Query 008136
Match_columns 576
No_of_seqs 123 out of 191
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 18:59:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 92.9 1.9 6.5E-05 44.9 14.9 28 136-163 557-584 (597)
2 1i84_S Smooth muscle myosin he 89.9 0.45 1.6E-05 55.1 7.2 27 39-65 892-918 (1184)
3 1i84_S Smooth muscle myosin he 86.6 0.57 2E-05 54.2 5.2 6 7-12 862-867 (1184)
4 1ez3_A Syntaxin-1A; three heli 86.1 8.1 0.00028 32.9 10.9 97 9-106 15-119 (127)
5 3oja_B Anopheles plasmodium-re 84.5 3.6 0.00012 42.8 9.6 16 83-98 478-493 (597)
6 2v0o_A FCHO2, FCH domain only 84.3 27 0.00092 32.7 18.3 16 205-220 249-264 (276)
7 3na7_A HP0958; flagellar bioge 83.3 29 0.001 33.4 14.7 26 39-64 60-85 (256)
8 3ghg_A Fibrinogen alpha chain; 81.1 15 0.00053 40.2 12.9 125 41-214 55-190 (562)
9 2zqm_A Prefoldin beta subunit 80.6 20 0.00069 30.0 11.1 84 47-155 7-95 (117)
10 2efl_A Formin-binding protein 80.4 21 0.0007 33.8 12.3 16 205-220 266-281 (305)
11 1s94_A S-syntaxin; three helix 79.8 14 0.00049 33.5 10.6 99 9-108 46-152 (180)
12 3haj_A Human pacsin2 F-BAR; pa 78.0 12 0.00042 39.0 10.8 13 206-218 280-292 (486)
13 1fio_A SSO1 protein; four heli 77.6 25 0.00085 31.8 11.5 56 8-64 11-71 (196)
14 3haj_A Human pacsin2 F-BAR; pa 76.9 35 0.0012 35.6 13.9 19 199-217 260-278 (486)
15 3aco_A Pacsin2, protein kinase 75.6 33 0.0011 33.9 12.6 15 204-218 285-299 (350)
16 2dfs_A Myosin-5A; myosin-V, in 75.6 11 0.00037 43.9 10.4 14 44-57 954-967 (1080)
17 1fxk_A Prefoldin; archaeal pro 74.4 28 0.00097 28.7 10.1 82 48-154 3-89 (107)
18 1dn1_B Syntaxin 1A, syntaxin b 68.5 32 0.0011 33.6 10.5 97 9-106 38-142 (267)
19 2xhe_B Syntaxin1; exocytosis, 67.5 36 0.0012 33.0 10.6 59 7-66 49-112 (279)
20 2oez_A UPF0289 protein VP2528; 67.2 12 0.0004 37.3 7.1 120 46-194 58-178 (247)
21 3nr7_A DNA-binding protein H-N 66.8 18 0.00062 30.7 7.3 55 131-203 25-79 (86)
22 3fx7_A Putative uncharacterize 65.6 19 0.00065 31.4 7.3 58 4-62 11-68 (94)
23 2p22_C Protein SRN2; endosome, 65.3 17 0.00059 34.6 7.7 25 81-105 85-109 (192)
24 3va9_A Sensor histidine kinase 64.7 26 0.00089 31.1 8.4 45 136-181 119-163 (164)
25 3mq9_A Bone marrow stromal ant 64.3 24 0.00081 36.0 9.0 65 125-189 392-466 (471)
26 2x3v_A Syndapin I, protein kin 63.7 1.1E+02 0.0037 29.8 13.2 14 205-218 277-290 (337)
27 1u2m_A Histone-like protein HL 63.0 4.3 0.00015 35.5 2.9 90 6-111 27-116 (143)
28 2gyq_A YCFI, putative structur 61.8 62 0.0021 30.2 10.6 82 129-216 15-98 (173)
29 1wmi_B RELB, hypothetical prot 60.4 3.7 0.00013 33.6 1.8 40 168-207 6-46 (67)
30 2dfs_A Myosin-5A; myosin-V, in 59.4 62 0.0021 37.8 12.3 9 48-56 926-934 (1080)
31 3nvo_A Zinc transport protein 58.4 65 0.0022 30.1 10.3 63 130-196 155-217 (264)
32 3lbx_B Beta-I spectrin, spectr 57.2 67 0.0023 28.6 9.7 50 10-69 80-129 (185)
33 1t3j_A Mitofusin 1; coiled coi 55.4 21 0.00073 31.1 5.8 62 6-99 29-91 (96)
34 3f6n_A Virion-associated prote 55.0 20 0.00068 32.8 5.7 54 1-54 1-59 (129)
35 2efk_A CDC42-interacting prote 53.0 1.5E+02 0.0052 27.9 15.5 16 205-220 259-274 (301)
36 3tnu_B Keratin, type II cytosk 52.8 14 0.00048 32.6 4.4 21 136-156 35-55 (129)
37 2js5_A Uncharacterized protein 52.3 9.9 0.00034 31.7 3.1 19 46-64 6-24 (71)
38 3abh_A Pacsin2, protein kinase 52.3 1.7E+02 0.0057 28.1 16.5 22 135-156 215-236 (312)
39 1fxk_C Protein (prefoldin); ar 51.4 1E+02 0.0036 26.5 9.7 32 125-156 83-114 (133)
40 2ke4_A CDC42-interacting prote 50.7 40 0.0014 29.1 6.8 64 5-68 18-87 (98)
41 3trt_A Vimentin; cytoskeleton, 49.6 97 0.0033 24.6 8.7 28 126-153 24-51 (77)
42 2gs4_A Protein YCIF; stress pr 49.2 1.1E+02 0.0038 28.2 10.0 81 129-215 8-91 (166)
43 3uun_A Dystrophin; triple heli 48.8 1E+02 0.0035 24.7 9.7 82 127-214 10-92 (119)
44 2efk_A CDC42-interacting prote 48.4 89 0.0031 29.5 9.5 29 186-218 248-276 (301)
45 3f31_A Spectrin alpha chain, b 48.4 9.8 0.00034 33.4 2.7 126 17-154 16-141 (149)
46 3htk_A Structural maintenance 48.2 59 0.002 24.7 6.8 55 137-212 5-59 (60)
47 3uul_A Utrophin; spectrin repe 47.7 1.1E+02 0.0037 24.6 9.7 82 127-214 10-92 (118)
48 2lw1_A ABC transporter ATP-bin 47.5 64 0.0022 26.7 7.4 56 47-102 26-83 (89)
49 1f5n_A Interferon-induced guan 47.3 99 0.0034 33.8 10.8 29 5-33 382-419 (592)
50 3hhm_B NISH2 P85alpha; PI3KCA, 47.3 2.2E+02 0.0074 29.5 12.8 74 123-204 197-275 (373)
51 3viq_B Mating-type switching p 47.0 46 0.0016 28.5 6.5 78 135-238 6-84 (85)
52 1m1j_B Fibrinogen beta chain; 46.7 2.8E+02 0.0094 29.9 13.8 38 18-57 98-135 (464)
53 3g9g_A Suppressor of yeast pro 45.4 2.5E+02 0.0085 28.2 15.7 43 166-216 217-267 (287)
54 2x3v_A Syndapin I, protein kin 45.2 1.9E+02 0.0067 28.0 11.6 27 186-216 266-292 (337)
55 3hhm_B NISH2 P85alpha; PI3KCA, 45.0 19 0.00067 37.2 4.7 36 40-75 220-272 (373)
56 1ezj_A Nucleocapsid phosphopro 44.0 20 0.00069 31.9 3.9 31 10-44 70-100 (115)
57 2zdi_C Prefoldin subunit alpha 43.7 1.1E+02 0.0036 27.3 8.7 32 125-156 93-124 (151)
58 3i2w_A Syndapin, LD46328P; EFC 43.6 1.4E+02 0.0047 28.4 10.1 83 5-101 124-232 (290)
59 2hn1_A CORA, magnesium and cob 43.6 1.4E+02 0.0046 28.1 9.9 60 131-194 181-240 (266)
60 3m91_B Prokaryotic ubiquitin-l 43.4 15 0.0005 28.3 2.5 24 199-222 13-36 (44)
61 2lw9_A Unconventionnal myosin- 43.2 13 0.00045 29.3 2.3 22 47-68 10-31 (51)
62 3ck6_A Putative membrane trans 42.8 66 0.0023 30.0 7.5 57 130-195 144-200 (252)
63 4dyl_A Tyrosine-protein kinase 42.1 77 0.0026 32.4 8.5 29 5-33 122-151 (406)
64 3vkg_A Dynein heavy chain, cyt 42.1 4.9E+02 0.017 34.4 17.1 20 137-156 2035-2054(3245)
65 4dyl_A Tyrosine-protein kinase 41.9 3E+02 0.01 28.1 15.1 56 206-268 259-314 (406)
66 3fb2_A Spectrin alpha chain, b 41.9 1.3E+02 0.0044 27.2 9.2 49 19-70 91-139 (218)
67 3ghg_C Fibrinogen gamma chain; 41.9 53 0.0018 34.9 7.4 84 129-218 23-137 (411)
68 3i00_A HIP-I, huntingtin-inter 41.4 55 0.0019 29.3 6.4 41 137-188 15-55 (120)
69 1deb_A APC protein, adenomatou 39.7 53 0.0018 26.1 5.2 34 139-187 5-38 (54)
70 2gd5_A Charged multivesicular 39.7 49 0.0017 30.4 6.0 95 121-216 6-133 (179)
71 3ghg_A Fibrinogen alpha chain; 39.6 30 0.001 38.0 5.2 99 125-233 77-181 (562)
72 3csx_A Putative uncharacterize 39.0 64 0.0022 27.5 6.1 20 47-66 19-38 (81)
73 2k48_A Nucleoprotein; viral pr 37.3 84 0.0029 28.0 6.8 50 80-150 47-102 (107)
74 2c0g_A ERP29 homolog, windbeut 36.7 50 0.0017 32.0 5.8 49 42-109 194-243 (248)
75 1gmj_A ATPase inhibitor; coile 36.5 30 0.001 29.7 3.7 27 39-65 44-70 (84)
76 3okq_A BUD site selection prot 36.2 2.7E+02 0.0091 25.9 10.4 104 3-106 15-131 (141)
77 2d4u_A Methyl-accepting chemot 35.8 2E+02 0.0067 24.2 10.0 62 10-71 66-128 (176)
78 2ke4_A CDC42-interacting prote 35.7 72 0.0025 27.5 6.0 69 121-194 11-90 (98)
79 2gd5_A Charged multivesicular 35.6 46 0.0016 30.6 5.2 16 77-92 56-71 (179)
80 2nt8_A Cobalamin adenosyltrans 34.9 75 0.0026 31.1 6.7 112 94-216 20-141 (223)
81 3aco_A Pacsin2, protein kinase 34.9 1.2E+02 0.0039 30.0 8.2 26 186-215 275-300 (350)
82 4dnd_A Syntaxin-10, SYN10; str 34.4 2.4E+02 0.0082 25.2 9.5 26 122-153 103-128 (130)
83 3gp4_A Transcriptional regulat 34.0 75 0.0026 28.2 6.1 22 46-67 91-112 (142)
84 3rrk_A V-type ATPase 116 kDa s 33.6 1.9E+02 0.0064 28.5 9.5 47 169-215 116-174 (357)
85 2lig_A Aspartate receptor; che 33.3 1.9E+02 0.0065 23.3 9.6 15 131-145 137-151 (164)
86 1urf_A Protein kinase C-like 1 33.1 1.8E+02 0.0061 24.8 7.8 59 42-101 11-70 (81)
87 3l4q_C Phosphatidylinositol 3- 32.7 3.2E+02 0.011 25.8 14.4 114 84-205 47-167 (170)
88 2a01_A Apolipoprotein A-I; fou 32.2 3.4E+02 0.012 25.9 12.2 54 41-99 61-116 (243)
89 1bf5_A Signal transducer and a 32.1 5.6E+02 0.019 28.4 16.1 51 5-56 15-65 (575)
90 1zww_A SH3-containing GRB2-lik 32.0 2.1E+02 0.0073 27.2 9.4 89 8-102 114-208 (256)
91 3edv_A Spectrin beta chain, br 31.7 3.3E+02 0.011 25.6 12.6 43 23-68 89-131 (323)
92 3swf_A CGMP-gated cation chann 31.3 1.4E+02 0.0049 25.0 6.9 24 168-191 27-50 (74)
93 3szr_A Interferon-induced GTP- 30.6 2E+02 0.0067 31.0 9.7 62 42-106 398-478 (608)
94 1u00_A HSC66, chaperone protei 29.9 1.2E+02 0.0041 28.6 7.2 35 53-93 172-206 (227)
95 3r84_A Mediator of RNA polymer 29.9 89 0.003 26.7 5.6 12 36-47 37-48 (86)
96 4akv_A Sorting nexin-33; trans 29.8 4.6E+02 0.016 26.7 18.2 81 94-194 304-385 (386)
97 1i6z_A BAG-family molecular ch 29.8 2.7E+02 0.0091 25.7 9.0 79 119-199 10-89 (135)
98 1bgc_A Granulocyte colony-stim 29.3 1.4E+02 0.0049 28.4 7.4 51 12-64 72-123 (174)
99 1q06_A Transcriptional regulat 29.2 69 0.0024 28.0 5.0 25 44-68 87-111 (135)
100 2l3y_A Interleukin-6; cytokine 29.0 28 0.00097 33.5 2.6 52 12-64 86-138 (190)
101 3gpv_A Transcriptional regulat 28.9 99 0.0034 27.5 6.0 21 46-66 105-125 (148)
102 2xs1_A Programmed cell death 6 28.6 6.2E+02 0.021 27.8 14.4 28 6-33 493-520 (704)
103 3r2p_A Apolipoprotein A-I; amp 28.5 1.4E+02 0.0049 27.3 7.2 16 84-99 168-183 (185)
104 2v71_A Nuclear distribution pr 28.5 1.2E+02 0.0041 29.1 6.8 82 135-216 54-146 (189)
105 1deq_A Fibrinogen (alpha chain 28.1 3.4E+02 0.012 28.8 10.7 58 5-62 63-133 (390)
106 1alu_A Interleukin-6; cytokine 28.0 79 0.0027 30.2 5.5 52 12-65 83-135 (186)
107 4f61_I Stathmin-like domain R4 28.0 1.7E+02 0.0058 29.2 8.0 107 83-214 43-158 (240)
108 3viq_B Mating-type switching p 28.0 1.1E+02 0.0038 26.2 5.8 53 6-75 5-57 (85)
109 3mq9_A Bone marrow stromal ant 27.8 72 0.0024 32.4 5.5 6 98-103 413-418 (471)
110 1q08_A Zn(II)-responsive regul 27.7 1.1E+02 0.0037 24.6 5.6 24 46-69 49-72 (99)
111 2efl_A Formin-binding protein 27.6 3.8E+02 0.013 25.0 21.3 30 185-218 254-283 (305)
112 4ad8_A DNA repair protein RECN 27.5 97 0.0033 32.2 6.6 42 23-66 179-220 (517)
113 1xs8_A UPF0269 protein YGGX; h 27.4 30 0.001 30.1 2.2 14 85-98 60-73 (91)
114 3vkg_A Dynein heavy chain, cyt 27.1 8.3E+02 0.028 32.4 15.7 25 8-32 1912-1936(3245)
115 1m1j_C Fibrinogen gamma chain; 27.1 1.3E+02 0.0043 31.9 7.3 29 9-37 41-69 (409)
116 4fla_A Regulation of nuclear P 27.0 3E+02 0.01 25.3 9.0 26 127-152 97-122 (152)
117 1i1r_B Viral IL-6; cytokine/re 26.9 98 0.0033 29.5 5.9 52 12-65 68-120 (181)
118 3hnw_A Uncharacterized protein 26.9 1.1E+02 0.0037 27.7 5.9 47 6-57 72-124 (138)
119 1t07_A Hypothetical UPF0269 pr 26.8 31 0.0011 30.2 2.2 14 85-98 62-75 (94)
120 1vp7_A Exodeoxyribonuclease VI 26.5 77 0.0026 27.7 4.7 34 182-215 36-70 (100)
121 2p32_A Heat shock 70 kDa prote 26.5 64 0.0022 27.6 4.2 32 41-75 40-71 (120)
122 4abm_A Charged multivesicular 25.8 1.5E+02 0.005 24.7 6.1 20 172-191 58-77 (79)
123 3onj_A T-snare VTI1; helix, HA 25.8 1.4E+02 0.0048 25.1 6.1 52 13-64 34-91 (97)
124 1t2k_D Cyclic-AMP-dependent tr 25.4 1.8E+02 0.0063 22.4 6.3 39 136-189 21-59 (61)
125 4egw_A Magnesium transport pro 25.2 2.2E+02 0.0074 27.2 8.1 64 130-196 164-227 (280)
126 2c5k_T Syntaxin TLG1, T-snare 25.1 2.4E+02 0.0082 24.0 7.4 52 6-57 36-89 (95)
127 3t98_B Nucleoporin NUP58/NUP45 25.1 1.2E+02 0.0041 26.0 5.5 35 169-203 15-50 (93)
128 2w6b_A RHO guanine nucleotide 24.9 2.4E+02 0.0084 22.6 6.8 43 135-192 8-50 (56)
129 1f5n_A Interferon-induced guan 24.8 7.1E+02 0.024 27.2 13.1 15 200-214 567-581 (592)
130 3hiu_A Uncharacterized protein 24.7 2.3E+02 0.0078 26.3 7.8 25 170-194 41-65 (166)
131 3d5a_X RF1, peptide chain rele 24.2 3.1E+02 0.011 28.6 9.4 26 131-156 70-95 (354)
132 1gmj_A ATPase inhibitor; coile 24.2 2.8E+02 0.0095 23.8 7.5 20 168-187 60-79 (84)
133 3vem_A Helicase protein MOM1; 24.2 1.7E+02 0.0057 26.4 6.5 43 6-60 36-78 (115)
134 1c1g_A Tropomyosin; contractIl 24.1 3.6E+02 0.012 23.5 17.6 12 9-20 13-24 (284)
135 3ogh_B Protein YCIE; iron-bind 24.1 2.4E+02 0.0081 26.4 7.8 26 169-194 43-68 (171)
136 1x79_B RAB GTPase binding effe 24.0 1.7E+02 0.0058 26.1 6.5 80 83-185 14-96 (112)
137 3frt_A Charged multivesicular 23.9 91 0.0031 30.2 5.2 44 47-93 25-72 (218)
138 2kkm_A Translation machinery-a 23.8 1.7E+02 0.0058 26.6 6.7 44 129-177 48-91 (144)
139 1zww_A SH3-containing GRB2-lik 23.8 3.8E+02 0.013 25.4 9.5 13 49-61 148-160 (256)
140 2nrj_A HBL B protein; enteroto 23.7 2.5E+02 0.0085 28.5 8.6 71 18-103 95-165 (346)
141 3gwk_C SAG1039, putative uncha 23.6 2.3E+02 0.0078 22.5 6.8 38 118-157 5-42 (98)
142 1m1j_C Fibrinogen gamma chain; 23.6 5.7E+02 0.02 26.9 11.5 27 168-194 107-133 (409)
143 1yvl_A Signal transducer and a 23.6 5.4E+02 0.019 29.0 11.8 30 5-34 150-179 (683)
144 3trt_A Vimentin; cytoskeleton, 23.4 2.8E+02 0.0094 21.9 9.4 22 135-156 54-75 (77)
145 3iox_A AGI/II, PA; alpha helix 23.4 1.9E+02 0.0064 31.6 7.9 55 7-61 14-81 (497)
146 2riq_A Poly [ADP-ribose] polym 23.3 76 0.0026 29.7 4.3 29 44-72 20-48 (160)
147 3hh0_A Transcriptional regulat 23.2 1E+02 0.0036 27.4 5.1 44 45-95 89-132 (146)
148 2lw1_A ABC transporter ATP-bin 23.1 1.4E+02 0.0049 24.5 5.6 19 139-157 24-42 (89)
149 2wt7_A Proto-oncogene protein 23.0 2.1E+02 0.0072 22.4 6.2 39 136-189 22-60 (63)
150 2iub_A CORA, divalent cation t 22.7 2.9E+02 0.01 27.5 8.8 63 130-195 188-250 (363)
151 3htk_A Structural maintenance 22.6 2.4E+02 0.0083 21.2 6.4 27 41-67 28-54 (60)
152 1dow_A Alpha-catenin; four-hel 22.5 4.5E+02 0.015 25.2 9.6 26 62-97 169-194 (205)
153 3ghg_B Fibrinogen beta chain; 22.4 2.3E+02 0.0078 30.7 8.2 42 15-58 90-131 (461)
154 4etp_A Kinesin-like protein KA 22.1 79 0.0027 32.8 4.6 40 168-213 26-65 (403)
155 2z0v_A SH3-containing GRB2-lik 22.0 3E+02 0.01 25.9 8.3 89 9-100 99-190 (240)
156 1qzv_F Plant photosystem I: su 22.0 94 0.0032 28.9 4.5 50 43-116 13-62 (154)
157 1tqg_A Chemotaxis protein CHEA 21.8 3.2E+02 0.011 22.1 9.4 78 131-210 3-94 (105)
158 3ajw_A Flagellar FLIJ protein; 21.7 3.7E+02 0.013 22.8 10.1 62 128-190 72-133 (150)
159 2p2u_A HOST-nuclease inhibitor 21.5 4.2E+02 0.014 24.4 9.0 66 130-222 16-82 (171)
160 4dci_A Uncharacterized protein 21.4 2E+02 0.0067 26.7 6.6 32 125-156 24-55 (150)
161 3s84_A Apolipoprotein A-IV; fo 21.3 6E+02 0.02 25.0 14.4 39 27-66 4-42 (273)
162 4akv_A Sorting nexin-33; trans 21.2 6.7E+02 0.023 25.6 17.4 47 9-56 184-230 (386)
163 2cpt_A SKD1 protein, vacuolar 21.2 3.9E+02 0.013 23.3 8.2 43 174-216 34-76 (117)
164 1y1u_A Signal transducer and a 21.1 8.7E+02 0.03 26.8 18.2 49 6-54 26-83 (585)
165 3d2f_A Heat shock protein homo 21.0 3.2E+02 0.011 29.9 9.3 45 51-98 579-624 (675)
166 2ys9_A Homeobox and leucine zi 21.0 16 0.00055 30.4 -0.6 41 21-69 17-57 (70)
167 3s84_A Apolipoprotein A-IV; fo 21.0 6E+02 0.021 25.0 14.7 14 86-99 125-138 (273)
168 1a92_A Delta antigen; leucine 20.8 82 0.0028 24.8 3.3 26 41-67 16-41 (50)
169 1ik9_A DNA repair protein XRCC 20.6 2.3E+02 0.0078 27.3 7.2 28 129-156 124-151 (213)
170 4e81_A Chaperone protein DNAK; 20.6 3.4E+02 0.012 25.7 8.3 20 51-70 173-192 (219)
171 1lrz_A FEMA, factor essential 20.5 97 0.0033 31.5 4.8 49 138-186 248-301 (426)
172 2vz4_A Tipal, HTH-type transcr 20.0 94 0.0032 25.9 3.9 26 43-68 81-106 (108)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.90 E-value=1.9 Score=44.87 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=16.0
Q ss_pred HHHHHHHHHhHhhHHHHhhhhhcccCCC
Q 008136 136 NNLVSELESQIDSFEAELEGLTVKKGKT 163 (576)
Q Consensus 136 ~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk 163 (576)
++.+.+|+++++.+.+|+..|..+..+.
T Consensus 557 ~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 557 RAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4456666666666666666664444443
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=89.88 E-value=0.45 Score=55.06 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHhh
Q 008136 39 NQKEKFEADLKKEIKKLQRYRDQIKTW 65 (576)
Q Consensus 39 nQKEKlE~DLKKEIKKLQRlRDQIKtW 65 (576)
.++++++..|+++.+.|+...+++..+
T Consensus 892 ~e~~~l~~~L~~e~~~l~~~e~~l~~l 918 (1184)
T 1i84_S 892 EEKNLLQEKLQAETELYAEAEEMRVRL 918 (1184)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666665555555444
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=86.55 E-value=0.57 Score=54.22 Aligned_cols=6 Identities=17% Similarity=0.296 Sum_probs=2.2
Q ss_pred hhhhHH
Q 008136 7 LQGEID 12 (576)
Q Consensus 7 LQ~EID 12 (576)
|..|++
T Consensus 862 L~~eL~ 867 (1184)
T 1i84_S 862 KDEELQ 867 (1184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 4
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=86.06 E-value=8.1 Score=32.87 Aligned_cols=97 Identities=20% Similarity=0.265 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHHhhcCCChhh--HHHHHHHHHHHHHHHH-HhHHHHHhhhcccch-hhh--h--hhhhH
Q 008136 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ--KEKFEADLKKEIKKLQ-RYRDQIKTWIQSSEI-KDK--K--VSASY 80 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQ--KEKlE~DLKKEIKKLQ-RlRDQIKtWlasneI-KDK--~--~~a~~ 80 (576)
.||...+.+|.+-|+.....++++.++.+... |++++. |-.||+++. .+|+.||.--..++- .++ . ..-.-
T Consensus 15 ~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~-l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir 93 (127)
T 1ez3_A 15 EEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEE-LMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIR 93 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Confidence 47888889999999999999999887665443 556654 446777775 677777775443321 000 0 00112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008136 81 EQALVDARKLIEREMERFKICEKETK 106 (576)
Q Consensus 81 ~~~L~E~RKlIE~~MErFK~vEKE~K 106 (576)
.....-.++..-..|..|-.++.+-|
T Consensus 94 ~~q~~~L~~kf~e~m~~y~~~q~~yr 119 (127)
T 1ez3_A 94 KTQHSTLSRKFVEVMSEYNATQSDYR 119 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455667777788999988877654
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.50 E-value=3.6 Score=42.75 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 008136 83 ALVDARKLIEREMERF 98 (576)
Q Consensus 83 ~L~E~RKlIE~~MErF 98 (576)
.+...++.|+.+.+++
T Consensus 478 ~l~~~~~~i~~~~~~~ 493 (597)
T 3oja_B 478 LLQGLHAEIDTNLRRY 493 (597)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhhhc
Confidence 4555555555555444
No 6
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=84.32 E-value=27 Score=32.66 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=11.5
Q ss_pred hhHHHHHHHHhCCCCc
Q 008136 205 VKDLLEDYVERNQDDF 220 (576)
Q Consensus 205 IKEdIeyYVE~nqdDF 220 (576)
...||..||+.+...+
T Consensus 249 ~~~D~~~fi~~~~tg~ 264 (276)
T 2v0o_A 249 VESLIQKFAESKGTGK 264 (276)
T ss_dssp HHHHHHHHHHHHCCBS
T ss_pred HHHHHHHHHHhcCCCC
Confidence 4577888998876643
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.27 E-value=29 Score=33.40 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHh
Q 008136 39 NQKEKFEADLKKEIKKLQRYRDQIKT 64 (576)
Q Consensus 39 nQKEKlE~DLKKEIKKLQRlRDQIKt 64 (576)
.+..++|.|+..--.++.|++.++..
T Consensus 60 ~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 60 LQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556777777777777777777754
No 8
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=81.10 E-value=15 Score=40.24 Aligned_cols=125 Identities=14% Similarity=0.187 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCC
Q 008136 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120 (576)
Q Consensus 41 KEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K 120 (576)
=+|.|-||++-|.||...-|+| ..+|+-|+.-|+.- -. -|
T Consensus 55 LdkqErDltkrINELKnqLEdl----------------------sKnsKdseqy~k~~---~E----------~L----- 94 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFEY----------------------QKNNKDSHSLTTNI---ME----------IL----- 94 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHH----------------------HHHHHHHHHHHHHH---HH----------TT-----
T ss_pred HHhhcCcHHHHHHHHHHHHHHH----------------------HhhchhHHHHHHHH---HH----------HH-----
Confidence 4688889999888887544433 44455555543211 11 11
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh-h-------
Q 008136 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRL-L------- 192 (576)
Q Consensus 121 ~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRl-L------- 192 (576)
-.+.+...+...=++.+-++|+++|+-++.+|+..- .+|..|+..|+..+--|.|||.-+.. |
T Consensus 95 -r~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl--------snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsC 165 (562)
T 3ghg_A 95 -RGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV--------QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSC 165 (562)
T ss_dssp -SSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTB
T ss_pred -HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 112233335555566666788888888888876641 44667888888888888888764432 1
Q ss_pred ---hCCCCChhhhhhhhHHHHHHHH
Q 008136 193 ---DNDELSPEQVNDVKDLLEDYVE 214 (576)
Q Consensus 193 ---dNd~Ldpe~V~dIKEdIeyYVE 214 (576)
-+-+||.+.-++|+--|+..+.
T Consensus 166 sr~~~~~vd~~sY~~~QKQLeQv~a 190 (562)
T 3ghg_A 166 SRALAREVDLKDYEDQQKQLEQVIA 190 (562)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHHHT
T ss_pred cchheeecchHHHHHHHHHHHHHhh
Confidence 1234555555555555555443
No 9
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=80.58 E-value=20 Score=30.01 Aligned_cols=84 Identities=15% Similarity=0.279 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccccccccccCCCCCC
Q 008136 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKET-----KTKAFSKEGLGQQPKT 121 (576)
Q Consensus 47 DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~-----KTKafSKEGL~~~~K~ 121 (576)
++-..|.++++++.++.. |...++.++.+....+.+-.|. -++-|-.-|=..-
T Consensus 7 e~Q~~i~~~~~l~~~~~~-------------------l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv--- 64 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQL-------------------VVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIV--- 64 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEE---
T ss_pred HHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHh---
Confidence 455677788888777754 3333334444443333333332 2456766663221
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhh
Q 008136 122 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEG 155 (576)
Q Consensus 122 DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~ 155 (576)
+..+.++...|..-++.|...|+.++..++.
T Consensus 65 ---~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~ 95 (117)
T 2zqm_A 65 ---KTTKDKAVAELKEKIETLEVRLNALERQEKK 95 (117)
T ss_dssp ---EECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334555555666665555555555555433
No 10
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=80.39 E-value=21 Score=33.80 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=11.5
Q ss_pred hhHHHHHHHHhCCCCc
Q 008136 205 VKDLLEDYVERNQDDF 220 (576)
Q Consensus 205 IKEdIeyYVE~nqdDF 220 (576)
...||..||+.+...|
T Consensus 266 ~~~D~~~fi~~~~tg~ 281 (305)
T 2efl_A 266 QKNDSQLVIEAYKSGF 281 (305)
T ss_dssp HHHHHHHHHHHHCCCC
T ss_pred chhhHHHHHHHcCCCC
Confidence 3578888898876644
No 11
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=79.78 E-value=14 Score=33.52 Aligned_cols=99 Identities=18% Similarity=0.296 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHHhhcCCChhh--HHHHHHHHHHHHHHHH-HhHHHHHhhhcccc-hhhh-hhh---hhH
Q 008136 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ--KEKFEADLKKEIKKLQ-RYRDQIKTWIQSSE-IKDK-KVS---ASY 80 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQ--KEKlE~DLKKEIKKLQ-RlRDQIKtWlasne-IKDK-~~~---a~~ 80 (576)
.+|...+.+|..-|..++..+.++..+.+... |++++. |-.+|++|. .+|..||..-..++ .+++ ... -+-
T Consensus 46 ~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~-l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir 124 (180)
T 1s94_A 46 EEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEE-LMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIR 124 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHH
Confidence 57888899999999999999999877655443 555554 335666654 56666665443211 0000 000 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008136 81 EQALVDARKLIEREMERFKICEKETKTK 108 (576)
Q Consensus 81 ~~~L~E~RKlIE~~MErFK~vEKE~KTK 108 (576)
.....-.++..-..|..|-.++...|.+
T Consensus 125 ~~q~~~L~~kf~~~m~~yq~~q~~y~~~ 152 (180)
T 1s94_A 125 KTQYSTISRKFVEVMSDYNTTQIDYRDR 152 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2255666778888999999998876654
No 12
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=78.04 E-value=12 Score=39.01 Aligned_cols=13 Identities=8% Similarity=-0.020 Sum_probs=9.6
Q ss_pred hHHHHHHHHhCCC
Q 008136 206 KDLLEDYVERNQD 218 (576)
Q Consensus 206 KEdIeyYVE~nqd 218 (576)
..||+.||+.+..
T Consensus 280 ~~Di~~Fi~~~gt 292 (486)
T 3haj_A 280 VEDLRWFRANHGP 292 (486)
T ss_dssp HHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCC
Confidence 4778888877654
No 13
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=77.56 E-value=25 Score=31.85 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHHhHHhHHHHHHHhhcCCChh----hHHHHHHHHHHHHHHH-HHhHHHHHh
Q 008136 8 QGEIDRVLKKVQEGVDVFDSIWNKVYDTDNAN----QKEKFEADLKKEIKKL-QRYRDQIKT 64 (576)
Q Consensus 8 Q~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~n----QKEKlE~DLKKEIKKL-QRlRDQIKt 64 (576)
-.+|...+.+|..-+..+...+.++..+.... -|++++.. -.+|++| .+++..||.
T Consensus 11 ~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l-~~~i~~~~~~~~~~lk~ 71 (196)
T 1fio_A 11 ISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNF-VAQATDLQFKLKNEIKS 71 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999987766654 35566543 2344433 245555544
No 14
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=76.92 E-value=35 Score=35.60 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=11.3
Q ss_pred hhhhhhhhHHHHHHHHhCC
Q 008136 199 PEQVNDVKDLLEDYVERNQ 217 (576)
Q Consensus 199 pe~V~dIKEdIeyYVE~nq 217 (576)
+..+..+-+.|..-|+.-+
T Consensus 260 ~~~~~~~~e~l~~~i~~id 278 (486)
T 3haj_A 260 VAGYKAIYHDLEQSIRAAD 278 (486)
T ss_dssp CHHHHHHHHHHHHHHHTCC
T ss_pred chhHHHHHHHHHHHHHhCC
Confidence 3455666666666666643
No 15
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=75.65 E-value=33 Score=33.87 Aligned_cols=15 Identities=13% Similarity=0.089 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHhCCC
Q 008136 204 DVKDLLEDYVERNQD 218 (576)
Q Consensus 204 dIKEdIeyYVE~nqd 218 (576)
+...||.+||+.+..
T Consensus 285 d~~~Di~~fi~~~~t 299 (350)
T 3aco_A 285 DAVEDLRWFRANHGP 299 (350)
T ss_dssp CHHHHHHHHHHHTST
T ss_pred CHHHHHHHHHHHcCC
Confidence 357889999988765
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=75.63 E-value=11 Score=43.93 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 008136 44 FEADLKKEIKKLQR 57 (576)
Q Consensus 44 lE~DLKKEIKKLQR 57 (576)
+|..+.+|+.+|+.
T Consensus 954 ~~~~~~~e~~~L~~ 967 (1080)
T 2dfs_A 954 LEITYSTETEKLRS 967 (1080)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 34444444444443
No 17
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=74.42 E-value=28 Score=28.73 Aligned_cols=82 Identities=15% Similarity=0.236 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccccccccccCCCCCCC
Q 008136 48 LKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKET-----KTKAFSKEGLGQQPKTD 122 (576)
Q Consensus 48 LKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~-----KTKafSKEGL~~~~K~D 122 (576)
|-..|.++|+++.++.. |...++.++.+....+.+-.|. -++-|-..|=..-
T Consensus 3 ~Q~~i~~f~~lq~~~~~-------------------l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv---- 59 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQA-------------------ISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILI---- 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEE----
T ss_pred HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHH----
Confidence 44567778888777653 3334444444444444333333 2456766663221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhh
Q 008136 123 PKEKAKSETRDWLNNLVSELESQIDSFEAELE 154 (576)
Q Consensus 123 P~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE 154 (576)
+..+.++...|..-++.|...|+.++..++
T Consensus 60 --~~~~~e~~~~L~~~~e~i~~~i~~le~~~~ 89 (107)
T 1fxk_A 60 --RVAKDELTEELQEKLETLQLREKTIERQEE 89 (107)
T ss_dssp --EECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344555555555555555544444433
No 18
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=68.46 E-value=32 Score=33.57 Aligned_cols=97 Identities=20% Similarity=0.275 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHHhhcCCCh--hhHHHHHHHHHHHHHHHH-HhHHHHHhhhcccc---hhhhhhh--hhH
Q 008136 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNA--NQKEKFEADLKKEIKKLQ-RYRDQIKTWIQSSE---IKDKKVS--ASY 80 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~--nQKEKlE~DLKKEIKKLQ-RlRDQIKtWlasne---IKDK~~~--a~~ 80 (576)
.||...+.+|..-|+.++..+.++..+.+. .-|++++. |-.+|+++- +++..||.--.... -++.... -.-
T Consensus 38 ~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~-l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~~e~Rir 116 (267)
T 1dn1_B 38 EEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEE-LMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIR 116 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHH
Confidence 578888999999999999999998876654 34666665 556666553 56666665433211 0010000 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008136 81 EQALVDARKLIEREMERFKICEKETK 106 (576)
Q Consensus 81 ~~~L~E~RKlIE~~MErFK~vEKE~K 106 (576)
.....-.++..-..|..|..+++.-+
T Consensus 117 k~q~~~L~~~f~~~m~~yq~~Q~~y~ 142 (267)
T 1dn1_B 117 KTQHSTLSRKFVEVMSEYNATQSDYR 142 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344455666677777777665543
No 19
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=67.50 E-value=36 Score=32.97 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=40.6
Q ss_pred hhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhh----HHHHHHHHHHHHHHH-HHhHHHHHhhh
Q 008136 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ----KEKFEADLKKEIKKL-QRYRDQIKTWI 66 (576)
Q Consensus 7 LQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQ----KEKlE~DLKKEIKKL-QRlRDQIKtWl 66 (576)
+-.+|...+.+|..-|..+..++.++..+..... +++++ +|-.+|++| .+++..||..-
T Consensus 49 ~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie-~l~~~i~~~~~~i~~~lk~l~ 112 (279)
T 2xhe_B 49 RVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQ-DTMARISALGNKIRADLKQIE 112 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888999999999998888766655544 55555 455666654 35666666543
No 20
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=67.19 E-value=12 Score=37.28 Aligned_cols=120 Identities=16% Similarity=0.135 Sum_probs=74.8
Q ss_pred HHHHHH-HHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChh
Q 008136 46 ADLKKE-IKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPK 124 (576)
Q Consensus 46 ~DLKKE-IKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~ 124 (576)
+|||-| ||.|.|.|-.++.|..+.+|- .. .|......|+.....- ...+|..-.
T Consensus 58 ~dlK~eLlKeLERq~~~L~~~~~~P~Vd-~~-------~l~~~l~~l~~~~~~L-----------------~~~~r~Gq~ 112 (247)
T 2oez_A 58 IQLKSELAKDLEKQRLSYRHWLNVEGVD-QE-------ALNSLLNEIDVVHSQL-----------------MGAERFGQA 112 (247)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTTTCTTSC-HH-------HHHHHHHHHHHHHHHH-----------------HHCCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcC-HH-------HHHHHHHHHHHHHHHH-----------------HhcCcccch
Confidence 477776 578999999999999999885 33 5777777777755333 322222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdN 194 (576)
- .--+||..+=.-+..-=-.++-|+=.+..=-.+....|..+++.|++-..-=..-|.++|++|-+
T Consensus 113 L----rede~L~~iRQR~~iPGG~C~FDLP~yh~Wl~~p~~~R~~dl~~W~~~l~pl~~al~liL~LlR~ 178 (247)
T 2oez_A 113 L----KEDRFLSSIRQRFNLPGGSCCFDLPALHYWLHLPIERKKHDANQWQKSLKPLSDALTLWLKLARE 178 (247)
T ss_dssp H----HHCHHHHHHHHHHHC----CGGGCHHHHHHHTSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred h----hHhHHHHHHHhhhcCCCccCCcCcHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 12346665443333333445555555533233344467788888888888888888999999854
No 21
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=66.80 E-value=18 Score=30.73 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhh
Q 008136 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVN 203 (576)
Q Consensus 131 ~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~ 203 (576)
..+||.++++.|+.=|+.-+.|.+. ...-..-+..||+.++.+|..+.|+|+++-
T Consensus 25 ~le~Lee~leKl~~VveERree~~~------------------~~~~~~er~~Kl~~~~e~l~~~GI~~eeL~ 79 (86)
T 3nr7_A 25 TLETLEEMLEKLEVVVNERREEESA------------------AAAEVEERTRKLQQYREMLIADGIDPNELL 79 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 4567777777777777666555432 334455678899999999999999998864
No 22
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=65.60 E-value=19 Score=31.37 Aligned_cols=58 Identities=14% Similarity=0.329 Sum_probs=51.1
Q ss_pred ccchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHH
Q 008136 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62 (576)
Q Consensus 4 ~RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQI 62 (576)
.|...+++++-.--+++-+.....-|+.|. +=-..++.|||.++++=++.|+|+-+..
T Consensus 11 lr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~-sWqDqkr~kFee~fe~l~s~l~~f~e~a 68 (94)
T 3fx7_A 11 VREFVGHLERFKELLREEVNSLSNHFHNLE-SWRDARRDKFSEVLDNLKSTFNEFDEAA 68 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-SCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788999999999999999999999995 6677889999999999999999998754
No 23
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=65.28 E-value=17 Score=34.62 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 008136 81 EQALVDARKLIEREMERFKICEKET 105 (576)
Q Consensus 81 ~~~L~E~RKlIE~~MErFK~vEKE~ 105 (576)
...|.+.|..|+.+++.|+.+|.+-
T Consensus 85 ~~~Le~~r~~l~~~l~~~~~L~~~~ 109 (192)
T 2p22_C 85 FEDLHEQKDKVQALLENARILESKY 109 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999988
No 24
>3va9_A Sensor histidine kinase; four-alpha-helix bundle, histidine kinase family 9, phosphotransfer, transferase two-component system; 2.30A {Rhodopseudomonas palustris}
Probab=64.73 E-value=26 Score=31.11 Aligned_cols=45 Identities=13% Similarity=0.316 Sum_probs=17.3
Q ss_pred HHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHH
Q 008136 136 NNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAH 181 (576)
Q Consensus 136 ~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~H 181 (576)
+..+|.++..++.+..+-+.|-..+ .....+....-..++.|..|
T Consensus 119 k~~md~iR~~~~~~~~~E~~lL~~R-~~~~~~~~~~~~~~~~~~~~ 163 (164)
T 3va9_A 119 DRLTERIETSLSVLTRAEQALLIQR-LSKHDRESLAAALLEHHHHH 163 (164)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccC
Confidence 3468888888888888766663322 22223333455566666555
No 25
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=64.32 E-value=24 Score=35.96 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhc----------ccCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----------KKGKTRPPRLTHLETSITRHKAHIMKLELIL 189 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~----------KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lL 189 (576)
+.+...+..||+.-|+++++-.-+.|+.....++ ||.-....|+++|+..|...+..+..++--+
T Consensus 392 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 392 VMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566678888888888888877777777655521 2222233467777777776666666665443
No 26
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=63.74 E-value=1.1e+02 Score=29.79 Aligned_cols=14 Identities=7% Similarity=0.045 Sum_probs=10.5
Q ss_pred hhHHHHHHHHhCCC
Q 008136 205 VKDLLEDYVERNQD 218 (576)
Q Consensus 205 IKEdIeyYVE~nqd 218 (576)
...||.+||+.+..
T Consensus 277 ~~~Di~~fi~~~~t 290 (337)
T 2x3v_A 277 AQEDLRWFRSTSGP 290 (337)
T ss_dssp HHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHhCC
Confidence 46788888888755
No 27
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=62.99 E-value=4.3 Score=35.54 Aligned_cols=90 Identities=9% Similarity=0.139 Sum_probs=18.2
Q ss_pred chhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHH
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALV 85 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~ 85 (576)
+|+.+....-+.+..=-..|+..++++..+-+.++|++.|.+|.+-...+|+++.... .++.- .-.
T Consensus 27 ~l~~~~~~~~~el~~~~~el~~~~~~lq~~ls~~~~~~~~~el~~~~~~~q~~~~~~~-----~~l~~---------~~~ 92 (143)
T 1u2m_A 27 TLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFE-----QDRAR---------RSN 92 (143)
T ss_dssp TTC--------------------------------------------------------------CHH---------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH---------HHH
Confidence 3444333333344444455566666665444677888999988888888888877632 23221 223
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccc
Q 008136 86 DARKLIEREMERFKICEKETKTKAFS 111 (576)
Q Consensus 86 E~RKlIE~~MErFK~vEKE~KTKafS 111 (576)
+.+..|..++ .++|+.-.|.+.|+
T Consensus 93 ~~~~~i~~~i--~~ai~~vak~~gy~ 116 (143)
T 1u2m_A 93 EERGKLVTRI--QTAVKSVANSQDID 116 (143)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHTTCS
T ss_pred HHHHHHHHHH--HHHHHHHHHHCCCe
Confidence 4445555544 45678888888876
No 28
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=61.78 E-value=62 Score=30.16 Aligned_cols=82 Identities=9% Similarity=0.104 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCC--CCChhhhhhhh
Q 008136 129 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND--ELSPEQVNDVK 206 (576)
Q Consensus 129 ~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd--~Ldpe~V~dIK 206 (576)
.-..+||+++..-=++=++.+..-++.+ ..++=...++..++-++-||.+||.|++.|.-. .+..+-+..|-
T Consensus 15 dlf~~~L~Diy~aE~q~~~aL~~~~~~a------~~p~Lk~~l~~H~~eT~~qi~rLe~i~~~lg~~~~~~~c~am~gli 88 (173)
T 2gyq_A 15 DLLLHGLRDIYYAEQQITKALPKMIEQA------TNRDLSQGLTSHLEETQKQIERLDQVFKKLGQKPSGVNCPAIDGLI 88 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHHHHHH
Confidence 5577888887653333334444443333 112223467778888899999999999999863 34557777776
Q ss_pred HHHHHHHHhC
Q 008136 207 DLLEDYVERN 216 (576)
Q Consensus 207 EdIeyYVE~n 216 (576)
..-+..++..
T Consensus 89 ~e~~~~~~~~ 98 (173)
T 2gyq_A 89 KEADETAGEI 98 (173)
T ss_dssp HHHHHHHHTB
T ss_pred HHHHHHHhcc
Confidence 6666666653
No 29
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=60.41 E-value=3.7 Score=33.63 Aligned_cols=40 Identities=23% Similarity=0.415 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CChhhhhhhhH
Q 008136 168 LTHLETSITRHKAHIMKLELILRLLDNDE-LSPEQVNDVKD 207 (576)
Q Consensus 168 l~eLe~~ieRhk~HI~kLE~lLRlLdNd~-Ldpe~V~dIKE 207 (576)
+.+.-.-++|.|-||.+||-+|=-+..|+ |..+++.+|..
T Consensus 6 v~~vl~ELeRlkveiQRLE~ml~p~~~~e~v~eeEl~ei~~ 46 (67)
T 1wmi_B 6 VGDVLKELERLKVEIQRLEAMLMPEERDEDITEEEIAELLE 46 (67)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTSCBCCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHH
Confidence 33456678999999999999987666666 99888888753
No 30
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=59.39 E-value=62 Score=37.75 Aligned_cols=9 Identities=44% Similarity=0.667 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q 008136 48 LKKEIKKLQ 56 (576)
Q Consensus 48 LKKEIKKLQ 56 (576)
|.++|..||
T Consensus 926 LE~kl~eLq 934 (1080)
T 2dfs_A 926 LENKIMQLQ 934 (1080)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 333444443
No 31
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=58.35 E-value=65 Score=30.15 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 008136 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 196 (576)
Q Consensus 130 E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~ 196 (576)
.+.+..-.++++|+.++|.+|.++- . + ++..-.++-.|+..+-+.+..+.-+..++..|.++.
T Consensus 155 ~ivd~y~~~l~~l~~~id~lE~~l~--~-~-~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 217 (264)
T 3nvo_A 155 ALTDHASEFIEELHDKIIDLEDNLL--D-Q-QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASER 217 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC--------CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--c-C-CchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 4555666677777777777777652 1 2 334457899999999999999999988888887654
No 32
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=57.16 E-value=67 Score=28.63 Aligned_cols=50 Identities=20% Similarity=0.372 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhccc
Q 008136 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69 (576)
Q Consensus 10 EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasn 69 (576)
+|...+..+.+.-+.|...|++- +.+|+.-| ++.+..|-=+++-.|+..-
T Consensus 80 ~i~~~l~~L~~~w~~L~~~w~~r--------~~~L~~~l--~l~~F~~d~~~~~~Wl~~~ 129 (185)
T 3lbx_B 80 EIREKLQQVMSRRKEMNEKWEAR--------WERLRMLL--EVCQFSRDASVAEAWLIAQ 129 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH--HHHHHHHhHHHHHHHHHHh
Confidence 44455555555555555555433 77777666 3445556667888998764
No 33
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=55.44 E-value=21 Score=31.13 Aligned_cols=62 Identities=26% Similarity=0.446 Sum_probs=32.2
Q ss_pred chhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhccc-chhhhhhhhhHHHHH
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS-EIKDKKVSASYEQAL 84 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasn-eIKDK~~~a~~~~~L 84 (576)
.+|+|++-+|.+...-|+.+ ..||+.|||.|.+-=++|-.-+... =+|+|.
T Consensus 29 QVQqELs~tfarLc~~Vd~t-------------------~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA--------- 80 (96)
T 1t3j_A 29 QVQQEMATTFARLCQQVDMT-------------------QKHLEEEIARLSKEIDQLEKMQNNSKLLRNKA--------- 80 (96)
T ss_dssp ------CCHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---------
Confidence 46788888777776655544 4566666666655444443322221 124444
Q ss_pred HHHHHHHHHHHHHHH
Q 008136 85 VDARKLIEREMERFK 99 (576)
Q Consensus 85 ~E~RKlIE~~MErFK 99 (576)
-.|+.+.|+|.
T Consensus 81 ----~~L~~eLe~F~ 91 (96)
T 1t3j_A 81 ----VQLESELENFS 91 (96)
T ss_dssp ----HHHHHHHHHHH
T ss_pred ----HHHHHHHHHHH
Confidence 36788888885
No 34
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=55.00 E-value=20 Score=32.79 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=41.4
Q ss_pred CccccchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCC-----hhhHHHHHHHHHHHHHH
Q 008136 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN-----ANQKEKFEADLKKEIKK 54 (576)
Q Consensus 1 Maa~RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n-----~nQKEKlE~DLKKEIKK 54 (576)
||+.--+|.||+.++.-|.+-+..-+.|.++..++.. ..--.|+=.||-++|+|
T Consensus 1 ~~nl~~i~~ei~e~~~~i~~l~~~Ik~il~~~~st~~~~~~lEsiAAKIIkDisdkId~ 59 (129)
T 3f6n_A 1 MANLNQIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIVNDLTKLIND 59 (129)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHHHHHHHhc
Confidence 8888899999999999999999999999999988544 12234555677777765
No 35
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=53.02 E-value=1.5e+02 Score=27.89 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=11.6
Q ss_pred hhHHHHHHHHhCCCCc
Q 008136 205 VKDLLEDYVERNQDDF 220 (576)
Q Consensus 205 IKEdIeyYVE~nqdDF 220 (576)
...||..||+.+...|
T Consensus 259 ~~~D~~~fi~~~~~g~ 274 (301)
T 2efk_A 259 PKNDSHVLIELHKSGF 274 (301)
T ss_dssp HHHHHHHHHHHTGGGC
T ss_pred chhhHHHHHHHcCCCC
Confidence 4678888998876544
No 36
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=52.78 E-value=14 Score=32.57 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=16.7
Q ss_pred HHHHHHHHHhHhhHHHHhhhh
Q 008136 136 NNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 136 ~~~IdeL~~QiE~~EaEiE~L 156 (576)
+.-|.+|+++|..+++|++++
T Consensus 35 k~Ei~elrr~iq~L~~el~~l 55 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNV 55 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344778888888888888887
No 37
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=52.31 E-value=9.9 Score=31.71 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhHHHHHh
Q 008136 46 ADLKKEIKKLQRYRDQIKT 64 (576)
Q Consensus 46 ~DLKKEIKKLQRlRDQIKt 64 (576)
.+||||||||+|.=-|.|.
T Consensus 6 ~eLkkevkKL~~~A~q~km 24 (71)
T 2js5_A 6 EELKAKLKKLNAQATALKM 24 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4799999999998877775
No 38
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=52.29 E-value=1.7e+02 Score=28.13 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhHhhHHHHhhhh
Q 008136 135 LNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 135 L~~~IdeL~~QiE~~EaEiE~L 156 (576)
...+|..++..-..++.++..+
T Consensus 215 Y~~~v~~~n~~~~~~~~~~~~~ 236 (312)
T 3abh_A 215 YEKSLKELDQGTPQYMENMEQV 236 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 3456777777777777666443
No 39
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=51.40 E-value=1e+02 Score=26.53 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
|+...|+.+||..-|+.|+.+++.++.+++.+
T Consensus 83 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l 114 (133)
T 1fxk_C 83 KKNFEDAMESIKSQKNELESTLQKMGENLRAI 114 (133)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999988887665
No 40
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=50.69 E-value=40 Score=29.12 Aligned_cols=64 Identities=14% Similarity=0.342 Sum_probs=38.8
Q ss_pred cchhhhHHHHHHHH------HHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcc
Q 008136 5 RKLQGEIDRVLKKV------QEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS 68 (576)
Q Consensus 5 RKLQ~EIDr~LKKV------~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlas 68 (576)
+|||+.|+++-+.| .||++---.+|.+=-.-.++..-|..=.++.+.|.+|+--+-.+..|++-
T Consensus 18 kkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 18 KRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554444 57777777777664444444433555556667777777666677777764
No 41
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=49.64 E-value=97 Score=24.64 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHh
Q 008136 126 KAKSETRDWLNNLVSELESQIDSFEAEL 153 (576)
Q Consensus 126 keK~E~~~WL~~~IdeL~~QiE~~EaEi 153 (576)
+-|.|+..|.+.-+++|+.++.....++
T Consensus 24 knr~EaE~~y~~k~eel~~~~~~~~~~l 51 (77)
T 3trt_A 24 KNLQEAEEWYKSKFADLSEAANRNNDAL 51 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4456666677766676666666665554
No 42
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4
Probab=49.16 E-value=1.1e+02 Score=28.22 Aligned_cols=81 Identities=5% Similarity=0.068 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh-hhC--CCCChhhhhhh
Q 008136 129 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRL-LDN--DELSPEQVNDV 205 (576)
Q Consensus 129 ~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRl-LdN--d~Ldpe~V~dI 205 (576)
.-..+||+++..-=++=++.+..-++.+ ..++=...++..++-++-||.+||.|++. |.- ..+..+-+..|
T Consensus 8 dlf~~~L~D~y~aE~q~~~al~~~~~~a------~~p~Lk~~l~~h~~eT~~qi~rLe~i~~~~lg~~~~~~~c~am~gl 81 (166)
T 2gs4_A 8 DVFIHLLSDTYSAEKQLTRALAKLARAT------SNEKLSQAFHAHLEETHGQIERIDQVVESESNLKIKRMKCVAMEGL 81 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC------SCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHHHHH
Confidence 3456677776543222223333333222 12222446778888889999999999999 875 33445666666
Q ss_pred hHHHHHHHHh
Q 008136 206 KDLLEDYVER 215 (576)
Q Consensus 206 KEdIeyYVE~ 215 (576)
-..-+..++.
T Consensus 82 i~e~~~~~~~ 91 (166)
T 2gs4_A 82 IEEANEVIES 91 (166)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHhc
Confidence 6666666644
No 43
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=48.77 E-value=1e+02 Score=24.66 Aligned_cols=82 Identities=16% Similarity=0.230 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHH-HhhhCCCCChhhhhhh
Q 008136 127 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELIL-RLLDNDELSPEQVNDV 205 (576)
Q Consensus 127 eK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lL-RlLdNd~Ldpe~V~dI 205 (576)
.-.+...||.++-..|..+-+ .-.+++.+... -.+...++.-|..|+-.|..+...- ++|..+..+++....|
T Consensus 10 ~l~el~~WL~~~e~~l~~~~~-~~~d~~~v~~~-----l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i 83 (119)
T 3uun_A 10 ALEEVLSWLLSAEDTLQAQGE-ISNDVEVVKDQ-----FHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEV 83 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS-CCSSHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCC-CCCCHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 345677788776555554311 11122222000 0123455666666666666664433 4566777888877777
Q ss_pred hHHHHHHHH
Q 008136 206 KDLLEDYVE 214 (576)
Q Consensus 206 KEdIeyYVE 214 (576)
++.++..-+
T Consensus 84 ~~~l~~l~~ 92 (119)
T 3uun_A 84 QEQMNLLNS 92 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665443
No 44
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=48.38 E-value=89 Score=29.49 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=19.7
Q ss_pred HHHHHhhhCCCCChhhhhhhhHHHHHHHHhCCC
Q 008136 186 ELILRLLDNDELSPEQVNDVKDLLEDYVERNQD 218 (576)
Q Consensus 186 E~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~nqd 218 (576)
+.|...+++ +||+ .||+..|+.|--....
T Consensus 248 ~~l~~~~~~--id~~--~D~~~fi~~~~~g~~~ 276 (301)
T 2efk_A 248 EGMKVAANA--VDPK--NDSHVLIELHKSGFAR 276 (301)
T ss_dssp HHHHHHHHH--CCHH--HHHHHHHHHTGGGCCC
T ss_pred HHHHHHHHh--cCch--hhHHHHHHHcCCCCCC
Confidence 344444444 5665 7899999999887644
No 45
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=48.35 E-value=9.8 Score=33.37 Aligned_cols=126 Identities=13% Similarity=0.205 Sum_probs=67.1
Q ss_pred HHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008136 17 KVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREME 96 (576)
Q Consensus 17 KV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~ME 96 (576)
.|.+=++.....|+++... ...-+.|||.-|+ +.+.++-=+.+..||..-+-- .....|.+ =..|+..+.
T Consensus 16 ~I~~r~~~l~~r~~~L~~~-a~~R~~~Le~s~~--l~~F~~d~~el~~Wi~ek~~~--~~~~~~~d-----~~~v~~~l~ 85 (149)
T 3f31_A 16 DIQERRQQVLDRYHRFKEL-STLRRQKLEDSYR--FQFFQRDAEELEKWIQEKLQI--ASDENYKD-----PTNLQGKLQ 85 (149)
T ss_dssp HHHHHHHHHHHHTCSCHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH--TTSCSSCS-----SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH--HcCcccCC-----HHHHHHHHH
Confidence 4555555566666666443 2334788998883 677777778899998763211 00011111 024666777
Q ss_pred HHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhh
Q 008136 97 RFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELE 154 (576)
Q Consensus 97 rFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE 154 (576)
+++++|.|.....-+=+.+..... .. -.......++|...+++|+.+-+.+....+
T Consensus 86 kH~afe~El~a~~~~l~~v~~~g~-~L-i~~~~~~~~~I~~rl~~l~~~W~~L~~~~~ 141 (149)
T 3f31_A 86 KHQAFEAEVQANSGAIVKLDETGN-LM-ISEGHFASETIRTRLMELHRQWELLLEKMR 141 (149)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHH-HH-HHHTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HH-HhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877654433333311000 00 001112345667777777777666655543
No 46
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=48.17 E-value=59 Score=24.69 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=26.9
Q ss_pred HHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHH
Q 008136 137 NLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDY 212 (576)
Q Consensus 137 ~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyY 212 (576)
+.+..|+..++.++.++..+ ..+++..-.+++-+...|+.+. +.|..++..|+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~k~~~~~~~~~l~~~~----------~~I~~~k~qi~~y 59 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLK-----------TDEFLKAKEKINEIFEKLNTIR----------DEVIKKKNQNEYY 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhc
Confidence 34445555555554444332 2234444444444555554443 4555566666665
No 47
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=47.73 E-value=1.1e+02 Score=24.64 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHH-HHhhhCCCCChhhhhhh
Q 008136 127 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELI-LRLLDNDELSPEQVNDV 205 (576)
Q Consensus 127 eK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~l-LRlLdNd~Ldpe~V~dI 205 (576)
.-.++..||.++=..|..+- ..-.+++.+... -.+...++.-|..|+-.|..+-.. -++++.+...+++...|
T Consensus 10 ~l~el~~WL~e~e~~l~~~~-~~~~d~~~v~~~-----l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i 83 (118)
T 3uul_A 10 ALEEVLTWLLSAEDTFQEQD-DISDDVEDVKEQ-----FATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEI 83 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTSC-CCCSSHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Confidence 44567777776655554321 111122221000 012335555566666666665333 35667777888877777
Q ss_pred hHHHHHHHH
Q 008136 206 KDLLEDYVE 214 (576)
Q Consensus 206 KEdIeyYVE 214 (576)
++.|+..-+
T Consensus 84 ~~~l~~l~~ 92 (118)
T 3uul_A 84 QEQMTLLNA 92 (118)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777665443
No 48
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=47.53 E-value=64 Score=26.67 Aligned_cols=56 Identities=14% Similarity=0.280 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhHHHHHhhhcccch--hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008136 47 DLKKEIKKLQRYRDQIKTWIQSSEI--KDKKVSASYEQALVDARKLIEREMERFKICE 102 (576)
Q Consensus 47 DLKKEIKKLQRlRDQIKtWlasneI--KDK~~~a~~~~~L~E~RKlIE~~MErFK~vE 102 (576)
.|-++|-+|..-...|-.=++..++ .|...++.....|.+....+|..|||+=.+|
T Consensus 26 ~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666677777776 4555456667788889999999999997765
No 49
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=47.29 E-value=99 Score=33.82 Aligned_cols=29 Identities=7% Similarity=0.282 Sum_probs=16.6
Q ss_pred cchhhhHHHHHHHH---------HHhHHhHHHHHHHhh
Q 008136 5 RKLQGEIDRVLKKV---------QEGVDVFDSIWNKVY 33 (576)
Q Consensus 5 RKLQ~EIDr~LKKV---------~EGVe~Fd~iyeKl~ 33 (576)
++|..+|+..+..+ .-|-..++.+|+++.
T Consensus 382 ~~L~~~i~~~~~~~~~~N~~~s~~~C~~ll~~l~~~l~ 419 (592)
T 1f5n_A 382 KELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLE 419 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777766332 334555666666653
No 50
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=47.26 E-value=2.2e+02 Score=29.48 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=36.7
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHH----HHHhhhCCCC
Q 008136 123 PKEKAK-SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLEL----ILRLLDNDEL 197 (576)
Q Consensus 123 P~EkeK-~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~----lLRlLdNd~L 197 (576)
|+|..+ .+-.+.|+.-|.+|+..-+.++.+++... ...-+++..+...+-.+..|-. .+.-|....+
T Consensus 197 ~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~~~g~ 268 (373)
T 3hhm_B 197 EKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQA--------AEYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQKGV 268 (373)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHcCC
Confidence 445443 35567888888888888888888876531 1233666666666666655544 2333444455
Q ss_pred Chhhhhh
Q 008136 198 SPEQVND 204 (576)
Q Consensus 198 dpe~V~d 204 (576)
.+++|+.
T Consensus 269 ~~~~i~~ 275 (373)
T 3hhm_B 269 RQKKLNE 275 (373)
T ss_dssp -------
T ss_pred CHHHHHH
Confidence 5555544
No 51
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=46.96 E-value=46 Score=28.50 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHH
Q 008136 135 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 214 (576)
Q Consensus 135 L~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE 214 (576)
|..-|..|+.|++.++.++..+..+-+...+ + .-.+-||.+| -+-++|||--...+-
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~------~---~~~~~hI~~L--------------h~YNeiKD~gq~L~g 62 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALAKLKNRDA------K---QTVQKHIDLL--------------HTYNEIRDIALGMIG 62 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSSCH------H---HHHHHHHHHH--------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCH------H---HHHHHHHHHH--------------HHHhHHHHHHHHHHH
Confidence 5667888888888888888777432221111 1 1234566666 344666665555443
Q ss_pred hCCC-CccccCCccccccCCCCCCc
Q 008136 215 RNQD-DFEEFSDVDELYHLLPLDKV 238 (576)
Q Consensus 215 ~nqd-DF~E~~dde~iYd~L~Lde~ 238 (576)
.-.+ -.. ..-++|.+||++..
T Consensus 63 ~iA~~rgv---~~~~v~~e~g~~~~ 84 (85)
T 3viq_B 63 KVAEHEKC---TSVELFDRFGVNGS 84 (85)
T ss_dssp HHHHHTTS---CGGGGHHHHTCCTT
T ss_pred HHHHHcCC---cHHHHHHHhCCCCC
Confidence 2222 112 23578888888753
No 52
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=46.72 E-value=2.8e+02 Score=29.89 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=18.6
Q ss_pred HHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHH
Q 008136 18 VQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR 57 (576)
Q Consensus 18 V~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQR 57 (576)
|..-|+.++.+-+.|.+.++. =..|...|+-.++++|+
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~--~~~~i~~Iq~slk~~Q~ 135 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTT--MYQYVNMIDNKLVKTQK 135 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHhhcccc
Confidence 445555555555555333221 12344566666666664
No 53
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=45.43 E-value=2.5e+02 Score=28.16 Aligned_cols=43 Identities=14% Similarity=0.349 Sum_probs=27.2
Q ss_pred chhHHHHHHHHHHHHHHHHH--------HHHHHhhhCCCCChhhhhhhhHHHHHHHHhC
Q 008136 166 PRLTHLETSITRHKAHIMKL--------ELILRLLDNDELSPEQVNDVKDLLEDYVERN 216 (576)
Q Consensus 166 ~rl~eLe~~ieRhk~HI~kL--------E~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~n 216 (576)
.||..|...+-++.-|+.-. |.++..|.+ ++++ .||+.|++..
T Consensus 217 eRL~~Lkd~L~~y~~~~sd~~~~~~~~~E~~~~~ll~--~dve------~eI~~Fa~~~ 267 (287)
T 3g9g_A 217 NRLDTLKNCMLRFQTSFSDYLLNTTKECETVMTKFLA--FEPQ------SEIDRFAKDA 267 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHH------HHHHHHHHHH
Confidence 37888888888877776543 556666664 5554 4566666553
No 54
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=45.23 E-value=1.9e+02 Score=27.98 Aligned_cols=27 Identities=4% Similarity=-0.021 Sum_probs=17.4
Q ss_pred HHHHHhhhCCCCChhhhhhhhHHHHHHHHhC
Q 008136 186 ELILRLLDNDELSPEQVNDVKDLLEDYVERN 216 (576)
Q Consensus 186 E~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~n 216 (576)
|.|...+++ ++|+ .||+..|+.|--..
T Consensus 266 ~~l~~~i~~--id~~--~Di~~fi~~~~tg~ 292 (337)
T 2x3v_A 266 RELEQAIRG--ADAQ--EDLRWFRSTSGPGM 292 (337)
T ss_dssp HHHHHHHHH--CCHH--HHHHHHHHHHSTTS
T ss_pred HHHHHHHHH--cChH--HHHHHHHHHhCCCC
Confidence 344445544 6665 78888899985443
No 55
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=44.97 E-value=19 Score=37.22 Aligned_cols=36 Identities=33% Similarity=0.706 Sum_probs=17.2
Q ss_pred hHHHHHHHHHH-----------------HHHHHHHhHHHHHhhhcccchhhhh
Q 008136 40 QKEKFEADLKK-----------------EIKKLQRYRDQIKTWIQSSEIKDKK 75 (576)
Q Consensus 40 QKEKlE~DLKK-----------------EIKKLQRlRDQIKtWlasneIKDK~ 75 (576)
.|+|||.+|+. ||=.|.|.|||...|+...-+++++
T Consensus 220 ~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~~~g~~~~~ 272 (373)
T 3hhm_B 220 SRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQKGVRQKK 272 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 47888888876 4555889999999999998888766
No 56
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=43.97 E-value=20 Score=31.90 Aligned_cols=31 Identities=35% Similarity=0.587 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHH
Q 008136 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKF 44 (576)
Q Consensus 10 EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKl 44 (576)
|=|..||.|+|.|..|.++|.++ ..+|||.+
T Consensus 70 en~~~L~QIQ~ei~s~rd~hkR~----~E~QkEQ~ 100 (115)
T 1ezj_A 70 ENKQLLKQIQESVESFRDIYKRF----SEYQKEQN 100 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH----HHhHHHHH
Confidence 67889999999999999999999 66888864
No 57
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=43.73 E-value=1.1e+02 Score=27.30 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
|+...|+.+||..-|+.|+.+++.++.+++.+
T Consensus 93 E~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l 124 (151)
T 2zdi_C 93 ERSIDEAISFLEKRLKEYDEAIKKTQGALAEL 124 (151)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999888886655
No 58
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=43.64 E-value=1.4e+02 Score=28.38 Aligned_cols=83 Identities=16% Similarity=0.246 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhH--------------------------HHHHHHHHHHHHHHHHh
Q 008136 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQK--------------------------EKFEADLKKEIKKLQRY 58 (576)
Q Consensus 5 RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQK--------------------------EKlE~DLKKEIKKLQRl 58 (576)
.|+|+++..+++.+...-..|+..+.....+....++ ++-+.+.+..|.+++++
T Consensus 124 ~k~~k~~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~ 203 (290)
T 3i2w_A 124 KKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITKY 203 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC--------------------CTTSSTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008136 59 RDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKIC 101 (576)
Q Consensus 59 RDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~v 101 (576)
|+..-.=+.. .+.....+.|.++..||.+
T Consensus 204 ~~~~~~~~p~--------------~~~~~Q~lee~Ri~~lk~~ 232 (290)
T 3i2w_A 204 NSVYIEDMTS--------------VFEKCQTFEKTRLQFFKEI 232 (290)
T ss_dssp HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
No 59
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=43.57 E-value=1.4e+02 Score=28.13 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008136 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 194 (576)
Q Consensus 131 ~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdN 194 (576)
+.+..-.+++.|+.++|.+|.++-. ... ..-.++-.++..+-+.+..+.-+..+|..|.+
T Consensus 181 ivd~y~~~l~~i~~~id~lE~~l~~---~~~-~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~ 240 (266)
T 2hn1_A 181 VVDSYFEALLKISDEIEVLEDEVVS---GDS-TLIGKIHSLKREILAFRNAVWPLRDVLSFFTR 240 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---TTC-CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---CcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455566666666666666421 122 33467899999999988888888777766654
No 60
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=43.41 E-value=15 Score=28.33 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=17.4
Q ss_pred hhhhhhhhHHHHHHHHhCCCCccc
Q 008136 199 PEQVNDVKDLLEDYVERNQDDFEE 222 (576)
Q Consensus 199 pe~V~dIKEdIeyYVE~nqdDF~E 222 (576)
.+.+++|-|+|+..+|.|.++|+-
T Consensus 13 ~~~~D~lLDeId~vLE~NAeeFV~ 36 (44)
T 3m91_B 13 TEETDDLLDEIDDVLEENAEDFVR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHTC-----
T ss_pred hhhHHHHHHHHHHHHHHhHHHHHH
Confidence 468899999999999999998873
No 61
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=43.21 E-value=13 Score=29.26 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhHHHHHhhhcc
Q 008136 47 DLKKEIKKLQRYRDQIKTWIQS 68 (576)
Q Consensus 47 DLKKEIKKLQRlRDQIKtWlas 68 (576)
-|.|||.+|||.+++=-.-+..
T Consensus 10 RLErEIE~Lqrqke~~~~~L~e 31 (51)
T 2lw9_A 10 RLEKEIEDLQRMKEQQELSLTE 31 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 4889999999999987666554
No 62
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=42.77 E-value=66 Score=29.98 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 008136 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 195 (576)
Q Consensus 130 E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd 195 (576)
.+.+..-.+++.|..++|.+|.+ ...-.++-.|+..+-+.+.++.-+..+|..|..+
T Consensus 144 ~ivd~y~~~l~~l~~~id~lE~~---------~~~~~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~ 200 (252)
T 3ck6_A 144 GLNGKIDLYLDTIEETLNEFDVN---------DESTYNHIAAQKALISIKRFIRPQQYAIRDLIES 200 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTT---------CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC---------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444555556666666665544 1123568899999999999999998888776653
No 63
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=42.12 E-value=77 Score=32.42 Aligned_cols=29 Identities=10% Similarity=0.226 Sum_probs=19.1
Q ss_pred cchhhhHHHHH-HHHHHhHHhHHHHHHHhh
Q 008136 5 RKLQGEIDRVL-KKVQEGVDVFDSIWNKVY 33 (576)
Q Consensus 5 RKLQ~EIDr~L-KKV~EGVe~Fd~iyeKl~ 33 (576)
+|||+++.+++ +.|.-.-..|+..+..+.
T Consensus 122 ~klqk~~~k~~~~~lekaKk~Y~~~cke~e 151 (406)
T 4dyl_A 122 QQLQQELTKTHSQDIEKLKSQYRALARDSA 151 (406)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777 677666666666655444
No 64
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=42.06 E-value=4.9e+02 Score=34.42 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=9.5
Q ss_pred HHHHHHHHhHhhHHHHhhhh
Q 008136 137 NLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 137 ~~IdeL~~QiE~~EaEiE~L 156 (576)
..|.+|+..++.++++++.+
T Consensus 2035 ~~L~~le~~l~~L~~~~~~~ 2054 (3245)
T 3vkg_A 2035 ATITALEKSIATYKEEYATL 2054 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555443
No 65
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=41.89 E-value=3e+02 Score=28.07 Aligned_cols=56 Identities=9% Similarity=-0.013 Sum_probs=25.6
Q ss_pred hHHHHHHHHhCCCCccccCCccccccCCCCCCccccccccccCCCCCCCCCCchhhhhhhhhc
Q 008136 206 KDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGAPALSLKASLAAS 268 (576)
Q Consensus 206 KEdIeyYVE~nqdDF~E~~dde~iYd~L~Lde~e~~~~~~~~~p~~~~~~~~~~~~k~~~~~~ 268 (576)
..|+..||+.|...|..- .+.-|+.-.+++.+ .+.+. .-.+.......|++.|..+
T Consensus 259 ~~D~~~Fi~~~~tg~~~P--~~~~Fep~~~~d~~---~l~~~--~~~~~e~~~~~lq~~L~~~ 314 (406)
T 4dyl_A 259 EAEYQGFLRQYGSAPDVP--PCVTFDESLLEEGE---PLEPG--ELQLNELTVESVQHTLTSV 314 (406)
T ss_dssp GGTTHHHHHHHCCCCCCC--CCCCCCTTCCC---------TT--CCCCSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCC--CCCccccCcccccc---cCCcc--chhhhHHHHHHHHHHHHHH
Confidence 467778888776544321 12234444444332 11111 1233335566777776665
No 66
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=41.86 E-value=1.3e+02 Score=27.21 Aligned_cols=49 Identities=16% Similarity=0.369 Sum_probs=28.3
Q ss_pred HHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccc
Q 008136 19 QEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSE 70 (576)
Q Consensus 19 ~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasne 70 (576)
.+-+...+..|+.|... ...-+.+|+.-| ++.+..|-=+++..|+..-+
T Consensus 91 ~~~l~~L~~~w~~L~~~-~~~R~~~L~q~l--~l~~F~~d~~~~~~WL~~~e 139 (218)
T 3fb2_A 91 KQKLDILDQERADLEKA-WVQRRMMLDQCL--ELQLFHRDCEQAENWMAARE 139 (218)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555433 222367777666 35555566788899988643
No 67
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=41.86 E-value=53 Score=34.85 Aligned_cols=84 Identities=18% Similarity=0.328 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHhhhhhc-----------------ccCCCCC--------------chhHHHHHHHHH
Q 008136 129 SETRDWLNNLVSELESQIDSFEAELEGLTV-----------------KKGKTRP--------------PRLTHLETSITR 177 (576)
Q Consensus 129 ~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~-----------------KK~Kk~~--------------~rl~eLe~~ieR 177 (576)
+++.+||...-......|+.||..++.++. ++-|..+ +.+..++..|.+
T Consensus 23 Cgl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~ 102 (411)
T 3ghg_C 23 CGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILT 102 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777766666666666666666621 1112111 234556777888
Q ss_pred HHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHHhCCC
Q 008136 178 HKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD 218 (576)
Q Consensus 178 hk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~nqd 218 (576)
|..-|..|+.++...+ ..|..|++.|....+...+
T Consensus 103 ~~~~i~~l~~~~~~~~------~~i~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 103 HDSSIRYLQEIYNSNN------QKIVNLKEKVAQLEAQCQE 137 (411)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHTTSCS
T ss_pred hHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhcc
Confidence 8888888888877664 5888899999888776554
No 68
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=41.39 E-value=55 Score=29.26 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=28.3
Q ss_pred HHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008136 137 NLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELI 188 (576)
Q Consensus 137 ~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~l 188 (576)
..|+.|.+.|+.+-+++|.+ +.+-+..+...+++|..||.=
T Consensus 15 ~~Ie~Lkreie~lk~ele~l-----------~~E~q~~v~ql~~~i~~Le~e 55 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENM-----------KTESQRVVLQLKGHVSELEAD 55 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888887 345556666666666666543
No 69
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=39.75 E-value=53 Score=26.09 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=27.6
Q ss_pred HHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 008136 139 VSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLEL 187 (576)
Q Consensus 139 IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~ 187 (576)
-|+|-+|+|.+..| -.+|..-++.+-.|+.|||.
T Consensus 5 YdQL~~QVe~Lk~E---------------NshLrrEL~dNS~~lskLE~ 38 (54)
T 1deb_A 5 YDQLLKQVEALKME---------------NSNLRQELEDNSNHLTKLET 38 (54)
T ss_dssp HHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------hhHHHHHHHhhHHHHHHHHh
Confidence 47888899988877 23678888889999999985
No 70
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=39.68 E-value=49 Score=30.42 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=53.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhc------ccCCCCCch--------hHHHHHHHHHHHHHHHHHH
Q 008136 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV------KKGKTRPPR--------LTHLETSITRHKAHIMKLE 186 (576)
Q Consensus 121 ~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~------KK~Kk~~~r--------l~eLe~~ieRhk~HI~kLE 186 (576)
.||+|.- .++..=|...+.+|.+++..+|.+-.++.. |+|.....| .......+-+.++|+..++
T Consensus 6 ~~p~e~l-r~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~ 84 (179)
T 2gd5_A 6 KPPKELV-NEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVL 84 (179)
T ss_dssp --CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4776554 345666888899999999999888766621 222211111 1111222223344444333
Q ss_pred H----HHH---hhh------------CCCCChhhhhhhhHHHHHHHHhC
Q 008136 187 L----ILR---LLD------------NDELSPEQVNDVKDLLEDYVERN 216 (576)
Q Consensus 187 ~----lLR---lLd------------Nd~Ldpe~V~dIKEdIeyYVE~n 216 (576)
. +.. ..+ |..++.++|..+-++++.-++.-
T Consensus 85 ~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~ 133 (179)
T 2gd5_A 85 MGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKA 133 (179)
T ss_dssp HHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3 221 211 67888899998888887766553
No 71
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=39.64 E-value=30 Score=38.04 Aligned_cols=99 Identities=11% Similarity=0.086 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhh
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR---PPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQ 201 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~---~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~ 201 (576)
++-+.++..|.+.+++.|+..+.... +.+.. +.-=. ..++..|+..|+.+.-+|..|+.+|+-+- .+
T Consensus 77 sKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNt---ynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~------~k 146 (562)
T 3ghg_A 77 QKNNKDSHSLTTNIMEILRGDFSSAN-NRDNT---YNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQL------VD 146 (562)
T ss_dssp HHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHH---HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
T ss_pred HhhchhHHHHHHHHHHHHHHHHHhhh-ccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 44555666666666666654433322 21110 00000 12467777777777788888887777653 56
Q ss_pred hhhhhHHHHHHHHhCCC---CccccCCccccccCC
Q 008136 202 VNDVKDLLEDYVERNQD---DFEEFSDVDELYHLL 233 (576)
Q Consensus 202 V~dIKEdIeyYVE~nqd---DF~E~~dde~iYd~L 233 (576)
|..|.-||+-=|+.+.. -..+|.=|-.-|+++
T Consensus 147 IQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~ 181 (562)
T 3ghg_A 147 MKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQ 181 (562)
T ss_dssp HHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccchheeecchHHHHHH
Confidence 77788888888877654 222333334456543
No 72
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=39.01 E-value=64 Score=27.47 Aligned_cols=20 Identities=40% Similarity=0.544 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhHHHHHhhh
Q 008136 47 DLKKEIKKLQRYRDQIKTWI 66 (576)
Q Consensus 47 DLKKEIKKLQRlRDQIKtWl 66 (576)
+||||||||+|.=-|.|.=+
T Consensus 19 eLkkevkKL~~~A~q~kmdL 38 (81)
T 3csx_A 19 DLKKKVRKLNSKAGQMKMDL 38 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58999999999988888633
No 73
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=37.27 E-value=84 Score=28.05 Aligned_cols=50 Identities=26% Similarity=0.391 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhH------HHHHHHHHHHHHHHHHHHHhHhhHH
Q 008136 80 YEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKE------KAKSETRDWLNNLVSELESQIDSFE 150 (576)
Q Consensus 80 ~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~E------keK~E~~~WL~~~IdeL~~QiE~~E 150 (576)
.+..|..+|++++.+-+.| | .||.+ ..|..+..-|.+-|.+|++|+-..-
T Consensus 47 ~E~QL~iArQKLkdAe~~~---E------------------~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 47 HEQQLVTARQKLKDAEKAV---E------------------VDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH---H------------------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh---c------------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4458888898888877666 1 16665 3566777888888888888875443
No 74
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=36.75 E-value=50 Score=31.95 Aligned_cols=49 Identities=31% Similarity=0.281 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhcccchh-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008136 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIK-DKKVSASYEQALVDARKLIEREMERFKICEKETKTKA 109 (576)
Q Consensus 42 EKlE~DLKKEIKKLQRlRDQIKtWlasneIK-DK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKa 109 (576)
++=+.-+.+|++.|+|+. .+.|. .|. -.+-.|.-| ++.| ...|+.|||.
T Consensus 194 ~~g~~~~~~E~~Rl~~~l--------~~~~~~~k~-------d~~~~r~NI---L~~F-~~~~~~~~~~ 243 (248)
T 2c0g_A 194 EVGYDFLEEETKRLLRLK--------AGKVTEAKK-------EELLRKLNI---LEVF-RVHKVTKTAP 243 (248)
T ss_dssp HHCTHHHHHHHHHHHHHH--------TSSCCHHHH-------HHHHHHHHH---HHHT-CCSSCCSCC-
T ss_pred hhhhHHHHHHHHHHHHHH--------hcCCCHHHH-------HHHHHHHHH---HHHH-HhccCccccc
Confidence 344556899999999987 22344 233 445555666 6788 4666776653
No 75
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=36.52 E-value=30 Score=29.66 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHhh
Q 008136 39 NQKEKFEADLKKEIKKLQRYRDQIKTW 65 (576)
Q Consensus 39 nQKEKlE~DLKKEIKKLQRlRDQIKtW 65 (576)
+-|+|++.+|.+-++.|.+|-++|..+
T Consensus 44 ~LKkkl~~el~~h~~ei~~le~~i~rh 70 (84)
T 1gmj_A 44 ALKKHKENEISHHAKEIERLQKEIERH 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777777777777777777777554
No 76
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=36.18 E-value=2.7e+02 Score=25.86 Aligned_cols=104 Identities=19% Similarity=0.330 Sum_probs=63.6
Q ss_pred cccchhhhHHHHHHHHHHhHHhHHHHHHHhhcCC---ChhhHHHHHH---HHHHHHHHHHHhHHHHH-----hhhcccc-
Q 008136 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTD---NANQKEKFEA---DLKKEIKKLQRYRDQIK-----TWIQSSE- 70 (576)
Q Consensus 3 a~RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~---n~nQKEKlE~---DLKKEIKKLQRlRDQIK-----tWlasne- 70 (576)
.+.||-.+.|+++.||..-=++-+++-.-+..-. ...|=+-+-. .+++||++|+.|=+.+| .|-.-=+
T Consensus 15 ~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~ 94 (141)
T 3okq_A 15 SQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDK 94 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Confidence 3578999999999999988888887766655332 2333333333 46677777777766664 4532110
Q ss_pred -hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008136 71 -IKDKKVSASYEQALVDARKLIEREMERFKICEKETK 106 (576)
Q Consensus 71 -IKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~K 106 (576)
+..-...--.+.-+.|.+.=++...|.|.-||+-++
T Consensus 95 VceEQqfl~~QedL~~DL~eDL~ka~etf~lVeq~~~ 131 (141)
T 3okq_A 95 VCEEQQFLTLQEELILDLKEDLGKALETFDLIKLCCE 131 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111123344566677777788888888887664
No 77
>2d4u_A Methyl-accepting chemotaxis protein I; helix-turn-helix, signaling protein; 1.95A {Escherichia coli} PDB: 3atp_A
Probab=35.85 E-value=2e+02 Score=24.23 Aligned_cols=62 Identities=6% Similarity=0.169 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHhHHhHHHHHHHhhcCCChhh-HHHHHHHHHHHHHHHHHhHHHHHhhhcccch
Q 008136 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ-KEKFEADLKKEIKKLQRYRDQIKTWIQSSEI 71 (576)
Q Consensus 10 EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQ-KEKlE~DLKKEIKKLQRlRDQIKtWlasneI 71 (576)
+++..++.+.+-+...+..|+++........ -..+-.+|++-.+.+..--+.+-..+..+++
T Consensus 66 ~~~~~~~~a~~~l~~~~~~~~~y~~~~~~~~~e~~l~~~l~~~~~~~~~~l~~~~~~l~~g~~ 128 (176)
T 2d4u_A 66 TVAELMESASISLKQAEKNWADYEALPRDPRQSTAAAAEIKRNYDIYHNALAELIQLLGAGKI 128 (176)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 4778888899999999999999887754332 2233444444444433333333334444443
No 78
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=35.71 E-value=72 Score=27.53 Aligned_cols=69 Identities=22% Similarity=0.290 Sum_probs=50.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhc-c--------cC--CCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008136 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV-K--------KG--KTRPPRLTHLETSITRHKAHIMKLELIL 189 (576)
Q Consensus 121 ~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~-K--------K~--Kk~~~rl~eLe~~ieRhk~HI~kLE~lL 189 (576)
+.|.++.| =|...|++|+++|+....+.|.|.. + -| +.-...|.++...|++.+.-+.|++..|
T Consensus 11 LPpeqRkk-----kL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L 85 (98)
T 2ke4_A 11 LPPEQQRK-----RLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWL 85 (98)
T ss_dssp SCHHHHHH-----HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45644443 3688889999999888888888731 1 11 1123568899999999999999999998
Q ss_pred HhhhC
Q 008136 190 RLLDN 194 (576)
Q Consensus 190 RlLdN 194 (576)
.-|++
T Consensus 86 ~e~e~ 90 (98)
T 2ke4_A 86 AEAES 90 (98)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88753
No 79
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=35.59 E-value=46 Score=30.62 Aligned_cols=16 Identities=13% Similarity=0.345 Sum_probs=10.1
Q ss_pred hhhHHHHHHHHHHHHH
Q 008136 77 SASYEQALVDARKLIE 92 (576)
Q Consensus 77 ~a~~~~~L~E~RKlIE 92 (576)
+..|...|+..||.++
T Consensus 56 aki~Ak~lvr~rk~~~ 71 (179)
T 2gd5_A 56 CIVLAKEMIRSRKAVS 71 (179)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3467777777776543
No 80
>2nt8_A Cobalamin adenosyltransferase; ATP binding; HET: ATP; 1.68A {Lactobacillus reuteri}
Probab=34.86 E-value=75 Score=31.08 Aligned_cols=112 Identities=13% Similarity=0.083 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhh--c-cccccccccCCCCCC-ChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhH
Q 008136 94 EMERFKICEKET--K-TKAFSKEGLGQQPKT-DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLT 169 (576)
Q Consensus 94 ~MErFK~vEKE~--K-TKafSKEGL~~~~K~-DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~ 169 (576)
-|+-|+.+++-| + +|-|.|-|=...+.+ +-.--.|.+.+=..--+||||+..|-...+.++. ..+.+.
T Consensus 20 ~~~~~~~~~~mm~~~m~kIYTktGD~G~T~L~~G~RV~Kdd~RIeayGtvDELnS~IGla~~~~~~--------~~~~~~ 91 (223)
T 2nt8_A 20 HMASMTGGQQMGRDRSVKIYTKNGDKGQTRIIGKQILYKNDPRVAAYGEVDELNSWVGYTKSLINS--------HTQVLS 91 (223)
T ss_dssp -----------------CCCCCTTTTSEEECSSSCEEETTSHHHHHHHHHHHHHHHHHHHHTTCCG--------GGGGGH
T ss_pred eeeeeecchhhhHHhcccccccCCCCCeecCCCCeeccCCChhheeeehHHHHHHHHHHHHHHhcc--------ccHHHH
Confidence 588899999844 3 499999873211111 1111122222223366889999998766543210 012233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhC--C----CCChhhhhhhhHHHHHHHHhC
Q 008136 170 HLETSITRHKAHIMKLELILRLLDN--D----ELSPEQVNDVKDLLEDYVERN 216 (576)
Q Consensus 170 eLe~~ieRhk~HI~kLE~lLRlLdN--d----~Ldpe~V~dIKEdIeyYVE~n 216 (576)
+.-..|++.=|++ =--|..-.. . .++.++|..|++.|+.|-+.-
T Consensus 92 ~~L~~IQ~~Lfdl---ga~Latp~~~~~~~~~~i~~~~v~~LE~~Id~~~~~l 141 (223)
T 2nt8_A 92 NELEEIQQLLFDC---GHDLATPADDERHSFKFKQEQPTVWLEEKIDNYTQVV 141 (223)
T ss_dssp HHHHHHHHHHHHH---HHHHTSCTTCSSCCCCCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH---HHHHcCCcccccccccCCCHHHHHHHHHHHHHHHhhC
Confidence 3333344444443 222222111 1 477899999999998887764
No 81
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=34.85 E-value=1.2e+02 Score=29.97 Aligned_cols=26 Identities=4% Similarity=-0.054 Sum_probs=16.7
Q ss_pred HHHHHhhhCCCCChhhhhhhhHHHHHHHHh
Q 008136 186 ELILRLLDNDELSPEQVNDVKDLLEDYVER 215 (576)
Q Consensus 186 E~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~ 215 (576)
|.|...+++ ++|+ .||+..|+.|--.
T Consensus 275 ~~l~~~i~~--id~~--~Di~~fi~~~~tg 300 (350)
T 3aco_A 275 HDLEQSIRA--ADAV--EDLRWFRANHGPG 300 (350)
T ss_dssp HHHHHHHHT--CCHH--HHHHHHHHHTSTT
T ss_pred HHHHHHHHh--CCHH--HHHHHHHHHcCCC
Confidence 344455554 6665 6788888877654
No 82
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=34.38 E-value=2.4e+02 Score=25.21 Aligned_cols=26 Identities=4% Similarity=0.228 Sum_probs=17.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHh
Q 008136 122 DPKEKAKSETRDWLNNLVSELESQIDSFEAEL 153 (576)
Q Consensus 122 DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEi 153 (576)
++.|-.+. +..|.+++.||..++.++
T Consensus 103 ~~~Ei~~R------r~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 103 PAGDLQER------KVFVERMREAVQEMKDHM 128 (130)
T ss_dssp CHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHH------HHHHHHHHHHHHHHHHHh
Confidence 55565554 456677788888877765
No 83
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=33.98 E-value=75 Score=28.18 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhHHHHHhhhc
Q 008136 46 ADLKKEIKKLQRYRDQIKTWIQ 67 (576)
Q Consensus 46 ~DLKKEIKKLQRlRDQIKtWla 67 (576)
..|..+|+.||+.++.|...+.
T Consensus 91 ~~l~~~i~~L~~~~~~L~~~i~ 112 (142)
T 3gp4_A 91 IELKNRIDVMQEALDRLDFKID 112 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777776665443
No 84
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=33.60 E-value=1.9e+02 Score=28.47 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHH---HHHHHHHH-H---hhhCC----CC-ChhhhhhhhHHHHHHHHh
Q 008136 169 THLETSITRHKAH---IMKLELIL-R---LLDND----EL-SPEQVNDVKDLLEDYVER 215 (576)
Q Consensus 169 ~eLe~~ieRhk~H---I~kLE~lL-R---lLdNd----~L-dpe~V~dIKEdIeyYVE~ 215 (576)
.+|+..+.+.+-+ +..|+... . ..--| .| ..+.+..+++.|..+.+.
T Consensus 116 ~~L~~~~~~l~~~~~~l~~L~p~~~~ld~~~~~g~~~g~ip~~~~~~~~~~~l~~~~~~ 174 (357)
T 3rrk_A 116 AALEEEIQTIELFGKAAEKLAALAHGLDESPRLGVIPFLVAKPEELEAVRKALQEALAD 174 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTTCTTEEEEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHHHHHhhhhccCCccceeeeeeEEecChhhHHHHHHHHHHhcCC
Confidence 3445555555555 55554433 1 11123 67 667777787777766544
No 85
>2lig_A Aspartate receptor; chemotaxis; HET: PHN; 2.00A {Salmonella typhimurium} SCOP: a.24.2.1 PDB: 1lih_A*
Probab=33.35 E-value=1.9e+02 Score=23.28 Aligned_cols=15 Identities=20% Similarity=0.087 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHh
Q 008136 131 TRDWLNNLVSELESQ 145 (576)
Q Consensus 131 ~~~WL~~~IdeL~~Q 145 (576)
...-+...++-...+
T Consensus 137 ~~~~~~~l~~~~~~~ 151 (164)
T 2lig_A 137 LGEALGNYARVSENL 151 (164)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344333333
No 86
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=33.06 E-value=1.8e+02 Score=24.84 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHH-HHHHHHHH
Q 008136 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIER-EMERFKIC 101 (576)
Q Consensus 42 EKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~-~MErFK~v 101 (576)
+-||-.|..|.|==|=.---|++..+. -.|||+..+..-+.|.|.+..||- +|.-.|+.
T Consensus 11 ~~L~kqL~IElkVK~GAENmi~~y~~g-~~~drKlLaeAQqmL~DSk~KIe~lRmqI~k~~ 70 (81)
T 1urf_A 11 AGLEKQLAIELKVKQGAENMIQTYSNG-STKDRKLLLTAQQMLQDSKTKIDIIRMQLRRAL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777778888555 479999889999999999999994 77666543
No 87
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=32.72 E-value=3.2e+02 Score=25.80 Aligned_cols=114 Identities=23% Similarity=0.283 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc-ccccccCCCCC-CChhHHHH-HHHHHHHHHHHHHHHHhHhhHHHHhhhhhccc
Q 008136 84 LVDARKLIEREMERFKICEKETKTKA-FSKEGLGQQPK-TDPKEKAK-SETRDWLNNLVSELESQIDSFEAELEGLTVKK 160 (576)
Q Consensus 84 L~E~RKlIE~~MErFK~vEKE~KTKa-fSKEGL~~~~K-~DP~EkeK-~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK 160 (576)
+.-.|..||.=-|--|.+|...+|-. ||+|=+..-.+ -.|+|.++ .+-.+.|+.-+++|+..-+.++.+++...
T Consensus 47 iq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~--- 123 (170)
T 3l4q_C 47 LQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQA--- 123 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 33444555555556666666665543 55544432111 13444443 36677888888888888888887776541
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHH----HHHHHhhhCCCCChhhhhhh
Q 008136 161 GKTRPPRLTHLETSITRHKAHIMKL----ELILRLLDNDELSPEQVNDV 205 (576)
Q Consensus 161 ~Kk~~~rl~eLe~~ieRhk~HI~kL----E~lLRlLdNd~Ldpe~V~dI 205 (576)
...-+++..+...+-.+..| ...+.-|..-.|..+.|+++
T Consensus 124 -----~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~Gv~q~~in~~ 167 (170)
T 3l4q_C 124 -----SDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGARQKKINEW 167 (170)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred -----HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCHHHHHhh
Confidence 11225555555555555555 23344455556777777654
No 88
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=32.24 E-value=3.4e+02 Score=25.94 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhccc--chhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008136 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSS--EIKDKKVSASYEQALVDARKLIEREMERFK 99 (576)
Q Consensus 41 KEKlE~DLKKEIKKLQRlRDQIKtWlasn--eIKDK~~~a~~~~~L~E~RKlIE~~MErFK 99 (576)
+++|.-+...--.+|....+.++.=+..+ |++.+= ++| +.+.|..++..||.++
T Consensus 61 ~~~l~p~~ee~~~~l~~~~~~lr~~l~kd~ee~r~~l--~Py---~~el~~~~~~~~eelr 116 (243)
T 2a01_A 61 REQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKV--QPY---LDDFQKKWQEEMELYR 116 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSSTTH--HHH---HHHHHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHhhHHHHH
Confidence 44444444333445555555555433332 455432 333 3466777777777775
No 89
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=32.06 E-value=5.6e+02 Score=28.37 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=25.9
Q ss_pred cchhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHH
Q 008136 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ 56 (576)
Q Consensus 5 RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQ 56 (576)
|..-++++.-+|++..--|.|+--|.-+++-.. .+-...+..|++|...||
T Consensus 15 ~~~~q~~e~~~k~Le~~Qe~f~~~y~~~~~~~~-~~~~~~~~~~~~~~~~l~ 65 (575)
T 1bf5_A 15 KDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREH-ETNGVAKSDQKQEQLLLK 65 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-hhccccHHHHHHHHHHHH
Confidence 445577888888888888888888877764422 222344445555554444
No 90
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=32.03 E-value=2.1e+02 Score=27.18 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHH---HHHHHHHHHhH---HHHHhhhcccchhhhhhhhhHH
Q 008136 8 QGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADL---KKEIKKLQRYR---DQIKTWIQSSEIKDKKVSASYE 81 (576)
Q Consensus 8 Q~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DL---KKEIKKLQRlR---DQIKtWlasneIKDK~~~a~~~ 81 (576)
-..+..+.++|.+....|+.-.++- -...=+.-++.|+ .|.+|||.+.| |..|.=+.. ....-.....
T Consensus 114 L~~~g~a~~~la~~~~~~~~~i~~~---~l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~~k---~~eeEle~A~ 187 (256)
T 1zww_A 114 LGEVGEAMRELSEVKDSLDMEVKQN---FIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGK---IPDEELRQAL 187 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---THHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTTT---SCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHH
Confidence 4567788888888888888755543 2223233345454 67788887776 343332211 0111134455
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008136 82 QALVDARKLIEREMERFKICE 102 (576)
Q Consensus 82 ~~L~E~RKlIE~~MErFK~vE 102 (576)
..+.+++......|..|-.-|
T Consensus 188 ~~fe~~~e~~~~~m~~l~~~e 208 (256)
T 1zww_A 188 EKFDESKEIAESSMFNLLEMD 208 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhCc
Confidence 677778888888888775443
No 91
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=31.67 E-value=3.3e+02 Score=25.61 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=18.9
Q ss_pred HhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcc
Q 008136 23 DVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS 68 (576)
Q Consensus 23 e~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlas 68 (576)
+..+.-|+.+..... .-+.+|+.-+ ++.+..+-=+.+..|+..
T Consensus 89 ~~l~~~W~~L~~~~~-~R~~~L~~a~--~~~~f~~~~~e~~~Wl~~ 131 (323)
T 3edv_A 89 DGLNEAWADLLELID-TRTQILAASY--ELHKFYHDAKEIFGRIQD 131 (323)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 334444444433321 1234444433 333444444566677663
No 92
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=31.26 E-value=1.4e+02 Score=25.00 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 008136 168 LTHLETSITRHKAHIMKLELILRL 191 (576)
Q Consensus 168 l~eLe~~ieRhk~HI~kLE~lLRl 191 (576)
+.++.....+.+.-|.+||..++-
T Consensus 27 LaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 27 LAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666677777788888888886554
No 93
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=30.60 E-value=2e+02 Score=30.99 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHh-------------------HHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008136 42 EKFEADLKKEIKKLQRY-------------------RDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICE 102 (576)
Q Consensus 42 EKlE~DLKKEIKKLQRl-------------------RDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vE 102 (576)
+++...+.+||+++-+. |.||+.|-...--- +...|.-.-...++++...|+||-.+-
T Consensus 398 ~~~~~~~~~~i~~~~~~~~g~~~~~f~~~~~fe~lvk~qi~~l~~Pa~~~---v~~V~~~v~~~~~~~~~~~f~rfp~L~ 474 (608)
T 3szr_A 398 QEGHKILSRKIQKFENQAAAAELPGFVNYRTFETIVKQQIKALEEPAVDM---LHTVTDMVRLAFTDVSIKNFEEFFNLH 474 (608)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCSSSCSSCTHHHHHHHHHHHGGGHHHHHHH---HHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cccchhHHHHHHHHHHHccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34566777888877543 88999996553211 001122222333444555566665554
Q ss_pred hhhc
Q 008136 103 KETK 106 (576)
Q Consensus 103 KE~K 106 (576)
.+.+
T Consensus 475 ~~~~ 478 (608)
T 3szr_A 475 RTAK 478 (608)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 94
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=29.95 E-value=1.2e+02 Score=28.64 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=19.9
Q ss_pred HHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHH
Q 008136 53 KKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIER 93 (576)
Q Consensus 53 KKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~ 93 (576)
+++...-+.++.|+.++| +. .|..++.+.+++...
T Consensus 172 ~~i~~~l~~~~~wl~~~d---~~---~~~~~~~~L~~~~~~ 206 (227)
T 1u00_A 172 QVIDDAAAHLSEVAQGDD---VD---AIEQAIKNVDKQTQD 206 (227)
T ss_dssp HHHHHHHHHHHHHTTSSC---HH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC---HH---HHHHHHHHHHHHHHH
Confidence 334444477788998653 33 455555555555443
No 95
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=29.92 E-value=89 Score=26.74 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=8.9
Q ss_pred CChhhHHHHHHH
Q 008136 36 DNANQKEKFEAD 47 (576)
Q Consensus 36 ~n~nQKEKlE~D 47 (576)
.+..+|+.|+.-
T Consensus 37 ~~~~~K~~F~~~ 48 (86)
T 3r84_A 37 GNESVKPQFENH 48 (86)
T ss_dssp TCGGGHHHHHHH
T ss_pred CcHhHHHHHHHH
Confidence 467788888874
No 96
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=29.82 E-value=4.6e+02 Score=26.71 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHh-hhhhcccCCCCCchhHHHH
Q 008136 94 EMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAEL-EGLTVKKGKTRPPRLTHLE 172 (576)
Q Consensus 94 ~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEi-E~Ls~KK~Kk~~~rl~eLe 172 (576)
.+.+++++||.. ...|.+.. +..+++.=...+-..+...++.|+.+- .-+ +..=++-++
T Consensus 304 aL~k~~ea~kl~-----------~~~K~~~~--~~~e~~~r~e~IS~~~~~El~rF~~~Rv~Df-------k~~l~eyle 363 (386)
T 4akv_A 304 AFAKVKESQRMS-----------DEGRMVQD--EADGIRRRCRVVGFALQAEMNHFHQRRELDF-------KHMMQNYLR 363 (386)
T ss_dssp HHHHHHHHHHHH-----------HTTSSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHH-----------HhCCccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 455677776421 12344433 334455445555666666666666652 111 011144566
Q ss_pred HHHHHHHHHHHHHHHHHHhhhC
Q 008136 173 TSITRHKAHIMKLELILRLLDN 194 (576)
Q Consensus 173 ~~ieRhk~HI~kLE~lLRlLdN 194 (576)
..|.-|+-.+..||.++..+++
T Consensus 364 ~qi~~~~~~~~~le~~l~~f~~ 385 (386)
T 4akv_A 364 QQILFYQRVGQQLEKTLRMYDN 385 (386)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 6777888889999999888764
No 97
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=29.79 E-value=2.7e+02 Score=25.67 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=50.5
Q ss_pred CCCChhHHH-HHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 008136 119 PKTDPKEKA-KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDEL 197 (576)
Q Consensus 119 ~K~DP~Eke-K~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~L 197 (576)
.|.+|+|.+ -..+.+| ...|+.+.++++.++.++..+..+=-. +.-+.+.+...-.|.+.|.+.+-.+|-.||.=.|
T Consensus 10 kK~~peee~~lKkL~dv-eksv~~~~k~l~~l~~el~~iekGFL~-k~l~~ea~~kl~Krik~~~E~~Mk~LE~LDs~~i 87 (135)
T 1i6z_A 10 EKSNPEEEVELKKLKDL-EVSAEKIANHLQELNKELSGIQQGFLA-KELQAEALCKLDRKVKATIEQFMKILEEIDTMVL 87 (135)
T ss_dssp CCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTSSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcchh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 467887544 3344444 555999999999999999998321111 1222334445556677777777777777777666
Q ss_pred Ch
Q 008136 198 SP 199 (576)
Q Consensus 198 dp 199 (576)
.+
T Consensus 88 p~ 89 (135)
T 1i6z_A 88 PE 89 (135)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 98
>1bgc_A Granulocyte colony-stimulating factor; cytokine; 1.70A {Bos taurus} SCOP: a.26.1.1 PDB: 1rhg_A 2d9q_A* 1cd9_A* 1pgr_A 1bge_A 1bgd_A 1gnc_A
Probab=29.28 E-value=1.4e+02 Score=28.39 Aligned_cols=51 Identities=8% Similarity=0.246 Sum_probs=36.0
Q ss_pred HHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHH-HHhHHHHHh
Q 008136 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKT 64 (576)
Q Consensus 12 Dr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKL-QRlRDQIKt 64 (576)
|.||.|+..|+-.|..+.+-+++. ..+-+++++ .|..-||-| |.++.++|.
T Consensus 72 e~CL~~i~sGL~~yQ~~L~~L~~~-~~~~~~~~~-~Lq~d~~~L~~~i~q~~k~ 123 (174)
T 1bgc_A 72 RGCLNQLHGGLFLYQGLLQALAGI-SPELAPTLD-TLQLDVTDFATNIWLQMED 123 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTS-STTTHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhh-CcccchHHH-HHHHHHHHHHHHHHHHHHc
Confidence 579999999999999998888664 334455554 355555554 566666665
No 99
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=29.20 E-value=69 Score=27.99 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhcc
Q 008136 44 FEADLKKEIKKLQRYRDQIKTWIQS 68 (576)
Q Consensus 44 lE~DLKKEIKKLQRlRDQIKtWlas 68 (576)
...+|.++|+.||+.++.|..++..
T Consensus 87 ~~~~l~~~i~~L~~~~~~L~~~~~~ 111 (135)
T 1q06_A 87 KVAEIERHIEELQSMRDQLLALANA 111 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999988754
No 100
>2l3y_A Interleukin-6; cytokine, signaling, GP-130, transcription; NMR {Mus musculus}
Probab=29.04 E-value=28 Score=33.48 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=34.3
Q ss_pred HHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHH-HHhHHHHHh
Q 008136 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKT 64 (576)
Q Consensus 12 Dr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKL-QRlRDQIKt 64 (576)
|.||.||..|+-+|..+.+-|++.-..+-|+.++. |..-+|-| |.+|+++|.
T Consensus 86 e~CL~rI~sGL~eyq~~L~~lq~~~~~~~~~~~~~-lq~~t~~L~~~i~q~~k~ 138 (190)
T 2l3y_A 86 EICLLKISSGLLEYHSYLEYMKNNLKDNKKDKARV-LQRDTETLIHIFNQEVKD 138 (190)
T ss_dssp CSCSCCCHHHHHHHHHHHHHHHHTCCHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCCccchhhHHH-HHHHHHHHHHHHHHHHHc
Confidence 56999999999999999988876655454554443 33334433 345555554
No 101
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=28.88 E-value=99 Score=27.48 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhHHHHHhhh
Q 008136 46 ADLKKEIKKLQRYRDQIKTWI 66 (576)
Q Consensus 46 ~DLKKEIKKLQRlRDQIKtWl 66 (576)
.+|.++|+.||+.++.|...+
T Consensus 105 ~~l~~~i~~L~~~~~~L~~~i 125 (148)
T 3gpv_A 105 ANVLQLIQDTEKNLKKIQQKI 125 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544433
No 102
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=28.62 E-value=6.2e+02 Score=27.80 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=15.7
Q ss_pred chhhhHHHHHHHHHHhHHhHHHHHHHhh
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVY 33 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~iyeKl~ 33 (576)
.|+.+|.+.-+.+.+..+..+.+..|+.
T Consensus 493 ~l~~~~~~~~~~l~~A~~sD~~v~~~~~ 520 (704)
T 2xs1_A 493 PLRAEGTNFRTVLDKAVQADGQVKECYQ 520 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4555555555555555555555555553
No 103
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=28.52 E-value=1.4e+02 Score=27.35 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 008136 84 LVDARKLIEREMERFK 99 (576)
Q Consensus 84 L~E~RKlIE~~MErFK 99 (576)
..++|..|.+.||.||
T Consensus 168 ~ee~k~kl~~~leeLk 183 (185)
T 3r2p_A 168 SDELRQRLAARLEALK 183 (185)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4466777777777665
No 104
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.51 E-value=1.2e+02 Score=29.13 Aligned_cols=82 Identities=17% Similarity=0.183 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhHhhHHHHhhhhhcccCCC----------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CChhhhh
Q 008136 135 LNNLVSELESQIDSFEAELEGLTVKKGKT----------RPPRLTHLETSITRHKAHIMKLELILRLLDNDE-LSPEQVN 203 (576)
Q Consensus 135 L~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk----------~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~-Ldpe~V~ 203 (576)
+..-+..|..++..+..|++.+..|=... -...+..|....+..+.+|..||..-.-|++-. +....+.
T Consensus 54 ~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sle 133 (189)
T 2v71_A 54 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLE 133 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Confidence 34455556666666666666552211100 012366777778888888888888777776644 4456666
Q ss_pred hhhHHHHHHHHhC
Q 008136 204 DVKDLLEDYVERN 216 (576)
Q Consensus 204 dIKEdIeyYVE~n 216 (576)
|+...+..-||.|
T Consensus 134 D~e~kln~aiEr~ 146 (189)
T 2v71_A 134 DFEQRLNQAIERN 146 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666654
No 105
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.11 E-value=3.4e+02 Score=28.80 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=32.3
Q ss_pred cchhhhHHHHHHHHHHhHHhHHHHHHHhhcC------------CChhhHHHHHHHHHHHHHHHH-HhHHHH
Q 008136 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDT------------DNANQKEKFEADLKKEIKKLQ-RYRDQI 62 (576)
Q Consensus 5 RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a------------~n~nQKEKlE~DLKKEIKKLQ-RlRDQI 62 (576)
|.+..-|+++-..|.+....|.++|.-+... .|.|-=-.|-.||.+-|.=|| +.++||
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666666554322 122223344457777777776 445554
No 106
>1alu_A Interleukin-6; cytokine, receptor, signaling, glycoprotein; HET: TLA; 1.90A {Homo sapiens} SCOP: a.26.1.1 PDB: 1il6_A 2il6_A 1p9m_B
Probab=28.03 E-value=79 Score=30.23 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=36.1
Q ss_pred HHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHH-HHhHHHHHhh
Q 008136 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKTW 65 (576)
Q Consensus 12 Dr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKL-QRlRDQIKtW 65 (576)
+.||.||..|+-.|..+.+-|++.-..+ ++.+ ..|..-++-| |-+|+++|.|
T Consensus 83 e~CL~ri~~GL~~yq~~L~~l~~~f~~~-~~~~-~~lq~~t~~L~~~i~~k~k~~ 135 (186)
T 1alu_A 83 ETCLVKIITGLLEFEVYLEYLQNRFESS-EEQA-RAVQMSTKVLIQFLQKKAKNL 135 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTT-HHHH-HHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccc-cccH-HHHHHHHHHHHHHHHHHHhcc
Confidence 6799999999999999888876543322 4433 3344455554 5677888888
No 107
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=28.01 E-value=1.7e+02 Score=29.21 Aligned_cols=107 Identities=21% Similarity=0.290 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhH-------HHHHHHHHHHHHHHHHHHHhHhhHHHHhhh
Q 008136 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKE-------KAKSETRDWLNNLVSELESQIDSFEAELEG 155 (576)
Q Consensus 83 ~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~E-------keK~E~~~WL~~~IdeL~~QiE~~EaEiE~ 155 (576)
.|.|.-+.+|.+.||-|..|-+.--+ |. +..+ ++-.+...|...+=+.|+..+|..+--
T Consensus 43 SleEIqkKLeAAEERRks~Ea~~lk~------la-----ekrEhe~evlqKa~Een~~F~k~aeEkL~~KME~~kEn--- 108 (240)
T 4f61_I 43 SLEEIQKKLEAAEERRKYQEAELLKH------LA-----EKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKEN--- 108 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH------TT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHH------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 57888889999999998887654322 21 1112 222344555555555555555554433
Q ss_pred hhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh--hCCCCChhhhhhhhHHHHHHHH
Q 008136 156 LTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLL--DNDELSPEQVNDVKDLLEDYVE 214 (576)
Q Consensus 156 Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlL--dNd~Ldpe~V~dIKEdIeyYVE 214 (576)
|-..|..+++|.+.|-...|.|-|.+ .|+...-+-..+|+.-++.+=+
T Consensus 109 -----------ReA~laal~erLkek~~~aeeVRr~~~~~~~~~~k~~~eei~~KLeaAeE 158 (240)
T 4f61_I 109 -----------REAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKE 158 (240)
T ss_dssp -----------HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999998876 5554555555556555555543
No 108
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=27.99 E-value=1.1e+02 Score=26.20 Aligned_cols=53 Identities=19% Similarity=0.326 Sum_probs=31.7
Q ss_pred chhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhh
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKK 75 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~ 75 (576)
+|+.+|..+=.++..--..+..+-.++.+.. -+.-+|+=|++|..| |||||-.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~-------~~~~~~~hI~~Lh~Y----------NeiKD~g 57 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLKNRD-------AKQTVQKHIDLLHTY----------NEIRDIA 57 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSSC-------HHHHHHHHHHHHHHH----------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-------HHHHHHHHHHHHHHH----------hHHHHHH
Confidence 4555555555555554444555444443111 355688889999877 6788766
No 109
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.82 E-value=72 Score=32.43 Aligned_cols=6 Identities=33% Similarity=0.440 Sum_probs=2.3
Q ss_pred HHHHHh
Q 008136 98 FKICEK 103 (576)
Q Consensus 98 FK~vEK 103 (576)
|-.+|+
T Consensus 413 ~~~~~~ 418 (471)
T 3mq9_A 413 FQDVEA 418 (471)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333443
No 110
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=27.72 E-value=1.1e+02 Score=24.64 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccc
Q 008136 46 ADLKKEIKKLQRYRDQIKTWIQSS 69 (576)
Q Consensus 46 ~DLKKEIKKLQRlRDQIKtWlasn 69 (576)
..|.++|..|++.++.|..++..-
T Consensus 49 ~~l~~~i~~L~~~~~~L~~~~~~~ 72 (99)
T 1q08_A 49 QEVEARIAELQSMQRSLQRLNDAC 72 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999998877643
No 111
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=27.62 E-value=3.8e+02 Score=25.03 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=17.1
Q ss_pred HHHHHHhhhCCCCChhhhhhhhHHHHHHHHhCCC
Q 008136 185 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQD 218 (576)
Q Consensus 185 LE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~nqd 218 (576)
+|.|...+++ ++|+ .||+..|+.|--....
T Consensus 254 ~~~l~~~~~~--id~~--~D~~~fi~~~~tg~~~ 283 (305)
T 2efl_A 254 LDGIVKAAES--IDQK--NDSQLVIEAYKSGFEP 283 (305)
T ss_dssp HHHHHHHHHT--CCHH--HHHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHh--cCch--hhHHHHHHHcCCCCCC
Confidence 3445555544 5554 6677777777655433
No 112
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=27.54 E-value=97 Score=32.20 Aligned_cols=42 Identities=7% Similarity=0.184 Sum_probs=18.5
Q ss_pred HhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 008136 23 DVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWI 66 (576)
Q Consensus 23 e~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWl 66 (576)
..|...|.++... -.|+.++..+.+.-.+.|..++.|+..+.
T Consensus 179 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~l~~l~~ql~ei~ 220 (517)
T 4ad8_A 179 QAYAAAHAAWREA--VSRLERLQASQRERARQIDLLAFQVQEIS 220 (517)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5555555555332 12333444443333334444555554433
No 113
>1xs8_A UPF0269 protein YGGX; helix-turn-helix, metal transport; NMR {Salmonella typhimurium} SCOP: d.279.1.1 PDB: 1yhd_A
Probab=27.44 E-value=30 Score=30.09 Aligned_cols=14 Identities=50% Similarity=0.824 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHH
Q 008136 85 VDARKLIEREMERF 98 (576)
Q Consensus 85 ~E~RKlIE~~MErF 98 (576)
-++|+.+|++||+|
T Consensus 60 ~~~Rk~L~~qMekF 73 (91)
T 1xs8_A 60 AEHRKLLEQEMVSF 73 (91)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46899999999999
No 114
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=27.14 E-value=8.3e+02 Score=32.39 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHhHHhHHHHHHHh
Q 008136 8 QGEIDRVLKKVQEGVDVFDSIWNKV 32 (576)
Q Consensus 8 Q~EIDr~LKKV~EGVe~Fd~iyeKl 32 (576)
+.||+.-..++.-|++=.++.-+.|
T Consensus 1912 ~~el~~~~~rl~~GL~KL~et~~~V 1936 (3245)
T 3vkg_A 1912 RDQLEEEQLHLNIGLKKLRDTEAQV 1936 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777776555544333
No 115
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=27.11 E-value=1.3e+02 Score=31.85 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHHhhcCCC
Q 008136 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDN 37 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n 37 (576)
++++.+|++|..--.....+-..+...-+
T Consensus 41 ~~LE~~l~elsn~ts~v~~Lvk~iq~~~~ 69 (409)
T 1m1j_C 41 LEIEGLLQQATNSTGSIEYLIQHIKTIYP 69 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35555666655555555544444444433
No 116
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=27.03 E-value=3e+02 Score=25.26 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHH
Q 008136 127 AKSETRDWLNNLVSELESQIDSFEAE 152 (576)
Q Consensus 127 eK~E~~~WL~~~IdeL~~QiE~~EaE 152 (576)
.|.....-|.+++...+.++...+-.
T Consensus 97 dR~~L~~~L~~~~~~~~~~l~e~e~~ 122 (152)
T 4fla_A 97 DRRQLARMLVEYTQNQKDVLSEKEKK 122 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444544444444444433
No 117
>1i1r_B Viral IL-6; cytokine/receptor complex, GP130; 2.40A {Human herpesvirus 8} SCOP: a.26.1.1
Probab=26.90 E-value=98 Score=29.55 Aligned_cols=52 Identities=13% Similarity=0.200 Sum_probs=31.6
Q ss_pred HHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHH-HHhHHHHHhh
Q 008136 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKTW 65 (576)
Q Consensus 12 Dr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKL-QRlRDQIKtW 65 (576)
+.||.||..|+-.|..+.+-+.+.-..+ ++..+ .|..-++-| |-+|+++|.|
T Consensus 68 e~CL~rI~~GL~~yq~~L~~l~~~f~~~-~~~v~-~lq~~t~~L~~~i~q~~k~~ 120 (181)
T 1i1r_B 68 TSCLKKLADGFFEFEVLFKFLTTEFGKS-VINVD-VMELLTKTLGWDIQEELNKL 120 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTT-STTGG-GHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccc-cccHH-HHHHHHHHHHHHHHHHHhCc
Confidence 6899999999999999888664322111 21111 122233333 4567777777
No 118
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=26.85 E-value=1.1e+02 Score=27.69 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHH------HHHHHHHHHHH
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEA------DLKKEIKKLQR 57 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~------DLKKEIKKLQR 57 (576)
|++.+++.+...+.+-...-.++-..+-.+ ++|+|. +|++||..||+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~-----~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAA-----QIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
No 119
>1t07_A Hypothetical UPF0269 protein PA5148; structural genomics, APC5047, conserved hypothetical protein, PSI, protein structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa} SCOP: d.279.1.1
Probab=26.83 E-value=31 Score=30.16 Aligned_cols=14 Identities=36% Similarity=0.921 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHH
Q 008136 85 VDARKLIEREMERF 98 (576)
Q Consensus 85 ~E~RKlIE~~MErF 98 (576)
-++|+.+|++||+|
T Consensus 62 ~~aRk~L~~qMekF 75 (94)
T 1t07_A 62 AEDRKFLQQEMDKF 75 (94)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46899999999999
No 120
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=26.54 E-value=77 Score=27.74 Aligned_cols=34 Identities=21% Similarity=0.153 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhCCCCChhhhh-hhhHHHHHHHHh
Q 008136 182 IMKLELILRLLDNDELSPEQVN-DVKDLLEDYVER 215 (576)
Q Consensus 182 I~kLE~lLRlLdNd~Ldpe~V~-dIKEdIeyYVE~ 215 (576)
+.+||.|++.|++|.|+-|+.- ..++-++.+-.+
T Consensus 36 l~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C 70 (100)
T 1vp7_A 36 LAELESLVSAMENGTLPLEQSLSAYRRGVELARVC 70 (100)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999976644 355555554444
No 121
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=26.49 E-value=64 Score=27.58 Aligned_cols=32 Identities=31% Similarity=0.577 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhh
Q 008136 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKK 75 (576)
Q Consensus 41 KEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~ 75 (576)
++|+..+.|++|++.- +.++.|+.+++--|+.
T Consensus 40 ~dkl~~eek~~I~~~i---~el~~~L~~~~~ad~e 71 (120)
T 2p32_A 40 KDKISPEDKKKIEDKC---DEILKWLDSNQTAEKE 71 (120)
T ss_dssp GGGSCHHHHHHHHHHH---HHHHHHHHHHTTCCHH
T ss_pred hccCCHHHHHHHHHHH---HHHHHHHHcCCcCCHH
Confidence 5677777777665543 5567798755323444
No 122
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=25.81 E-value=1.5e+02 Score=24.66 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 008136 172 ETSITRHKAHIMKLELILRL 191 (576)
Q Consensus 172 e~~ieRhk~HI~kLE~lLRl 191 (576)
+..+++.--.+.+||..+-.
T Consensus 58 E~qL~q~~~ql~~LE~q~~~ 77 (79)
T 4abm_A 58 EKQLAQIDGTLSTIEFQREA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444444455555554433
No 123
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=25.79 E-value=1.4e+02 Score=25.13 Aligned_cols=52 Identities=17% Similarity=0.346 Sum_probs=29.9
Q ss_pred HHHHHHHHhHHhHHHHHHHhh----cCC-ChhhHHHHHHHHHHHHHHHHH-hHHHHHh
Q 008136 13 RVLKKVQEGVDVFDSIWNKVY----DTD-NANQKEKFEADLKKEIKKLQR-YRDQIKT 64 (576)
Q Consensus 13 r~LKKV~EGVe~Fd~iyeKl~----~a~-n~nQKEKlE~DLKKEIKKLQR-lRDQIKt 64 (576)
.+++.|..+++.=+++-+.|. +.. ++++|-+|-+-|+-=-+.|.+ ++..+|.
T Consensus 34 ~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~ 91 (97)
T 3onj_A 34 TTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQS 91 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666654 332 556777776655544444444 4444443
No 124
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.40 E-value=1.8e+02 Score=22.38 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=21.5
Q ss_pred HHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008136 136 NNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELIL 189 (576)
Q Consensus 136 ~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lL 189 (576)
...+++|+.+++.++.+-. +|...+...+-++..|..+|
T Consensus 21 k~~~~~Le~~~~~L~~~n~---------------~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNG---------------QLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHh
Confidence 3445666666666666643 33455555555555555443
No 125
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=25.17 E-value=2.2e+02 Score=27.16 Aligned_cols=64 Identities=14% Similarity=0.206 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 008136 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 196 (576)
Q Consensus 130 E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~ 196 (576)
.+.+..-.+++.|+.++|.+|.++-.- .++..-.++-.|+..+-..+..+.-+..++..|.++.
T Consensus 164 ~ivd~y~~~l~~i~~~id~lE~~l~~~---~~~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 227 (280)
T 4egw_A 164 EITRSYSRILMNLEDELEELEDKLLAG---YDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKY 227 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC
Confidence 455666677888888888888776321 1111124677788888888888888877777776544
No 126
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=25.09 E-value=2.4e+02 Score=23.96 Aligned_cols=52 Identities=21% Similarity=0.299 Sum_probs=30.1
Q ss_pred chhhhHHHHHHHHHHhHHhHHHHHHHhhcCCC--hhhHHHHHHHHHHHHHHHHH
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN--ANQKEKFEADLKKEIKKLQR 57 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n--~nQKEKlE~DLKKEIKKLQR 57 (576)
-..+|+..++.-+.|-|+.++.--.=++..+. =..|.++=++|+++|++|+.
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~ 89 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKL 89 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666555544443332211 11477777777777777763
No 127
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=25.05 E-value=1.2e+02 Score=26.02 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC-CCCChhhhh
Q 008136 169 THLETSITRHKAHIMKLELILRLLDN-DELSPEQVN 203 (576)
Q Consensus 169 ~eLe~~ieRhk~HI~kLE~lLRlLdN-d~Ldpe~V~ 203 (576)
.+.+.+|.+.+-.|+.||..|..+.+ ..++|..|-
T Consensus 15 ~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~ 50 (93)
T 3t98_B 15 QQFEVQLQQYRQQIEELENHLATQANNSHITPQDLS 50 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 34444555555555555555555544 224444443
No 128
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=24.92 E-value=2.4e+02 Score=22.59 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008136 135 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 192 (576)
Q Consensus 135 L~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlL 192 (576)
|-++|=.|+.|+..+..|.-. +...++.-.---.+||.++|-+
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~---------------m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKK---------------MKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888777433 3455555555566788877755
No 129
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=24.83 E-value=7.1e+02 Score=27.18 Aligned_cols=15 Identities=13% Similarity=0.229 Sum_probs=6.9
Q ss_pred hhhhhhhHHHHHHHH
Q 008136 200 EQVNDVKDLLEDYVE 214 (576)
Q Consensus 200 e~V~dIKEdIeyYVE 214 (576)
++++.++..|+..-.
T Consensus 567 ~~~~~~~~ei~~l~~ 581 (592)
T 1f5n_A 567 KESRIMKNEIQDLQT 581 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445544444433
No 130
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris PV. campestris STR. ATCC 33913, structural genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}
Probab=24.68 E-value=2.3e+02 Score=26.33 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhC
Q 008136 170 HLETSITRHKAHIMKLELILRLLDN 194 (576)
Q Consensus 170 eLe~~ieRhk~HI~kLE~lLRlLdN 194 (576)
.++..++--+-||.+||.|+..|.-
T Consensus 41 a~e~Hl~eT~~qi~rLe~vf~~lg~ 65 (166)
T 3hiu_A 41 RIEQHVEETQQQSAGVQRCLELLNG 65 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4455555557899999999999864
No 131
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=24.20 E-value=3.1e+02 Score=28.61 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 131 TRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 131 ~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
..+-+..-|.+|+.+++.+|.++..|
T Consensus 70 ~~~~a~~e~~~l~~~~~~le~~l~~l 95 (354)
T 3d5a_X 70 LKEMAKAEREALLARKEALEKELERH 95 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445666778888888888777665
No 132
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=24.16 E-value=2.8e+02 Score=23.76 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 008136 168 LTHLETSITRHKAHIMKLEL 187 (576)
Q Consensus 168 l~eLe~~ieRhk~HI~kLE~ 187 (576)
|+.|+..|+||+--|.+|+.
T Consensus 60 i~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 60 IERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 44556666666666666653
No 133
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=24.16 E-value=1.7e+02 Score=26.44 Aligned_cols=43 Identities=14% Similarity=0.327 Sum_probs=35.0
Q ss_pred chhhhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHH
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRD 60 (576)
-|+-|++|+-+--..-+..|++. |-.|-.|+.+|+-++.|-.|
T Consensus 36 PL~~ELeRLr~~~d~~~K~HE~k------------klqLkse~e~E~ae~k~KYD 78 (115)
T 3vem_A 36 PFLHELEKLRRESENSKKTFEEK------------KSILKAELERKMAEVQAEFR 78 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 47789999999888888888875 66788889999999886544
No 134
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=24.11 E-value=3.6e+02 Score=23.55 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=4.9
Q ss_pred hhHHHHHHHHHH
Q 008136 9 GEIDRVLKKVQE 20 (576)
Q Consensus 9 ~EIDr~LKKV~E 20 (576)
.+|+.+..++.+
T Consensus 13 ~~~~~~~~~~~~ 24 (284)
T 1c1g_A 13 LDKENALDRADE 24 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhHHHHHHHHHH
Confidence 344444443333
No 135
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}
Probab=24.07 E-value=2.4e+02 Score=26.40 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008136 169 THLETSITRHKAHIMKLELILRLLDN 194 (576)
Q Consensus 169 ~eLe~~ieRhk~HI~kLE~lLRlLdN 194 (576)
..++..++--+-||.+||.|+..|.-
T Consensus 43 ~a~e~Hl~eT~~qi~rLe~vf~~lg~ 68 (171)
T 3ogh_B 43 ARIEQHLSETKNQIVQLETILDRNDI 68 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34555555557899999999999764
No 136
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=24.04 E-value=1.7e+02 Score=26.11 Aligned_cols=80 Identities=18% Similarity=0.195 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCC
Q 008136 83 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGK 162 (576)
Q Consensus 83 ~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~~~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~K 162 (576)
.+...++-++..|+-++.+|... ...++++ ..-|.+|..|+..-|..+..|...=..
T Consensus 14 ~~~ql~~qL~k~~~~r~~Le~~w-------------------~~k~E~~----k~qV~~L~~~~q~sE~~L~~Lqq~fsq 70 (112)
T 1x79_B 14 MLRQANDQLEKTMKDKQELEDFI-------------------KQSSEDS----SHQISALVLRAQASEILLEELQQGLSQ 70 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777662 2233344 567889999999999999888421111
Q ss_pred --C-CCchhHHHHHHHHHHHHHHHHH
Q 008136 163 --T-RPPRLTHLETSITRHKAHIMKL 185 (576)
Q Consensus 163 --k-~~~rl~eLe~~ieRhk~HI~kL 185 (576)
. -..++..|...-++-..|+.+|
T Consensus 71 ~q~~vq~qL~~Lt~~Re~V~~eL~rL 96 (112)
T 1x79_B 71 AKRDVQEQMAVLMQSREQVSEELVRL 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1233444444444444444444
No 137
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=23.86 E-value=91 Score=30.25 Aligned_cols=44 Identities=16% Similarity=0.378 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhHHH----HHhhhcccchhhhhhhhhHHHHHHHHHHHHHH
Q 008136 47 DLKKEIKKLQRYRDQ----IKTWIQSSEIKDKKVSASYEQALVDARKLIER 93 (576)
Q Consensus 47 DLKKEIKKLQRlRDQ----IKtWlasneIKDK~~~a~~~~~L~E~RKlIE~ 93 (576)
+|-|+|+||+|...+ ||.-+..+++. .+-+|.+-|+..||.+..
T Consensus 25 ~LdR~~~kle~eEkk~~~~IKkaakkg~~~---~arilAkelVR~Rk~~~r 72 (218)
T 3frt_A 25 VVDRQIRDIQREEEKVKRSVKDAAKKGQKD---VCIVLAKEMIRSRKAVSK 72 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHHHH
Confidence 455555555544333 33333334433 345788888888887654
No 138
>2kkm_A Translation machinery-associated protein 16; nucleus, structural genomics, PSI-2, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=23.83 E-value=1.7e+02 Score=26.56 Aligned_cols=44 Identities=11% Similarity=0.358 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHH
Q 008136 129 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITR 177 (576)
Q Consensus 129 ~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieR 177 (576)
.|++++|..+|..-...+++++.+ .++|+....|.+.|+..+++
T Consensus 48 ~e~~~lI~~yl~R~d~ELeql~~~-----rR~gRp~s~Re~~L~~~~~~ 91 (144)
T 2kkm_A 48 AHTREFIQSFIERDDTELDELKKK-----RRSNRPPSNRQVLLQQRRDQ 91 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----GGGTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHh-----hCCCCCCchHHHHHHHHHHH
Confidence 566777777776666656655553 35666677888888776654
No 139
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=23.83 E-value=3.8e+02 Score=25.43 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=5.3
Q ss_pred HHHHHHHHHhHHH
Q 008136 49 KKEIKKLQRYRDQ 61 (576)
Q Consensus 49 KKEIKKLQRlRDQ 61 (576)
..+||..++.|..
T Consensus 148 ~~~~k~i~k~rkk 160 (256)
T 1zww_A 148 DKDLREIQHHLKK 160 (256)
T ss_dssp HTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 140
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=23.74 E-value=2.5e+02 Score=28.54 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=37.0
Q ss_pred HHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008136 18 VQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMER 97 (576)
Q Consensus 18 V~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MEr 97 (576)
|-+=...|+.+|+.++.+.+...|++ |+.-|.+|+ .+|+.-...- ......|.+.|..++..--.
T Consensus 95 I~~Y~~~f~syy~~L~~~~d~~d~~~----l~~~L~~L~---~~i~~~q~~~--------~~~~~~L~~F~~~l~~d~~~ 159 (346)
T 2nrj_A 95 IVEYDTTFDNYYETMVEAINTGDGET----LKEGITDLR---GEIQQNQKYA--------QQLIEELTKLRDSIGHDVRA 159 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHH----HHHHHHHHH---HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcchHHH----HHHHHHHHH---HHHHHHHHHH--------HHHHHHHHHHHHHHHhhHhh
Confidence 33344557777888876654444444 344444333 4444332221 12334677777777766666
Q ss_pred HHHHHh
Q 008136 98 FKICEK 103 (576)
Q Consensus 98 FK~vEK 103 (576)
|+..--
T Consensus 160 f~~~~~ 165 (346)
T 2nrj_A 160 FGSNKE 165 (346)
T ss_dssp HHHHHH
T ss_pred HHhHHH
Confidence 655443
No 141
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=23.62 E-value=2.3e+02 Score=22.46 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=28.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhhh
Q 008136 118 QPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 157 (576)
Q Consensus 118 ~~K~DP~EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls 157 (576)
..+++|++-.. +..=+....++|+..+..+...++.|.
T Consensus 5 ~i~V~~e~l~~--~A~~~~~~~~~i~~~l~~L~~~~~~l~ 42 (98)
T 3gwk_C 5 QIKLTPEELRS--SAQKYTAGSQQVTEVLNLLTQEQAVID 42 (98)
T ss_dssp HBCSCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678866533 455678888888888888888888884
No 142
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.60 E-value=5.7e+02 Score=26.90 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 008136 168 LTHLETSITRHKAHIMKLELILRLLDN 194 (576)
Q Consensus 168 l~eLe~~ieRhk~HI~kLE~lLRlLdN 194 (576)
|..|+..+..++-.|..|+..+..|.+
T Consensus 107 i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 107 IQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 445556666666666666665555554
No 143
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=23.56 E-value=5.4e+02 Score=29.00 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=21.9
Q ss_pred cchhhhHHHHHHHHHHhHHhHHHHHHHhhc
Q 008136 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYD 34 (576)
Q Consensus 5 RKLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~ 34 (576)
|..-++++.-+|++.+--+.|+--|..+.+
T Consensus 150 r~~~q~~e~~ik~Le~~Qe~f~~~y~~~~~ 179 (683)
T 1yvl_A 150 KDKVMCIEHEIKSLEDLQDEYDFKCKTLQN 179 (683)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344467788888888888888887877753
No 144
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=23.39 E-value=2.8e+02 Score=21.93 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhHhhHHHHhhhh
Q 008136 135 LNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 135 L~~~IdeL~~QiE~~EaEiE~L 156 (576)
.+.-|.+|+++|..++.|++++
T Consensus 54 ~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 54 AKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4556899999999999999987
No 145
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=23.39 E-value=1.9e+02 Score=31.61 Aligned_cols=55 Identities=25% Similarity=0.363 Sum_probs=39.9
Q ss_pred hhhhHHHHHHHHHHhHHhHHHHHHHhhc-------------CCChhhHHHHHHHHHHHHHHHHHhHHH
Q 008136 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYD-------------TDNANQKEKFEADLKKEIKKLQRYRDQ 61 (576)
Q Consensus 7 LQ~EIDr~LKKV~EGVe~Fd~iyeKl~~-------------a~n~nQKEKlE~DLKKEIKKLQRlRDQ 61 (576)
-|+|+.|+-|.=++-.+.|+..-..... ..|+.-|.+||++|++-=+.|-.+..+
T Consensus 14 yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~ 81 (497)
T 3iox_A 14 YQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKD 81 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999988888888888765554442 223344788999999888888777555
No 146
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=23.33 E-value=76 Score=29.69 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhcccchh
Q 008136 44 FEADLKKEIKKLQRYRDQIKTWIQSSEIK 72 (576)
Q Consensus 44 lE~DLKKEIKKLQRlRDQIKtWlasneIK 72 (576)
+|..||++-+.|..+||.|+.=+...++|
T Consensus 20 ~~~~lk~Q~~~lw~~rD~L~~~ls~~eLk 48 (160)
T 2riq_A 20 LEKALKAQNDLIWNIKDELKKVCSTNDLK 48 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHHHH
Confidence 35558899999999999998766666665
No 147
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=23.17 E-value=1e+02 Score=27.38 Aligned_cols=44 Identities=5% Similarity=0.101 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 008136 45 EADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREM 95 (576)
Q Consensus 45 E~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~M 95 (576)
...|.++|+.|++.++.|...+..-+-.+.- ..-...++|++-|
T Consensus 89 ~~~L~~~i~~l~~~l~~l~~~i~~~~~~~~~-------~~~~~~~Li~~~~ 132 (146)
T 3hh0_A 89 REVLLAEQERIAKVLSHMDEMTKKFQKEERV-------NVALFSSFLQTFI 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSEE-------EHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccc-------chHHHHHHHHHHH
Confidence 3578899999999999999888754433333 3344556666654
No 148
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=23.14 E-value=1.4e+02 Score=24.54 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=11.7
Q ss_pred HHHHHHhHhhHHHHhhhhh
Q 008136 139 VSELESQIDSFEAELEGLT 157 (576)
Q Consensus 139 IdeL~~QiE~~EaEiE~Ls 157 (576)
++.|..+|+.+|++++.|.
T Consensus 24 le~le~~Ie~LE~~i~~le 42 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQ 42 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666653
No 149
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=22.97 E-value=2.1e+02 Score=22.35 Aligned_cols=39 Identities=33% Similarity=0.445 Sum_probs=21.0
Q ss_pred HHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008136 136 NNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELIL 189 (576)
Q Consensus 136 ~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lL 189 (576)
...|++|..+++.++.+-+.| ...|...+-.+..|..+|
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L---------------~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSAL---------------QTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Confidence 344566666666666664433 444445555555555554
No 150
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=22.72 E-value=2.9e+02 Score=27.50 Aligned_cols=63 Identities=22% Similarity=0.275 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 008136 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 195 (576)
Q Consensus 130 E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd 195 (576)
.+.+..-..++.++.++|.+|.++-. ...+..-.++-.++..+-+.+..+.-+..+|..|..+
T Consensus 188 ~ivd~y~~~l~~l~~~id~lE~~v~~---~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~ 250 (363)
T 2iub_A 188 ALVDDYFVLLEKIDDEIDVLEEEVLE---RPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRD 250 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS---SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455556666777777777766421 1111113568888888889999999888888777654
No 151
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.63 E-value=2.4e+02 Score=21.23 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhc
Q 008136 41 KEKFEADLKKEIKKLQRYRDQIKTWIQ 67 (576)
Q Consensus 41 KEKlE~DLKKEIKKLQRlRDQIKtWla 67 (576)
.+++-..|++-.++|...|+.|..|-.
T Consensus 28 ~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 28 FLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888899999999998843
No 152
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A
Probab=22.49 E-value=4.5e+02 Score=25.15 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=17.3
Q ss_pred HHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008136 62 IKTWIQSSEIKDKKVSASYEQALVDARKLIEREMER 97 (576)
Q Consensus 62 IKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MEr 97 (576)
.|+++..+++. .-.+||..|-.+|-.
T Consensus 169 ~k~~lrhp~~~----------~a~~nRd~v~~qm~~ 194 (205)
T 1dow_A 169 SQACLQHPDVA----------AYKANRDLIYKQLQQ 194 (205)
T ss_dssp HHHHHHCTTCH----------HHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCH----------HHHHHHHHHHHHHHH
Confidence 36677666655 556778877777754
No 153
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=22.35 E-value=2.3e+02 Score=30.68 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=23.2
Q ss_pred HHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHh
Q 008136 15 LKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRY 58 (576)
Q Consensus 15 LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRl 58 (576)
-+.|...|+..+.+.+.+.+.++.. .-|-..||-..++-|+.
T Consensus 90 e~~V~~dl~~Le~~l~~isn~Ts~a--~~~v~~ik~s~~~~q~~ 131 (461)
T 3ghg_B 90 ERPIRNSVDELNNNVEAVSQTSSSS--FQYMYLLKDLWQKRQKQ 131 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHhccccCC
Confidence 3456666666666666665544333 33445555555555543
No 154
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.14 E-value=79 Score=32.78 Aligned_cols=40 Identities=18% Similarity=0.362 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHH
Q 008136 168 LTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYV 213 (576)
Q Consensus 168 l~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYV 213 (576)
+.+++..++..+..+.+.|.+.|.|.| +|.++|..|.-||
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~rr~l~n------~~~elkgnIrV~v 65 (403)
T 4etp_A 26 IKDTELGMKELNEILIKEETVRRTLHN------ELQELRGNIRVYL 65 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHcCCCeEEEE
Confidence 334455566666666677777777755 3555665555554
No 155
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=22.01 E-value=3e+02 Score=25.94 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHH---HHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHH
Q 008136 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEAD---LKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALV 85 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~D---LKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~ 85 (576)
..+-.++++|.+....|+.-..+-. +..=+.-++.| .++.+|||++.|--.-..-+...=.-+.-.......+.
T Consensus 99 ~~~g~a~~~ia~~~~~~~~~v~~~~---l~pL~~~l~~d~k~i~~~rKkle~~rLd~D~ak~k~~k~~eeEl~~A~~~fe 175 (240)
T 2z0v_A 99 IEVGESMKLMAEVKDSLDINVKQTF---IDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVGKIPDEEVRQAVEKFE 175 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4556788888888888887555432 22222233444 36777888877755544433221000111234445777
Q ss_pred HHHHHHHHHHHHHHH
Q 008136 86 DARKLIEREMERFKI 100 (576)
Q Consensus 86 E~RKlIE~~MErFK~ 100 (576)
+.|......|..|..
T Consensus 176 ~~~e~~~~~m~~~~~ 190 (240)
T 2z0v_A 176 ESKELAERSMFNFLE 190 (240)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777777877743
No 156
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Probab=21.96 E-value=94 Score=28.91 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccC
Q 008136 43 KFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLG 116 (576)
Q Consensus 43 KlE~DLKKEIKKLQRlRDQIKtWlasneIKDK~~~a~~~~~L~E~RKlIE~~MErFK~vEKE~KTKafSKEGL~ 116 (576)
-|..-||++||||+. .+|..-.++ + +-+..-..||.-=-|| ..|+|-||-
T Consensus 13 AFaKRlk~sVKKLE~---RLkKYepgS--------p----PALALqqqIeKTK~RF---------dkYgkSGLL 62 (154)
T 1qzv_F 13 XXXXXEKQALKKLQA---SLKLYADDS--------A----PALAIKATMEXXXXXX---------XXXXXXXXX 62 (154)
T ss_pred hhHHHHHHHHHHHHH---HHHcCCCCC--------h----HHHHHHHHHHHHhccc---------ccccccccc
Confidence 467789999999982 334433332 2 3344556677766788 889998884
No 157
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=21.80 E-value=3.2e+02 Score=22.12 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHH------------HHHHHHHHHHHHHHHHhhhCCCC-
Q 008136 131 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETS------------ITRHKAHIMKLELILRLLDNDEL- 197 (576)
Q Consensus 131 ~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~------------ieRhk~HI~kLE~lLRlLdNd~L- 197 (576)
..+++..++++....++.++.-+..+... ......+.++... +.+.......||.++..+.++.+
T Consensus 3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~--~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~ 80 (105)
T 1tqg_A 3 HMEYLGVFVDETKEYLQNLNDTLLELEKN--PEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIK 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45678888888888888888888766321 1111112222211 12334456788999988888875
Q ss_pred -ChhhhhhhhHHHH
Q 008136 198 -SPEQVNDVKDLLE 210 (576)
Q Consensus 198 -dpe~V~dIKEdIe 210 (576)
+++.++.|.+.++
T Consensus 81 ~~~~~~~~l~~~~d 94 (105)
T 1tqg_A 81 ITSDLLDKIFAGVD 94 (105)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 4555555554443
No 158
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=21.66 E-value=3.7e+02 Score=22.82 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008136 128 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 190 (576)
Q Consensus 128 K~E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLR 190 (576)
-......|...|+....++..++.+++.....=. ....+...++...+|+.....+.+.-..
T Consensus 72 ~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~-~a~~~~k~~e~L~er~~~~~~~~~~r~E 133 (150)
T 3ajw_A 72 YQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWR-EKKQRLQAWQTLQDRQTAAALLAENRMD 133 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777788888888888888777621000 0011233555666665555555544433
No 159
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=21.51 E-value=4.2e+02 Score=24.36 Aligned_cols=66 Identities=11% Similarity=0.248 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHhhhhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHH
Q 008136 130 ETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 209 (576)
Q Consensus 130 E~~~WL~~~IdeL~~QiE~~EaEiE~Ls~KK~Kk~~~rl~eLe~~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdI 209 (576)
+..+|--.-|-+|++++..+++++.. ++...-+++.-++..|. +.+..+...|
T Consensus 16 ~~~~~alr~ia~l~r~~~~i~~~~n~--------------eI~~ik~~~~~~~~~l~-------------~~i~~l~~~l 68 (171)
T 2p2u_A 16 RQAEGALAEIATIDRKVGEIEAQMNE--------------AIDAAKARASQKSAPLL-------------ARRKELEDGV 68 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
Confidence 34678888899999999999998743 55555556666665553 5678889999
Q ss_pred HHHHHhCCC-Cccc
Q 008136 210 EDYVERNQD-DFEE 222 (576)
Q Consensus 210 eyYVE~nqd-DF~E 222 (576)
..|.+.|-+ +|..
T Consensus 69 ~~y~e~~r~elf~k 82 (171)
T 2p2u_A 69 ATFATLNKTEMFKD 82 (171)
T ss_dssp HHHHHHTHHHHCC-
T ss_pred HHHHHHhHHHhcCC
Confidence 999999855 6553
No 160
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=21.41 E-value=2e+02 Score=26.74 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 125 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 125 EkeK~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
++-|.++..-|...|..|..|+++||.+.-++
T Consensus 24 e~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~ 55 (150)
T 4dci_A 24 PTWKEEAEREISNGIANADQQLAQLEQEGQTV 55 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788888888888888888887665
No 161
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=21.29 E-value=6e+02 Score=25.02 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=15.1
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 008136 27 SIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWI 66 (576)
Q Consensus 27 ~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWl 66 (576)
++|.++... ...-|+++..||..==.||+-+++.+..=+
T Consensus 4 e~~~~l~~~-~e~lr~~l~~~~eel~~~L~P~~~~l~~~l 42 (273)
T 3s84_A 4 ELHERLAKD-SEKLKEEIGKELEELRARLLPHANEVSQKI 42 (273)
T ss_dssp --------C-TTHHHHHHHHHHHHHHHHHGGGHHHHHHHH
T ss_pred hHhhhcccc-hHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 344454333 222355555554444445666666665433
No 162
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=21.20 E-value=6.7e+02 Score=25.55 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHhHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHH
Q 008136 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ 56 (576)
Q Consensus 9 ~EIDr~LKKV~EGVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQ 56 (576)
.|+|..+.....-+..++..+.++...... .=.|.+.++++|+.+|=
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~r~~~~~~~e~~~l~ 230 (386)
T 4akv_A 184 QDVEDRVDTFKAFSKKMDDSVLQLSTVASE-LVRKHVGGFRKEFQKLG 230 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHH
Confidence 355555555555555555555554432111 12255667888877664
No 163
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=21.18 E-value=3.9e+02 Score=23.31 Aligned_cols=43 Identities=7% Similarity=0.169 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhHHHHHHHHhC
Q 008136 174 SITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERN 216 (576)
Q Consensus 174 ~ieRhk~HI~kLE~lLRlLdNd~Ldpe~V~dIKEdIeyYVE~n 216 (576)
.-+-..+.+.-+|.+|..|.....++..-..|+.-+..|++.-
T Consensus 34 y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RA 76 (117)
T 2cpt_A 34 YEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRA 76 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 3445567788899999999887778877788999999999873
No 164
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=21.09 E-value=8.7e+02 Score=26.84 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=35.5
Q ss_pred chhhhHHHHHHHHHHhHHhHHHHHHHhhcC---------CChhhHHHHHHHHHHHHHH
Q 008136 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDT---------DNANQKEKFEADLKKEIKK 54 (576)
Q Consensus 6 KLQ~EIDr~LKKV~EGVe~Fd~iyeKl~~a---------~n~nQKEKlE~DLKKEIKK 54 (576)
+.-++++.-+|++..--|.|+--|.-+... .+.+||...|..|+++-+.
T Consensus 26 ~~~q~~e~~~k~Le~~Qe~F~~~y~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 83 (585)
T 1y1u_A 26 LITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERMSRETALQQKQVS 83 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTTSCCSSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHhhhccccchhhhhHHHHHHHHHHH
Confidence 344688899999999999999888766632 1245677778888777554
No 165
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=21.04 E-value=3.2e+02 Score=29.90 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=25.8
Q ss_pred HHHHHHHhHHHHHhhhcccch-hhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008136 51 EIKKLQRYRDQIKTWIQSSEI-KDKKVSASYEQALVDARKLIEREMERF 98 (576)
Q Consensus 51 EIKKLQRlRDQIKtWlasneI-KDK~~~a~~~~~L~E~RKlIE~~MErF 98 (576)
|.++|...-+.++.|+..++. .+|. .|..+|.+.+++...-+.|+
T Consensus 579 ~~~~~~~~l~~~~~wl~~~~~~~~~~---~~~~~~~~l~~~~~~i~~r~ 624 (675)
T 3d2f_A 579 EKTKLQGMLNKAEEWLYDEGFDSIKA---KYIAKYEELASLGNIIRGRY 624 (675)
T ss_dssp HHHHHHHHHHHHHHHTTTGGGGCCHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchhhHH---HHHHHHHHHHHHHHHHHHHH
Confidence 334444455677789975431 1233 56667777776666555555
No 166
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.01 E-value=16 Score=30.40 Aligned_cols=41 Identities=15% Similarity=0.346 Sum_probs=32.2
Q ss_pred hHHhHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHhhhccc
Q 008136 21 GVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69 (576)
Q Consensus 21 GVe~Fd~iyeKl~~a~n~nQKEKlE~DLKKEIKKLQRlRDQIKtWlasn 69 (576)
|.+...++|.++ |-=.|.||-+=..|-|.--+|||.|++..
T Consensus 17 ~~e~L~~Yy~~h--------k~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 17 DIQPLERYWAAH--------QQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCHHHHHHHHHT--------CCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHh--------cccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 345666777776 33468899999999999999999999753
No 167
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=20.99 E-value=6e+02 Score=24.98 Aligned_cols=14 Identities=14% Similarity=0.423 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q 008136 86 DARKLIEREMERFK 99 (576)
Q Consensus 86 E~RKlIE~~MErFK 99 (576)
+.|..|+..++.+|
T Consensus 125 elr~k~~~~leeLr 138 (273)
T 3s84_A 125 EFKVKIDQTVEELR 138 (273)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666666664
No 168
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=20.81 E-value=82 Score=24.78 Aligned_cols=26 Identities=31% Similarity=0.663 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhc
Q 008136 41 KEKFEADLKKEIKKLQRYRDQIKTWIQ 67 (576)
Q Consensus 41 KEKlE~DLKKEIKKLQRlRDQIKtWla 67 (576)
.|.||-||+|.=||++++-|- ..|+.
T Consensus 16 ~eeler~lrk~kk~iKklEde-NPWLG 41 (50)
T 1a92_A 16 LEELERDLRKLKKKIKKLEED-NPWLG 41 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-CTTHH
T ss_pred HHHHHHHHHHHHHHHHhhhcc-CCchh
Confidence 688999999888888888764 34543
No 169
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=20.62 E-value=2.3e+02 Score=27.27 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHhhhh
Q 008136 129 SETRDWLNNLVSELESQIDSFEAELEGL 156 (576)
Q Consensus 129 ~E~~~WL~~~IdeL~~QiE~~EaEiE~L 156 (576)
.+..+|+-+++.+|+.++..+..+.+.|
T Consensus 124 ~elfd~~~~~~~~~~~~~~~L~~e~~~l 151 (213)
T 1ik9_A 124 RELIAYALDTIAENQAKNEHLQKENERL 151 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999988888888888777
No 170
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=20.61 E-value=3.4e+02 Score=25.68 Aligned_cols=20 Identities=5% Similarity=0.177 Sum_probs=13.0
Q ss_pred HHHHHHHhHHHHHhhhcccc
Q 008136 51 EIKKLQRYRDQIKTWIQSSE 70 (576)
Q Consensus 51 EIKKLQRlRDQIKtWlasne 70 (576)
+..++...-+.++.|+..++
T Consensus 173 ~k~~i~~~l~~~~~~L~~~~ 192 (219)
T 4e81_A 173 DKTAIESALTALETALKGED 192 (219)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 33455555667788998873
No 171
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=20.45 E-value=97 Score=31.51 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=23.5
Q ss_pred HHHHHHHhHhhHHHHhhhhhc-----ccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 008136 138 LVSELESQIDSFEAELEGLTV-----KKGKTRPPRLTHLETSITRHKAHIMKLE 186 (576)
Q Consensus 138 ~IdeL~~QiE~~EaEiE~Ls~-----KK~Kk~~~rl~eLe~~ieRhk~HI~kLE 186 (576)
.+++|+.+++.++.+++.+.. ...||...++.+++..++.+.-.|...+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 301 (426)
T 1lrz_A 248 YIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGK 301 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555444421 1112223456677777777655444443
No 172
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=20.04 E-value=94 Score=25.93 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhcc
Q 008136 43 KFEADLKKEIKKLQRYRDQIKTWIQS 68 (576)
Q Consensus 43 KlE~DLKKEIKKLQRlRDQIKtWlas 68 (576)
.-...|.++|+.||+.++.|..++..
T Consensus 81 ~~~~~l~~~i~~l~~~~~~l~~~~~~ 106 (108)
T 2vz4_A 81 RQHELLSARIGKLQKMAAAVEQAMEA 106 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456899999999999999988754
Done!