~~s~~~s~~ekle~dlk~~ikklq~~rdqiktw~s~~dikdk~-------~l~~nrrli 73 (548)
T COG5665 1 DKLLKKVKEGIEDFDDIYEKFQSTDNSSHREKLESDLKREIKKLQKHRDQIKTWLSKEDVKDKQ-------VLMTNRRLI 73 (548)
T ss_pred ChhHHHHHhhhhhHHHHHHHHhccCchhHHHHHhhHHHHHHHHHHHHHHHHHHhhcccccchHH-------HHHHhHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHH
Q 008136 92 EREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHL 171 (576)
Q Consensus 92 E~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eL 171 (576)
|..||+||.|||+||||+||||||..+.++||+|++|.++..||.+|+|+|++|.|.+||+ ++
T Consensus 74 e~~me~fk~ve~~mk~k~fske~ls~~~~~dpke~~k~d~i~~i~~~~~el~~q~e~~ea~-----------------e~ 136 (548)
T COG5665 74 ENGMERFKSVEKLMKTKQFSKEALTNPDIIDPKELKKRDQVLFIHDCLDELQKQLEQYEAQ-----------------EN 136 (548)
T ss_pred HhHHHHHHHHHHHHHHHHhhHhhccCcccCChhHhccccceehHHHHHHHHHHHHHHHHHH-----------------Hh
Confidence 9999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHHhCCC-CccccCCccccccCCCCCC
Q 008136 172 ETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDK 237 (576)
Q Consensus 172 e~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~nqd-DF~E~~dde~iYd~L~Lde 237 (576)
+.+++||+|||.+||+|||.|+|.+++||-|++|+|||.||||+|++ ||.|| |+|||+|| +|
T Consensus 137 e~~~erh~~h~~~le~i~~~l~n~~~~pe~v~~~q~di~yyve~~~~~df~e~---~~~y~~~~-~e 199 (548)
T COG5665 137 EEQTERHEFHIANLENILKKLQNNEMDPEPVEEFQDDIKYYVENNDDPDFIEY---DTIYEDMG-CE 199 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHhhcCCCcchhhh---hhHHHhhc-cc
Confidence 99999999999999999999999999999999999999999999999 99975 69999999 44
No 4
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=95.82 E-value=0.33 Score=48.74 Aligned_cols=174 Identities=20% Similarity=0.266 Sum_probs=87.5
Q ss_pred hHHHHHHHhhcCCC--hhhHHHHHHHHHHHHHHHHHhH-HHHHhhhcccc-hhhh-h-h--hhhHHHHHHHHHHHHHHHH
Q 008136 24 VFDSIWNKVYDTDN--ANQKEKFEADLKKEIKKLQRYR-DQIKTWIQSSE-IKDK-K-V--SASYEQALVDARKLIEREM 95 (576)
Q Consensus 24 ~Fd~iyeKl~~a~n--~nQKEKlE~DLKKEIKKLQRlR-DQIKtWlasne-IKDK-~-~--~a~~~~~L~E~RKlIE~~M 95 (576)
.|..-|+.+-...- ++.-..|-.-|..+++.+++++ +|+|.|-..-+ +-+. . + .......|..+|+.-|.
T Consensus 57 tl~~~w~~~~~~~E~~a~~H~~l~~~L~~~~~~i~~~~~~~~k~~kk~~e~~~~~~~~~q~~q~~~~~l~kaK~~Y~~-- 134 (261)
T cd07674 57 TFAPMWEVFRVSSDKLALCHLELMRKLNDLIKDINRYGDEQVKIHKKTKEEAIGTLEAVQSLQVQSQHLQKSRENYHS-- 134 (261)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 47777777654321 2234444444555555566555 69999988522 1010 0 0 11223445555665555
Q ss_pred HHHHHHHhhhccccccccccCCCCCCChhHHHHHH-----HHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHH
Q 008136 96 ERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSE-----TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTH 170 (576)
Q Consensus 96 ErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E-----~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~e 170 (576)
++|..|+..+ .|. .+++.+|.. +.+=...+++.++.-...|+.++...-.+=-.-...||..
T Consensus 135 -~cke~e~a~~------~~~------s~k~leK~~~K~~ka~~~y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~ 201 (261)
T cd07674 135 -KCVEQERLRR------EGV------PQKELEKAELKTKKAAESLRGSVEKYNRARGDFEQKMLESAQKFQDIEETHLRH 201 (261)
T ss_pred -HHHHHHHHHh------cCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455542 222 334333321 2222455555555555555544332200000012356777
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHhhhCCCCChhhhhhhhHHHHHHHHhCCCCc
Q 008136 171 LETSITRHKAHIM--------KLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDF 220 (576)
Q Consensus 171 Le~~ieRhk~HI~--------kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~nqdDF 220 (576)
+...|-.+--|+. ..|.|.+.|++ +| +.+||..||+.+...+
T Consensus 202 lk~~L~~~~~~~~~~~~~~~~~~e~~~~~l~~--id------~~~Di~~fv~~~~tG~ 251 (261)
T cd07674 202 MKLLIKGYSHSVEDTHVQIGQVHEEFKQNVEN--VG------VENLIRKFAESKGTGK 251 (261)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHh--CC------HHHHHHHHHHhCCCCC
Confidence 7777777765542 33555666555 33 4578999999876543
No 5
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.74 E-value=0.83 Score=49.18 Aligned_cols=138 Identities=14% Similarity=0.285 Sum_probs=63.3
Q ss_pred cchhhhHHHHHHHHHH---hHHhHHHHHHHhhcCCCh------hhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhh
Q 008136 5 RKLQGEIDRVLKKVQE---GVDVFDSIWNKVYDTDNA------NQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKK 75 (576)
Q Consensus 5 RKLQ~EIDr~LKKV~E---GVe~Fd~iyeKl~~a~n~------nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~ 75 (576)
|+++++|+.+..++.+ .++.|+...+.+...... ++.+++....+.-..++.+++++|..+-. ++.+-
T Consensus 177 ~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~--~i~~~- 253 (562)
T PHA02562 177 RELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM--DIEDP- 253 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccH-
Confidence 4555566555554444 455554444444332211 11222222222223333455555555542 22221
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCC--CCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHh
Q 008136 76 VSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQ--PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAEL 153 (576)
Q Consensus 76 ~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~--~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEi 153 (576)
+...+.|.+.+..++..++.|+..-+-.+ +.+-... ..++.. .....-|.+-|++|+.|++.++..+
T Consensus 254 --~~~L~~l~~~~~~~~~~l~~~~~~~~~~~-----~~~~Cp~C~~~~~~~----~~~~~~l~d~i~~l~~~l~~l~~~i 322 (562)
T PHA02562 254 --SAALNKLNTAAAKIKSKIEQFQKVIKMYE-----KGGVCPTCTQQISEG----PDRITKIKDKLKELQHSLEKLDTAI 322 (562)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCCCCCCcCCCc----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334566777777777777765544333 1111100 111111 3333445666667777766666666
Q ss_pred hhh
Q 008136 154 EGL 156 (576)
Q Consensus 154 E~L 156 (576)
..+
T Consensus 323 ~~~ 325 (562)
T PHA02562 323 DEL 325 (562)
T ss_pred HHH
Confidence 644
No 6
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.21 E-value=3.3 Score=43.09 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHH
Q 008136 166 PRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYV 213 (576)
Q Consensus 166 ~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYV 213 (576)
.+++++...+..+.--|..+|.++. .+...+..+|..||..++..=
T Consensus 244 ~~i~~~~~~k~~l~~eI~e~~~~~~--~~r~~t~~Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 244 EKIEELEEQKQELLAEIAEAEKIRE--ECRGWTRSEVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHH
Confidence 3467777888888888888887776 566689999999999988753
No 7
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=93.73 E-value=2.1 Score=43.72 Aligned_cols=172 Identities=18% Similarity=0.257 Sum_probs=80.5
Q ss_pred hHHHHHHHhhcCC-C-hhhHHHHHHHHHHHHHHHHHhH----HHHHhhhc--ccchh-hhhhhhhHHHHHHHHHHHHHHH
Q 008136 24 VFDSIWNKVYDTD-N-ANQKEKFEADLKKEIKKLQRYR----DQIKTWIQ--SSEIK-DKKVSASYEQALVDARKLIERE 94 (576)
Q Consensus 24 ~Fd~iyeKl~~a~-n-~nQKEKlE~DLKKEIKKLQRlR----DQIKtWla--sneIK-DK~~~a~~~~~L~E~RKlIE~~ 94 (576)
.|...|+.+.... . +++...|-.-|+.+++.|.+++ .+-|.|-. .+-+| =+. .+.....|..+|+.-|.
T Consensus 64 t~~~~~~~~~~e~e~~a~~H~~la~~L~~~~~~l~~~~~~~~k~rK~~ke~~~~~~~~~~~-~~~~~~~~~KaK~~Y~~- 141 (269)
T cd07673 64 TFAPVWDVFKTSTEKLANCHLELVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQN-IQSITQALQKSKENYNA- 141 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHH-
Confidence 3666677773322 2 3445555555555555555555 44455521 11111 111 12333455555555553
Q ss_pred HHHHHHHHhhhccccccccccCCCCCCChhHHHHH-----HHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhH
Q 008136 95 MERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKS-----ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLT 169 (576)
Q Consensus 95 MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~-----E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~ 169 (576)
+.++.|+..| ++. .+++.+|. .+.+=...+|+.|+.--..++.++...-.+=-.-...||.
T Consensus 142 --~c~e~e~~~~------~~~------t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~ 207 (269)
T cd07673 142 --KCLEQERLKK------EGA------TQREIEKAAVKSKKATESYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLI 207 (269)
T ss_pred --HHHHHHHHHh------cCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455433 221 12333332 1222235555555555555555543331100001124566
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHhhhCCCCChhhhhhhhHHHHHHHHhCCCC
Q 008136 170 HLETSITRHKAHIMK--------LELILRLLDNDELSPEQVNDVKDLLEDYVERNQDD 219 (576)
Q Consensus 170 eLe~~ieRhk~HI~k--------LE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~nqdD 219 (576)
.+...|-.+--|+.. +|.|-+.|++ + ++..||..||+++...
T Consensus 208 ~~k~~l~~y~~~~s~~~~~~~~~~e~ir~~le~--~------d~~~Di~~fi~~~gTG 257 (269)
T cd07673 208 RIKEIIGSYSNSVKEIHIQIGQVHEEFINNMAN--T------TVESLIQKFAESKGTG 257 (269)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHh--C------CHHHHHHHHHHhcCCC
Confidence 666666555555443 3555555555 3 3457888999887653
No 8
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.62 E-value=1.3 Score=53.28 Aligned_cols=131 Identities=22% Similarity=0.303 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCC
Q 008136 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQ 117 (576)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~ 117 (576)
.++.+-+...++..-.++..-.++++.|+.+ +++++.| =...|.++|+.|+.-.++-+.||..
T Consensus 731 d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~-eL~~~Gv---D~~~I~~l~~~i~~L~~~l~~ie~~------------- 793 (1201)
T PF12128_consen 731 DEQIEQIKQEIAAAKQEAKEQLKELEQQYNQ-ELAGKGV---DPERIQQLKQEIEQLEKELKRIEER------------- 793 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 4445555556666666666777778888874 6665552 2336777777777655555555431
Q ss_pred CCCCChhHHHHHHHHHHHHHH----------HHHHHHhHhhHHHHhhhhhcccCC---CCCchhHHHHHHHHHHHHHHHH
Q 008136 118 QPKTDPKEKAKSETRDWLNNL----------VSELESQIDSFEAELEGLTVKKGK---TRPPRLTHLETSITRHKAHIMK 184 (576)
Q Consensus 118 ~~K~DP~EkeK~E~~~WL~~~----------IdeL~~QiE~~EaEiE~Ls~KK~K---k~~~rl~eLe~~ieRhk~HI~k 184 (576)
+..=.+...|+... ..+|..|+..++.++..+..+..+ .-..++.+++..+...+-++..
T Consensus 794 -------r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 866 (1201)
T PF12128_consen 794 -------RAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQ 866 (1201)
T ss_pred -------HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223455555554 234555555555555555321111 1123355556666666666666
Q ss_pred HHHHHHhh
Q 008136 185 LELILRLL 192 (576)
Q Consensus 185 LE~lLRlL 192 (576)
|+..++.|
T Consensus 867 ~~~~l~~l 874 (1201)
T PF12128_consen 867 LEEQLRRL 874 (1201)
T ss_pred HHHHHHHH
Confidence 65555533
No 9
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.77 E-value=4.6 Score=45.54 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHhhhccc
Q 008136 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69 (576)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasn 69 (576)
..+|+.+|.+++..-+++.+.+++++.|+++.
T Consensus 261 ~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~ 292 (650)
T TIGR03185 261 FEEREQLERQLKEIEAARKANRAQLRELAADP 292 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45688999999998899999999999999765
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.55 E-value=3.6 Score=41.48 Aligned_cols=100 Identities=27% Similarity=0.316 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhHHH-HHhhhccc------chhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhccccccccccCCCC
Q 008136 48 LKKEIKKLQRYRDQ-IKTWIQSS------EIKDKKVSASYEQALVDARKLIEREMERFK-ICEKETKTKAFSKEGLGQQP 119 (576)
Q Consensus 48 LKKEIKKLQRlRDQ-IKtWlasn------eIKDK~~~a~~~~~L~E~RKlIE~~MErFK-~vEKE~KTKafSKEGL~~~~ 119 (576)
|+.||.-|.+..++ |+.+...- ++++.. ..-+...|.+.|.--|..+.++| .+|...+.|-- .|..
T Consensus 129 L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~-~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~---~l~~-- 202 (312)
T PF00038_consen 129 LKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFR-SSDLSAALREIRAQYEEIAQKNREELEEWYQSKLE---ELRQ-- 202 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTT-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhhccccccceeecccc-cccchhhhhhHHHHHHHHHhhhhhhhhhhcccccc---cccc--
Confidence 55666666655554 66666443 333221 24567788888888888888887 55655555421 1111
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhh
Q 008136 120 KTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (576)
Q Consensus 120 K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls 157 (576)
.-....+...-+..-+.+++.++..++.++++|.
T Consensus 203 ----~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~ 236 (312)
T PF00038_consen 203 ----QSEKSSEELESAKEELKELRRQIQSLQAELESLR 236 (312)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cccccccccchhHhHHHHHHhhhhHhhhhhhccc
Confidence 0112234445556667777777777777777773
No 11
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=92.21 E-value=0.58 Score=42.51 Aligned_cols=87 Identities=23% Similarity=0.400 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHhhhhh------cccCCCCC-----chhHHHHHHHHHHHHHHHHHHHH-----------
Q 008136 131 TRDWLNNLVSELESQIDSFEAELEGLT------VKKGKTRP-----PRLTHLETSITRHKAHIMKLELI----------- 188 (576)
Q Consensus 131 ~~~WL~~~IdeL~~QiE~~EaEiE~Ls------~KK~Kk~~-----~rl~eLe~~ieRhk~HI~kLE~l----------- 188 (576)
+.-=|+.+++.|++++..+|.+++.+. .++|++.. .++..++..+++......+||.+
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~ 81 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQ 81 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888899999999999888873 23333321 12334444555544444445443
Q ss_pred ------------HHhhhCCCCChhhhhhhhHHHHHHHHhCCC
Q 008136 189 ------------LRLLDNDELSPEQVNDVKDLLEDYVERNQD 218 (576)
Q Consensus 189 ------------LRlLdNd~Ldpe~V~dIKEdIeyYVE~nqd 218 (576)
|+.+ |..+++++|+++-++++..++..++
T Consensus 82 ~v~~al~~~~~~Lk~~-~~~i~~~~v~~~~d~~~e~~e~~~e 122 (171)
T PF03357_consen 82 QVVKALKQSSKALKKI-NKQINLDKVEKLMDDFQEEMEDQDE 122 (171)
T ss_dssp HHSSS----SHHHHHH-HHSTTSCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3333 5568999999999999999987655
No 12
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=91.63 E-value=2.8 Score=47.92 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=28.7
Q ss_pred hhhhHHHHHHHHHHhHHhHHHHHHHhhcCCC
Q 008136 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN 37 (576)
Q Consensus 7 LQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n 37 (576)
-|.|||-+.|+-.+|...|=+||+++..+..
T Consensus 71 yQ~EiD~LtkRsk~aE~afl~vye~L~eaPD 101 (629)
T KOG0963|consen 71 YQSEIDNLTKRSKFAEAAFLDVYEKLIEAPD 101 (629)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhCCC
Confidence 3899999999999999999999999998765
No 13
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.38 E-value=6.3 Score=48.13 Aligned_cols=146 Identities=23% Similarity=0.253 Sum_probs=89.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHhhhccc--chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-Hhhhccccccccc
Q 008136 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS--EIKDKKVSASYEQALVDARKLIEREMERFKIC-EKETKTKAFSKEG 114 (576)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasn--eIKDK~~~a~~~~~L~E~RKlIE~~MErFK~v-EKE~KTKafSKEG 114 (576)
.++++|+++++|..+--++-+--||+..=+.. ..-|++ .|.+.++.||.-=-.+-++ |+..| |+- .++
T Consensus 819 ~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~-------~l~~~~~~ie~l~kE~e~~qe~~~K-k~~-i~~ 889 (1293)
T KOG0996|consen 819 ENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKK-------RLKELEEQIEELKKEVEELQEKAAK-KAR-IKE 889 (1293)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHH-------HHHHHHHHHHHHHHHHHHHHHhhhH-HHH-HHH
Confidence 56799999999999998888888888765552 112555 6777777776533333333 44444 221 111
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008136 115 LGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (576)
Q Consensus 115 L~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdN 194 (576)
|. .++| .--.+-.+--++-|+.++.|++.+++++-+++.+..+ ....+..++..+.+|..-|..+|.=+..|.-
T Consensus 890 lq--~~i~---~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~-s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e 963 (1293)
T KOG0996|consen 890 LQ--NKID---EIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKT-SDRNIAKAQKKLSELEREIEDTEKELDDLTE 963 (1293)
T ss_pred HH--HHHH---HhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111 1111122223677899999999999999998665433 3344667777788887777777775555544
Q ss_pred CCCC
Q 008136 195 DELS 198 (576)
Q Consensus 195 d~Ld 198 (576)
+..+
T Consensus 964 ~~~~ 967 (1293)
T KOG0996|consen 964 ELKG 967 (1293)
T ss_pred HHhh
Confidence 4433
No 14
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.31 E-value=20 Score=45.11 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHHh
Q 008136 167 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 215 (576)
Q Consensus 167 rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~ 215 (576)
.+..++..+..|+-.+..|+..-.++....|+.+++.+..+..+.-++.
T Consensus 405 el~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee 453 (1486)
T PRK04863 405 ALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQE 453 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4666677777777778888888777777778877766655555555543
No 15
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=91.12 E-value=3.4 Score=36.29 Aligned_cols=81 Identities=21% Similarity=0.318 Sum_probs=46.8
Q ss_pred HHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----ccccccccCCCCCCChh
Q 008136 50 KEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKT-----KAFSKEGLGQQPKTDPK 124 (576)
Q Consensus 50 KEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KT-----KafSKEGL~~~~K~DP~ 124 (576)
..|.++|.||+++. .|...|..||.+....+.+-.+.+. +-|-..|=..-
T Consensus 3 ~~~~~~q~l~~~~~-------------------~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv------ 57 (105)
T cd00632 3 EQLAQLQQLQQQLQ-------------------AYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLV------ 57 (105)
T ss_pred HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHh------
Confidence 35778888888865 4555556666666555555555442 45555554321
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHhhh
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSFEAELEG 155 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~ 155 (576)
+..+.++...|.+-++.|...++.++..++.
T Consensus 58 ~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~ 88 (105)
T cd00632 58 KQEKEEARTELKERLETIELRIKRLERQEED 88 (105)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666665555443
No 16
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.95 E-value=19 Score=40.11 Aligned_cols=163 Identities=25% Similarity=0.264 Sum_probs=101.1
Q ss_pred HHHHHHHhHH-hHHHHHHHhh------------cCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccc------hhhh
Q 008136 14 VLKKVQEGVD-VFDSIWNKVY------------DTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSE------IKDK 74 (576)
Q Consensus 14 ~LKKV~EGVe-~Fd~iyeKl~------------~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasne------IKDK 74 (576)
-+|++.|+++ .|..+-+-++ .-++.+-+=|+=..||=-+--|+--++-+|+-+-.+- ++++
T Consensus 174 e~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leem 253 (446)
T KOG4438|consen 174 EVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEM 253 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3788888888 5555443332 1112222334444444444445555554444443331 1111
Q ss_pred hhh----hhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--ccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhh
Q 008136 75 KVS----ASYEQALVDARKLIEREMERFKICEKETKT--KAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDS 148 (576)
Q Consensus 75 ~~~----a~~~~~L~E~RKlIE~~MErFK~vEKE~KT--KafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~ 148 (576)
+-. -+...-|.+.++..++..+.|+.||+|.+. |--|..|. +-.+.|+..-+...|-+|+.|++.
T Consensus 254 k~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~---------e~d~~Et~~v~lke~~~Le~q~e~ 324 (446)
T KOG4438|consen 254 KDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGV---------EYDSLETKVVELKEILELEDQIEL 324 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhh---------hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 100 235567888999999999999999999863 22232332 445677778888999999999999
Q ss_pred HHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 008136 149 FEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDEL 197 (576)
Q Consensus 149 ~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~L 197 (576)
.+.|++.+ -..+.+..|..-|+...|...+-++|...
T Consensus 325 ~~~e~~~l------------k~~e~~~kqL~~~~kek~~~~Qd~~~r~~ 361 (446)
T KOG4438|consen 325 NQLELEKL------------KMFENLTKQLNELKKEKESRRQDLENRKT 361 (446)
T ss_pred HHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99998775 24466777777777777777776666554
No 17
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=90.60 E-value=9.6 Score=44.21 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhHHH
Q 008136 45 EADLKKEIKKLQRYRDQ 61 (576)
Q Consensus 45 E~DLKKEIKKLQRlRDQ 61 (576)
-..|++++++|+++++.
T Consensus 193 ~~~L~~q~~~l~~~~e~ 209 (1164)
T TIGR02169 193 IDEKRQQLERLRREREK 209 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36788888888888883
No 18
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.42 E-value=7.6 Score=47.49 Aligned_cols=163 Identities=18% Similarity=0.266 Sum_probs=87.9
Q ss_pred chhhhHHHHHHHHHHhHHhHHHHHHHhhcCCC--hhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhh-hhhHHH
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN--ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKV-SASYEQ 82 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n--~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~-~a~~~~ 82 (576)
|+|.||+.|.+-..-.-...+++.+++..-+. .+-.+|+|..|-...+++.+.|-.+.-- .++.++=.. -+...+
T Consensus 444 ~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~va--esel~~L~~~~~~~~~ 521 (1293)
T KOG0996|consen 444 KCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVA--ESELDILLSRHETGLK 521 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666654332 3346667777777777777666655422 222221100 011222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcc---
Q 008136 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVK--- 159 (576)
Q Consensus 83 ~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~K--- 159 (576)
++.+....++.-|+.. +..+.++.+| ...|..++..+...+.+++.+...
T Consensus 522 ~~e~lk~~L~~~~~~~--------------------------~e~~~~l~~~-k~~l~~~k~e~~~~~k~l~~~~~e~~~ 574 (1293)
T KOG0996|consen 522 KVEELKGKLLASSESL--------------------------KEKKTELDDL-KEELPSLKQELKEKEKELPKLRKEERN 574 (1293)
T ss_pred HHHHHHHHHHHHHHHH--------------------------HHHHHHHHHH-HHhhhhHHHHHHHHHHhHHHHHHHHHH
Confidence 3333333333333222 2233334333 445666667777777777766210
Q ss_pred -cCC--CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 008136 160 -KGK--TRPPRLTHLETSITRHKAHIMKLELILRLLDNDEL 197 (576)
Q Consensus 160 -K~K--k~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~L 197 (576)
+.. +.-.|+.++...++..+..=.-|..|+|+=++|.|
T Consensus 575 ~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i 615 (1293)
T KOG0996|consen 575 LKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRI 615 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCC
Confidence 000 11246777777777777777778888888888854
No 19
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.37 E-value=0.63 Score=51.04 Aligned_cols=110 Identities=25% Similarity=0.271 Sum_probs=71.8
Q ss_pred HhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhh------cccCCCCC-----chhHH
Q 008136 102 EKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT------VKKGKTRP-----PRLTH 170 (576)
Q Consensus 102 EKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls------~KK~Kk~~-----~rl~e 170 (576)
++.-|.-.|++-+...+..+.- -.-..-=|..++..|.+|+|.++.|+|... .|+|||+- .+..-
T Consensus 209 ~~g~k~~~f~~i~~~~~~~it~----~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~ 284 (439)
T KOG2911|consen 209 SIGIKFLKFSQIPSQDASIITE----IDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKL 284 (439)
T ss_pred hcceEEEeeccCCcccccCCcc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4555556666666543222111 122334567788999999999999999883 46777642 23445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCC-----------------------CCChhhhhhhhHHHHHHHHh
Q 008136 171 LETSITRHKAHIMKLELILRLLDND-----------------------ELSPEQVNDVKDLLEDYVER 215 (576)
Q Consensus 171 Le~~ieRhk~HI~kLE~lLRlLdNd-----------------------~Ldpe~V~dIKEdIeyYVE~ 215 (576)
+++.++|.---..+||.||..+++- .+.+|.|+++-|+|..-++.
T Consensus 285 ~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~ 352 (439)
T KOG2911|consen 285 LEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDR 352 (439)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhh
Confidence 6778888888899999998877653 35667677666666555544
No 20
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=90.36 E-value=4.9 Score=40.08 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHH--------HHHHHHhhhCCCCChhhhhhhh
Q 008136 135 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMK--------LELILRLLDNDELSPEQVNDVK 206 (576)
Q Consensus 135 L~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~k--------LE~lLRlLdNd~Ldpe~V~dIK 206 (576)
....|+.++.--..++.++...-.+=-.-...||..+...+-.+--|+.. .|.|.+.|++ ++ +.
T Consensus 166 Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~~~~~~~~~e~~~~~~~~--id------~~ 237 (261)
T cd07648 166 YKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSENHSAVGQVHEEFKRQVDE--LT------VD 237 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh--CC------HH
Confidence 34555555544444554443321000001124566666666666666533 2444444443 33 34
Q ss_pred HHHHHHHHhCCC
Q 008136 207 DLLEDYVERNQD 218 (576)
Q Consensus 207 EdIeyYVE~nqd 218 (576)
.||..||+.+..
T Consensus 238 ~Di~~fv~~~gt 249 (261)
T cd07648 238 KLLRQFVESKGT 249 (261)
T ss_pred HHHHHHHHcCCC
Confidence 678888887655
No 21
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=89.81 E-value=20 Score=37.05 Aligned_cols=170 Identities=14% Similarity=0.228 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHHhh--------------------------cCC-------------------ChhhHHH
Q 008136 9 GEIDRVLKKVQEGVDVFDSIWNKVY--------------------------DTD-------------------NANQKEK 43 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iyeKl~--------------------------~a~-------------------n~nQKEK 43 (576)
--+|.++|+|+.||+.+++|..=+. ... -+.|+|.
T Consensus 5 Dqf~~~~k~~~~Gi~~l~~~~~F~keRa~IE~eYakkL~~L~Kky~~KK~~~~e~p~~t~~~s~~~~L~~~~~~a~q~e~ 84 (252)
T cd07675 5 DQFDNLDKHTQWGIDFLERYAKFVKERLEIEQNYAKQLRNLVKKYCPKRSSKDEEPRFTSCLSFYNILNELNDYAGQREV 84 (252)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999888754221 001 1567888
Q ss_pred HHHHHHHHH-----HHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-----H-Hhhhccccccc
Q 008136 44 FEADLKKEI-----KKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKI-----C-EKETKTKAFSK 112 (576)
Q Consensus 44 lE~DLKKEI-----KKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~-----v-EKE~KTKafSK 112 (576)
+..+|...| +..+.||.++|.++... + .|...+.....+||+-|. | |-|...+.|.|
T Consensus 85 ~a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~-----~-------klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~k 152 (252)
T cd07675 85 VAEEMGHRVYGELMRYSHDLKGERKMHLQEG-----R-------KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYER 152 (252)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888885543 34478888999887221 1 455555555555555432 1 22223344444
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHH-HHHHHHHHHHHHHHHHh
Q 008136 113 EGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETS-ITRHKAHIMKLELILRL 191 (576)
Q Consensus 113 EGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~-ieRhk~HI~kLE~lLRl 191 (576)
--.. ..+.+.+. +-++.+.+.-..+.|.. | ..=...|+.. -..++++..-|..|+..
T Consensus 153 a~~d--~~~tk~~~-------------eK~k~~~~~~~q~~e~a-----K--n~Y~~~L~~~N~~q~k~Y~e~mP~vfd~ 210 (252)
T cd07675 153 LDND--TNATKSDV-------------EKAKQQLNLRTHMADES-----K--NEYAAQLQNFNGEQHKHFYIVIPQIYKQ 210 (252)
T ss_pred cccC--cccCHHHH-------------HHHHHHHHHHHHHHHHH-----H--HHHHHHHHHHHHhhHhHHHHHHHHHHHH
Confidence 2111 11122222 22333444333333321 0 0001122221 12344556667788777
Q ss_pred hhCCCCChhhhhhhhHHHHHHHH
Q 008136 192 LDNDELSPEQVNDVKDLLEDYVE 214 (576)
Q Consensus 192 LdNd~Ldpe~V~dIKEdIeyYVE 214 (576)
|.. ++-..|..+++-+.-|.+
T Consensus 211 lQ~--leE~Ri~~l~e~~~~~~~ 231 (252)
T cd07675 211 LQE--MDERRTVKLSECYRGFAD 231 (252)
T ss_pred HHH--HHHHHHHHHHHHHHHHHH
Confidence 765 777777777777666653
No 22
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.80 E-value=23 Score=36.98 Aligned_cols=103 Identities=21% Similarity=0.301 Sum_probs=64.1
Q ss_pred HHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHH
Q 008136 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLI 91 (576)
Q Consensus 12 Dr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlI 91 (576)
+.-.+.+.+.++..+.++.++ ...-+.|++||..|+..-+. .+.-|+. .|...|..|
T Consensus 162 ~~D~~~L~~~~~~l~~~~~~l---------~~~~~~L~~e~~~Lk~~~~e-------~~~~D~~-------eL~~lr~eL 218 (325)
T PF08317_consen 162 QEDYAKLDKQLEQLDELLPKL---------RERKAELEEELENLKQLVEE-------IESCDQE-------ELEALRQEL 218 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhh-------hhhcCHH-------HHHHHHHHH
Confidence 344455555666666666655 23445677777777765444 3444666 777777777
Q ss_pred HHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhh
Q 008136 92 EREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (576)
Q Consensus 92 E~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls 157 (576)
...+.......++ -.+...-..++...|++++.++..++++|..+.
T Consensus 219 ~~~~~~i~~~k~~--------------------l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 219 AEQKEEIEAKKKE--------------------LAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666554222111 123344556778888999999999998888874
No 23
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.76 E-value=20 Score=40.20 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhhCCCCChhhhh----hhhHHHHHHHH
Q 008136 180 AHIMKLELILRLLDNDELSPEQVN----DVKDLLEDYVE 214 (576)
Q Consensus 180 ~HI~kLE~lLRlLdNd~Ldpe~V~----dIKEdIeyYVE 214 (576)
..-.+++.|.+.|+.|.|+.+.|+ ++.++++++.+
T Consensus 452 ~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~ 490 (569)
T PRK04778 452 EVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEE 490 (569)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 334556667788888999988777 35555555543
No 24
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=89.45 E-value=4.1 Score=49.03 Aligned_cols=10 Identities=10% Similarity=0.215 Sum_probs=4.0
Q ss_pred HHHHHhhhcc
Q 008136 59 RDQIKTWIQS 68 (576)
Q Consensus 59 RDQIKtWlas 68 (576)
+.++++|...
T Consensus 813 ~~~~~~~~~~ 822 (1163)
T COG1196 813 ERELESLEQR 822 (1163)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 25
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=88.94 E-value=8.7 Score=40.80 Aligned_cols=111 Identities=23% Similarity=0.320 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCC
Q 008136 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120 (576)
Q Consensus 41 KEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K 120 (576)
.-|+..-|.|-+|.|||+= ..|..||-+|+++|+-=
T Consensus 148 ~KKlg~nIEKSvKDLqRct----------------------vSL~RYr~~lkee~d~S---------------------- 183 (302)
T PF07139_consen 148 NKKLGPNIEKSVKDLQRCT----------------------VSLTRYRVVLKEEMDSS---------------------- 183 (302)
T ss_pred ccccCccHHHHHHHHHHHH----------------------HHHHhhhhHHHHHHHHH----------------------
Confidence 4477788999999999982 27999999999999432
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCCh
Q 008136 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN-DELSP 199 (576)
Q Consensus 121 ~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdN-d~Ldp 199 (576)
.+.=..+.+=|..||-+ .--.|=+|+++. -++.++-...+..+-|.|-|+-+- ..+..
T Consensus 184 ----~k~ik~~F~~l~~cL~d---REvaLl~EmdkV--------------K~EAmeiL~aRqkkAeeLkrltd~A~~MsE 242 (302)
T PF07139_consen 184 ----IKKIKQTFAELQSCLMD---REVALLAEMDKV--------------KAEAMEILDARQKKAEELKRLTDRASQMSE 242 (302)
T ss_pred ----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 22222233333333321 222334454443 133445555556666666666553 34889
Q ss_pred hhhhhhhHHHHHHHHhC
Q 008136 200 EQVNDVKDLLEDYVERN 216 (576)
Q Consensus 200 e~V~dIKEdIeyYVE~n 216 (576)
+||-+|+-||.+||..-
T Consensus 243 ~Ql~ELRadIK~fvs~r 259 (302)
T PF07139_consen 243 EQLAELRADIKHFVSER 259 (302)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999999999653
No 26
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.92 E-value=10 Score=44.16 Aligned_cols=152 Identities=16% Similarity=0.227 Sum_probs=72.5
Q ss_pred HHHHHHHhHHhHHHHH-HHhhcCCChhh-H-HHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHH
Q 008136 14 VLKKVQEGVDVFDSIW-NKVYDTDNANQ-K-EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKL 90 (576)
Q Consensus 14 ~LKKV~EGVe~Fd~iy-eKl~~a~n~nQ-K-EKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKl 90 (576)
||.=+.+.++.|-+-| +|++.+-..=| | .-|....++.+++|+.+++.++.--...+ .|.| .
T Consensus 537 ~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae------------~Lae---R 601 (717)
T PF10168_consen 537 CLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAE------------KLAE---R 601 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH---H
Confidence 5666667788887766 66554322222 1 12344455566677777776665432211 3333 3
Q ss_pred HHHHHHHHHHHHhhhcccccc-ccccCCCCCCChhHHH-HHH------HHHHHHHHHHHHHHhHhhHHHHhhhhhcccCC
Q 008136 91 IEREMERFKICEKETKTKAFS-KEGLGQQPKTDPKEKA-KSE------TRDWLNNLVSELESQIDSFEAELEGLTVKKGK 162 (576)
Q Consensus 91 IE~~MErFK~vEKE~KTKafS-KEGL~~~~K~DP~Eke-K~E------~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~K 162 (576)
||+..|+-+.+++-++.---. +.. .+.+.-+|++ +.| ..+-|...|++++++++..+..+++ .++.+
T Consensus 602 ~e~a~d~Qe~L~~R~~~vl~~l~~~---~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~--~~~~~ 676 (717)
T PF10168_consen 602 YEEAKDKQEKLMKRVDRVLQLLNSQ---LPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIES--QKSPK 676 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccc
Confidence 555555555555443321100 110 1112333332 111 1233566666666666666665552 22222
Q ss_pred CC-----CchhHHHHHHHHHHHHHHHHH
Q 008136 163 TR-----PPRLTHLETSITRHKAHIMKL 185 (576)
Q Consensus 163 k~-----~~rl~eLe~~ieRhk~HI~kL 185 (576)
++ ......+...|..+--||+.|
T Consensus 677 ~~s~~L~~~Q~~~I~~iL~~~~~~I~~~ 704 (717)
T PF10168_consen 677 KKSIVLSESQKRTIKEILKQQGEEIDEL 704 (717)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22 123456666666666666655
No 27
>PRK03918 chromosome segregation protein; Provisional
Probab=88.75 E-value=24 Score=40.42 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhh
Q 008136 126 KAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (576)
Q Consensus 126 keK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls 157 (576)
..+.++..-+..-|.+|+.++..++.+++.+.
T Consensus 448 ~~~~el~~~~~~ei~~l~~~~~~l~~~~~~l~ 479 (880)
T PRK03918 448 EHRKELLEEYTAELKRIEKELKEIEEKERKLR 479 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777776663
No 28
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=88.71 E-value=20 Score=35.23 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHHhC
Q 008136 178 HKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERN 216 (576)
Q Consensus 178 hk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~n 216 (576)
+.|+...|-.|+..|.. ++-+.|..+++-+.-|.+..
T Consensus 196 ~~~y~~~~p~~~~~~q~--le~~ri~~~k~~l~~~~~~~ 232 (251)
T cd07653 196 RQHYSTDLPQIFDKLQE--LDEKRINRTVELLLQAAEIE 232 (251)
T ss_pred HHHHHhhhHHHHHHHHH--HhHHHHHHHHHHHHHHHHHH
Confidence 45667788888887776 77899999999999998663
No 29
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=87.92 E-value=10 Score=33.79 Aligned_cols=82 Identities=15% Similarity=0.262 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----ccccccccCCCCCC
Q 008136 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKT-----KAFSKEGLGQQPKT 121 (576)
Q Consensus 47 DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KT-----KafSKEGL~~~~K~ 121 (576)
.+...|.++|++|.+|. .|...|..+|.++...+.+.++.+. +-|--.|=..-
T Consensus 4 ~~q~~~~~~q~~q~~~~-------------------~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv--- 61 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQ-------------------AVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLV--- 61 (110)
T ss_pred HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhh---
Confidence 45678999999999986 4555666666666666666665542 33433332221
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHh
Q 008136 122 DPKEKAKSETRDWLNNLVSELESQIDSFEAEL 153 (576)
Q Consensus 122 DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEi 153 (576)
++.+.++...|++-|+.|+..|+.++..+
T Consensus 62 ---~~~~~e~~~~l~~r~e~ie~~i~~lek~~ 90 (110)
T TIGR02338 62 ---KTDKEEAIQELKEKKETLELRVKTLQRQE 90 (110)
T ss_pred ---eecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444554445554444444444444443
No 30
>PHA00425 DNA packaging protein, small subunit
Probab=87.80 E-value=1.5 Score=38.92 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=40.7
Q ss_pred HHHhHhhHHHHhhhhhcccC----CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHHhCC
Q 008136 142 LESQIDSFEAELEGLTVKKG----KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQ 217 (576)
Q Consensus 142 L~~QiE~~EaEiE~Ls~KK~----Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~nq 217 (576)
|.+=+|.+..|+.++-..-- |+.+.=-..+...++||||||.||. .|..-+-++-+.++.|-+--.
T Consensus 6 L~k~LemlDTE~a~~mL~DL~ddekRtPQLYnAIgKlL~RHkF~isKl~----------pD~~iLg~la~~l~ey~~~~g 75 (88)
T PHA00425 6 LIKFLEMLDTEMAQRMLADLKDDEKRTPQLYNAIGKLLDRHKFQISKLQ----------PDENILGGLAAALEEYKEKVG 75 (88)
T ss_pred HHHHHHHHhHHHHHHHHHHhcCccccChHHHHHHHHHHHHhcccccccC----------CcHHHHHHHHHHHHHHHHhcC
Confidence 33445556666655422211 2223335678899999999999982 333344567777888877544
Q ss_pred CC
Q 008136 218 DD 219 (576)
Q Consensus 218 dD 219 (576)
.|
T Consensus 76 ~d 77 (88)
T PHA00425 76 AD 77 (88)
T ss_pred CC
Confidence 43
No 31
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=87.79 E-value=8.4 Score=46.66 Aligned_cols=62 Identities=21% Similarity=0.283 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCC--C----CCchhHHHHHHHHHHHHHHHHH
Q 008136 124 KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGK--T----RPPRLTHLETSITRHKAHIMKL 185 (576)
Q Consensus 124 ~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~K--k----~~~rl~eLe~~ieRhk~HI~kL 185 (576)
...+.+.-..||+.-|+.|+.|+..+..|++.+..+-+. . -..++..|...|+...||+..|
T Consensus 395 ~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 395 ELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDL 462 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667788888888888888888888777422111 1 1234566666677777776665
No 32
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=87.65 E-value=3.7 Score=51.90 Aligned_cols=103 Identities=24% Similarity=0.330 Sum_probs=66.9
Q ss_pred CccccchhhhHHHHHHHHHHhHHhHHHH----HHHhhcCCChhhHHHH------HHHHHHHHHHHHHhHHHHHhhhcc--
Q 008136 1 MGASRKLQGEIDRVLKKVQEGVDVFDSI----WNKVYDTDNANQKEKF------EADLKKEIKKLQRYRDQIKTWIQS-- 68 (576)
Q Consensus 1 Maa~RKLQ~EIDr~LKKV~EGVe~Fd~i----yeKl~~a~n~nQKEKl------E~DLKKEIKKLQRlRDQIKtWlas-- 68 (576)
|+...||+-|.|++.++.++-++.|.++ |+|+.+ ...+.|+++ =+||++++..|| .+||.-+..
T Consensus 1277 ~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~-ei~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld~l~ 1352 (1822)
T KOG4674|consen 1277 VAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKS-EISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLDELN 1352 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4566789999999999999999887654 667655 445555554 468888888888 677766543
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH--Hhhhccccc
Q 008136 69 SEIKDKKVSASYEQALVDARKLIEREMERFKIC--EKETKTKAF 110 (576)
Q Consensus 69 neIKDK~~~a~~~~~L~E~RKlIE~~MErFK~v--EKE~KTKaf 110 (576)
++++++. .-...|.+.-...++..+-|.+= |...++++.
T Consensus 1353 ~e~~~lt---~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~~~ 1393 (1822)
T KOG4674|consen 1353 NEKANLT---KELEQLEDLKTRLAAALSEKNAQELELSDKKKAH 1393 (1822)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555444 33344555556666666655443 555555544
No 33
>PTZ00464 SNF-7-like protein; Provisional
Probab=87.29 E-value=2.6 Score=42.15 Aligned_cols=90 Identities=14% Similarity=0.274 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHhhhhh--cccCCC------CC------chhHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 008136 129 SETRDWLNNLVSELESQIDSFEAELEGLT--VKKGKT------RP------PRLTHLETSITRHKAHIMKLELILRLLD- 193 (576)
Q Consensus 129 ~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls--~KK~Kk------~~------~rl~eLe~~ieRhk~HI~kLE~lLRlLd- 193 (576)
.++..=|.+-++.|.++|+.++.|++... .+++|. +. .+..-++..+++..-++.+||.++-.|+
T Consensus 17 ~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~ 96 (211)
T PTZ00464 17 EDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTES 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788889999999999999887773 222221 10 0122233334444444444443332222
Q ss_pred ---------------------CCCCChhhhhhhhHHHHHHHHhCCC
Q 008136 194 ---------------------NDELSPEQVNDVKDLLEDYVERNQD 218 (576)
Q Consensus 194 ---------------------Nd~Ldpe~V~dIKEdIeyYVE~nqd 218 (576)
|..++.|+|++|.|+|+..++..++
T Consensus 97 a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~E 142 (211)
T PTZ00464 97 VKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQE 142 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999876544
No 34
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=87.06 E-value=12 Score=37.87 Aligned_cols=33 Identities=12% Similarity=0.282 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHHh
Q 008136 181 HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 215 (576)
Q Consensus 181 HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~ 215 (576)
....+..++..+.. ++-+.|.-+|+-+--|-..
T Consensus 205 y~~~m~~~~~~~Q~--lEe~Ri~~lk~~l~~y~~~ 237 (258)
T cd07655 205 YMEDMEQVFDKCQE--FEEKRLDFFKEILLSYHRH 237 (258)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 34446666666655 7788888888888888755
No 35
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=86.97 E-value=15 Score=44.53 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008136 168 LTHLETSITRHKAHIMKLELILRLLDN 194 (576)
Q Consensus 168 l~eLe~~ieRhk~HI~kLE~lLRlLdN 194 (576)
+..++..+..++.+...|+.-|+.+..
T Consensus 872 ~~~l~~~l~~~~~~~~~l~~~l~~~~~ 898 (1163)
T COG1196 872 KEELEDELKELEEEKEELEEELRELES 898 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666554
No 36
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.74 E-value=5.7 Score=45.24 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhh
Q 008136 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDS 148 (576)
Q Consensus 83 ~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~ 148 (576)
.|-+-++.++...-+|++....||-|-=.=+|.... +--+-.+|++-++=|+..+|+|+.|||.
T Consensus 263 slre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~--l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 263 SLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEM--LKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566668888899999999998887777776532 2334567888888899999999988654
No 37
>PRK02224 chromosome segregation protein; Provisional
Probab=86.66 E-value=8.6 Score=44.21 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhHhhHH
Q 008136 135 LNNLVSELESQIDSFE 150 (576)
Q Consensus 135 L~~~IdeL~~QiE~~E 150 (576)
+.+-+.+++.+++.++
T Consensus 625 ~~~~l~~~r~~i~~l~ 640 (880)
T PRK02224 625 RRERLAEKRERKRELE 640 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555553
No 38
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=86.28 E-value=8.6 Score=34.45 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhHhhHHHHhhh
Q 008136 132 RDWLNNLVSELESQIDSFEAELEG 155 (576)
Q Consensus 132 ~~WL~~~IdeL~~QiE~~EaEiE~ 155 (576)
...|...++.|+..-+.+...++.
T Consensus 74 ~~~i~~~~~~l~~~w~~l~~~~~~ 97 (213)
T cd00176 74 AEEIQERLEELNQRWEELRELAEE 97 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777666666665543
No 39
>PRK11637 AmiB activator; Provisional
Probab=85.95 E-value=35 Score=36.61 Aligned_cols=14 Identities=7% Similarity=0.342 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 008136 83 ALVDARKLIEREME 96 (576)
Q Consensus 83 ~L~E~RKlIE~~ME 96 (576)
.|.+.++.+..+|.
T Consensus 118 ~l~~~~~~l~~rlr 131 (428)
T PRK11637 118 QQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 40
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=85.87 E-value=18 Score=31.02 Aligned_cols=102 Identities=14% Similarity=0.207 Sum_probs=62.6
Q ss_pred hhhhHHHHHHHHHHhHHhHHHHHHHhhcCCCh--hhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhh---hhhhhHH
Q 008136 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNA--NQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDK---KVSASYE 81 (576)
Q Consensus 7 LQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~--nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK---~~~a~~~ 81 (576)
+-.+|...+.+|+.-|..++..+.++..+... .-+++++.....=-+.-+..+..||.--..++...+ .+...-.
T Consensus 9 ~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~ 88 (117)
T smart00503 9 KVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRK 88 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHH
Confidence 45789999999999999999999999887663 346777664333223333455555543322211000 0000111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008136 82 QALVDARKLIEREMERFKICEKETKTK 108 (576)
Q Consensus 82 ~~L~E~RKlIE~~MErFK~vEKE~KTK 108 (576)
....-..+..-..|.+|..+++..+.+
T Consensus 89 ~q~~~L~~~f~~~m~~fq~~Q~~~~~~ 115 (117)
T smart00503 89 AQTEKLRKKFKEVMNEFQRLQRKYRER 115 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444666778899999999987754
No 41
>PRK02224 chromosome segregation protein; Provisional
Probab=85.79 E-value=55 Score=37.87 Aligned_cols=26 Identities=8% Similarity=-0.022 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008136 168 LTHLETSITRHKAHIMKLELILRLLD 193 (576)
Q Consensus 168 l~eLe~~ieRhk~HI~kLE~lLRlLd 193 (576)
++++...+..++..+..++..|+.+.
T Consensus 421 ~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 421 RDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444
No 42
>PRK01156 chromosome segregation protein; Provisional
Probab=85.68 E-value=55 Score=38.13 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=32.2
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhh
Q 008136 112 KEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (576)
Q Consensus 112 KEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls 157 (576)
.+|..........+.-+.+...++..-|.+|+.+++.++.+++.+.
T Consensus 451 ~~~~Cp~c~~~~~~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~ 496 (895)
T PRK01156 451 GQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDID 496 (895)
T ss_pred cCCCCCCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566544333333556677888888888888888888888887664
No 43
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=85.65 E-value=35 Score=36.59 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=16.8
Q ss_pred HHHHHHHHHhHhhHHHHhhhh
Q 008136 136 NNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 136 ~~~IdeL~~QiE~~EaEiE~L 156 (576)
-..++.++.|++++|.|+-++
T Consensus 132 V~qLEk~~~q~~qLe~d~qs~ 152 (319)
T PF09789_consen 132 VEQLEKLREQIEQLERDLQSL 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344589999999999998776
No 44
>PF09745 DUF2040: Coiled-coil domain-containing protein 55 (DUF2040); InterPro: IPR018612 This entry represents a conserved domain of approximately 130 residues of proteins conserved from fungi to humans. Some proteins containing this domain are described as coiled-coil domain-containing protein 55, but the function is unknown.
Probab=85.53 E-value=4.8 Score=37.65 Aligned_cols=97 Identities=27% Similarity=0.407 Sum_probs=60.7
Q ss_pred hhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhh-----------HHHHHHHH------------HHHHHHHHHhHHHHH
Q 008136 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ-----------KEKFEADL------------KKEIKKLQRYRDQIK 63 (576)
Q Consensus 7 LQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQ-----------KEKlE~DL------------KKEIKKLQRlRDQIK 63 (576)
.+.++.+.|. .+--|=.||.||+-|+.....+. |-||=+.| ..+=+||||=|+.=
T Consensus 3 ~~~~~~~A~~-~DptvfdYD~vYD~m~~~~~~~~~~~~~~~~~~rkpKYi~~Ll~~A~~Rk~E~~~~~ErklqKERe~E- 80 (127)
T PF09745_consen 3 AKKEAQKALE-EDPTVFDYDEVYDDMKAKKEEKKQAKQQEDKEKRKPKYISNLLKAAKRRKRERERAEERKLQKEREAE- 80 (127)
T ss_pred hHHHHHHHhc-cCChHhhHHHHHHHHhhhhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 3445555554 45567788999999985544322 22333322 22335666666643
Q ss_pred hhhcccch--hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008136 64 TWIQSSEI--KDKKVSASYEQALVDARKLIEREMERFKICEKETKTKA 109 (576)
Q Consensus 64 tWlasneI--KDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKa 109 (576)
+.+. |++=|+..|-.+|.|.|+.-|..-++=...++..+||.
T Consensus 81 ----g~~f~dkE~FVT~AYKkkleE~k~~eeee~~~e~~e~~~~~~k~ 124 (127)
T PF09745_consen 81 ----GDEFADKEKFVTSAYKKKLEERKKWEEEEKRREELEEKNDVTKQ 124 (127)
T ss_pred ----ccccccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 3333 34557899999999999999987777666666666654
No 45
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=85.34 E-value=21 Score=43.51 Aligned_cols=89 Identities=19% Similarity=0.274 Sum_probs=44.9
Q ss_pred HHhHHHHHHHhhcCCC-hhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhh-------hh---hhhhHHHHHHHHHHH
Q 008136 22 VDVFDSIWNKVYDTDN-ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKD-------KK---VSASYEQALVDARKL 90 (576)
Q Consensus 22 Ve~Fd~iyeKl~~a~n-~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKD-------K~---~~a~~~~~L~E~RKl 90 (576)
-+.|-++++.+..+.. -.++++-=.-|||+||-++-.+++|-.- .++++ |- .+..+...|.++...
T Consensus 213 ~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~---e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~ 289 (1074)
T KOG0250|consen 213 TESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQL---EDLKENLEQLKAKMAWAWVNEVERQLNNQEEE 289 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544432 3356666667788888777777744321 11111 10 012233456666555
Q ss_pred HHHHHHHHHHHHhhhcccccccc
Q 008136 91 IEREMERFKICEKETKTKAFSKE 113 (576)
Q Consensus 91 IE~~MErFK~vEKE~KTKafSKE 113 (576)
|-..=|+-+.|...++-+.+-.+
T Consensus 290 i~~~qek~~~l~~ki~~~~~k~~ 312 (1074)
T KOG0250|consen 290 IKKKQEKVDTLQEKIEEKQGKIE 312 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666666665444333
No 46
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.16 E-value=26 Score=38.85 Aligned_cols=129 Identities=21% Similarity=0.235 Sum_probs=69.7
Q ss_pred chhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHH
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALV 85 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~ 85 (576)
..|+||.++-++|.+--+ ++.|||.+||.-=+.+-+++.||+.-....+-.+|. ++.....|.
T Consensus 42 q~q~ei~~~~~~i~~~~~----------------~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~-I~~~~~~l~ 104 (420)
T COG4942 42 QIQKEIAALEKKIREQQD----------------QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQ-IADLNARLN 104 (420)
T ss_pred HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHH
Confidence 345566655555554322 355677666665555566666766655544433333 111111111
Q ss_pred HHHHHHHH-HHHHHHHHHhhhccccccccccCCC--CCCChhH-HHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhh
Q 008136 86 DARKLIER-EMERFKICEKETKTKAFSKEGLGQQ--PKTDPKE-KAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (576)
Q Consensus 86 E~RKlIE~-~MErFK~vEKE~KTKafSKEGL~~~--~K~DP~E-keK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls 157 (576)
.+|. +-|++-.+.+---.=.+ -|.... -.+.|++ .......-|+..+.-++..+|+.+++....|.
T Consensus 105 ----~l~~q~r~qr~~La~~L~A~~r--~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~ 174 (420)
T COG4942 105 ----ALEVQEREQRRRLAEQLAALQR--SGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLA 174 (420)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHh--ccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 1111 13555555544433223 333322 2455655 33456777888888888899998888887774
No 47
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=84.96 E-value=22 Score=30.90 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=53.4
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 008136 34 DTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKE 113 (576)
Q Consensus 34 ~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKE 113 (576)
...+...+++++.++....+++.+.-+.++....+.+ +|.....+...+.++++..+.-|+-.+.=..+ ....+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~a~~~~~~ 146 (181)
T PF12729_consen 70 LATDPEERQEIEKEIDEARAEIDEALEEYEKLILSPE--EKQLLEEFKEAWKAYRKLRDQVIELAKSGDND-EARAILNG 146 (181)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHH
Confidence 3455566677777777666666666666666555444 23323334444444444444433332221111 11111111
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHh
Q 008136 114 GLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAEL 153 (576)
Q Consensus 114 GL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEi 153 (576)
.+ .....++.+.|...++.-.++.+..-.+.
T Consensus 147 ~~---------~~~~~~~~~~l~~l~~~~~~~a~~~~~~~ 177 (181)
T PF12729_consen 147 EA---------RPAFDELRDALDELIEYNNQQAEQAYAEA 177 (181)
T ss_pred hH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 23445566666777777777766665554
No 48
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=84.52 E-value=45 Score=39.17 Aligned_cols=97 Identities=27% Similarity=0.316 Sum_probs=64.7
Q ss_pred HHHHHHHHHHH---HHHHHHHHHhHhhHHHHhhhhh-cccCCCCCchhHHHHHHHHHHHHHHHHH-HHHHHhh-hCCCCC
Q 008136 125 EKAKSETRDWL---NNLVSELESQIDSFEAELEGLT-VKKGKTRPPRLTHLETSITRHKAHIMKL-ELILRLL-DNDELS 198 (576)
Q Consensus 125 EkeK~E~~~WL---~~~IdeL~~QiE~~EaEiE~Ls-~KK~Kk~~~rl~eLe~~ieRhk~HI~kL-E~lLRlL-dNd~Ld 198 (576)
|+++.|+.+=+ .+.|++++ |+---|-+-|.|+ .+|.|.....+..|++..+-....+.+| +.+.+-| -.++--
T Consensus 194 Ekeq~e~E~K~R~se~l~qevn-~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~ 272 (861)
T KOG1899|consen 194 EKEQNETEKKLRLSENLMQEVN-QSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHK 272 (861)
T ss_pred HHHhhhHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccch
Confidence 45555555444 34566666 6655566666775 5777776677888888777777777665 4444444 344444
Q ss_pred hhhhhhhhHHHHHHHHhCCC--Cccc
Q 008136 199 PEQVNDVKDLLEDYVERNQD--DFEE 222 (576)
Q Consensus 199 pe~V~dIKEdIeyYVE~nqd--DF~E 222 (576)
.++++.+|-.+|-.+..|.+ +|+|
T Consensus 273 ~~rd~~lk~a~eslm~ane~kdr~ie 298 (861)
T KOG1899|consen 273 SLRDNTLKNALESLMRANEQKDRFIE 298 (861)
T ss_pred hhHHHHHHHHHHHHHhhchhhhhHHH
Confidence 77888999999999998865 5543
No 49
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=83.95 E-value=4.5 Score=45.97 Aligned_cols=74 Identities=7% Similarity=-0.155 Sum_probs=64.4
Q ss_pred ccccchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhh
Q 008136 2 GASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVS 77 (576)
Q Consensus 2 aa~RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~ 77 (576)
...|++.-+++.|..++..++..|+++-.+..+.....++...|.+.. ++.|++.+++++-||...++.++.++
T Consensus 146 ~e~~~erh~~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe~nqd--pdF~e~e~iYd~l~le~~e~~~~~~~ 219 (575)
T KOG2150|consen 146 LERFIERHRWHQQKLELILRLLDNDELDPEAVNKVQDDITYYVESNQD--PDFLEDETIYDDLNLEELEASMDAVA 219 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCHHHHhhhhHHHHHHHHhccC--chhhhhhHHhhccCchhhhhhHhhhc
Confidence 345677778889999999999999999888888888888999999888 99999999999999999999988743
No 50
>PRK09343 prefoldin subunit beta; Provisional
Probab=83.94 E-value=22 Score=32.51 Aligned_cols=44 Identities=16% Similarity=0.382 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008136 44 FEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETK 106 (576)
Q Consensus 44 lE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~K 106 (576)
+-..|-.+|.+||.++++|+ .+...|..+|.++-..+.+-+|.+
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~-------------------~~~~q~~~le~q~~e~~~~~~EL~ 48 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLE-------------------RLLQQKSQIDLELREINKALEELE 48 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677889999999999986 455556666666655555555543
No 51
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=83.81 E-value=16 Score=47.05 Aligned_cols=47 Identities=23% Similarity=0.363 Sum_probs=40.3
Q ss_pred cccchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhh--HHHHHHHHH
Q 008136 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ--KEKFEADLK 49 (576)
Q Consensus 3 a~RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQ--KEKlE~DLK 49 (576)
+.|+|+.|.+.+.+++.|-.+.++.++.++..+....+ |-|||.++.
T Consensus 1323 ~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~ 1371 (1930)
T KOG0161|consen 1323 ALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVL 1371 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999987766554 778887765
No 52
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=83.68 E-value=10 Score=37.07 Aligned_cols=84 Identities=24% Similarity=0.362 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhh
Q 008136 127 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRP-PRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDV 205 (576)
Q Consensus 127 eK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~-~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dI 205 (576)
.+....+=|..-|+.++..++.++.+++.+ ++++... +| ..+-..++..+-.+..|+.=|.. -...||+.|..+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~--~~~r~~~~eR-~~~l~~l~~l~~~~~~l~~el~~--~~~~Dp~~i~~~ 140 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEA--KKGREESEER-EELLEELEELKKELKELKKELEK--YSENDPEKIEKL 140 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcccccHHH-HHHHHHHHHHHHHHHHHHHHHHH--HHhcCHHHHHHH
Confidence 444455555666666666666666666665 4444443 33 22223333333344444433332 233699999999
Q ss_pred hHHHHHHHHh
Q 008136 206 KDLLEDYVER 215 (576)
Q Consensus 206 KEdIeyYVE~ 215 (576)
++++..+.+.
T Consensus 141 ~~~~~~~~~~ 150 (188)
T PF03962_consen 141 KEEIKIAKEA 150 (188)
T ss_pred HHHHHHHHHH
Confidence 9988877755
No 53
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=83.58 E-value=45 Score=39.32 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHhhh
Q 008136 130 ETRDWLNNLVSELESQIDSFEAELEG 155 (576)
Q Consensus 130 E~~~WL~~~IdeL~~QiE~~EaEiE~ 155 (576)
....|+.+.+.++..+++.+++++..
T Consensus 647 ~~~~~~~~~l~~~~~~~~~~~~~~~~ 672 (908)
T COG0419 647 ELEELLQAALEELEEKVEELEAEIRR 672 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566777777777777663
No 54
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.23 E-value=89 Score=38.57 Aligned_cols=46 Identities=7% Similarity=0.130 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCC--CCChhhhhhhhHHHHHH
Q 008136 167 RLTHLETSITRHKAHIMKLELILRLLDND--ELSPEQVNDVKDLLEDY 212 (576)
Q Consensus 167 rl~eLe~~ieRhk~HI~kLE~lLRlLdNd--~Ldpe~V~dIKEdIeyY 212 (576)
+..+++..+...+.-+..|..+...+..- .--+.+|.+++..|.-|
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~ 982 (1311)
T TIGR00606 935 SNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTV 982 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555566666666666666655555421 11355566666666554
No 55
>PRK03918 chromosome segregation protein; Provisional
Probab=83.11 E-value=43 Score=38.54 Aligned_cols=12 Identities=17% Similarity=0.711 Sum_probs=6.6
Q ss_pred hHHhHHHHHHHh
Q 008136 21 GVDVFDSIWNKV 32 (576)
Q Consensus 21 GVe~Fd~iyeKl 32 (576)
|++.|+.+|+++
T Consensus 156 ~~~~~~~~~~~~ 167 (880)
T PRK03918 156 GLDDYENAYKNL 167 (880)
T ss_pred CCHHHHHHHHHH
Confidence 455555555544
No 56
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.74 E-value=91 Score=38.41 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=33.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-----------hhhhhhhhHHHHHHHHhCCC
Q 008136 166 PRLTHLETSITRHKAHIMKLELILRLLDNDELS-----------PEQVNDVKDLLEDYVERNQD 218 (576)
Q Consensus 166 ~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ld-----------pe~V~dIKEdIeyYVE~nqd 218 (576)
.+-......++-.+-||.+|+.-|+.|..+.=- .+.+..+++.+++.......
T Consensus 441 ~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~ 504 (1174)
T KOG0933|consen 441 AEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKDELDRLLARLAN 504 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 444455677888888999999888888764321 23344455555555554433
No 57
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=82.57 E-value=32 Score=44.48 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhHhhHHHHhhhh
Q 008136 135 LNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 135 L~~~IdeL~~QiE~~EaEiE~L 156 (576)
++..+++|..|....|.|+-.+
T Consensus 1060 ~~~~~~el~~~l~kke~El~~l 1081 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQL 1081 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666665555555554
No 58
>PRK09039 hypothetical protein; Validated
Probab=82.52 E-value=45 Score=35.49 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 131 TRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 131 ~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
....|+.-|+.|+.|+..+|++|+.+
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888887766
No 59
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=82.29 E-value=58 Score=32.91 Aligned_cols=41 Identities=32% Similarity=0.447 Sum_probs=25.4
Q ss_pred cccchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHH
Q 008136 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ 56 (576)
Q Consensus 3 a~RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQ 56 (576)
++|||+.|. +|+.-.|+.|++.-.++ .+.+ .||++++|-||
T Consensus 16 ~n~~L~~en----~kL~~~ve~~ee~na~L--------~~e~-~~L~~q~~s~Q 56 (193)
T PF14662_consen 16 NNQKLADEN----AKLQRSVETAEEGNAQL--------AEEI-TDLRKQLKSLQ 56 (193)
T ss_pred HhHHHHHHH----HHHHHHHHHHHHHHHHH--------HHHH-HHHHHHHHHHH
Confidence 457777775 45566677777766555 2233 25666666665
No 60
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=82.24 E-value=7.3 Score=38.76 Aligned_cols=25 Identities=16% Similarity=0.472 Sum_probs=20.0
Q ss_pred CCCCChhhhhhhhHHHHHHHHhCCC
Q 008136 194 NDELSPEQVNDVKDLLEDYVERNQD 218 (576)
Q Consensus 194 Nd~Ldpe~V~dIKEdIeyYVE~nqd 218 (576)
|..++.|+|++|.|+|+..++-.++
T Consensus 124 ~k~~~idkVd~lmDei~E~~e~~~E 148 (191)
T PTZ00446 124 NNEINTQKVEKIIDTIQENKDIQEE 148 (191)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999988876543
No 61
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=82.11 E-value=88 Score=36.36 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008136 169 THLETSITRHKAHIMKL 185 (576)
Q Consensus 169 ~eLe~~ieRhk~HI~kL 185 (576)
.+++..++..+-.+..|
T Consensus 436 ~~~~~~~~~~~~~~~~l 452 (1179)
T TIGR02168 436 KELQAELEELEEELEEL 452 (1179)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344443333333333
No 62
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=82.08 E-value=57 Score=32.50 Aligned_cols=33 Identities=6% Similarity=0.040 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHHh
Q 008136 181 HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 215 (576)
Q Consensus 181 HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~ 215 (576)
+...+..++..+ -.++-+.|.-+|+.|--|-..
T Consensus 190 ~~~~~~~~~~~~--Q~lEe~Ri~~lk~~l~~y~n~ 222 (239)
T cd07647 190 WESEHATACQVF--QNMEEERIKFLRNALWVHCNL 222 (239)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhH
Confidence 444555555555 347788888888888888644
No 63
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=81.98 E-value=5 Score=47.39 Aligned_cols=138 Identities=20% Similarity=0.304 Sum_probs=93.7
Q ss_pred HHHHHHHhHHHHHhhhcccc-hh-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccccccCCCCCCChhHHH
Q 008136 51 EIKKLQRYRDQIKTWIQSSE-IK-DKKVSASYEQALVDARKLIEREMERFKICEKETKTK-AFSKEGLGQQPKTDPKEKA 127 (576)
Q Consensus 51 EIKKLQRlRDQIKtWlasne-IK-DK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTK-afSKEGL~~~~K~DP~Eke 127 (576)
...|+||+-.-+..++..-= +. |.. -+-....+...|--||..+-.|-.-|...... .++||||.+-.|+-|.---
T Consensus 807 DvQK~QRlh~~FsqFvg~HLavAF~~d-PE~~~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~l 885 (1480)
T COG3096 807 DVQKTQRLHQAFSRFIGSHLAVAFEAD-PEAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNL 885 (1480)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 35789999999988876531 11 111 01222367888999999999998877766543 5778888766565553211
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhH
Q 008136 128 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKD 207 (576)
Q Consensus 128 K~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKE 207 (576)
=+.+-|.+-|++++.+++..+ +.+.+|..|.-.+.+||-|...|+. ||++.+.+|+
T Consensus 886 --l~dE~L~dRveE~~E~L~~a~-------------------e~~~fI~qhG~tls~LEpia~~Lqs---DPe~~e~L~~ 941 (1480)
T COG3096 886 --LADESLADRVEEIRERLDEAQ-------------------EAARFIQQHGNTLSKLEPIASVLQS---DPEQFEQLKE 941 (1480)
T ss_pred --ccchhHHHHHHHHHHHHHHHH-------------------HHHHHHHHhcchHHhhhhHHHHHhC---CHHHHHHHHH
Confidence 112234455555555555433 4478999999999999999999986 7999999998
Q ss_pred HHHHHH
Q 008136 208 LLEDYV 213 (576)
Q Consensus 208 dIeyYV 213 (576)
+...-+
T Consensus 942 ~y~qA~ 947 (1480)
T COG3096 942 DYAQAQ 947 (1480)
T ss_pred HHHHHH
Confidence 765544
No 64
>PF13166 AAA_13: AAA domain
Probab=81.97 E-value=57 Score=36.73 Aligned_cols=27 Identities=33% Similarity=0.451 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 130 ETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 130 E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
...+=++..|++.+..++.++.+.+.+
T Consensus 370 ~~i~~~n~~i~~~n~~~~~~~~~~~~~ 396 (712)
T PF13166_consen 370 SIIDELNELIEEHNEKIDNLKKEQNEL 396 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555544
No 65
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=81.90 E-value=8 Score=37.51 Aligned_cols=82 Identities=28% Similarity=0.401 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHH-Hhhh---CCCCChhh---hh
Q 008136 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELIL-RLLD---NDELSPEQ---VN 203 (576)
Q Consensus 131 ~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lL-RlLd---Nd~Ldpe~---V~ 203 (576)
..+.....++.++.+++.+|.++. ....+..-.++..++..+-+.+..+..+..++ +++. ...++.+. +.
T Consensus 119 ~~~~~~~~l~~l~~~l~~le~~~~---~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 195 (292)
T PF01544_consen 119 IVDDYFEVLEELEDELDELEDELD---DRPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDEDKEYLR 195 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---HTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc---cccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 334444455555555555555540 11111224678888888888888888887777 8887 44455555 67
Q ss_pred hhhHHHHHHHHh
Q 008136 204 DVKDLLEDYVER 215 (576)
Q Consensus 204 dIKEdIeyYVE~ 215 (576)
++.++++.+.+.
T Consensus 196 ~~~~~~~~~~~~ 207 (292)
T PF01544_consen 196 DLLDRIERLLER 207 (292)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 66
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.53 E-value=8.6 Score=36.19 Aligned_cols=76 Identities=20% Similarity=0.347 Sum_probs=49.9
Q ss_pred HHHHHHhHhhHHHHhhhhhcccCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCC--CChhhhhhhhHHHHHHHH
Q 008136 139 VSELESQIDSFEAELEGLTVKKGK-TRPPRLTHLETSITRHKAHIMKLELILRLLDNDE--LSPEQVNDVKDLLEDYVE 214 (576)
Q Consensus 139 IdeL~~QiE~~EaEiE~Ls~KK~K-k~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~--Ldpe~V~dIKEdIeyYVE 214 (576)
|.+|+.|+..++.++-.|...-.. ....-.++|...|...+--+..||.-|..|..+. ++++++..|......|..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k 159 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRK 159 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 555555555555555555321111 2223356777888888888888887777776544 789999999998888864
No 67
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=81.25 E-value=35 Score=38.63 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhcc
Q 008136 45 EADLKKEIKKLQRYRDQIKTWIQS 68 (576)
Q Consensus 45 E~DLKKEIKKLQRlRDQIKtWlas 68 (576)
-.+|+.||++|+...++++.|-.-
T Consensus 109 ~~~L~~~~~~l~~~~~~l~~~~~l 132 (646)
T PRK05771 109 ISELENEIKELEQEIERLEPWGNF 132 (646)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcC
Confidence 356788889999999999999653
No 68
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.84 E-value=1e+02 Score=34.72 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=17.6
Q ss_pred cchhhhHHHHHHHHHHhH--------HhHHHHHHHhh
Q 008136 5 RKLQGEIDRVLKKVQEGV--------DVFDSIWNKVY 33 (576)
Q Consensus 5 RKLQ~EIDr~LKKV~EGV--------e~Fd~iyeKl~ 33 (576)
.-+|+.|-|.=-||...+ +.||+.+.+|.
T Consensus 4 k~~kKa~sRa~ekvlqk~g~~~~TkD~~FE~~~~~f~ 40 (460)
T KOG3771|consen 4 KGVQKALNRAPEKVLQKLGKVDETKDEQFEQEERNFN 40 (460)
T ss_pred hhhHHHhccccHHHHhhcCCcccccchHHHHHHHHHH
Confidence 445666666555555555 56777766664
No 69
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=80.50 E-value=5.5 Score=35.10 Aligned_cols=66 Identities=20% Similarity=0.327 Sum_probs=41.6
Q ss_pred HHhHhhHHHHhhhhhccc----CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHHhCCC
Q 008136 143 ESQIDSFEAELEGLTVKK----GKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD 218 (576)
Q Consensus 143 ~~QiE~~EaEiE~Ls~KK----~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~nqd 218 (576)
.+=+|.+..|+...-..- -|+.+.=-..+...++||||||.|| ..|...+-++.+.++.|-+--..
T Consensus 5 ~klLemlDtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHkF~iskl----------~pd~~~LG~L~~aL~ey~~~~g~ 74 (82)
T PF11123_consen 5 EKLLEMLDTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHKFQISKL----------QPDENILGELAAALEEYKKMVGA 74 (82)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhcChHHHHHHHHHHHHccchhhhc----------CccHHHHHHHHHHHHHHHHHcCC
Confidence 333455555555442211 1222333567888999999999998 24556667888889999875443
No 70
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.28 E-value=19 Score=42.89 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=42.4
Q ss_pred HHhhhccccccccccCC-CCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhccc
Q 008136 101 CEKETKTKAFSKEGLGQ-QPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKK 160 (576)
Q Consensus 101 vEKE~KTKafSKEGL~~-~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK 160 (576)
++-..|.|+++.-+-.. ...+..+-.+|+.+|.-|++.+|+|.+.++.--.|++.+.+.+
T Consensus 512 l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~ql 572 (1118)
T KOG1029|consen 512 LNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQL 572 (1118)
T ss_pred HHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 33445667777655443 2233445568889999999999999999998888888885433
No 71
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]
Probab=79.64 E-value=11 Score=42.50 Aligned_cols=80 Identities=19% Similarity=0.319 Sum_probs=51.9
Q ss_pred hHHHHHHHhhcCCChhh-HHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008136 24 VFDSIWNKVYDTDNANQ-KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICE 102 (576)
Q Consensus 24 ~Fd~iyeKl~~a~n~nQ-KEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vE 102 (576)
.|++.|+.+.....-.| ...++..|.+|++||++..+..+.=+...+-++.. ...+...|+.|..+||..|..+....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~~i~~~~~~~~~~~~~~~~-~r~~g~ll~an~~~i~~~~~~v~~~~ 344 (564)
T COG1293 266 LFNEALDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEE-LRQKGELLYANLQLIEEGLKSVRLAD 344 (564)
T ss_pred HHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhehhh
Confidence 59999999888777665 33477777777777776555555444444444311 24466778888888888776665443
Q ss_pred hh
Q 008136 103 KE 104 (576)
Q Consensus 103 KE 104 (576)
..
T Consensus 345 ~~ 346 (564)
T COG1293 345 FY 346 (564)
T ss_pred hc
Confidence 33
No 72
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=79.30 E-value=19 Score=31.54 Aligned_cols=32 Identities=38% Similarity=0.563 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
+....++.+||.+-++.|+.+++.++.++..+
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~ 113 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKL 113 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999988887665
No 73
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=79.16 E-value=1.5e+02 Score=35.47 Aligned_cols=10 Identities=20% Similarity=0.258 Sum_probs=6.0
Q ss_pred HHHHhHHHHH
Q 008136 54 KLQRYRDQIK 63 (576)
Q Consensus 54 KLQRlRDQIK 63 (576)
||.-|++.++
T Consensus 536 Kle~Lk~~~~ 545 (762)
T PLN03229 536 KLDMLNEFSR 545 (762)
T ss_pred HHHHHHHHHH
Confidence 4555666665
No 74
>PF05833 FbpA: Fibronectin-binding protein A N-terminus (FbpA); InterPro: IPR008616 This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein, the C-terminal region is IPR008532 from INTERPRO. Fibronectin binding is considered to be an important virulence factor in streptococcal infections. Fibronectin is a dimeric glycoprotein that is present in a soluble form in plasma and extracellular fluids; it is also present in a fibrillar form on cell surfaces. Both the soluble and cellular forms of fibronectin may be incorporated into the extracellular tissue matrix. While fibronectin has critical roles in eukaryotic cellular processes, such as adhesion, migration and differentiation, it is also a substrate for the attachment of bacteria. The binding of pathogenic Streptococcus pyogenes and Staphylococcus aureus to epithelial cells via fibronectin facilitates their internalisation and systemic spread within the host [].; PDB: 3DOA_A 2ZBK_F 2HKJ_A 1Z5B_A 1Z5C_B 1MX0_F 1Z5A_A 1MU5_A 1Z59_A.
Probab=79.06 E-value=0.75 Score=48.74 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHH
Q 008136 168 LTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 209 (576)
Q Consensus 168 l~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdI 209 (576)
++.++..++..+--+..||.++..++.-+ +++++.+|++.+
T Consensus 396 ~~~~~~~i~~~~~el~~l~~~~~~l~~a~-~~~~l~~i~~el 436 (455)
T PF05833_consen 396 IEKLEERIEEAEKELEYLESKLEQLEEAE-DLEELEEIREEL 436 (455)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 34455555555555666666666666422 456677777665
No 75
>PRK01156 chromosome segregation protein; Provisional
Probab=78.83 E-value=94 Score=36.31 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCC
Q 008136 175 ITRHKAHIMKLELILRLLDNDELS 198 (576)
Q Consensus 175 ieRhk~HI~kLE~lLRlLdNd~Ld 198 (576)
+++.+.-+..|+.+-..|++..+.
T Consensus 728 l~~~~~~~~~l~~~r~~l~k~~~~ 751 (895)
T PRK01156 728 MKKIKKAIGDLKRLREAFDKSGVP 751 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhhccch
Confidence 344444566666777777765543
No 76
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=78.55 E-value=75 Score=32.91 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhHhhHHHHhhhh
Q 008136 135 LNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 135 L~~~IdeL~~QiE~~EaEiE~L 156 (576)
|+.-|+.+++++..+|.|+..+
T Consensus 94 L~~E~~~ak~r~~~le~el~~l 115 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAEL 115 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666655
No 77
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=78.24 E-value=25 Score=32.12 Aligned_cols=62 Identities=21% Similarity=0.349 Sum_probs=41.0
Q ss_pred chhhhHHHHHHHHHHhHHhHHHHHHHhhc---CCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhc
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYD---TDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQ 67 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~---a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWla 67 (576)
+|+.+.+..-++++.=-..|+..++++.. .-+..++++++.+|.+....||+++.++..=+.
T Consensus 40 ~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~ 104 (158)
T PF03938_consen 40 KLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQ 104 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555566666666665 446678899999999999999988888875433
No 78
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=78.08 E-value=41 Score=38.46 Aligned_cols=63 Identities=24% Similarity=0.336 Sum_probs=35.5
Q ss_pred chhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccc
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSE 70 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasne 70 (576)
.||..+++|.|.-.|-+..-..+-+.+.. -..+-++++..|..+-++...|+.+.|.+....+
T Consensus 140 ~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~--l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e 202 (546)
T PF07888_consen 140 LLQNQLEECQKEKEELLKENEQLEEEVEQ--LREEVERLEAELEQEEEEMEQLKQQQKELTESSE 202 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777666655555544444411 2334556666666655666666655555555443
No 79
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=78.01 E-value=36 Score=34.07 Aligned_cols=78 Identities=26% Similarity=0.323 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhHhhHHHHhhhhhcccCC-----CC-----CchhHHHHHHHH-----HHHHHHHHHHHHHHhhhCCCC
Q 008136 133 DWLNNLVSELESQIDSFEAELEGLTVKKGK-----TR-----PPRLTHLETSIT-----RHKAHIMKLELILRLLDNDEL 197 (576)
Q Consensus 133 ~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~K-----k~-----~~rl~eLe~~ie-----Rhk~HI~kLE~lLRlLdNd~L 197 (576)
+||...++.|+++++..+.++++|..+... .. ..-++.|+.+++ ...-...+|+.|-.+|++..|
T Consensus 66 e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv 145 (251)
T PF11932_consen 66 ENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDDADV 145 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhccCC
Confidence 344445555555555555555555221111 00 123556666666 333455688999999999998
Q ss_pred Ch-hhhhhhhHHHHHHH
Q 008136 198 SP-EQVNDVKDLLEDYV 213 (576)
Q Consensus 198 dp-e~V~dIKEdIeyYV 213 (576)
++ |++..| ++.|-
T Consensus 146 ~~~ek~r~v---lea~~ 159 (251)
T PF11932_consen 146 SLAEKFRRV---LEAYQ 159 (251)
T ss_pred CHHHHHHHH---HHHHH
Confidence 85 444444 45444
No 80
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=77.82 E-value=1.7e+02 Score=35.97 Aligned_cols=41 Identities=22% Similarity=0.402 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHH-HhhhCCCCChhhhhhhhHHHH------HHHHhCCC
Q 008136 178 HKAHIMKLELIL-RLLDNDELSPEQVNDVKDLLE------DYVERNQD 218 (576)
Q Consensus 178 hk~HI~kLE~lL-RlLdNd~Ldpe~V~dIKEdIe------yYVE~nqd 218 (576)
|+..+..||.-+ .-|..-.+|++.|..++.-|+ .|++.+..
T Consensus 748 ~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~ 795 (1201)
T PF12128_consen 748 AKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRA 795 (1201)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333344443322 345666788877777777666 35555554
No 81
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=77.74 E-value=65 Score=30.51 Aligned_cols=21 Identities=10% Similarity=0.064 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008136 82 QALVDARKLIEREMERFKICE 102 (576)
Q Consensus 82 ~~L~E~RKlIE~~MErFK~vE 102 (576)
..|...+..++.-++.|..+.
T Consensus 130 ~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 130 ERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554
No 82
>PTZ00464 SNF-7-like protein; Provisional
Probab=77.52 E-value=84 Score=31.71 Aligned_cols=28 Identities=7% Similarity=0.052 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008136 167 RLTHLETSITRHKAHIMKLELILRLLDN 194 (576)
Q Consensus 167 rl~eLe~~ieRhk~HI~kLE~lLRlLdN 194 (576)
-++.++..++-.+.++..-+.|=.+|.+
T Consensus 122 ~id~Vd~l~Dei~E~~e~~~EI~e~Ls~ 149 (211)
T PTZ00464 122 NVDKVEDLQDELADLYEDTQEIQEIMGR 149 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3666666777777777777777777765
No 83
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=77.50 E-value=65 Score=38.28 Aligned_cols=44 Identities=25% Similarity=0.410 Sum_probs=31.0
Q ss_pred CchhHHHHHHHHHH-------HHHHHHHHHHHHhhhCCCCCh-hhhhhhhHH
Q 008136 165 PPRLTHLETSITRH-------KAHIMKLELILRLLDNDELSP-EQVNDVKDL 208 (576)
Q Consensus 165 ~~rl~eLe~~ieRh-------k~HI~kLE~lLRlLdNd~Ldp-e~V~dIKEd 208 (576)
..++..|+.-+.+| +--|.+|-.+|+-++|+..+. -+|.++...
T Consensus 547 ~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~Leke 598 (775)
T PF10174_consen 547 RDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKE 598 (775)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34666666655555 567888999999999988774 456666555
No 84
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=77.38 E-value=1.4e+02 Score=34.33 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=9.1
Q ss_pred HHHHhhhCCCCChhhhh
Q 008136 187 LILRLLDNDELSPEQVN 203 (576)
Q Consensus 187 ~lLRlLdNd~Ldpe~V~ 203 (576)
..|.-|..-.|+.++|.
T Consensus 322 rt~aeLh~aRLe~aql~ 338 (546)
T PF07888_consen 322 RTMAELHQARLEAAQLK 338 (546)
T ss_pred HHHHHHHHhhhhHHHHH
Confidence 33344445556666665
No 85
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=77.27 E-value=9.6 Score=43.09 Aligned_cols=127 Identities=20% Similarity=0.331 Sum_probs=43.2
Q ss_pred ccchhhhHHHHHHHHHHhH--------HhHHHHHHHhhcCCChhhH----------HHHHHHHHHHHHHHHHhHHHHHhh
Q 008136 4 SRKLQGEIDRVLKKVQEGV--------DVFDSIWNKVYDTDNANQK----------EKFEADLKKEIKKLQRYRDQIKTW 65 (576)
Q Consensus 4 ~RKLQ~EIDr~LKKV~EGV--------e~Fd~iyeKl~~a~n~nQK----------EKlE~DLKKEIKKLQRlRDQIKtW 65 (576)
-..|+.|++||-..-.+-+ ...+++|++++-+....+. |-+=..+..||++|..+.+.-|.-
T Consensus 266 i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk~~~~~~k~I 345 (619)
T PF03999_consen 266 IEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLKEEYESRKPI 345 (619)
T ss_dssp ---------------------------------------------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888865444444 4458889998754332211 223344677888888766655432
Q ss_pred hcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 008136 66 IQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTK-AFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELES 144 (576)
Q Consensus 66 lasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTK-afSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~ 144 (576)
+ .|++.|+ .-.+.+..+|..+|=. -|.+-| ..+=.+|+.|..+..=|=.++++|..
T Consensus 346 l----------------~~v~k~~---~l~~~~~~Le~~~~D~~Rl~~RG----g~LLkEEk~rk~i~k~lPkle~~L~~ 402 (619)
T PF03999_consen 346 L----------------ELVEKWE---SLWEEMEELEESSKDPSRLNNRG----GHLLKEEKERKRIQKKLPKLEEELKK 402 (619)
T ss_dssp H----------------HHHHHHH---HHHHHHHHHHHHHH-CCGG----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----------------HHHHHHH---HHHHHHHHHHHHhcChhhhcccc----cHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 2 2233333 3333444455544322 244334 12333577788888889999999999
Q ss_pred hHhhHHHHh
Q 008136 145 QIDSFEAEL 153 (576)
Q Consensus 145 QiE~~EaEi 153 (576)
.|+.+|.+-
T Consensus 403 ~l~~wE~e~ 411 (619)
T PF03999_consen 403 KLEEWEEEH 411 (619)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999999883
No 86
>PHA02562 46 endonuclease subunit; Provisional
Probab=76.56 E-value=1.1e+02 Score=33.42 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=14.4
Q ss_pred HHHHHHHHHhHhhHHHHhhhhhc
Q 008136 136 NNLVSELESQIDSFEAELEGLTV 158 (576)
Q Consensus 136 ~~~IdeL~~QiE~~EaEiE~Ls~ 158 (576)
.+.|+++..+...+++++++|..
T Consensus 350 ~~~i~~~~~~~~~l~~ei~~l~~ 372 (562)
T PHA02562 350 KQSLITLVDKAKKVKAAIEELQA 372 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666777777777743
No 87
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=76.34 E-value=82 Score=32.01 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=12.2
Q ss_pred CCChhhhhhhhHHHHHHH
Q 008136 196 ELSPEQVNDVKDLLEDYV 213 (576)
Q Consensus 196 ~Ldpe~V~dIKEdIeyYV 213 (576)
.|+-|.|+=+|+-|=-|-
T Consensus 204 ~lEeeRi~f~k~~lw~~~ 221 (240)
T cd07672 204 KQECERINFFRNAVWTHV 221 (240)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356677777777776665
No 88
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=76.16 E-value=20 Score=32.72 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
|+...|+.+||..-++.|+.+++.++.++..+
T Consensus 89 E~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~ 120 (140)
T PRK03947 89 EKDLDEAIEILDKRKEELEKALEKLEEALQKL 120 (140)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999997766
No 89
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.12 E-value=60 Score=39.97 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 008136 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREM 95 (576)
Q Consensus 41 KEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~M 95 (576)
..-++.+|.+.-+.|+.+++.|. +.-....|+..|.+.+..|+..+
T Consensus 607 l~~~~~~l~~~~~eL~~~~~~i~---------~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 607 KNHINNELESKEEQLSSYEDKLF---------DVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---------cCCCchhHHHHHHHHHHHHHHHH
Confidence 33455566666666667777776 11123468888998888888877
No 90
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=75.93 E-value=30 Score=39.89 Aligned_cols=27 Identities=22% Similarity=0.494 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhHHHHHhhhcccchhh
Q 008136 47 DLKKEIKKLQRYRDQIKTWIQSSEIKD 73 (576)
Q Consensus 47 DLKKEIKKLQRlRDQIKtWlasneIKD 73 (576)
-++.+|-.|+++|+-.|.|-++.++++
T Consensus 356 ~~~~~~~~~~~~~~sl~~~~~~E~~~~ 382 (607)
T KOG0240|consen 356 KNVALKEELEKLRNSLKRWRNGEEVKE 382 (607)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCcccc
Confidence 467788899999999999999999883
No 91
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=75.82 E-value=9 Score=37.78 Aligned_cols=63 Identities=24% Similarity=0.470 Sum_probs=36.2
Q ss_pred chhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhccc-chhhhhhhhhHHHHH
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS-EIKDKKVSASYEQAL 84 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasn-eIKDK~~~a~~~~~L 84 (576)
.+|+|++.+|.+...-| +..+.|||.|||+|.+-=+++..-+... .+|+|.
T Consensus 102 QVqqeL~~tf~rL~~~V-------------------d~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa--------- 153 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQV-------------------DQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKA--------- 153 (171)
T ss_dssp --------HHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 35667777766665544 3456788888888887666666544432 344444
Q ss_pred HHHHHHHHHHHHHHHH
Q 008136 85 VDARKLIEREMERFKI 100 (576)
Q Consensus 85 ~E~RKlIE~~MErFK~ 100 (576)
-.+|.+.|+|+.
T Consensus 154 ----~~L~~eL~~F~~ 165 (171)
T PF04799_consen 154 ----NWLESELERFQE 165 (171)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHH
Confidence 478888999963
No 92
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=75.68 E-value=1.5e+02 Score=33.59 Aligned_cols=129 Identities=16% Similarity=0.271 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHhhhccccccccccCCCCCCChhH
Q 008136 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERF-KICEKETKTKAFSKEGLGQQPKTDPKE 125 (576)
Q Consensus 47 DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErF-K~vEKE~KTKafSKEGL~~~~K~DP~E 125 (576)
++-++|+.++...++.+.-+..-++++-. +.=..|+.+++.+ -.+|||.+.|.|=.+.+
T Consensus 249 ~i~~~i~~i~~~l~~~~~~L~~l~l~~~~----------~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~---------- 308 (560)
T PF06160_consen 249 DIEEEIEQIEEQLEEALALLKNLELDEVE----------EENEEIEERIDQLYDILEKEVEAKKYVEKNL---------- 308 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------
Confidence 67788888888888888888888877322 3333455555543 45688887776654433
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhh
Q 008136 126 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVN 203 (576)
Q Consensus 126 keK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~ 203 (576)
.-|.+.|+.++.+...+..|++.++..=.=. ...++....+-++.+-=..+++.+...+.++.+.-..|.
T Consensus 309 -------~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~-~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~ 378 (560)
T PF06160_consen 309 -------KELYEYLEHAKEQNKELKEELERVSQSYTLN-HNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQ 378 (560)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence 2345666667777777777777763211101 011222222222223333445556666666666644443
No 93
>KOG2117 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.16 E-value=11 Score=41.15 Aligned_cols=106 Identities=23% Similarity=0.360 Sum_probs=63.8
Q ss_pred CccccchhhhHHHHHHHHHH---hHHhHHHHHHHhhcCCChh-----------------------hHHHHHHHHHHHHHH
Q 008136 1 MGASRKLQGEIDRVLKKVQE---GVDVFDSIWNKVYDTDNAN-----------------------QKEKFEADLKKEIKK 54 (576)
Q Consensus 1 Maa~RKLQ~EIDr~LKKV~E---GVe~Fd~iyeKl~~a~n~n-----------------------QKEKlE~DLKKEIKK 54 (576)
||+.-+.|..+++--+|--+ .|=.||++|+-|+...+.. -|-|+|-.|.-| +|
T Consensus 44 ~ask~~~~k~ae~qhqKAlaEDptif~YDe~YDdmq~kk~e~~~~~~~~~~r~kPkYi~nLie~aerRkkE~e~r~E-Rk 122 (379)
T KOG2117|consen 44 QASKTKSQKTAERQHQKALAEDPTIFGYDEVYDDMQSKKREQLPRLRLREKRRKPKYIENLIEAAERRKKEQELRYE-RK 122 (379)
T ss_pred cchHHHHHHHHHHHHHHhhhcCCchhccchhhHHHHHHHhhhhHhhhhhccccccHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 45555666666666665533 5778899999996443311 133334333333 56
Q ss_pred HHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHH--HHHHHhhhccccc
Q 008136 55 LQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMER--FKICEKETKTKAF 110 (576)
Q Consensus 55 LQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MEr--FK~vEKE~KTKaf 110 (576)
|||=|+-=..-. +=|+|=|+.+|..+|.|-++-+|.+=++ |-+|---+|.|-|
T Consensus 123 l~KeREkEg~~f---dDkekfVTgAYKKklEE~~k~~e~Ek~~e~~e~~ddVTKqKDl 177 (379)
T KOG2117|consen 123 LLKEREKEGDEF---DDKEKFVTGAYKKKLEEVKKWLEQEKEEEALEATDDVTKQKDL 177 (379)
T ss_pred HHHHHHhhcccc---ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhH
Confidence 777776433222 3456678899999999999999975433 3333333444433
No 94
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=74.55 E-value=88 Score=39.05 Aligned_cols=71 Identities=11% Similarity=0.213 Sum_probs=43.5
Q ss_pred HHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHH
Q 008136 14 VLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIER 93 (576)
Q Consensus 14 ~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~ 93 (576)
.+..+.|+++.++.+-+++ .+|+++|+.|.++......|..-..-... ..+...+..++.
T Consensus 221 ~i~~l~e~~~~~~~~~~~l-------------e~l~~~~~~l~~i~~~y~~y~~~~~~~~~-------~~~~~~~~~~~~ 280 (1353)
T TIGR02680 221 ELTDVADALEQLDEYRDEL-------------ERLEALERALRNFLQRYRRYARTMLRRRA-------TRLRSAQTQYDQ 280 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3777888888888776665 36788888888888877777663222211 144444555555
Q ss_pred HHHHHHHHHhh
Q 008136 94 EMERFKICEKE 104 (576)
Q Consensus 94 ~MErFK~vEKE 104 (576)
.++.-..++.+
T Consensus 281 ~~~~~~~~~~~ 291 (1353)
T TIGR02680 281 LSRDLGRARDE 291 (1353)
T ss_pred HHHHHHHHHHH
Confidence 55544444433
No 95
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.48 E-value=1.2e+02 Score=32.14 Aligned_cols=96 Identities=17% Similarity=0.268 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHhhcCCChhh--HHHHHHHHHHHHHHHHHhHHHHHhhhcccchhh-----hhhhhhHHH
Q 008136 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ--KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKD-----KKVSASYEQ 82 (576)
Q Consensus 10 EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQ--KEKlE~DLKKEIKKLQRlRDQIKtWlasneIKD-----K~~~a~~~~ 82 (576)
+|...++++.+-++.-+..+.++..+.++-+ |.+||.+...=.++--..|-.||..-..++--. ..++.....
T Consensus 44 ~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~~r~rrt 123 (297)
T KOG0810|consen 44 EIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSAGLRTRRT 123 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccchhHHH
Confidence 5556666666666666666666666666666 889988776555555556666666554443221 111223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 008136 83 ALVDARKLIEREMERFKICEKET 105 (576)
Q Consensus 83 ~L~E~RKlIE~~MErFK~vEKE~ 105 (576)
...-..|..+..|..|-......
T Consensus 124 q~~~~~kkf~~~M~~f~~~~~~~ 146 (297)
T KOG0810|consen 124 QTSALSKKLKELMNEFNRTQSKY 146 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555688888899886555433
No 96
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=74.28 E-value=2.6e+02 Score=35.72 Aligned_cols=108 Identities=26% Similarity=0.315 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhccc-chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCC
Q 008136 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSS-EIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQP 119 (576)
Q Consensus 41 KEKlE~DLKKEIKKLQRlRDQIKtWlasn-eIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~ 119 (576)
|+.+-..|.+++.+|.-.-.=|+.++... .|..++ +-.-...|.+....+|+...+..+.+....+......
T Consensus 997 ~~~~l~~l~~~~~~l~~~~rFI~~vi~~~i~i~~~~-------k~~l~~~L~~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1388)
T PTZ00108 997 KEYLLGKLERELARLSNKVRFIKHVINGELVITNAK-------KKDLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEE 1069 (1388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCeeEEccCC-------HHHHHHHHHHcCCCccchhhhhccccccccccccccc
Confidence 55666677777777775555666666543 333433 1111111333333445444333333322222222111
Q ss_pred CCChhHHHH-------HHHHHHH---------HHHHHHHHHhHhhHHHHhhhh
Q 008136 120 KTDPKEKAK-------SETRDWL---------NNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 120 K~DP~EkeK-------~E~~~WL---------~~~IdeL~~QiE~~EaEiE~L 156 (576)
. +..+.+- ...-+|| .+-|+.|.+|++..+.|++.|
T Consensus 1070 ~-~~~~~~~~~~~~~~~~~ydYLL~M~i~sLT~e~v~kL~~e~~~~~~e~~~L 1121 (1388)
T PTZ00108 1070 D-DEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKELEKL 1121 (1388)
T ss_pred c-cccccccccccccchhhhHHHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111000 0135566 567999999999999999999
No 97
>PRK04863 mukB cell division protein MukB; Provisional
Probab=74.11 E-value=1.7e+02 Score=37.41 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 008136 174 SITRHKAHIMKLELILRLLD 193 (576)
Q Consensus 174 ~ieRhk~HI~kLE~lLRlLd 193 (576)
....++.+..++..+-.-|.
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~ 523 (1486)
T PRK04863 504 RLREQRHLAEQLQQLRMRLS 523 (1486)
T ss_pred HhHHHHHHHHhhHHHHHHHH
Confidence 33444555555555554443
No 98
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=74.11 E-value=1.6e+02 Score=33.25 Aligned_cols=59 Identities=19% Similarity=0.452 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHhhhcccccccccc
Q 008136 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMER-FKICEKETKTKAFSKEGL 115 (576)
Q Consensus 47 DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MEr-FK~vEKE~KTKafSKEGL 115 (576)
++-++|+.|+...++...-+.+-++++-. +.=+.|+.+++. |-.+|||.+.|.|...-+
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~l~l~~~~----------~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~ 312 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEELDLDEAE----------EKNEEIQERIDQLYDILEREVKARKYVEKNS 312 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcChHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35556666665555555556666666222 222334444443 345677777777765444
No 99
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=73.89 E-value=74 Score=32.05 Aligned_cols=185 Identities=16% Similarity=0.216 Sum_probs=84.7
Q ss_pred chhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHH-HhHHHHHhhhcccchhhhhhhhhHHHHH
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ-RYRDQIKTWIQSSEIKDKKVSASYEQAL 84 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQ-RlRDQIKtWlasneIKDK~~~a~~~~~L 84 (576)
+|..|++.+.+|+.--..--+.++.....+-+.. .+|...|++|+ ...+-|..|..-+.--+......+...|
T Consensus 56 ~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a------~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l 129 (264)
T PF06008_consen 56 SLEQDVENLQEKATKVSRKAQQLNNNTERTLQRA------QDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRAL 129 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHH
Confidence 4555666666666655555555544443332211 25666666665 4455555564444411111123344455
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCC
Q 008136 85 VDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR 164 (576)
Q Consensus 85 ~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~ 164 (576)
.|.+++++ +|+.+.|+..= ..++.+..++..-|..+-..+....+..+.=.+.+...= ..-
T Consensus 130 ~ea~~mL~-----------emr~r~f~~~~-------~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L-~~~ 190 (264)
T PF06008_consen 130 AEAQRMLE-----------EMRKRDFTPQR-------QNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDL-NDY 190 (264)
T ss_pred HHHHHHHH-----------HHHhccchhHH-------HHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHH-HHH
Confidence 55555543 34555554432 224556666655555555544433333333222221000 011
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC----ChhhhhhhhHHHHHHHHh
Q 008136 165 PPRLTHLETSITRHKAHIMKLELILRLLDNDEL----SPEQVNDVKDLLEDYVER 215 (576)
Q Consensus 165 ~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~L----dpe~V~dIKEdIeyYVE~ 215 (576)
..++.+++..+++-..++..=+.+.+.-.+--- -.+.|.+.+..+..+|..
T Consensus 191 ~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~ 245 (264)
T PF06008_consen 191 NAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKE 245 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234555566665555555555544443333211 133444445555555543
No 100
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=73.29 E-value=84 Score=32.32 Aligned_cols=147 Identities=23% Similarity=0.356 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHH---------HHHHHHHHhHHHHHhhhcccchh-hhhhhhh
Q 008136 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLK---------KEIKKLQRYRDQIKTWIQSSEIK-DKKVSAS 79 (576)
Q Consensus 10 EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLK---------KEIKKLQRlRDQIKtWlasneIK-DK~~~a~ 79 (576)
||+. |+..-+-++.|..--.++.......--+.+|.=|. -||..|.+..+|.+ |+..-.-. ...
T Consensus 104 Ei~~-L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~~~l~~~~-W~~~~~~~~~~~---- 177 (335)
T PF08429_consen 104 EIDQ-LKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLRRRLEQLE-WLEEAREILSDP---- 177 (335)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHHHHHHHHH-HHHHHHHHhccc----
Confidence 4554 56666778888887777776522222556666554 48888898888876 98764321 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcc
Q 008136 80 YEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVK 159 (576)
Q Consensus 80 ~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~K 159 (576)
..-.|.+.|++|+... .-.. |... +... .+.++-.+.+.+|..+..
T Consensus 178 ~~~tL~~l~~Ll~~g~--------------------~l~~---~~~~---~~~~----~L~~~l~~~~~We~ka~~---- 223 (335)
T PF08429_consen 178 DRLTLDELRELLDEGE--------------------RLGI---PSDE---KLMA----ELQELLKQGEEWEEKAKE---- 223 (335)
T ss_pred cCCcHHHHHHHHHhhh--------------------cCCC---ccch---HHHH----HHHHHHHHHHHHHHHHHH----
Confidence 0125777777776543 2111 1111 1111 133444455556555432
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHH
Q 008136 160 KGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLE 210 (576)
Q Consensus 160 K~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIe 210 (576)
.+.+++.|+..||.|++..++=-+.++.+..|++.+.
T Consensus 224 --------------~L~~~~~~l~~Le~l~~~~~~ipv~~~~~~~L~~~l~ 260 (335)
T PF08429_consen 224 --------------LLSRPRVSLEQLEALLEEAENIPVSLPSLDKLKDALQ 260 (335)
T ss_pred --------------HHhcCCCCHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 2446677777777777777776666666666555443
No 101
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=73.16 E-value=47 Score=29.97 Aligned_cols=101 Identities=19% Similarity=0.294 Sum_probs=57.7
Q ss_pred hhhhHHHHHHHHHHhHHhHHHHHHHhhcCCC--hhhHHHHHHHHHHHHHHHH-HhHHHHHhhhcccchhhh---h-hhhh
Q 008136 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN--ANQKEKFEADLKKEIKKLQ-RYRDQIKTWIQSSEIKDK---K-VSAS 79 (576)
Q Consensus 7 LQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n--~nQKEKlE~DLKKEIKKLQ-RlRDQIKtWlasneIKDK---~-~~a~ 79 (576)
+=++|...+.+|+.-|..++..+..+..+.. ..-|++|+.-. .+|+++. .++..||.--..++.-++ . +...
T Consensus 7 ~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~-~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~ 85 (151)
T cd00179 7 EVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLV-QEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRI 85 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHH
Confidence 4468999999999999999999999988876 23366665422 2222221 233333322111110000 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008136 80 YEQALVDARKLIEREMERFKICEKETKTK 108 (576)
Q Consensus 80 ~~~~L~E~RKlIE~~MErFK~vEKE~KTK 108 (576)
-.....-.++.+-..|.+|-.+++..|.+
T Consensus 86 ~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~ 114 (151)
T cd00179 86 RKTQHSGLSKKFVEVMTEFNKAQRKYRER 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11234445677788899999998887743
No 102
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=73.14 E-value=66 Score=33.07 Aligned_cols=91 Identities=20% Similarity=0.267 Sum_probs=60.5
Q ss_pred cchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCC-hhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHH
Q 008136 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN-ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQA 83 (576)
Q Consensus 5 RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n-~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~ 83 (576)
.-|+.||+.=||+.-+.+-.|-.--.--.+... ...-=+|=+-|++|++.++..+.+++.-...-+-+ .+.|.+.
T Consensus 39 ~~L~~eiE~~Lk~KC~~Lls~~~p~~~~~s~~l~~ak~~~L~~~l~~ek~~~~~~k~~~~e~~~~l~~q----~~~y~~v 114 (238)
T PF14735_consen 39 QRLPREIEERLKKKCFSLLSYHQPDSESSSEGLKAAKSWQLPELLREEKQRLEKEKAQLRELLVLLERQ----FATYYQV 114 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccccchhhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 457889999999988877766432111111111 22345788899999999999999888766443322 5778887
Q ss_pred HHHHHHHHHHHHHHHH
Q 008136 84 LVDARKLIEREMERFK 99 (576)
Q Consensus 84 L~E~RKlIE~~MErFK 99 (576)
|..+=.+.+.=.++||
T Consensus 115 L~~cl~~L~~li~~~r 130 (238)
T PF14735_consen 115 LLQCLQLLQKLIEKHR 130 (238)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777666666555553
No 103
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=72.73 E-value=60 Score=32.27 Aligned_cols=96 Identities=21% Similarity=0.379 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHH----HHHHhHHHHHhhhcccchhhhhh--hhhHHH
Q 008136 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIK----KLQRYRDQIKTWIQSSEIKDKKV--SASYEQ 82 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIK----KLQRlRDQIKtWlasneIKDK~~--~a~~~~ 82 (576)
.|+.+++-+..|-|..+-.-+.+.... +.++++.|| .|+|.+|+|+....-. +||.. ...+..
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~---------~r~~~~klk~~~~el~k~~~~l~~L~~L~--~dknL~eReeL~~ 125 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQ---------ERELERKLKDKDEELLKTKDELKHLKKLS--EDKNLAEREELQR 125 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCchhHHHHHH
Confidence 466666666666666666666655332 345566666 6788999999866553 34442 144556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh--cccccccccc
Q 008136 83 ALVDARKLIEREMERFKICEKET--KTKAFSKEGL 115 (576)
Q Consensus 83 ~L~E~RKlIE~~MErFK~vEKE~--KTKafSKEGL 115 (576)
.|.+....++..=++-+.+||.. =+|.|+.+-.
T Consensus 126 kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~ 160 (194)
T PF15619_consen 126 KLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLA 160 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 67777777777777777777733 3455555544
No 104
>PF06798 PrkA: PrkA serine protein kinase C-terminal domain; InterPro: IPR010650 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry is found at the C terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=72.60 E-value=1.2e+02 Score=31.29 Aligned_cols=45 Identities=11% Similarity=0.302 Sum_probs=25.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhh-CCC-CChhhhhhhhHHHHHH
Q 008136 166 PRLTHLETSITRHKAHIMKLELILRLLD-NDE-LSPEQVNDVKDLLEDY 212 (576)
Q Consensus 166 ~rl~eLe~~ieRhk~HI~kLE~lLRlLd-Nd~-Ldpe~V~dIKEdIeyY 212 (576)
.-.+.|...|+++=| ..++.+++.+. .-. .|.++-..+.+-|+--
T Consensus 191 ~~~e~Lr~~iEkkL~--~d~~~~~~~~t~~~k~~d~e~~~~~~~~i~rL 237 (254)
T PF06798_consen 191 TSYERLREAIEKKLF--SDVKDLIKIITESSKTPDKEQQRKIDEVIERL 237 (254)
T ss_pred hhhHHHHHHHHHHHH--HHHHHHHHhcchhccCCCHHHHHHHHHHHHHH
Confidence 335566778888877 56788888775 222 3444433444433333
No 105
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=71.85 E-value=38 Score=40.72 Aligned_cols=115 Identities=24% Similarity=0.305 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHH-------HhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008136 38 ANQKEKFEADLKKEIKKLQRYRDQI-------KTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAF 110 (576)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQRlRDQI-------KtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKaf 110 (576)
-+|||-+--.|+.|+.-|+.-|-+- ...+.-.-.|=++-.+-....|+|+|+..|-==+.--++||.--
T Consensus 286 lSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd---- 361 (1265)
T KOG0976|consen 286 LSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRD---- 361 (1265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH----
Confidence 4678888888888888888766432 22332222233333466777888888888876666677776532
Q ss_pred cccccCCCCCCChhHHHH--HHHHHHHHHHHHHHHHhHhhHHHHhhhhhccc
Q 008136 111 SKEGLGQQPKTDPKEKAK--SETRDWLNNLVSELESQIDSFEAELEGLTVKK 160 (576)
Q Consensus 111 SKEGL~~~~K~DP~EkeK--~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK 160 (576)
..|+...++ .|+.+ ++.-+-|.....++..|||.+..-|-++...|
T Consensus 362 --~al~dvr~i--~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~ 409 (1265)
T KOG0976|consen 362 --MALMDVRSI--QEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGK 409 (1265)
T ss_pred --HHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 233322111 11111 12233455566777888888877777765443
No 106
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=71.81 E-value=1.4e+02 Score=31.68 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHH
Q 008136 168 LTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDY 212 (576)
Q Consensus 168 l~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyY 212 (576)
|++....+...+--|..+|.++. .+...+..+|..||+-++.+
T Consensus 241 I~~~~~~k~e~~~~I~~ae~~~~--~~r~~t~~Ei~~Lk~~~~~L 283 (312)
T smart00787 241 IEDLTNKKSELNTEIAEAEKKLE--QCRGFTFKEIEKLKEQLKLL 283 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHH
Confidence 44555556666666666666543 56678899999999887765
No 107
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.72 E-value=68 Score=36.44 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=29.1
Q ss_pred hhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHH
Q 008136 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLK 49 (576)
Q Consensus 7 LQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLK 49 (576)
.+.++..+++++.+=-+..+.|-+++..+....+-++|+..|+
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~ 431 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELG 431 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4567777777777777777888888877766555455544443
No 108
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=71.57 E-value=49 Score=32.58 Aligned_cols=31 Identities=13% Similarity=0.398 Sum_probs=21.5
Q ss_pred cchhhhHHHHHHHHHHhHHhHHHHHHHhhcC
Q 008136 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDT 35 (576)
Q Consensus 5 RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a 35 (576)
.|||+++.+++++|..--..|+..+.....+
T Consensus 115 ~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a 145 (251)
T cd07653 115 SKLQQKLESSIKQLEKSKKAYEKAFKEAEKA 145 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777776554433
No 109
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=71.52 E-value=97 Score=32.12 Aligned_cols=22 Identities=9% Similarity=0.424 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 008136 41 KEKFEADLKKEIKKLQRYRDQI 62 (576)
Q Consensus 41 KEKlE~DLKKEIKKLQRlRDQI 62 (576)
.-.+|.||.+.=+|+-|.|+++
T Consensus 61 v~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 61 VSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 110
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=71.15 E-value=56 Score=38.79 Aligned_cols=112 Identities=23% Similarity=0.353 Sum_probs=57.2
Q ss_pred cCCChhhHHHHHHH---HHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008136 34 DTDNANQKEKFEAD---LKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAF 110 (576)
Q Consensus 34 ~a~n~nQKEKlE~D---LKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKaf 110 (576)
++.+.+-|+-|-.- |.|-.--|.|-||-.|--+.+ ||+--.++...+-|.|.--.|-.-|+.- || .
T Consensus 397 ~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~ks--lk~ela~~l~~DeLaEkdE~I~~lm~EG---Ek------L 465 (961)
T KOG4673|consen 397 ESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKS--LKKELAAALLKDELAEKDEIINQLMAEG---EK------L 465 (961)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHhhhhHHHHHHHHHHHHHHHHH---HH------h
Confidence 44555556666543 344444444666666554432 3433322333345666667777777655 33 3
Q ss_pred cccccCCCC---CCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhh-cccCCC
Q 008136 111 SKEGLGQQP---KTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT-VKKGKT 163 (576)
Q Consensus 111 SKEGL~~~~---K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls-~KK~Kk 163 (576)
||+-|.... |+-.++|+- .+++..+..+|-.++.|.+.|. ...+|.
T Consensus 466 SK~ql~qs~iIkKLRAk~ke~-------etl~~K~ge~i~~L~sE~~~lk~il~~Ke 515 (961)
T KOG4673|consen 466 SKKQLAQSAIIKKLRAKIKEA-------ETLEEKKGELITKLQSEENKLKSILRDKE 515 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhh-------hHHHHHhhhHHHHHHHHHHHHHHHhhhHH
Confidence 444443321 111222221 2456667777888888877773 344443
No 111
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=71.14 E-value=81 Score=32.39 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccc--hhhh-hhhhhHHHHH
Q 008136 8 QGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSE--IKDK-KVSASYEQAL 84 (576)
Q Consensus 8 Q~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasne--IKDK-~~~a~~~~~L 84 (576)
|.||+|+--||-+-+..|..+....-+ -=.+...--+||||++..| |.++.=-+++. |-.. ..........
T Consensus 85 qa~v~RlE~KVv~pL~~Y~~~cK~~r~-----elK~~~~ar~kEikq~~~L-eklr~k~psdr~~isqae~el~kas~~~ 158 (219)
T PF06730_consen 85 QAEVERLEAKVVEPLSQYGTICKHARD-----ELKKFNKARNKEIKQLKQL-EKLRQKNPSDRQIISQAESELQKASVDA 158 (219)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-HHHHccCCccchhhhHHHHHHHHHHHHH
Confidence 578999999998888888876654311 0124455667888888744 33343333332 1000 0001111123
Q ss_pred HHHHHHHHHHHHHH
Q 008136 85 VDARKLIEREMERF 98 (576)
Q Consensus 85 ~E~RKlIE~~MErF 98 (576)
...-+.+|+.|+.|
T Consensus 159 ~rt~~~Lee~i~~F 172 (219)
T PF06730_consen 159 TRTTKQLEETIDNF 172 (219)
T ss_pred HHHHHHHHHHHHHH
Confidence 44457889999999
No 112
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=70.68 E-value=87 Score=28.76 Aligned_cols=121 Identities=19% Similarity=0.336 Sum_probs=71.7
Q ss_pred cchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCC--hhhHHHHHHHHHH---HHHHHHHhHHHHHhhhcccchhhhhhhhh
Q 008136 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN--ANQKEKFEADLKK---EIKKLQRYRDQIKTWIQSSEIKDKKVSAS 79 (576)
Q Consensus 5 RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n--~nQKEKlE~DLKK---EIKKLQRlRDQIKtWlasneIKDK~~~a~ 79 (576)
..|+.||.++...+.+-......+-+.+..-.. ..-.+|||.+|-+ -|+.|+.+|++...-
T Consensus 6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~-------------- 71 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQEL-------------- 71 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------------
Confidence 456777777777777766666666555543222 1126789999875 689999999986542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 80 YEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 80 ~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
...+.+.|..++.....+...|..-.. ....-..-..=+..-|++|+.|+..+-..||.+
T Consensus 72 -~~~~~~l~~~~~~a~~~l~~~e~sw~~----------------qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 72 -QQEINELKAEAESAKAELEESEASWEE----------------QKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 225556666666666655444332110 011111223334666777777777777776665
No 113
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=70.59 E-value=19 Score=41.52 Aligned_cols=54 Identities=19% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHh-HHHHHhhhccc
Q 008136 14 VLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRY-RDQIKTWIQSS 69 (576)
Q Consensus 14 ~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRl-RDQIKtWlasn 69 (576)
.++++.+-+..+++.++++... -++.+.....|++++.+|+.. +++++.|..-+
T Consensus 75 ~l~~le~~l~e~~~~~e~L~~~--~~~L~E~~~~L~~~~~~l~~~~~~~l~~~~~l~ 129 (759)
T PF01496_consen 75 ELEELEEELRELNENLEKLEEE--LNELEEEKNVLEEEIEFLEELKLEELEPWKNLD 129 (759)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 3344444444555555555432 233344556788888888888 88888888654
No 114
>PRK09039 hypothetical protein; Validated
Probab=70.55 E-value=81 Score=33.62 Aligned_cols=62 Identities=21% Similarity=0.218 Sum_probs=29.3
Q ss_pred HHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHH
Q 008136 138 LVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 209 (576)
Q Consensus 138 ~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdI 209 (576)
.|.-|+.||+.++..+..| ...|+..+....-.+-.|..|+.-|+..-.. ...++..++.++
T Consensus 138 ~V~~L~~qI~aLr~Qla~l--------e~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~--~~~~l~~~~~~~ 199 (343)
T PRK09039 138 QVELLNQQIAALRRQLAAL--------EAALDASEKRDRESQAKIADLGRRLNVALAQ--RVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHH
Confidence 3555555555555555444 2334455555544444455554444333211 134455556555
No 115
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=70.23 E-value=1.1e+02 Score=38.20 Aligned_cols=37 Identities=30% Similarity=0.248 Sum_probs=21.7
Q ss_pred CChhHHHHHHHHHHHHHHH---HHHHHhHhhHHHHhhhhh
Q 008136 121 TDPKEKAKSETRDWLNNLV---SELESQIDSFEAELEGLT 157 (576)
Q Consensus 121 ~DP~EkeK~E~~~WL~~~I---deL~~QiE~~EaEiE~Ls 157 (576)
+..++.+..++..||.+-- ..+..-.-.+++++|.|.
T Consensus 695 L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~ 734 (1317)
T KOG0612|consen 695 LQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLS 734 (1317)
T ss_pred HhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHh
Confidence 3344777888888887533 233333344566666663
No 116
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=70.00 E-value=74 Score=27.64 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhHHhHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccc
Q 008136 11 IDRVLKKVQEGVDVFDSIWNKVYDTD-NANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSE 70 (576)
Q Consensus 11 IDr~LKKV~EGVe~Fd~iyeKl~~a~-n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasne 70 (576)
++...+++.+....+++.++++.... ++..|+.+ ..+++..+.....++++-.....++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~y~~~~~~~~~~~~~~~ 136 (181)
T PF12729_consen 77 RQEIEKEIDEARAEIDEALEEYEKLILSPEEKQLL-EEFKEAWKAYRKLRDQVIELAKSGD 136 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 44444444444444444444444332 12223322 3344444444445555444444433
No 117
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=69.91 E-value=2e+02 Score=36.38 Aligned_cols=19 Identities=21% Similarity=0.393 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008136 125 EKAKSETRDWLNNLVSELE 143 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~ 143 (576)
|+-|.|+.+.|..+-+.|.
T Consensus 1692 e~L~~eA~~Ll~~a~~kl~ 1710 (1758)
T KOG0994|consen 1692 EQLRTEAEKLLGQANEKLD 1710 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666655555443
No 118
>PRK11637 AmiB activator; Provisional
Probab=69.08 E-value=1.4e+02 Score=32.19 Aligned_cols=25 Identities=0% Similarity=-0.053 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008136 80 YEQALVDARKLIEREMERFKICEKE 104 (576)
Q Consensus 80 ~~~~L~E~RKlIE~~MErFK~vEKE 104 (576)
....|.+.++.|+.+-+.|+..=+.
T Consensus 108 l~~eI~~~q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 108 LNASIAKLEQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777655433
No 119
>PRK05287 hypothetical protein; Provisional
Probab=68.84 E-value=27 Score=36.19 Aligned_cols=125 Identities=19% Similarity=0.309 Sum_probs=72.8
Q ss_pred HHHHHH-HHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChh
Q 008136 46 ADLKKE-IKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPK 124 (576)
Q Consensus 46 ~DLKKE-IKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~ 124 (576)
+|||-| ||.|.|.|-.++.|..+.+|-- . .|......|+...+.- ...+|..-
T Consensus 57 ~DlKsdLlKeLerq~~~L~~~~~~p~vd~-~-------~l~~~l~~l~~~~~~L-----------------~~~~r~Gq- 110 (250)
T PRK05287 57 GDLKSDLLKELERQRQKLQKWRGNPGVDQ-E-------ALEALLQELEQASAAL-----------------NAAPRIGQ- 110 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCH-H-------HHHHHHHHHHHHHHHH-----------------Hhcccccc-
Confidence 578876 5889999999999999998863 2 4666666666655433 22111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh-hCCCCCh
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLL-DNDELSP 199 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlL-dNd~Ldp 199 (576)
. ..--+||..+=.-+..-=-.++-|+=.+..=..+....|..+++.|++-..-=..-|..+|++| +++...+
T Consensus 111 -~--Lrede~L~siRQR~~iPGG~C~FDLP~yh~Wl~~p~~~R~~dl~~W~~~l~pl~~al~l~L~LlR~sg~~~~ 183 (250)
T PRK05287 111 -S--LREDRFLSSIRQRLSIPGGCCSFDLPALHAWLHLPQEQRQQDLQQWLAPLAPLRDALTLVLRLLRESGQFRK 183 (250)
T ss_pred -h--hhhhHHHHHHHHHhcCCCcccCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 1 1122355543222222222333333333222233334577788888888888888888999998 4444433
No 120
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=68.54 E-value=1.3e+02 Score=29.89 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=22.0
Q ss_pred hhhCCCCChhhhhhhhHHHHHHHHhC
Q 008136 191 LLDNDELSPEQVNDVKDLLEDYVERN 216 (576)
Q Consensus 191 lLdNd~Ldpe~V~dIKEdIeyYVE~n 216 (576)
.|....+||..+..|...|+..+++-
T Consensus 169 vl~~~nldp~~~~~v~~~l~~~l~~K 194 (201)
T PF13851_consen 169 VLAAANLDPAALSQVSKKLEDVLDSK 194 (201)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45667799999999999999999774
No 121
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.25 E-value=42 Score=34.57 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=4.7
Q ss_pred ccccccccCC
Q 008136 108 KAFSKEGLGQ 117 (576)
Q Consensus 108 KafSKEGL~~ 117 (576)
+.+-++|+..
T Consensus 185 ~~L~~~g~is 194 (423)
T TIGR01843 185 RKLKEKGLVS 194 (423)
T ss_pred HHHHHcCCCC
Confidence 3344555554
No 122
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=68.17 E-value=77 Score=39.71 Aligned_cols=61 Identities=10% Similarity=0.144 Sum_probs=39.8
Q ss_pred hhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhccc
Q 008136 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69 (576)
Q Consensus 7 LQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasn 69 (576)
-+.|.+.+++.|.|-...=.++++|-+.+--.. +.+-..+.+-++.|+.|=.||+.++...
T Consensus 1427 ~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a--~as~~q~~~s~~el~~Li~~v~~Flt~~ 1487 (1758)
T KOG0994|consen 1427 KLAEAEQTLSMVREAKLSASEAQQSAQRALEQA--NASRSQMEESNRELRNLIQQVRDFLTQP 1487 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 357899999999999988888888866442211 1122233345666677777777777654
No 123
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=68.06 E-value=1.1e+02 Score=30.84 Aligned_cols=83 Identities=19% Similarity=0.192 Sum_probs=43.5
Q ss_pred cchhhhHHHHHHHHHHhHHhHHHHHH---HhhcCCChhhHHHHHHHHHHHHHHHHHhHHH-HHhhhcccchhhhhhhhhH
Q 008136 5 RKLQGEIDRVLKKVQEGVDVFDSIWN---KVYDTDNANQKEKFEADLKKEIKKLQRYRDQ-IKTWIQSSEIKDKKVSASY 80 (576)
Q Consensus 5 RKLQ~EIDr~LKKV~EGVe~Fd~iye---Kl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQ-IKtWlasneIKDK~~~a~~ 80 (576)
+||...+..+.+|-.+-.+..+++-. -+-+++|.+-+..|.+= =..+.++|-||+- +..- ....
T Consensus 21 ~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~l-ae~~~~i~d~~q~qv~~l-----------~~~v 88 (211)
T cd07598 21 GELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNF-AECLAALQDYRQAEVERL-----------EAKV 88 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-----------HHHH
Confidence 35556666666665554444444333 33355665555555442 2566666655542 1110 1223
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008136 81 EQALVDARKLIEREMERFK 99 (576)
Q Consensus 81 ~~~L~E~RKlIE~~MErFK 99 (576)
..+|-+|-.+|=..|+.||
T Consensus 89 ~epLk~Y~~l~k~~k~~~K 107 (211)
T cd07598 89 VQPLALYGTICKHARDDLK 107 (211)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4466666667766666666
No 124
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=68.03 E-value=20 Score=33.68 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhhhhhhHHH
Q 008136 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLL 209 (576)
Q Consensus 131 ~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ld-pe~V~dIKEdI 209 (576)
++.=|.+++..+.+|+|.+-..+..- ..+|..+|++.-.++.....|.+.+.++--+ -++|..|++||
T Consensus 37 Trr~m~~A~~~v~kql~~vs~~l~~t-----------KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv 105 (126)
T PF07889_consen 37 TRRSMSDAVASVSKQLEQVSESLSST-----------KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDV 105 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34457889999999999988877654 3488888888888888888888888754322 23444444444
Q ss_pred HH
Q 008136 210 ED 211 (576)
Q Consensus 210 ey 211 (576)
++
T Consensus 106 ~~ 107 (126)
T PF07889_consen 106 DS 107 (126)
T ss_pred HH
Confidence 43
No 125
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=67.78 E-value=76 Score=26.94 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
+..+.++...+..++..|+..=+.+=.+++..
T Consensus 38 ~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~ 69 (127)
T smart00502 38 ADVEAQIKAAFDELRNALNKRKKQLLEDLEEQ 69 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444444444443
No 126
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=67.36 E-value=83 Score=36.40 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=29.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChh
Q 008136 164 RPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPE 200 (576)
Q Consensus 164 ~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe 200 (576)
...|+.+++..+++.+--..-...||--|.||.+...
T Consensus 120 qEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~S 156 (617)
T PF15070_consen 120 QEERLAELEEELERLQEQQEDRQKLLEQLQSDKATAS 156 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH
Confidence 3568889999988888777777778888888888743
No 127
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=66.60 E-value=2.6e+02 Score=33.31 Aligned_cols=54 Identities=24% Similarity=0.403 Sum_probs=33.4
Q ss_pred chhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHH---HHHHHHHHHhHHH
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADL---KKEIKKLQRYRDQ 61 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DL---KKEIKKLQRlRDQ 61 (576)
+++.+|.++..+..+....|+.+.+.+....+ .++.++..| +.++++|++...+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 386 QLEEAIQELKEELAELSAALEEIQEELEELEK--ELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777655443 234444433 4466666666555
No 128
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=66.60 E-value=1.4e+02 Score=30.50 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHH
Q 008136 38 ANQKEKFEADLKKEIKKLQRYRDQIK 63 (576)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQRlRDQIK 63 (576)
+++...+-..|..+|++|.++++-.|
T Consensus 73 a~~H~~ia~~L~~~~~~l~~f~~~qk 98 (242)
T cd07671 73 GNSHIQLAGMLREELKSLEEFRERQK 98 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666665554433
No 129
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=66.26 E-value=1.5e+02 Score=33.66 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=11.1
Q ss_pred HHHHHHHHhH---HhHHHHHHHhh
Q 008136 13 RVLKKVQEGV---DVFDSIWNKVY 33 (576)
Q Consensus 13 r~LKKV~EGV---e~Fd~iyeKl~ 33 (576)
-+||||+.-. +..-.+|++.+
T Consensus 104 tLlkkiqal~keketla~~Ye~ee 127 (552)
T KOG2129|consen 104 TLLKKIQALFKEKETLATVYEVEE 127 (552)
T ss_pred HHHHHHHHhhccccccchhhhhhh
Confidence 4677776432 23334566655
No 130
>PF13514 AAA_27: AAA domain
Probab=65.37 E-value=2.1e+02 Score=34.73 Aligned_cols=33 Identities=12% Similarity=0.375 Sum_probs=25.2
Q ss_pred cchhhhHHHHHH------HHHHhHHhHHHHHHHhhcCCC
Q 008136 5 RKLQGEIDRVLK------KVQEGVDVFDSIWNKVYDTDN 37 (576)
Q Consensus 5 RKLQ~EIDr~LK------KV~EGVe~Fd~iyeKl~~a~n 37 (576)
.+|.+|.|.+|| .|+.-+..|+++-.++.....
T Consensus 133 ~~L~~ea~~Lfkprg~~~~in~~l~~l~e~~~~l~~~~~ 171 (1111)
T PF13514_consen 133 KQLDKEADELFKPRGRKPEINQALKELKELERELREAEV 171 (1111)
T ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 567888888887 578888888888777776654
No 131
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=64.60 E-value=1.7e+02 Score=32.80 Aligned_cols=60 Identities=27% Similarity=0.444 Sum_probs=39.7
Q ss_pred cccchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHH------HHHHHHHHHHHhHHHH
Q 008136 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEA------DLKKEIKKLQRYRDQI 62 (576)
Q Consensus 3 a~RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~------DLKKEIKKLQRlRDQI 62 (576)
.+.||-.|-|+++.||.+-=++-|.+-.-+..-.----+-+||. .++||+||||.|=+..
T Consensus 211 ~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~e 276 (426)
T smart00806 211 SKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIE 276 (426)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35688899999999999988888887766654443333334432 4566666666554433
No 132
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=63.52 E-value=84 Score=31.96 Aligned_cols=79 Identities=20% Similarity=0.121 Sum_probs=48.3
Q ss_pred cchhhhHHHHHHHHHHhHHhHHHHHHHhh----------cCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhh
Q 008136 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVY----------DTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDK 74 (576)
Q Consensus 5 RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~----------~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK 74 (576)
+|+|+=....+|+|..--..|+.-+.+.. ...+..|-||+++-|+|...-+++.++.-+.
T Consensus 109 eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~keleK~~~K~~k~~~~~~~a~~~Y~~---------- 178 (242)
T cd07671 109 ERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQSEKSQNKAKQCRDAATEAERVYKQ---------- 178 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 34555555566777777777776664433 3344456677777777766666655544322
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 008136 75 KVSASYEQALVDARKLIEREMERF 98 (576)
Q Consensus 75 ~~~a~~~~~L~E~RKlIE~~MErF 98 (576)
+...|.+.|-.-|+.|+.+
T Consensus 179 -----~v~~l~~~~~~w~~~~~~~ 197 (242)
T cd07671 179 -----NIEQLDKARTEWETEHILT 197 (242)
T ss_pred -----HHHHHHHHHHHHHHHHHHH
Confidence 2235678888888888653
No 133
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=63.37 E-value=44 Score=39.05 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=10.4
Q ss_pred hhhhhhhHHHHHHH---HHHHHHHHH
Q 008136 73 DKKVSASYEQALVD---ARKLIEREM 95 (576)
Q Consensus 73 DK~~~a~~~~~L~E---~RKlIE~~M 95 (576)
||...+.++++|.| .|..+|.+.
T Consensus 486 DKq~l~~LEkrL~eE~~~R~~lEkQL 511 (697)
T PF09726_consen 486 DKQSLQQLEKRLAEERRQRASLEKQL 511 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444444433 334454433
No 134
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.09 E-value=1.5e+02 Score=33.63 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhH
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSF 149 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~ 149 (576)
+++|..+ ...|++|.++++.+
T Consensus 366 q~ekeat----qELieelrkelehl 386 (502)
T KOG0982|consen 366 QEEKEAT----QELIEELRKELEHL 386 (502)
T ss_pred HHhhHHH----HHHHHHHHHHHHHH
Confidence 4455555 33444444444443
No 135
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.05 E-value=1.1e+02 Score=31.81 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=9.8
Q ss_pred HHHHHHHHHhHHhHHH
Q 008136 12 DRVLKKVQEGVDVFDS 27 (576)
Q Consensus 12 Dr~LKKV~EGVe~Fd~ 27 (576)
=.+.|+|.+....||.
T Consensus 87 gea~~kla~a~~~~d~ 102 (248)
T cd07619 87 GETEDKLAQELILFEL 102 (248)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666666666664
No 136
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=62.83 E-value=28 Score=31.09 Aligned_cols=32 Identities=31% Similarity=0.521 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
|+...++.+||..-|+.|+.+++.++.++..+
T Consensus 81 E~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l 112 (126)
T TIGR00293 81 EKDAEEAIEFLKKRIEELEKAIEKLQEALAEL 112 (126)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778999999999999999999999998776
No 137
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=62.13 E-value=1.5e+02 Score=29.65 Aligned_cols=47 Identities=13% Similarity=0.259 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHHhCCCCccccCCccccccCC
Q 008136 182 IMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLL 233 (576)
Q Consensus 182 I~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~nqdDF~E~~dde~iYd~L 233 (576)
+.++..+...+.. ++-+.|.-+|+-|--|...-.+-.. .++.+|++|
T Consensus 181 ~~~m~~~~~~~Q~--lEe~Ri~~~k~~l~~y~~~~~~~~~---~~~~~~e~~ 227 (261)
T cd07648 181 ETKMTDSCKRFQE--IEESHLRQMKEFLASYAEVLSENHS---AVGQVHEEF 227 (261)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccc---hHHHHHHHH
Confidence 5677777766665 7888999999999999866433111 234667664
No 138
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=61.91 E-value=47 Score=33.57 Aligned_cols=44 Identities=23% Similarity=0.374 Sum_probs=30.8
Q ss_pred HHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHH---HHHHHHHHHHHHhHH
Q 008136 13 RVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFE---ADLKKEIKKLQRYRD 60 (576)
Q Consensus 13 r~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE---~DLKKEIKKLQRlRD 60 (576)
+.|..++++|..-++.++... ++=|+||. .+|.+|+|+-+++-|
T Consensus 19 r~L~~L~~dl~~~~~~~~~~e----~~~~~KY~~lR~ElI~ELkqsKklyd 65 (196)
T PF15272_consen 19 RALSDLNQDLRERDERYELQE----TSYKEKYQQLRQELINELKQSKKLYD 65 (196)
T ss_pred HHHHHHHHHHHHhhhHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777766654 45577776 478888888776655
No 139
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=61.46 E-value=2.4e+02 Score=30.49 Aligned_cols=171 Identities=17% Similarity=0.271 Sum_probs=95.7
Q ss_pred cchhhhHHHHHHHHHHhHHhHHHHHHHhhcCC----------------------ChhhHHHHHHHHHHHHHHHHHhHHHH
Q 008136 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTD----------------------NANQKEKFEADLKKEIKKLQRYRDQI 62 (576)
Q Consensus 5 RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~----------------------n~nQKEKlE~DLKKEIKKLQRlRDQI 62 (576)
+-...|+++++++|.+-++........++.+- ..--++.-|.+|+||+.=|...++.+
T Consensus 56 ~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~li~~~~~lL 135 (384)
T PF03148_consen 56 RFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVELIENIKRLL 135 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34557899999999999988888777766221 11226677889999988777766666
Q ss_pred HhhhcccchhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhhhc---cccccccccCC--CCC-----CChhH------
Q 008136 63 KTWIQSSEIKDKKVSASYEQALVDARKLIEREM-ERFKICEKETK---TKAFSKEGLGQ--QPK-----TDPKE------ 125 (576)
Q Consensus 63 KtWlasneIKDK~~~a~~~~~L~E~RKlIE~~M-ErFK~vEKE~K---TKafSKEGL~~--~~K-----~DP~E------ 125 (576)
+.-+..-.- ....|.++|..+|..+ ++|.+++=... .+.+|....-. ..+ .+|.+
T Consensus 136 ~~~l~~~~e--------Ql~~lr~ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W~~~s~ 207 (384)
T PF03148_consen 136 QRTLEQAEE--------QLRLLRAARYRLEKDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNSSTPESWEEFSN 207 (384)
T ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccccCCChHHHHHHHH
Confidence 554443221 1236777788887665 24444443333 33334222111 111 12321
Q ss_pred -------H-------HHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008136 126 -------K-------AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRL 191 (576)
Q Consensus 126 -------k-------eK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRl 191 (576)
+ =|..+..=|..++..|..|.+..+.-+. .|+.+.+.......||..+.+.=+.-
T Consensus 208 ~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~-----------~Ri~et~~ak~~Le~ql~~~~~ei~~ 276 (384)
T PF03148_consen 208 ENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALR-----------KRIHETQEAKNELEWQLKKTLQEIAE 276 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 1 1223334445555555666555555442 35666666666666766666555544
Q ss_pred hhC
Q 008136 192 LDN 194 (576)
Q Consensus 192 LdN 194 (576)
+++
T Consensus 277 ~e~ 279 (384)
T PF03148_consen 277 MEK 279 (384)
T ss_pred HHH
Confidence 443
No 140
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=61.13 E-value=1.4e+02 Score=30.97 Aligned_cols=174 Identities=14% Similarity=0.235 Sum_probs=0.0
Q ss_pred ccchhhhHHHHHHHHHHh--HHhHHHHHHHhhcCCC--hhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhh
Q 008136 4 SRKLQGEIDRVLKKVQEG--VDVFDSIWNKVYDTDN--ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSAS 79 (576)
Q Consensus 4 ~RKLQ~EIDr~LKKV~EG--Ve~Fd~iyeKl~~a~n--~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~ 79 (576)
.++|+.=.-+.+++|.+| .=.|..-|+.|...+. +++.+.+-..|+.| .-+.|+.|+-..=.|...
T Consensus 39 ak~L~~Lakk~~~~~~~~~~~Gtl~~aw~~i~~etE~ia~~H~~la~~L~~e------~~e~~r~~qk~~~~k~~~---- 108 (258)
T cd07680 39 GQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELHQEVKNNLLNE------DLEKVKNWQKDAYHKQIM---- 108 (258)
T ss_pred HHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHH----
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHh----------hhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 008136 80 YEQALVDARKLIEREME--------RFKICEK----------ETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSE 141 (576)
Q Consensus 80 ~~~~L~E~RKlIE~~ME--------rFK~vEK----------E~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~Ide 141 (576)
.-..-||.+|..|+ +||.||+ +.+.=..--.-......+.|++.+|. .+-++.
T Consensus 109 ---~~~ke~K~~e~~~~KaQK~~~k~~k~v~~sKk~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~------~~k~~k 179 (258)
T cd07680 109 ---GGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKL------QDKVDK 179 (258)
T ss_pred ---hhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHH------HHHHHH
Q ss_pred HHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHH
Q 008136 142 LESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDY 212 (576)
Q Consensus 142 L~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyY 212 (576)
....++..+.+++. .|+..-.-+......++.+...+.. ++-+.|.-+++.+-.|
T Consensus 180 ~~~~~~~sk~~Y~~--------------~l~~ln~~~~~y~~~m~~vfd~~Q~--~Ee~Ri~flk~~l~~~ 234 (258)
T cd07680 180 CKQDVQKTQEKYEK--------------VLDDVGKTTPQYMENMEQVFEQCQQ--FEEKRLVFLKEVLLDI 234 (258)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
No 141
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=61.12 E-value=2.8e+02 Score=31.09 Aligned_cols=71 Identities=25% Similarity=0.262 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHH
Q 008136 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 209 (576)
Q Consensus 130 E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdI 209 (576)
.-++.+++-|..|+.||+.+.+|+..+ -.++....+.++-|...|+..+..+-.- -+++.-+..++
T Consensus 281 ~E~~~~~ee~~~l~~Qi~~l~~e~~d~-----------e~~~~~~~~~~~~~~~~~~~~~~~~~~~---e~e~~l~~~el 346 (511)
T PF09787_consen 281 QERDHLQEEIQLLERQIEQLRAELQDL-----------EAQLEGEQESFREQPQELSQQLEPELTT---EAELRLYYQEL 346 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhHHHHHHHHHHHHHHHHHHHhch---HHHHHHHHHHH
Confidence 345677889999999999999988655 2244455566666666666655444332 34444455555
Q ss_pred HHHHH
Q 008136 210 EDYVE 214 (576)
Q Consensus 210 eyYVE 214 (576)
.+|-+
T Consensus 347 ~~~~e 351 (511)
T PF09787_consen 347 YHYRE 351 (511)
T ss_pred HHHHH
Confidence 55543
No 142
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=61.09 E-value=38 Score=38.74 Aligned_cols=53 Identities=11% Similarity=0.334 Sum_probs=32.2
Q ss_pred HHhhh--ccccccccccCCCCC------CChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHh
Q 008136 101 CEKET--KTKAFSKEGLGQQPK------TDPKEKAKSETRDWLNNLVSELESQIDSFEAEL 153 (576)
Q Consensus 101 vEKE~--KTKafSKEGL~~~~K------~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEi 153 (576)
..+++ +..-|-+-.|..+-+ ...-..-|.+...|...-|.+++.+.+..-.+.
T Consensus 231 ~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~ 291 (546)
T KOG0977|consen 231 ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQ 291 (546)
T ss_pred HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchh
Confidence 34444 555666666654321 112234677888999999999997665544443
No 143
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=60.77 E-value=43 Score=31.95 Aligned_cols=68 Identities=22% Similarity=0.291 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHhhhhhcccCC---------CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 008136 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGK---------TRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS 198 (576)
Q Consensus 131 ~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~K---------k~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ld 198 (576)
.++-|-+.+++...+++.+......++.+-.. ..+.++.++...|...=.|...||.|.|.|.+....
T Consensus 15 ~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~s 91 (157)
T PF04136_consen 15 ECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPGSS 91 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCCc
Confidence 33444444555555555555555555333221 134678899999999999999999999999987755
No 144
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=60.38 E-value=1.9e+02 Score=28.94 Aligned_cols=72 Identities=25% Similarity=0.309 Sum_probs=50.8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhccc--chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008136 35 TDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS--EIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTK 108 (576)
Q Consensus 35 a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasn--eIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTK 108 (576)
..|-..=-|.-++|.|-.|.|-.-|-.||.=+..+ +++++- -.+...+.+....|-.++..|-.-+|+.|..
T Consensus 38 ee~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~--K~l~~~i~~~~~~I~~~ik~~Ee~~k~~k~~ 111 (215)
T PF07083_consen 38 EENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKI--KELIAPIDEASDKIDEQIKEFEEKEKEEKRE 111 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444677899999999999998888766655 333221 2456678888889999998887777766643
No 145
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=60.20 E-value=2.9e+02 Score=35.00 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=40.5
Q ss_pred cchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcc
Q 008136 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS 68 (576)
Q Consensus 5 RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlas 68 (576)
++||.||...-.+|.|-.+-|-..-..++.+-. -+|+++++=-.+++=.|..|.+|..|.+.
T Consensus 888 ~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s--~~e~~k~~~~~~~~~aqk~~~~ine~~s~ 949 (1294)
T KOG0962|consen 888 EELSEEITRLDSKVKELLERIQPLKVELEEAQS--EKEELKNERNTSEKLAQKKRNDINEKVSL 949 (1294)
T ss_pred HHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888888877665544433322 23333333222677788888888888654
No 146
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=60.11 E-value=2e+02 Score=31.87 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=18.9
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 008136 166 PRLTHLETSITRHKAHIMKLE 186 (576)
Q Consensus 166 ~rl~eLe~~ieRhk~HI~kLE 186 (576)
+|.-++.+.||..+-||.|||
T Consensus 298 eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 298 ERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 566799999999999999999
No 147
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=59.78 E-value=37 Score=39.88 Aligned_cols=22 Identities=50% Similarity=0.616 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhH
Q 008136 38 ANQKEKFEADLKKEIKKLQRYR 59 (576)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQRlR 59 (576)
-+-|||.|..|+|+|||-||-.
T Consensus 291 E~~kekee~Klekd~KKqqkek 312 (811)
T KOG4364|consen 291 ENNKEKEETKLEKDIKKQQKEK 312 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3458999999999999998653
No 148
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=59.26 E-value=81 Score=30.28 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=14.1
Q ss_pred HHHHHHHHHH-HhHHHHHhhhc
Q 008136 47 DLKKEIKKLQ-RYRDQIKTWIQ 67 (576)
Q Consensus 47 DLKKEIKKLQ-RlRDQIKtWla 67 (576)
.|+.||.||. ++|+.|..--+
T Consensus 84 ~L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 84 KLQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777774 77777766544
No 149
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.50 E-value=4.3e+02 Score=32.44 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=20.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008136 166 PRLTHLETSITRHKAHIMKLELILRLLDN 194 (576)
Q Consensus 166 ~rl~eLe~~ieRhk~HI~kLE~lLRlLdN 194 (576)
..|+.+...+++..-.|..|-.-|+-+.+
T Consensus 472 t~ie~~~~q~e~~isei~qlqarikE~q~ 500 (1118)
T KOG1029|consen 472 TEIEEVTKQRELMISEIDQLQARIKELQE 500 (1118)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34777777888887777777666655543
No 150
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=58.22 E-value=61 Score=37.29 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhh
Q 008136 127 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVK 206 (576)
Q Consensus 127 eK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIK 206 (576)
++..-.+=|...|++|..+++.++.+++.+...-+. -...+.+.+..++++.--..-.+.++.+|.+..-..++++.+-
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q-~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v 403 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQ-LEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALV 403 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 344455667888999999999999999888543222 1122334444455555555555666666666554444444443
Q ss_pred HH
Q 008136 207 DL 208 (576)
Q Consensus 207 Ed 208 (576)
+.
T Consensus 404 ~~ 405 (594)
T PF05667_consen 404 EA 405 (594)
T ss_pred HH
Confidence 33
No 151
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.16 E-value=3.7e+02 Score=31.66 Aligned_cols=41 Identities=12% Similarity=0.264 Sum_probs=26.7
Q ss_pred HHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHH
Q 008136 13 RVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQ 61 (576)
Q Consensus 13 r~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQ 61 (576)
.||.-....+++|.+-|=+.+ ++.-.++.+-|+-|||..||
T Consensus 559 E~~~lL~~a~~vfrEqYi~~~--------dlV~~e~qrH~~~l~~~k~~ 599 (741)
T KOG4460|consen 559 ECLQLLSRATQVFREQYILKQ--------DLVKEEIQRHVKLLCDQKKK 599 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 355556677888888777663 45566667777777755443
No 152
>PRK09793 methyl-accepting protein IV; Provisional
Probab=57.92 E-value=1.2e+02 Score=33.39 Aligned_cols=65 Identities=9% Similarity=0.326 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhh
Q 008136 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTD-NANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKD 73 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~-n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKD 73 (576)
.++.+++..+.+.++.++..|+++.... .......+-.+|++..+.+.+..+++..|+..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 146 (533)
T PRK09793 81 DDIKTLMTTARASLTQSTTLFKSFMAMTAGNEHVRALQKETEKSFARWHNDLEHQATWLESNQLSD 146 (533)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 4577889999999999999999998653 3344446667888888888888899999988877753
No 153
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=57.90 E-value=2.5e+02 Score=34.06 Aligned_cols=167 Identities=19% Similarity=0.285 Sum_probs=86.0
Q ss_pred HHHHHHHHHhHHh---------HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhccc--chhhhhhhhhH
Q 008136 12 DRVLKKVQEGVDV---------FDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS--EIKDKKVSASY 80 (576)
Q Consensus 12 Dr~LKKV~EGVe~---------Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasn--eIKDK~~~a~~ 80 (576)
|..-+|+.+|++. .+.-|..+.. .+.|-|+.||+- -.+-+||+--=.-|-.|+.-- +|++--
T Consensus 54 ~~~~~kl~~~l~~~~~~~~l~~mn~~w~~l~k-ks~~ir~~lea~-~~~w~kl~~~l~el~~wl~~kd~el~~q~----- 126 (966)
T KOG4286|consen 54 DENSQKILRSLEGSDDAVLLQLMNFKWSELRK-KSLNIRSHLEAS-SDQWKRLHLSLQELLVWLQLKDDELSRQA----- 126 (966)
T ss_pred chHHHHHHHHhcCCccchHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHhhhHHHHhcC-----
Confidence 3455666665542 3344555432 234456666653 234566665555566687643 333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccc----------------cccC-CCCCCChhHHHHHHHHHHHHHHHHHHH
Q 008136 81 EQALVDARKLIEREMERFKICEKETKTKAFSK----------------EGLG-QQPKTDPKEKAKSETRDWLNNLVSELE 143 (576)
Q Consensus 81 ~~~L~E~RKlIE~~MErFK~vEKE~KTKafSK----------------EGL~-~~~K~DP~EkeK~E~~~WL~~~IdeL~ 143 (576)
++.----.+-.+-+-.|++-||.|+|.|+- |++. .+.+.+..++++. .+.-.-|+
T Consensus 127 --p~ggd~~avq~q~~~~~a~~re~k~k~~~~~s~~e~a~~fl~~~p~e~~e~~~~~~e~~p~~r~------q~~~r~~~ 198 (966)
T KOG4286|consen 127 --PIGGDFPAVQKQNDVHRAFKRELKTKEPVIMSTLETARIFLTEQPLEGLEKYQEPRELPPEERA------QNVTRLLR 198 (966)
T ss_pred --CCCCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhcCCCcchhhcCCcccCCHHHHH------HHHHHHHH
Confidence 222223356667788899999999998864 2221 1111111122222 22333344
Q ss_pred HhHhhHHHHhhhhh------cccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008136 144 SQIDSFEAELEGLT------VKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD 193 (576)
Q Consensus 144 ~QiE~~EaEiE~Ls------~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLd 193 (576)
+|-+....+-|+|. .|+--+.-+|+.+|+..++....|+..-|.+..-.+
T Consensus 199 kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~l~~ae~~~~~w~ 254 (966)
T KOG4286|consen 199 KQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEVIKGSWQ 254 (966)
T ss_pred HHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccc
Confidence 44444444444442 121112235677788888888888777777654443
No 154
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=57.59 E-value=2.8e+02 Score=30.01 Aligned_cols=41 Identities=10% Similarity=0.235 Sum_probs=18.8
Q ss_pred HHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHH
Q 008136 15 LKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIK 63 (576)
Q Consensus 15 LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIK 63 (576)
...+.+-...+++++.++.. .+..-|...-.+|++++..+.
T Consensus 259 ~~~~~e~~q~Ld~l~~rL~~--------a~~~~L~~~~~~L~~L~~rL~ 299 (438)
T PRK00286 259 VPDRAELLQRLQQLQQRLAR--------AMRRRLEQKRQRLDQLARRLK 299 (438)
T ss_pred CccHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhc
Confidence 33444445555555555532 233334444444555444443
No 155
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=57.35 E-value=66 Score=33.04 Aligned_cols=81 Identities=20% Similarity=0.178 Sum_probs=54.5
Q ss_pred hhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHh----HHHHHhhhcccchhhhhhhhhHHH
Q 008136 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRY----RDQIKTWIQSSEIKDKKVSASYEQ 82 (576)
Q Consensus 7 LQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRl----RDQIKtWlasneIKDK~~~a~~~~ 82 (576)
-+.||||+..|+.-.-+.|....+++... +.+|+.+++.-.+++|.+ -+.+|.|+..-----..+..++..
T Consensus 155 t~k~leK~~~k~~ka~~~Y~~~v~~l~~~-----~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~~~~~~~ 229 (269)
T cd07673 155 TQREIEKAAVKSKKATESYKLYVEKYALA-----KADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKEIHIQIGQ 229 (269)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 46789999888888888888888887533 559999999999999876 356777665431111122234444
Q ss_pred HHHHHHHHHH
Q 008136 83 ALVDARKLIE 92 (576)
Q Consensus 83 ~L~E~RKlIE 92 (576)
.+.+-|+.||
T Consensus 230 ~~e~ir~~le 239 (269)
T cd07673 230 VHEEFINNMA 239 (269)
T ss_pred HHHHHHHHHH
Confidence 5666666665
No 156
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=57.30 E-value=32 Score=31.47 Aligned_cols=57 Identities=23% Similarity=0.277 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHh-HHHHHhhhcc
Q 008136 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRY-RDQIKTWIQS 68 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRl-RDQIKtWlas 68 (576)
..|...|-.|.+|+..-+.+++|+.-+-..=+||| ++-+|+||.-+- =-+||.|+-.
T Consensus 21 k~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~reR---e~dee~k~~n~Knir~~KmwilG 78 (98)
T PF11166_consen 21 KTIFNKLDEIKDGQHDQELVNQKLDRTLDEINRER---EEDEENKKKNDKNIRDIKMWILG 78 (98)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHH
Confidence 46788899999999999999999965544445653 445566555432 3468999754
No 157
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=57.11 E-value=50 Score=29.42 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=38.0
Q ss_pred hhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChh-hHHHHHHHHH
Q 008136 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNAN-QKEKFEADLK 49 (576)
Q Consensus 7 LQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~n-QKEKlE~DLK 49 (576)
++.|||++=+|+..+..-.+.|-.|++...-+. +|+.+|.++.
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~ 46 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELN 46 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHH
Confidence 578999999999999999999999999998766 8999996543
No 158
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=57.10 E-value=2.7e+02 Score=31.68 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhHhhHHHHhhhhhcc
Q 008136 132 RDWLNNLVSELESQIDSFEAELEGLTVK 159 (576)
Q Consensus 132 ~~WL~~~IdeL~~QiE~~EaEiE~Ls~K 159 (576)
.+=|..++.=|+.|++.|+..++.+...
T Consensus 135 ~~~l~~ll~Pl~e~l~~f~~~v~~~~~~ 162 (475)
T PRK10361 135 RQSLNSLLSPLREQLDGFRRQVQDSFGK 162 (475)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3455777888888888888888877443
No 159
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=56.92 E-value=85 Score=28.95 Aligned_cols=86 Identities=19% Similarity=0.262 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHH-HHH
Q 008136 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQAL-VDA 87 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L-~E~ 87 (576)
.+|.++.||...-...||....|+..+.....+..-|.+|..--.++..++++++.++..=- ++. ...| .-.
T Consensus 131 ~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~l~~~l~~l~--~~~-----~~~l~~~l 203 (229)
T PF03114_consen 131 KEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSKEEKLEEAKEEFEALNEELKEELPKLF--AKR-----QDILEPCL 203 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCH-----HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-----HHHHHHHH
Confidence 46777777878888888888888877654333222277777777888888888888776532 111 0122 334
Q ss_pred HHHHHHHHHHHHHH
Q 008136 88 RKLIEREMERFKIC 101 (576)
Q Consensus 88 RKlIE~~MErFK~v 101 (576)
..+|+.++.=|+.|
T Consensus 204 ~~~i~~q~~~~~~~ 217 (229)
T PF03114_consen 204 QSFIEAQLQYFQQL 217 (229)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44666666555444
No 160
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=56.87 E-value=21 Score=30.41 Aligned_cols=58 Identities=19% Similarity=0.388 Sum_probs=35.3
Q ss_pred chhhhHHHHHHHHHHhHHhHHHH-HHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHH
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSI-WNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIK 63 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~i-yeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIK 63 (576)
.++.++-.++|.+.+.|..+..+ +....+...--++|||-.|++.-++.+|+.-..+.
T Consensus 37 ~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~~ 95 (102)
T PF14523_consen 37 QLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEFQKAQRRYA 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666554 11111111234699999999999999987765543
No 161
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=56.79 E-value=33 Score=33.60 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=35.1
Q ss_pred HHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008136 54 KLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKT 107 (576)
Q Consensus 54 KLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KT 107 (576)
.++++..+|+.+...-+.|+-+ .++| .|+-+|+-||+-|.+-..+|--.+-
T Consensus 93 ~~~~l~~ri~eLe~~l~~kad~-vvsY--qll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 93 QLNTITRRLDELERQLQQKADD-VVSY--QLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhhH--HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555556444 3555 7999999999999999888876653
No 162
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.58 E-value=2.2e+02 Score=31.23 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=11.6
Q ss_pred hhhhhhhHHHHHHHHhCC
Q 008136 200 EQVNDVKDLLEDYVERNQ 217 (576)
Q Consensus 200 e~V~dIKEdIeyYVE~nq 217 (576)
.+..+++..+..|.+.+-
T Consensus 464 ~~~~d~~~~~~~~~d~~i 481 (503)
T KOG2273|consen 464 SRRQDFKESLKKYADLHV 481 (503)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666777776653
No 163
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=56.41 E-value=1.9e+02 Score=27.61 Aligned_cols=39 Identities=26% Similarity=0.368 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccc-hhhhhh
Q 008136 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSE-IKDKKV 76 (576)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasne-IKDK~~ 76 (576)
.+|.+++..-++..+..|+-+...|...+..++ .|+|..
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~l~~ai~~~~~~~~~LkGka~ 48 (204)
T PF04740_consen 9 HSQAESTNSSLKELKEQLESLQKAINQFISSESSLKGKAY 48 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHH
Confidence 467888899999999999999999999999999 999883
No 164
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=56.36 E-value=1.7e+02 Score=34.37 Aligned_cols=50 Identities=30% Similarity=0.328 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHH-------HHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008136 41 KEKFEADLKKEIKKL-------QRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERF 98 (576)
Q Consensus 41 KEKlE~DLKKEIKKL-------QRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErF 98 (576)
..|||+|+||==--| |.||.||-...+ +|---|. .|...|+-.|.-.-++
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~-~Er~lk~-------eL~qlr~ene~Lq~Kl 476 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTN-NERSLKS-------ELSQLRQENEQLQNKL 476 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc-cchHHHH-------HHHHHHHHHHHHHHHH
Confidence 457777766522222 457788876655 3433344 6666666666544444
No 165
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=56.29 E-value=3.5e+02 Score=30.73 Aligned_cols=26 Identities=8% Similarity=0.290 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhHHHHHhhhcccchh
Q 008136 47 DLKKEIKKLQRYRDQIKTWIQSSEIK 72 (576)
Q Consensus 47 DLKKEIKKLQRlRDQIKtWlasneIK 72 (576)
-|.+.++.|...-++...|..+.|.-
T Consensus 165 ~Le~~L~~ie~~F~~f~~lt~~GD~~ 190 (560)
T PF06160_consen 165 ELEKQLENIEEEFSEFEELTENGDYL 190 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 47778888888899999999987643
No 166
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=56.23 E-value=1.3e+02 Score=29.18 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=41.9
Q ss_pred HHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHH
Q 008136 13 RVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIE 92 (576)
Q Consensus 13 r~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE 92 (576)
.+.-.|-+=...|+.+|+.+..+-+...||+ ||+-|.+|| ++|..+...- ..+...|.+.|..+.
T Consensus 77 ~~~~~I~~Y~~~f~syY~~L~~~id~~~~~~----~~~~i~~L~---~~i~~~q~~~--------~~~i~~L~~f~~~l~ 141 (184)
T PF05791_consen 77 DLNQDIINYNTTFQSYYDTLVEAIDQKDKED----LKEIIEDLQ---DQIQKNQDKV--------QALINELNDFKDKLQ 141 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-HHH----HHHHHHHHH---HHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcccHHH----HHHHHHHHH---HHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 3444444444556888888877764444554 455555553 4555544332 233446777777777
Q ss_pred HHHHHHHHH
Q 008136 93 REMERFKIC 101 (576)
Q Consensus 93 ~~MErFK~v 101 (576)
..-..|+..
T Consensus 142 ~D~~~l~~~ 150 (184)
T PF05791_consen 142 KDSRNLKTD 150 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777543
No 167
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=56.07 E-value=1.9e+02 Score=29.59 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=22.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhh
Q 008136 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELE 154 (576)
Q Consensus 121 ~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE 154 (576)
..|.-+++.+..+-...-++.|+.+++...++++
T Consensus 180 ~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 180 KGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3577777666666666777777777666655554
No 168
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=55.96 E-value=26 Score=30.24 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHhHHh----HHHH---HHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHh
Q 008136 10 EIDRVLKKVQEGVDV----FDSI---WNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKT 64 (576)
Q Consensus 10 EIDr~LKKV~EGVe~----Fd~i---yeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKt 64 (576)
....+||.+.+-+.. |..+ |.++..+.+..+|+.|+.+|++=+|+|-.--|||..
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~ 75 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555543 3334 777778888899999999999999999999999965
No 169
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=55.88 E-value=1.2e+02 Score=36.01 Aligned_cols=129 Identities=15% Similarity=0.213 Sum_probs=73.1
Q ss_pred HHHHhHHHHHhhhcccchh-----------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCC
Q 008136 54 KLQRYRDQIKTWIQSSEIK-----------DKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTD 122 (576)
Q Consensus 54 KLQRlRDQIKtWlasneIK-----------DK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~D 122 (576)
+|++-+|.++.-+..+|.. ||. ...+.+.+...||.||..--++..+.++-| ++-|.+.....++.
T Consensus 556 el~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq-~k~lenk~~~LrKqvEnk~K~ieeLqqeNk--~LKKk~~aE~kq~~ 632 (786)
T PF05483_consen 556 ELKQKGEEVKCKLDKSEENARSIECEILKKEKQ-MKILENKCNNLRKQVENKNKNIEELQQENK--ALKKKITAESKQSN 632 (786)
T ss_pred HHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 3455677777776665443 333 578888899999999988877777777654 34444433211111
Q ss_pred -------hhHHHHHHHHHHHHHHHHHHHH-------hHhhHHHHhhhhhc-----ccCCC-----CCchhHHHHHHHHHH
Q 008136 123 -------PKEKAKSETRDWLNNLVSELES-------QIDSFEAELEGLTV-----KKGKT-----RPPRLTHLETSITRH 178 (576)
Q Consensus 123 -------P~EkeK~E~~~WL~~~IdeL~~-------QiE~~EaEiE~Ls~-----KK~Kk-----~~~rl~eLe~~ieRh 178 (576)
--+.+-..+..-...+++.+.+ .-+.+..|++++.. -|.++ =+.+|++.-+.+++|
T Consensus 633 ~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKH 712 (786)
T PF05483_consen 633 VYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKH 712 (786)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 0011111122222223333333 33445555555521 12222 146799999999999
Q ss_pred HHHHHHH
Q 008136 179 KAHIMKL 185 (576)
Q Consensus 179 k~HI~kL 185 (576)
+.|..++
T Consensus 713 K~qYDki 719 (786)
T PF05483_consen 713 KHQYDKI 719 (786)
T ss_pred HHHHHHH
Confidence 9999987
No 170
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=55.80 E-value=18 Score=39.99 Aligned_cols=125 Identities=16% Similarity=0.193 Sum_probs=77.0
Q ss_pred HhHHhHHHHHHHhhcCCC---------hhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHH
Q 008136 20 EGVDVFDSIWNKVYDTDN---------ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKL 90 (576)
Q Consensus 20 EGVe~Fd~iyeKl~~a~n---------~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKl 90 (576)
|++..=++||+.+-..-- .+==+++-.||++.|+| .+++.-+.
T Consensus 75 g~l~~n~~iw~~~~ew~y~~~~~~~v~s~~l~~f~~~~~~li~k----------------------------~il~~f~k 126 (420)
T PTZ00473 75 GDLKKNDDIWKDFVEWFYNKQEKFDVFSNHLESFNYDFEYLIQK----------------------------NILKNFNK 126 (420)
T ss_pred ccccchhHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHHH----------------------------HhhhhHhh
Confidence 555555666666543322 22256666777777654 45555567
Q ss_pred HHHHHHHHHHHHhhhccccccccc-----cCCCCCCChhHHHHHHHHHHHHHHHHHHHHhH-hhHHHHhhhhhcccCCCC
Q 008136 91 IEREMERFKICEKETKTKAFSKEG-----LGQQPKTDPKEKAKSETRDWLNNLVSELESQI-DSFEAELEGLTVKKGKTR 164 (576)
Q Consensus 91 IE~~MErFK~vEKE~KTKafSKEG-----L~~~~K~DP~EkeK~E~~~WL~~~IdeL~~Qi-E~~EaEiE~Ls~KK~Kk~ 164 (576)
++.--|.++++|..||-=-|+.-. |+. .+........|+|+++|||--++=+ +.+... -+....
T Consensus 127 fk~~~~~~~e~e~ImKL~yFteNig~Ik~lm~----~~~~~~y~s~C~fvn~CidIYrk~i~~~Cs~~------~~~~~s 196 (420)
T PTZ00473 127 FKKLYENNYELEDIMKLFYFTENVGDIKSLMG----APDNEHYASSCKFVNDCLDIYRKYKDEKCSGN------SYNTFR 196 (420)
T ss_pred cccccccchhHHHHHHHHHHHhhhHHHHHHhc----CCcchhHHHHHHHHHHHHHHHHHHHHhhcCCc------CCCCCC
Confidence 777778888888888877776422 332 3455667889999999999998887 333332 122222
Q ss_pred -CchhHHHHHHHHHHHHHH
Q 008136 165 -PPRLTHLETSITRHKAHI 182 (576)
Q Consensus 165 -~~rl~eLe~~ieRhk~HI 182 (576)
..==.||....+..+.|+
T Consensus 197 ~st~C~EL~~F~D~Yd~~m 215 (420)
T PTZ00473 197 GSTICNELNNFFDKYKEHL 215 (420)
T ss_pred ccHHHHHHHHHHHHHHhhc
Confidence 222446777777766664
No 171
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=55.64 E-value=4.2e+02 Score=31.45 Aligned_cols=210 Identities=20% Similarity=0.245 Sum_probs=123.8
Q ss_pred cchhhhHHHHHHHHHHhHHhHHHHHHHhh---------------cCCC--------------hhhHHHHHHHHHHHHHHH
Q 008136 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVY---------------DTDN--------------ANQKEKFEADLKKEIKKL 55 (576)
Q Consensus 5 RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~---------------~a~n--------------~nQKEKlE~DLKKEIKKL 55 (576)
.-||.|...=|+||.+=+..-..+|+-|- +..+ +.+.++|+++=++-+.||
T Consensus 170 ~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl 249 (660)
T KOG4302|consen 170 NELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKL 249 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999988877666665432 2222 345788888889999999
Q ss_pred HHhHHHHHhhhcccchhhhhhh----------hhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--cc----ccCCCC
Q 008136 56 QRYRDQIKTWIQSSEIKDKKVS----------ASYEQALVDARKLIEREMERFKICEKETKTKAFS--KE----GLGQQP 119 (576)
Q Consensus 56 QRlRDQIKtWlasneIKDK~~~----------a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafS--KE----GL~~~~ 119 (576)
|-+|++|-..-...++-+-... -.+...=.|..+.+|.+|+|+-.+ |..++|.|= +. =|-...
T Consensus 250 ~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~~ls~d~I~~ve~Ev~Rl~ql-K~s~mKeli~k~r~Eleel~~~~ 328 (660)
T KOG4302|consen 250 QDLRTKLLELWNLLDTSDEERQRFVHVTESEATEPNSLSLDIIEQVEKEVDRLEQL-KASNMKELIEKKRSELEELWRLL 328 (660)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHccccHHHhhccccccHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999887666554432200 011122256778888998887655 333344431 10 000000
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCC-----C----CC---chhHHHHHHHH-----------
Q 008136 120 KTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGK-----T----RP---PRLTHLETSIT----------- 176 (576)
Q Consensus 120 K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~K-----k----~~---~rl~eLe~~ie----------- 176 (576)
-+.. +-...+.|+..+||.-..++..+=+.+|.+-.+-+. + +. ....+.+.+++
T Consensus 329 h~s~---~~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~keea~srk~il~~ve~W~sa~EeE~~lee~n~D~nR~~~ 405 (660)
T KOG4302|consen 329 HYSE---ENESRRRFITYLIDSGTEDVLELLENIDNLIKKYKEEALSRKEILERVEKWESACEEESWLEEYNRDSNRYNA 405 (660)
T ss_pred hccc---cHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccchhhhHhc
Confidence 0011 113455677777777666664433336665221110 1 00 11233334443
Q ss_pred HHHHH-HHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHHhCCCCc
Q 008136 177 RHKAH-IMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDF 220 (576)
Q Consensus 177 Rhk~H-I~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~nqdDF 220 (576)
.|.-| +-|=|...|.+-+- =|.-|+.|..-|..|-+.++-.|
T Consensus 406 ~Rg~h~lLkreekar~~vsK--lP~~~~~L~~k~~~wE~e~~~~F 448 (660)
T KOG4302|consen 406 GRGAHLLLKREEKARKLVSK--LPKMVEALTAKVTAWEEEKGRPF 448 (660)
T ss_pred cccchhHHHHHHHHHHHhhh--CchhhHHHHHHHHHHHHhcCCce
Confidence 35667 67778888888776 68888889999999987765544
No 172
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=55.61 E-value=67 Score=36.28 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 008136 80 YEQALVDARKLIEREMERFKICEKETKTKAFSKEGL 115 (576)
Q Consensus 80 ~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL 115 (576)
+..+|..+|+.+|..|.++-. ++-.-.|+|-++-+
T Consensus 326 l~sqleSqr~y~e~~~~e~~q-sqlen~k~~~e~~~ 360 (493)
T KOG0804|consen 326 LTSQLESQRKYYEQIMSEYEQ-SQLENQKQYYELLI 360 (493)
T ss_pred hhhhhhHHHHHHHHHHHHHHH-HHHHhHHHHHHHHH
Confidence 445899999999998888755 33334455555444
No 173
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=55.49 E-value=1e+02 Score=24.48 Aligned_cols=51 Identities=18% Similarity=0.393 Sum_probs=26.5
Q ss_pred HHHHHHhHHHHHhhhcccchh-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008136 52 IKKLQRYRDQIKTWIQSSEIK-DKKVSASYEQALVDARKLIEREMERFKICEKETKTKA 109 (576)
Q Consensus 52 IKKLQRlRDQIKtWlasneIK-DK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKa 109 (576)
..++++--+.+..|+...+-+ ... .....-.-|+..|.+|+.+++++..+.
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~-------~~~~~~~~~~~~~~~~~~~~~ei~~~~ 54 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSS-------EPGSDLEELEEQLKKHKELQEEIESRQ 54 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSC-------THSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCCHHHHHHHHHHHhhhhhHHHHHH
Confidence 344455555666676655333 111 001122356677777777777766543
No 174
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=55.13 E-value=2.3e+02 Score=28.36 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=51.1
Q ss_pred HhHHhHHHHHHHhhcCCC--hhhHHHHHHHHHHHHHHHHHhHHHHHh-hh-cccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 008136 20 EGVDVFDSIWNKVYDTDN--ANQKEKFEADLKKEIKKLQRYRDQIKT-WI-QSSEIKDKKVSASYEQALVDARKLIEREM 95 (576)
Q Consensus 20 EGVe~Fd~iyeKl~~a~n--~nQKEKlE~DLKKEIKKLQRlRDQIKt-Wl-asneIKDK~~~a~~~~~L~E~RKlIE~~M 95 (576)
.|++.+...++.+..... .++=+..+..|..|...-+++|.+..+ |- ..++.- .+.|...|..+|+.++.+.
T Consensus 22 ~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~----~~~l~~~l~~~~~~L~~A~ 97 (296)
T PF13949_consen 22 GGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSEL----NASLRKELQKYREYLEQAS 97 (296)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHH----CHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhh----HHHHHHHHHHHHHHHHHHH
Confidence 355566655555544332 334677888999999999999999864 63 333322 3457777888888888766
Q ss_pred HHHHHHH
Q 008136 96 ERFKICE 102 (576)
Q Consensus 96 ErFK~vE 102 (576)
+-.+.|-
T Consensus 98 ~sD~~~~ 104 (296)
T PF13949_consen 98 ESDSQLR 104 (296)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 5554443
No 175
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=55.04 E-value=1.9e+02 Score=27.39 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=17.8
Q ss_pred HHHHHHHHhHhhHHHHhhhhhccc
Q 008136 137 NLVSELESQIDSFEAELEGLTVKK 160 (576)
Q Consensus 137 ~~IdeL~~QiE~~EaEiE~Ls~KK 160 (576)
+=|+.|+..|+.|+++++.|..+|
T Consensus 109 ~dv~~L~~rId~L~~~v~~l~~~k 132 (132)
T PF05597_consen 109 KDVEALSARIDQLTAQVERLANKK 132 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 347788888888888888885543
No 176
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=53.94 E-value=55 Score=36.93 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=19.8
Q ss_pred HHHHhHHhHHHHHHHhhcCCChhhHHHHHH
Q 008136 17 KVQEGVDVFDSIWNKVYDTDNANQKEKFEA 46 (576)
Q Consensus 17 KV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~ 46 (576)
+++--...|++++.++..+.=.|||+.||.
T Consensus 329 qleSqr~y~e~~~~e~~qsqlen~k~~~e~ 358 (493)
T KOG0804|consen 329 QLESQRKYYEQIMSEYEQSQLENQKQYYEL 358 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445555667777777777666677777763
No 177
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=53.54 E-value=2.5e+02 Score=28.34 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhh
Q 008136 170 HLETSITRHKAHIMKLELILRLLDNDELSPEQVND 204 (576)
Q Consensus 170 eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~d 204 (576)
.+...+++|+.-|.++ |-.-|++ +|.+++++
T Consensus 302 ~l~~~v~~~~~~i~~~--V~~~l~~--~~~~~l~~ 332 (367)
T PF04286_consen 302 LLERIVESNHIDIGEI--VEEKLNS--LDDEELEE 332 (367)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHC--CCHHHHHH
Confidence 3445555555444433 3333322 55555544
No 178
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=53.42 E-value=15 Score=31.41 Aligned_cols=20 Identities=50% Similarity=0.538 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhHHHHHhh
Q 008136 46 ADLKKEIKKLQRYRDQIKTW 65 (576)
Q Consensus 46 ~DLKKEIKKLQRlRDQIKtW 65 (576)
.+||||||||+|.=-|.|.=
T Consensus 5 ~eLk~evkKL~~~A~~~kmd 24 (66)
T PF05082_consen 5 EELKKEVKKLNRKATQAKMD 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57999999999988888863
No 179
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=53.39 E-value=1.2e+02 Score=32.77 Aligned_cols=54 Identities=11% Similarity=0.139 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008136 46 ADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETK 106 (576)
Q Consensus 46 ~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~K 106 (576)
..+++++|+|+.+.+-||.--.+..-++++ .+.+.++.|.++=-.|.++|....
T Consensus 39 ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~-------~i~~L~~~Ik~r~~~l~DmEa~LP 92 (330)
T PF07851_consen 39 SSISHQKKRLKELKKSLKRCKKSLSAEERE-------LIEKLEEDIKERRCQLFDMEAFLP 92 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHH-------HHHHHHHHHHHHHhhHHHHHhhCC
Confidence 456777777888888777776554444555 677777777777777888886653
No 180
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=53.34 E-value=4.3e+02 Score=31.89 Aligned_cols=88 Identities=16% Similarity=0.294 Sum_probs=53.7
Q ss_pred HHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHH-HHHHHHHhhhCCCC--------------C---hhhhh
Q 008136 142 LESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIM-KLELILRLLDNDEL--------------S---PEQVN 203 (576)
Q Consensus 142 L~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~-kLE~lLRlLdNd~L--------------d---pe~V~ 203 (576)
++..+|.+.+|+.+. ++.... .=-++|+..|++.+--|. .||.+++.++=... + -+.|+
T Consensus 576 ~kek~ea~~aev~~~--g~s~~~-~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe 652 (762)
T PLN03229 576 IKEKMEALKAEVASS--GASSGD-ELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIE 652 (762)
T ss_pred HHHHHHHHHHHHHhc--CccccC-CCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHH
Confidence 788888888888762 222221 234577888888887777 67877775432111 1 34677
Q ss_pred hhhHHHHHHHHhCCCCccccCCccccccCCCCC
Q 008136 204 DVKDLLEDYVERNQDDFEEFSDVDELYHLLPLD 236 (576)
Q Consensus 204 dIKEdIeyYVE~nqdDF~E~~dde~iYd~L~Ld 236 (576)
.|.+.|..-|++--+ .. +--+.|+.|.++
T Consensus 653 ~L~~eIkkkIe~av~-ss---~LK~k~E~Lk~E 681 (762)
T PLN03229 653 SLNEEINKKIERVIR-SS---DLKSKIELLKLE 681 (762)
T ss_pred HHHHHHHHHHHHHhc-ch---hHHHHHHHHHHH
Confidence 777777777766433 11 234667777665
No 181
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=53.14 E-value=45 Score=32.47 Aligned_cols=27 Identities=26% Similarity=0.578 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhcc
Q 008136 42 EKFEADLKKEIKKLQRYRDQIKTWIQS 68 (576)
Q Consensus 42 EKlE~DLKKEIKKLQRlRDQIKtWlas 68 (576)
|+|..+.++||+||=++|.--|+..--
T Consensus 76 e~Y~~~a~~Em~KLi~yk~~aKsyAkk 102 (152)
T PF11500_consen 76 ESYHEKAEKEMEKLIKYKQLAKSYAKK 102 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677789999999999999888877644
No 182
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=53.05 E-value=1.3e+02 Score=26.68 Aligned_cols=23 Identities=43% Similarity=0.439 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 008136 83 ALVDARKLIEREMERFKICEKET 105 (576)
Q Consensus 83 ~L~E~RKlIE~~MErFK~vEKE~ 105 (576)
.|..-|.-|+..|+.|+.-|++.
T Consensus 15 ~l~~kr~e~~~~~~~~~~~e~~L 37 (126)
T PF13863_consen 15 ALDTKREEIERREEQLKQREEEL 37 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544443
No 183
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=52.63 E-value=1.1e+02 Score=27.40 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=9.7
Q ss_pred HHHHHHhHhhHHHHhhhhh
Q 008136 139 VSELESQIDSFEAELEGLT 157 (576)
Q Consensus 139 IdeL~~QiE~~EaEiE~Ls 157 (576)
|......++.+......|.
T Consensus 155 ~~~~~~~~~~~~~~~~~l~ 173 (213)
T cd00176 155 LEAHEPRLKSLNELAEELL 173 (213)
T ss_pred HHhchHHHHHHHHHHHHHH
Confidence 3344555555555555553
No 184
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=52.07 E-value=2.3e+02 Score=27.49 Aligned_cols=124 Identities=18% Similarity=0.168 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCC
Q 008136 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120 (576)
Q Consensus 41 KEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K 120 (576)
++|=+.+++-|++|.+.-.+.+-+=| ..|.++|..++.+|.-+ =.-|++.
T Consensus 14 ~~k~~e~a~~el~k~~~~~~~~~~qL---------------~~l~~y~~ey~q~~~~k------------~~~G~s~--- 63 (148)
T COG2882 14 AKKEEEEAAIELSKIRSEKENAEEQL---------------KMLSGYRNEYEQNLNEK------------LKSGVSA--- 63 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH------------HhccccH---
Confidence 77888888888888887777664432 36888999999888554 1223322
Q ss_pred CChhHH-HHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 008136 121 TDPKEK-AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS 198 (576)
Q Consensus 121 ~DP~Ek-eK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ld 198 (576)
.+- --..-...|...|+....++..++..+|..... =-.+.-+...++.+-+||+--....|.....-.||++.
T Consensus 64 ---~q~~nyq~fI~~Le~~I~q~~~~~~~~~~~ve~~r~~-w~ek~~~~k~~e~L~er~~~e~~~~e~~~Eqk~mDE~a 138 (148)
T COG2882 64 ---AQWQNYQQFISQLEVAIDQQQSQLSKLRKQVEQKREI-WQEKQIELKALEKLKERQKTEFLLEENRREQKIMDELA 138 (148)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Confidence 222 233445556667777777777777666654210 00122345677778888887777777776666665543
No 185
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=51.85 E-value=2.5e+02 Score=28.48 Aligned_cols=110 Identities=21% Similarity=0.226 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhh-H---HHHhhh
Q 008136 80 YEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDS-F---EAELEG 155 (576)
Q Consensus 80 ~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~-~---EaEiE~ 155 (576)
+....+++-|++-+.||+| =++|.-+++.|-..-++ ..-=|.+-||.|+.++|. + ++..|.
T Consensus 44 vLd~yL~yQKafnE~MekY-------------Le~lNlPSr~DiarvA~--lvinlE~kvD~lee~fdd~~d~l~~q~eq 108 (189)
T TIGR02132 44 VLDLNLFYQKALNDTTGNY-------------LEQVNVPTKEDIANVAS--LVINLEEKVDLIEEFFDDKFDELEAQQEQ 108 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHhCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456678999999999998 34566555544332211 222233344444444333 1 111111
Q ss_pred hhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHHh
Q 008136 156 LTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 215 (576)
Q Consensus 156 Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~ 215 (576)
- ..-..++..++. |.+.-=.|+..||++|+-..-+- +++|+-|..-|.-
T Consensus 109 ~-----~~~~~~v~~~~q---~~~~l~~K~D~~L~llE~~~~~~---~~~~~~~~~~~~~ 157 (189)
T TIGR02132 109 A-----PALKKDVTKLKQ---DIKSLDKKLDKILELLEGQQKTQ---DELKETIQKQIKT 157 (189)
T ss_pred C-----chHHhHHHHHHH---HHHHHHHHHHHHHHHHhcCccch---hHHHHHHHHHHhh
Confidence 1 000122333343 33344456778899998755444 4556666655543
No 186
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=51.10 E-value=2.5e+02 Score=27.61 Aligned_cols=10 Identities=40% Similarity=0.631 Sum_probs=3.9
Q ss_pred hhhhHHHHHH
Q 008136 7 LQGEIDRVLK 16 (576)
Q Consensus 7 LQ~EIDr~LK 16 (576)
||..+|+.|+
T Consensus 38 L~e~Ld~~L~ 47 (189)
T PF10211_consen 38 LQEWLDKMLQ 47 (189)
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 187
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=51.00 E-value=1.4e+02 Score=36.83 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=43.1
Q ss_pred HHHHHHHHhHH-hHHHHHHHhhcCCChhh-----HHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHH
Q 008136 13 RVLKKVQEGVD-VFDSIWNKVYDTDNANQ-----KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVD 86 (576)
Q Consensus 13 r~LKKV~EGVe-~Fd~iyeKl~~a~n~nQ-----KEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E 86 (576)
+.++-+.|+-. .|++.|.|+..-.+.++ -|-||..+-...+-|+.++|--|..+--. . +|++
T Consensus 383 rlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~-----e-------kl~~ 450 (1195)
T KOG4643|consen 383 RLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFEL-----E-------KLLE 450 (1195)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-------HHHH
Confidence 45555555543 68888888877666554 34455555566666666666655544322 1 4555
Q ss_pred HHHHHHHHHHHH
Q 008136 87 ARKLIEREMERF 98 (576)
Q Consensus 87 ~RKlIE~~MErF 98 (576)
.-+-...-|++.
T Consensus 451 e~~t~~~s~~rq 462 (1195)
T KOG4643|consen 451 ETSTVTRSLSRQ 462 (1195)
T ss_pred HHHHHHHhHHHH
Confidence 555555556555
No 188
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=50.53 E-value=3.1e+02 Score=28.38 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHhh
Q 008136 39 NQKEKFEADLKKEIKKLQRYRDQIKTW 65 (576)
Q Consensus 39 nQKEKlE~DLKKEIKKLQRlRDQIKtW 65 (576)
.+..-++..+.+--..+++++..++.|
T Consensus 81 ~~l~~l~~~~~~l~a~~~~l~~~~~~~ 107 (423)
T TIGR01843 81 ADAAELESQVLRLEAEVARLRAEADSQ 107 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344555555555555555555555554
No 189
>PF14282 FlxA: FlxA-like protein
Probab=50.48 E-value=27 Score=31.38 Aligned_cols=56 Identities=18% Similarity=0.343 Sum_probs=37.9
Q ss_pred HHHHHHHHHhHhhHHHHhhhhhcccC---CCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008136 136 NNLVSELESQIDSFEAELEGLTVKKG---KTRPPRLTHLETSITRHKAHIMKLELILRL 191 (576)
Q Consensus 136 ~~~IdeL~~QiE~~EaEiE~Ls~KK~---Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRl 191 (576)
...|..|++||..+..+|..|...+. +.+..++..|+..|.-...+|..|..-..-
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999988854322 122345667777777777777766544433
No 190
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=50.13 E-value=3e+02 Score=28.23 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=85.8
Q ss_pred HhHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHH---
Q 008136 23 DVFDSIWNKVYDTDNANQKEKFEADLKKEIKK-LQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERF--- 98 (576)
Q Consensus 23 e~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKK-LQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErF--- 98 (576)
..|-.+|.-+. .-+.+++.+-.+|-.+|-. |.++-.++|.|.-....+..+ ++..+.....+||+-
T Consensus 67 ~aw~~~l~e~~--~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k--------~qk~~~~~~~~lekaKk~ 136 (253)
T cd07676 67 RAFLMTLNEMN--DYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHDGRK--------AQQHIETCWKQLESSKRR 136 (253)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 45555555554 3467899999999777654 888889999998887776533 455555544444443
Q ss_pred -----HHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHH
Q 008136 99 -----KICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLET 173 (576)
Q Consensus 99 -----K~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~ 173 (576)
|+.|... ..|.|-- ....+.+.+.+| ++.+.+.-..+.|.. +..=...|+.
T Consensus 137 Y~~acke~E~A~--~~~~ka~--~d~~~sk~~~eK-------------~k~~~~~~~~~~e~a-------Kn~Y~~~l~~ 192 (253)
T cd07676 137 FERDCKEADRAQ--QYFEKMD--ADINVTKADVEK-------------ARQQAQIRHQMAEDS-------KAEYSSYLQK 192 (253)
T ss_pred HHHHHHHHHHHH--HHHHhcc--ccccCCHHHHHH-------------HHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 2233221 2222200 011122333333 222222222222211 0000123333
Q ss_pred HHHHH-HHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHHh
Q 008136 174 SITRH-KAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 215 (576)
Q Consensus 174 ~ieRh-k~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~ 215 (576)
...-. +++..-|..|+..|.. ++-..|..+++-+.-|.+-
T Consensus 193 ~N~~q~~~Y~e~mp~vfd~lQ~--lee~Ri~~l~e~l~~~~~~ 233 (253)
T cd07676 193 FNKEQHEHYYTHIPNIFQKIQE--MEERRIGRVGESMKTYAEV 233 (253)
T ss_pred HHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 33322 5777788888888876 7778888888888888754
No 191
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=49.99 E-value=90 Score=35.71 Aligned_cols=55 Identities=11% Similarity=0.378 Sum_probs=37.6
Q ss_pred HHHHHHH------HHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008136 41 KEKFEAD------LKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERF 98 (576)
Q Consensus 41 KEKlE~D------LKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErF 98 (576)
|++|+.+ .+.|.++|...=++...|+..++-.++. .|.++|.+.+++++.-+.|+
T Consensus 552 r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~---~~~~kl~eL~~~~~pi~~r~ 612 (653)
T PTZ00009 552 KNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKE---EFEHKQKEVESVCNPIMTKM 612 (653)
T ss_pred HHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHH---HHHHHHHHHHHHHHHHHHHH
Confidence 6666543 3455566777777888899866544443 67888888888888766554
No 192
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=49.29 E-value=5.7e+02 Score=31.97 Aligned_cols=53 Identities=28% Similarity=0.297 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 008136 82 QALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELE 143 (576)
Q Consensus 82 ~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~ 143 (576)
+.+.+++.-.+..|+..|+++++-|-=.=-++-| |.++.|++.=++.+-.+|+
T Consensus 248 ~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeL---------e~~~~et~~~~s~~~~~~~ 300 (1072)
T KOG0979|consen 248 REYNAYKQAKDRAKKELRKLEKEIKPIEDKKEEL---------ESEKKETRSKISQKQRELN 300 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhH---------HhHHHhHHHHHHHHHHHHH
Confidence 4677788888888899999988876433333333 3344555544444444443
No 193
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=49.04 E-value=3.5 Score=46.60 Aligned_cols=81 Identities=19% Similarity=0.399 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHH-HHHHHhhhCCC-CC--hhhhhhh
Q 008136 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKL-ELILRLLDNDE-LS--PEQVNDV 205 (576)
Q Consensus 130 E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kL-E~lLRlLdNd~-Ld--pe~V~dI 205 (576)
+.-.=|++.|+..+.|.|+++.|.+.+ ..|++.|+.+++.+..-|--- ..||=+|+|+. || ...|+.|
T Consensus 375 ~it~kvN~iiek~n~~fe~i~~ef~~v--------e~Ri~~l~~~v~d~~~d~wsynaELlVlleN~~tld~~Ds~~~~L 446 (550)
T PF00509_consen 375 QITKKVNSIIEKMNKQFEQIDKEFNEV--------EKRIDNLEKKVDDKIADVWSYNAELLVLLENQRTLDLHDSNVNNL 446 (550)
T ss_dssp HHHHHHHHHHHTTTCEEEECSCSSSTT--------GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHH--------HHHHHHHHHhhhccchhhhcccHHHHHHhccccchhhhHHHHHHH
Confidence 334444444554455555554444444 356778887777766554322 34556788876 55 7788899
Q ss_pred hHHHHHHHHhCCC
Q 008136 206 KDLLEDYVERNQD 218 (576)
Q Consensus 206 KEdIeyYVE~nqd 218 (576)
-|-|..-+..|..
T Consensus 447 ~ekvk~qL~~na~ 459 (550)
T PF00509_consen 447 YEKVKRQLRENAE 459 (550)
T ss_dssp HHHHHHHHGTGEE
T ss_pred HHHHHHHHhccch
Confidence 9999999988765
No 194
>PRK10780 periplasmic chaperone; Provisional
Probab=48.78 E-value=2.3e+02 Score=26.88 Aligned_cols=90 Identities=9% Similarity=0.182 Sum_probs=46.4
Q ss_pred chhhhHHHHHHH----HHHhHHhHHHHHHHhhcC---CChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhh
Q 008136 6 KLQGEIDRVLKK----VQEGVDVFDSIWNKVYDT---DNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSA 78 (576)
Q Consensus 6 KLQ~EIDr~LKK----V~EGVe~Fd~iyeKl~~a---~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a 78 (576)
+.+.++++-++. +..=...|+..++++... -+..+|++.|.+|...-+.+|+...+... |+.-
T Consensus 43 ~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~~~qq-----~~~~----- 112 (165)
T PRK10780 43 GVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQAFEQ-----DRRR----- 112 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-----
Confidence 344444444444 444444777777777543 24566777777776555555554443321 1111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008136 79 SYEQALVDARKLIEREMERFKICEKETKTKAFS 111 (576)
Q Consensus 79 ~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafS 111 (576)
...+.++-|-.++. ++|++-.|.+.|+
T Consensus 113 ----~~~e~~~~i~~ki~--~ai~~vak~~gy~ 139 (165)
T PRK10780 113 ----RSNEERNKILTRIQ--TAVKSVANKQGYD 139 (165)
T ss_pred ----HHHHHHHHHHHHHH--HHHHHHHHHcCCe
Confidence 22233333434333 4567777777775
No 195
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=48.59 E-value=83 Score=27.87 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=21.7
Q ss_pred HHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008136 55 LQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFK 99 (576)
Q Consensus 55 LQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK 99 (576)
|..-|+.|..|....+-+.+ .|......|+..+.+|.
T Consensus 16 l~~kr~e~~~~~~~~~~~e~--------~L~~~e~~l~~~~~~f~ 52 (126)
T PF13863_consen 16 LDTKREEIERREEQLKQREE--------ELEKKEQELEEDVIKFD 52 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 34445555555554443322 47777777777777773
No 196
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=48.30 E-value=1.4e+02 Score=37.58 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 133 DWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 133 ~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
.-+..++.+|+.+|..++...+.+
T Consensus 619 ~~~~e~~~~l~~~i~sL~~~~~~~ 642 (1317)
T KOG0612|consen 619 TEISEIIAELKEEISSLEETLKAG 642 (1317)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhh
Confidence 345556666666666666665554
No 197
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=48.23 E-value=2.6e+02 Score=26.90 Aligned_cols=22 Identities=9% Similarity=0.314 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhHHhHHHHHHHh
Q 008136 11 IDRVLKKVQEGVDVFDSIWNKV 32 (576)
Q Consensus 11 IDr~LKKV~EGVe~Fd~iyeKl 32 (576)
+-++|.++.+.++..-.+++..
T Consensus 80 l~~~l~~l~~~~~~~~~~~~~~ 101 (236)
T PF09325_consen 80 LSEALSQLAEAFEKISELLEEQ 101 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666554
No 198
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=48.22 E-value=4.6e+02 Score=32.81 Aligned_cols=85 Identities=24% Similarity=0.262 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcc------cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-
Q 008136 126 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVK------KGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS- 198 (576)
Q Consensus 126 keK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~K------K~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ld- 198 (576)
+++.|-..=|...|++..-+++.|.+++-.+..+ ++|.--..-..|+..|+..+.-+.+=|..||..-+..+-
T Consensus 428 ~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~n 507 (1200)
T KOG0964|consen 428 KEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVAN 507 (1200)
T ss_pred HHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 4556666677888888888888888777655221 111100112256677777777777777777777765543
Q ss_pred -hhhhhhhhHHHH
Q 008136 199 -PEQVNDVKDLLE 210 (576)
Q Consensus 199 -pe~V~dIKEdIe 210 (576)
-+-|..|.+.+.
T Consensus 508 Gi~~v~~I~e~~k 520 (1200)
T KOG0964|consen 508 GIDSVRKIKEELK 520 (1200)
T ss_pred hhHHHHHHHHHhc
Confidence 345566666555
No 199
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=48.14 E-value=1.4e+02 Score=28.93 Aligned_cols=111 Identities=25% Similarity=0.343 Sum_probs=67.0
Q ss_pred HHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHhHHHHHhhhccc--chhhhhhhhhHHHHHHHHHHHHH
Q 008136 16 KKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKK-LQRYRDQIKTWIQSS--EIKDKKVSASYEQALVDARKLIE 92 (576)
Q Consensus 16 KKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKK-LQRlRDQIKtWlasn--eIKDK~~~a~~~~~L~E~RKlIE 92 (576)
+++.|....|..-++++....+ + .++.+=||. ..-+.++|+.|+++- +|||+. ......|.+.|..|+
T Consensus 3 ~~~~e~~~~~~~~~~~~~~~~~--~-----~Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n--~~~~e~l~~~~~kl~ 73 (155)
T PF07464_consen 3 QHAQEFQKEFQEQVNKLLGSQN--Q-----QEVVKAIKEQSDSVAQQLQNVSSSLQEEIKDAN--PEAEEALKQLKTKLE 73 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTSS----S-----S-SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-S--STHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCc--H-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC--hhHHHHHHHHHHHHH
Confidence 6788999999999999987632 2 233344443 346677777777764 677755 344556777777777
Q ss_pred HHHHHHHHHHhhhccccccccccCCCCCCChhHHH-HHHHHHHHHHHHHHHHHhHhhHHHHhhh
Q 008136 93 REMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA-KSETRDWLNNLVSELESQIDSFEAELEG 155 (576)
Q Consensus 93 ~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~Eke-K~E~~~WL~~~IdeL~~QiE~~EaEiE~ 155 (576)
+.-+.++ +..|+-.+ -.+..+=|...|..|-.+++.+-.+|..
T Consensus 74 et~~~L~--------------------k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~ 117 (155)
T PF07464_consen 74 ETAEKLR--------------------KANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSE 117 (155)
T ss_dssp HHHHGGG--------------------G-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHH--------------------hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665542 11454332 2355666667777777776666666543
No 200
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=48.03 E-value=1.8e+02 Score=24.91 Aligned_cols=40 Identities=30% Similarity=0.392 Sum_probs=29.5
Q ss_pred hHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008136 58 YRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKET 105 (576)
Q Consensus 58 lRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~ 105 (576)
+|.|+..|.+-.+ .+..+..-+|..||.=+.|+|.+|.++
T Consensus 26 Lr~q~~~~~~ER~--------~L~ekne~Ar~rvEamI~RLk~leq~~ 65 (65)
T TIGR02449 26 LRAQEKTWREERA--------QLLEKNEQARQKVEAMITRLKALEQHT 65 (65)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 5667777765432 233467789999999999999999753
No 201
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=47.89 E-value=60 Score=39.78 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=31.8
Q ss_pred CcCCCCCCccccc--CCCCCC-CCCCCccccccccCCCCCCCCCCCCCCCCccccCCCCCCC
Q 008136 369 PVNLTSSTKEEDV--GNFPGR-RSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLG 427 (576)
Q Consensus 369 ~~~~~~~~k~~~~--~~fp~r-r~sp~l~d~rg~~r~~~~~q~~~s~p~~~~~~v~sng~~~ 427 (576)
|+.-+.+.|..+. .++|+| |+||..++.-||-|..----|..+.|...|-|.|.|+...
T Consensus 952 ~~~~p~~~~~s~l~~~~~p~rer~s~~f~~k~~l~~~~s~l~a~~~g~s~~gq~~~~~p~~~ 1013 (1516)
T KOG1832|consen 952 PISFPRKRKLSELRDSSVPGRERRSSTFADKSGLQTPASALDANQSGSSRLGQMTPANPERL 1013 (1516)
T ss_pred CCCCCcccCCccccCcccccccccCCCCcccccccChhhhcCCCCCCccccccCCCcCCCCC
Confidence 4455555666554 456776 7788887665544422222233344444566666655444
No 202
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=47.88 E-value=1.7e+02 Score=29.99 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHH
Q 008136 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDAR 88 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~R 88 (576)
.+|-+..|||.-=.-.||..-.|+..+.+.....++|.+|+.---|+.+..+--+.-+.+ |++.. ...|.+.+
T Consensus 133 k~i~k~RKkLe~rRLd~D~~k~r~~kAk~~~~~~~~e~elr~Ae~kF~~~~E~a~~~M~~--i~~~~-----~~~~~~L~ 205 (229)
T cd07594 133 KTISKERKLLENKRLDLDACKTRVKKAKSAEAIEQAEQDLRVAQSEFDRQAEITKLLLEG--ISSTH-----ANHLRCLR 205 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhcC-----chHHHHHH
Confidence 377888999999999999999999888776666788888888878888877766655543 33321 23788899
Q ss_pred HHHHHHHHHHHHHHhhh
Q 008136 89 KLIEREMERFKICEKET 105 (576)
Q Consensus 89 KlIE~~MErFK~vEKE~ 105 (576)
.+|+.+++=|+.|=..+
T Consensus 206 ~lv~AQl~Yh~q~~e~L 222 (229)
T cd07594 206 DFVEAQMTYYAQCYQYM 222 (229)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998885443
No 203
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=47.51 E-value=4.6e+02 Score=29.54 Aligned_cols=47 Identities=13% Similarity=0.273 Sum_probs=21.0
Q ss_pred HHHhHHhHHHHHHHhhcCCChh-hHHHHHHHHHHHHHHHHHhHHHHHh
Q 008136 18 VQEGVDVFDSIWNKVYDTDNAN-QKEKFEADLKKEIKKLQRYRDQIKT 64 (576)
Q Consensus 18 V~EGVe~Fd~iyeKl~~a~n~n-QKEKlE~DLKKEIKKLQRlRDQIKt 64 (576)
+.+-...|...|.++......= +..+-+.++.+++..|+..-+.|+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 156 ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE 203 (563)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666665443211 1112233444444444444444443
No 204
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=47.21 E-value=76 Score=30.40 Aligned_cols=54 Identities=22% Similarity=0.460 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHH---HHHHHHHH-------hHHHHHhhhccc
Q 008136 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLK---KEIKKLQR-------YRDQIKTWIQSS 69 (576)
Q Consensus 11 IDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLK---KEIKKLQR-------lRDQIKtWlasn 69 (576)
|++++.-....|+..-.-|+++ ..+++.|+.+|+ ++|+.|+. |+.+|..|...+
T Consensus 4 i~~Im~~~gk~i~~~K~~~~~~-----~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 4 IDKIMAENGKDIEAPKAKVDKV-----KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHccCcHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4555544444554444444444 235666666665 34444443 444555555444
No 205
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=46.98 E-value=1.7e+02 Score=29.63 Aligned_cols=88 Identities=15% Similarity=0.265 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHH
Q 008136 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDAR 88 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~R 88 (576)
.||-+..|||.-=.-.||..-.|+..+... ...+|.+|+.-=-|.-+..|....-+. .|++.. ...+....
T Consensus 114 k~i~k~RKkLe~rRLdyD~~ksk~~kak~~--~~~~eeElr~Ae~kfees~E~a~~~M~--~i~~~e-----~e~~~~L~ 184 (215)
T cd07593 114 KEYHSARKKLESRRLAYDAALTKSQKAKKE--DSRLEEELRRAKAKYEESSEDVEARMV--AIKESE-----ADQYRDLT 184 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc--chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcC-----hHHHHHHH
Confidence 478888999999999999999999888544 356888888888888888888887776 355442 23788889
Q ss_pred HHHHHHHHHHHHHHhhh
Q 008136 89 KLIEREMERFKICEKET 105 (576)
Q Consensus 89 KlIE~~MErFK~vEKE~ 105 (576)
.+|+.+|+-|+.|=..+
T Consensus 185 ~lv~AQl~Yh~q~~e~L 201 (215)
T cd07593 185 DLLDAELDYHQQSLDVL 201 (215)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998875443
No 206
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=46.74 E-value=5.2e+02 Score=29.94 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 008136 172 ETSITRHKAHIMKLELILRLLDNDELS 198 (576)
Q Consensus 172 e~~ieRhk~HI~kLE~lLRlLdNd~Ld 198 (576)
++..+-|.--..++....+.+.+++.+
T Consensus 442 ~el~~l~~~~~~n~~~a~~~l~~~D~~ 468 (533)
T COG1283 442 EELDALFALTLENLRLAISVLVTGDLE 468 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 334444445555555555555555544
No 207
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.61 E-value=1.6e+02 Score=30.38 Aligned_cols=89 Identities=12% Similarity=0.205 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHH
Q 008136 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDAR 88 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~R 88 (576)
.+|-+.-|||..-.-.||..-.++..+.++..++.+..+++.-=.|+--.++--..-+. .|.|. ...+...+
T Consensus 147 k~i~k~RKkle~~RLd~D~~K~~~~ka~~~~k~~~~~~e~E~aEdef~~a~E~a~~~M~--~il~~------~e~i~~L~ 218 (242)
T cd07600 147 QKAHKARKKVEDKRLQLDTARAELKSAEPAEKQEAARVEVETAEDEFVSATEEAVELMK--EVLDN------PEPLQLLK 218 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhHHHHHHHHH--HHHhh------hHHHHHHH
Confidence 37788888999999999999888888776654444444444333333333332222221 12211 13788888
Q ss_pred HHHHHHHHHHHHHHhhh
Q 008136 89 KLIEREMERFKICEKET 105 (576)
Q Consensus 89 KlIE~~MErFK~vEKE~ 105 (576)
.+|+.+|+-||.|=+.+
T Consensus 219 ~fv~AQl~Yh~~~~e~L 235 (242)
T cd07600 219 ELVKAQLAYHKTAAELL 235 (242)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998886544
No 208
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=46.44 E-value=1.9e+02 Score=27.55 Aligned_cols=64 Identities=27% Similarity=0.524 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHH----HhHHHHHhhhcc-cchhh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008136 41 KEKFEADLKKEIKKLQ----RYRDQIKTWIQS-SEIKD--KKVSASYEQALVDARKLIEREMERFKICEKE 104 (576)
Q Consensus 41 KEKlE~DLKKEIKKLQ----RlRDQIKtWlas-neIKD--K~~~a~~~~~L~E~RKlIE~~MErFK~vEKE 104 (576)
-+.||.+||+.|+++. .+.+.|..++.. +||=. +-....+...+.+.|+.+++..|+...++..
T Consensus 97 e~~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lekL~~fd~~ 167 (204)
T PF04740_consen 97 EDFLESELKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEKLRAFDQQ 167 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667776666554 566777777776 55511 1111245566778888888887777665543
No 209
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=46.23 E-value=84 Score=25.85 Aligned_cols=59 Identities=29% Similarity=0.452 Sum_probs=42.9
Q ss_pred chhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhccc
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasn 69 (576)
.|+.+||+=. +|.+|.+..=.+| .+.+...+...+..|..--.||.-||++|..+....
T Consensus 5 ~L~~~i~~E~-ki~~Gae~m~~~~----~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~ 63 (70)
T PF02185_consen 5 ELQKKIDKEL-KIKEGAENMLQAY----STDKKKVLSEAESQLRESNQKIELLREQLEKLQQRS 63 (70)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHH----CCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHH----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3556666543 6888988888777 333333588889999999999999999998876654
No 210
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=46.02 E-value=72 Score=28.23 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhhhCCCCChhhhhhhhHH
Q 008136 170 HLETSITRHKAHIMK-LELILRLLDNDELSPEQVNDVKDL 208 (576)
Q Consensus 170 eLe~~ieRhk~HI~k-LE~lLRlLdNd~Ldpe~V~dIKEd 208 (576)
-++..+++..-.+.+ ++.|-|+|+++.|.|+.+++++-.
T Consensus 47 vm~Ki~~kg~~yv~~E~~RL~~iL~~~~ls~~K~del~~R 86 (93)
T cd00238 47 VMEKILEKGEDYVEKELARLERLLEKKGLAPEKADELTRR 86 (93)
T ss_pred HHHHHHHcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 344455455555555 888899999999999999997643
No 211
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=45.97 E-value=1.7e+02 Score=24.11 Aligned_cols=59 Identities=22% Similarity=0.466 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHHhhcCCChh--hHHHHHHHHHHHHHHH-HHhHHHHHhhhcc
Q 008136 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNAN--QKEKFEADLKKEIKKL-QRYRDQIKTWIQS 68 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~n--QKEKlE~DLKKEIKKL-QRlRDQIKtWlas 68 (576)
.||...+.+|.+-|+.+...+.++....... -+++++ .|-.||++| +.++..||.--..
T Consensus 10 ~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~-~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 10 QEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELD-ELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999888743 233332 344445444 4566666654444
No 212
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=45.61 E-value=2.3e+02 Score=29.87 Aligned_cols=111 Identities=15% Similarity=0.240 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCC
Q 008136 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKT 121 (576)
Q Consensus 42 EKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~ 121 (576)
++|..||..-+.+|..+-++|+.-.. ..+..+|..+..+|+.+- |. .+
T Consensus 153 ~~L~~dl~~rl~~i~~~v~~i~~~~p--------------~~~~~~~~rL~~rl~el~--------------~~----~i 200 (291)
T TIGR00255 153 ENLKSDIVQRLDLIEREVKKVRSAMP--------------DILQWQRERLKARIEDLA--------------QE----FL 200 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhch--------------HHHHHHHHHHHHHHHHHh--------------cC----CC
Confidence 57888888888888888888765433 378888888888887661 11 13
Q ss_pred ChhHHHHHHHHHH-----HHHHHHHHHHhHhhHHHHhhhhhcccCCC-------------------CC----chhHHHHH
Q 008136 122 DPKEKAKSETRDW-----LNNLVSELESQIDSFEAELEGLTVKKGKT-------------------RP----PRLTHLET 173 (576)
Q Consensus 122 DP~EkeK~E~~~W-----L~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk-------------------~~----~rl~eLe~ 173 (576)
|+. .--.|+.=| +++=|+-|+..+++|..-++.-. --||+ .. .-.-+++.
T Consensus 201 d~~-Rl~qEval~adK~DI~EEl~RL~sHl~~f~~~L~~~~-~vGrkLDFL~QEmnRE~NTigSKs~d~~is~~vVe~K~ 278 (291)
T TIGR00255 201 DLN-RLEQEAALLAQRIDIAEEIDRLDSHVKEFYNILKKGE-AVGRKLDFMMQELNRESNTLASKAIDADITNLAVEMKV 278 (291)
T ss_pred CHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcCC-CcCcchhHHHHHHhHHHHHHHHccCcHHHHHHHHHHHH
Confidence 553 212223222 34557778888888888776532 11222 11 12456677
Q ss_pred HHHHHHHHHHHHH
Q 008136 174 SITRHKAHIMKLE 186 (576)
Q Consensus 174 ~ieRhk~HI~kLE 186 (576)
.||+-|.+|.++|
T Consensus 279 eiEkiREQVQNIE 291 (291)
T TIGR00255 279 LIEKIKEQIQNIE 291 (291)
T ss_pred HHHHHHHHHhcCC
Confidence 7777777777765
No 213
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.30 E-value=2.1e+02 Score=28.24 Aligned_cols=44 Identities=23% Similarity=0.386 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHH
Q 008136 135 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHI 182 (576)
Q Consensus 135 L~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI 182 (576)
+-.-+++|..+++.++.|++.+ ++..+.+++++...+...+..+
T Consensus 108 ~l~~l~~l~~~~~~l~~el~~~----~~~Dp~~i~~~~~~~~~~~~~a 151 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELEKY----SENDPEKIEKLKEEIKIAKEAA 151 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHH
Confidence 4566788889999999998754 3345566666666555444433
No 214
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=45.27 E-value=2.9e+02 Score=26.59 Aligned_cols=52 Identities=23% Similarity=0.443 Sum_probs=31.5
Q ss_pred CchhHHHHHHHHHHHHHHHH----HHHHHHhhhCC--CCChhhhhhhhHHHHHHHHhC
Q 008136 165 PPRLTHLETSITRHKAHIMK----LELILRLLDND--ELSPEQVNDVKDLLEDYVERN 216 (576)
Q Consensus 165 ~~rl~eLe~~ieRhk~HI~k----LE~lLRlLdNd--~Ldpe~V~dIKEdIeyYVE~n 216 (576)
.+|++.++.-+....-++.. +|.|-..+..+ ..+-+.+.++|..|..|++..
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~ 219 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQ 219 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554433 34444433332 256788889999999999764
No 215
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=45.24 E-value=84 Score=32.64 Aligned_cols=64 Identities=19% Similarity=0.232 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 008136 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 196 (576)
Q Consensus 130 E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~ 196 (576)
...+-+-..+++++.++|.+|.++.....+ ..-.++.+++..+-+.+-++.-+-.+++.|....
T Consensus 147 ~i~d~~~~~le~i~~~~~~ie~~l~~~~~~---~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~ 210 (322)
T COG0598 147 AIVDNYFPVLEQIEDELEAIEDQLLASTTN---EELERLGELRRSLVYLRRALAPLRDVLLRLARRP 210 (322)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcCccH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 445556667777777777777776443211 2335788899988888888888666666555554
No 216
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=44.99 E-value=2.7e+02 Score=30.10 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=37.7
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHhhhCCCCC----hhhhhhhhHHHHHHHHhCCC
Q 008136 168 LTHLETSITR-HKAHIMKLELILRLLDNDELS----PEQVNDVKDLLEDYVERNQD 218 (576)
Q Consensus 168 l~eLe~~ieR-hk~HI~kLE~lLRlLdNd~Ld----pe~V~dIKEdIeyYVE~nqd 218 (576)
..+|+..+++ +.|||.+|-..|..|..+... .+++..=|=|++.-+|..|+
T Consensus 122 K~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE 177 (310)
T PF09755_consen 122 KVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQE 177 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4477888877 779999998888888765533 45666667788888888665
No 217
>PF07072 DUF1342: Protein of unknown function (DUF1342); InterPro: IPR009777 This family consists of several hypothetical bacterial proteins of around 250 residues in length. Members of this family are often known as YacF after the Escherichia coli protein P36680 from SWISSPROT. The function of this family is unknown.; PDB: 2OEZ_A.
Probab=44.79 E-value=38 Score=34.13 Aligned_cols=45 Identities=27% Similarity=0.556 Sum_probs=30.7
Q ss_pred HHHHHH-HHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008136 46 ADLKKE-IKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERF 98 (576)
Q Consensus 46 ~DLKKE-IKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErF 98 (576)
+|||-| ||.|.|++-.++.|....+|-.. +|.+....|+.....-
T Consensus 39 ~DlK~eLlKELeRq~~~L~~~~~~p~vd~~--------~l~~~l~~l~~~~~~L 84 (211)
T PF07072_consen 39 ADLKSELLKELERQRQKLNQWRDNPGVDQE--------ALDALLQELDQALQAL 84 (211)
T ss_dssp S-HHHHHHHHHHHHHHHHHCTTT-TTS-HH--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHH--------HHHHHHHHHHHHHHHH
Confidence 367776 58899999999999999998744 3555555666555444
No 218
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=44.73 E-value=1.7e+02 Score=30.44 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=29.0
Q ss_pred cccchhhhHHHHHHHHHHhHHhHHHHHHHhhcC
Q 008136 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDT 35 (576)
Q Consensus 3 a~RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a 35 (576)
..||||++++.+++.|.-.-..|+..|...+.+
T Consensus 114 ~~~klqk~l~~~~~~leksKk~Y~~acke~E~A 146 (252)
T cd07675 114 EGRKAQQYLDMCWKQMDNSKKKFERECREAEKA 146 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999888877765
No 219
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=44.54 E-value=41 Score=26.61 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhhCCCCChhhhhh-hhHHHHHHHHh
Q 008136 180 AHIMKLELILRLLDNDELSPEQVND-VKDLLEDYVER 215 (576)
Q Consensus 180 ~HI~kLE~lLRlLdNd~Ldpe~V~d-IKEdIeyYVE~ 215 (576)
..+.+||.|++.|+|+.++-|+.-. .++-++.|-.+
T Consensus 3 e~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c 39 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKC 39 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999766554 56666665544
No 220
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=44.08 E-value=1.6e+02 Score=24.24 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008136 127 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 190 (576)
Q Consensus 127 eK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLR 190 (576)
+|..+..=+...|++++.-|+++|.|+-.+.. .....+...+..|+-.+.+|+.=|+
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~-------s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPP-------SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66777888899999999999999999877622 2345777788888888887765543
No 221
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=44.06 E-value=2.3e+02 Score=29.12 Aligned_cols=71 Identities=27% Similarity=0.448 Sum_probs=41.9
Q ss_pred HHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHH
Q 008136 54 KLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRD 133 (576)
Q Consensus 54 KLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~ 133 (576)
|++.....|..|-.--+ .+...-.+..++|..+|+||.. || .+-=|.-+..
T Consensus 160 K~~~a~~Ev~e~e~k~~--------~a~~~fe~is~~ik~El~rFe~-er--------------------~~Dfk~~v~~ 210 (234)
T cd07665 160 KLQQAKDEIAEWESRVT--------QYERDFERISATVRKEVIRFEK-EK--------------------SKDFKNHIIK 210 (234)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH-HH--------------------HHHHHHHHHH
Confidence 55555555555544322 2333566677888899999911 00 0111334667
Q ss_pred HHHHHHHHHHHhHhhHHHHh
Q 008136 134 WLNNLVSELESQIDSFEAEL 153 (576)
Q Consensus 134 WL~~~IdeL~~QiE~~EaEi 153 (576)
||..+|+.=+.-||.+|.=+
T Consensus 211 fles~ie~qke~ie~We~fl 230 (234)
T cd07665 211 YLETLLHSQQQLVKYWEAFL 230 (234)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 88888877777777777543
No 222
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=43.86 E-value=4.6e+02 Score=28.48 Aligned_cols=135 Identities=21% Similarity=0.281 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-----ccccccCCCC-CC
Q 008136 48 LKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKA-----FSKEGLGQQP-KT 121 (576)
Q Consensus 48 LKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKa-----fSKEGL~~~~-K~ 121 (576)
|-+|+-+-|.-|||.|. ++|+=++||..+++..+.-- |.+-++.... +.
T Consensus 14 L~~eLe~cq~ErDqyKl-------------------------MAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~ 68 (319)
T PF09789_consen 14 LSQELEKCQSERDQYKL-------------------------MAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENK 68 (319)
T ss_pred HHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchh
Confidence 66788888888888763 56666677777777554333 2222232110 00
Q ss_pred Ch--hHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCC-----------CCCchhHHHHHHHHHHHHHHHHHHHH
Q 008136 122 DP--KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGK-----------TRPPRLTHLETSITRHKAHIMKLELI 188 (576)
Q Consensus 122 DP--~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~K-----------k~~~rl~eLe~~ieRhk~HI~kLE~l 188 (576)
.. .-.+-.|-..=|..-|++|+..+..+.-|+.-|..+-.+ .....-+.+-..+++.+..+..||.=
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d 148 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERD 148 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 001112223334445555555555555555444221111 01234556667778888888888887
Q ss_pred HHhhhCCCCChhhhhhhhHHHHHHH
Q 008136 189 LRLLDNDELSPEQVNDVKDLLEDYV 213 (576)
Q Consensus 189 LRlLdNd~Ldpe~V~dIKEdIeyYV 213 (576)
++.+- |+..++.-+-++|=
T Consensus 149 ~qs~l------DEkeEl~~ERD~yk 167 (319)
T PF09789_consen 149 LQSLL------DEKEELVTERDAYK 167 (319)
T ss_pred HHHHH------HHHHHHHHHHHHHH
Confidence 77764 34445544445553
No 223
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=43.84 E-value=1.8e+02 Score=29.55 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=16.8
Q ss_pred chhhhHHHHHHHHHHhHHhHHHHHHHhhc
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYD 34 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~ 34 (576)
|+|+-+...+++|..--..|+.....+..
T Consensus 123 kaqk~~~~~~~~l~kaKk~Y~~~cke~e~ 151 (258)
T cd07655 123 KAQKPWAKLLKKVEKAKKAYHAACKAEKS 151 (258)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666655543
No 224
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=43.81 E-value=1.6e+02 Score=23.08 Aligned_cols=72 Identities=21% Similarity=0.268 Sum_probs=46.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhc-ccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008136 120 KTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV-KKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD 193 (576)
Q Consensus 120 K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~-KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLd 193 (576)
+.||.+- ..+..-|....++|+.+++.++..++.|.. =+|.....=.+....+.....-.+..|+.+...|.
T Consensus 3 ~vd~~~l--~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~ 75 (86)
T PF06013_consen 3 KVDPEQL--RAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALEELSQALR 75 (86)
T ss_dssp TSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566444 446778889999999999999999999942 24555443344445555555555555555554443
No 225
>smart00126 IL6 Interleukin-6 homologues. Family includes granulocyte colony-stimulating factor (G-CSF) and myelomonocytic growth factor (MGF). IL-6 is also known as B-cell stimulatory factor 2.
Probab=43.80 E-value=51 Score=32.09 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=34.4
Q ss_pred HHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHH-HHhHHHHHhhh
Q 008136 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKTWI 66 (576)
Q Consensus 12 Dr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKL-QRlRDQIKtWl 66 (576)
+.||.||..|+-.|..+++-+++--. +-++..+. |-.-+|-| |-+|+++|.|-
T Consensus 53 e~CL~ri~~GL~~yq~~L~~l~~~f~-~~~~~v~~-l~~~~~~L~~~l~~k~k~~~ 106 (154)
T smart00126 53 EICLVKITAGLLEYQVYLEYLQNEFP-ENKENVDT-LQLDTKTLIQIIQQEMKDLG 106 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCc-cccccHHH-HHHHHHHHHHHHHHHhhCcC
Confidence 68999999999999999987654333 22444333 33333333 45667777774
No 226
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=43.71 E-value=3.6e+02 Score=27.23 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=17.4
Q ss_pred HHHHhHHhHHHHHHHhhcCCC--hhhHHHHHHHHHHHH
Q 008136 17 KVQEGVDVFDSIWNKVYDTDN--ANQKEKFEADLKKEI 52 (576)
Q Consensus 17 KV~EGVe~Fd~iyeKl~~a~n--~nQKEKlE~DLKKEI 52 (576)
.+..+.-.|...|+.|..... +++.+.+-..|..||
T Consensus 52 ~~~~~~Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev 89 (239)
T cd07658 52 ASKSVSGTLSSAWTCVAEEMESEADIHRNLGSALTEEA 89 (239)
T ss_pred hhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444467777776654332 334444444444433
No 227
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=43.12 E-value=6.4e+02 Score=29.97 Aligned_cols=24 Identities=21% Similarity=0.551 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 132 RDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 132 ~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
++|.++ ++.++.+++.+.+-++.+
T Consensus 635 r~~~~E-L~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 635 REFKKE-LERMKDQLQDLKASIEQL 658 (717)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 455444 446666666665555555
No 228
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=42.78 E-value=3.4e+02 Score=26.75 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=10.0
Q ss_pred chhhhHHHHHHHHHHhHH
Q 008136 6 KLQGEIDRVLKKVQEGVD 23 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe 23 (576)
.++.+.+.+-.+|.+-++
T Consensus 31 ~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 31 QLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555566665555
No 229
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=42.56 E-value=3.8e+02 Score=28.91 Aligned_cols=97 Identities=15% Similarity=0.281 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhcccchh-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCC
Q 008136 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIK-DKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQP 119 (576)
Q Consensus 41 KEKlE~DLKKEIKKLQRlRDQIKtWlasneIK-DK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~ 119 (576)
=+||-++|+.-=+||.-..+-|-.|-=.+|-| +|. .+--+|-|+++-=|--+ .-|+--|.
T Consensus 179 F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~-------LMAKCR~L~qENeElG~---------q~s~Gria--- 239 (330)
T KOG2991|consen 179 FLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKM-------LMAKCRTLQQENEELGH---------QASEGRIA--- 239 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHH-------HHHHHHHHHHHHHHHHh---------hhhcccHH---
Confidence 35677777777789999999999999999999 777 66778999887544331 11111110
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 120 KTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 120 K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
++.-+-.-...-.+=|+..-++|..-++.+..++|..
T Consensus 240 ~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgm 276 (330)
T KOG2991|consen 240 ELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGM 276 (330)
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcc
Confidence 0000000001122335666677777777777777765
No 230
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=42.21 E-value=6.5e+02 Score=29.76 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHH-----------HHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008136 125 EKAKSETRDWLNNLV-----------SELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD 193 (576)
Q Consensus 125 EkeK~E~~~WL~~~I-----------deL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLd 193 (576)
-.-..|+..|+.... ..|+.-+|+|...++++..+-.+...+ -.+-..++|.+-|+.++|.||.+|.
T Consensus 187 ~al~~e~~~~~~~~~~~~~~~~~~d~~~l~vll~qCr~~v~~v~~~~~~~G~S--v~l~~~L~Rl~Q~L~Ri~~Ll~~l~ 264 (643)
T PF10136_consen 187 VALQREVEAFLEAYRQQDEDPDSEDLKHLRVLLDQCREQVDRVRKHLEKYGVS--VSLVFLLERLRQQLDRIELLLDLLV 264 (643)
T ss_pred HHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHhccccCee--HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345667777777654 345667888888888884332233222 2677899999999999999999999
No 231
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=42.08 E-value=2.3e+02 Score=29.04 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=29.3
Q ss_pred ccchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCC
Q 008136 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN 37 (576)
Q Consensus 4 ~RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n 37 (576)
.+|+|+++++.++.|.-.-..|+..+...+.+..
T Consensus 116 ~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~ 149 (253)
T cd07676 116 GRKAQQHIETCWKQLESSKRRFERDCKEADRAQQ 149 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999998888876644
No 232
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=42.03 E-value=7e+02 Score=30.11 Aligned_cols=67 Identities=22% Similarity=0.352 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhc----cc---------CCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KK---------GKTRPPRLTHLETSITRHKAHIMKLELILRL 191 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~----KK---------~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRl 191 (576)
++++.+-.+=+...+..|+..++.++.++..... -| .=++-.+|..|+-.++..+.-+.+|+.=|.-
T Consensus 460 e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k 539 (775)
T PF10174_consen 460 EKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK 539 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5555555566677777777777777777644320 00 1122355777777787777777777655543
No 233
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=41.97 E-value=2.9e+02 Score=25.59 Aligned_cols=83 Identities=18% Similarity=0.349 Sum_probs=42.6
Q ss_pred cchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHH---hhhcccchhhhhhhhhHH
Q 008136 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIK---TWIQSSEIKDKKVSASYE 81 (576)
Q Consensus 5 RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIK---tWlasneIKDK~~~a~~~ 81 (576)
|+|..|+++.-..+.---+..+..-.++.. ..+.--.++..++.+..+|...+|.+. +|+..- .
T Consensus 62 ~~l~~d~~~l~~~~~rL~~~~~~~ere~~~--~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~-----------~ 128 (151)
T PF11559_consen 62 RRLRSDIERLQNDVERLKEQLEELERELAS--AEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQR-----------K 128 (151)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Confidence 455566666555554444444443333331 122223455666666666667777654 333321 1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008136 82 QALVDARKLIEREMERFKI 100 (576)
Q Consensus 82 ~~L~E~RKlIE~~MErFK~ 100 (576)
....--.|..|.+|++.|.
T Consensus 129 tq~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 129 TQYEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2334445566777777763
No 234
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=41.63 E-value=2.6e+02 Score=30.84 Aligned_cols=98 Identities=23% Similarity=0.462 Sum_probs=62.4
Q ss_pred HHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHH
Q 008136 14 VLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIER 93 (576)
Q Consensus 14 ~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~ 93 (576)
++.|+.+-++-|+++-..|.+.+--+--++| ..|-||+.+|+..=+-++.|....+ .|.+++.++..
T Consensus 5 ~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~-~~lske~a~l~~iv~~~~~~~~~~~------------~l~~a~~~l~~ 71 (363)
T COG0216 5 LLEKLESLLERYEELEALLSDPEVISDPDEY-RKLSKEYAELEPIVEKYREYKKAQE------------DLEDAKEMLAE 71 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhc
Confidence 5677888888888888888766432322333 3577888888877666666643321 22222222211
Q ss_pred HHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 94 EMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 94 ~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
..|| |+.+....=|.+|+.+++.+|.++.-|
T Consensus 72 --------------------------~~D~------em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 72 --------------------------EKDP------EMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred --------------------------cCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1355 344555677899999999999999887
No 235
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=41.58 E-value=1.9e+02 Score=23.74 Aligned_cols=51 Identities=8% Similarity=0.370 Sum_probs=25.2
Q ss_pred HHHHHHHHhHHhHHHHHHHhh---cCCChhhHHHHHHHHHHHHHHHHHhHHHHH
Q 008136 13 RVLKKVQEGVDVFDSIWNKVY---DTDNANQKEKFEADLKKEIKKLQRYRDQIK 63 (576)
Q Consensus 13 r~LKKV~EGVe~Fd~iyeKl~---~a~n~nQKEKlE~DLKKEIKKLQRlRDQIK 63 (576)
..+++|...|+..+++.+.|. ..-+++.|-.|...|+.-=..|.+++.+++
T Consensus 25 ~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 25 SLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444444443 122556677777766555444554444443
No 236
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=41.38 E-value=70 Score=28.53 Aligned_cols=29 Identities=7% Similarity=0.071 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 008136 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWI 66 (576)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQRlRDQIKtWl 66 (576)
..+.+.++.+|...++.|.+++.+++.|.
T Consensus 79 ~~~~~~~~~~l~~~~~~L~~l~~~L~~~~ 107 (107)
T cd01111 79 EACLAQLRQKIEVRRAALNALTTQLAEMA 107 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45788999999999999999999999984
No 237
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=41.36 E-value=5.5e+02 Score=28.72 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=7.6
Q ss_pred HHHHHhhhCCCC
Q 008136 186 ELILRLLDNDEL 197 (576)
Q Consensus 186 E~lLRlLdNd~L 197 (576)
..|-..|.++.-
T Consensus 415 ~~l~~~l~~~~~ 426 (582)
T PF09731_consen 415 DALKSALDSGNA 426 (582)
T ss_pred HHHHHHHHcCCC
Confidence 456677777754
No 238
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=41.31 E-value=5.7e+02 Score=28.89 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHHhhcCCC----------------------hhhHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 008136 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDN----------------------ANQKEKFEADLKKEIKKLQRYRDQIKTWI 66 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n----------------------~nQKEKlE~DLKKEIKKLQRlRDQIKtWl 66 (576)
.|||+.|++|.+-+......+.+++.+-+ .=-++--|.+|.||.-=+...+.++|--+
T Consensus 87 ~el~~ele~l~~E~~~L~~~k~rle~~L~~~~~P~~ia~eCL~~RekR~~~dlv~D~Ve~EL~kE~eli~~~q~ll~~~~ 166 (421)
T KOG2685|consen 87 GELDRELEDLAAEIDDLLHEKRRLERALNALALPLSIAEECLAHREKRQGIDLVHDEVETELHKEVELIENIQELLKKTL 166 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhcccchhhccccHHHHHhHHHHHHHHHHHHHHHH
Confidence 69999999999999999998888773322 11245578899999988888888888665
Q ss_pred cccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 008136 67 QSSEIKDKKVSASYEQALVDARKLIEREM 95 (576)
Q Consensus 67 asneIKDK~~~a~~~~~L~E~RKlIE~~M 95 (576)
.--+ .....+.++|+.+|...
T Consensus 167 ~~a~--------~Ql~~nr~ar~~Le~Dl 187 (421)
T KOG2685|consen 167 ERAE--------EQLRLNREARQNLERDL 187 (421)
T ss_pred HHHH--------HHHHHhHHHHHHHhhhh
Confidence 4432 23346777788887654
No 239
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=41.20 E-value=4.4e+02 Score=27.56 Aligned_cols=41 Identities=15% Similarity=0.379 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHH
Q 008136 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR 57 (576)
Q Consensus 11 IDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQR 57 (576)
-++++|+|..|...=+++-.=|. +|-++|.+--|.+.+|-|
T Consensus 7 Y~~~vkR~~dG~~~C~el~~f~~------eRA~IE~~YAk~L~~lak 47 (258)
T cd07681 7 YRRTVKRIEDGYRLCNDLVSCFQ------ERAKIEKGYAQQLSDWAR 47 (258)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 47899999999998888776663 578888888887777763
No 240
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=41.17 E-value=2.6e+02 Score=31.03 Aligned_cols=62 Identities=8% Similarity=0.187 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHhhcCCC-hhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccch
Q 008136 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDN-ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEI 71 (576)
Q Consensus 10 EIDr~LKKV~EGVe~Fd~iyeKl~~a~n-~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneI 71 (576)
+.+...+.+.+-++..+..|+++..... +..++.+-.++++......+.++.+..++..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~l~~l~~~~~~ 148 (554)
T PRK15041 86 TVAELMQSASISLKQAEKNWADYEALPRDPRQSTAAAAEIKRNYDIYHNALAELIQLLGAGKI 148 (554)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 4667778888888889999999987653 3345557788999999998888999888877664
No 241
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=41.03 E-value=1.5e+02 Score=28.09 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHH----HHHHHHHHHHHHhhhCCCCC--hhhhhh
Q 008136 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH----KAHIMKLELILRLLDNDELS--PEQVND 204 (576)
Q Consensus 131 ~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRh----k~HI~kLE~lLRlLdNd~Ld--pe~V~d 204 (576)
..+||+++-+-=++=++.++.-++.. .. .+|+..+++| +-||.+||.|++.|.-.--. .+-+..
T Consensus 6 ~~~~L~d~y~aE~q~~~~l~~~~~~a---------~~-~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~g 75 (159)
T PF05974_consen 6 FIDELRDLYSAEKQLLKALPKLAEAA---------SS-PELKAALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEG 75 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC---------CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHH
Confidence 44566665554333344444444333 11 3555555555 68999999999999643311 244555
Q ss_pred hhHHHHHHHHh
Q 008136 205 VKDLLEDYVER 215 (576)
Q Consensus 205 IKEdIeyYVE~ 215 (576)
|-.+.+..++.
T Consensus 76 l~~e~~~~~~~ 86 (159)
T PF05974_consen 76 LVAEAQELIEE 86 (159)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 66666666655
No 242
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=40.86 E-value=6e+02 Score=29.58 Aligned_cols=95 Identities=20% Similarity=0.279 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHH----HhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCC
Q 008136 42 EKFEADLKKEIKKLQ----RYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQ 117 (576)
Q Consensus 42 EKlE~DLKKEIKKLQ----RlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~ 117 (576)
+|+--++-++|..|+ ++-++|+.-.- |--| .+.|-|.-|..-..--.|-..++.||-|.=+--|++.
T Consensus 263 ~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k---~s~~------i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~ 333 (622)
T COG5185 263 EKFVHIINTDIANLKTQNDNLYEKIQEAMK---ISQK------IKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLE 333 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHH
Confidence 455567777887776 44455543221 1111 1133344444444555677778888888777666653
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHhHh
Q 008136 118 QPKTDPKEKAKSETRDWLNNLVSELESQID 147 (576)
Q Consensus 118 ~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE 147 (576)
++.-.=.+|+|-.+-|+.-+|+|+.|++
T Consensus 334 --kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 334 --KLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred --HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2333334566777777777888877754
No 243
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=40.47 E-value=6.3e+02 Score=30.67 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCC
Q 008136 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQ 117 (576)
Q Consensus 83 ~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~ 117 (576)
.|.+....||..-|.--.++|+..+--|+-+++..
T Consensus 542 ~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~E~ 576 (809)
T KOG0247|consen 542 QLNDKKEQIEQLRDEIERLKKENLTTEYSIEILES 576 (809)
T ss_pred HHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Confidence 34444455666555555566666666666666643
No 244
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=39.92 E-value=1.9e+02 Score=33.90 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=48.3
Q ss_pred ChhhHHHHHHH------HHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008136 37 NANQKEKFEAD------LKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTK 108 (576)
Q Consensus 37 n~nQKEKlE~D------LKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTK 108 (576)
.+.+|+.|+.. +++.|+-|+-.++.++.|+..= +...+.....|.+.+..+..-|+.|..+=+++++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l----~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 281 (670)
T KOG0239|consen 208 AQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQAL----QQELEELKAELKELNDQVSLLTREVQEALKESNTL 281 (670)
T ss_pred hHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46668888874 7788899999999999993321 12234444567777777888888887777777776
No 245
>PF08376 NIT: Nitrate and nitrite sensing; InterPro: IPR013587 The nitrate and nitrite-sensing (NIT) domain is a (~250 aa) sensor domain found in various receptor components of signal transduction pathways from different bacterial lineages []. The NIT domain is predicted to be all alpha-helical in structure []. Proteins containing a NIT domain belong to one of four known classes of prokaryotic signal transduction proteins: intracellular transcription anti-termination regulators, sensor histidine kinases, methyl-accepting chemotaxis proteins, diguanylate cyclases/phosphodiesterases. NIT-containing receptors regulate cellular functions such as gene expression (transcription anti-terminators and histidine kinases), cell motility (chemotaxis receptors), and enzyme activity (diguanylate cyclases/phosphodiesterases), in response to changes in nitrate and/or nitrite concentrations. The NIT domain is found as both an extracellular and an intracellular sensor. The NIT domain can be found in combination with other signalling domains, such as ANTAR, HAMP (IPR003660 from INTERPRO), MCP, Hemerythrins (IPR002063 from INTERPRO), CHASE (IPR006189 from INTERPRO), GGDEF (IPR000160 from INTERPRO), PAS (IPR000014 from INTERPRO), EAL (IPR001633 from INTERPRO), HK (IPR005467 from INTERPRO), GAF, REC and Hpt (IPR008207 from INTERPRO).; PDB: 4AKK_A.
Probab=39.87 E-value=2e+02 Score=27.20 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=51.7
Q ss_pred HHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHH-HHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHH
Q 008136 16 KKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLK-KEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIERE 94 (576)
Q Consensus 16 KKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLK-KEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~ 94 (576)
.++..=+..++..++.+.......++..|+.-+. ..+++++++|++|-.=-.... .+.-.-.++....-..
T Consensus 157 ~~~~~~~~~~~~~l~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~W~~~~t~~ 228 (247)
T PF08376_consen 157 RQFASLIARQRAALESFQAAASPEQRALYDALLSSPAVQRVQRLRDQILSNGPGGG--------LSPIDAEEWFAAATAR 228 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHS-----HHHHHHHHHHHCS----S---------TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccCCC--------CCCCCHHHHHHHHHHH
Confidence 3344444445555555555566778888888877 789999999999876332111 1112557899999999
Q ss_pred HHHHHHHHhhh
Q 008136 95 MERFKICEKET 105 (576)
Q Consensus 95 MErFK~vEKE~ 105 (576)
++.++.||...
T Consensus 229 id~l~~ve~~l 239 (247)
T PF08376_consen 229 IDALRQVEDRL 239 (247)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999764
No 246
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=39.65 E-value=90 Score=26.44 Aligned_cols=86 Identities=23% Similarity=0.304 Sum_probs=40.8
Q ss_pred HHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHH
Q 008136 51 EIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSE 130 (576)
Q Consensus 51 EIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E 130 (576)
.|.|+++++.++..-.+. | ..|....+.++..++.-..++-+ ++-|=.-|=+-- ...+.+
T Consensus 3 ~~~~~~~l~~~l~~~~~q--~----------~~l~~~~~~~~~~~~eL~~l~~~--~~~y~~vG~~fv------~~~~~~ 62 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQ--I----------QQLERQLRELELTLEELEKLDDD--RKVYKSVGKMFV------KQDKEE 62 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH--H----------HHHHHHHHHHHHHHHHHHTSSTT---EEEEEETTEEE------EEEHHH
T ss_pred HHHHHHHHHHHHHHHHHH--H----------HHHHHHHHHHHHHHHHHHhCCCc--chhHHHHhHHHH------HhhHHH
Confidence 356666666666532221 1 13444444444444444444444 455655554321 223445
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 131 TRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 131 ~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
+..-|..-++.|...|+.++..++.+
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l 88 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYL 88 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554433
No 247
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.56 E-value=2.3e+02 Score=35.15 Aligned_cols=149 Identities=23% Similarity=0.280 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----hhhccccccccccC
Q 008136 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICE----KETKTKAFSKEGLG 116 (576)
Q Consensus 41 KEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vE----KE~KTKafSKEGL~ 116 (576)
..+++..|++=-++|-.+|--|... -.| ..+|+.+-+.+|.+...|+.== .|++|. .+|=..
T Consensus 673 ~~~~~~~~~~l~~~L~~~r~~i~~~------~~~------i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~--k~e~~~ 738 (1200)
T KOG0964|consen 673 VNESRSELKELQESLDEVRNEIEDI------DQK------IDQLNNNMQKVENDRNAFKREHEKLKRELNTI--KGEKSR 738 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH------HHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh--hhHHHH
Confidence 4456666666556665566544322 111 1377888888888888776422 222221 111111
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 008136 117 QQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 196 (576)
Q Consensus 117 ~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~ 196 (576)
.+..+-|+.+ .-.-|+..+..+..|.+.||+|+=+--. .+- -.+....+...+-.|.+|-.=+|.|-++.
T Consensus 739 v~~s~~~k~~----~Le~i~~~l~~~~~~~~~~e~el~sel~-----sqL-t~ee~e~l~kLn~eI~~l~~kl~~~~~er 808 (1200)
T KOG0964|consen 739 VQESLEPKGK----ELEEIKTSLHKLESQSNYFESELGSELF-----SQL-TPEELERLSKLNKEINKLSVKLRALREER 808 (1200)
T ss_pred HHHHhhHHHH----HHHHHHHHHHHHHHHHHhHHHHHhHHHH-----hhc-CHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 1111223222 2334566777778888888888633100 000 11335567777788888888888888877
Q ss_pred CChhhhhhhhHHHHHHHHhC
Q 008136 197 LSPEQVNDVKDLLEDYVERN 216 (576)
Q Consensus 197 Ldpe~V~dIKEdIeyYVE~n 216 (576)
++ +..+|..|++|+..|
T Consensus 809 ~~---~~~rk~~le~~l~~k 825 (1200)
T KOG0964|consen 809 ID---IETRKTALEANLNTK 825 (1200)
T ss_pred HH---HHHHHHHHHHHHHHH
Confidence 76 677888899988765
No 248
>PF00489 IL6: Interleukin-6/G-CSF/MGF family; InterPro: IPR003573 Interleukin-6 (IL6), also refered to as B-cell stimulatory factor-2 (BSF-2) and interferon beta-2, is a cytokine involved in a wide variety of biological functions []. It plays an essential role in the final differentiation of B-cells into IG-secreting cells, as well as inducing myeloma/plasmacytoma growth, nerve cell differentiation and, in hepatocytes, acute phase reactants [, ]. A number of other cytokines may be grouped with IL6 on the basis of sequence similarity [, , ]: these include granulocyte colony-stimulating factor (GCSF) and myelomonocytic growth factor (MGF). GCSF acts in hematopoiesis by affecting the production, differentiation and function of 2 related white cell groups in the blood []. MGF also acts in hematopoiesis, stimulating proliferation and colony formation of normal and transformed avian cells of the myeloid lineage. Cytokines of the IL6/GCSF/MGF family are glycoproteins of about 170 to 180 amino acid residues that contains four conserved cysteine residues involved in two disulphide bonds []. They have a compact, globular fold (similar to other interleukins), stabilised by the 2 disulphide bonds. One half of the structure is dominated by a 4 alpha-helix bundle with a left-handed twist []: the helices are anti-parallel, with 2 overhand connections, which fall into a 2-stranded anti-parallel beta-sheet. The fourth alpha-helix is important to the biological activity of the molecule []. It has been said [] that this family can be extended by the adjunction of LIF and OSM (see the relevant entry IPR001581 from INTERPRO) which seem to be structurally related.; GO: 0005125 cytokine activity, 0006955 immune response, 0005576 extracellular region; PDB: 1P9M_B 2IL6_A 1IL6_A 1ALU_A 3QWR_B 3DUH_C 3D85_C 3D87_C 1BGC_A 2L3Y_A ....
Probab=39.49 E-value=1.3e+02 Score=28.75 Aligned_cols=53 Identities=17% Similarity=0.314 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHH-HHhHHHHHhh
Q 008136 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKTW 65 (576)
Q Consensus 11 IDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKL-QRlRDQIKtW 65 (576)
-|.||.|+..|+-.|..+++-+.+- ...-++.. .+|+--++-| +-++.++|.+
T Consensus 52 ~e~CL~ri~~GL~~yq~lL~~l~~~-~~~~~~~v-~~Lq~~~~~L~~~i~~~~~~~ 105 (154)
T PF00489_consen 52 KETCLSRIHSGLQEYQILLKYLQGE-FPGLKENV-ESLQLDTKDLAQTIKQKMKNP 105 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTS-STTTHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-CccchhHH-HHHHHHHHHHHHHHHHHhhcc
Confidence 3789999999999999999877553 44334443 3455555555 3555566653
No 249
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=39.46 E-value=4.9e+02 Score=27.52 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 131 TRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 131 ~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
...+....|++|..+|..+++|++.|
T Consensus 194 ei~~~re~i~el~e~I~~L~~eV~~L 219 (258)
T PF15397_consen 194 EIVQFREEIDELEEEIPQLRAEVEQL 219 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666665
No 250
>PF14282 FlxA: FlxA-like protein
Probab=39.41 E-value=1.4e+02 Score=26.82 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHh
Q 008136 129 SETRDWLNNLVSELESQIDSFEAEL 153 (576)
Q Consensus 129 ~E~~~WL~~~IdeL~~QiE~~EaEi 153 (576)
.+-+.-|..-|..|+.||-.+..+.
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666665555554
No 251
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=39.35 E-value=98 Score=29.68 Aligned_cols=82 Identities=26% Similarity=0.304 Sum_probs=47.4
Q ss_pred HHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhccc------CCCCCchhHHHHHH
Q 008136 101 CEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKK------GKTRPPRLTHLETS 174 (576)
Q Consensus 101 vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK------~Kk~~~rl~eLe~~ 174 (576)
+|++--+-.=.++.+.. | .|-.|.++ .=|..-|+.+..-...++.|+..++.-| -.+...|+.+|+..
T Consensus 29 LEreLe~~q~~~e~~~~----d-aEn~k~ei-e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 29 LERELEMSQENKECLIL----D-AENSKAEI-ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHhHHHHHH----H-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555543 2 24444443 3377777777777777888888874321 11234567777777
Q ss_pred HHHHHHHHHHHHHH
Q 008136 175 ITRHKAHIMKLELI 188 (576)
Q Consensus 175 ieRhk~HI~kLE~l 188 (576)
..-...||..+|.-
T Consensus 103 ~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 103 NSSLENLLQEKEQE 116 (140)
T ss_pred hHHHHHHHHHHHHH
Confidence 77766777666654
No 252
>PF04943 Pox_F11: Poxvirus F11 protein; InterPro: IPR007027 These proteins belong to the poxvirus F11 family. They are early virus proteins.
Probab=39.25 E-value=1.4e+02 Score=32.82 Aligned_cols=93 Identities=15% Similarity=0.269 Sum_probs=56.4
Q ss_pred chhhhHHHHHHHHHHhHHhHHHHHHHhh-cCCChh----hHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhH
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVY-DTDNAN----QKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASY 80 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~iyeKl~-~a~n~n----QKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~ 80 (576)
|+-.++|+|..+.- =+.+|..+|+.++ +-.+.. -....+.=+.+-|+-|+..|+|+- .+++.+++-..-|-+
T Consensus 219 k~r~~lEk~y~~~~-~~~El~~~Yd~~~a~~~~~~~is~~~~rs~~i~~~~~~~le~m~k~~~--~~~~~~~~~~l~~~m 295 (366)
T PF04943_consen 219 KLRILLEKCYSRIC-MINELNHIYDSIYANHNNSRPISDIIKRSHDILTHGINNLEAMNKEAS--KAKNTIRPNSLKARM 295 (366)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCccHHHHHhcchHHHHhhhhhccchhhhhh--hccCCCChhHHHHHH
Confidence 45566666665554 4566777777776 322221 255667778999999999997765 455566644422333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008136 81 EQALVDARKLIEREMERFKIC 101 (576)
Q Consensus 81 ~~~L~E~RKlIE~~MErFK~v 101 (576)
.+-+.+-++.|.+.-|.|+.+
T Consensus 296 ~~Dv~el~~~i~elwde~~~l 316 (366)
T PF04943_consen 296 EKDVNELLKSIPELWDEIKNL 316 (366)
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 345566666666666655443
No 253
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=39.14 E-value=2.7e+02 Score=26.61 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008136 83 ALVDARKLIEREMERFK 99 (576)
Q Consensus 83 ~L~E~RKlIE~~MErFK 99 (576)
.|.+.+|.+|.+.+++|
T Consensus 65 rL~~rkk~~e~~~~~Lk 81 (162)
T PF05565_consen 65 RLQERKKSIENRIDRLK 81 (162)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555553
No 254
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=38.84 E-value=4.5e+02 Score=26.98 Aligned_cols=43 Identities=16% Similarity=0.336 Sum_probs=20.4
Q ss_pred HHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 008136 141 ELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLE 186 (576)
Q Consensus 141 eL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE 186 (576)
..+.+++..+..+..+. ......++..++..+++.+..+.+++
T Consensus 156 ~a~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~a~ 198 (331)
T PRK03598 156 QAQATLKSAQDKLSQYR---EGNRPQDIAQAKASLAQAQAALAQAE 198 (331)
T ss_pred HHHHHHHHHHHHHHHHH---ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555544432 11223445555666666555555443
No 255
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.78 E-value=9.1e+02 Score=30.49 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhHHHHHhhhcccchh----h----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008136 47 DLKKEIKKLQRYRDQIKTWIQSSEIK----D----KKVSASYEQALVDARKLIEREMERFKICEKETK 106 (576)
Q Consensus 47 DLKKEIKKLQRlRDQIKtWlasneIK----D----K~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~K 106 (576)
|||-++-=.++=+++.++-+..++-- | +.......+.+.+.++.+-..|+..+.+|+-||
T Consensus 712 ~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~ 779 (1174)
T KOG0933|consen 712 DLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMK 779 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666666666666666666555321 0 000112233455555555566666666676665
No 256
>PRK04654 sec-independent translocase; Provisional
Probab=38.77 E-value=4.7e+02 Score=27.13 Aligned_cols=52 Identities=25% Similarity=0.219 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008136 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 190 (576)
Q Consensus 130 E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLR 190 (576)
++..+|-..|.++++.+..+..|++.- -++++|+..++..+.-+..++.-||
T Consensus 27 e~aRtlGk~irk~R~~~~~vk~El~~E---------l~~~ELrk~l~~~~~~i~~~~~~lk 78 (214)
T PRK04654 27 KAARFAGLWVRRARMQWDSVKQELERE---------LEAEELKRSLQDVQASLREAEDQLR 78 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666665442 2244555555554444444443333
No 257
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=38.68 E-value=2.8e+02 Score=24.48 Aligned_cols=87 Identities=26% Similarity=0.345 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCC
Q 008136 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKT 121 (576)
Q Consensus 42 EKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~ 121 (576)
+.|+.-.++|+..+-+=|+ |. .+|.+.=++|+.+.+|-..-+.+ .-.....+
T Consensus 13 ~~l~~~~~~Ef~~I~~Er~----------v~---------~kLneLd~Li~eA~~r~~~~~~~---------~~~~~~~l 64 (109)
T PF03980_consen 13 EFLEENCKKEFEEILEERD----------VV---------EKLNELDKLIEEAKERKNSGERE---------KPVWRHSL 64 (109)
T ss_pred HHHHHHHHHHHHHHHHHhh----------HH---------HHHHHHHHHHHHHHHhHhccccC---------CCCCCCCC
Confidence 4556666666665554443 22 36778888888888776432222 11223457
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 122 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 122 DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
+|.+--+......+...++.|+..++.++.+-+.|
T Consensus 65 ~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L 99 (109)
T PF03980_consen 65 TPEEDIRAHLAPYKKKEREQLNARLQELEEENEAL 99 (109)
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89988888888888888888888888888877666
No 258
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=38.65 E-value=79 Score=27.72 Aligned_cols=78 Identities=27% Similarity=0.342 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHH
Q 008136 134 WLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYV 213 (576)
Q Consensus 134 WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYV 213 (576)
-|...|.+|+.|++.++.++..+..+- ....-.--+-||..| -+-++|||-=.-.|
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~l----------~~~~~~~v~~hI~lL--------------heYNeiKD~gQ~Li 59 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAEL----------IEDPEKIVKRHIKLL--------------HEYNEIKDIGQGLI 59 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc----------ccCHHHHHHHHHHHH--------------HHHhHHHHHHHHHH
Confidence 355667788888888888877662211 011122234466665 34456666544444
Q ss_pred HhCCC-CccccCCccccccCCCCCCc
Q 008136 214 ERNQD-DFEEFSDVDELYHLLPLDKV 238 (576)
Q Consensus 214 E~nqd-DF~E~~dde~iYd~L~Lde~ 238 (576)
--=.+ -.+ ..-+||++|||+..
T Consensus 60 g~iA~~rgv---t~~~v~~e~gl~~~ 82 (83)
T PF07061_consen 60 GLIADQRGV---TVKDVYEEFGLDMN 82 (83)
T ss_pred HHHHHHcCC---cHHHHHHHcCCCCC
Confidence 22211 112 23578888888753
No 259
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=38.61 E-value=50 Score=37.17 Aligned_cols=52 Identities=21% Similarity=0.392 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHh
Q 008136 8 QGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKT 64 (576)
Q Consensus 8 Q~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKt 64 (576)
+..|+.+|+=+.|-|+.|+.--+.++ ....|+ -+.|+.|||.|+.+-.+|..
T Consensus 135 ~~~l~~ll~Pl~e~l~~f~~~v~~~~---~~~~~~--~~~L~~qi~~L~~~n~~i~~ 186 (475)
T PRK10361 135 RQSLNSLLSPLREQLDGFRRQVQDSF---GKEAQE--RHTLAHEIRNLQQLNAQMAQ 186 (475)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999997554444 333344 38999999999998888865
No 260
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=38.56 E-value=6.1e+02 Score=29.91 Aligned_cols=48 Identities=17% Similarity=0.349 Sum_probs=36.4
Q ss_pred ccchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHH
Q 008136 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR 57 (576)
Q Consensus 4 ~RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQR 57 (576)
-|.++...+.+...++.|++.++.|-+=+ .-|-..|-++++-...|++
T Consensus 9 ~~~~~d~~~~~~~~~q~gL~~le~~~~~~------~era~~ek~y~~~l~~l~~ 56 (640)
T KOG3565|consen 9 LRELKDAFKATEQSTQNGLDWLERIVQFL------KERADKEKEYEEKLRSLCK 56 (640)
T ss_pred HHHHHhHHHHHHHHHhhhHHHHHHHHHHh------cchhHHHHHHHHHHHHhhh
Confidence 46778888999999999999999876544 2255666677777777776
No 261
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=38.35 E-value=1.4e+02 Score=26.80 Aligned_cols=32 Identities=34% Similarity=0.540 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
|....++..||..-|+.|+.+++.++.++..+
T Consensus 82 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l 113 (129)
T cd00584 82 EKDLEEAIEFLDKKIEELTKQIEKLQKELAKL 113 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999888887665
No 262
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=37.91 E-value=6e+02 Score=28.24 Aligned_cols=12 Identities=33% Similarity=0.684 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHh
Q 008136 47 DLKKEIKKLQRY 58 (576)
Q Consensus 47 DLKKEIKKLQRl 58 (576)
.|+++|++|++-
T Consensus 75 ~l~~~l~~l~~~ 86 (525)
T TIGR02231 75 ELRKQIRELEAE 86 (525)
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 263
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=37.90 E-value=2.4e+02 Score=27.99 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 008136 83 ALVDARKLIEREM 95 (576)
Q Consensus 83 ~L~E~RKlIE~~M 95 (576)
.|...|..-++.|
T Consensus 179 ~~~~~~~~~~~~~ 191 (236)
T cd07651 179 ALRELNEIWNREW 191 (236)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555555
No 264
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=37.90 E-value=5.4e+02 Score=32.13 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhh
Q 008136 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKD 73 (576)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKD 73 (576)
..|||+|..++.+.|++--+.|.|-=.|+-..=-|+
T Consensus 705 ~~qkee~~~~~~~~I~~~~~~~~~~~~~~~~~~~k~ 740 (1072)
T KOG0979|consen 705 DRQEEEYAASEAKKILDTEDMRIQSIRWHLELTDKH 740 (1072)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999888886654443
No 265
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.90 E-value=1.9e+02 Score=29.83 Aligned_cols=25 Identities=16% Similarity=0.517 Sum_probs=21.4
Q ss_pred CCCCChhhhhhhhHHHHHHHHhCCC
Q 008136 194 NDELSPEQVNDVKDLLEDYVERNQD 218 (576)
Q Consensus 194 Nd~Ldpe~V~dIKEdIeyYVE~nqd 218 (576)
...|.-++|++|+|+++.|+|.+.+
T Consensus 120 ykkvnId~IedlQDem~Dlmd~a~E 144 (218)
T KOG1655|consen 120 YKKVNIDKIEDLQDEMEDLMDQADE 144 (218)
T ss_pred HccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999987654
No 266
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=37.81 E-value=1.4e+02 Score=33.47 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=32.3
Q ss_pred HHHHHhHhhHHHHhhhhh-------cccCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008136 140 SELESQIDSFEAELEGLT-------VKKGKTRPPRLTHLETSITRHKAHIMKLELILR 190 (576)
Q Consensus 140 deL~~QiE~~EaEiE~Ls-------~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLR 190 (576)
|+||.-+|...+||-.|. .|--=..-+|--++++.+|-.+-||.|||+..-
T Consensus 313 EqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl~qq 370 (455)
T KOG3850|consen 313 EQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKLELQQQ 370 (455)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556655551 110011235666899999999999999998764
No 267
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.70 E-value=40 Score=34.54 Aligned_cols=133 Identities=23% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhH-HHHhhhh----------hcccCCCCCchhHHHHHHHHHHHHHHHHHHH------HHHh
Q 008136 129 SETRDWLNNLVSELESQIDSF-EAELEGL----------TVKKGKTRPPRLTHLETSITRHKAHIMKLEL------ILRL 191 (576)
Q Consensus 129 ~E~~~WL~~~IdeL~~QiE~~-EaEiE~L----------s~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~------lLRl 191 (576)
.|+.+-|..--+-|+++|+.- |...... ..||||.-...+.++...+.+..+...-||. +|+.
T Consensus 27 rEteemL~KKqe~Le~ki~~e~e~~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~ 106 (221)
T KOG1656|consen 27 RETEEMLEKKQEFLEKKIEQEVENNARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDA 106 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHH
Q ss_pred hhCC---------CCChhhhhhhhHHHHHHHHhCCC--C-------ccccCCccccccCC-CCCCccccccccccC-CCC
Q 008136 192 LDND---------ELSPEQVNDVKDLLEDYVERNQD--D-------FEEFSDVDELYHLL-PLDKVESLEDLVTIG-PPG 251 (576)
Q Consensus 192 LdNd---------~Ldpe~V~dIKEdIeyYVE~nqd--D-------F~E~~dde~iYd~L-~Lde~e~~~~~~~~~-p~~ 251 (576)
|..+ ..|.|+|+++=|+|..-.+..++ | |-.+-|+|++-.+| .|+.++....+..+. |+.
T Consensus 107 m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v 186 (221)
T KOG1656|consen 107 MGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDKELLDIRAPPV 186 (221)
T ss_pred HHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q ss_pred CCCCCCchhh
Q 008136 252 LVKGAPALSL 261 (576)
Q Consensus 252 ~~~~~~~~~~ 261 (576)
.++..|...+
T Consensus 187 ~LP~vPs~~l 196 (221)
T KOG1656|consen 187 PLPDVPSIAL 196 (221)
T ss_pred CCCCCCcccc
No 268
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=37.66 E-value=1.4e+02 Score=25.96 Aligned_cols=44 Identities=16% Similarity=0.346 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCC----CCChhhhhhhhHHHHH
Q 008136 168 LTHLETSITRHKAHIMKLELILRLLDND----ELSPEQVNDVKDLLED 211 (576)
Q Consensus 168 l~eLe~~ieRhk~HI~kLE~lLRlLdNd----~Ldpe~V~dIKEdIey 211 (576)
..+|...++-..|-+.-||.-++.++.+ .|++++|..=+..|..
T Consensus 41 ~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~ 88 (97)
T PF09177_consen 41 KRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSA 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHH
Confidence 5588889999999999999999999988 6777777765555443
No 269
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=37.44 E-value=11 Score=43.16 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008136 142 LESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 192 (576)
Q Consensus 142 L~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlL 192 (576)
++..+..+|.|-..|..+......+++..|+..++..+.-..+||.-.+..
T Consensus 457 l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~ 507 (713)
T PF05622_consen 457 LRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREA 507 (713)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455554444222222223455666666666666666666555543
No 270
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=37.33 E-value=4.6e+02 Score=26.63 Aligned_cols=31 Identities=29% Similarity=0.502 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 126 KAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 126 keK~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
+-|.++..|...-|++|+.++.....++..+
T Consensus 184 ~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~ 214 (312)
T PF00038_consen 184 KNREELEEWYQSKLEELRQQSEKSSEELESA 214 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccccccccccccccccccchh
Confidence 3567888999999999999988888777766
No 271
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=37.29 E-value=6.3e+02 Score=28.23 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=10.7
Q ss_pred hhhhHHHHHHHHhCCC-Cc
Q 008136 203 NDVKDLLEDYVERNQD-DF 220 (576)
Q Consensus 203 ~dIKEdIeyYVE~nqd-DF 220 (576)
.-|-|-|..|-|.+.+ -|
T Consensus 92 qPLF~Ti~eyse~~~~kkF 110 (379)
T PF11593_consen 92 QPLFDTIPEYSEKYNSKKF 110 (379)
T ss_pred chHHhhhHHHhcccCCccc
Confidence 3445557777777644 44
No 272
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=37.08 E-value=3.7e+02 Score=30.79 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhHhhHHHH
Q 008136 134 WLNNLVSELESQIDSFEAE 152 (576)
Q Consensus 134 WL~~~IdeL~~QiE~~EaE 152 (576)
=+++.+|.|.+||++.=-.
T Consensus 443 e~~q~lddlDkqI~qaYvK 461 (516)
T KOG4191|consen 443 EFQQVLDDLDKQIEQAYVK 461 (516)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3477888888888765433
No 273
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=37.06 E-value=2.1e+02 Score=27.65 Aligned_cols=24 Identities=13% Similarity=0.479 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 133 DWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 133 ~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
+++...+++.+.++..++.-...+
T Consensus 71 ~~~~~~l~ea~~~i~~i~~~~~~i 94 (199)
T PF10112_consen 71 EYIREILEEAKEKIRRIEKAIKRI 94 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 357777888888887777776555
No 274
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=36.97 E-value=4.6e+02 Score=27.80 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHh---HH----HHHhhhcccchhhhh
Q 008136 46 ADLKKEIKKLQRY---RD----QIKTWIQSSEIKDKK 75 (576)
Q Consensus 46 ~DLKKEIKKLQRl---RD----QIKtWlasneIKDK~ 75 (576)
..|+.-++||.++ |. .+|.-..++||.+|=
T Consensus 195 ~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~~DDI~~~l 231 (339)
T cd09238 195 GTLRSNLEELEALGNERAGIEDMMKALKRNDNILAKV 231 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHH
Confidence 5555555555433 32 344455567776443
No 275
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=36.86 E-value=4.4e+02 Score=26.81 Aligned_cols=15 Identities=0% Similarity=0.022 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhH
Q 008136 132 RDWLNNLVSELESQI 146 (576)
Q Consensus 132 ~~WL~~~IdeL~~Qi 146 (576)
..||.+++-.+..-+
T Consensus 203 l~~lk~~L~~y~~~~ 217 (233)
T cd07649 203 IEMIRQHLCQYTQLR 217 (233)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356666666555544
No 276
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=36.72 E-value=12 Score=43.01 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhhHHHHhhhh
Q 008136 135 LNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 135 L~~~IdeL~~QiE~~EaEiE~L 156 (576)
+..-|+++++||..++.++...
T Consensus 361 ~~~qle~~k~qi~eLe~~l~~~ 382 (713)
T PF05622_consen 361 LKSQLEEYKKQIQELEQKLSEE 382 (713)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666665443
No 277
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=36.60 E-value=74 Score=31.72 Aligned_cols=52 Identities=27% Similarity=0.367 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccc-chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008136 46 ADLKKEIKKLQRYRDQIKTWIQSS-EIKDKKVSASYEQALVDARKLIEREMERFKICEKE 104 (576)
Q Consensus 46 ~DLKKEIKKLQRlRDQIKtWlasn-eIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE 104 (576)
.-|++|=+-|+..++.++.--..- .|+|+. ...+.-++++.=.+||+....-
T Consensus 82 k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d~~-------~k~qa~~l~~~~~~ry~~~~~l 134 (204)
T PF10368_consen 82 KELKKEKEAIEKAKEEFKKAKKYIDKIEDEK-------LKKQAKELNEAMKKRYKSYDKL 134 (204)
T ss_dssp HHHHHHHHHHHHHHHHHTT----------HH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666777777777554433 577777 5555666666666677655543
No 278
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=36.57 E-value=8.7e+02 Score=30.03 Aligned_cols=38 Identities=29% Similarity=0.246 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHh---hhc-----cccccccccCCCCCCChh
Q 008136 87 ARKLIEREMERFKICEK---ETK-----TKAFSKEGLGQQPKTDPK 124 (576)
Q Consensus 87 ~RKlIE~~MErFK~vEK---E~K-----TKafSKEGL~~~~K~DP~ 124 (576)
.|+++|.+-=+||.++. .+| .|.+.+-+|....++||.
T Consensus 620 ~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d 665 (988)
T KOG2072|consen 620 KRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDAD 665 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHH
Confidence 46666666556666532 233 456666666555666664
No 279
>PRK10869 recombination and repair protein; Provisional
Probab=36.44 E-value=6.9e+02 Score=28.42 Aligned_cols=47 Identities=19% Similarity=0.303 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh-hhCCCCChhhhhhhhHHHHHHH
Q 008136 167 RLTHLETSITRHKAHIMKLELILRL-LDNDELSPEQVNDVKDLLEDYV 213 (576)
Q Consensus 167 rl~eLe~~ieRhk~HI~kLE~lLRl-LdNd~Ldpe~V~dIKEdIeyYV 213 (576)
++.++...++.-.+.+..+-.-|+. ++.=..||+.+++|.+.+..+-
T Consensus 262 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~ 309 (553)
T PRK10869 262 KLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQI 309 (553)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 3445555555555555555444432 3333677777777776555443
No 280
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=36.44 E-value=4.9e+02 Score=26.74 Aligned_cols=39 Identities=23% Similarity=0.418 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHH
Q 008136 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIER 93 (576)
Q Consensus 47 DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~ 93 (576)
|||.-+..|+++.+.|..=+..-+=.+| -|.|+++.++.
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~~e~ee~--------~L~e~~kE~~~ 43 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVESLENEEK--------CLEEYRKEMEE 43 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 3444444444444444443333332222 46666665554
No 281
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=36.35 E-value=80 Score=32.47 Aligned_cols=52 Identities=27% Similarity=0.447 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHhHHhHHHHH----HHhh-------cCCChhhHHHHHHHHHHHHHHHHHhHHHH
Q 008136 9 GEIDRVLKKVQEGVDVFDSIW----NKVY-------DTDNANQKEKFEADLKKEIKKLQRYRDQI 62 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iy----eKl~-------~a~n~nQKEKlE~DLKKEIKKLQRlRDQI 62 (576)
.||+.++.+=++..+.+.+ | .|+. ...+.+ -+-|..-||+||+.|.+-|+.+
T Consensus 144 ~eve~il~~~e~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~-~~sF~~~l~~ql~~l~~~r~e~ 206 (219)
T PRK13415 144 KEIEEILAQHEERLESKAE-WSRWGQKLRDQWKGKSKQKQTT-LPSFSALLKEELKELKEKRSEG 206 (219)
T ss_pred HHHHHHHHHHHHhhhhhhc-hHHHHHHHHHhhhccccCCCCC-CccHHHHHHHHHHHHHHHHHHH
Confidence 6899999988887655444 4 2221 112222 3679999999999999999876
No 282
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=36.32 E-value=3.4e+02 Score=24.87 Aligned_cols=114 Identities=11% Similarity=0.085 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCC
Q 008136 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120 (576)
Q Consensus 41 KEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K 120 (576)
+++.|...+.++-+.++..++...=+ ..|.++|.-.+..+.. -...|+
T Consensus 14 ~~~~ee~a~~~L~~a~~~~~~~~~~L---------------~~L~~~~~~~~~~~~~------------~~~~g~----- 61 (146)
T PRK07720 14 KENEKEKALGEYEEAVSRFEQVAEKL---------------YELLKQKEDLEQAKEE------------KLQSGL----- 61 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH------------HhhCCC-----
Confidence 77888888888888887777655422 2455666555554422 113343
Q ss_pred CChhH-HHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008136 121 TDPKE-KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELI 188 (576)
Q Consensus 121 ~DP~E-keK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~l 188 (576)
++.+ ..-..-...|.+.|......|..++.++|.....=- ....+...++...+|+..+....|..
T Consensus 62 -~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~-ea~~~~k~~ekLker~~~~~~~~e~r 128 (146)
T PRK07720 62 -SIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDLT-EKNIEVKKYEKMKEKKQEMFALEEKA 128 (146)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 344566778888888888889999999887521000 00112335566666666655555443
No 283
>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]
Probab=36.04 E-value=6e+02 Score=27.97 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh
Q 008136 166 PRLTHLETSITRHKAHIMKLELILRL 191 (576)
Q Consensus 166 ~rl~eLe~~ieRhk~HI~kLE~lLRl 191 (576)
+||..+...+.+.+.||.-+=.-||-
T Consensus 140 eRia~~cnaL~qYkqhIelfG~nLrq 165 (421)
T KOG4429|consen 140 ERIAHCCNALGQYKQHIELFGPNLRQ 165 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 47899999999999999877554443
No 284
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=35.94 E-value=3.5e+02 Score=26.83 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=14.4
Q ss_pred HHHHHHHHHhHhhHHHHhhhhh
Q 008136 136 NNLVSELESQIDSFEAELEGLT 157 (576)
Q Consensus 136 ~~~IdeL~~QiE~~EaEiE~Ls 157 (576)
.+-|+.|..-|..++..+|-++
T Consensus 78 ~eelerLe~~iKdl~~lye~Vs 99 (157)
T COG3352 78 KEELERLEENIKDLVSLYELVS 99 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777766664
No 285
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=35.81 E-value=56 Score=28.54 Aligned_cols=32 Identities=34% Similarity=0.540 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
|+...++.+||..-|+.|+.+++.++.++..+
T Consensus 72 E~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~ 103 (120)
T PF02996_consen 72 EMSLEEAIEFLKKRIKELEEQLEKLEKELAEL 103 (120)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999888886555
No 286
>PF06729 CENP-R: Kinetochore component, CENP-R; InterPro: IPR009601 This family consists of mammalian nuclear receptor co-activator NRIF3 proteins. NRIF3 exhibits a distinct receptor specificity in interacting with and potentiating the activity of only TRs and RXRs but not other examined nuclear receptors. NRIF3 as a coregulator that possesses both transactivation and transrepression domains and/or functions. Collectively, the NRIF3 family of coregulators may play dual roles in mediating both positive and negative regulatory effects on gene expression [].
Probab=35.80 E-value=93 Score=30.13 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHH---------HHHHHHHHHHHhHHHHHhh
Q 008136 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEA---------DLKKEIKKLQRYRDQIKTW 65 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~---------DLKKEIKKLQRlRDQIKtW 65 (576)
-+++-++-||.--.+.|=+||+.+.+...-.---.||+ +||.|++|-|-|=-++..|
T Consensus 59 D~fm~L~SkvekS~eeime~~qnL~slQALeGsreLEnLiGvs~sSc~Lk~ElqKTkeLmtkv~k~ 124 (139)
T PF06729_consen 59 DEFMVLLSKVEKSLEEIMEIRQNLSSLQALEGSRELENLIGVSCSSCDLKRELQKTKELMTKVEKQ 124 (139)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999875543332334554 8999999988776665544
No 287
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=35.80 E-value=1.2e+02 Score=29.65 Aligned_cols=43 Identities=28% Similarity=0.330 Sum_probs=32.3
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchh
Q 008136 26 DSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIK 72 (576)
Q Consensus 26 d~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIK 72 (576)
-.+|.++++.=.+.||.+|..-+.+.+.+||+ |-.|+.++..|
T Consensus 120 ~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~~----~~~~~~~~~~~ 162 (162)
T PRK12751 120 AKVRNQMYNLLTPEQKEALNKKHQERIEKLQQ----KPAAQPSSAQK 162 (162)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh----ccccccCccCC
Confidence 34555666666999999999999998877753 66888776543
No 288
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=35.79 E-value=44 Score=36.00 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCC--CCChhhhhhhhHHHHHHH
Q 008136 168 LTHLETSITRHKAHIMKLELILRLLDND--ELSPEQVNDVKDLLEDYV 213 (576)
Q Consensus 168 l~eLe~~ieRhk~HI~kLE~lLRlLdNd--~Ldpe~V~dIKEdIeyYV 213 (576)
.+.....|.+++.++..|-.-|+.+..+ ..+.+.+++++++|+..-
T Consensus 34 Q~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 34 QDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERR 81 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHH
Confidence 3445567888888888888888888654 244677778887776643
No 289
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=35.77 E-value=4.7e+02 Score=26.24 Aligned_cols=30 Identities=10% Similarity=0.198 Sum_probs=24.0
Q ss_pred ccchhhhHHHHHHHHHHhHHhHHHHHHHhh
Q 008136 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVY 33 (576)
Q Consensus 4 ~RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~ 33 (576)
.+.+..+|+++-+.+..+......+..++.
T Consensus 79 ~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~ 108 (296)
T PF13949_consen 79 NASLRKELQKYREYLEQASESDSQLRSKLE 108 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 356788888888888888888888887775
No 290
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=35.73 E-value=91 Score=36.83 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008136 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICE 102 (576)
Q Consensus 41 KEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vE 102 (576)
-++...+.+-+++-|+ -|...|+| .|+.+|+.|-+.|.--|.|.
T Consensus 284 h~~TTeEi~~cc~DLk--------VLGkkd~r----------~iLrWRk~ire~l~~~~~v~ 327 (780)
T KOG1098|consen 284 HKKTTEEILECCKDLK--------VLGKKDFR----------VILRWRKKIRETLGEQKKVV 327 (780)
T ss_pred CccCcHHHHHHHHHhh--------hhChHHHH----------HHHHHHHHHHHHhccccccc
Confidence 4455566666666666 34555666 89999999998886554443
No 291
>COG3945 Uncharacterized conserved protein [Function unknown]
Probab=35.55 E-value=1e+02 Score=31.21 Aligned_cols=51 Identities=14% Similarity=0.402 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHhhhCCCCChhhhhhhhHHHHHHHHhCCC
Q 008136 168 LTHLETSITRHKAHIMKLEL---ILRLLDNDELSPEQVNDVKDLLEDYVERNQD 218 (576)
Q Consensus 168 l~eLe~~ieRhk~HI~kLE~---lLRlLdNd~Ldpe~V~dIKEdIeyYVE~nqd 218 (576)
++-+..+.+-|.+=+.-|.. ++.++.||.|+++.|..|-|.|.-|++..--
T Consensus 7 m~~i~~lvEeH~yIlraL~iLr~~~~~~~~g~i~y~~v~~iidFi~nfaDkcHH 60 (189)
T COG3945 7 MDSIKLLVEEHTYILRALSILRKALDLIKNGPIDYSDVKEIIDFIRNFADKCHH 60 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhccc
Confidence 34456677888877776644 4566778999999999999999999987643
No 292
>PF04220 YihI: Der GTPase activator (YihI); InterPro: IPR007336 This entry contains Escherichia coli (strain K12) YihI. YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor and can therefore be considered a GAP (GTPase activating)-like protein. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI []. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit []. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI [].
Probab=35.36 E-value=45 Score=32.95 Aligned_cols=33 Identities=33% Similarity=0.529 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhCCC-CChhh---hhhhhHHHHHHHHh
Q 008136 183 MKLELILRLLDNDE-LSPEQ---VNDVKDLLEDYVER 215 (576)
Q Consensus 183 ~kLE~lLRlLdNd~-Ldpe~---V~dIKEdIeyYVE~ 215 (576)
.+|..||..|++|+ |+.++ |+.--+.|+..++.
T Consensus 108 ~rL~~LLdrle~Ge~Ls~~dQ~yvD~~LdRi~~Lm~~ 144 (169)
T PF04220_consen 108 ERLNQLLDRLEEGETLSAEDQKYVDEKLDRIEELMEE 144 (169)
T ss_pred HHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999998 66544 33444555555543
No 293
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.98 E-value=7.3e+02 Score=29.51 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=5.6
Q ss_pred HHHHHHHHhhhCCC
Q 008136 183 MKLELILRLLDNDE 196 (576)
Q Consensus 183 ~kLE~lLRlLdNd~ 196 (576)
..|+.+-+|.-.|.
T Consensus 505 ~~l~k~~~lE~sG~ 518 (652)
T COG2433 505 AELRKMRKLELSGK 518 (652)
T ss_pred HHHHHHHhhhhcCC
Confidence 33333333333454
No 294
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=34.86 E-value=1e+02 Score=31.93 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=26.8
Q ss_pred cchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHH
Q 008136 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEA 46 (576)
Q Consensus 5 RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~ 46 (576)
++||+|++++++.+.----.|+..+...+.+ |+|++.
T Consensus 120 ~~lq~el~~~~~eL~ksKK~Y~~~~~~~~~a-----r~K~~~ 156 (264)
T cd07654 120 QRAQAEVQQTVRELSKSRKTYFEREQVAHLA-----REKAAD 156 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHH
Confidence 5788888888888888888887665544333 777774
No 295
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=34.81 E-value=90 Score=33.67 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 008136 129 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 195 (576)
Q Consensus 129 ~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd 195 (576)
.+..+-|..-+++|+.+++.++..++... +...++.+++..++.+.-.|..++.++.-=.++
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~-----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~ 302 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP-----KKKNKLKELEEQLASLEKRIEEAEELIAEYGDE 302 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 34455566667777777777777766553 333456788888888888888888776644443
No 296
>PRK09546 zntB zinc transporter; Reviewed
Probab=34.70 E-value=3.7e+02 Score=27.81 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008136 133 DWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (576)
Q Consensus 133 ~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdN 194 (576)
+-....+++|+.++|.+|.++-. .......++-.++..+-+.+-++.-+..++..|.+
T Consensus 153 d~~~~~l~~i~~~ld~lE~~l~~----~~~~~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~ 210 (324)
T PRK09546 153 DHASEFIEELHDKIIDLEDNLLD----QQIPPRGELALLRKQLIVMRRYMAPQRDVFARLAS 210 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555666666666555421 11112247889999999988888888888876654
No 297
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.70 E-value=7.9e+02 Score=28.90 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=20.9
Q ss_pred hhHHHHHHH---HHHHHHHHHHHHHHHHhhhccccccccccC
Q 008136 78 ASYEQALVD---ARKLIEREMERFKICEKETKTKAFSKEGLG 116 (576)
Q Consensus 78 a~~~~~L~E---~RKlIE~~MErFK~vEKE~KTKafSKEGL~ 116 (576)
+.|+.+|.. .=...|.+.|+-+.-..+-| |.--++|++
T Consensus 290 ~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk-~~Ie~Q~iS 330 (581)
T KOG0995|consen 290 QHMEKKLEMLKSEIEEKEEEIEKLQKENDELK-KQIELQGIS 330 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCC
Confidence 444444444 44445566667666666666 344555664
No 298
>PF00669 Flagellin_N: Bacterial flagellin N-terminal helical region; InterPro: IPR001029 Bacterial flagella are responsible for motility and chemotaxis []. They comprise a basal body, a hook and a filament, the latter accounting for 98% of the mass []. Flagellin is the subunit protein that polymerises to form the flagellae [], the subunits being transported through the centre of the filament to the tip, where they then polymerise []. Both the N- and C- termini of the subunit protein, which are alpha-helical in structure [], are required to mediate polymerisation. Although no export or assembly consensus sequences have been identified, Ala, Val, Leu, Ile, Gly, Ser, Thr, Asn, Gln and Asp tend to make up around 90% of the sequence, Cys and Trp being absent []. This entry represents the N and C termini that come together to form the D0 and D1 structural domains []. These domains are responsible for flagellin's ability to polymerise into a filament. ; GO: 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum; PDB: 1IO1_A 1UCU_A 3A5X_A 3V47_C 2D4X_A 3PWX_B 3K8V_A 2ZBI_B 3K8W_A.
Probab=34.59 E-value=3.3e+02 Score=24.22 Aligned_cols=63 Identities=16% Similarity=0.321 Sum_probs=43.4
Q ss_pred ccchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhh
Q 008136 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDK 74 (576)
Q Consensus 4 ~RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK 74 (576)
..++|.+|+++-.+|.-|. |+.........--.=..|+++|..|..+.+.|.....--++-|.
T Consensus 14 l~~~~~~l~~~~~qlsTG~--------k~~~~sd~p~~~~~~~~l~~~~~~~~~~~~n~~~~~~~l~~~~~ 76 (139)
T PF00669_consen 14 LNKLQSNLNKLQEQLSTGK--------KINSPSDDPAAASRALSLRSQISRLEQYQRNIDDAKSRLSTAET 76 (139)
T ss_dssp HHHHHHHHHHHHHHHHTS----------TTTCGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC--------CcccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888874 55444444445666678999999999998888765554444433
No 299
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=34.56 E-value=32 Score=39.11 Aligned_cols=28 Identities=36% Similarity=0.677 Sum_probs=21.6
Q ss_pred chhHHHHHHHHHHHHHhcccccC------------CCCC-CC
Q 008136 526 PDQREKFLQRLQQVQQQGHSNLL------------GMPL-GG 554 (576)
Q Consensus 526 pDQreKfLQrlQQvqqQg~~~ll------------~~p~-g~ 554 (576)
-|||+||+|..+|- ++|.--.. |||+ ||
T Consensus 487 ~~Qr~rFe~Q~~~k-~~GDDEa~~~De~Fc~ALEYGlPPtgG 527 (560)
T KOG1885|consen 487 VDQRQRFEQQARDK-DAGDDEAQMVDEDFCTALEYGLPPTGG 527 (560)
T ss_pred HHHHHHHHHHHHHh-hcCCcccccccHHHHHHHHcCCCCCCc
Confidence 48999999999996 77754332 9999 54
No 300
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=34.56 E-value=1.5e+02 Score=25.37 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=34.5
Q ss_pred hhhhHHHHHHHHHHhHHhHHHHHHHhhc------CCChhhHHHHHHHHHHHHHHHHHhHHHHH
Q 008136 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYD------TDNANQKEKFEADLKKEIKKLQRYRDQIK 63 (576)
Q Consensus 7 LQ~EIDr~LKKV~EGVe~Fd~iyeKl~~------a~n~nQKEKlE~DLKKEIKKLQRlRDQIK 63 (576)
+..+|.+..+.|.+-|..-+....+... ..-.+|.++|-.+|+..|...|+.+..++
T Consensus 51 ~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~ 113 (117)
T smart00503 51 LIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYR 113 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555443333211 12246888899999988888888776665
No 301
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=34.28 E-value=74 Score=34.21 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhHhhHHHHhhhh
Q 008136 135 LNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 135 L~~~IdeL~~QiE~~EaEiE~L 156 (576)
|..-|++++..|..+|..++.+
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i 163 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEI 163 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 4555666666666666555554
No 302
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=34.25 E-value=4e+02 Score=26.49 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 008136 171 LETSITRHKAHIMKLELILRLL 192 (576)
Q Consensus 171 Le~~ieRhk~HI~kLE~lLRlL 192 (576)
....+++...|..+|+.+.+-+
T Consensus 129 ~~~~~~~l~~H~~kl~~~~ke~ 150 (177)
T PF03234_consen 129 GKAELEELQEHRAKLEKEQKEL 150 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888888887666654
No 303
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=34.12 E-value=1.6e+02 Score=25.39 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=35.3
Q ss_pred HHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHH-HHHHHHHHhhhCCCCChhhhhhhhHHHHHHHHhC
Q 008136 140 SELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHI-MKLELILRLLDNDELSPEQVNDVKDLLEDYVERN 216 (576)
Q Consensus 140 deL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI-~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~n 216 (576)
|+|..+++.+-.+++.|............+++...+..+-.|. .+++.+...+ -+++.++-+.++.||..|
T Consensus 1 e~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~~~~V~e~ 72 (94)
T PF05957_consen 1 EDLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQA------REQAREAAEQTEDYVREN 72 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHC
Confidence 3567777777777777743222222222333333333221111 1222222221 356677888888888765
No 304
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=33.80 E-value=4.8e+02 Score=25.84 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHHh
Q 008136 181 HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 215 (576)
Q Consensus 181 HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~ 215 (576)
....+..+++.+.. ++-+.|.-+|+.|--|...
T Consensus 187 ~~~~~~~~~~~~Q~--lEe~Ri~~lk~~l~~~a~~ 219 (236)
T cd07651 187 WNREWKAALDDFQD--LEEERIQFLKSNCWTFANN 219 (236)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 45555667776665 7788888888888777654
No 305
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.78 E-value=6.7e+02 Score=30.88 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008136 168 LTHLETSITRHKAHIMKLELILRLLD 193 (576)
Q Consensus 168 l~eLe~~ieRhk~HI~kLE~lLRlLd 193 (576)
+..|...+.-|+--|.+|=.=+..|+
T Consensus 857 ls~l~~~~k~~~nli~~ltEk~~sl~ 882 (970)
T KOG0946|consen 857 LSNLQEKIKFGNNLIKELTEKISSLE 882 (970)
T ss_pred HHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence 44455555555566666655555554
No 306
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=33.76 E-value=7e+02 Score=27.70 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCh-hhhhhhh
Q 008136 172 ETSITRHKAHIMKLELILRLLDNDELSP-EQVNDVK 206 (576)
Q Consensus 172 e~~ieRhk~HI~kLE~lLRlLdNd~Ldp-e~V~dIK 206 (576)
...+++..-.|.+||.|.|.|.-++-++ ..+.+++
T Consensus 291 ~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e 326 (391)
T KOG1850|consen 291 DKEYETLQKKIQRLEKLCRALQTERNELNKKLEDLE 326 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 3466778888999999999999888764 3344443
No 307
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.48 E-value=4.3e+02 Score=26.42 Aligned_cols=14 Identities=43% Similarity=0.313 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 008136 84 LVDARKLIEREMER 97 (576)
Q Consensus 84 L~E~RKlIE~~MEr 97 (576)
|...|..-|+.|..
T Consensus 183 l~~~~~~~~~~~~~ 196 (239)
T cd07647 183 LEDARVEWESEHAT 196 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666643
No 308
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=33.28 E-value=6.5e+02 Score=29.33 Aligned_cols=182 Identities=20% Similarity=0.290 Sum_probs=86.8
Q ss_pred hhhHHHHHHHHHHhH--------HhHHHHHHHhhcCCChhh-----HHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhh
Q 008136 8 QGEIDRVLKKVQEGV--------DVFDSIWNKVYDTDNANQ-----KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDK 74 (576)
Q Consensus 8 Q~EIDr~LKKV~EGV--------e~Fd~iyeKl~~a~n~nQ-----KEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK 74 (576)
.+|..+.|-++.-|| +.-+.+|+++..+.--+| +||+- .||...-|+|-+--++|. |
T Consensus 255 e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r-~l~~D~nk~~~~~~~mk~---------K 324 (622)
T COG5185 255 EQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWR-ALKSDSNKYENYVNAMKQ---------K 324 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHH---------H
Confidence 456666665555544 345666666666654444 23332 244444455555444443 2
Q ss_pred hhhhhHHH---HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHH
Q 008136 75 KVSASYEQ---ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEA 151 (576)
Q Consensus 75 ~~~a~~~~---~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~Ea 151 (576)
. ..|.. +|.+.=-+.|++++-.++-+-+.| |+.-|+|+. +.+-+++ +.-=++|-+.++.+..
T Consensus 325 ~--~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~-~q~~kq~Is------~e~fe~m------n~Ere~L~reL~~i~~ 389 (622)
T COG5185 325 S--QEWPGKLEKLKSEIELKEEEIKALQSNIDELH-KQLRKQGIS------TEQFELM------NQEREKLTRELDKINI 389 (622)
T ss_pred H--HhcchHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHhcCCC------HHHHHHH------HHHHHHHHHHHHHhcc
Confidence 2 12222 344444455555555554444443 445555553 3332222 2222344444444444
Q ss_pred Hhhhhh--cccCCC-CCchhHHHHHHHHHHHHHHHHHHHH---HHhhhCCC---CChhhhh----hhhHHHHHHHH
Q 008136 152 ELEGLT--VKKGKT-RPPRLTHLETSITRHKAHIMKLELI---LRLLDNDE---LSPEQVN----DVKDLLEDYVE 214 (576)
Q Consensus 152 EiE~Ls--~KK~Kk-~~~rl~eLe~~ieRhk~HI~kLE~l---LRlLdNd~---Ldpe~V~----dIKEdIeyYVE 214 (576)
+.++|. ++-.+- -+++++.|+..+...+--+.++=.. ++-=-||. +++|+.. +|++.|..+++
T Consensus 390 ~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~ 465 (622)
T COG5185 390 QSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSIL 465 (622)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHH
Confidence 444442 121111 2356777777777766666666444 44434443 3444443 35555655553
No 309
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=33.14 E-value=6.2e+02 Score=26.88 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCC
Q 008136 170 HLETSITRHKAHIMKLELILRLLDND 195 (576)
Q Consensus 170 eLe~~ieRhk~HI~kLE~lLRlLdNd 195 (576)
.+...++..+--+.+||.|.|.|...
T Consensus 283 ~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 283 KLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44556778888999999999999754
No 310
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=33.05 E-value=6.8e+02 Score=27.37 Aligned_cols=125 Identities=14% Similarity=0.325 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHH----hhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHH
Q 008136 9 GEIDRVLKKVQEGVDVFDSIWNK----VYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQAL 84 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iyeK----l~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L 84 (576)
.|++-+++.+++.++.-+..+++ +.+ .......+=..+.+.+..|..+-..+...+..- ..+...+
T Consensus 251 ~El~~V~~el~~~~~~~~~~~~~~~k~l~~--~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~--------~~~~~~~ 320 (412)
T PF04108_consen 251 QELPDVVKELQERLDEMENNEERTKKLLQS--QRDHIRELYNALSEALEELRKFGERLPSYLAAF--------HDFEERW 320 (412)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence 58888899999998888888877 542 122344444555555555554444333332211 1122334
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hc-cccccccccCCCCCCChhHHH-HHHHHHHHHHHHHHHHHhHhhHHHH
Q 008136 85 VDARKLIEREMERFKICEKE-TK-TKAFSKEGLGQQPKTDPKEKA-KSETRDWLNNLVSELESQIDSFEAE 152 (576)
Q Consensus 85 ~E~RKlIE~~MErFK~vEKE-~K-TKafSKEGL~~~~K~DP~Eke-K~E~~~WL~~~IdeL~~QiE~~EaE 152 (576)
.+.+-.|+..|+.++.+-.- .. -.+|.+ |. .|-+ |..+++.+...+..++.+++.+..|
T Consensus 321 ~~~~~~i~~~~~~l~~L~~~Y~~F~~aY~~--LL-------~Ev~RRr~~~~k~~~i~~~~~eeL~~l~ee 382 (412)
T PF04108_consen 321 EEEKESIQAYIDELEQLCEFYEGFLSAYDS--LL-------LEVERRRAVRDKMKKIIREANEELDKLREE 382 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444566555555544211 10 124544 32 2333 4567889999999999998887655
No 311
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=32.89 E-value=1.2e+02 Score=31.64 Aligned_cols=47 Identities=19% Similarity=0.433 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhH
Q 008136 8 QGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYR 59 (576)
Q Consensus 8 Q~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlR 59 (576)
|+.|+.+++-|.|-++.|+..-+.++.. ..+--+.|+++|++|+.+.
T Consensus 1 ~~~l~~l~~pl~e~l~~~~~~l~~~~~~-----~~~~~~~L~~~l~~l~~~~ 47 (304)
T PF02646_consen 1 QEQLEQLLKPLKEQLEKFEKRLEESFEQ-----RSEEFGSLKEQLKQLSEAN 47 (304)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999988755555332 2233477888887777666
No 312
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=32.72 E-value=17 Score=27.56 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.3
Q ss_pred hhhhhhhHHHHHHHHhCCCCcc
Q 008136 200 EQVNDVKDLLEDYVERNQDDFE 221 (576)
Q Consensus 200 e~V~dIKEdIeyYVE~nqdDF~ 221 (576)
+.+++|-|+|+..+|.|.++|+
T Consensus 3 ~~~D~lLDeId~vLe~NAe~FV 24 (33)
T TIGR03687 3 EGVDDLLDEIDGVLESNAEEFV 24 (33)
T ss_pred chHHHHHHHHHHHHHHhHHHHH
Confidence 5789999999999999988775
No 313
>PTZ00332 paraflagellar rod protein; Provisional
Probab=32.72 E-value=8.6e+02 Score=28.43 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=18.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH
Q 008136 165 PPRLTHLETSITRHKAHIMKLELILR 190 (576)
Q Consensus 165 ~~rl~eLe~~ieRhk~HI~kLE~lLR 190 (576)
..|..+.+.++.----|-.+|+.++-
T Consensus 355 ekRr~~yeqFl~~asQHkqrL~~tv~ 380 (589)
T PTZ00332 355 EKRRVEYQQFLEVAGQHKKLLELTVY 380 (589)
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788777778887776554
No 314
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=32.65 E-value=1.6e+02 Score=28.01 Aligned_cols=56 Identities=18% Similarity=0.260 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhh
Q 008136 129 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQV 202 (576)
Q Consensus 129 ~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V 202 (576)
+=..++|.++++.|+.=|+.-+.|. +........+..+|+.+..+|....|+++++
T Consensus 20 e~~~e~Lee~~ekl~~vv~er~ee~------------------~~~~~~~~er~~kl~~~r~~m~~~Gis~~eL 75 (135)
T PRK10947 20 ECTLETLEEMLEKLEVVVNERREEE------------------SAAAAEVEERTRKLQQYREMLIADGIDPNEL 75 (135)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 3344566666666666665544443 2333444456779999999999999999877
No 315
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=32.59 E-value=79 Score=27.76 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCChhhhh-hhhHHHHHHHHhC
Q 008136 177 RHKAHIMKLELILRLLDNDELSPEQVN-DVKDLLEDYVERN 216 (576)
Q Consensus 177 Rhk~HI~kLE~lLRlLdNd~Ldpe~V~-dIKEdIeyYVE~n 216 (576)
....-+..||.|++.|+||.+.-|+.- .+++-++.|-.+.
T Consensus 11 sfE~~l~eLE~IV~~LE~Gel~Le~sl~~~erG~~L~k~c~ 51 (81)
T COG1722 11 SFEEALAELEEIVESLESGELPLEEALKEFERGMALYKECQ 51 (81)
T ss_pred hHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHH
Confidence 344556789999999999999966654 5777777776653
No 316
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=32.43 E-value=74 Score=29.99 Aligned_cols=64 Identities=25% Similarity=0.386 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hh
Q 008136 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS-PE 200 (576)
Q Consensus 130 E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ld-pe 200 (576)
|..-||.+.+- |.+.+..++|.|....-| -++++++..+++|-..|..+=.|+|-++++-|| |.
T Consensus 15 el~P~l~d~~~----~~r~~~n~~e~L~~qedk---~~l~e~e~q~k~~l~~i~e~G~iird~d~glVDFpa 79 (123)
T COG4911 15 ELLPWLRDRLI----QLRKIKNEIELLLVQEDK---YALQEYESQTKKILDEIIEKGIIIRDIDIGLVDFPA 79 (123)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHhcccccH---HHHHHHHHHHHHHHHHHHHcCceeeccccccccchh
Confidence 45566666554 455677788888554332 358888888888888888888899999999998 44
No 317
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=32.41 E-value=2.4e+02 Score=23.25 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=32.1
Q ss_pred cchhhhHHHHHHH------HHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 008136 5 RKLQGEIDRVLKK------VQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWI 66 (576)
Q Consensus 5 RKLQ~EIDr~LKK------V~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWl 66 (576)
+|++.-|+.+-++ |.||.+..-.+|..= ...-.....+..|.---.||+.+|.+|+-..
T Consensus 5 ~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~---~~~~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 5 SKLQSRLERLEKELSIELKVKEGAENLLRLYSDE---KKKKLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555443 455555555544421 1112355666666666677777777776543
No 318
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=32.33 E-value=2e+02 Score=28.35 Aligned_cols=10 Identities=40% Similarity=0.617 Sum_probs=5.0
Q ss_pred HHHhHHHHHh
Q 008136 55 LQRYRDQIKT 64 (576)
Q Consensus 55 LQRlRDQIKt 64 (576)
|.|+||.+..
T Consensus 86 L~rvrde~~~ 95 (189)
T PF10211_consen 86 LLRVRDEYRM 95 (189)
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 319
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=31.75 E-value=1.9e+02 Score=33.96 Aligned_cols=148 Identities=24% Similarity=0.292 Sum_probs=67.3
Q ss_pred cCCChhhHHHHHHHHHH--H----HHHHH-HhHHHHHhhhcccchhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q 008136 34 DTDNANQKEKFEADLKK--E----IKKLQ-RYRDQIKTWIQSSEIKDKKVSASYEQALVDA-RKLIEREMERFKICEKET 105 (576)
Q Consensus 34 ~a~n~nQKEKlE~DLKK--E----IKKLQ-RlRDQIKtWlasneIKDK~~~a~~~~~L~E~-RKlIE~~MErFK~vEKE~ 105 (576)
...|..||+-|-+-+|- + +.++- ++-+-++ |...+.||.-= .-...|.++ ++.+|+.- .=|++-
T Consensus 337 ~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~~~~~g~-~~d~~rika~V---IrG~~l~eal~~~~e~~~----p~e~~~ 408 (652)
T COG2433 337 SVSDDHERDALAAAYKAYLAYKPKLEKVERKLPELGI-WKDVERIKALV---IRGYPLAEALSKVKEEER----PREKEG 408 (652)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hhhHHHHHHHe---ecCCcHHHHHHHHHhhhc----cccccc
Confidence 56678889888887653 2 22222 2233445 88888888322 122234333 23333332 112222
Q ss_pred ccccccccccCCC---CCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhc----ccCCC-----CCchhHHHHH
Q 008136 106 KTKAFSKEGLGQQ---PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKGKT-----RPPRLTHLET 173 (576)
Q Consensus 106 KTKafSKEGL~~~---~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~----KK~Kk-----~~~rl~eLe~ 173 (576)
++--+.-++-..- .++.-.-+.-.+-..=|..-|++|++.|+.++++++++.- +.+|. ...++..|+.
T Consensus 409 ~~~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~ 488 (652)
T COG2433 409 TEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEK 488 (652)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 2112222211100 0001111122233345666677777777777777776631 11121 1234555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 008136 174 SITRHKAHIMKLELIL 189 (576)
Q Consensus 174 ~ieRhk~HI~kLE~lL 189 (576)
.|+.-+--+..||.=|
T Consensus 489 ~L~e~~~~ve~L~~~l 504 (652)
T COG2433 489 ELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555433
No 320
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=31.73 E-value=3.4e+02 Score=30.49 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhHhhHHH
Q 008136 132 RDWLNNLVSELESQIDSFEA 151 (576)
Q Consensus 132 ~~WL~~~IdeL~~QiE~~Ea 151 (576)
..-|.++..+|+...+.++.
T Consensus 279 ~~~l~d~~~~l~~~~~~l~~ 298 (563)
T TIGR00634 279 LTEVEEATRELQNYLDELEF 298 (563)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 33444555555554444443
No 321
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.67 E-value=1.5e+02 Score=35.24 Aligned_cols=93 Identities=19% Similarity=0.255 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCC---------CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGK---------TRPPRLTHLETSITRHKAHIMKLELILRLLDND 195 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~K---------k~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd 195 (576)
.++|.|.++-+-+.+++...+++.+--+.+..+.|.+- .++.|+.+|.+-|.+.=....-||.|.|-|..-
T Consensus 100 l~~~~~~c~~il~q~~~~~~~l~sl~~k~~~vs~kt~~l~eace~l~~eq~kl~elae~I~k~L~yF~~le~l~~~l~~p 179 (733)
T KOG2604|consen 100 LKKRIEECDAILDQTNNALDTLLSLQKKFEFVSQKTSALHEACEQLLEEQSKLSELAEGIRKKLHYFAELEELNRRLNHP 179 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCc
Confidence 55666777766666666666776666666666544332 235688899999988877888999999999886
Q ss_pred CCChh------hhhhhhHHHHHHHHhCCC
Q 008136 196 ELSPE------QVNDVKDLLEDYVERNQD 218 (576)
Q Consensus 196 ~Ldpe------~V~dIKEdIeyYVE~nqd 218 (576)
.+.+. -+..|-|+| .|+|.|-|
T Consensus 180 t~~v~~~sF~~~l~~ld~ci-~~l~en~~ 207 (733)
T KOG2604|consen 180 TLSVGKVSFKEMLAKLDECI-MFLEENPD 207 (733)
T ss_pred chhhhhhhHHHHHHHHHHHH-HHHHhCCc
Confidence 64432 234455555 46766543
No 322
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=31.61 E-value=1.1e+02 Score=25.72 Aligned_cols=20 Identities=45% Similarity=0.556 Sum_probs=17.5
Q ss_pred HHHHHHHhHhhHHHHhhhhh
Q 008136 138 LVSELESQIDSFEAELEGLT 157 (576)
Q Consensus 138 ~IdeL~~QiE~~EaEiE~Ls 157 (576)
.|++|+..|..+++||+.+.
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~ 41 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLE 41 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999988873
No 323
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=31.53 E-value=70 Score=26.90 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhhCCCCChhhhh-hhhHHHHHHHHhCCC
Q 008136 181 HIMKLELILRLLDNDELSPEQVN-DVKDLLEDYVERNQD 218 (576)
Q Consensus 181 HI~kLE~lLRlLdNd~Ldpe~V~-dIKEdIeyYVE~nqd 218 (576)
-+.+||.|++.|+++.|+-|+.- -.++-++.+-.+++-
T Consensus 6 ~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c~~~ 44 (67)
T TIGR01280 6 ALSELEQIVQKLESGDLALEEALNLFERGMALARRCEKK 44 (67)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999966554 467777776666543
No 324
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=31.36 E-value=67 Score=27.84 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhhCCCCChhhhh-hhhHHHHHHHHhCC
Q 008136 181 HIMKLELILRLLDNDELSPEQVN-DVKDLLEDYVERNQ 217 (576)
Q Consensus 181 HI~kLE~lLRlLdNd~Ldpe~V~-dIKEdIeyYVE~nq 217 (576)
-+.+||.|++.|++|.++-|+.- ..++-++.+-.+++
T Consensus 15 a~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~~ 52 (80)
T PRK00977 15 ALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQK 52 (80)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999976654 46666666655543
No 325
>PF03528 Rabaptin: Rabaptin; InterPro: IPR018514 Regeneration of injured axons at neuromuscular junctions has been assumed to be regulated by extra-cellular factors that promote neurite outgrowth. A novel neurite outgrowth factor from chick denervated skeletal muscle has been cloned and characterised. The protein, termed neurocrescin (rabaptin), has been shown to be secreted in an activity-dependent fashion [].Rabaptin is a 100kDa coiled-coil protein that interacts with the GTP form of the small GTPase Rab5, a potent regulator of endocytic transport []. It is mainly cytosolic, but a fraction co-localises with Rab5 to early endosomes. Rab5 recruits rabaptin-5 to purified early endosomes in a GTP-dependent manner, demonstrating functional similarities with other members of the Ras superfamily. Immunodepletion of rabaptin-5 from cytosol strongly inhibits Rab5-dependent early endosome fusion. Thus, rabaptin-5 is a Rab effector required for membrane docking and fusion.; GO: 0005096 GTPase activator activity, 0008083 growth factor activity; PDB: 1X79_C.
Probab=31.24 E-value=2.2e+02 Score=26.44 Aligned_cols=51 Identities=27% Similarity=0.405 Sum_probs=4.7
Q ss_pred cccchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhh--HHHHHHHHHHHHHHHHH
Q 008136 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ--KEKFEADLKKEIKKLQR 57 (576)
Q Consensus 3 a~RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQ--KEKlE~DLKKEIKKLQR 57 (576)
.+|+-|.||-.+.-.|.+++..|+.-|..|+.-.-+.+ +|..+- |++|||+
T Consensus 18 ~~r~~qEEvASLq~i~k~tv~~ye~~~~~LeqEr~Q~~q~~e~~~R----ev~~L~~ 70 (106)
T PF03528_consen 18 VQRQWQEEVASLQAILKETVSEYETQWSLLEQERLQWQQYRESEER----EVAKLQR 70 (106)
T ss_dssp --------------------------------------------HH----HHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcc
Confidence 46888999999999999999999888888654422222 333333 3667763
No 326
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=31.19 E-value=7e+02 Score=26.93 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhCCC-CChhhhhhhh
Q 008136 183 MKLELILRLLDNDE-LSPEQVNDVK 206 (576)
Q Consensus 183 ~kLE~lLRlLdNd~-Ldpe~V~dIK 206 (576)
.+.+.|...|.+|. |+.|++.-|+
T Consensus 265 era~ei~EKfk~GekLt~EelllLq 289 (294)
T COG1340 265 ERAEEIYEKFKRGEKLTTEELLLLQ 289 (294)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 35556666666665 8887776655
No 327
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=31.18 E-value=1.7e+02 Score=27.79 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhh
Q 008136 128 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQV 202 (576)
Q Consensus 128 K~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V 202 (576)
|+=..+||.++++.|+.=|+.-+.|. +........+..+|+.|.+++....|+++++
T Consensus 19 re~~~e~Lee~~ekl~~vv~er~~~~------------------~~~~~~~~er~~~l~~i~~~~~~~Git~eeL 75 (134)
T PRK10328 19 REFSIDVLEEMLEKFRVVTKERREEE------------------EQQQRELAERQEKINTWLELMKADGINPEEL 75 (134)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 33345566666666666665555443 2333445556778999999999999999877
No 328
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=31.15 E-value=2.5e+02 Score=23.82 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 132 RDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 132 ~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
.+=++.+++.|+.|++.+-.|++.+
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~l 52 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDL 52 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3334444555555555555444444
No 329
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.05 E-value=1.8e+02 Score=29.36 Aligned_cols=77 Identities=25% Similarity=0.232 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHH--HHHHHHHHHHHhhhCCCCC-----hhhh
Q 008136 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHK--AHIMKLELILRLLDNDELS-----PEQV 202 (576)
Q Consensus 130 E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk--~HI~kLE~lLRlLdNd~Ld-----pe~V 202 (576)
+++.=+...++.|+.|.+..+-+ ++++|- -.| -..-.+.||.+ ..|.+||.++| +.+.-+ -.++
T Consensus 48 ~Vr~e~er~L~~Lk~ql~~~~l~-----~k~rki-f~r-yrkVRFFErkKaeR~irrLeK~~k--eS~ad~kd~~i~~ql 118 (199)
T KOG4484|consen 48 EVREELERKLQDLKKQLDNHELL-----AKERKI-FKR-YRKVRFFERKKAERSIRRLEKLIK--ESGADVKDKQIQQQL 118 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHH--hhccchhhHHHHHHH
Confidence 34444555666677766655543 222210 000 01112333332 35788999998 333322 3467
Q ss_pred hhhhHHHHHHHHh
Q 008136 203 NDVKDLLEDYVER 215 (576)
Q Consensus 203 ~dIKEdIeyYVE~ 215 (576)
..+|.||+|...=
T Consensus 119 rk~kidL~YVr~f 131 (199)
T KOG4484|consen 119 RKLKIDLEYVRFF 131 (199)
T ss_pred HHHHHHHHHHHhc
Confidence 7899999987743
No 330
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=31.05 E-value=6.9e+02 Score=28.32 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=18.5
Q ss_pred HHHHHHhHHHHHhhhcccchh
Q 008136 52 IKKLQRYRDQIKTWIQSSEIK 72 (576)
Q Consensus 52 IKKLQRlRDQIKtWlasneIK 72 (576)
|..-+++|.|||+|..+.|..
T Consensus 152 ~~e~~~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 152 IQEHWVLVQQLKSASGSGDCQ 172 (504)
T ss_pred HHHHHHHHHHHHHHhcCCchh
Confidence 566789999999999999876
No 331
>PF09210 DUF1957: Domain of unknown function (DUF1957); InterPro: IPR015293 This C-terminal domain is found in a set of hypothetical bacterial proteins that have a N-terminal domain related to the glycoside hydrolase family 57 family GH57 from CAZY. The exact function of this domain has not, as yet, been defined. ; PDB: 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=30.90 E-value=78 Score=28.64 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhh
Q 008136 172 ETSITRHKAHIMKLELILRLLDNDELSPEQVNDVK 206 (576)
Q Consensus 172 e~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIK 206 (576)
+...+|-+.|+.+...|..+|..+.++.+-+..++
T Consensus 54 ~YA~~R~~~Hl~rF~~L~~~l~~~~id~~~L~~~E 88 (102)
T PF09210_consen 54 EYARERFKEHLNRFWRLYDMLESGRIDEEWLEELE 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 66788999999999999999999999966665554
No 332
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=30.86 E-value=1.1e+03 Score=29.77 Aligned_cols=159 Identities=21% Similarity=0.287 Sum_probs=0.0
Q ss_pred ccchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCCh--------hhHHHHHHHHHHHHHHHHHhHHHHHhhhc--------
Q 008136 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNA--------NQKEKFEADLKKEIKKLQRYRDQIKTWIQ-------- 67 (576)
Q Consensus 4 ~RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~--------nQKEKlE~DLKKEIKKLQRlRDQIKtWla-------- 67 (576)
.+.|..+.+++-+++..-...+...++++..+... .+.++.|.-|-+--.||||.-+.-+.-++
T Consensus 478 ~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~ 557 (1041)
T KOG0243|consen 478 KELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDR 557 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred --ccchhhhhhhhhHHHHHHHHHHHHH------------------HHHHHHHHHH----hhhccccccccccCCCCCCCh
Q 008136 68 --SSEIKDKKVSASYEQALVDARKLIE------------------REMERFKICE----KETKTKAFSKEGLGQQPKTDP 123 (576)
Q Consensus 68 --sneIKDK~~~a~~~~~L~E~RKlIE------------------~~MErFK~vE----KE~KTKafSKEGL~~~~K~DP 123 (576)
..+=.+..+.--+...|.++-+.+. ..||.|-..= ..||++-+
T Consensus 558 ~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~~~~s~~s~~~~~~e~~~t~~~------------- 624 (1041)
T KOG0243|consen 558 KDRLDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQLTTMLAQMESFLSAKSKATEIMKTKIS------------- 624 (1041)
T ss_pred hhccccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHhhhhccchhhhhhhhh-------------
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 008136 124 KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 195 (576)
Q Consensus 124 ~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd 195 (576)
..++.+...++.++..++.+..+++. .++....--.-|+..||..+.-..++
T Consensus 625 ------~~r~~~~~~~e~~q~~~~~~k~~~~s--------------~l~~i~s~~~~~~~~~~~~l~~~~~~ 676 (1041)
T KOG0243|consen 625 ------KDRDILSEVLESLQQLQEVLKKDSES--------------CLEVINSSITSSINELESMLETIANT 676 (1041)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHhhhHHH--------------HHHHHhccchhhHHHHHHHHHHHHHH
No 333
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=30.65 E-value=3.5e+02 Score=31.78 Aligned_cols=43 Identities=28% Similarity=0.258 Sum_probs=23.0
Q ss_pred HHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHH
Q 008136 17 KVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQ 61 (576)
Q Consensus 17 KV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQ 61 (576)
++.| .+.+|+--.+++---+.--.+- |..|+-|+|+=+|++.|
T Consensus 249 ~~l~-~d~~d~~~~~~qlP~~evl~~~-e~~l~Ae~kqekRlq~~ 291 (645)
T KOG0681|consen 249 KILE-MDYYDENRNYFQLPYTEVLAEV-ELALTAEKKQEKRLQEQ 291 (645)
T ss_pred HHhh-hhhhhccceEEecccccccchh-hhhccHHHHHHHHHHHH
Confidence 3344 5555554444443322221111 45677777777888888
No 334
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=30.43 E-value=1e+02 Score=28.18 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhc
Q 008136 45 EADLKKEIKKLQRYRDQIKTWIQ 67 (576)
Q Consensus 45 E~DLKKEIKKLQRlRDQIKtWla 67 (576)
..+|..+|..||++++.|..++.
T Consensus 88 ~~~l~~~i~~l~~~~~~l~~~~~ 110 (133)
T cd04787 88 LAETERRIKELLKLRDRMQQAVS 110 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888887765443
No 335
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=30.40 E-value=72 Score=27.54 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhhCCCCChhhh-hhhhHHHHHHHHhCC
Q 008136 180 AHIMKLELILRLLDNDELSPEQV-NDVKDLLEDYVERNQ 217 (576)
Q Consensus 180 ~HI~kLE~lLRlLdNd~Ldpe~V-~dIKEdIeyYVE~nq 217 (576)
--+.+||.|++.|++|.|.-++. .-+++-++.+-.+++
T Consensus 8 eal~~LE~IV~~LE~g~l~Leesl~lyeeG~~L~k~C~~ 46 (75)
T PRK14066 8 TALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCSK 46 (75)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999996654 346666665555543
No 336
>PRK10865 protein disaggregation chaperone; Provisional
Probab=30.26 E-value=1e+03 Score=28.60 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008136 46 ADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETK 106 (576)
Q Consensus 46 ~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~K 106 (576)
..|++.|..|++-.+.++. ..++..+. .|.+.++.|+...++|..++...|
T Consensus 413 ~rLer~l~~L~~E~e~l~~---e~~~~~~~-------~~~~l~~~l~~lq~e~~~L~eq~k 463 (857)
T PRK10865 413 DRLDRRIIQLKLEQQALMK---ESDEASKK-------RLDMLNEELSDKERQYSELEEEWK 463 (857)
T ss_pred HHHHHHHHHHHHHHHHHHh---hhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777666655532 11232223 456666777777777766655554
No 337
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=30.20 E-value=2.3e+02 Score=27.56 Aligned_cols=124 Identities=20% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHhHHHHHhhhccc--chhhhhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHH
Q 008136 55 LQRYRDQIKTWIQSS--EIKDKKVS-----ASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 127 (576)
Q Consensus 55 LQRlRDQIKtWlasn--eIKDK~~~-----a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~Eke 127 (576)
+.|+.+.||..++.- .+.|.... .-+...|.+.|+.+-..|-.-+.+|++.+.-.-.-+-+......-. .+-
T Consensus 3 f~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al-~~g 81 (221)
T PF04012_consen 3 FKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELAL-AAG 81 (221)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008136 128 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (576)
Q Consensus 128 K~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdN 194 (576)
+++...-.-.-+..+..+++.++..++.+ ...++..+-+|.+||.=|+-+.+
T Consensus 82 ~edLAr~al~~k~~~e~~~~~l~~~~~~~---------------~~~~~~l~~~l~~l~~kl~e~k~ 133 (221)
T PF04012_consen 82 REDLAREALQRKADLEEQAERLEQQLDQA---------------EAQVEKLKEQLEELEAKLEELKS 133 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
No 338
>PF13166 AAA_13: AAA domain
Probab=30.18 E-value=8.6e+02 Score=27.62 Aligned_cols=12 Identities=8% Similarity=0.293 Sum_probs=6.2
Q ss_pred hhhhhhHHHHHH
Q 008136 201 QVNDVKDLLEDY 212 (576)
Q Consensus 201 ~V~dIKEdIeyY 212 (576)
-++.|-+.+.+|
T Consensus 460 ~~~~iN~~L~~~ 471 (712)
T PF13166_consen 460 AADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHh
Confidence 344455555555
No 339
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=30.09 E-value=3.6e+02 Score=30.40 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHhhh
Q 008136 129 SETRDWLNNLVSELESQIDSFEAELEG 155 (576)
Q Consensus 129 ~E~~~WL~~~IdeL~~QiE~~EaEiE~ 155 (576)
.+-.+=|-.-+|.|+.-||.+..++-.
T Consensus 216 ~~~Sd~lltkVDDLQD~vE~LRkDV~~ 242 (426)
T smart00806 216 SEDSDSLLTKVDDLQDIIEALRKDVAQ 242 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777788888888888877644
No 340
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=30.05 E-value=1.1e+02 Score=27.16 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhc
Q 008136 45 EADLKKEIKKLQRYRDQIKTWIQ 67 (576)
Q Consensus 45 E~DLKKEIKKLQRlRDQIKtWla 67 (576)
..+|.++|+.|++.++.|+.++.
T Consensus 88 ~~~l~~~i~~l~~~~~~l~~~~~ 110 (123)
T cd04770 88 LAEVEAKIAELQALRAELAGLLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999988887764
No 341
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=29.79 E-value=4.1e+02 Score=23.84 Aligned_cols=61 Identities=11% Similarity=0.286 Sum_probs=45.1
Q ss_pred HHHHHHHHHhHHhHHHHHHHhhcCCChh-hHHHHHHHHHHHHHH-HHHhHHHHHhhhcccchh
Q 008136 12 DRVLKKVQEGVDVFDSIWNKVYDTDNAN-QKEKFEADLKKEIKK-LQRYRDQIKTWIQSSEIK 72 (576)
Q Consensus 12 Dr~LKKV~EGVe~Fd~iyeKl~~a~n~n-QKEKlE~DLKKEIKK-LQRlRDQIKtWlasneIK 72 (576)
.+.+..+.+-++..+..|+.+......+ .-..+-.+|.+.... ++.--+++-.++..+|+.
T Consensus 81 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~al~~~d~~ 143 (171)
T PF02203_consen 81 AELLARAEQNLEQAEQAFDAFKALPHASPEERALADELEASFDAYLQQALDPLLAALRAGDIA 143 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCS---GTGGHHHHHHHHHHHHH-HHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCHH
Confidence 5777788888888888888888877766 555688888888888 766667777888887766
No 342
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=29.75 E-value=1.8e+02 Score=26.03 Aligned_cols=11 Identities=45% Similarity=0.625 Sum_probs=10.0
Q ss_pred HHHHHHHHHHH
Q 008136 46 ADLKKEIKKLQ 56 (576)
Q Consensus 46 ~DLKKEIKKLQ 56 (576)
..|++||+=||
T Consensus 27 ~~L~eEI~~Lr 37 (86)
T PF12711_consen 27 EALKEEIQLLR 37 (86)
T ss_pred HHHHHHHHHHH
Confidence 78999999887
No 343
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=29.70 E-value=1e+02 Score=27.93 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhcc
Q 008136 43 KFEADLKKEIKKLQRYRDQIKTWIQS 68 (576)
Q Consensus 43 KlE~DLKKEIKKLQRlRDQIKtWlas 68 (576)
+...+|..+|..|+++|+.|..|+..
T Consensus 86 ~~~~~l~~~i~~L~~~~~~L~~~~~~ 111 (127)
T TIGR02044 86 EKVAEIERKISELQSMRDQLEALAQA 111 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33568999999999999999988853
No 344
>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.
Probab=29.61 E-value=2.3e+02 Score=27.33 Aligned_cols=65 Identities=26% Similarity=0.352 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccc--chhhhh--hhhhHHHHHHHHHHHHHHH-----------HHHHHHHHhhhcc
Q 008136 43 KFEADLKKEIKKLQRYRDQIKTWIQSS--EIKDKK--VSASYEQALVDARKLIERE-----------MERFKICEKETKT 107 (576)
Q Consensus 43 KlE~DLKKEIKKLQRlRDQIKtWlasn--eIKDK~--~~a~~~~~L~E~RKlIE~~-----------MErFK~vEKE~KT 107 (576)
.+-..+|.||..|-..=.+||.|++-. .|.|-. +.+..+..|.+.++..+.. ++|=|.|.|-.|.
T Consensus 13 ~l~~~vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQeevl~~l~~v~~~a~~~~~~i~~Y~~~Ra~~v~k~~K~ 92 (150)
T PF02252_consen 13 ELLQKVKPEIRELIEKCNTVKMWIQLLIPKIEDGNNFGVSVQEEVLEELRAVESKAENFLDQISKYFSARAKAVSKAAKY 92 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-----SS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 466789999999999999999999876 444333 3466677777777766665 5666666666654
No 345
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=29.60 E-value=9.4e+02 Score=27.89 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhc---ccCCCCCchhHHHHHHHHHHH
Q 008136 126 KAKSETRDWLNNLVSELESQIDSFEAELEGLTV---KKGKTRPPRLTHLETSITRHK 179 (576)
Q Consensus 126 keK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~---KK~Kk~~~rl~eLe~~ieRhk 179 (576)
..|-|+..-...++|-|.+.-|.-|.|.=+|+. |..|.+-+...+|+.++++.-
T Consensus 467 ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLv 523 (527)
T PF15066_consen 467 QLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLV 523 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 345566666678888888888888888877752 333333233344555444443
No 346
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=29.40 E-value=5.8e+02 Score=25.79 Aligned_cols=53 Identities=17% Similarity=0.439 Sum_probs=35.2
Q ss_pred HHHHHHHHhHHHHHhhh-----cccchhh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008136 50 KEIKKLQRYRDQIKTWI-----QSSEIKD--KKVSASYEQALVDARKLIEREMERFKICE 102 (576)
Q Consensus 50 KEIKKLQRlRDQIKtWl-----asneIKD--K~~~a~~~~~L~E~RKlIE~~MErFK~vE 102 (576)
.|.++-+.+-+.|+.|+ .+...+. +..+.-|..+|.|.|.++++.++.=+..|
T Consensus 153 ~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~ 212 (264)
T PF06008_consen 153 DELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAE 212 (264)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666777776 4444432 12236788999999999999887665544
No 347
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=29.35 E-value=8.5e+02 Score=27.30 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=31.3
Q ss_pred HHHHhHHhHHHHHHHhhcCCC-hhhHHHHHHHHHHHHHHHHHhHHHHHhhhc
Q 008136 17 KVQEGVDVFDSIWNKVYDTDN-ANQKEKFEADLKKEIKKLQRYRDQIKTWIQ 67 (576)
Q Consensus 17 KV~EGVe~Fd~iyeKl~~a~n-~nQKEKlE~DLKKEIKKLQRlRDQIKtWla 67 (576)
.+.|-+..|+++...+..... ..--+.+-...+.+|..|++-=..++.+..
T Consensus 224 ~~~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~ 275 (582)
T PF09731_consen 224 EVQELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEEE 275 (582)
T ss_pred hHHHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677778887766655444 344566667777777777754444555443
No 348
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=29.04 E-value=46 Score=37.77 Aligned_cols=41 Identities=34% Similarity=0.707 Sum_probs=29.5
Q ss_pred cccCCCCCCCCCCCCcccccccCchhHHHHHHHHHHHHHhcccccC------------CCCC-CC
Q 008136 503 WRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLL------------GMPL-GG 554 (576)
Q Consensus 503 WRp~s~fqnq~e~gq~rgR~Ei~pDQreKfLQrlQQvqqQg~~~ll------------~~p~-g~ 554 (576)
|-=+++|--=|++ -|||++|.+.+++- ..|.--.. |||+ ||
T Consensus 418 ~EiaNaysELNDP----------~dQ~~RF~~Q~~~k-~~Gddea~~~Dedfv~ALeyGmPPTgG 471 (502)
T COG1190 418 KEIANAYSELNDP----------VDQRERFEAQVEEK-EAGDDEAMELDEDFVEALEYGMPPTGG 471 (502)
T ss_pred EEeeeccchhcCH----------HHHHHHHHHHHHHH-HcCCccccccCHHHHHHHhcCCCCCCC
Confidence 5556667666776 79999999987776 66655222 9999 55
No 349
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=29.02 E-value=6.7e+02 Score=28.60 Aligned_cols=120 Identities=15% Similarity=0.158 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh-hcccC-
Q 008136 84 LVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL-TVKKG- 161 (576)
Q Consensus 84 L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~L-s~KK~- 161 (576)
.......+-..+-+|+++|.-.+.. .| +|++.+...+-..-|.+++.+=...-=.++.++.-| ...+|
T Consensus 374 ~~~~a~~lr~~la~y~e~~~l~~~g----~~------ld~~~~~~l~~~~~i~~fL~Q~~~~~~~~~~q~~~l~a~~~G~ 443 (501)
T TIGR00962 374 MKQVAGSLRLELAQYRELEAFSQFA----SD------LDEATKAQLERGKRLVELLKQPQYKPLPVEEQVVILYAGTKGY 443 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----cc------CCHHHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCC
Confidence 3344445556667788887766553 23 466665544443333332221110012233333333 22333
Q ss_pred -CCCCchhHHHHHHHHHHHHHHH-HHHHHHHhh-hCCCCChhhhhhhhHHHHHHHHh
Q 008136 162 -KTRPPRLTHLETSITRHKAHIM-KLELILRLL-DNDELSPEQVNDVKDLLEDYVER 215 (576)
Q Consensus 162 -Kk~~~rl~eLe~~ieRhk~HI~-kLE~lLRlL-dNd~Ldpe~V~dIKEdIeyYVE~ 215 (576)
+.- .++++..+......|+. +.-.+++.+ ++..|+.+.-+.|++.|..|++.
T Consensus 444 l~~v--~~~~i~~~~~~l~~~l~~~~~~~~~~i~~~~~l~~~~~~~L~~~i~~~~~~ 498 (501)
T TIGR00962 444 LDDI--PVDKVRKFEQELLDYLDANHPDILEEINTKKKLTEELEDKLKEALKNFKKT 498 (501)
T ss_pred cccc--cHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 221 12234444444444442 222333333 45679988788899999999875
No 350
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=28.97 E-value=1e+02 Score=31.46 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-------------hhhC---------CCCChhhhhhhhHHHHH
Q 008136 172 ETSITRHKAHIMKLELILR-------------LLDN---------DELSPEQVNDVKDLLED 211 (576)
Q Consensus 172 e~~ieRhk~HI~kLE~lLR-------------lLdN---------d~Ldpe~V~dIKEdIey 211 (576)
+..|.+---|+.+||.++- .|.+ ..++-|+|+.|-||...
T Consensus 69 E~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~e 130 (209)
T KOG2910|consen 69 EELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQE 130 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHH
Confidence 4456666667777766543 3333 34677777776555443
No 351
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=28.91 E-value=1.1e+03 Score=28.41 Aligned_cols=179 Identities=19% Similarity=0.229 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHh------hcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchh-hhhhhhhH--
Q 008136 10 EIDRVLKKVQEGVDVFDSIWNKV------YDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIK-DKKVSASY-- 80 (576)
Q Consensus 10 EIDr~LKKV~EGVe~Fd~iyeKl------~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIK-DK~~~a~~-- 80 (576)
++++-.-+..+....|++++..+ +..-...|+.|++--++.|+-- ++.+++.|.-.-=-+ +|.+..-.
T Consensus 354 ~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~---l~q~l~~~~k~e~~e~~k~~~d~~~r 430 (698)
T KOG0978|consen 354 EKDRESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETES---LLQRLKALDKEERSEIRKQALDDAER 430 (698)
T ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 45555566667777888777642 2444556666666444444332 223333333211000 11100000
Q ss_pred -HHHHHHHHHHHHHHHHHHH--HHHhhhccccccccccCCC---------CCCChh-----H--------HHHHHHHHHH
Q 008136 81 -EQALVDARKLIEREMERFK--ICEKETKTKAFSKEGLGQQ---------PKTDPK-----E--------KAKSETRDWL 135 (576)
Q Consensus 81 -~~~L~E~RKlIE~~MErFK--~vEKE~KTKafSKEGL~~~---------~K~DP~-----E--------keK~E~~~WL 135 (576)
...+.+.-+-|...++-|| -.|-++.--||.. ...+ .+.|-. + +.-.+...=|
T Consensus 431 ~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed--~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l 508 (698)
T KOG0978|consen 431 QIRQVEELSEELQKKEKNFKCLLSEMETIGSAFED--MQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKL 508 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0134444445556677777 3344444445554 1100 011100 0 1112333445
Q ss_pred HHHHHHHHHhHhhHHHHhhhhhcccCC------CCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008136 136 NNLVSELESQIDSFEAELEGLTVKKGK------TRPPRLTHLETSITRHKAHIMKLELILRLLD 193 (576)
Q Consensus 136 ~~~IdeL~~QiE~~EaEiE~Ls~KK~K------k~~~rl~eLe~~ieRhk~HI~kLE~lLRlLd 193 (576)
...|-+|..+++.++..+-.|..+-.. +....+..+...++-|++|+..+..-++-|.
T Consensus 509 ~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq 572 (698)
T KOG0978|consen 509 EEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQ 572 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666665554221111 1123355667778888888887776666654
No 352
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=28.85 E-value=3.3e+02 Score=25.52 Aligned_cols=61 Identities=28% Similarity=0.469 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHH
Q 008136 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLE 210 (576)
Q Consensus 131 ~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIe 210 (576)
-.+|.-.-|.+|+++++.++++++. ++...-+++.-++..|+ .+++.+...|.
T Consensus 4 ~a~~al~ki~~l~~~~~~i~~~~~~--------------~I~~i~~~~~~~~~~l~-------------~~i~~l~~~l~ 56 (149)
T PF07352_consen 4 EADWALRKIAELQREIARIEAEAND--------------EIARIKEWYEAEIAPLQ-------------NRIEYLEGLLQ 56 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCHHHH-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH
Confidence 4567788899999999999998744 44444555555555553 56677888899
Q ss_pred HHHHhCCC
Q 008136 211 DYVERNQD 218 (576)
Q Consensus 211 yYVE~nqd 218 (576)
.|.+.|-+
T Consensus 57 ~y~e~~r~ 64 (149)
T PF07352_consen 57 AYAEANRD 64 (149)
T ss_dssp HHHHCTHH
T ss_pred HHHHHCHH
Confidence 99988866
No 353
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=28.83 E-value=6e+02 Score=27.53 Aligned_cols=30 Identities=23% Similarity=0.425 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHhhh
Q 008136 126 KAKSETRDWLNNLVSELESQIDSFEAELEG 155 (576)
Q Consensus 126 keK~E~~~WL~~~IdeL~~QiE~~EaEiE~ 155 (576)
.-|+--..||.-.+.....|||.+|.|+-.
T Consensus 91 q~Ke~qv~~lEgQl~s~Kkqie~Leqelkr 120 (307)
T PF10481_consen 91 QVKESQVNFLEGQLNSCKKQIEKLEQELKR 120 (307)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555433
No 354
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.79 E-value=3.4e+02 Score=30.02 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008136 83 ALVDARKLIEREMERFKI 100 (576)
Q Consensus 83 ~L~E~RKlIE~~MErFK~ 100 (576)
....-|...|++||+.-+
T Consensus 215 ~~eklR~r~eeeme~~~a 232 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQA 232 (365)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344568888899988743
No 355
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=28.77 E-value=1.1e+03 Score=28.51 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=19.9
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHH
Q 008136 159 KKGKTRPPRLTHLETSITRHKAHIMKL 185 (576)
Q Consensus 159 KK~Kk~~~rl~eLe~~ieRhk~HI~kL 185 (576)
.++|....++.+.+.++.||..-|.|.
T Consensus 352 erkK~e~ke~ea~E~rkkr~~aei~Kf 378 (811)
T KOG4364|consen 352 ERKKLESKEVEAQELRKKRHEAEIGKF 378 (811)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 344455557788888888988888876
No 356
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=28.76 E-value=1.4e+02 Score=26.30 Aligned_cols=24 Identities=46% Similarity=0.549 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhh
Q 008136 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKK 75 (576)
Q Consensus 42 EKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~ 75 (576)
+..+..+|+=|++|..| |||||-.
T Consensus 32 ~~~~~~v~~hI~lLheY----------NeiKD~g 55 (83)
T PF07061_consen 32 EDPEKIVKRHIKLLHEY----------NEIKDIG 55 (83)
T ss_pred cCHHHHHHHHHHHHHHH----------hHHHHHH
Confidence 46778899999999987 7888866
No 357
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=28.71 E-value=9.1e+02 Score=29.91 Aligned_cols=12 Identities=33% Similarity=0.612 Sum_probs=7.8
Q ss_pred hhhHHHHHHHHH
Q 008136 8 QGEIDRVLKKVQ 19 (576)
Q Consensus 8 Q~EIDr~LKKV~ 19 (576)
-.+||.+.|||.
T Consensus 874 ~~~id~lv~~IK 885 (1259)
T KOG0163|consen 874 YRQIDDLVKKIK 885 (1259)
T ss_pred HHHHHHHHHHhc
Confidence 346777777765
No 358
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=28.57 E-value=2.7e+02 Score=24.64 Aligned_cols=48 Identities=21% Similarity=0.363 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHH----HhHHHHHhhhcccch
Q 008136 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ----RYRDQIKTWIQSSEI 71 (576)
Q Consensus 11 IDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQ----RlRDQIKtWlasneI 71 (576)
=+++.+.|.+--+.++.+|+++..- |.|.+||. =|.+.|.+.++++.|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~V-------------k~E~~kL~~EN~~Lq~YI~nLm~~s~v 69 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEV-------------KEENEKLESENEYLQQYIGNLMSSSSV 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3488899999999999999999643 44444553 244556666665544
No 359
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=28.50 E-value=1.3e+02 Score=30.14 Aligned_cols=67 Identities=22% Similarity=0.439 Sum_probs=42.4
Q ss_pred hHHHHHHH---HHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccC
Q 008136 40 QKEKFEAD---LKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLG 116 (576)
Q Consensus 40 QKEKlE~D---LKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~ 116 (576)
||..++.+ |++||.-|+.+.+++...+.+ +...+..++++++.....+++
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~---------------q~~el~~L~~qi~~~~~~~~~------------ 102 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVAS---------------QEQELASLEQQIEQIEETRQE------------ 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH------------
Confidence 34555544 467777777777777665543 444455666777777666543
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHhHh
Q 008136 117 QQPKTDPKEKAKSETRDWLNNLVSELESQID 147 (576)
Q Consensus 117 ~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE 147 (576)
+.-+|..+|+.|+..|+
T Consensus 103 --------------l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 103 --------------LVPLMEQMIDELEQFVE 119 (251)
T ss_pred --------------HHHHHHHHHHHHHHHHh
Confidence 34477888888877766
No 360
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=28.34 E-value=1.3e+02 Score=33.30 Aligned_cols=64 Identities=30% Similarity=0.387 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhHhhHHHHhhhhhcccCCC---CCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 008136 133 DWLNNLVSELESQIDSFEAELEGLTVKKGKT---RPPRLTHLETSITRHKAHIMKLELILRLLDNDELS 198 (576)
Q Consensus 133 ~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk---~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ld 198 (576)
.-|++=+++|+.|++.++..++.+.. +.. -..+++.+...+...+.++..|+.+|+-|......
T Consensus 166 ~L~~~Rl~~L~~qi~~~~~~l~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 232 (475)
T PF10359_consen 166 ELIQERLDELEEQIEKHEEKLGELEL--NPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSESS 232 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 35678889999999999999888744 111 12456677777888888888888888877765433
No 361
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=28.10 E-value=2.8e+02 Score=27.39 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 128 KSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 128 K~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
+.+-..+|...|+.++++|+....+++.+
T Consensus 68 ~~~r~~~l~~~i~~~~~~i~~~r~~l~~~ 96 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRIEQKRERLEEL 96 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777777777766666665
No 362
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=28.10 E-value=7e+02 Score=29.78 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008136 80 YEQALVDARKLIEREMERFKIC 101 (576)
Q Consensus 80 ~~~~L~E~RKlIE~~MErFK~v 101 (576)
+.+.|.+.|+.++.-+..+|..
T Consensus 575 a~~~l~~a~~~~~~~i~~lk~~ 596 (782)
T PRK00409 575 AQQAIKEAKKEADEIIKELRQL 596 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666666666666666543
No 363
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=28.03 E-value=9.7e+02 Score=27.56 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=14.3
Q ss_pred HHHHHHhHhhHHHHhhhhhc
Q 008136 139 VSELESQIDSFEAELEGLTV 158 (576)
Q Consensus 139 IdeL~~QiE~~EaEiE~Ls~ 158 (576)
+..|=+.+|++|+|...|..
T Consensus 203 vN~LwKrmdkLe~ekr~Lq~ 222 (552)
T KOG2129|consen 203 VNSLWKRMDKLEQEKRYLQK 222 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888777743
No 364
>PRK11638 lipopolysaccharide biosynthesis protein WzzE; Provisional
Probab=27.96 E-value=2e+02 Score=30.87 Aligned_cols=69 Identities=12% Similarity=0.224 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhH-hhHHHHhhhh-hcccCCCCCchhHHH-HHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 008136 129 SETRDWLNNLVSELESQI-DSFEAELEGL-TVKKGKTRPPRLTHL-ETSITRHKAHIMKLELILRLLDNDELS 198 (576)
Q Consensus 129 ~E~~~WL~~~IdeL~~Qi-E~~EaEiE~L-s~KK~Kk~~~rl~eL-e~~ieRhk~HI~kLE~lLRlLdNd~Ld 198 (576)
.++.+||+..|+-.+.++ ..+-.++..- ..|+ ..-.+++.-. +..-.++.-||.+|+.-|+-=+.-.|.
T Consensus 163 ~~A~~lL~~YI~fv~~~~~~~l~~~i~~~~~~~~-~~l~~~~~~~~~~ak~~~~~~i~rl~~AL~IA~aagI~ 234 (342)
T PRK11638 163 PDANNLLRQYVAFASQRAASHLNDELKGAWAART-IQMKAQVKRQEAVAKAIYDREVNSVEQALKIAEQQGIS 234 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 678889999999999986 3333333222 1111 1111222222 245567888999999988875544444
No 365
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=27.92 E-value=1.1e+03 Score=28.27 Aligned_cols=136 Identities=17% Similarity=0.138 Sum_probs=62.8
Q ss_pred HHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHH----HHHHHHhhhccccccccccCCCCCCChhHHH
Q 008136 52 IKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREME----RFKICEKETKTKAFSKEGLGQQPKTDPKEKA 127 (576)
Q Consensus 52 IKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~ME----rFK~vEKE~KTKafSKEGL~~~~K~DP~Eke 127 (576)
-++++.+++||.+--++.+ .+...=+.+|.+|- .+--++++.++..-+.|-+..- -.+
T Consensus 502 ~~ek~~l~~~i~~l~~~~~------------~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~------~~e 563 (698)
T KOG0978|consen 502 REEKSKLEEQILTLKASVD------------KLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKK------AQE 563 (698)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHH------HHH
Confidence 3456777888877665544 44444455565553 2334455555555555444211 111
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhH
Q 008136 128 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKD 207 (576)
Q Consensus 128 K~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKE 207 (576)
-..-.+||.--.+..+.+++.++..+..+. ..++.+.....|...-+.+|-..|+-+.++..-+.-...+.+
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~--------~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~E 635 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELE--------LELEIEKFKRKRLEEELERLKRKLERLKKEESGASADEVLAE 635 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHH
Confidence 122345565555555555555555443331 011111122222222334444455555665553333334445
Q ss_pred HHHHHH
Q 008136 208 LLEDYV 213 (576)
Q Consensus 208 dIeyYV 213 (576)
.|..|-
T Consensus 636 Elk~yK 641 (698)
T KOG0978|consen 636 ELKEYK 641 (698)
T ss_pred HHHHHH
Confidence 555554
No 366
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=27.91 E-value=3.4e+02 Score=29.76 Aligned_cols=84 Identities=19% Similarity=0.416 Sum_probs=0.0
Q ss_pred HhHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008136 23 DVFDSIWNKVYDTDNANQKEKFEADLKKEIKK-LQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKIC 101 (576)
Q Consensus 23 e~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKK-LQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~v 101 (576)
+..+.+..++.......++++-..+.|.++.+ +-++|+.|..+ ...+..+.
T Consensus 507 ~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~--~~~~~~~~-------------------------- 558 (602)
T PF00012_consen 507 EEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED--KDFVSEEE-------------------------- 558 (602)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--GGGSTHHH--------------------------
T ss_pred ccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh--hccCCHHH--------------------------
Q ss_pred HhhhccccccccccCCCCCCChhHHHHHHHHHHHHHH-----HHHHHHhHhhHHHHhhhh
Q 008136 102 EKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNL-----VSELESQIDSFEAELEGL 156 (576)
Q Consensus 102 EKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~-----IdeL~~QiE~~EaEiE~L 156 (576)
+.+.-.++.+||.+. +++++..++.++..++.+
T Consensus 559 ----------------------~~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i 596 (602)
T PF00012_consen 559 ----------------------KKKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPI 596 (602)
T ss_dssp ----------------------HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH
No 367
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=27.75 E-value=5e+02 Score=24.12 Aligned_cols=40 Identities=18% Similarity=0.424 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHH
Q 008136 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ 56 (576)
Q Consensus 11 IDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQ 56 (576)
+|.+++++..|+..-+++-+=+ .+|-.+|.+-=|.+.||-
T Consensus 2 ~~~l~~~~~~g~~~~~e~~~f~------keRa~iE~eYak~L~kLa 41 (191)
T cd07610 2 FELLEKRTELGLDLLKDLREFL------KKRAAIEEEYAKNLQKLA 41 (191)
T ss_pred chHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 4788999999999999887766 347778888777777763
No 368
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=27.61 E-value=3.5e+02 Score=22.22 Aligned_cols=56 Identities=21% Similarity=0.290 Sum_probs=34.9
Q ss_pred HHHHHHHHhHhhHHHHhhhhhcccCC------CCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008136 137 NLVSELESQIDSFEAELEGLTVKKGK------TRPPRLTHLETSITRHKAHIMKLELILRLL 192 (576)
Q Consensus 137 ~~IdeL~~QiE~~EaEiE~Ls~KK~K------k~~~rl~eLe~~ieRhk~HI~kLE~lLRlL 192 (576)
.-|.-|+++++.++.+++.+..+-.- ...+=++.-...++...-++.+|+..|..|
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34667888888888888888544332 123335555666666666677766666544
No 369
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=27.57 E-value=40 Score=26.20 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=22.4
Q ss_pred cccccccCchhHHHHHHHHHHHHHhcccccCCCCC
Q 008136 518 FRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPL 552 (576)
Q Consensus 518 ~rgR~Ei~pDQreKfLQrlQQvqqQg~~~ll~~p~ 552 (576)
++|| +++||+++++.+.+. ....+|+|.
T Consensus 9 ~~Gr---s~eqk~~l~~~it~~----l~~~~~~p~ 36 (61)
T PRK02220 9 IEGR---TEEQLKALVKDVTAA----VSKNTGAPA 36 (61)
T ss_pred cCCC---CHHHHHHHHHHHHHH----HHHHhCcCh
Confidence 3466 689999999999998 566777775
No 370
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=27.56 E-value=1.2e+02 Score=27.80 Aligned_cols=47 Identities=26% Similarity=0.326 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHH
Q 008136 129 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSIT 176 (576)
Q Consensus 129 ~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ie 176 (576)
.....-|.+.+.+|..+++....+++.-..|++++ ..|+++|+..+.
T Consensus 71 l~i~t~L~~v~~~l~~~~~~~~rQl~aE~~k~~~~-~~r~~~l~~~i~ 117 (118)
T PF08514_consen 71 LKIMTSLCDVAKSLSEELEKTQRQLEAEKKKKRKN-KSRLEELEQKIK 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHhc
Confidence 45566677777778888877777776553333333 348888887653
No 371
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.47 E-value=4.3e+02 Score=26.79 Aligned_cols=93 Identities=23% Similarity=0.335 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhcccchh-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCC
Q 008136 43 KFEADLKKEIKKLQRYRDQIKTWIQSSEIK-DKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKT 121 (576)
Q Consensus 43 KlE~DLKKEIKKLQRlRDQIKtWlasneIK-DK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~ 121 (576)
=||--++.=-|---|+|+|+|.-...+-+- | +..+|.-+-..|-..||-|.-. | +-||--.-..+.+-
T Consensus 99 yLE~smqaF~~qQs~lreq~~~~~~~~~~~~~------~~~p~~~~eeq~rrn~~mf~~a---M--~~f~pf~~~pa~~~ 167 (193)
T COG5394 99 YLEHSMQAFSDQQSRLREQMKKAFGGNPLGPN------MATPLQMWEEQIRRNMEMFQQA---M--QMFSPFAKAPAPKE 167 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc------ccchHHHHHHHHHHhHHHHHHH---H--HhcCcccCCCCccc
Confidence 345555555555569999999999988664 3 1126665666666667666432 2 33444433333332
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhh
Q 008136 122 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEG 155 (576)
Q Consensus 122 DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~ 155 (576)
.|++. .+-|++|..|+..+...+++
T Consensus 168 ~~~~~---------~~d~~~lk~ql~a~Q~kldk 192 (193)
T COG5394 168 APKPM---------SDDLDELKGQLRAMQPKLDK 192 (193)
T ss_pred cCccc---------hhHHHHHHHHHHHhhhhhcc
Confidence 33222 33467777777766555443
No 372
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=27.41 E-value=6.1e+02 Score=27.57 Aligned_cols=57 Identities=21% Similarity=0.284 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008136 128 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 192 (576)
Q Consensus 128 K~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlL 192 (576)
-.|+..-|+.+|..+..++++..+.++... .....|...|+|.|..++++-.=|..|
T Consensus 103 l~e~Ekvlk~aIq~i~~~~q~~~~~Lnnva--------sdea~L~~Kierrk~ElEr~rkRle~L 159 (338)
T KOG3647|consen 103 LLEVEKVLKSAIQAIQVRLQSSRAQLNNVA--------SDEAALGSKIERRKAELERTRKRLEAL 159 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888999999888888888776652 123355555555555544443333333
No 373
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=27.21 E-value=2.9e+02 Score=25.15 Aligned_cols=36 Identities=14% Similarity=0.350 Sum_probs=20.2
Q ss_pred HHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008136 56 QRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERF 98 (576)
Q Consensus 56 QRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErF 98 (576)
.++..+||.++..+.-. ....++..++.+|..++++
T Consensus 25 ~~~~~~~k~~~~~~~~~-------~A~~~lk~~k~~~k~~~~~ 60 (171)
T PF03357_consen 25 KKLEKKAKKAIKKGNKE-------RAKIYLKRKKRLEKQLEKL 60 (171)
T ss_dssp HHCHHHHHHHHCTT-HH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChH-------HHHHHHHHHHHHHHHHHHH
Confidence 34567778877776622 1224555566666666555
No 374
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=27.08 E-value=3.5e+02 Score=30.42 Aligned_cols=24 Identities=13% Similarity=0.353 Sum_probs=17.5
Q ss_pred HHHHHHHHHhHHHHHhhhcccchh
Q 008136 49 KKEIKKLQRYRDQIKTWIQSSEIK 72 (576)
Q Consensus 49 KKEIKKLQRlRDQIKtWlasneIK 72 (576)
..|.++|+.+=++...|+..+|.+
T Consensus 550 ~~e~~~l~~~l~~~~~wL~~~d~~ 573 (595)
T TIGR02350 550 AEEKEKIEKAVAELKEALKGEDVE 573 (595)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHH
Confidence 445567777778888999887544
No 375
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=26.82 E-value=2.8e+02 Score=26.03 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHhhhh----hcccCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008136 129 SETRDWLNNLVSELESQIDSFEAELEGL----TVKKGKTRPPRLTHLETSITRHKAHIMKLELIL 189 (576)
Q Consensus 129 ~E~~~WL~~~IdeL~~QiE~~EaEiE~L----s~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lL 189 (576)
+|+..|+.+++.+++.+-..+|..+..- -.+-.=.+...++++...+++.+-.+.+||.=+
T Consensus 42 eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 42 EEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677788888888887666666553221 111121233446778888888888888877543
No 376
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=26.79 E-value=2.2e+02 Score=23.77 Aligned_cols=48 Identities=15% Similarity=0.350 Sum_probs=25.1
Q ss_pred HHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008136 139 VSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (576)
Q Consensus 139 IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdN 194 (576)
|++|+..+..++..++.+. ...+++...+++.+.-|.+|=.|..++.|
T Consensus 2 i~elEn~~~~~~~~i~tvk--------~en~~i~~~ve~i~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 2 IDELENELPRIESSINTVK--------KENEEISESVEKIEENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455555555555554441 12445555566666666666555555554
No 377
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=26.77 E-value=3.3e+02 Score=21.64 Aligned_cols=77 Identities=22% Similarity=0.393 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhh
Q 008136 126 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDV 205 (576)
Q Consensus 126 keK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dI 205 (576)
..-.++..||..+...|.. .+. -.+++.+.... .+...++.-|..|+-++..|...-..|.+.. +.....|
T Consensus 8 ~~~~~l~~Wl~~~e~~l~~-~~~-~~~~~~~~~~~-----~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~--~~~~~~i 78 (105)
T PF00435_consen 8 QEADELLDWLQETEAKLSS-SEP-GSDLEELEEQL-----KKHKELQEEIESRQERLESLNEQAQQLIDSG--PEDSDEI 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHCS-CTH-SSSHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCC-CCCHHHHHHHH-----HHHhhhhhHHHHHHHHHHHHHHHHHHHHHcC--CCcHHHH
Confidence 3445677777777777611 111 22222221000 1345667777777777777766666664332 5555555
Q ss_pred hHHHHH
Q 008136 206 KDLLED 211 (576)
Q Consensus 206 KEdIey 211 (576)
++.++.
T Consensus 79 ~~~~~~ 84 (105)
T PF00435_consen 79 QEKLEE 84 (105)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 378
>PRK04406 hypothetical protein; Provisional
Probab=26.72 E-value=2.1e+02 Score=24.66 Aligned_cols=25 Identities=12% Similarity=0.361 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Q 008136 168 LTHLETSITRHKAHIMKLELILRLL 192 (576)
Q Consensus 168 l~eLe~~ieRhk~HI~kLE~lLRlL 192 (576)
|++|...+-+..-.|.+|+.-|++|
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666666655
No 379
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.66 E-value=8.5e+02 Score=29.31 Aligned_cols=90 Identities=22% Similarity=0.211 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHhH-hhHHHHhhhhhcccCCCC---------CchhH-HHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 008136 128 KSETRDWLNNLVSELESQI-DSFEAELEGLTVKKGKTR---------PPRLT-HLETSITRHKAHIMKLELILRLLDNDE 196 (576)
Q Consensus 128 K~E~~~WL~~~IdeL~~Qi-E~~EaEiE~Ls~KK~Kk~---------~~rl~-eLe~~ieRhk~HI~kLE~lLRlLdNd~ 196 (576)
+.++..|+-+.+++|..|+ -.+..|.|-.+.-+.|+. .+|+. ++...+.|.+.-+...=.||+-+--
T Consensus 308 r~~ve~~~~qt~~~~~~q~~k~ld~e~e~n~n~e~~~~a~~~~~~~s~~rvs~dlk~~v~~q~~~~~~ilgil~~il~-- 385 (717)
T KOG3726|consen 308 RIEVEKNFGQTYNELIEQIKKALDIEFEYNSNDEGKPNAVDLTTANSRERVSKDLKEIVNRQIRIFNIILGILRYILM-- 385 (717)
T ss_pred ccccchhhccccchHHHHHHHhhccceeeeccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3467789999999998664 566666666554444432 24555 6666666665555555555554321
Q ss_pred CChhhhh-hhhHHHHHHHHhCCC-Ccc
Q 008136 197 LSPEQVN-DVKDLLEDYVERNQD-DFE 221 (576)
Q Consensus 197 Ldpe~V~-dIKEdIeyYVE~nqd-DF~ 221 (576)
+-=+- -+.+.+-||..-|.| +|+
T Consensus 386 --~~fll~~~~~Sl~ym~~Y~~d~~Fd 410 (717)
T KOG3726|consen 386 --CLFLLWPFIYSLRYMYKYNNDDDFD 410 (717)
T ss_pred --HHHHHHHHHHHHHHHHHhccccccc
Confidence 33333 567888888776655 554
No 380
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=26.66 E-value=2.3e+02 Score=32.35 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=22.6
Q ss_pred HHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008136 51 EIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERF 98 (576)
Q Consensus 51 EIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErF 98 (576)
+-++++..=++.+.|+..+|. . .+.+.++.++..|..|
T Consensus 558 ~~~~~~~~l~~~~~~l~~~d~---~-------~~~~~~~~l~~~~~~~ 595 (616)
T PRK05183 558 ERAAIDAAMAALREVAQGDDA---D-------AIEAAIKALDKATQEF 595 (616)
T ss_pred HHHHHHHHHHHHHHHHhcCCH---H-------HHHHHHHHHHHHHHHH
Confidence 345666666778889987643 3 4444555555544333
No 381
>PF14182 YgaB: YgaB-like protein
Probab=26.59 E-value=3.1e+02 Score=24.52 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHH
Q 008136 83 ALVDARKLIEREMER 97 (576)
Q Consensus 83 ~L~E~RKlIE~~MEr 97 (576)
.|.+-++..|.++|.
T Consensus 55 ~Lk~Iq~~Fe~QTee 69 (79)
T PF14182_consen 55 ELKEIQRVFEKQTEE 69 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677888888877764
No 382
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=26.51 E-value=8.5e+02 Score=26.39 Aligned_cols=18 Identities=6% Similarity=0.211 Sum_probs=7.0
Q ss_pred HHHHHHhHhhHHHHhhhh
Q 008136 139 VSELESQIDSFEAELEGL 156 (576)
Q Consensus 139 IdeL~~QiE~~EaEiE~L 156 (576)
++..+.+++.+...++.+
T Consensus 329 L~~~~~~L~~l~~rL~~l 346 (438)
T PRK00286 329 LRLAKQRLERLSQRLQQQ 346 (438)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 333333444444443333
No 383
>PRK07737 fliD flagellar capping protein; Validated
Probab=26.50 E-value=9.7e+02 Score=27.03 Aligned_cols=27 Identities=19% Similarity=0.508 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHhHHhHHHHHHHhhc
Q 008136 8 QGEIDRVLKKVQEGVDVFDSIWNKVYD 34 (576)
Q Consensus 8 Q~EIDr~LKKV~EGVe~Fd~iyeKl~~ 34 (576)
..+.+.+.++|.+=|+.|+.+.+.+..
T Consensus 267 ~~D~~~~~~~i~~FV~aYN~l~~~i~~ 293 (501)
T PRK07737 267 ATDVDGIFNKIKDFVDKYNELIDKINA 293 (501)
T ss_pred ecChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999888764
No 384
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=26.43 E-value=1.3e+02 Score=24.94 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=17.9
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008136 68 SSEIKDKKVSASYEQALVDARKLIEREMERFK 99 (576)
Q Consensus 68 sneIKDK~~~a~~~~~L~E~RKlIE~~MErFK 99 (576)
+.+.|++. .=...||.|=..||+|+
T Consensus 31 s~~LK~~G-------Ip~r~RryiL~~~ek~r 55 (57)
T PF09597_consen 31 SKQLKELG-------IPVRQRRYILRWREKYR 55 (57)
T ss_pred HHHHHHCC-------CCHHHHHHHHHHHHHHh
Confidence 33566666 34457899999999996
No 385
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=26.41 E-value=1.3e+03 Score=28.65 Aligned_cols=52 Identities=15% Similarity=0.293 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHH-----HHHHHHHHHHhHHH
Q 008136 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEAD-----LKKEIKKLQRYRDQ 61 (576)
Q Consensus 10 EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~D-----LKKEIKKLQRlRDQ 61 (576)
.+++..-.-+.-++.|..-.+-++-.-+.+||++-|+- |+-|.--|-+.|.|
T Consensus 348 ~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q 404 (980)
T KOG0980|consen 348 QLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQ 404 (980)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556667778888877777777777777766654 44444444444444
No 386
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=26.31 E-value=2.2e+02 Score=27.33 Aligned_cols=38 Identities=26% Similarity=0.538 Sum_probs=23.8
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHh
Q 008136 112 KEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAEL 153 (576)
Q Consensus 112 KEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEi 153 (576)
.+|+..+.+..++|.-| -.+.||++-+.-+ .|.+|.|+
T Consensus 70 sqg~EyQt~epseEPik-~~r~WLkenLhvf---lEkLE~Ev 107 (135)
T PF15466_consen 70 SQGFEYQTKEPSEEPIK-AIRNWLKENLHVF---LEKLEKEV 107 (135)
T ss_pred ccccccccCCCccchHH-HHHHHHHHHHHHH---HHHHHHHH
Confidence 36777776655555555 4899999865544 44555553
No 387
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=26.30 E-value=3.8e+02 Score=25.45 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhh
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls 157 (576)
++-|.++..-|...|..|+.++++||.+.-++-
T Consensus 15 e~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~ 47 (131)
T PF11068_consen 15 EKWKEELLQELQEQIQQLDQELQQLEFQGKRMI 47 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777777777777766653
No 388
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=26.30 E-value=7.5e+02 Score=27.21 Aligned_cols=8 Identities=38% Similarity=0.505 Sum_probs=4.3
Q ss_pred hHHHHHHH
Q 008136 206 KDLLEDYV 213 (576)
Q Consensus 206 KEdIeyYV 213 (576)
.+-+.+|.
T Consensus 144 ~~L~~mY~ 151 (367)
T PRK00578 144 SMLLRMYL 151 (367)
T ss_pred HHHHHHHH
Confidence 45555555
No 389
>PRK11820 hypothetical protein; Provisional
Probab=26.01 E-value=8.1e+02 Score=25.95 Aligned_cols=110 Identities=15% Similarity=0.280 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCC
Q 008136 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKT 121 (576)
Q Consensus 42 EKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~ 121 (576)
+.|..||..-+.+|..+-++|+.-.. ..+..+|..+..+|..+- . ..
T Consensus 151 ~~L~~dl~~rl~~i~~~~~~i~~~~p--------------~~~~~~~~rL~~rl~el~--~-----------------~~ 197 (288)
T PRK11820 151 AALKADLLQRLDAIEALVAKIEALAP--------------EILEEYRERLRERLEELL--G-----------------EL 197 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhch--------------HHHHHHHHHHHHHHHHHH--h-----------------hc
Confidence 46777888888888877777765443 378889999999998772 0 12
Q ss_pred ChhHHHHHHHHHH-----HHHHHHHHHHhHhhHHHHhhhhhcccCCC-------------------CC----chhHHHHH
Q 008136 122 DPKEKAKSETRDW-----LNNLVSELESQIDSFEAELEGLTVKKGKT-------------------RP----PRLTHLET 173 (576)
Q Consensus 122 DP~EkeK~E~~~W-----L~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk-------------------~~----~rl~eLe~ 173 (576)
|+. .--.|+.=| +++=|.-|+..+++|+.-++.-. --||+ .. .-.-+++.
T Consensus 198 d~~-Rl~qEval~adK~DI~EEi~RL~sHl~~f~~~L~~~~-~vGrkLDFL~QEm~RE~NTigSKs~~~~is~~vVe~K~ 275 (288)
T PRK11820 198 DEN-RLEQEVALLAQKADIAEELDRLKSHLKEFREILKKGG-PVGRKLDFLMQELNREANTLGSKSNDAEITNLVVELKV 275 (288)
T ss_pred CHH-HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhcCC-CCCcchhHHHHHHhHHHHHHHHccCcHHHHHHHHHHHH
Confidence 442 222233322 35557788888888888876632 11222 11 12456677
Q ss_pred HHHHHHHHHHHHH
Q 008136 174 SITRHKAHIMKLE 186 (576)
Q Consensus 174 ~ieRhk~HI~kLE 186 (576)
.||+-|.+|.++|
T Consensus 276 elEkiREQVQNIE 288 (288)
T PRK11820 276 LIEQMREQVQNIE 288 (288)
T ss_pred HHHHHHHHHhcCC
Confidence 7777777777765
No 390
>COG5606 Uncharacterized conserved small protein [Function unknown]
Probab=25.99 E-value=77 Score=28.80 Aligned_cols=45 Identities=24% Similarity=0.522 Sum_probs=31.8
Q ss_pred hHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhh
Q 008136 21 GVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKK 75 (576)
Q Consensus 21 GVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~ 75 (576)
+.+.|+++|+-++++.. ---+++=-+.+=.+|+.|+.-+-.|-+.
T Consensus 2 ~~~vF~s~~~~~~D~~e----------~a~~m~ir~~l~~~i~~~i~q~~l~Q~q 46 (91)
T COG5606 2 SNEVFTSVWDAIEDTPE----------AAENMKIRSALMMAIKQWIEQAALSQAQ 46 (91)
T ss_pred CCchhhhHHHHHhccHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999872 1223444467778899998877666444
No 391
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=25.95 E-value=3e+02 Score=29.68 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=13.8
Q ss_pred cchhhhHHHHHHHHHHhHHhHHHH
Q 008136 5 RKLQGEIDRVLKKVQEGVDVFDSI 28 (576)
Q Consensus 5 RKLQ~EIDr~LKKV~EGVe~Fd~i 28 (576)
+|+..|..+.-.+++|=++..+.+
T Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~ 222 (471)
T PF04791_consen 199 AKLEDEAAEAKEKLDDIIEKLRRL 222 (471)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHH
Confidence 455666666555555555555554
No 392
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=25.88 E-value=5.6e+02 Score=26.18 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=35.3
Q ss_pred HHHhhhh-hcccCCCCCchhHHHHH--HHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHHh
Q 008136 150 EAELEGL-TVKKGKTRPPRLTHLET--SITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 215 (576)
Q Consensus 150 EaEiE~L-s~KK~Kk~~~rl~eLe~--~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~ 215 (576)
++-+|+- +..|+| ++..+.+.+. ..+|..|+...|+.++.+=. |..-.--+|-+.|--|+..
T Consensus 124 ~~aleK~l~l~~~k-k~~~~~ea~~~l~~~R~~F~~~~ldYv~~i~~---vq~kKkfefle~ll~~~~A 188 (207)
T cd07634 124 YSILEKHLNLSAKK-KESHLQRADTQIDREHQNFYEASLEYVFKIQE---VQEKKKFEFVEPLLAFLQG 188 (207)
T ss_pred HHHHHHHHhccccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3444442 333333 3333444444 55688899999999986532 4444455666666666655
No 393
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=25.83 E-value=6.6e+02 Score=24.85 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 008136 82 QALVDARKLIEREMERFKICEKETKTKAFSKEGL 115 (576)
Q Consensus 82 ~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL 115 (576)
..+.+.=|.||.+|+.| +++|..+=+
T Consensus 61 ~~~s~~~r~i~~~~~~~--------~~~~~~~li 86 (219)
T PF08397_consen 61 MQISEVHRRIENELEEV--------FKAFHSELI 86 (219)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 34566677788877776 456665544
No 394
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=25.70 E-value=1e+03 Score=27.06 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=29.5
Q ss_pred hHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHh
Q 008136 24 VFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKT 64 (576)
Q Consensus 24 ~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKt 64 (576)
.|+--.--+..-=|-.-|+|.|+..+||-..+-+..+.+|.
T Consensus 214 Ey~rkm~aL~~~c~lE~r~k~e~~~qre~a~~~eaeel~k~ 254 (429)
T PF12297_consen 214 EYDRKMVALTAECNLETRKKMEAQHQREMAEMEEAEELLKH 254 (429)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44443333433345556999999999999999999998886
No 395
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=25.69 E-value=5.5e+02 Score=23.87 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=12.4
Q ss_pred hhhhhhhhHHHHHHHHhC
Q 008136 199 PEQVNDVKDLLEDYVERN 216 (576)
Q Consensus 199 pe~V~dIKEdIeyYVE~n 216 (576)
.+.+.-+++-+.+|++..
T Consensus 158 e~r~~~~~~~l~~~~~~~ 175 (191)
T cd07610 158 EERLEILKDNLKNYINAI 175 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566677777777777554
No 396
>PRK03830 small acid-soluble spore protein Tlp; Provisional
Probab=25.53 E-value=2.8e+02 Score=24.42 Aligned_cols=51 Identities=20% Similarity=0.403 Sum_probs=31.3
Q ss_pred cchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHH
Q 008136 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62 (576)
Q Consensus 5 RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQI 62 (576)
-|||.=|..|+.-+.|.-+... ...+..+|+.++.-=++--.-|.-||.-|
T Consensus 12 EkLQ~mi~nTieNi~eAee~l~-------~~~~~~~~~~i~eKN~RR~esi~~~R~EI 62 (73)
T PRK03830 12 EKLQEMIQNTIENIEEAEETIA-------EEDSEKEKQAIEEKNERREESIDGMRSEI 62 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HhCCHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4888888888888877765544 44455666666654444444444444433
No 397
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.44 E-value=1.1e+02 Score=27.82 Aligned_cols=36 Identities=19% Similarity=0.114 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhCCCCChhhhh-hhhHHHHHHHHhC
Q 008136 181 HIMKLELILRLLDNDELSPEQVN-DVKDLLEDYVERN 216 (576)
Q Consensus 181 HI~kLE~lLRlLdNd~Ldpe~V~-dIKEdIeyYVE~n 216 (576)
-+.+||.|++.|++|.|.-|+.- -+++-++.+-.++
T Consensus 13 al~~LEeIV~~LEsgdl~LEesl~lyeeGv~L~k~C~ 49 (95)
T PRK14069 13 ALRELEQIAEKLERQDFSLEESLKAYERGMELKKICS 49 (95)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999966544 4666666655553
No 398
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.35 E-value=1.5e+02 Score=33.69 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 131 TRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 131 ~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
+..--+...++|++|++.++.|++.+
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~ 95 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVL 95 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445678889999999998887755
No 399
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=25.25 E-value=6.5e+02 Score=26.35 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHhhhhh
Q 008136 128 KSETRDWLNNLVSELESQIDSFEAELEGLT 157 (576)
Q Consensus 128 K~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls 157 (576)
..++.+||..-+++++.+++..|..+....
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr 197 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQ 197 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888877663
No 400
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=25.22 E-value=4e+02 Score=22.12 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 127 AKSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 127 eK~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
.......+|...|..+..+++.++.+++.+
T Consensus 49 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 78 (123)
T PF02050_consen 49 NYQRYISALEQAIQQQQQELERLEQEVEQA 78 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888899999999999999998876
No 401
>PF12889 DUF3829: Protein of unknown function (DUF3829); InterPro: IPR024291 This is a small family of proteins from several bacterial species, whose function is not known. It may, however, be related to the GvpL_GvpF family of proteins (PF06386 from PFAM).; PDB: 3RH3_B 3IEE_A.
Probab=25.12 E-value=3.4e+02 Score=26.73 Aligned_cols=114 Identities=17% Similarity=0.211 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchh
Q 008136 89 KLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRL 168 (576)
Q Consensus 89 KlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl 168 (576)
..++.-|..|.+++.--+.|.|=+.+.... |+ ...=|...+++...-.+.|...++.+..+..+.. +
T Consensus 83 ~~l~~l~~~~~e~~~Yy~~k~Y~~D~~ak~---------ke-lh~~l~~~~~~~~~a~~~~~~~l~~~~~~~~~~~---l 149 (276)
T PF12889_consen 83 PALKELYPLINELDSYYDSKDYKDDNFAKA---------KE-LHAKLLAAYEEFKAAYDAFDAALEKINDERRKEQ---L 149 (276)
T ss_dssp HHHHHHHHHHHHHHHH-----HHTT-HHHH---------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcCchhHHH---------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---H
Confidence 344455667777777778888877766432 22 2223344455555555555555555532221111 1
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHhhhCCCCChhhhhhhh---HHHHHHHHh
Q 008136 169 THLETSITRHKAHIMK----LELILRLLDNDELSPEQVNDVK---DLLEDYVER 215 (576)
Q Consensus 169 ~eLe~~ieRhk~HI~k----LE~lLRlLdNd~Ldpe~V~dIK---EdIeyYVE~ 215 (576)
+.++.--....||..+ .+.|+.+|..+.+....+.+++ ..++..++.
T Consensus 150 ~~lk~~g~~~~y~~~~~~~~a~~i~~~l~~~~~~~~d~~~~~~~l~~~~~~~~~ 203 (276)
T PF12889_consen 150 EALKKEGKMIIYYMLKLMIDAEQIIDELQSDDNQKFDMAALDAALAELEKLLKD 203 (276)
T ss_dssp --TTTTTHHHHHHHHHHHHHHHHHHHHHT-TTS--HHHHHHH--HHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 1222222223333333 3566666755554444444444 444444433
No 402
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=25.11 E-value=9.1e+02 Score=26.26 Aligned_cols=19 Identities=16% Similarity=0.462 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 008136 41 KEKFEADLKKEIKKLQRYR 59 (576)
Q Consensus 41 KEKlE~DLKKEIKKLQRlR 59 (576)
-++++.+|.+-=++|+.||
T Consensus 170 l~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 170 IKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 403
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.08 E-value=5.6e+02 Score=23.82 Aligned_cols=19 Identities=16% Similarity=0.441 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhHHHHHh
Q 008136 46 ADLKKEIKKLQRYRDQIKT 64 (576)
Q Consensus 46 ~DLKKEIKKLQRlRDQIKt 64 (576)
..|..-++++-+.=+.+..
T Consensus 60 ~~l~~~~~~~~~~~~~~~~ 78 (218)
T cd07596 60 GELGEALSKLGKAAEELSS 78 (218)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4677777777655555443
No 404
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=25.08 E-value=7e+02 Score=24.94 Aligned_cols=52 Identities=19% Similarity=0.425 Sum_probs=30.7
Q ss_pred HHHHHHHHHh---HHhHHHHHHHhhcCCChhhHHHHHHHHH----HHHHHHHHhHHHHHh
Q 008136 12 DRVLKKVQEG---VDVFDSIWNKVYDTDNANQKEKFEADLK----KEIKKLQRYRDQIKT 64 (576)
Q Consensus 12 Dr~LKKV~EG---Ve~Fd~iyeKl~~a~n~nQKEKlE~DLK----KEIKKLQRlRDQIKt 64 (576)
+.+|+-|.|| +..|+++=++|..+. +.=.-+|-+-++ .+|+-..+.|++.|.
T Consensus 18 e~vl~~i~eg~tql~afe~~g~~L~rt~-aac~fRwNs~vrk~Yee~I~~AKK~Rke~kr 76 (170)
T PRK13923 18 EVVLRHIREGGTQLKAFEEVGDALKRTA-AACGFRWNSVVRKQYQEQIKLAKKERKELRR 76 (170)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHhhHHHhh
Confidence 4567888888 678888877775432 222333333333 455666666776664
No 405
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=25.03 E-value=1.4e+02 Score=34.10 Aligned_cols=127 Identities=20% Similarity=0.254 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCC-CCC
Q 008136 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQ-QPK 120 (576)
Q Consensus 42 EKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~-~~K 120 (576)
++|-.|+-+- |+--+||-.-.|.... --+|- .|.+.|++.+.+.|-.+++ | .|.. +.+
T Consensus 156 ~~~a~d~~~s--~~~q~~d~~e~~~~kd-SQlkv-------rlqe~~~ll~~Rve~le~~---------S--al~~lq~~ 214 (554)
T KOG4677|consen 156 KSYAPDLGRS--KGEQYRDYSEDWSPKD-SQLKV-------RLQEVRRLLKGRVESLERF---------S--ALRSLQDK 214 (554)
T ss_pred hhcccccccc--hhhhHhhHhhhcccch-hhHHH-------HHHHHHHHHHhhhHHHHHH---------H--HHHHHHHH
Confidence 4555555433 3337899999998873 34555 8999999999998887444 3 2221 112
Q ss_pred CCh-hHHHHHHHHHHHHHHHHHHHHhH---hhHHHHhhhhhcccCCC--CCchhHHHHHHHHHHHHHHHHHHHHH
Q 008136 121 TDP-KEKAKSETRDWLNNLVSELESQI---DSFEAELEGLTVKKGKT--RPPRLTHLETSITRHKAHIMKLELIL 189 (576)
Q Consensus 121 ~DP-~EkeK~E~~~WL~~~IdeL~~Qi---E~~EaEiE~Ls~KK~Kk--~~~rl~eLe~~ieRhk~HI~kLE~lL 189 (576)
+-. +++.+.+-..++..|..-+.+=+ +.+.+++|.+...+.+= ...++++++..++..+|--.|=|+++
T Consensus 215 L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~ 289 (554)
T KOG4677|consen 215 LQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELAL 289 (554)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 211 12334444444444444333322 34555666665443331 12356677766666665555544443
No 406
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=24.96 E-value=3.9e+02 Score=28.32 Aligned_cols=83 Identities=22% Similarity=0.418 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChh------hh
Q 008136 129 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPE------QV 202 (576)
Q Consensus 129 ~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe------~V 202 (576)
.++..=|...|..+..+++..+..++.+. ..-..|+..|+|.+..+.+.+.=|..|.+ |-|- .+
T Consensus 161 ~~iE~~l~~ai~~~~~~~~~~~~~l~~l~--------~de~~Le~KIekkk~ELER~qKRL~sLq~--vRPAfmdEyEkl 230 (267)
T PF10234_consen 161 NEIEKALKEAIKAVQQQLQQTQQQLNNLA--------SDEANLEAKIEKKKQELERNQKRLQSLQS--VRPAFMDEYEKL 230 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHH
Confidence 44555677777777777777777777662 12346788888888888888888888887 5442 33
Q ss_pred h-hhhHHHHHHHHhCCC-Ccc
Q 008136 203 N-DVKDLLEDYVERNQD-DFE 221 (576)
Q Consensus 203 ~-dIKEdIeyYVE~nqd-DF~ 221 (576)
+ +++.--+-||+..-+ ||-
T Consensus 231 E~EL~~lY~~Y~~kfRNl~yL 251 (267)
T PF10234_consen 231 EEELQKLYEIYVEKFRNLDYL 251 (267)
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 3 355666778877665 553
No 407
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=24.94 E-value=2.9e+02 Score=25.83 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHH
Q 008136 173 TSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 214 (576)
Q Consensus 173 ~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE 214 (576)
..-..++.--.|.+.+|-+|-- -.|+|++++.||...-+
T Consensus 72 ~L~~el~~l~~ry~t~LellGE---K~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 72 ELEQELEELQQRYQTLLELLGE---KSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHH
Confidence 3344455555666777777743 35888888888876544
No 408
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=24.89 E-value=2.2e+02 Score=29.06 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcc
Q 008136 80 YEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVK 159 (576)
Q Consensus 80 ~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~K 159 (576)
+...|.+.|+-+...|.++|.+|++-..=.=..+-+-.....-. .+-.++....+-.-+-.|..+++.+++++..+
T Consensus 36 ~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al-~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~--- 111 (225)
T COG1842 36 MESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELAL-QAGNEDLAREALEEKQSLEDLAKALEAELQQA--- 111 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008136 160 KGKTRPPRLTHLETSITRHKAHIMKLELILRLLD 193 (576)
Q Consensus 160 K~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLd 193 (576)
...++.|+..+.+..--|..|+.-+.+|.
T Consensus 112 -----~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 112 -----EEQVEKLKKQLAALEQKIAELRAKKEALK 140 (225)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 409
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=24.84 E-value=3e+02 Score=30.04 Aligned_cols=53 Identities=28% Similarity=0.346 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChh
Q 008136 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPE 200 (576)
Q Consensus 130 E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe 200 (576)
+..--|+.-|++|++++-.++.|++. .-.+.+|-.+|-.+|--+|+...||.+
T Consensus 175 D~v~LLqkk~~~l~~~l~~~~~eL~~------------------~~k~L~faqekn~LlqslLddaniD~~ 227 (323)
T PF08537_consen 175 DRVILLQKKIDELEERLNDLEKELEI------------------TKKDLKFAQEKNALLQSLLDDANIDSE 227 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhhhcccHH
Confidence 34445566666666666666666544 455666777777677777887777763
No 410
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.72 E-value=1.4e+03 Score=28.33 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 132 RDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 132 ~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
..++++-|-+|...+-.+++..++-
T Consensus 864 ~k~~~nli~~ltEk~~sl~~qadse 888 (970)
T KOG0946|consen 864 IKFGNNLIKELTEKISSLEAQADSE 888 (970)
T ss_pred hhhhhhHHHHHhhhhhhHHHhhcch
Confidence 5678888999988888888776554
No 411
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=24.71 E-value=1e+03 Score=28.43 Aligned_cols=34 Identities=29% Similarity=0.537 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHH-------------HHhHHHHHhhhcccchhhhh
Q 008136 42 EKFEADLKKEIKKL-------------QRYRDQIKTWIQSSEIKDKK 75 (576)
Q Consensus 42 EKlE~DLKKEIKKL-------------QRlRDQIKtWlasneIKDK~ 75 (576)
..|..=+||||-|- -|+=|-++.|+...+|||..
T Consensus 477 ~eY~e~i~~Evq~A~l~s~~e~~~~Lf~rYvd~a~a~i~~~k~rDp~ 523 (644)
T PRK15455 477 PRYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPD 523 (644)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccCeecCCc
Confidence 33444556888554 57788899999999999887
No 412
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=24.65 E-value=3.8e+02 Score=23.12 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=26.6
Q ss_pred hhhhHHHHHHHHHHhHHhHHHHHHHhhcCCC
Q 008136 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN 37 (576)
Q Consensus 7 LQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n 37 (576)
=|.||..+|-++.+--+-||.-..-+....-
T Consensus 5 dqaeirl~~arLrqeH~D~DaaInAmi~~~c 35 (67)
T COG5481 5 DQAEIRLTLARLRQEHADFDAAINAMIATGC 35 (67)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHhCC
Confidence 3789999999999999999998888876543
No 413
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=24.63 E-value=6.1e+02 Score=27.82 Aligned_cols=108 Identities=17% Similarity=0.247 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhccc
Q 008136 81 EQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKK 160 (576)
Q Consensus 81 ~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK 160 (576)
+..+.++.+.|+.++-+|++++|..=++-=.+ .|... .....-|..+-.+|-.=.|.
T Consensus 213 r~~~~~~~~~L~~~a~QfRaIQrrlL~r~kd~---------~p~~l--~~L~~LLe~ty~~l~~~~d~------------ 269 (377)
T PF14728_consen 213 RQELKELEEELDERAQQFRAIQRRLLTRFKDK---------NPAPL--DNLDTLLEGTYRQLIALADE------------ 269 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------CCcch--hHHHHHHHHHHHHHHHHHHH------------
Confidence 34677788888899999999998763221000 11111 11111222233222222222
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-C-CCCChhhhhhhhHHHHHHHHhCCC
Q 008136 161 GKTRPPRLTHLETSITRHKAHIMKLELILRLLD-N-DELSPEQVNDVKDLLEDYVERNQD 218 (576)
Q Consensus 161 ~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLd-N-d~Ldpe~V~dIKEdIeyYVE~nqd 218 (576)
+++++..+.+....+..+=.||-+|- . -.++.++++-|+.-+-.-|.+..|
T Consensus 270 -------~~~~~~~l~~a~~~L~~~~~Ll~~L~~l~~~l~~~~~~~l~s~~~~~v~d~~e 322 (377)
T PF14728_consen 270 -------IEELQANLKRAGASLSCATQLLILLLKLRFNLNEDDVELLESVFSPSVQDSTE 322 (377)
T ss_pred -------HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCcCCc
Confidence 33445666666666666544444443 1 347888888877665555544333
No 414
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=24.57 E-value=1.6e+02 Score=28.31 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=34.5
Q ss_pred HHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHhhhccccccccccC
Q 008136 52 IKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREM-------ERFKICEKETKTKAFSKEGLG 116 (576)
Q Consensus 52 IKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~M-------ErFK~vEKE~KTKafSKEGL~ 116 (576)
..||.|++...+.++...+-++ ++..|.++.+.|+.-. ++-+.+|+.++ ..|+|-|+-
T Consensus 22 ~~kl~kl~r~Y~~lm~g~~~~~------lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~kvgvv 86 (151)
T PF14584_consen 22 NIKLRKLKRRYDALMRGKDGKN------LEDLLNELFDQIDELKEELEELEKRIEELEEKLR-NCVQKVGVV 86 (151)
T ss_pred HHHHHHHHHHHHHHhCCCCccc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccceEEEE
Confidence 4578888888888888877662 3334444444444433 34444444444 667777764
No 415
>PF09074 Mer2: Mer2; InterPro: IPR015159 Meiotic recombination 2 protein (Mer2) also known as Rec107, forms part of a complex that is required for meiotic double strand DNA break formation. Mer2 increases in abundance and is phosphorylated during the prophase phase of cell division []. MER2 is not required for mitosis and mitotic DNA repair mechanisms and is a component of the MER2-MEI4-REC114 complex which seems to be required for meiotic double-strand break (DSB) formation []. ; GO: 0007131 reciprocal meiotic recombination, 0000794 condensed nuclear chromosome
Probab=24.56 E-value=5.4e+02 Score=26.19 Aligned_cols=25 Identities=8% Similarity=0.240 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhH
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSF 149 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~ 149 (576)
..+-....+++.+++-..+.|+|.+
T Consensus 144 q~~~~ks~~~tq~~l~N~~~QLe~~ 168 (190)
T PF09074_consen 144 QQKIMKSFDCTQEMLFNVSCQLEDM 168 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567788888888888888877
No 416
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=24.32 E-value=3e+02 Score=32.62 Aligned_cols=14 Identities=43% Similarity=0.484 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhhC
Q 008136 181 HIMKLELILRLLDN 194 (576)
Q Consensus 181 HI~kLE~lLRlLdN 194 (576)
|-+-||+|+|-|.|
T Consensus 499 NReMLelLirHLvn 512 (812)
T KOG1451|consen 499 NREMLELLIRHLVN 512 (812)
T ss_pred hHHHHHHHHHHHHH
Confidence 44556777777654
No 417
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=24.30 E-value=1.2e+02 Score=26.56 Aligned_cols=49 Identities=24% Similarity=0.536 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhhhccc-chhhhhhhhhHHHHHHHHHHHHHH
Q 008136 40 QKEKFEADLKKEIKKLQRYRDQIKTWIQSS-EIKDKKVSASYEQALVDARKLIER 93 (576)
Q Consensus 40 QKEKlE~DLKKEIKKLQRlRDQIKtWlasn-eIKDK~~~a~~~~~L~E~RKlIE~ 93 (576)
|++.||..+.-.|--+|.+|..|...-..- -+| ..|+.-+...|+-+|.
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK-----~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK-----QQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHh
Confidence 788888888888888888888877664332 233 4677777777777765
No 418
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=24.25 E-value=8.7e+02 Score=27.83 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhh-cccCCCCCch
Q 008136 89 KLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT-VKKGKTRPPR 167 (576)
Q Consensus 89 KlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls-~KK~Kk~~~r 167 (576)
..+-..+-+|+++|.-...-+| +||+.++..+-..-|.+++.+=.-+--.++..+..|. ..+|-=+.-.
T Consensus 380 ~~lr~~la~y~e~e~~~~~G~~----------ld~~~~~~i~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~g~~~~~~ 449 (502)
T PRK13343 380 GRLRLDYAQFLELEAFTRFGGL----------LDAGTQKQITRGRRLRELLKQPRFSPLSVEEQIALLYALNEGLLDAVP 449 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh----------cCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCccCCC
Confidence 3444556677777754443333 4665554444433333333221111112333333332 1223222222
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHhhh-CCCCChhhhhhhhHHHHHHHHh
Q 008136 168 LTHLETSITRHKAHIM-KLELILRLLD-NDELSPEQVNDVKDLLEDYVER 215 (576)
Q Consensus 168 l~eLe~~ieRhk~HI~-kLE~lLRlLd-Nd~Ldpe~V~dIKEdIeyYVE~ 215 (576)
++++..+......|+. +...++..++ .+.|+.+....|++.|+.|++.
T Consensus 450 ~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~ 499 (502)
T PRK13343 450 LANIQAFEERLLEKLDARFAALSLALESPRELDEAWLAALEEILREAGER 499 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 3344444444444443 2334444454 4568888888899999998865
No 419
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=24.04 E-value=4.1e+02 Score=26.97 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 008136 166 PRLTHLETSITRHKAHIMKLELILRLLDND 195 (576)
Q Consensus 166 ~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd 195 (576)
.++-.++..+-+.+..+.-+..++..|...
T Consensus 175 ~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~ 204 (318)
T TIGR00383 175 DEILSLRTELLALRRSLWPLRDVLNFLLRK 204 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 467778887877777777776666665443
No 420
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=23.99 E-value=3.6e+02 Score=32.24 Aligned_cols=90 Identities=18% Similarity=0.159 Sum_probs=51.7
Q ss_pred cchhhhHHHHHH-HHHHhHHhHHHHHHHhhcCCC-----hhhHHHHHHHHHHHHHHH---------------HHhHHHHH
Q 008136 5 RKLQGEIDRVLK-KVQEGVDVFDSIWNKVYDTDN-----ANQKEKFEADLKKEIKKL---------------QRYRDQIK 63 (576)
Q Consensus 5 RKLQ~EIDr~LK-KV~EGVe~Fd~iyeKl~~a~n-----~nQKEKlE~DLKKEIKKL---------------QRlRDQIK 63 (576)
|+-+.+|+.+-+ ||.|-+..=-.+..|+.++.. ..|++--++|.++-..+| +++|--+-
T Consensus 205 R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~~lk~a~e 284 (861)
T KOG1899|consen 205 RLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDNTLKNALE 284 (861)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH
Confidence 444445554443 345544444444455554432 345555566666555554 45666667
Q ss_pred hhhcccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 008136 64 TWIQSSEIKDKKVSASYEQALVDARKLIEREM 95 (576)
Q Consensus 64 tWlasneIKDK~~~a~~~~~L~E~RKlIE~~M 95 (576)
+.+..|+-||.. .+++.+-|..|+|.-+..|
T Consensus 285 slm~ane~kdr~-ie~lr~~ln~y~k~~~iv~ 315 (861)
T KOG1899|consen 285 SLMRANEQKDRF-IESLRNYLNNYDKNAQIVR 315 (861)
T ss_pred HHHhhchhhhhH-HHHHHHHhhhhhhhhhhhh
Confidence 777777777777 6666666666666555544
No 421
>PTZ00234 variable surface protein Vir12; Provisional
Probab=23.98 E-value=3.7e+02 Score=30.14 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=22.1
Q ss_pred HHHHHHHHHHH--HHHHHHHHHhhhC-CCCC----hhhhhhhhHHHHHHHH
Q 008136 171 LETSITRHKAH--IMKLELILRLLDN-DELS----PEQVNDVKDLLEDYVE 214 (576)
Q Consensus 171 Le~~ieRhk~H--I~kLE~lLRlLdN-d~Ld----pe~V~dIKEdIeyYVE 214 (576)
+..|.+|-..| ..+-+.|...+.+ ..-. .+=|..|++--++|.+
T Consensus 142 ldewKkrK~LYDYfkNYd~Ik~~i~~~~~~kC~kY~~Yl~~I~~LYkkyk~ 192 (433)
T PTZ00234 142 LDEWKKRKLSYIYMKNYNDIKSKVFSQKKEKCDKYTKYLDNINKLYINYKT 192 (433)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhcccCCccccHHHHHHHHHHHHHHHHHhh
Confidence 33444443333 4566666655522 1111 2445667766677766
No 422
>PRK13411 molecular chaperone DnaK; Provisional
Probab=23.83 E-value=4.6e+02 Score=30.23 Aligned_cols=20 Identities=5% Similarity=0.139 Sum_probs=13.7
Q ss_pred HHHHHHHhHHHHHhhhcccc
Q 008136 51 EIKKLQRYRDQIKTWIQSSE 70 (576)
Q Consensus 51 EIKKLQRlRDQIKtWlasne 70 (576)
|-++++..-++++.|+..++
T Consensus 556 er~~i~~~l~~~~~wL~~~~ 575 (653)
T PRK13411 556 LKQRAEQKVEQLEAALTDPN 575 (653)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 34566666777888887754
No 423
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.82 E-value=1.3e+02 Score=25.94 Aligned_cols=35 Identities=26% Similarity=0.119 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhCCCCChhhhh-hhhHHHHHHHHh
Q 008136 181 HIMKLELILRLLDNDELSPEQVN-DVKDLLEDYVER 215 (576)
Q Consensus 181 HI~kLE~lLRlLdNd~Ldpe~V~-dIKEdIeyYVE~ 215 (576)
-+.+||.|++.|++|.|.-++.- .+++-++.+=.+
T Consensus 11 ~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~c 46 (75)
T PRK14064 11 AIAELETIVEALENGSASLEDSLDMYQKGIELTKLC 46 (75)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999966543 355555544444
No 424
>PLN03223 Polycystin cation channel protein; Provisional
Probab=23.75 E-value=6.4e+02 Score=32.80 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=31.2
Q ss_pred HHHHHHHHHH------------HhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHH-----HHHH----HHHHHHHhhh
Q 008136 47 DLKKEIKKLQ------------RYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLI-----EREM----ERFKICEKET 105 (576)
Q Consensus 47 DLKKEIKKLQ------------RlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlI-----E~~M----ErFK~vEKE~ 105 (576)
=+++..|++- |+|+|++.|-.-++=++. ++.-+.|-||+. |-.| |-|+.|=+|+
T Consensus 1442 fm~~rfrslL~g~~~~~~i~~~~~~~~lr~w~ge~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~~l~~v~~~c~~~~ 1516 (1634)
T PLN03223 1442 MLRDKWRSMFKGWFYKNHIPEARVRRQLRIWKGENPDEEE-----EEAFREEKEKVFTYLNKELDEAGLKRVLRRCVIET 1516 (1634)
T ss_pred HHHHHHHHHHhhhcccccCCcHHHHHHHHHhcCCCCCccc-----chhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 3556666665 889999999887754421 223455555554 2233 3456665554
No 425
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.73 E-value=1e+02 Score=27.19 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhc
Q 008136 43 KFEADLKKEIKKLQRYRDQIKTWIQ 67 (576)
Q Consensus 43 KlE~DLKKEIKKLQRlRDQIKtWla 67 (576)
....+|.++|++||+.++.|+.++.
T Consensus 82 ~~~~~l~~~i~~l~~~~~~l~~~l~ 106 (108)
T cd01107 82 EKLAELEAEIEELQRILRLLEDRLK 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788899999999999998764
No 426
>PF15294 Leu_zip: Leucine zipper
Probab=23.71 E-value=9.2e+02 Score=25.83 Aligned_cols=186 Identities=18% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHhHHHHHHHhhcCCChhhHH--HHHHHHHHHHHH----------------HHHhHHHHHhhhcccchhh
Q 008136 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKE--KFEADLKKEIKK----------------LQRYRDQIKTWIQSSEIKD 73 (576)
Q Consensus 12 Dr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKE--KlE~DLKKEIKK----------------LQRlRDQIKtWlasneIKD 73 (576)
+++||-|.-|++.|-+ .+++. ..=+++| .+=.+|+..|+- |+++=.|=-.|--.-. .|
T Consensus 7 ~~~Lk~Vds~F~Dlk~--srL~e-~t~T~~EV~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~~lkl~-~d 82 (278)
T PF15294_consen 7 EQHLKEVDSCFQDLKS--SRLRE-DTYTSDEVTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKWYLKLQ-TD 82 (278)
T ss_pred HHHHHHHHHhhhHHHH--HHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhc-cc
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHh
Q 008136 74 KKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAEL 153 (576)
Q Consensus 74 K~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEi 153 (576)
-. =+|+|.++|. |++|-.-|=-...|.+..-.=. |+.| ..+. -...-|+..|+.|+.+++.+..-+
T Consensus 83 is--------elEn~eLLe~-i~~~E~~~~~~~~~~~~~~~~~---KL~p-l~e~-g~~~ll~kEi~rLq~EN~kLk~rl 148 (278)
T PF15294_consen 83 IS--------ELENRELLEQ-IAEFEKQEFTSSFKPNQETSKP---KLEP-LNES-GGSELLNKEIDRLQEENEKLKERL 148 (278)
T ss_pred HH--------HHHHHHHHHH-HHHHHHhhhcccCCcccccccc---cccc-cccc-chHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhh------hcccCCCCCchhHHHHHHHHHHHH---------HHHHHHHHHHhhhCC-CCChhhhhhhhHHHHHHHHh
Q 008136 154 EGL------TVKKGKTRPPRLTHLETSITRHKA---------HIMKLELILRLLDND-ELSPEQVNDVKDLLEDYVER 215 (576)
Q Consensus 154 E~L------s~KK~Kk~~~rl~eLe~~ieRhk~---------HI~kLE~lLRlLdNd-~Ldpe~V~dIKEdIeyYVE~ 215 (576)
-++ ..+-+++=...+.+++......+. -+..||.-|-.|.++ +-...+-..-...|+.+|..
T Consensus 149 ~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~ 226 (278)
T PF15294_consen 149 KSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQDKESQQKALEETLQS 226 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 427
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.66 E-value=2.5e+02 Score=29.99 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=33.9
Q ss_pred HHHHhHHhHHHHHHHhhcCCCh--hh---------HHHHHHHHHHHHHHHHHhHHHHHh
Q 008136 17 KVQEGVDVFDSIWNKVYDTDNA--NQ---------KEKFEADLKKEIKKLQRYRDQIKT 64 (576)
Q Consensus 17 KV~EGVe~Fd~iyeKl~~a~n~--nQ---------KEKlE~DLKKEIKKLQRlRDQIKt 64 (576)
+++.-++.|.++|+++-+-+.. .+ -++.+--+||.|.-||++|.|++.
T Consensus 147 ~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie~L~k~R~~L~~ 205 (293)
T COG4079 147 KLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIETLRKHRRRLAE 205 (293)
T ss_pred CHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677889999999998743321 11 123666778889989988888763
No 428
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=23.51 E-value=3e+02 Score=21.74 Aligned_cols=36 Identities=31% Similarity=0.324 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHH
Q 008136 177 RHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 214 (576)
Q Consensus 177 Rhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE 214 (576)
+.......||..++....... +.+..+-+.|..+|+
T Consensus 50 ~l~~~~~~lE~~~~~~~~~~~--~~~~~~~~~l~~~l~ 85 (90)
T PF01627_consen 50 RLAELAEQLEQALKSGDKPEA--EELEQLLDELEAMLE 85 (90)
T ss_dssp HHHHHHHHHHHHHHTTHHHHS--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccch--hHHHHHHHHHHHHHH
Confidence 344455666666666555444 556666666666664
No 429
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=23.50 E-value=9.2e+02 Score=25.71 Aligned_cols=184 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred cccchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccch-----------
Q 008136 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEI----------- 71 (576)
Q Consensus 3 a~RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneI----------- 71 (576)
....|..+|.+.-.-+..+...=..+++|+ .+.+.-|+=|..-.+.|..|+.++.-
T Consensus 128 ~~~~l~~~~~~~~~~L~~A~~sD~~v~~k~-------------~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~~i 194 (353)
T cd09236 128 ANPKLYTQAAEYEGYLKQAGASDELVRRKL-------------DEWEDLIQILTGDERDLENFVPSSRRPSIPPELERHV 194 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------------HHHHHHHHHHcCCHHHHHHhCCCCCCCCCCchhhHHH
Q ss_pred -------hhhhhhhhHHHHHHHHHHHHHHHH--------------HHHHHHHhh-----hccccccccccCCC--CCCCh
Q 008136 72 -------KDKKVSASYEQALVDARKLIEREM--------------ERFKICEKE-----TKTKAFSKEGLGQQ--PKTDP 123 (576)
Q Consensus 72 -------KDK~~~a~~~~~L~E~RKlIE~~M--------------ErFK~vEKE-----~KTKafSKEGL~~~--~K~DP 123 (576)
++=. .|...|+.++.++ -.++..|+. .++-.| |.|... .|.||
T Consensus 195 ~~Lr~~l~~l~-------~l~~eR~~~~~~Lk~k~~~DDI~~~ll~~~~~~~~~~~~~~i~~~~f--e~lf~~eL~kf~~ 265 (353)
T cd09236 195 RALRVSLEELD-------RLESRRRRKVERARTKARADDIRPEILREAARLEREYPATEVAPAHF--EDLFDKRLAKYDK 265 (353)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhcccccccccHHHH--HHHHHHHHHHhhH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhh
Q 008136 124 KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVN 203 (576)
Q Consensus 124 ~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~ 203 (576)
....=.+...==..+|.+|....+.|......... .+.+...+..|+......+.-+.+|+.=++.-.. | .+-+.
T Consensus 266 ~~~~l~~~~~~Q~~ll~~i~~~n~~f~~~~~~~~~--~~~re~~lq~L~~ay~~y~el~~nl~eG~kFY~d--L-~~~~~ 340 (353)
T cd09236 266 DLDAVSEEAQEQEEILQQIEVANKAFLQSRKGDPA--TKERERALQSLDLAYFKYKEIVSNLDEGRKFYND--L-AKILS 340 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccChh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHH
Q ss_pred hhhHHHHHHH
Q 008136 204 DVKDLLEDYV 213 (576)
Q Consensus 204 dIKEdIeyYV 213 (576)
.++..++.||
T Consensus 341 ~~~~~~~~fv 350 (353)
T cd09236 341 QFRDACKAWV 350 (353)
T ss_pred HHHHHHHHHH
No 430
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=23.45 E-value=1.1e+03 Score=26.64 Aligned_cols=22 Identities=18% Similarity=0.546 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 008136 41 KEKFEADLKKEIKKLQRYRDQI 62 (576)
Q Consensus 41 KEKlE~DLKKEIKKLQRlRDQI 62 (576)
+..|+..|+.==++|++|+++|
T Consensus 213 ~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 213 AEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777778889999988
No 431
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=23.45 E-value=1.1e+03 Score=26.67 Aligned_cols=52 Identities=27% Similarity=0.339 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008136 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKET 105 (576)
Q Consensus 47 DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~ 105 (576)
||++-|.+|++..+.+|.=+.+ .|.++- . ....+-...+.-++|=+.+.+++
T Consensus 11 dl~~~I~~L~~~i~~~k~eV~~-~I~~~y-----~-df~~~~~~~~~L~~~~~~l~~eI 62 (593)
T PF06248_consen 11 DLRKSISRLSRRIEELKEEVHS-MINKKY-----S-DFSPSLQSAKDLIERSKSLAREI 62 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHH-----H-HHHHHHHhHHHHHHHHHHHHHHH
Confidence 7888888888888888876653 333332 1 33334444444466777777777
No 432
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=23.44 E-value=4.2e+02 Score=22.94 Aligned_cols=59 Identities=22% Similarity=0.306 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008136 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (576)
Q Consensus 130 E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdN 194 (576)
|+.+=|++.|.-++.=++.++.=++.+. ...=...+..+...|+-|+..|...+..+--
T Consensus 1 ~~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~------~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg 59 (111)
T PF09537_consen 1 ETIEALNDLLKGLHDGIEGYEKAAEKAE------DPELKSLFQEFAQERQQHAEELQAEIQELGG 59 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4556677888888888888877766652 1222457788889999999999999888873
No 433
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=23.32 E-value=2.6e+02 Score=33.02 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCC----CCchhHHHHHHHHHHHHHHHHHHHHH
Q 008136 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKT----RPPRLTHLETSITRHKAHIMKLELIL 189 (576)
Q Consensus 130 E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk----~~~rl~eLe~~ieRhk~HI~kLE~lL 189 (576)
..++=|..-|.+|+.|+..+++++.+.....++. .-..++.++..++|.+..|.+||.-+
T Consensus 636 ~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~q~ 699 (759)
T KOG0981|consen 636 KSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEIQM 699 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhhhc
Confidence 3556678899999999999999987763222221 11247788899999999999988644
No 434
>PF01806 Paramyxo_P: Paramyxovirinae P phosphoprotein C-terminal region; InterPro: IPR002693 Sendai virus is a member of the Paramyxovirinae family. Its negative-sense ssRNA genome is packaged by the viral nucleoprotein (N) within a helical nucleocapsid. Paramyxovirinae use this N-RNA (nucleoprotein-RNA) complex as a template for both transcription and replication. During viral genome replication, the synthesis of viral RNA and its encapsidation by N are concomitant. Viral transcription and replication are carried out by viral RNA-dependent RNA polymerase, which consists of two proteins: L polymerase and phosphoprotein P. The L polymerase carries the enzyme activity. Phosphoprotein P binds the viral nucleocapsid, and positions the L polymerase on the template for transcription and replication formed by nucleoprotein-RNA (N-RNA) []. This entry represents phosphoprotein P from Sendai virus as well as from close family members. Phosphoprotein P, an indispensable subunit of the viral polymerase complex, is a modular protein organised into two moieties that are both functionally and structurally distinct: a well-conserved C-terminal moiety that contains all the regions required for transcription, and a poorly conserved, intrinsically unstructured N-terminal moiety that provides several additional functions required for replication. The N-terminal moiety is responsible for binding to newly synthesized free N(0) (nucleoprotein that has not yet bound RNA), in order to prevent the binding of N(0) to cellular RNA. The C-terminal moiety consists of an oligomerisation domain, an N-RNA (nucleoprotein-RNA)-binding domain and an L polymerase-binding domain [, ]. ; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent, 0019079 viral genome replication; PDB: 1R4G_A 1EZJ_A.
Probab=23.32 E-value=1e+02 Score=31.93 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHH
Q 008136 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKF 44 (576)
Q Consensus 10 EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKl 44 (576)
||...+|.++|.++-|+++|.+| ..+|||.+
T Consensus 70 q~q~~l~~ik~~~~~~~e~hrR~----~E~QkEQ~ 100 (248)
T PF01806_consen 70 QIQQELKQIKEDLKKMDESHRRF----IENQKEQN 100 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 78889999999999999999999 66888864
No 435
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=23.13 E-value=6.2e+02 Score=24.25 Aligned_cols=72 Identities=18% Similarity=0.293 Sum_probs=45.8
Q ss_pred chhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhh--HHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHH
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ--KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQA 83 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQ--KEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~ 83 (576)
.+..++|.++..+++..+.++++-+++..-.+... .+.-|.=| +++. .
T Consensus 11 ~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll-----------------------~eq~-------~ 60 (157)
T PF04136_consen 11 QYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLL-----------------------EEQT-------R 60 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------------------HHHH-------H
Confidence 34568888888888888888877776654433221 22222211 2223 5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Q 008136 84 LVDARKLIEREMERFKICEKETKT 107 (576)
Q Consensus 84 L~E~RKlIE~~MErFK~vEKE~KT 107 (576)
|.+--..|...+.-|..+|..++.
T Consensus 61 L~~~ae~I~~~L~yF~~Ld~itr~ 84 (157)
T PF04136_consen 61 LEELAEEISEKLQYFEELDPITRR 84 (157)
T ss_pred HHHHHHHHHHHhHHHhhHHHHHHH
Confidence 666666788888889888888764
No 436
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=23.08 E-value=1.1e+02 Score=34.76 Aligned_cols=33 Identities=39% Similarity=0.365 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 124 KEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 124 ~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
+-+.|.|+.+--++.+|+|+.||-.+-.-+|.|
T Consensus 556 e~k~k~e~~~~~k~s~delr~qi~el~~ive~l 588 (627)
T KOG4348|consen 556 EIKAKVETDDVKKNSLDELRAQIIELLCIVEAL 588 (627)
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 347889999999999999999999888888887
No 437
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=23.08 E-value=2.2e+02 Score=28.43 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 131 TRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 131 ~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
....-....++++.+++.++.||+..
T Consensus 147 ~i~~a~~~~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 147 LIEEAKKKREELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566666666666666554
No 438
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=22.99 E-value=3.2e+02 Score=27.80 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=7.5
Q ss_pred hHHHHHhhhcc
Q 008136 58 YRDQIKTWIQS 68 (576)
Q Consensus 58 lRDQIKtWlas 68 (576)
.|.||+.|-..
T Consensus 199 i~~~i~~l~~P 209 (295)
T PF01031_consen 199 IRKQIEKLEEP 209 (295)
T ss_dssp HHHHHHTTHHH
T ss_pred HHHHHHHHHhH
Confidence 47777777654
No 439
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=22.82 E-value=1.3e+02 Score=28.77 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCC--ChhhhhhhhHHHHHHHHhCCCCcc
Q 008136 170 HLETSITRHKAHIMKLELILRLLDNDEL--SPEQVNDVKDLLEDYVERNQDDFE 221 (576)
Q Consensus 170 eLe~~ieRhk~HI~kLE~lLRlLdNd~L--dpe~V~dIKEdIeyYVE~nqdDF~ 221 (576)
.|+..|...+.| .-..|+.+|+-+.| +.+.+..|.|-|+.+=+++..-|.
T Consensus 86 ai~~al~~akak--n~~av~allD~d~l~l~~dg~~Gldeqi~~lkes~~yLF~ 137 (155)
T PF06810_consen 86 AIKSALKGAKAK--NPKAVKALLDLDKLKLDDDGLKGLDEQIKALKESDPYLFE 137 (155)
T ss_pred HHHHHHHHcCCC--CHHHHHHhcCHHHeeeCCCccccHHHHHHHHHhcCchhcc
Confidence 444445444443 35668888887774 466677788888888777544443
No 440
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=22.81 E-value=1.8e+02 Score=26.44 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhc
Q 008136 45 EADLKKEIKKLQRYRDQIKTWIQ 67 (576)
Q Consensus 45 E~DLKKEIKKLQRlRDQIKtWla 67 (576)
..+|.++|..||++++.|+.++.
T Consensus 88 ~~~l~~~i~~L~~~~~~l~~~~~ 110 (127)
T cd01108 88 IAELERKIAELQAMRRTLQQLAD 110 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999988875
No 441
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=22.80 E-value=6.4e+02 Score=23.65 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhc
Q 008136 41 KEKFEADLKKEIKKLQRYRDQIKTWIQ 67 (576)
Q Consensus 41 KEKlE~DLKKEIKKLQRlRDQIKtWla 67 (576)
.+|.|..|.++.+.|+.|.+.|+.|..
T Consensus 50 ~~~~e~~le~d~~~L~~Le~~~~~~~~ 76 (160)
T PF13094_consen 50 IEKEEAALERDYEYLQELEKNAKALER 76 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666665543
No 442
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=22.79 E-value=4e+02 Score=23.51 Aligned_cols=48 Identities=15% Similarity=0.414 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 008136 134 WLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLE 186 (576)
Q Consensus 134 WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE 186 (576)
-|..-|..+..+++.++..++.+...- ..+.+|...++.....+..|+
T Consensus 8 ~Ir~dIk~vd~KVdaLq~~V~~l~~~~-----~~v~~l~~klDa~~~~l~~l~ 55 (75)
T PF05531_consen 8 VIRQDIKAVDDKVDALQTQVDDLESNL-----PDVTELNKKLDAQSAQLTTLN 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777777763221 233444444444444444333
No 443
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=22.73 E-value=4.1e+02 Score=21.39 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhcccchhh
Q 008136 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKD 73 (576)
Q Consensus 41 KEKlE~DLKKEIKKLQRlRDQIKtWlasneIKD 73 (576)
.+.++.+...-+.+=+.+=++++.+..+.|+++
T Consensus 22 ~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d~~~ 54 (77)
T PF03993_consen 22 FEEQDAEREENLEKKEALIEEAEALAESEDWKE 54 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 344555555556666778889999999988663
No 444
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=22.67 E-value=5.4e+02 Score=22.75 Aligned_cols=57 Identities=16% Similarity=0.416 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchh
Q 008136 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIK 72 (576)
Q Consensus 10 EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIK 72 (576)
+++..++++.--|+.++.-.+......... ++|..||.+|+--|..+-.=+...+..
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~------~~~e~ei~~l~~dr~rLa~eLD~~~ar 61 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKR------DELEEEIQRLDADRSRLAQELDQAEAR 61 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHHHHhhHHHHHHHHHhHHHH
Confidence 466677777777766665544433322221 788888999988887776666554443
No 445
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=22.62 E-value=1.5e+03 Score=27.81 Aligned_cols=138 Identities=19% Similarity=0.142 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcc--cchhhhhhhhhHHHHHHHH
Q 008136 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS--SEIKDKKVSASYEQALVDA 87 (576)
Q Consensus 10 EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlas--neIKDK~~~a~~~~~L~E~ 87 (576)
|-|.+++|-.|-|....+-.+|+...- .-||-.|--+..-|+|+|-.-.-.|...++ .++.++. +.
T Consensus 485 e~etl~~K~ge~i~~L~sE~~~lk~il--~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le----------~~ 552 (961)
T KOG4673|consen 485 EAETLEEKKGELITKLQSEENKLKSIL--RDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALE----------AQ 552 (961)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----------HH
Confidence 445556666666665555555553221 126666666777777777655555555555 2332221 11
Q ss_pred HHHHHHHHH-HHHHHHhhhccccccc----cccCC-----CCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhh
Q 008136 88 RKLIEREME-RFKICEKETKTKAFSK----EGLGQ-----QPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (576)
Q Consensus 88 RKlIE~~ME-rFK~vEKE~KTKafSK----EGL~~-----~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls 157 (576)
-..|+.... -++++-|+...|+-+- +-|.. ..++..+|...+.-.++|..-|.+|.+.++..|.--|.|.
T Consensus 553 ~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~ 632 (961)
T KOG4673|consen 553 ALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELI 632 (961)
T ss_pred HHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111221111 1223334444441110 00000 0112233445555678888999999999988888877775
Q ss_pred cc
Q 008136 158 VK 159 (576)
Q Consensus 158 ~K 159 (576)
..
T Consensus 633 q~ 634 (961)
T KOG4673|consen 633 QQ 634 (961)
T ss_pred hh
Confidence 43
No 446
>PLN03188 kinesin-12 family protein; Provisional
Probab=22.62 E-value=2.1e+02 Score=36.26 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
|.+.++.|.=-..-|.+|++.|.++..|-|..
T Consensus 879 e~~le~~c~~qa~~i~ql~~lv~qyk~e~~~~ 910 (1320)
T PLN03188 879 EMALEEFCTKQASEITQLNRLVQQYKHERECN 910 (1320)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 44455555555566888888888888877665
No 447
>COG2924 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.56 E-value=64 Score=29.12 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc
Q 008136 85 VDARKLIEREMERFKICEKETKTKA 109 (576)
Q Consensus 85 ~E~RKlIE~~MErFK~vEKE~KTKa 109 (576)
.++||++|.+|+.|=-=++.-+.-.
T Consensus 60 ~e~Rk~Leqem~~flf~~~~~~~~G 84 (90)
T COG2924 60 AEHRKLLEQEMVNFLFEGKAVHIEG 84 (90)
T ss_pred HHHHHHHHHHHHHHhhcCccccccc
Confidence 5899999999999954444444433
No 448
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=22.55 E-value=4.6e+02 Score=28.82 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhHhhHH
Q 008136 135 LNNLVSELESQIDSFE 150 (576)
Q Consensus 135 L~~~IdeL~~QiE~~E 150 (576)
+..-+..|..+++.+|
T Consensus 97 a~~e~~~l~~~l~~le 112 (364)
T TIGR00020 97 LDAELKALEKKLAELE 112 (364)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555555
No 449
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.51 E-value=1.1e+02 Score=26.13 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhhCCCCChhhhh-hhhHHHHHH
Q 008136 182 IMKLELILRLLDNDELSPEQVN-DVKDLLEDY 212 (576)
Q Consensus 182 I~kLE~lLRlLdNd~Ldpe~V~-dIKEdIeyY 212 (576)
+.+||.|++.|++|.++-++.- -.++-++.+
T Consensus 1 m~~LEeIV~~LE~gel~Leesl~lyeeG~~L~ 32 (69)
T PRK14070 1 MKELEEIVNRLENEDLPLEESIKLFERGVELY 32 (69)
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 3689999999999999966543 344444433
No 450
>PRK11281 hypothetical protein; Provisional
Probab=22.45 E-value=1.6e+03 Score=28.27 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008136 44 FEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKT 107 (576)
Q Consensus 44 lE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KT 107 (576)
||..|...-.-||....++-+|=+. .+........++..+.+...|=-++.+.-+.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~Nsq--------Li~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQ--------LVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7777776666666666666555211 2333345556666777777777777776655
No 451
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.42 E-value=2.3e+02 Score=28.41 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=28.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChh-------hhhhhhHHHHHHH
Q 008136 166 PRLTHLETSITRHKAHIMKLELILRLLDNDELSPE-------QVNDVKDLLEDYV 213 (576)
Q Consensus 166 ~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe-------~V~dIKEdIeyYV 213 (576)
...-+++.+|+..+-+..+|..+|+ +-+ +.+ ++.+|+++||.+-
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~--ka~--~~~d~l~ie~~L~~v~~eIe~~~ 182 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLE--KAK--TVEDLLEIERELSRVRSEIEQLE 182 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888877777 232 344 4445555666544
No 452
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=22.41 E-value=6.1e+02 Score=24.26 Aligned_cols=30 Identities=27% Similarity=0.628 Sum_probs=24.4
Q ss_pred ccchhhhHHHHHHHHHHhHH-----hHHHHHHHhh
Q 008136 4 SRKLQGEIDRVLKKVQEGVD-----VFDSIWNKVY 33 (576)
Q Consensus 4 ~RKLQ~EIDr~LKKV~EGVe-----~Fd~iyeKl~ 33 (576)
.++....+..+|.++.+.++ .|.++|++-.
T Consensus 59 ~~~~~~~~~~~f~~~a~~L~~~~~~~~~~~w~~~~ 93 (170)
T PF09548_consen 59 SRRSEGPIGEFFERVAERLEKNEGESFAEAWEEAV 93 (170)
T ss_pred HhcccchHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 35677889999999998887 7889998653
No 453
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=22.38 E-value=1.7e+02 Score=26.14 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhh
Q 008136 126 KAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (576)
Q Consensus 126 keK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls 157 (576)
+...|++.-|+-=|++|+.+...+..|++.+.
T Consensus 14 qqAvdtI~LLqmEieELKekn~~L~~e~~~~~ 45 (79)
T PRK15422 14 QQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568888888889999999888888887763
No 454
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=22.34 E-value=29 Score=41.10 Aligned_cols=109 Identities=23% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChh-------HHHHHHHHHHHHH----------HHHHHHHh
Q 008136 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPK-------EKAKSETRDWLNN----------LVSELESQ 145 (576)
Q Consensus 83 ~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~-------EkeK~E~~~WL~~----------~IdeL~~Q 145 (576)
.|-|.++..+...+.|.++|+..++-.=--+-|... ++-. |.+..|+.+=|.. ..-.|...
T Consensus 589 ~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~--~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~ 666 (859)
T PF01576_consen 589 ELEEAQRAREELREQLAVSERRLRALQAELEELREA--LEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAE 666 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 566777777888888888887776655544444321 1211 2222222221111 11123333
Q ss_pred HhhHHHHhhhhh------cccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008136 146 IDSFEAELEGLT------VKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD 193 (576)
Q Consensus 146 iE~~EaEiE~Ls------~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLd 193 (576)
|-.++.++|... ..|-|+-...++.+..-|..-+.|+.+||..-..|+
T Consensus 667 i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE 720 (859)
T PF01576_consen 667 IQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALE 720 (859)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444331 234444444455555666666667777766666655
No 455
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.32 E-value=8.8e+02 Score=25.08 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhH
Q 008136 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYR 59 (576)
Q Consensus 11 IDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlR 59 (576)
+=.+.+||.+.-..||..-. .+==++|+.=|-++||+.|++|
T Consensus 112 ~g~a~~kIa~ar~~~D~~I~-------~~Fl~pL~~~L~~d~k~i~k~R 153 (242)
T cd07600 112 YSDAEEKIAEARLEQDQLIQ-------KEFNAKLRETLNTSFQKAHKAR 153 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666665333 2223466666666666666666
No 456
>PRK05244 Der GTPase activator; Provisional
Probab=22.29 E-value=95 Score=31.03 Aligned_cols=33 Identities=30% Similarity=0.535 Sum_probs=21.8
Q ss_pred HHHHHHHHhhhCCC-CChhh---hhhhhHHHHHHHHh
Q 008136 183 MKLELILRLLDNDE-LSPEQ---VNDVKDLLEDYVER 215 (576)
Q Consensus 183 ~kLE~lLRlLdNd~-Ldpe~---V~dIKEdIeyYVE~ 215 (576)
.+|-.||..|++|+ |..++ |+.--+.|+..++.
T Consensus 107 ~rL~~LLdrLE~Ge~Ls~~dQ~yvD~~LdRie~LM~~ 143 (177)
T PRK05244 107 ERLNALLDRLEAGETLSAEDQKWVDEKLDRIDELMEK 143 (177)
T ss_pred HHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999998 66554 33444555555544
No 457
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=22.27 E-value=1.3e+03 Score=27.08 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008136 168 LTHLETSITRHKAHIMKLELILRLLDN 194 (576)
Q Consensus 168 l~eLe~~ieRhk~HI~kLE~lLRlLdN 194 (576)
+.+.+..|+...-+-..|+..|+++..
T Consensus 288 Lq~~qe~Lea~~qqNqqL~~qls~~~~ 314 (617)
T PF15070_consen 288 LQEAQEHLEALSQQNQQLQAQLSLMAL 314 (617)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence 455566666666666777777766543
No 458
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=22.19 E-value=81 Score=25.54 Aligned_cols=18 Identities=17% Similarity=0.567 Sum_probs=15.3
Q ss_pred HHHHHHhHhhHHHHhhhh
Q 008136 139 VSELESQIDSFEAELEGL 156 (576)
Q Consensus 139 IdeL~~QiE~~EaEiE~L 156 (576)
|+.|++|++.+|.++..|
T Consensus 1 i~aLrqQv~aL~~qv~~L 18 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRL 18 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 678999999999998777
No 459
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=22.18 E-value=6.2e+02 Score=24.10 Aligned_cols=71 Identities=20% Similarity=0.318 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhC---CCCChhhhhhhhHH
Q 008136 132 RDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN---DELSPEQVNDVKDL 208 (576)
Q Consensus 132 ~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdN---d~Ldpe~V~dIKEd 208 (576)
+=++.-+||||+..+-..-+.+. .+ ++...+.+-...+..|-..|..-.. ..+..++|..+++.
T Consensus 25 rie~~G~lDEl~a~igla~~~~~----------~~---~~~~~L~~iq~~L~~l~~~la~~~~~~~~~i~~~~v~~Le~~ 91 (163)
T PF01923_consen 25 RIEAYGTLDELNAFIGLARSEIK----------EE---ELREILERIQNELFDLGAELATPEEDEEPEITEEDVQELEEE 91 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHCT----------TH---HHHHHHHHHHHHHHHHHHHHHTTTTSSSCS--HHHHHHHHHH
T ss_pred eeeeeeeHHHHHHHHHHHHHHcC----------ch---hHHHHHHHHHHHHHHHHHHHcCCCcccccccCHHHHHHHHHH
Confidence 33457789999999888877763 12 3444455555555555455555443 55889999999999
Q ss_pred HHHHHHh
Q 008136 209 LEDYVER 215 (576)
Q Consensus 209 IeyYVE~ 215 (576)
|+.|-+.
T Consensus 92 i~~~~~~ 98 (163)
T PF01923_consen 92 IDEYSEE 98 (163)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998866
No 460
>smart00721 BAR BAR domain.
Probab=22.17 E-value=5.1e+02 Score=24.68 Aligned_cols=56 Identities=21% Similarity=0.316 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHHhhcCCChhh------HHHHHHHHHHHHHHHHHhHHHHHh
Q 008136 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ------KEKFEADLKKEIKKLQRYRDQIKT 64 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQ------KEKlE~DLKKEIKKLQRlRDQIKt 64 (576)
.+|.++.||..--...||....|+.++..... -+++|.+|+.--.+...++++++.
T Consensus 134 ~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~kl~~~e~el~~ak~~fe~~~~~l~~ 195 (239)
T smart00721 134 KEIKKARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESNAQLVE 195 (239)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888875533211 123556665555566665555554
No 461
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=22.15 E-value=6.2e+02 Score=29.45 Aligned_cols=47 Identities=28% Similarity=0.373 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHH-----hHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 008136 46 ADLKKEIKKLQR-----YRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREM 95 (576)
Q Consensus 46 ~DLKKEIKKLQR-----lRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~M 95 (576)
.+|+-|+.|.+| .||..|.=++.. |+|=+ |-|+.....+|+-||...
T Consensus 222 ~eI~e~~~~~~rd~t~~~r~~F~~eL~~A-i~eiR--aqye~~~~~nR~diE~~Y 273 (546)
T KOG0977|consen 222 QEIEEERRKARRDTTADNREYFKNELALA-IREIR--AQYEAISRQNRKDIESWY 273 (546)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHH-HHHHH--HHHHHHHHHhHHHHHHHH
Confidence 344444444443 245555544432 22222 667777777777777644
No 462
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=22.14 E-value=1.1e+03 Score=26.99 Aligned_cols=116 Identities=11% Similarity=0.160 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh-hcccCCCCCchh
Q 008136 90 LIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL-TVKKGKTRPPRL 168 (576)
Q Consensus 90 lIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~L-s~KK~Kk~~~rl 168 (576)
.+-..|-+|+++|.-.+. ..| +||+.++..+-..-|.+++.+=...--.++..+-.| ...+|.-+.-.+
T Consensus 360 ~lr~~la~y~e~e~~~~~----~~~------~d~~~~~~i~~~~~i~~~L~Q~~~~~~~~~e~~~~l~a~~~g~l~~~~~ 429 (485)
T CHL00059 360 KLKLELAQFAELEAFAQF----ASD------LDKATQNQLARGQRLRELLKQSQSAPLTVEEQVATIYTGTNGYLDSLEI 429 (485)
T ss_pred HHHHHHHHHHHHHHHHHh----hcC------CCHHHHHHHHhHHHHHHHhcCCCCCCCCHHHHHHHHHHhccCCcCccCH
Confidence 344556778877777665 233 366555444332222222211110111223222222 234454333334
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhh-hCCCCChhhhhhhhHHHHHHHHh
Q 008136 169 THLETSITRHKAHIM-KLELILRLL-DNDELSPEQVNDVKDLLEDYVER 215 (576)
Q Consensus 169 ~eLe~~ieRhk~HI~-kLE~lLRlL-dNd~Ldpe~V~dIKEdIeyYVE~ 215 (576)
+++..++...-.|+. +...+++.+ +.+.|+.+.-+.|++.|+.|++.
T Consensus 430 ~~v~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 478 (485)
T CHL00059 430 GQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQLEL 478 (485)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 456666666666664 334455555 35679988778899999998875
No 463
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=22.02 E-value=30 Score=39.79 Aligned_cols=15 Identities=40% Similarity=0.375 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHH
Q 008136 527 DQREKFLQRLQQVQQ 541 (576)
Q Consensus 527 DQreKfLQrlQQvqq 541 (576)
+..+|-.+||.+|-.
T Consensus 616 ~~~ekr~~RLkevf~ 630 (722)
T PF05557_consen 616 ASAEKRNQRLKEVFK 630 (722)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356677777777643
No 464
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=21.98 E-value=1.1e+02 Score=28.38 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhHHHHHhhhcc
Q 008136 46 ADLKKEIKKLQRYRDQIKTWIQS 68 (576)
Q Consensus 46 ~DLKKEIKKLQRlRDQIKtWlas 68 (576)
.+|..+|+.||++|++|..|+..
T Consensus 88 ~~i~~~i~~L~~~~~~L~~~i~~ 110 (131)
T cd04786 88 ADIEALEARLAQNKAQLLVLIDL 110 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999988754
No 465
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=21.90 E-value=4.8e+02 Score=29.67 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=15.2
Q ss_pred HHHHHHHHhHHHHHhhhcccc
Q 008136 50 KEIKKLQRYRDQIKTWIQSSE 70 (576)
Q Consensus 50 KEIKKLQRlRDQIKtWlasne 70 (576)
.|.++|+..=++...|+..++
T Consensus 553 ~e~~~i~~~l~~~~~wL~~~~ 573 (627)
T PRK00290 553 DEKEKIEAAIKELKEALKGED 573 (627)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 345666777778888998764
No 466
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=21.86 E-value=4.3e+02 Score=27.21 Aligned_cols=72 Identities=14% Similarity=0.257 Sum_probs=47.0
Q ss_pred CccccchhhhHHHHHHHHHHhHHhHHHHHHHhhcC-----CChhhHHHHHHHHH--HHHHHHHHhHHHHHhhhcccchh
Q 008136 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDT-----DNANQKEKFEADLK--KEIKKLQRYRDQIKTWIQSSEIK 72 (576)
Q Consensus 1 Maa~RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a-----~n~nQKEKlE~DLK--KEIKKLQRlRDQIKtWlasneIK 72 (576)
|...+.||.++..++-.|..|...-+.+=+.+-.+ .+...|..++.=|. +.||-++.....|+.-++..|.-
T Consensus 66 ~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~ 144 (291)
T PF10475_consen 66 MSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYP 144 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34456777888888888877777777666554332 12333444443332 46788888888898888888754
No 467
>PF12848 ABC_tran_2: ABC transporter
Probab=21.84 E-value=2.8e+02 Score=22.81 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhhhcccchh
Q 008136 40 QKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIK 72 (576)
Q Consensus 40 QKEKlE~DLKKEIKKLQRlRDQIKtWlasneIK 72 (576)
||+....-+.++..++|+.+.+++.|+....-+
T Consensus 21 ~k~~~~~~~~~~~~~~~k~~~~l~~~i~r~~~~ 53 (85)
T PF12848_consen 21 QKEERRERQERQYEKQQKEIKRLEEFIRRFRAK 53 (85)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666666666665543
No 468
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=21.83 E-value=6.9e+02 Score=28.10 Aligned_cols=18 Identities=11% Similarity=0.307 Sum_probs=11.4
Q ss_pred ChhhhhhhhHHHHHHHHh
Q 008136 198 SPEQVNDVKDLLEDYVER 215 (576)
Q Consensus 198 dpe~V~dIKEdIeyYVE~ 215 (576)
+++++++..+.++.|+..
T Consensus 571 d~~~i~~~~~~l~~~~~~ 588 (595)
T TIGR02350 571 DVEEIKAKTEELQQALQK 588 (595)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 556666666666666643
No 469
>PF05639 Pup: Pup-like protein; InterPro: IPR008515 This family consists of several short bacterial proteins formely known as (DUF797). It was recently shown that Mycobacterium tuberculosis contains a small protein, Pup (Rv2111c), that is covalently conjugated to the e-NH2 groups of lysines on several target proteins (pupylation) such as the malonyl CoA acyl carrier protein (FabD) []. Pupylation of FabD was shown to result in its recruitment to the mycobacterial proteasome and subsequent degradation analogous to eukaryotic ubiquitin-conjugated proteins. Searches recovered Pup orthologs in all major actinobacteria lineages including the basal bifidobacteria and also sporadically in certain other bacterial lineages []. The Pup proteins were all between 50-90 residues in length and a multiple alignment shows that they all contain a conserved motif with a G [EQ] signature at the C terminus. Thus, all of them are suitable for conjugation via the terminal glutamate or the deamidated glutamine (as shown in the case of the Mycobacterium Pup []). The conserved globular core of Pup is predicted to form a bihelical unit with the extreme C-terminal 6-7 residues forming a tail in the extended conformation. Thus, Pup is structurally unrelated to the ubiquitin fold and has convergently evolved the function of protein modifier. ; PDB: 3M91_D 3M9D_I.
Probab=21.80 E-value=23 Score=30.54 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=17.9
Q ss_pred CChhhhhhhhHHHHHHHHhCCCCccc
Q 008136 197 LSPEQVNDVKDLLEDYVERNQDDFEE 222 (576)
Q Consensus 197 Ldpe~V~dIKEdIeyYVE~nqdDF~E 222 (576)
...+.|++|-|+|+-.||.|.++|+-
T Consensus 36 ~~~~~vD~lLDeID~vLE~NAeeFVr 61 (69)
T PF05639_consen 36 KLTDDVDDLLDEIDSVLETNAEEFVR 61 (69)
T ss_dssp TCHCCHHHHHHHHTTTSSSC------
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999988873
No 470
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=21.77 E-value=3.9e+02 Score=22.66 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008136 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKE 104 (576)
Q Consensus 42 EKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE 104 (576)
+.|-..|.+|..+|+++++-..-+ +.-|. +.|..+|...||.|..-.++.+.+++.
T Consensus 31 ~~L~~~i~~~~~~L~~~~~~~~~~----~~~~~---~~y~~KL~~ikkrm~~l~~~l~~lk~R 86 (92)
T PF14712_consen 31 EELLQQIDRLNEKLKELNEVEQIN----EPFDL---DPYVKKLVNIKKRMSNLHERLQKLKKR 86 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh----hHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999988833322 11122 247889999999999988888877654
No 471
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.72 E-value=2.3e+02 Score=26.72 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhHhhHHHHhhhhhc
Q 008136 135 LNNLVSELESQIDSFEAELEGLTV 158 (576)
Q Consensus 135 L~~~IdeL~~QiE~~EaEiE~Ls~ 158 (576)
|...|.+|..+++.++..++.|..
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777788888888888777744
No 472
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=21.57 E-value=2.5e+02 Score=30.48 Aligned_cols=47 Identities=28% Similarity=0.408 Sum_probs=26.8
Q ss_pred ccccccccCCC-----CCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 108 KAFSKEGLGQQ-----PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 108 KafSKEGL~~~-----~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
+-..|.|.... .+++++| |.+....++.+=.+++..++.-+++++..
T Consensus 31 ~~lgkkg~l~~~~~~l~~l~~ee--r~~~G~~~n~~k~~~~~~~~~~~~~l~~~ 82 (339)
T PRK00488 31 KYLGKKGELTELLKGLGKLPPEE--RKEAGALINELKQAIEAALEERKEELEAA 82 (339)
T ss_pred HHhCCchHHHHHHHHHhcCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554321 2345544 45566677777677766666666666543
No 473
>PF15469 Sec5: Exocyst complex component Sec5
Probab=21.46 E-value=7e+02 Score=23.60 Aligned_cols=114 Identities=13% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHH
Q 008136 60 DQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLV 139 (576)
Q Consensus 60 DQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~I 139 (576)
+++|.++..|=-| -+.+...|..-.+.|+.-+.+.... ..+
T Consensus 2 ~~lk~LV~~Nf~~-----------Fv~~k~tid~i~~~~~~~~~~~~~~----------------------------~~~ 42 (182)
T PF15469_consen 2 EDLKSLVKENFDK-----------FVSCKDTIDDIYEEFRNMKTEAQQD----------------------------SGT 42 (182)
T ss_pred HHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHhhhccccc----------------------------ccH
Q ss_pred HHHHHhHhhHHHHhhhh--hcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC--hhhhhhhhHHHHHH
Q 008136 140 SELESQIDSFEAELEGL--TVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS--PEQVNDVKDLLEDY 212 (576)
Q Consensus 140 deL~~QiE~~EaEiE~L--s~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ld--pe~V~dIKEdIeyY 212 (576)
+.|...++......+.+ ..-.+|.+..++...-..++||+|-..==-.|.+.+.++.-+ ..+-...+.-.+.|
T Consensus 43 ~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 43 EKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
No 474
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=21.42 E-value=1.3e+02 Score=25.10 Aligned_cols=42 Identities=24% Similarity=0.193 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCC-CChhhhhhhhHHHHH
Q 008136 170 HLETSITRHKAHIMKLELILRLLDNDE-LSPEQVNDVKDLLED 211 (576)
Q Consensus 170 eLe~~ieRhk~HI~kLE~lLRlLdNd~-Ldpe~V~dIKEdIey 211 (576)
.++..++.|..-+.+||.-...++..- --.+++++|++....
T Consensus 10 ~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW 52 (71)
T PF10779_consen 10 RIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW 52 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444333333321 113444445444443
No 475
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.37 E-value=2.3e+02 Score=25.45 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008136 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR-PPRLTHLETSITRHKAHIMKLELILRLL 192 (576)
Q Consensus 130 E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~-~~rl~eLe~~ieRhk~HI~kLE~lLRlL 192 (576)
+-.+=|.+.++...+.+..+|.+++.|..+.-=.+ .-++.+++..+....-++.-++.++++|
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344667778889999999999888832110000 1235555666666666666666666655
No 476
>KOG4822 consensus Predicted nuclear membrane protein involved in mRNA transport and sex determination via splicing modulation [RNA processing and modification; Signal transduction mechanisms]
Probab=21.31 E-value=6e+02 Score=32.64 Aligned_cols=45 Identities=20% Similarity=0.156 Sum_probs=21.0
Q ss_pred CCCCCCCCccchhhhhhhhccccccccCCCCCccccccccccccccccccC
Q 008136 421 PSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAK 471 (576)
Q Consensus 421 ~sng~~~~v~~~~~~~krn~lg~d~rl~~~g~~q~l~spl~n~~~~~~~~~ 471 (576)
|-|++.+--=-.+|.----+.++=+.+| .|+..-|+ +|..++..|
T Consensus 1740 pqntsRPpSmhvddfia~e~~~~iPq~p----~~~~K~p~--~~~~~~~~R 1784 (1906)
T KOG4822|consen 1740 PQNTSRPPSMHVDDFIAQELTQSIPQLP----MQLSKLPR--PMQPPQHVR 1784 (1906)
T ss_pred CCCCCCCCceeccchhhHHhhccCCCCC----CCcccccc--ccCCCcccC
Confidence 4566655322333433333444444433 34545443 455566555
No 477
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=21.31 E-value=8.7e+02 Score=25.12 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhh---cccchhhhhhhhhHHHHHHH
Q 008136 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWI---QSSEIKDKKVSASYEQALVD 86 (576)
Q Consensus 10 EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWl---asneIKDK~~~a~~~~~L~E 86 (576)
+|-+..|||.--.-.||..-.|+..+.+...+--.|.+|+.-=-|+-+..+--+.-+ .++++. .+..
T Consensus 134 ~i~k~RKkLe~rRLdyD~~K~r~~kAk~~~~~~~~e~elr~ae~efees~E~a~~~m~~i~~~~~e----------~~~~ 203 (229)
T cd07616 134 TITKERKLLQNKRLDLDAAKTRLKKAKVAEARAAAEQELRITQSEFDRQAEITRLLLEGISSTHAH----------HLRC 203 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhcChH----------HHHH
Confidence 555666666666667777766666554422222223332222222221111111100 022222 6777
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 008136 87 ARKLIEREMERFKICEKE 104 (576)
Q Consensus 87 ~RKlIE~~MErFK~vEKE 104 (576)
.+.+|+.+++=||.|=..
T Consensus 204 L~~lv~AQl~Yh~~~~e~ 221 (229)
T cd07616 204 LNDFVEAQMTYYAQCYQY 221 (229)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 778888888888777443
No 478
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=21.30 E-value=60 Score=27.91 Aligned_cols=16 Identities=50% Similarity=0.665 Sum_probs=10.5
Q ss_pred HHHHhHhhHHHHhhhh
Q 008136 141 ELESQIDSFEAELEGL 156 (576)
Q Consensus 141 eL~~QiE~~EaEiE~L 156 (576)
+|..+++.++.+++..
T Consensus 2 eL~~~~~~l~~~~~~~ 17 (93)
T PF00816_consen 2 ELEAQIKELEKEIEER 17 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5677777777666554
No 479
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=21.28 E-value=3.8e+02 Score=27.56 Aligned_cols=46 Identities=24% Similarity=0.479 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh------CCCCChhhhhhhhHHHHHHHHhC
Q 008136 171 LETSITRHKAHIMKLELILRLLD------NDELSPEQVNDVKDLLEDYVERN 216 (576)
Q Consensus 171 Le~~ieRhk~HI~kLE~lLRlLd------Nd~Ldpe~V~dIKEdIeyYVE~n 216 (576)
+..++.|...|+.||=.||.+++ ...|+.+.+..--.-++||++..
T Consensus 316 ~~~~~~K~~~~~~RlA~ilh~~~~~~~~~~~~I~~~~~~~Ai~l~~~~~~~~ 367 (378)
T PF13148_consen 316 MRSFASKAAEQALRLALILHLFESGGSPPSTEISAETMERAIRLVEYFLEHA 367 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEECHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999 33478999998777999999763
No 480
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=21.25 E-value=2.9e+02 Score=25.05 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 130 ETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 130 E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
=+.+||-.+-+.|..+++.++.++..+
T Consensus 66 l~ieYLl~~q~~L~~~~~~l~~~~~~~ 92 (118)
T PF13815_consen 66 LSIEYLLHCQEYLSSQLEQLEERLQEL 92 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888887665
No 481
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.23 E-value=2.2e+02 Score=25.12 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhHHHHHhhh
Q 008136 46 ADLKKEIKKLQRYRDQIKTWI 66 (576)
Q Consensus 46 ~DLKKEIKKLQRlRDQIKtWl 66 (576)
..|..+|+.|++.++.|..|+
T Consensus 89 ~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 89 EELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777776665
No 482
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.19 E-value=1.2e+02 Score=27.03 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhcc
Q 008136 42 EKFEADLKKEIKKLQRYRDQIKTWIQS 68 (576)
Q Consensus 42 EKlE~DLKKEIKKLQRlRDQIKtWlas 68 (576)
+.-..+|.++|++||+.+..|+.|+..
T Consensus 85 ~~~~~~l~~~i~~l~~~~~~l~~~~~~ 111 (116)
T cd04769 85 EDKKQEIRAQITELQQLLARLDAFEAS 111 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999888764
No 483
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.15 E-value=1.4e+03 Score=26.94 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=10.4
Q ss_pred hhHHHHHHHHhCCC
Q 008136 205 VKDLLEDYVERNQD 218 (576)
Q Consensus 205 IKEdIeyYVE~nqd 218 (576)
|.++|.+||+....
T Consensus 225 v~~~i~~fv~~k~T 238 (611)
T KOG2398|consen 225 VDEDITKFVEAKGT 238 (611)
T ss_pred HHHHHHHHhhccCC
Confidence 45789999987643
No 484
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.11 E-value=5.9e+02 Score=25.90 Aligned_cols=40 Identities=23% Similarity=0.171 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhHHhHHHHHHHhhcCC--ChhhH--HHHHHHHHH
Q 008136 11 IDRVLKKVQEGVDVFDSIWNKVYDTD--NANQK--EKFEADLKK 50 (576)
Q Consensus 11 IDr~LKKV~EGVe~Fd~iyeKl~~a~--n~nQK--EKlE~DLKK 50 (576)
+...++.|....+.|+..+.....+. +.++| ||+..-++|
T Consensus 118 ~q~~~~~l~kaK~~Y~~~cke~e~a~~~~~s~k~leK~~~K~~k 161 (261)
T cd07674 118 LQVQSQHLQKSRENYHSKCVEQERLRREGVPQKELEKAELKTKK 161 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 55667777777777777666665443 23344 555444433
No 485
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.03 E-value=1.6e+03 Score=27.68 Aligned_cols=60 Identities=23% Similarity=0.354 Sum_probs=39.4
Q ss_pred ccchhhhHHHHHHHH-HHhHHhHHHHHHHhhcCCC------hhhHHHHHHHHHHHHHHHH-----HhHHHHH
Q 008136 4 SRKLQGEIDRVLKKV-QEGVDVFDSIWNKVYDTDN------ANQKEKFEADLKKEIKKLQ-----RYRDQIK 63 (576)
Q Consensus 4 ~RKLQ~EIDr~LKKV-~EGVe~Fd~iyeKl~~a~n------~nQKEKlE~DLKKEIKKLQ-----RlRDQIK 63 (576)
.|-||.|=-|---.+ ++|+...+.++.||..--+ .-.-|-||-.-|+||.++. |+|+--|
T Consensus 799 LR~LQkeE~R~qqqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQkq~iE~~Eq~h~~rlR~eak 870 (1187)
T KOG0579|consen 799 LRRLQKEEARQQQQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQKQEIEDTEQAHEHRLRNEAK 870 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356676665554444 5788889999998874322 1225677788888888873 6666444
No 486
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=21.02 E-value=1.9e+03 Score=28.43 Aligned_cols=91 Identities=25% Similarity=0.293 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccccccccCCCCCCChhH
Q 008136 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETK-TKAFSKEGLGQQPKTDPKE 125 (576)
Q Consensus 47 DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~K-TKafSKEGL~~~~K~DP~E 125 (576)
|-..+|.+.+|.++-|+. ++.| .|..--..+|..|.+||+..++-| ++.-.+--+-.. .+
T Consensus 432 ~~~~~l~~~~~~~~~~~~----~E~k----------~l~~~~~~~e~s~~~~~~~~~r~~~~~~~~~s~~~~~-----~~ 492 (1294)
T KOG0962|consen 432 DREVSLEAQKRIKDEIKK----LESK----------GLKDKSFQYEDSTDDLKKLDERLKEAERLLESAEKNN-----DE 492 (1294)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHH----------hHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHhhhhhh-----hh
Confidence 445677788888888887 4555 566666788889999988766533 333332222111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 126 KAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 126 keK~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
..-.+...=++..+-.|..++..+..+++.+
T Consensus 493 ~~l~e~i~~~q~~~~~l~~~~kk~~~~~~~~ 523 (1294)
T KOG0962|consen 493 LALKEKIAEKQNEMAQLEIQKKKLDEELDGL 523 (1294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2223344445556666666666666666655
No 487
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=21.01 E-value=97 Score=29.44 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHHhCCCCccccCCccccccCCCCCC
Q 008136 181 HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDK 237 (576)
Q Consensus 181 HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~nqdDF~E~~dde~iYd~L~Lde 237 (576)
.++.||.-|+ .+.+++++++-++.+.|+++..++.. .+|++-.+||=.+
T Consensus 6 fL~~L~~~L~-----~lp~~e~~e~l~~Y~e~f~d~~~~G~---sEeeii~~LG~P~ 54 (181)
T PF08006_consen 6 FLNELEKYLK-----KLPEEEREEILEYYEEYFDDAGEEGK---SEEEIIAELGSPK 54 (181)
T ss_pred HHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhhhCCC---CHHHHHHHcCCHH
Confidence 3445554444 28889999988888888877554321 2346666665443
No 488
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=21.00 E-value=4.1e+02 Score=22.18 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhHhh
Q 008136 133 DWLNNLVSELESQIDS 148 (576)
Q Consensus 133 ~WL~~~IdeL~~QiE~ 148 (576)
.|..++|++|+..|-.
T Consensus 14 a~qe~~ie~Ln~~v~~ 29 (69)
T PF04102_consen 14 AFQEDTIEELNDVVTE 29 (69)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 489
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.99 E-value=1e+03 Score=25.40 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhc
Q 008136 127 AKSETRDWLNNLVSELESQIDSFEAELEGLTV 158 (576)
Q Consensus 127 eK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~ 158 (576)
+..+-..++...|++++.+...++.+|..+..
T Consensus 229 e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 229 ELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678888888888888888888877754
No 490
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=20.97 E-value=6.4e+02 Score=22.98 Aligned_cols=59 Identities=19% Similarity=0.283 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhh
Q 008136 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDK 74 (576)
Q Consensus 10 EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK 74 (576)
+++++|....++-+.-..+=++.. .-..+-+..+.+|+++.++||+.+. +++..+.+.+
T Consensus 23 d~~~v~~~~~~~k~~~~~l~~~~~--~~~~~l~~~~~el~~~~~~l~~~~~----~ls~~~~~~~ 81 (158)
T PF03938_consen 23 DVDKVFQESPAGKDAQAKLQEKFK--ALQKELQAKQKELQKLQQKLQSQKA----TLSEEERQKR 81 (158)
T ss_dssp -HHHHHHHHHHHHTHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTS--------SSHHHHHH
T ss_pred eHHHHHHhCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhh----ccchhHHHHH
Confidence 456666665555444333322211 1122234444555555555554433 5555555533
No 491
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=20.94 E-value=1e+03 Score=25.27 Aligned_cols=42 Identities=10% Similarity=0.061 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCC---C-hhhhhhhhHHHHHHH
Q 008136 172 ETSITRHKAHIMKLELILRLLDNDEL---S-PEQVNDVKDLLEDYV 213 (576)
Q Consensus 172 e~~ieRhk~HI~kLE~lLRlLdNd~L---d-pe~V~dIKEdIeyYV 213 (576)
+..+++.+.=..+...|...|+-|.= + .+-|..++..++.||
T Consensus 308 ~~~l~~l~~ay~~y~el~~~l~~G~~FY~dL~~~~~~l~~~~~~fv 353 (356)
T cd09237 308 KEFFEKLKKAYNSFKKFSAGLPKGLEFYDDLLKMAKDLAKNVQAFV 353 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444333444444444433320 0 233444555555555
No 492
>PRK05408 oxidative damage protection protein; Provisional
Probab=20.91 E-value=72 Score=28.87 Aligned_cols=14 Identities=50% Similarity=0.935 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHH
Q 008136 85 VDARKLIEREMERF 98 (576)
Q Consensus 85 ~E~RKlIE~~MErF 98 (576)
-++|+.+|++||+|
T Consensus 60 p~ar~~L~~qMekF 73 (90)
T PRK05408 60 PEARKFLEEQMEKF 73 (90)
T ss_pred HHHHHHHHHHHHHH
Confidence 36899999999999
No 493
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.88 E-value=1.4e+02 Score=25.82 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhCCCCChhhhh-hhhHHHHHHHHhC
Q 008136 181 HIMKLELILRLLDNDELSPEQVN-DVKDLLEDYVERN 216 (576)
Q Consensus 181 HI~kLE~lLRlLdNd~Ldpe~V~-dIKEdIeyYVE~n 216 (576)
-+.+||.|++.|++|.|+-++.- ..++-++.+-.++
T Consensus 10 al~~LE~Iv~~LE~~~l~Leesl~lyeeG~~L~k~C~ 46 (76)
T PRK14063 10 AISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCD 46 (76)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999966543 3555555554443
No 494
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.87 E-value=1.3e+03 Score=29.02 Aligned_cols=12 Identities=42% Similarity=0.504 Sum_probs=7.2
Q ss_pred HHhhhccccccc
Q 008136 101 CEKETKTKAFSK 112 (576)
Q Consensus 101 vEKE~KTKafSK 112 (576)
.|+.+++.-|++
T Consensus 461 ~~~~~d~~~~~~ 472 (1049)
T KOG0307|consen 461 VESGTDTSIFSE 472 (1049)
T ss_pred ccccccccccch
Confidence 566666666664
No 495
>PF11176 DUF2962: Protein of unknown function (DUF2962); InterPro: IPR021346 This eukaryotic family of proteins has no known function. ; PDB: 2KKM_A.
Probab=20.82 E-value=2.8e+02 Score=26.69 Aligned_cols=46 Identities=20% Similarity=0.416 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHH
Q 008136 127 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITR 177 (576)
Q Consensus 127 eK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieR 177 (576)
...|++++|..+|......+++++.+ .++|+....|.+-|+..+++
T Consensus 67 t~~e~~~lI~~yl~R~DeEleql~~~-----rR~gRp~s~re~~L~~~~~~ 112 (155)
T PF11176_consen 67 TLEEIHELIERYLHRFDEELEQLKKE-----RRKGRPPSNREDLLEQKIER 112 (155)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHH-----GGGT---TTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCHHHHHHHHHh-----hcCCCCCchHHHHHHHHHHH
Confidence 34677777777777666666666555 45666677787777765543
No 496
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.82 E-value=4.8e+02 Score=25.40 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 008136 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWI 66 (576)
Q Consensus 10 EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWl 66 (576)
+.|+.|++--+-+.....+|.++..... +-+.++..+|.-+++|..+|.-|.+-+
T Consensus 9 ~~d~~L~~~L~~l~~hq~~~~~I~~L~~--e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 9 EADDELSSALEELQEHQENQARIQQLRA--EIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555566666777655432 345677788999999999999998888
No 497
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=20.79 E-value=1.4e+03 Score=26.80 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhHHHHHhhh
Q 008136 45 EADLKKEIKKLQRYRDQIKTWI 66 (576)
Q Consensus 45 E~DLKKEIKKLQRlRDQIKtWl 66 (576)
+..|.-|+|+|+..-.-...|.
T Consensus 207 ~e~L~~e~~rLsn~ekl~~~~~ 228 (557)
T COG0497 207 DEELEEERKRLSNSEKLAEAIQ 228 (557)
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3456667777765544444443
No 498
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=20.75 E-value=3.2e+02 Score=29.07 Aligned_cols=52 Identities=23% Similarity=0.415 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhcc-cchhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008136 42 EKFEADLKKEIKKLQRYRDQIKTWIQS-SEIKDKKVSASYEQALVDARKLIEREMERFK 99 (576)
Q Consensus 42 EKlE~DLKKEIKKLQRlRDQIKtWlas-neIKDK~~~a~~~~~L~E~RKlIE~~MErFK 99 (576)
|..+.+||+.=|+++-+|++|..|-.- .+++.|+ ..|...=..|..++++|+
T Consensus 210 e~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~------~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 210 EELEEELKQKEKEVKEIKERITEMKGRLGELEMES------TRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhc
Confidence 445678899999999999999644332 1333333 134444445556667764
No 499
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=20.74 E-value=68 Score=27.46 Aligned_cols=30 Identities=37% Similarity=0.525 Sum_probs=0.0
Q ss_pred HHHHHHHhHhhHHHHhhhhhcccCCCCCch
Q 008136 138 LVSELESQIDSFEAELEGLTVKKGKTRPPR 167 (576)
Q Consensus 138 ~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~r 167 (576)
.|.||+..|-.+.+|||.|.....||+..|
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~~kK~~sr 55 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAELAKKKASR 55 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccH
No 500
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=20.69 E-value=1.5e+03 Score=27.07 Aligned_cols=184 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhHHhHHHHHHHhhcCCC----------------hhhHHHHHHHHHHHHHHHH-HhHHHHHhhhccc
Q 008136 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN----------------ANQKEKFEADLKKEIKKLQ-RYRDQIKTWIQSS 69 (576)
Q Consensus 7 LQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n----------------~nQKEKlE~DLKKEIKKLQ-RlRDQIKtWlasn 69 (576)
+-.|+++.-++|-.--..-+++..-+..+++ -+|||+.=..|-.+|+-+| -++.-+-+|.+-
T Consensus 240 im~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~q- 318 (629)
T KOG0963|consen 240 IMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQ- 318 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHH---------HHHHHHHHHhhhcccccc-ccccCCC-CCCChhHHHHHHHHHHHHHH
Q 008136 70 EIKDKKVSASYEQALVDARKLIER---------EMERFKICEKETKTKAFS-KEGLGQQ-PKTDPKEKAKSETRDWLNNL 138 (576)
Q Consensus 70 eIKDK~~~a~~~~~L~E~RKlIE~---------~MErFK~vEKE~KTKafS-KEGL~~~-~K~DP~EkeK~E~~~WL~~~ 138 (576)
+...++.|..++.-||+ ..|.-|.==+.-|.--|+ .++-... .-..+-|.--.+-..+|.+-
T Consensus 319 -------I~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e 391 (629)
T KOG0963|consen 319 -------ISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNE 391 (629)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHH
Q ss_pred HHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhH
Q 008136 139 VSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKD 207 (576)
Q Consensus 139 IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKE 207 (576)
.-.|+.+...+..++..+ ..+.+++.....-.+.-|.+||.=++-.++ ..+++-...+++
T Consensus 392 ~a~Lr~~n~~~~~~~~~~--------~~~~~el~~~~~~~ke~i~klE~dl~~~~~-~~~~~~~~~~~~ 451 (629)
T KOG0963|consen 392 NASLRVANSGLSGRITEL--------SKKGEELEAKATEQKELIAKLEQDLLKVQV-SPPAEGATARRE 451 (629)
T ss_pred HHHHhccccccchhHHHH--------HhhhhhhHHHHHHHHHHHHHHHhhHhhccc-CCCCCcchhhhc
Done!