Query 008137
Match_columns 576
No_of_seqs 423 out of 1396
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 19:56:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569 Permease of the major 100.0 8.4E-42 1.8E-46 360.9 44.9 451 24-559 6-472 (485)
2 TIGR01299 synapt_SV2 synaptic 100.0 1.6E-39 3.4E-44 364.0 44.9 437 18-549 156-741 (742)
3 PRK10077 xylE D-xylose transpo 100.0 6.4E-39 1.4E-43 348.7 47.6 436 24-560 7-476 (479)
4 TIGR00887 2A0109 phosphate:H+ 100.0 2.8E-39 6.1E-44 354.0 40.4 442 19-554 6-501 (502)
5 KOG0254 Predicted transporter 100.0 1.8E-38 3.9E-43 348.2 43.6 457 24-563 40-505 (513)
6 TIGR00879 SP MFS transporter, 100.0 9.4E-38 2E-42 336.9 41.5 442 25-550 24-479 (481)
7 PRK10642 proline/glycine betai 100.0 1.7E-35 3.6E-40 323.1 40.0 403 28-549 15-437 (490)
8 COG2271 UhpC Sugar phosphate p 100.0 5.3E-36 1.1E-40 303.9 26.7 407 23-542 23-435 (448)
9 PRK10406 alpha-ketoglutarate t 100.0 3.2E-34 7E-39 308.1 41.0 383 26-539 19-422 (432)
10 PRK09556 uhpT sugar phosphate 100.0 5.2E-35 1.1E-39 317.4 31.8 414 13-540 13-448 (467)
11 TIGR00898 2A0119 cation transp 100.0 2.9E-35 6.2E-40 322.5 29.9 394 50-550 110-503 (505)
12 PRK11663 regulatory protein Uh 100.0 3.3E-34 7.2E-39 308.2 37.4 408 25-547 19-430 (434)
13 PRK12307 putative sialic acid 100.0 3.2E-33 6.8E-38 299.4 41.6 396 25-543 14-411 (426)
14 PRK11551 putative 3-hydroxyphe 100.0 2E-33 4.3E-38 299.1 39.2 384 24-540 10-395 (406)
15 TIGR02332 HpaX 4-hydroxyphenyl 100.0 4.2E-34 9.1E-39 305.3 33.5 398 25-530 4-410 (412)
16 TIGR00891 2A0112 putative sial 100.0 2.8E-33 6.1E-38 296.4 39.4 391 23-523 6-398 (405)
17 COG2814 AraJ Arabinose efflux 100.0 1.9E-33 4E-38 289.3 36.4 375 25-541 9-386 (394)
18 PF00083 Sugar_tr: Sugar (and 100.0 4.8E-41 1E-45 362.7 -22.1 434 33-555 4-450 (451)
19 PRK03545 putative arabinose tr 100.0 1.5E-32 3.3E-37 291.0 38.3 376 25-542 5-381 (390)
20 PRK09952 shikimate transporter 100.0 2.9E-32 6.3E-37 293.4 40.9 390 26-544 19-435 (438)
21 PRK15075 citrate-proton sympor 100.0 3.1E-32 6.7E-37 292.9 40.4 396 26-551 12-429 (434)
22 PRK03893 putative sialic acid 100.0 5.5E-32 1.2E-36 295.7 42.1 429 24-542 15-455 (496)
23 TIGR00903 2A0129 major facilit 100.0 3.5E-32 7.5E-37 285.7 37.1 355 41-538 3-362 (368)
24 PRK09705 cynX putative cyanate 100.0 4E-32 8.7E-37 288.2 37.4 380 26-549 7-389 (393)
25 PRK11273 glpT sn-glycerol-3-ph 100.0 7.8E-32 1.7E-36 291.3 39.6 401 24-541 24-435 (452)
26 PRK14995 methyl viologen resis 100.0 2.2E-31 4.7E-36 291.1 41.2 388 26-516 3-413 (495)
27 KOG0252 Inorganic phosphate tr 100.0 7.6E-34 1.7E-38 289.1 19.8 438 24-557 36-513 (538)
28 TIGR00890 2A0111 Oxalate/Forma 100.0 4E-32 8.8E-37 284.0 32.6 360 41-534 15-375 (377)
29 TIGR00893 2A0114 d-galactonate 100.0 1.5E-31 3.3E-36 280.7 32.5 392 38-539 3-397 (399)
30 PRK03699 putative transporter; 100.0 5.9E-31 1.3E-35 279.4 34.2 376 25-539 3-378 (394)
31 TIGR00892 2A0113 monocarboxyla 100.0 1.5E-31 3.3E-36 289.2 29.0 398 22-537 12-417 (455)
32 PRK10489 enterobactin exporter 100.0 5.7E-31 1.2E-35 281.5 32.3 383 37-554 25-412 (417)
33 TIGR00712 glpT glycerol-3-phos 100.0 1.5E-30 3.3E-35 280.1 35.5 408 26-545 24-437 (438)
34 KOG0253 Synaptic vesicle trans 100.0 1.1E-30 2.4E-35 258.2 31.0 437 15-549 64-527 (528)
35 PRK10091 MFS transport protein 100.0 4.6E-30 9.9E-35 271.4 37.5 371 30-541 4-376 (382)
36 TIGR00895 2A0115 benzoate tran 100.0 2.1E-30 4.6E-35 273.3 33.3 389 20-513 8-397 (398)
37 PRK15402 multidrug efflux syst 100.0 2E-29 4.4E-34 268.5 40.2 387 24-541 8-395 (406)
38 PRK05122 major facilitator sup 100.0 5.8E-30 1.2E-34 271.9 35.3 365 29-540 15-388 (399)
39 PRK10213 nepI ribonucleoside t 100.0 4.3E-29 9.4E-34 265.1 41.6 367 27-536 18-386 (394)
40 PLN00028 nitrate transmembrane 100.0 6.2E-30 1.3E-34 278.1 35.4 385 25-540 32-432 (476)
41 PRK10504 putative transporter; 100.0 2.7E-29 5.9E-34 272.8 38.4 388 30-520 11-419 (471)
42 TIGR00711 efflux_EmrB drug res 100.0 1.8E-29 3.9E-34 274.7 35.6 386 30-517 3-411 (485)
43 TIGR00894 2A0114euk Na(+)-depe 100.0 1.6E-30 3.4E-35 282.1 27.0 402 23-539 13-448 (465)
44 KOG0255 Synaptic vesicle trans 100.0 6.4E-30 1.4E-34 281.4 31.3 396 59-557 110-508 (521)
45 PRK12382 putative transporter; 100.0 3.9E-29 8.5E-34 265.0 35.8 362 33-541 19-389 (392)
46 TIGR00710 efflux_Bcr_CflA drug 100.0 1E-28 2.3E-33 260.0 38.0 285 31-363 7-292 (385)
47 TIGR00900 2A0121 H+ Antiporter 100.0 4.9E-29 1.1E-33 259.7 34.6 355 34-518 4-365 (365)
48 PRK09874 drug efflux system pr 100.0 2.1E-28 4.5E-33 260.3 39.6 375 33-541 18-398 (408)
49 PRK03633 putative MFS family t 100.0 1.6E-28 3.5E-33 259.4 38.0 360 31-537 8-368 (381)
50 PRK10473 multidrug efflux syst 100.0 3.9E-28 8.5E-33 257.3 39.7 281 34-363 8-289 (392)
51 TIGR00881 2A0104 phosphoglycer 100.0 4.1E-30 8.8E-35 269.1 24.1 375 37-523 3-379 (379)
52 PRK15034 nitrate/nitrite trans 100.0 6.5E-28 1.4E-32 256.5 40.2 392 11-541 17-454 (462)
53 cd06174 MFS The Major Facilita 100.0 2E-28 4.4E-33 253.1 34.3 346 33-538 3-349 (352)
54 PRK15403 multidrug efflux syst 100.0 1.5E-27 3.4E-32 254.7 40.8 271 29-346 16-287 (413)
55 TIGR00883 2A0106 metabolite-pr 100.0 2.2E-28 4.8E-33 257.3 33.6 362 39-529 3-389 (394)
56 TIGR00897 2A0118 polyol permea 100.0 1.3E-27 2.8E-32 254.5 38.3 375 34-539 18-399 (402)
57 TIGR00899 2A0120 sugar efflux 100.0 9E-28 2E-32 252.1 36.5 363 36-538 4-371 (375)
58 PF07690 MFS_1: Major Facilita 100.0 1.3E-28 2.7E-33 255.6 27.4 348 35-507 2-352 (352)
59 PRK11043 putative transporter; 100.0 6.7E-27 1.5E-31 248.6 39.8 351 33-519 10-360 (401)
60 PRK10133 L-fucose transporter; 100.0 3.4E-27 7.3E-32 253.8 37.4 373 26-535 23-427 (438)
61 KOG1330 Sugar transporter/spin 100.0 8.6E-30 1.9E-34 261.0 15.8 280 23-340 27-310 (493)
62 PRK11195 lysophospholipid tran 100.0 1E-26 2.2E-31 246.9 39.7 371 34-540 8-379 (393)
63 COG2223 NarK Nitrate/nitrite t 100.0 9.6E-28 2.1E-32 244.4 29.7 385 25-541 10-401 (417)
64 PRK11102 bicyclomycin/multidru 100.0 1.3E-26 2.8E-31 244.0 36.7 269 43-357 5-274 (377)
65 PRK11010 ampG muropeptide tran 100.0 3.8E-26 8.2E-31 249.2 38.7 375 33-540 16-402 (491)
66 PRK15011 sugar efflux transpor 100.0 5.8E-26 1.3E-30 241.0 37.4 365 36-543 22-392 (393)
67 PRK11652 emrD multidrug resist 100.0 9.5E-26 2.1E-30 239.2 37.7 352 29-516 8-360 (394)
68 PRK11646 multidrug resistance 100.0 1.1E-25 2.5E-30 239.3 38.0 360 36-536 17-383 (400)
69 TIGR00885 fucP L-fucose:H+ sym 100.0 1.2E-25 2.6E-30 239.7 35.3 356 31-526 5-397 (410)
70 PRK10054 putative transporter; 100.0 9.9E-26 2.1E-30 239.4 34.5 365 35-538 13-381 (395)
71 TIGR00886 2A0108 nitrite extru 100.0 2.9E-26 6.3E-31 240.0 29.5 292 33-361 5-309 (366)
72 KOG2532 Permease of the major 100.0 7.5E-27 1.6E-31 249.8 25.1 366 57-540 66-446 (466)
73 TIGR00896 CynX cyanate transpo 100.0 1.3E-25 2.9E-30 234.7 31.5 335 44-520 15-352 (355)
74 KOG2533 Permease of the major 100.0 1.8E-26 4E-31 247.4 25.3 297 26-350 42-350 (495)
75 TIGR00805 oat sodium-independe 99.9 5.7E-26 1.2E-30 253.8 30.3 307 30-359 34-415 (633)
76 TIGR00902 2A0127 phenyl propri 99.9 2.5E-25 5.3E-30 235.3 33.4 362 34-537 9-375 (382)
77 PRK09528 lacY galactoside perm 99.9 1.1E-24 2.5E-29 233.1 32.6 374 36-542 17-404 (420)
78 TIGR00889 2A0110 nucleoside tr 99.9 1.7E-24 3.6E-29 231.7 33.5 376 35-546 8-407 (418)
79 PRK08633 2-acyl-glycerophospho 99.9 1.6E-24 3.4E-29 260.1 37.2 374 43-542 24-411 (1146)
80 PRK11902 ampG muropeptide tran 99.9 1.5E-23 3.2E-28 223.3 38.5 370 36-539 6-388 (402)
81 PRK11128 putative 3-phenylprop 99.9 3.8E-24 8.3E-29 226.2 32.9 357 38-536 13-374 (382)
82 PRK06814 acylglycerophosphoeth 99.9 3.1E-24 6.7E-29 257.4 35.4 401 31-541 17-422 (1140)
83 TIGR00882 2A0105 oligosacchari 99.9 1.7E-23 3.7E-28 222.2 32.4 373 34-539 7-393 (396)
84 PF06609 TRI12: Fungal trichot 99.9 7.3E-23 1.6E-27 222.3 35.9 168 30-203 45-212 (599)
85 TIGR00901 2A0125 AmpG-related 99.9 5.2E-23 1.1E-27 215.1 31.4 274 44-362 3-294 (356)
86 PF05977 MFS_3: Transmembrane 99.9 1.9E-22 4.1E-27 219.5 35.5 373 33-538 14-391 (524)
87 KOG2504 Monocarboxylate transp 99.9 2E-24 4.3E-29 233.9 19.4 421 22-539 39-474 (509)
88 TIGR00792 gph sugar (Glycoside 99.9 9.6E-23 2.1E-27 218.9 30.0 346 42-520 12-384 (437)
89 COG0738 FucP Fucose permease [ 99.9 2.8E-22 6.1E-27 203.1 31.3 368 30-536 14-404 (422)
90 TIGR00806 rfc RFC reduced fola 99.9 8.8E-23 1.9E-27 213.6 27.6 293 33-342 31-327 (511)
91 TIGR00924 yjdL_sub1_fam amino 99.9 3.4E-22 7.5E-27 217.1 33.2 417 32-542 13-469 (475)
92 PRK10207 dipeptide/tripeptide 99.9 1.4E-21 3E-26 212.7 34.8 174 31-208 16-194 (489)
93 KOG2615 Permease of the major 99.9 4.9E-23 1.1E-27 206.0 20.9 165 46-211 42-217 (451)
94 KOG3764 Vesicular amine transp 99.9 2.5E-24 5.5E-29 216.3 10.9 382 26-539 18-452 (464)
95 TIGR02718 sider_RhtX_FptX side 99.9 5.7E-21 1.2E-25 202.4 36.5 374 31-536 3-386 (390)
96 PTZ00207 hypothetical protein; 99.9 4E-21 8.7E-26 210.0 33.2 176 24-208 23-206 (591)
97 COG2807 CynX Cyanate permease 99.9 3.1E-20 6.7E-25 185.7 32.6 370 28-539 11-383 (395)
98 TIGR01301 GPH_sucrose GPH fami 99.9 2.5E-19 5.5E-24 192.1 37.9 408 39-546 14-476 (477)
99 PRK09584 tppB putative tripept 99.9 5.4E-20 1.2E-24 201.1 28.6 164 34-201 26-194 (500)
100 PF03825 Nuc_H_symport: Nucleo 99.9 1.7E-18 3.6E-23 183.2 34.7 375 36-544 9-398 (400)
101 KOG2325 Predicted transporter/ 99.8 4.7E-20 1E-24 194.3 19.2 424 22-539 27-473 (488)
102 PRK09669 putative symporter Ya 99.8 2.5E-18 5.4E-23 185.5 32.7 336 50-520 31-392 (444)
103 PRK10429 melibiose:sodium symp 99.8 5E-18 1.1E-22 184.7 33.0 357 36-519 13-396 (473)
104 TIGR00788 fbt folate/biopterin 99.8 1.4E-18 3.1E-23 188.4 25.0 403 30-543 27-447 (468)
105 PF11700 ATG22: Vacuole efflux 99.8 2.4E-16 5.3E-21 170.0 39.0 363 68-547 71-473 (477)
106 PRK15462 dipeptide/tripeptide 99.8 1.3E-16 2.9E-21 171.8 35.8 166 34-203 14-184 (493)
107 KOG4686 Predicted sugar transp 99.8 8.4E-20 1.8E-24 175.4 8.7 390 24-539 39-441 (459)
108 PF13347 MFS_2: MFS/sugar tran 99.8 3.4E-17 7.4E-22 175.9 28.1 338 50-520 23-388 (428)
109 PRK09848 glucuronide transport 99.8 2.1E-16 4.5E-21 170.8 33.7 349 36-519 15-391 (448)
110 PF01306 LacY_symp: LacY proto 99.8 2.6E-17 5.6E-22 171.7 25.5 379 35-546 13-405 (412)
111 KOG2563 Permease of the major 99.8 9.3E-17 2E-21 165.0 27.5 400 21-548 37-457 (480)
112 PRK11462 putative transporter; 99.8 8.6E-16 1.9E-20 166.4 35.3 270 36-355 16-305 (460)
113 KOG3626 Organic anion transpor 99.8 2E-16 4.2E-21 173.3 27.1 308 29-359 97-477 (735)
114 TIGR01272 gluP glucose/galacto 99.7 6.1E-16 1.3E-20 158.8 25.8 276 116-526 6-300 (310)
115 COG2211 MelB Na+/melibiose sym 99.7 1.6E-14 3.5E-19 152.4 34.7 355 36-520 19-400 (467)
116 COG3104 PTR2 Dipeptide/tripept 99.7 4E-14 8.6E-19 148.2 28.0 169 36-208 28-206 (498)
117 PF03137 OATP: Organic Anion T 99.7 6.9E-18 1.5E-22 184.5 -0.5 312 31-359 5-390 (539)
118 PRK10642 proline/glycine betai 99.7 7.4E-15 1.6E-19 160.6 22.3 187 43-232 264-459 (490)
119 COG2270 Permeases of the major 99.6 2.4E-13 5.2E-18 139.5 29.2 352 68-546 59-433 (438)
120 TIGR00880 2_A_01_02 Multidrug 99.5 6E-14 1.3E-18 124.7 12.8 136 73-209 4-140 (141)
121 PF03209 PUCC: PUCC protein; 99.5 6.4E-11 1.4E-15 122.1 34.9 333 55-516 6-363 (403)
122 TIGR01299 synapt_SV2 synaptic 99.5 1.2E-12 2.5E-17 147.9 21.9 140 70-211 598-737 (742)
123 TIGR00889 2A0110 nucleoside tr 99.5 1.1E-12 2.5E-17 140.4 19.4 164 47-210 226-405 (418)
124 KOG2816 Predicted transporter 99.5 1.2E-11 2.6E-16 132.5 27.0 366 29-517 22-393 (463)
125 TIGR00890 2A0111 Oxalate/Forma 99.5 1.2E-12 2.6E-17 136.7 17.3 152 46-201 222-375 (377)
126 PRK09528 lacY galactoside perm 99.5 1.1E-12 2.5E-17 140.3 17.5 141 69-210 264-406 (420)
127 PRK11551 putative 3-hydroxyphe 99.5 4.6E-12 9.9E-17 134.8 21.2 162 46-210 237-398 (406)
128 cd06174 MFS The Major Facilita 99.4 6.2E-12 1.3E-16 129.7 19.9 166 37-206 183-350 (352)
129 PRK15011 sugar efflux transpor 99.4 7.1E-12 1.5E-16 133.1 20.0 157 48-209 235-392 (393)
130 PRK09874 drug efflux system pr 99.4 8.2E-12 1.8E-16 132.7 19.3 159 46-205 236-395 (408)
131 PRK05122 major facilitator sup 99.4 1.1E-11 2.5E-16 131.5 19.9 159 46-210 233-391 (399)
132 TIGR00902 2A0127 phenyl propri 99.4 1.9E-11 4.2E-16 129.2 21.2 158 41-204 217-375 (382)
133 PF03092 BT1: BT1 family; Int 99.4 2.7E-11 5.8E-16 130.1 21.9 360 48-518 9-382 (433)
134 TIGR00899 2A0120 sugar efflux 99.4 4.3E-11 9.3E-16 125.5 21.4 154 51-209 221-375 (375)
135 PRK12382 putative transporter; 99.4 3E-11 6.6E-16 128.0 19.0 154 46-205 233-386 (392)
136 PRK10489 enterobactin exporter 99.4 6.6E-11 1.4E-15 126.6 21.4 160 48-211 242-403 (417)
137 TIGR00895 2A0115 benzoate tran 99.3 6.1E-11 1.3E-15 124.8 18.6 171 286-545 26-196 (398)
138 PF05631 DUF791: Protein of un 99.3 7.4E-10 1.6E-14 112.6 25.4 272 36-359 45-325 (354)
139 PRK09556 uhpT sugar phosphate 99.3 1.1E-10 2.4E-15 126.8 20.6 170 33-206 262-447 (467)
140 TIGR00892 2A0113 monocarboxyla 99.3 2.1E-11 4.5E-16 132.1 14.8 161 39-202 251-415 (455)
141 PRK03545 putative arabinose tr 99.3 2.2E-10 4.8E-15 121.4 22.1 149 52-206 229-378 (390)
142 PRK11663 regulatory protein Uh 99.3 5.3E-11 1.1E-15 128.2 16.6 177 279-544 25-201 (434)
143 PRK03633 putative MFS family t 99.3 2E-10 4.4E-15 121.3 20.0 154 47-207 218-371 (381)
144 TIGR02332 HpaX 4-hydroxyphenyl 99.3 1.1E-10 2.4E-15 124.9 17.9 180 278-546 9-194 (412)
145 COG2271 UhpC Sugar phosphate p 99.3 6.7E-11 1.5E-15 121.5 15.3 182 274-544 26-209 (448)
146 TIGR00883 2A0106 metabolite-pr 99.3 4.3E-11 9.4E-16 125.7 14.4 158 38-198 228-391 (394)
147 PRK10054 putative transporter; 99.3 1.3E-10 2.7E-15 123.6 18.0 175 282-545 12-186 (395)
148 TIGR00897 2A0118 polyol permea 99.3 4.9E-10 1.1E-14 119.3 22.2 164 38-207 231-400 (402)
149 PRK09952 shikimate transporter 99.3 4.6E-10 1E-14 121.0 21.5 160 48-210 269-435 (438)
150 TIGR00893 2A0114 d-galactonate 99.3 4.6E-10 1E-14 117.5 20.8 167 34-204 220-395 (399)
151 PRK03699 putative transporter; 99.2 1.7E-10 3.6E-15 122.5 17.3 170 36-210 212-382 (394)
152 TIGR00879 SP MFS transporter, 99.2 1.1E-10 2.4E-15 125.8 16.1 180 28-211 283-474 (481)
153 PRK11128 putative 3-phenylprop 99.2 5.1E-10 1.1E-14 118.4 20.9 151 48-204 224-375 (382)
154 TIGR00710 efflux_Bcr_CflA drug 99.2 1.7E-10 3.7E-15 121.3 17.0 172 287-547 15-186 (385)
155 PRK09705 cynX putative cyanate 99.2 3E-10 6.5E-15 120.7 18.7 164 43-211 219-385 (393)
156 TIGR00881 2A0104 phosphoglycer 99.2 8E-11 1.7E-15 123.0 13.9 165 292-545 10-175 (379)
157 PF01770 Folate_carrier: Reduc 99.2 5.3E-09 1.2E-13 109.1 26.2 308 30-347 6-319 (412)
158 TIGR00900 2A0121 H+ Antiporter 99.2 6.4E-10 1.4E-14 115.6 19.3 130 50-182 232-363 (365)
159 PRK03893 putative sialic acid 99.2 4.6E-10 1E-14 122.7 18.9 146 48-197 294-442 (496)
160 PRK10077 xylE D-xylose transpo 99.2 9.6E-10 2.1E-14 119.6 21.0 164 44-211 286-461 (479)
161 TIGR00891 2A0112 putative sial 99.2 5.8E-10 1.3E-14 117.9 17.5 141 50-193 259-401 (405)
162 PF11700 ATG22: Vacuole efflux 99.2 2.1E-09 4.6E-14 116.3 22.0 160 48-210 301-470 (477)
163 PF05977 MFS_3: Transmembrane 99.2 1.9E-09 4.2E-14 117.9 21.2 156 44-203 233-389 (524)
164 PRK10473 multidrug efflux syst 99.2 5.2E-10 1.1E-14 118.5 16.3 179 279-546 5-183 (392)
165 PRK10213 nepI ribonucleoside t 99.2 8.4E-10 1.8E-14 117.3 17.9 159 298-545 41-199 (394)
166 PRK11010 ampG muropeptide tran 99.2 8.2E-09 1.8E-13 113.0 25.5 155 52-210 246-405 (491)
167 TIGR00711 efflux_EmrB drug res 99.2 2.1E-10 4.5E-15 124.9 12.9 177 281-546 6-182 (485)
168 PRK11273 glpT sn-glycerol-3-ph 99.2 2.1E-09 4.6E-14 116.3 20.4 166 36-205 260-432 (452)
169 TIGR00882 2A0105 oligosacchari 99.1 2E-09 4.3E-14 114.4 19.2 134 69-203 256-390 (396)
170 PRK10091 MFS transport protein 99.1 1E-09 2.2E-14 116.1 16.5 164 293-545 19-182 (382)
171 PRK10504 putative transporter; 99.1 1.1E-09 2.3E-14 119.1 17.1 175 281-544 14-188 (471)
172 PRK12307 putative sialic acid 99.1 4.8E-09 1E-13 112.3 21.7 138 48-189 250-389 (426)
173 PRK15462 dipeptide/tripeptide 99.1 3.2E-09 7E-14 114.9 19.8 165 287-538 19-186 (493)
174 TIGR00712 glpT glycerol-3-phos 99.1 8.6E-10 1.9E-14 118.9 14.6 181 279-545 29-210 (438)
175 TIGR00886 2A0108 nitrite extru 99.1 3.2E-09 6.9E-14 111.0 18.5 174 282-544 6-191 (366)
176 TIGR00903 2A0129 major facilit 99.1 1.3E-09 2.8E-14 114.8 15.5 165 292-546 6-170 (368)
177 TIGR00924 yjdL_sub1_fam amino 99.1 3.9E-09 8.4E-14 115.0 19.5 168 282-537 15-188 (475)
178 PRK11646 multidrug resistance 99.1 2.5E-09 5.5E-14 113.9 17.7 168 288-544 21-188 (400)
179 PLN00028 nitrate transmembrane 99.1 4.3E-09 9.3E-14 114.8 19.7 168 286-543 45-221 (476)
180 COG2814 AraJ Arabinose efflux 99.1 3.3E-09 7.1E-14 110.2 17.7 168 286-542 22-189 (394)
181 TIGR00792 gph sugar (Glycoside 99.1 2.1E-09 4.4E-14 115.5 16.8 114 70-183 260-381 (437)
182 TIGR02718 sider_RhtX_FptX side 99.1 5.6E-09 1.2E-13 110.6 19.8 151 49-203 228-386 (390)
183 PRK11652 emrD multidrug resist 99.1 3.1E-09 6.6E-14 112.7 17.4 164 294-546 25-188 (394)
184 PRK11102 bicyclomycin/multidru 99.1 1.3E-09 2.9E-14 114.5 14.2 163 294-545 8-170 (377)
185 PRK14995 methyl viologen resis 99.1 1.4E-09 3.1E-14 119.1 15.0 178 279-545 8-186 (495)
186 PF07690 MFS_1: Major Facilita 99.1 8E-10 1.7E-14 114.4 12.1 165 292-545 11-176 (352)
187 PRK15403 multidrug efflux syst 99.1 3E-09 6.5E-14 113.8 16.9 159 299-546 38-196 (413)
188 TIGR00887 2A0109 phosphate:H+ 99.1 2.7E-09 5.7E-14 117.2 16.7 164 48-211 307-492 (502)
189 PRK10406 alpha-ketoglutarate t 99.1 9.3E-09 2E-13 110.6 20.5 160 46-209 260-425 (432)
190 PRK15075 citrate-proton sympor 99.1 5.6E-09 1.2E-13 112.4 18.6 140 42-184 251-396 (434)
191 TIGR00898 2A0119 cation transp 99.0 5.1E-09 1.1E-13 114.9 17.8 137 72-211 360-498 (505)
192 KOG3098 Uncharacterized conser 99.0 2E-07 4.3E-12 99.0 28.8 107 73-180 56-162 (461)
193 PRK15402 multidrug efflux syst 99.0 3E-08 6.4E-13 105.7 22.4 150 49-203 235-390 (406)
194 PF01306 LacY_symp: LacY proto 99.0 1.7E-08 3.6E-13 106.0 19.5 168 37-210 233-403 (412)
195 KOG2504 Monocarboxylate transp 99.0 3.5E-09 7.7E-14 115.3 14.4 177 29-208 298-476 (509)
196 TIGR00894 2A0114euk Na(+)-depe 99.0 3.7E-09 8E-14 114.8 14.2 149 310-544 73-222 (465)
197 PRK11902 ampG muropeptide tran 99.0 3.2E-08 7E-13 105.3 21.0 148 53-208 234-390 (402)
198 PRK11043 putative transporter; 99.0 1.1E-08 2.3E-13 108.8 17.2 154 300-542 29-182 (401)
199 PRK08633 2-acyl-glycerophospho 99.0 1.4E-08 3.1E-13 122.5 19.9 148 49-199 252-401 (1146)
200 TIGR00896 CynX cyanate transpo 99.0 6.2E-09 1.3E-13 108.7 14.6 139 46-188 214-354 (355)
201 PF03825 Nuc_H_symport: Nucleo 99.0 4.6E-08 1E-12 103.8 20.4 172 36-210 214-398 (400)
202 PRK10207 dipeptide/tripeptide 99.0 3.5E-08 7.5E-13 107.8 19.7 159 289-534 26-187 (489)
203 COG2270 Permeases of the major 99.0 2E-08 4.3E-13 103.7 16.4 178 29-210 254-431 (438)
204 PF06813 Nodulin-like: Nodulin 99.0 3.6E-08 7.8E-13 97.0 17.7 178 27-211 1-185 (250)
205 TIGR01272 gluP glucose/galacto 98.9 6.7E-08 1.4E-12 99.3 19.8 156 34-196 145-303 (310)
206 TIGR00880 2_A_01_02 Multidrug 98.9 6E-09 1.3E-13 92.2 10.3 135 322-544 7-141 (141)
207 COG0477 ProP Permeases of the 98.9 6.4E-08 1.4E-12 96.4 18.9 161 37-200 10-177 (338)
208 PRK06814 acylglycerophosphoeth 98.9 3.4E-08 7.4E-13 119.2 19.5 152 45-199 241-413 (1140)
209 TIGR00901 2A0125 AmpG-related 98.9 4.9E-08 1.1E-12 101.9 17.6 123 41-166 221-355 (356)
210 COG2223 NarK Nitrate/nitrite t 98.9 3.4E-08 7.3E-13 101.9 15.8 178 278-543 15-195 (417)
211 KOG0569 Permease of the major 98.9 1E-07 2.2E-12 102.1 20.1 182 25-211 266-458 (485)
212 PRK09584 tppB putative tripept 98.9 5.4E-08 1.2E-12 106.7 18.3 165 284-535 28-195 (500)
213 KOG1330 Sugar transporter/spin 98.9 1.4E-09 3E-14 113.0 5.2 159 306-552 61-220 (493)
214 PRK09848 glucuronide transport 98.9 1.3E-07 2.7E-12 102.3 20.3 132 47-181 246-387 (448)
215 PRK11195 lysophospholipid tran 98.9 1.9E-07 4.2E-12 99.2 21.0 141 55-199 232-373 (393)
216 PRK15034 nitrate/nitrite trans 98.9 8.4E-08 1.8E-12 102.9 17.9 183 277-544 34-235 (462)
217 TIGR00885 fucP L-fucose:H+ sym 98.8 1.1E-07 2.4E-12 101.6 17.8 159 293-537 19-203 (410)
218 KOG3762 Predicted transporter 98.8 3.2E-08 6.9E-13 104.4 12.4 161 290-539 384-545 (618)
219 TIGR00926 2A1704 Peptide:H+ sy 98.8 1.8E-06 3.9E-11 96.8 27.1 153 50-205 9-179 (654)
220 TIGR00805 oat sodium-independe 98.8 5.4E-08 1.2E-12 109.4 14.8 219 281-544 37-283 (633)
221 PF13347 MFS_2: MFS/sugar tran 98.8 7.2E-08 1.6E-12 103.6 14.6 145 35-182 231-384 (428)
222 KOG2615 Permease of the major 98.8 3.4E-08 7.3E-13 100.2 10.6 147 311-546 66-218 (451)
223 PRK10133 L-fucose transporter; 98.7 5.9E-07 1.3E-11 96.9 19.0 139 56-200 287-425 (438)
224 PRK10429 melibiose:sodium symp 98.7 2.2E-07 4.8E-12 101.2 15.9 136 43-181 245-392 (473)
225 KOG0637 Sucrose transporter an 98.7 1.4E-07 3E-12 98.1 11.9 136 41-179 44-202 (498)
226 TIGR01301 GPH_sucrose GPH fami 98.7 5.2E-07 1.1E-11 97.4 16.4 182 292-545 19-222 (477)
227 TIGR00769 AAA ADP/ATP carrier 98.7 0.00039 8.4E-09 75.0 38.2 175 29-207 7-227 (472)
228 KOG4686 Predicted sugar transp 98.6 4.2E-07 9E-12 88.7 13.1 176 27-209 265-444 (459)
229 PTZ00207 hypothetical protein; 98.6 1.2E-06 2.5E-11 96.8 17.8 165 293-543 43-207 (591)
230 PRK09669 putative symporter Ya 98.6 1.4E-06 2.9E-11 94.2 17.6 114 70-183 267-389 (444)
231 PF06963 FPN1: Ferroportin1 (F 98.6 0.00023 5E-09 75.9 33.8 310 32-363 5-343 (432)
232 KOG0255 Synaptic vesicle trans 98.6 3.9E-07 8.5E-12 100.5 13.6 143 311-545 116-258 (521)
233 COG2807 CynX Cyanate permease 98.6 3E-06 6.6E-11 86.0 18.3 175 21-203 204-380 (395)
234 KOG3764 Vesicular amine transp 98.6 5.4E-08 1.2E-12 99.3 5.7 150 311-548 104-254 (464)
235 PF02487 CLN3: CLN3 protein; 98.6 8.4E-06 1.8E-10 85.3 22.1 135 70-209 62-197 (402)
236 KOG0253 Synaptic vesicle trans 98.6 2.9E-07 6.2E-12 93.0 9.7 131 78-211 392-522 (528)
237 KOG2532 Permease of the major 98.5 1.4E-06 3.1E-11 93.9 15.0 148 310-543 70-218 (466)
238 PF06609 TRI12: Fungal trichot 98.5 5.9E-07 1.3E-11 98.7 11.6 153 297-540 64-216 (599)
239 KOG3574 Acetyl-CoA transporter 98.5 2.1E-05 4.6E-10 79.9 21.0 146 28-179 30-192 (510)
240 TIGR00806 rfc RFC reduced fola 98.5 5.1E-06 1.1E-10 88.3 17.4 157 296-544 45-205 (511)
241 KOG3762 Predicted transporter 98.4 1.1E-06 2.3E-11 93.1 9.8 165 39-207 381-546 (618)
242 PRK11462 putative transporter; 98.4 5.3E-05 1.1E-09 82.3 22.3 136 43-181 242-386 (460)
243 PF03209 PUCC: PUCC protein; 98.4 4.6E-05 1E-09 79.2 20.1 190 9-204 192-394 (403)
244 TIGR00788 fbt folate/biopterin 98.3 3.6E-06 7.8E-11 91.6 12.7 150 57-209 281-447 (468)
245 KOG0254 Predicted transporter 98.3 7E-06 1.5E-10 90.5 13.4 140 316-545 92-233 (513)
246 COG2211 MelB Na+/melibiose sym 98.3 3E-05 6.6E-10 82.6 17.4 143 36-181 243-395 (467)
247 PF06779 DUF1228: Protein of u 98.3 5.2E-06 1.1E-10 67.0 8.6 81 41-124 4-84 (85)
248 KOG4332 Predicted sugar transp 98.2 1.6E-05 3.4E-10 77.2 11.9 94 52-149 60-154 (454)
249 COG3104 PTR2 Dipeptide/tripept 98.2 2.2E-05 4.8E-10 83.1 14.0 146 310-541 58-206 (498)
250 KOG3810 Micronutrient transpor 98.2 9.6E-05 2.1E-09 74.5 17.3 253 72-343 47-301 (433)
251 COG0738 FucP Fucose permease [ 98.2 4.6E-05 9.9E-10 78.7 15.5 162 33-201 240-402 (422)
252 PF05978 UNC-93: Ion channel r 98.2 8.7E-05 1.9E-09 67.7 15.3 109 71-180 41-149 (156)
253 KOG0252 Inorganic phosphate tr 98.1 4.9E-06 1.1E-10 86.7 7.7 180 29-212 304-502 (538)
254 KOG2533 Permease of the major 98.1 2E-05 4.4E-10 85.4 12.6 90 457-546 137-232 (495)
255 PF00083 Sugar_tr: Sugar (and 98.1 7.5E-08 1.6E-12 104.0 -7.3 145 314-544 47-194 (451)
256 PF06813 Nodulin-like: Nodulin 98.1 6E-05 1.3E-09 74.3 13.5 140 292-516 17-157 (250)
257 PF03219 TLC: TLC ATP/ADP tran 98.0 0.019 4.1E-07 62.5 31.8 156 22-181 17-205 (491)
258 COG3202 ATP/ADP translocase [E 97.9 0.048 1E-06 58.2 33.9 180 23-206 21-243 (509)
259 KOG2816 Predicted transporter 97.9 0.00014 3.1E-09 78.3 13.8 78 473-550 131-208 (463)
260 PF13000 Acatn: Acetyl-coenzym 97.9 0.00075 1.6E-08 71.6 18.4 143 33-180 4-178 (544)
261 KOG2325 Predicted transporter/ 97.8 0.00011 2.3E-09 78.7 10.7 162 302-548 59-236 (488)
262 PF00854 PTR2: POT family; In 97.8 0.0015 3.2E-08 68.9 18.9 108 98-206 2-121 (372)
263 PF05631 DUF791: Protein of un 97.7 0.00088 1.9E-08 68.7 15.1 65 294-359 51-115 (354)
264 PF12832 MFS_1_like: MFS_1 lik 97.7 0.00022 4.7E-09 56.9 8.1 69 36-107 7-75 (77)
265 TIGR00939 2a57 Equilibrative N 97.6 0.014 3E-07 62.8 23.3 90 119-213 105-201 (437)
266 KOG1237 H+/oligopeptide sympor 97.6 0.0081 1.8E-07 66.6 22.0 155 47-205 56-242 (571)
267 TIGR00926 2A1704 Peptide:H+ sy 97.4 0.0027 5.9E-08 71.6 15.3 158 302-539 12-180 (654)
268 KOG3626 Organic anion transpor 97.4 0.0014 3.1E-08 73.1 12.6 230 281-548 101-349 (735)
269 PF12832 MFS_1_like: MFS_1 lik 97.2 0.0023 5E-08 51.0 8.8 67 285-352 8-74 (77)
270 PF03137 OATP: Organic Anion T 97.2 7.7E-05 1.7E-09 82.2 -0.6 71 296-367 22-92 (539)
271 KOG1479 Nucleoside transporter 97.2 0.078 1.7E-06 55.6 21.5 175 38-213 27-209 (406)
272 PF03092 BT1: BT1 family; Int 96.8 0.013 2.8E-07 63.1 12.2 67 477-544 109-178 (433)
273 PF02487 CLN3: CLN3 protein; 96.7 0.039 8.5E-07 58.1 15.1 139 33-179 251-394 (402)
274 PRK03612 spermidine synthase; 96.7 0.13 2.8E-06 56.7 19.2 153 40-196 25-186 (521)
275 PF07672 MFS_Mycoplasma: Mycop 96.5 0.02 4.4E-07 56.1 10.3 56 152-207 2-61 (267)
276 PF05978 UNC-93: Ion channel r 96.5 0.057 1.2E-06 49.3 12.7 109 317-514 41-149 (156)
277 KOG2563 Permease of the major 96.4 0.041 8.8E-07 58.1 12.3 53 311-363 77-129 (480)
278 KOG3097 Predicted membrane pro 96.1 1.8 4E-05 44.0 22.5 101 77-178 68-183 (390)
279 TIGR00769 AAA ADP/ATP carrier 96.1 0.21 4.6E-06 54.1 16.6 42 474-515 149-190 (472)
280 KOG3098 Uncharacterized conser 95.8 0.91 2E-05 48.9 19.4 141 36-177 247-409 (461)
281 PF06963 FPN1: Ferroportin1 (F 95.7 0.67 1.5E-05 49.7 18.0 149 30-181 259-417 (432)
282 COG0477 ProP Permeases of the 95.5 0.43 9.2E-06 46.8 14.9 58 295-352 20-78 (338)
283 KOG0637 Sucrose transporter an 95.0 0.034 7.3E-07 58.7 5.2 87 277-365 33-124 (498)
284 PF01770 Folate_carrier: Reduc 94.9 0.38 8.3E-06 50.9 12.7 57 307-363 35-91 (412)
285 PF06779 DUF1228: Protein of u 94.0 0.47 1E-05 38.4 8.7 71 294-365 9-79 (85)
286 PF01733 Nucleoside_tran: Nucl 92.9 0.024 5.1E-07 58.2 -0.7 37 473-509 267-303 (309)
287 PRK03612 spermidine synthase; 92.8 3.7 7.9E-05 45.4 16.2 47 488-534 143-190 (521)
288 TIGR00939 2a57 Equilibrative N 91.6 2.3 5E-05 45.8 12.6 112 67-179 307-431 (437)
289 KOG1237 H+/oligopeptide sympor 91.5 10 0.00023 42.3 17.9 171 302-538 63-242 (571)
290 PF00854 PTR2: POT family; In 91.2 0.44 9.6E-06 50.1 6.6 83 456-539 36-121 (372)
291 PF03219 TLC: TLC ATP/ADP tran 91.1 3.5 7.6E-05 45.0 13.4 42 474-515 164-205 (491)
292 KOG1479 Nucleoside transporter 90.1 9.5 0.00021 40.3 14.9 58 278-337 19-76 (406)
293 COG3202 ATP/ADP translocase [E 88.7 18 0.00039 39.2 15.8 42 474-515 168-209 (509)
294 KOG4332 Predicted sugar transp 87.4 8.9 0.00019 38.2 11.6 133 70-203 285-426 (454)
295 KOG3880 Predicted small molecu 86.9 0.46 1E-05 47.8 2.6 131 70-207 65-198 (409)
296 KOG4830 Predicted sugar transp 84.8 0.081 1.8E-06 51.6 -3.7 66 32-100 20-94 (412)
297 PF13000 Acatn: Acetyl-coenzym 84.6 4.4 9.6E-05 43.8 8.7 67 282-349 5-76 (544)
298 PF06912 DUF1275: Protein of u 81.4 50 0.0011 31.4 17.7 38 147-184 153-190 (209)
299 KOG2601 Iron transporter [Inor 81.4 15 0.00033 38.3 10.6 163 33-199 31-217 (503)
300 KOG3810 Micronutrient transpor 80.7 19 0.00041 37.4 11.0 103 62-164 266-370 (433)
301 KOG3880 Predicted small molecu 79.3 8.4 0.00018 39.1 7.9 141 32-179 254-401 (409)
302 PF07672 MFS_Mycoplasma: Mycop 77.4 49 0.0011 32.9 12.5 72 70-141 144-225 (267)
303 PF01733 Nucleoside_tran: Nucl 70.9 1.6 3.5E-05 44.6 0.6 107 71-178 186-306 (309)
304 COG5336 Uncharacterized protei 70.7 13 0.00029 31.2 5.7 38 70-107 45-83 (116)
305 COG4262 Predicted spermidine s 70.5 1.4E+02 0.0031 31.1 15.6 94 51-147 29-132 (508)
306 KOG3574 Acetyl-CoA transporter 70.3 63 0.0014 34.1 11.7 62 281-349 35-104 (510)
307 KOG2601 Iron transporter [Inor 54.8 1.6E+02 0.0034 31.2 11.2 45 492-536 177-221 (503)
308 COG3619 Predicted membrane pro 53.6 2.2E+02 0.0048 27.7 18.5 169 27-198 10-208 (226)
309 COG1230 CzcD Co/Zn/Cd efflux s 51.1 2.8E+02 0.0061 28.1 13.2 78 25-111 21-101 (296)
310 KOG2881 Predicted membrane pro 48.6 1.5E+02 0.0033 29.3 9.5 25 331-355 258-282 (294)
311 TIGR01667 YCCS_YHJK integral m 43.8 1.6E+02 0.0035 33.9 10.5 43 95-137 55-98 (701)
312 COG1079 Uncharacterized ABC-ty 40.3 4.2E+02 0.0091 27.0 13.3 96 80-179 20-117 (304)
313 PF11947 DUF3464: Protein of u 35.4 85 0.0019 28.4 5.3 36 470-505 110-145 (153)
314 PF11151 DUF2929: Protein of u 34.6 1.9E+02 0.0041 21.4 6.6 46 164-210 10-55 (57)
315 TIGR01666 YCCS hypothetical me 32.1 4E+02 0.0087 30.7 11.3 50 88-137 44-98 (704)
316 PF11947 DUF3464: Protein of u 31.6 1.5E+02 0.0033 26.9 6.2 79 90-171 57-145 (153)
317 COG5336 Uncharacterized protei 31.3 2E+02 0.0043 24.4 6.3 53 484-537 36-88 (116)
318 PF03547 Mem_trans: Membrane t 31.1 2.4E+02 0.0053 29.4 9.0 174 320-576 2-181 (385)
319 COG1288 Predicted membrane pro 30.7 7.1E+02 0.015 26.8 14.5 110 95-212 132-246 (481)
320 PF05297 Herpes_LMP1: Herpesvi 30.0 14 0.0003 36.6 -0.7 12 535-546 179-190 (381)
321 PRK10263 DNA translocase FtsK; 29.1 2.9E+02 0.0063 34.0 9.7 18 167-184 142-159 (1355)
322 PF02990 EMP70: Endomembrane p 28.9 7E+02 0.015 27.6 12.3 22 321-342 305-326 (521)
323 PLN02332 membrane bound O-acyl 28.4 3.4E+02 0.0073 29.6 9.6 31 95-125 339-369 (465)
324 PF06570 DUF1129: Protein of u 26.4 5.6E+02 0.012 24.3 11.2 22 186-207 176-197 (206)
325 PF02632 BioY: BioY family; I 26.1 2.8E+02 0.0061 24.9 7.1 26 73-98 59-84 (148)
326 COG4769 Predicted membrane pro 25.3 1.6E+02 0.0034 27.0 5.2 52 76-133 82-133 (181)
327 TIGR02230 ATPase_gene1 F0F1-AT 25.3 3.2E+02 0.007 22.9 6.7 29 82-110 57-86 (100)
328 COG1457 CodB Purine-cytosine p 24.1 9.3E+02 0.02 26.0 18.1 51 146-196 11-61 (442)
329 PRK10263 DNA translocase FtsK; 23.9 4.7E+02 0.01 32.3 10.1 21 322-342 61-81 (1355)
330 PRK11588 hypothetical protein; 23.7 1E+03 0.022 26.3 17.6 49 87-135 136-186 (506)
331 TIGR02230 ATPase_gene1 F0F1-AT 23.2 4.2E+02 0.0092 22.2 7.0 28 328-355 58-85 (100)
332 PRK15097 cytochrome d terminal 22.7 4.9E+02 0.011 28.7 9.3 66 48-116 77-142 (522)
333 PRK13629 threonine/serine tran 22.3 1E+03 0.022 25.8 15.8 40 151-196 19-58 (443)
334 PF06645 SPC12: Microsomal sig 20.4 1.4E+02 0.003 23.6 3.5 70 152-222 4-75 (76)
335 PF12805 FUSC-like: FUSC-like 20.3 8.4E+02 0.018 24.3 10.1 38 100-137 2-40 (284)
336 PRK15035 cytochrome bd-II oxid 20.2 7.6E+02 0.016 27.2 10.1 66 48-116 77-142 (514)
No 1
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.4e-42 Score=360.90 Aligned_cols=451 Identities=31% Similarity=0.546 Sum_probs=381.1
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhh--------c--cchh-hhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008137 24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDF--------R--DVEK-KTWLQELIVSMAVAGAIFGAGFGGWIND 92 (576)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~--------~--~~~~-~~~~~g~i~s~~~~~~~i~~~~~G~l~d 92 (576)
+++........+++.+-.+|....+++..+.+.+-. + .+++ -....+.+.+++.+|.++|+++.|+++|
T Consensus 6 t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~ 85 (485)
T KOG0569|consen 6 TRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLAD 85 (485)
T ss_pred cHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667777888899888888776655433 3 2222 1235599999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHH
Q 008137 93 RFGRKISLLGADVLFFIGAIIMAIA---PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQ 169 (576)
Q Consensus 93 r~Grr~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~ 169 (576)
|+|||..+.++.++..++.+++.++ +++.+++++|++.|+..|......+.|+.|..|++.||......+.+..+|.
T Consensus 86 ~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ 165 (485)
T KOG0569|consen 86 RFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGI 165 (485)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHH
Confidence 9999999999999988888877664 6899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-hcCCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhh-cCCHHHHHHHHHHhCCchhhhHHHHHHHHHH
Q 008137 170 FLAYLINLA-FTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYR-QNKVDEARAILEKIYPADQVEEEVNLLKQSV 247 (576)
Q Consensus 170 ~l~~~l~~~-l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~-~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 247 (576)
.++..++.. +......|++.+.+..+++++.++.+.++||||+|+.. +++.++|++.++..++.++.+.+.++..+..
T Consensus 166 ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~ 245 (485)
T KOG0569|consen 166 LLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREI 245 (485)
T ss_pred HHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 999766643 33333359999999999999999999999999999988 8999999999999999877666555544433
Q ss_pred HhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHH
Q 008137 248 ENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNA 327 (576)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (576)
+++...+ +...+++++++++..|+.....+.+...+++.+.+...+|...++++.|. +...+.......++..+
T Consensus 246 ~~~~~~~-----~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~-~~~~a~~an~~~g~v~~ 319 (485)
T KOG0569|consen 246 EEEELEK-----KKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGF-TPEEAQYANLGIGIVNL 319 (485)
T ss_pred HHhcccc-----ccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 3322221 11167889999999999999999999999999999999999999999997 67777888888899999
Q ss_pred HHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCccccccccc
Q 008137 328 LGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLK 407 (576)
Q Consensus 328 ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (576)
+.++++.++.||+|||++++.++.++.++.+++...........
T Consensus 320 ~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~------------------------------------ 363 (485)
T KOG0569|consen 320 LSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG------------------------------------ 363 (485)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------------------------
Confidence 99999999999999999999999999999888877655432210
Q ss_pred ccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccc
Q 008137 408 AKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRY 487 (576)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 487 (576)
+| ..+..+++.+.+..+|++|.+|+.+.+.+|++|++.
T Consensus 364 ----------------------------------~~--------~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~ 401 (485)
T KOG0569|consen 364 ----------------------------------SW--------LSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA 401 (485)
T ss_pred ----------------------------------hH--------HHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc
Confidence 01 124567888999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhCC
Q 008137 488 RGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVEKMLETG 559 (576)
Q Consensus 488 rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (576)
|..+++.....+++++++....+..+.+..|. ..|+++.+.+++..+..++.+||||+|+.+|+.+..++.
T Consensus 402 R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 402 RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999998 689999999999999999999999999999988877765
No 2
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=100.00 E-value=1.6e-39 Score=364.00 Aligned_cols=437 Identities=20% Similarity=0.217 Sum_probs=331.0
Q ss_pred HHHhhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCch
Q 008137 18 WNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRK 97 (576)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr 97 (576)
.++....++.|.++++++++.+..+++...++.++|.+.++++.+..+. +++.+++.++.+++++++|+++||+|||
T Consensus 156 l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~---g~l~s~~~lG~iiG~li~G~LsDR~GRR 232 (742)
T TIGR01299 156 IQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGK---GMLGLIVYLGMMVGAFFWGGLADKLGRK 232 (742)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 3445567788999999999999999999999999999999999988887 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008137 98 ISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINL 177 (576)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~ 177 (576)
+++++++++++++++++++++++++++++|++.|++.|+..+...++++|++|+++|+++++++.++..+|.++++.++.
T Consensus 233 ~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~ 312 (742)
T TIGR01299 233 QCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAW 312 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred HhcCCC------------chhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhh----HHH-
Q 008137 178 AFTKAP------------GTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVE----EEV- 240 (576)
Q Consensus 178 ~l~~~~------------~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~----~~~- 240 (576)
.+.... .+||+.+++.+++.++.++.++++||+|+|+..+++.+++.+.+++++..+... .+.
T Consensus 313 ~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~ 392 (742)
T TIGR01299 313 AIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVF 392 (742)
T ss_pred HHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHH
Confidence 654321 259999999998888887778889999999999999999999998887654321 110
Q ss_pred --HHHHHHHHhh---h-hhhc------------ccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHH
Q 008137 241 --NLLKQSVENE---K-AEEG------------LIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPT 302 (576)
Q Consensus 241 --~~~~~~~~~~---~-~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (576)
+..+...... . .... ......+.+++++++.+ ++++.+....+++. ...+++.+..|+|.
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~-~~~~tl~l~~~wf~-~~~~yygl~~w~P~ 470 (742)
T TIGR01299 393 SVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPE-VREITIKLMGVWFT-LSFGYYGLSVWFPD 470 (742)
T ss_pred HHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCcc-HHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 0111000000 0 0000 00011223455555554 45555555555544 44567888888897
Q ss_pred HHHhh------------------------------------------cC-----C---c---------------------
Q 008137 303 IVQFA------------------------------------------GF-----A---S--------------------- 311 (576)
Q Consensus 303 ~~~~~------------------------------------------~~-----~---~--------------------- 311 (576)
++... +. . +
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 550 (742)
T TIGR01299 471 MIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCT 550 (742)
T ss_pred HHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccc
Confidence 75431 00 0 0
Q ss_pred -------------------------------------------hhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHH
Q 008137 312 -------------------------------------------KSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIV 348 (576)
Q Consensus 312 -------------------------------------------~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~ 348 (576)
.........+..++.+++.+++|+++||+|||+++..
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~ 630 (742)
T TIGR01299 551 FIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAG 630 (742)
T ss_pred hhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 0012333456667889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccc
Q 008137 349 SMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLID 428 (576)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (576)
++++.+++.+++.+....
T Consensus 631 ~~~lsai~~ll~~~~~s~-------------------------------------------------------------- 648 (742)
T TIGR01299 631 SMVLSCISCFFLSFGNSE-------------------------------------------------------------- 648 (742)
T ss_pred HHHHHHHHHHHHHHHccH--------------------------------------------------------------
Confidence 888888887766544210
Q ss_pred ccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHH
Q 008137 429 EKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSL 508 (576)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~ 508 (576)
+..+++.+++.++. .+..+....+++|++|++.|++++|+.++.+.+|++++|+
T Consensus 649 -------------------------~~ll~~~~l~g~~~-~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~ 702 (742)
T TIGR01299 649 -------------------------SAMIALLCLFGGLS-IAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGIL 702 (742)
T ss_pred -------------------------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222333222 2344566788999999999999999999999999999999
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCCH
Q 008137 509 TFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAF 549 (576)
Q Consensus 509 ~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 549 (576)
+.+.+.+. +...+|++.+++.+++.++.+ ++|||+++.+
T Consensus 703 i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~l 741 (742)
T TIGR01299 703 IFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTRGQVL 741 (742)
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCccccc
Confidence 99988775 455678888888777776655 4699998653
No 3
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=100.00 E-value=6.4e-39 Score=348.71 Aligned_cols=436 Identities=33% Similarity=0.584 Sum_probs=328.7
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhh--------ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 008137 24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDF--------RDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFG 95 (576)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~G 95 (576)
.++..+.+.+++++.+..++|...+++..|.+.++| +.+..+. +++.+++.++..++++++|+++||+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~ig~~~~~~~~G~l~dr~G 83 (479)
T PRK10077 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLL---GFCVASALIGCIIGGALGGYCSNRFG 83 (479)
T ss_pred chHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677778888899999999999999999999988 5555555 99999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHhc------------chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHH
Q 008137 96 RKISLLGADVLFFIGAIIMAIA------------PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGF 163 (576)
Q Consensus 96 rr~~~~~~~~~~~i~~~~~~~~------------~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~ 163 (576)
||++++++.+++.++.++++++ +.++.++++|+++|++.|+..+...++++|++|+++|++++++.+.
T Consensus 84 rr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~ 163 (479)
T PRK10077 84 RRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQF 163 (479)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHH
Confidence 9999999999999999888863 2356788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc--------CCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchh
Q 008137 164 LITGGQFLAYLINLAFT--------KAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQ 235 (576)
Q Consensus 164 ~~~~G~~l~~~l~~~l~--------~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~ 235 (576)
+..+|.++++.+++.+. +.. +||+.|++.+++.++..+..+++||+|+++..+++.+++++..++....+.
T Consensus 164 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~-gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (479)
T PRK10077 164 AIIFGQLVVYFVNYFIARSGDASWLNTD-GWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL 242 (479)
T ss_pred HHHHHHHHHHHHHHHHhccCcccccccC-ChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh
Confidence 99999999988776553 223 499999998888887776677899999988777777777666665544332
Q ss_pred hhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHH
Q 008137 236 VEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTA 315 (576)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (576)
.....+.......++. ...+..+. ..............+.+..+++...++.|.+.++.+. +....
T Consensus 243 ~~~~~~~~~~~~~~~~-----------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~-~~~~~ 308 (479)
T PRK10077 243 ATQALQEIKHSLDHGR-----------KTGGKLLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGA-STDIA 308 (479)
T ss_pred HHHHHHHHHHHHHHhh-----------hhhhhhcc--hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCC-CCchH
Confidence 2222211111111000 00011111 0111122222333444555566677888888887766 44445
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccC
Q 008137 316 LALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDG 395 (576)
Q Consensus 316 ~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (576)
........+..+++.+++++++||+|||++++.+.++.+++.+++.......
T Consensus 309 ~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~---------------------------- 360 (479)
T PRK10077 309 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ---------------------------- 360 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC----------------------------
Confidence 5566667778899999999999999999999999988888877765442210
Q ss_pred CCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCccccc
Q 008137 396 NAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAP 475 (576)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (576)
...+.....++.+..++.....|..
T Consensus 361 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (479)
T PRK10077 361 -------------------------------------------------------APGIVALLSMLFYVAAFAMSWGPVC 385 (479)
T ss_pred -------------------------------------------------------cccHHHHHHHHHHHHHHhccccchh
Confidence 0012333444555555555556777
Q ss_pred chhccccccccccccchhHHHHHHHHHHHHHHHHHHHHH------HhhccchhhHHHHHHHHHHHHHHHhhccCCCCCCH
Q 008137 476 WIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLT------EALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAF 549 (576)
Q Consensus 476 ~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~------~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 549 (576)
+.+++|.+|++.|++++|+.+..++++.++++.+++.+. +..++...|++.+++++++.++.+++.||+|+++.
T Consensus 386 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 465 (479)
T PRK10077 386 WVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL 465 (479)
T ss_pred HHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCH
Confidence 889999999999999999999999999999987776544 56777788888888888888888888999999999
Q ss_pred HHHHHHHhCCC
Q 008137 550 EEVEKMLETGF 560 (576)
Q Consensus 550 ~~~~~~~~~~~ 560 (576)
+|.++..+++.
T Consensus 466 ~~~~~~~~~~~ 476 (479)
T PRK10077 466 EEMEALWEPET 476 (479)
T ss_pred HHHHHHHhhcc
Confidence 98888775543
No 4
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=100.00 E-value=2.8e-39 Score=353.95 Aligned_cols=442 Identities=21% Similarity=0.276 Sum_probs=315.1
Q ss_pred HHhhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhh-cc-chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 008137 19 NIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDF-RD-VEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGR 96 (576)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~-~~-~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Gr 96 (576)
++.+..+++++.+.+++++.+.+++|...++.+.|.+.+++ +. ........+++.+.+.++..++++++|+++||+||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Gr 85 (502)
T TIGR00887 6 DTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGR 85 (502)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34556677888889999999999999999999999987753 21 11122234899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcch------HHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHH
Q 008137 97 KISLLGADVLFFIGAIIMAIAPQ------PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQF 170 (576)
Q Consensus 97 r~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~ 170 (576)
|+++.++.+++.+++++++++++ ++.++++|+++|++.|+..+....+++|++|+++|++++++.+....+|.+
T Consensus 86 r~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~ 165 (502)
T TIGR00887 86 KRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGIL 165 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC----------------------CCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHH-HHHHHH
Q 008137 171 LAYLINLAFTK----------------------APGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVD-EARAIL 227 (576)
Q Consensus 171 l~~~l~~~l~~----------------------~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~-~~~~~l 227 (576)
+++.++..+.. ...+||++|.+.++++++.++.++++||||+|+..+++.+ ++++.+
T Consensus 166 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~ 245 (502)
T TIGR00887 166 AGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDM 245 (502)
T ss_pred HHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHH
Confidence 99888765431 0114999999999888887777888999999998777653 455555
Q ss_pred HHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhh--hhHHHHHHHHHHHHHhhHHHHhhhHHHHH
Q 008137 228 EKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRR--GLYAGVTVQVAQQFVGINTVMYYSPTIVQ 305 (576)
Q Consensus 228 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (576)
.+.+..+..++ .++.++ .+++ .+ ....+++++++++..++ +..+......+.+...++....+.|.+++
T Consensus 246 ~~~~~~~~~~~-~~~~~~-~~~~--~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~ 316 (502)
T TIGR00887 246 SAVLQVKIEAE-PDEVEK-ASTA--VE-----VPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILS 316 (502)
T ss_pred HHHhccccccC-cccccc-hhcc--cc-----chhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHH
Confidence 54433211100 000000 0000 00 00123455554322111 12222222222233344556667888888
Q ss_pred hhcCCchhH-----------HHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 008137 306 FAGFASKST-----------ALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTV 374 (576)
Q Consensus 306 ~~~~~~~~~-----------~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (576)
+.+...... ......+..++.+++.++.++++||+|||+++..+..+..++++++........
T Consensus 317 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~------ 390 (502)
T TIGR00887 317 AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS------ 390 (502)
T ss_pred HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 777643211 011223344556778899999999999999988888777777766654422100
Q ss_pred cccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchh
Q 008137 375 SQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGW 454 (576)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 454 (576)
..
T Consensus 391 ------------------------------------------------------------------------------~~ 392 (502)
T TIGR00887 391 ------------------------------------------------------------------------------TH 392 (502)
T ss_pred ------------------------------------------------------------------------------hh
Confidence 00
Q ss_pred HHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhh----------ccchhhH
Q 008137 455 LAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEAL----------GSAGTFL 524 (576)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~----------g~~~~~~ 524 (576)
..+....+....+..+..+..+.+.+|++|++.|+++.|+.+..++++++++|.+.+.+.+.. +....|+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 472 (502)
T TIGR00887 393 GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLE 472 (502)
T ss_pred HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHH
Confidence 111222222333445666777888899999999999999999999999999999999998743 3445788
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 008137 525 LFAGFSLLGLVAIYLLVPETKGLAFEEVEK 554 (576)
Q Consensus 525 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 554 (576)
+++++++++.+.. +++|||+++++||+++
T Consensus 473 i~~~~~~~~~i~~-~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 473 IFALFMFLGILFT-LLIPETKGKSLEELSG 501 (502)
T ss_pred HHHHHHHHHHHHh-eEeccCCCCCHHhhhC
Confidence 8888888776654 6789999999887754
No 5
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=1.8e-38 Score=348.23 Aligned_cols=457 Identities=44% Similarity=0.719 Sum_probs=370.0
Q ss_pred hhhHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHhhccchhhh----HHHHHHHHHHHHHHHHHHHHHHHhhhccCch
Q 008137 24 TPYIMKLALSAGIGGLLFGYD--TGVISGALLYIKEDFRDVEKKT----WLQELIVSMAVAGAIFGAGFGGWINDRFGRK 97 (576)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~----~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr 97 (576)
++..........++.+..+++ ....+++...+.++........ ...+++.+...++..+++++.|+++|++|||
T Consensus 40 ~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk 119 (513)
T KOG0254|consen 40 SPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRK 119 (513)
T ss_pred ceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 345556666777888888886 6677777777777544322222 2348999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008137 98 ISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINL 177 (576)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~ 177 (576)
+.++++.+++.++++++++++|+++++++|+++|+|.|+.....+.|++|..|++.||...+..+....+|..+++.++.
T Consensus 120 ~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~ 199 (513)
T KOG0254|consen 120 KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINY 199 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977776
Q ss_pred HhcCCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCc--hhhhHHHHHHHHHHHhhhhhhc
Q 008137 178 AFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPA--DQVEEEVNLLKQSVENEKAEEG 255 (576)
Q Consensus 178 ~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~--~~~~~~~~~~~~~~~~~~~~~~ 255 (576)
...+...+||.++.+..+++++..+..+++||+|+|+.++++.+++++.+.++++. .+...+.+........+.....
T Consensus 200 ~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (513)
T KOG0254|consen 200 GTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAE 279 (513)
T ss_pred hhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccc
Confidence 66543124999999999999998888888999999999999999999999999883 3334444333311111111100
Q ss_pred ccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHH
Q 008137 256 LIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMA 335 (576)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~ 335 (576)
. + ....++++ +..+++.++...+..++|+.+++...+|.+.+++..+..+.. .....+.++..+++..++.+
T Consensus 280 ~--~---~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~~~~~ 351 (513)
T KOG0254|consen 280 G--K---ASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLASIILGVVNFLGTLVATY 351 (513)
T ss_pred c--c---ccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch--HHHHHHHHHHHHHHHHHHHH
Confidence 0 0 12333444 667888888999999999999999999999999999886554 44556667778888899999
Q ss_pred hhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCC
Q 008137 336 FVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAH 415 (576)
Q Consensus 336 l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (576)
+.||+|||++++.+...+.++.++++........+.
T Consensus 352 lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~-------------------------------------------- 387 (513)
T KOG0254|consen 352 LVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYP-------------------------------------------- 387 (513)
T ss_pred HHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCC--------------------------------------------
Confidence 999999999999999999999999888766433210
Q ss_pred CCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHH
Q 008137 416 KGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIA 495 (576)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~ 495 (576)
++.....+..++..+++...+..+.+++.|.+.+|++|.+.|+.+.++.
T Consensus 388 -------------------------------~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~ 436 (513)
T KOG0254|consen 388 -------------------------------NSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLA 436 (513)
T ss_pred -------------------------------CcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHH
Confidence 0223446888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH-HHHhhccCCCCCCHHHHHHHHhCCCCcc
Q 008137 496 AVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLV-AIYLLVPETKGLAFEEVEKMLETGFKPS 563 (576)
Q Consensus 496 ~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (576)
...+++.+.+....+..+.+..+....|.++++.+.+... .+++++||||++++||+++..++.....
T Consensus 437 ~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~~~~ 505 (513)
T KOG0254|consen 437 VAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGIKPW 505 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCCchh
Confidence 9999999998887777777665545577777777777776 7888999999999999999877654433
No 6
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=100.00 E-value=9.4e-38 Score=336.92 Aligned_cols=442 Identities=39% Similarity=0.674 Sum_probs=325.6
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccc--------hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 008137 25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDV--------EKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGR 96 (576)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Gr 96 (576)
+..+....++.++.++..++...+++.+|.+..+++.+ ..+. +++.+++.++..++++++|+++||+||
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~l~d~~gr 100 (481)
T TIGR00879 24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLW---GLVVSIFLVGGFIGALFAGWLSDRFGR 100 (481)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHH---HHHHHHHHHHHHHHHHHhhHhhhhhhh
Confidence 34444555566677888999999999999999998876 4455 999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHH
Q 008137 97 KISLLGADVLFFIGAIIMAIA---PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAY 173 (576)
Q Consensus 97 r~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~ 173 (576)
|++++++.+++.++.+++.+. .+++.++++|+++|++.+...+....+++|++|+++|++++++.+.+..+|.++++
T Consensus 101 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 180 (481)
T TIGR00879 101 KKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY 180 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999998654 34568999999999999999999999999999999999999999999999999999
Q ss_pred HHH---HHhcCCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhh
Q 008137 174 LIN---LAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENE 250 (576)
Q Consensus 174 ~l~---~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~ 250 (576)
+++ ....+..+ ||+.|++.++..++.++..+++||+|++...+++.++.++...+....++...+...........
T Consensus 181 ~~~~~~~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (481)
T TIGR00879 181 GFGSGKVSLNNTLG-WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIK 259 (481)
T ss_pred HHHHHhhcCCCCcc-HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 998 65555555 99999997777777666677889999877666665555544444332221111111100000000
Q ss_pred hhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHH
Q 008137 251 KAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGS 330 (576)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~ 330 (576)
...+....+.......+..++ .+.+.++...+..+..........++.|.+.++.+. +....+.......++.+++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~ 336 (481)
T TIGR00879 260 RSIEKRSVQPSWGSLFSSTRR--IRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGV-STDHAFLVSIIVGAVNFAFT 336 (481)
T ss_pred HHHHHhhccccHHHHHhcCch--hHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHHH
Confidence 000000000001222222222 234445555555555555566677888888888877 44677777788888899999
Q ss_pred HHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccc
Q 008137 331 IVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKC 410 (576)
Q Consensus 331 ~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (576)
++.++++||++||+.+..++++.+++++++.........+..
T Consensus 337 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 378 (481)
T TIGR00879 337 FVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS-------------------------------------- 378 (481)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcc--------------------------------------
Confidence 999999999999999988887777776666543221100000
Q ss_pred cccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccccccccc
Q 008137 411 GFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGV 490 (576)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 490 (576)
....+..+....++..+++.+..+....+..|.+|++.|++
T Consensus 379 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 419 (481)
T TIGR00879 379 ---------------------------------------KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPK 419 (481)
T ss_pred ---------------------------------------cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHH
Confidence 00023334445555566666666777788899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCCHH
Q 008137 491 GGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFE 550 (576)
Q Consensus 491 ~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 550 (576)
+.|+.+...+++++++|.+.+.+.+..|+...|++.+++++++.++.+++.||+++++.+
T Consensus 420 ~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 420 GISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 999999999999999999999999999999999999999999888888888988876654
No 7
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=100.00 E-value=1.7e-35 Score=323.12 Aligned_cols=403 Identities=17% Similarity=0.149 Sum_probs=276.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhh--HHHHH-HHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137 28 MKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKT--WLQEL-IVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD 104 (576)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~g~-i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~ 104 (576)
++.+.+.+++.+++++|...++...|.+.++|+.+.++. +...+ ..++.++++.+|++++|+++||+|||+++.++.
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 356677788999999999999999999999997544332 11122 258889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchHHH--------HHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 008137 105 VLFFIGAIIMAIAPQPWV--------IILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLIN 176 (576)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~--------l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~ 176 (576)
++++++++++++++|+++ ++++|+++|++.|+.++.+.++++|++|+++|+++.++.+.+..+|..+++.+.
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999875 889999999999999999999999999999999999999988888888887665
Q ss_pred HHhcC--------CCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHH
Q 008137 177 LAFTK--------APGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVE 248 (576)
Q Consensus 177 ~~l~~--------~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~ 248 (576)
..+.. .. +||++|++.++++++.+++...+||+|++...+++.++..+ +..
T Consensus 175 ~~~~~~~~~~~~~~~-gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~-------------------~~~- 233 (490)
T PRK10642 175 VLISTIVGEANFLDW-GWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR-------------------EGL- 233 (490)
T ss_pred HHHHHhcCHHHhcCc-cHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc-------------------ccc-
Confidence 54321 34 49999999887777666666778999886532211110000 000
Q ss_pred hhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHH
Q 008137 249 NEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNAL 328 (576)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 328 (576)
.+.++ .++++.+++ .++...... ...+.....++.+..|.|.++++..+.+............++.++
T Consensus 234 --~~~~~-------~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~ 301 (490)
T PRK10642 234 --QDGPK-------VSFKEIATK--HWRSLLTCI-GLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLF 301 (490)
T ss_pred --ccccc-------CCHHHHHHH--hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 00000 122333332 122222222 222233345566777889988655333555566666677788889
Q ss_pred HHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccc
Q 008137 329 GSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKA 408 (576)
Q Consensus 329 g~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (576)
+.++.|+++||+|||+.+..+.++..++.+.+......
T Consensus 302 ~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 339 (490)
T PRK10642 302 VQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS------------------------------------------ 339 (490)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC------------------------------------------
Confidence 99999999999999998877765443332221111110
Q ss_pred cccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccccccc
Q 008137 409 KCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYR 488 (576)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 488 (576)
......++...+..++++... +....+..|++|++.|
T Consensus 340 ------------------------------------------~~~~~~~~~~~~~g~~~~~~~-g~~~~~~~~~~p~~~R 376 (490)
T PRK10642 340 ------------------------------------------NVIGLIFAGLLMLAVILNCFT-GVMASTLPAMFPTHIR 376 (490)
T ss_pred ------------------------------------------CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCccc
Confidence 000122222222222222222 2334566799999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHhhccCCCCCCH
Q 008137 489 GVGGGIAAVSNWTSNLIVSLTFLTLTEALG-SAGTFLLFAGFSLLGLVAIYLLVPETKGLAF 549 (576)
Q Consensus 489 g~~~g~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 549 (576)
|++.|+.+....+++.++|.+.+.+.+..+ ++.++++..+.++++++.. +++||++++..
T Consensus 377 g~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~~~ 437 (490)
T PRK10642 377 YSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETANRPL 437 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccCCCC
Confidence 999998766677888899999999888654 4555666666666666554 45688866533
No 8
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-36 Score=303.91 Aligned_cols=407 Identities=18% Similarity=0.128 Sum_probs=317.8
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHH
Q 008137 23 TTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLG 102 (576)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~ 102 (576)
-+++|+.++..+.+++...++.+..++.+.|.+.++.+.+..+. |++.+.+.+.+.++-.+.|.++||.+.|+.+.+
T Consensus 23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l---G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~ 99 (448)
T COG2271 23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL---GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAF 99 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHhhhhcccCCCceeehH
Confidence 35678889999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH--HHhc
Q 008137 103 ADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLIN--LAFT 180 (576)
Q Consensus 103 ~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~--~~l~ 180 (576)
++++.++.+++++++++.+.+.++-++.|..+|..+|.+...++.|+|++|||+..++++++-++|..+.+++. +.+.
T Consensus 100 gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~ 179 (448)
T COG2271 100 GLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA 179 (448)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 7777
Q ss_pred CCCchhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccch
Q 008137 181 KAPGTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGK 259 (576)
Q Consensus 181 ~~~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (576)
...+ ||..|++.++++++..+. ++.++|+|+..-.+.- ++.+. +..+..+++++.+.
T Consensus 180 ~~~~-w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~i-e~~~~----------------d~~e~~~~~~~~~~---- 237 (448)
T COG2271 180 FHGG-WRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPI-EEYRG----------------DPLEIYEEEKENEG---- 237 (448)
T ss_pred hccc-hhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCH-HHhhc----------------CchhhhhhhccCCC----
Confidence 7776 999999999998876655 6668888863221111 11000 00000000111110
Q ss_pred hhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc
Q 008137 260 DMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDK 339 (576)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk 339 (576)
-+.++.+.+..++++.++.+.+..++.+..-+.+..|.|.|+.+..+.+...+......+-.++++|+++.|+++||
T Consensus 238 ---ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDk 314 (448)
T COG2271 238 ---LTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDK 314 (448)
T ss_pred ---ccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 12334444455555667777777777788889999999999999888899999999999999999999999999999
Q ss_pred c--CChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCC
Q 008137 340 Y--GRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKG 417 (576)
Q Consensus 340 ~--grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (576)
+ |||..+.+.+.+.....++..+. .
T Consensus 315 lfkgrR~p~~~i~~~~i~~~~~~~w~-~---------------------------------------------------- 341 (448)
T COG2271 315 LFKGRRGPMALIFMLLITASLVLYWL-A---------------------------------------------------- 341 (448)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHc-C----------------------------------------------------
Confidence 7 67776654443333322222221 1
Q ss_pred CCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHH
Q 008137 418 NEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAV 497 (576)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~ 497 (576)
|.. ++.....+.....++..+..-+.-..+.|..|.+..|++.|+...
T Consensus 342 -------------------------------~~~-~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Gl 389 (448)
T COG2271 342 -------------------------------PNG-SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGL 389 (448)
T ss_pred -------------------------------CCc-cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhh
Confidence 111 122233333233333233333444567899999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhcc
Q 008137 498 SNWT-SNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVP 542 (576)
Q Consensus 498 ~~~~-g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 542 (576)
++.+ |.+.+....+.+.|.+||...|+++.+.++++.++.+....
T Consensus 390 f~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 390 FAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred HHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 9999 88899999999999999999999998888887776655443
No 9
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=100.00 E-value=3.2e-34 Score=308.10 Aligned_cols=383 Identities=21% Similarity=0.220 Sum_probs=260.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhc---cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHH
Q 008137 26 YIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFR---DVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLG 102 (576)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~ 102 (576)
++++.+...+++.+++++|+..++.+.|.+.++++ .+..+..+.+.+.+..+++..++++++|+++||+|||+++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 45566777788999999999999999999999985 344433233455566677777999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchHH--------HHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH
Q 008137 103 ADVLFFIGAIIMAIAPQPW--------VIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYL 174 (576)
Q Consensus 103 ~~~~~~i~~~~~~~~~~~~--------~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~ 174 (576)
+.++++++++++++++++. .++++|+++|++.|+.++.+.++++|++|+++|+++.++.+.+...|.++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999864 58999999999999999999999999999999999999999888888888887
Q ss_pred HHHHhcC--------CCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHH
Q 008137 175 INLAFTK--------APGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQS 246 (576)
Q Consensus 175 l~~~l~~--------~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~ 246 (576)
+...+.. .. +||++|++.++++++.++....+||+|++..++.
T Consensus 179 ~~~~~~~~~~~~~~~~~-gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~~---------------------------- 229 (432)
T PRK10406 179 VVVVLQQTLEDAELREW-GWRIPFALGAVLAVVALWLRRQLDETSQQETRAL---------------------------- 229 (432)
T ss_pred HHHHHHHhCCHHHHhcc-chHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhh----------------------------
Confidence 6655432 33 4999999988888776666666788764311000
Q ss_pred HHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHH
Q 008137 247 VENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLN 326 (576)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (576)
+ +. .++++.++++.. +.......+.....++.+..|.|.++++..+.+..+.+.......+..
T Consensus 230 ----~-~~--------~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~ 292 (432)
T PRK10406 230 ----K-EA--------GSLKGLWRNRRA----FIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVF 292 (432)
T ss_pred ----c-cc--------ccHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 0 00 122334433322 222222222223445667778898887654446666666666666777
Q ss_pred HHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccc
Q 008137 327 ALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCL 406 (576)
Q Consensus 327 ~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (576)
.++.++.|+++||++||+.+....++..+..+.+...... .
T Consensus 293 ~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~-------------------------------------- 333 (432)
T PRK10406 293 MLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQN-V-------------------------------------- 333 (432)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHc-C--------------------------------------
Confidence 8888899999999999988766555433332222111110 0
Q ss_pred cccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccccc
Q 008137 407 KAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLR 486 (576)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 486 (576)
+..+..+..+.+.....+ ...+..+.+.+|.+|++
T Consensus 334 --------------------------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~fp~~ 368 (432)
T PRK10406 334 --------------------------------------------SSPYAAFGLVMCALLIVS-FYTSISGILKAEMFPAQ 368 (432)
T ss_pred --------------------------------------------CcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCC
Confidence 001111111111111111 11224456789999999
Q ss_pred ccccchhHHHHHHHH-HHHHHHHHHHHHHHhhccc-hhhHHHHHHHHHHHHHHHh
Q 008137 487 YRGVGGGIAAVSNWT-SNLIVSLTFLTLTEALGSA-GTFLLFAGFSLLGLVAIYL 539 (576)
Q Consensus 487 ~rg~~~g~~~~~~~~-g~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~i~~~~~~~ 539 (576)
.|++++|+.+..+++ .+...|.+.+. .+..|.+ ..+++.+++.+++.+..++
T Consensus 369 ~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 369 VRALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred ccchhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999887665 34457777774 4555643 3455555666666555544
No 10
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=100.00 E-value=5.2e-35 Score=317.37 Aligned_cols=414 Identities=14% Similarity=-0.002 Sum_probs=290.2
Q ss_pred hHHHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008137 13 EFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWIND 92 (576)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~d 92 (576)
+.++...+....+..+.++.+++++.++.+.++..++...|.+.+|++.+..+. |++.+++.+++.+++++.|+++|
T Consensus 13 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~G~l~D 89 (467)
T PRK09556 13 DLPLEVQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTEL---GMIGLGFSITYGVGKTLVGYYAD 89 (467)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHhhhhhHhh
Confidence 334443444445567778888889999999999999999999999999998888 99999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHH
Q 008137 93 RFGRKISLLGADVLFFIGAIIMAI-----APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITG 167 (576)
Q Consensus 93 r~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~ 167 (576)
|+|||+++.++.+++++++++.++ +++++.+++.|+++|++.+...+...++++||+|+++|++++++++.+.++
T Consensus 90 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~l 169 (467)
T PRK09556 90 GKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNL 169 (467)
T ss_pred ccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccch
Confidence 999999999998888888776665 689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC--CchhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHH
Q 008137 168 GQFLAYLINLAFTKA--PGTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLK 244 (576)
Q Consensus 168 G~~l~~~l~~~l~~~--~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 244 (576)
|.++++++..++... .++||..|.+.++++++..+. +++.+++|+......+ ++ . ..... ..+
T Consensus 170 G~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~-~~---~---~~~~~--~~~----- 235 (467)
T PRK09556 170 GGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKA-EE---I---FGEPI--SEE----- 235 (467)
T ss_pred hhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCCh-hh---c---ccCcc--chh-----
Confidence 999999888766543 224999999988887766555 4455776643211111 00 0 00000 000
Q ss_pred HHHHhhhhhhcccchhhHHH-hhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHh
Q 008137 245 QSVENEKAEEGLIGKDMISR-LKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTS 323 (576)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (576)
++..+.++. ...+. .+..++++. ++...+..++..........|.|.|+++..+.+..+++.......
T Consensus 236 ---~~~~~~~~~---~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~ 304 (467)
T PRK09556 236 ---DKETESTDM---TKWQIFVEYVLKNPV-----IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFE 304 (467)
T ss_pred ---hhccccccC---cHHHHHHHHHHcChH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 000000000 00011 112344433 333333344444445667888999987655557777778878888
Q ss_pred HHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCccccc
Q 008137 324 GLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCM 403 (576)
Q Consensus 324 ~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (576)
++.+++.+++|+++||++||+.+.....+..++..++.+...
T Consensus 305 ~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 346 (467)
T PRK09556 305 IGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHA-------------------------------------- 346 (467)
T ss_pred HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhc--------------------------------------
Confidence 889999999999999999988766544433332222221100
Q ss_pred ccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccc
Q 008137 404 DCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIY 483 (576)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 483 (576)
+..+...+..+..+... .+..........|.+
T Consensus 347 -----------------------------------------------~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~ 378 (467)
T PRK09556 347 -----------------------------------------------TSEYMYLASLFALGFLV-FGPQLLIGVAAVGFV 378 (467)
T ss_pred -----------------------------------------------CcHHHHHHHHHHHHHHH-hhHHHHHHHHHHhhc
Confidence 00122222222222211 122112224556999
Q ss_pred cccccccchhHHHHHHHH-HHHHHHHHHHHHHH------------hhccchhhHHHHHHHHHHHHHHHhh
Q 008137 484 PLRYRGVGGGIAAVSNWT-SNLIVSLTFLTLTE------------ALGSAGTFLLFAGFSLLGLVAIYLL 540 (576)
Q Consensus 484 p~~~rg~~~g~~~~~~~~-g~~~~~~~~~~l~~------------~~g~~~~~~~~~~~~~i~~~~~~~~ 540 (576)
|++.||++.|+.+..+++ |.+++|.+.|.+.| ..||...|++..++++++.+..+++
T Consensus 379 p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 379 PKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred chhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 77999999999999 5678888988888888876665543
No 11
>TIGR00898 2A0119 cation transport protein.
Probab=100.00 E-value=2.9e-35 Score=322.46 Aligned_cols=394 Identities=22% Similarity=0.333 Sum_probs=289.0
Q ss_pred HHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Q 008137 50 GALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIF 129 (576)
Q Consensus 50 ~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l 129 (576)
+..|.+.+||+.++++.++.+++.+++.++..++++++|+++||+|||++++++.++.++++++++++++++.++++|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 56788999999996666666999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhhccC
Q 008137 130 VGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPE 209 (576)
Q Consensus 130 ~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~e 209 (576)
.|++.++..+....++.|++|+++|+++.++.+.+..+|.++++.++..+. +||+.|++.+++.++..+.++++||
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~~~~~e 265 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLSWFVPE 265 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999887765 4999999999988887777788999
Q ss_pred ChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHH
Q 008137 210 SPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQ 289 (576)
Q Consensus 210 sp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (576)
+|+|+..+++.+++.+.+++....+......+......+++...+. ...+.+++++++.++...+......+.
T Consensus 266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 338 (505)
T TIGR00898 266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSK-----KQYSFLDLFRTPNLRKTTLCLMMLWFT-- 338 (505)
T ss_pred ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhcc-----CCCcHHHHhCChHHHHHHHHHHHHHHH--
Confidence 9999999998888877766554332211111111100000000000 013456777777666654443332222
Q ss_pred HHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008137 290 FVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAI 369 (576)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (576)
.....+..+.+....+. +. ........+..+++.++.+++.||+|||+.+..+.++.+++++++.....
T Consensus 339 ---~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~---- 407 (505)
T TIGR00898 339 ---TAFSYYGLVLDLGNLGG-NI---YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV---- 407 (505)
T ss_pred ---HHHHHHHHhccccccCC-Ch---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC----
Confidence 11222222333333333 22 22334456677889999999999999999999888877777665544311
Q ss_pred cCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCC
Q 008137 370 HAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCP 449 (576)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 449 (576)
T Consensus 408 -------------------------------------------------------------------------------- 407 (505)
T TIGR00898 408 -------------------------------------------------------------------------------- 407 (505)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHH
Q 008137 450 SSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGF 529 (576)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~ 529 (576)
...+..+...++..++.. +..+..+.+.+|++|++.|++++|+.++...+|++++|.+.+ + +..+...++++++++
T Consensus 408 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~ 483 (505)
T TIGR00898 408 -DLYFLRTALAVLGKFGIT-SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGL 483 (505)
T ss_pred -CchHHHHHHHHHHHHHHH-HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHH
Confidence 001222222222222222 233456678899999999999999999999999999999998 4 445666788888888
Q ss_pred HHHHHHHHHhhccCCCCCCHH
Q 008137 530 SLLGLVAIYLLVPETKGLAFE 550 (576)
Q Consensus 530 ~~i~~~~~~~~~~~~~~~~~~ 550 (576)
++++.++. +++|||++++++
T Consensus 484 ~~~~~~~~-~~lpet~~~~l~ 503 (505)
T TIGR00898 484 ALLAGILT-LFLPETKGVPLP 503 (505)
T ss_pred HHHHHHHH-HcCcCCCCCCCC
Confidence 88876665 467999987754
No 12
>PRK11663 regulatory protein UhpC; Provisional
Probab=100.00 E-value=3.3e-34 Score=308.20 Aligned_cols=408 Identities=13% Similarity=0.062 Sum_probs=287.9
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137 25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD 104 (576)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~ 104 (576)
++++.+.....++.+..++++..++..+|.+.+++|.+..+. +++.+.+.+++.+++++.|++.||+|||+++.++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~ 95 (434)
T PRK11663 19 YWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDI---GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHH
Confidence 456667777778888889999999999999999999998888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137 105 VLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG 184 (576)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~ 184 (576)
++++++.++++++++++.+++.|++.|++.|..++...+++.|++|+++|++++++++.+.++|..+++++.+.+.+..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 175 (434)
T PRK11663 96 IATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG 175 (434)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred hhHHHHHHhHHHHHHHHH-HHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHH
Q 008137 185 TWRWMLGVAGLPAVVQFG-LMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMIS 263 (576)
Q Consensus 185 ~Wr~~f~v~~~~~~~~~~-~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (576)
||+.|++.+++.++..+ .++.++|+|++...+...++..+. .+. .++...+. .
T Consensus 176 -w~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~----------~~~--------~~~~~~~~-------~ 229 (434)
T PRK11663 176 -WRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA----------LEL--------AQQQEGAG-------L 229 (434)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc----------ccc--------chhccccC-------C
Confidence 99999998887665544 355678877542111100000000 000 00000000 0
Q ss_pred HhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhccc--C
Q 008137 264 RLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKY--G 341 (576)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~--g 341 (576)
+.++.++....+.+.++.+.............+..|.|.|+++..+.+..+++.......++++++.++.|+++||+ +
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~ 309 (434)
T PRK11663 230 SRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNG 309 (434)
T ss_pred ChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccC
Confidence 11111111111222233333333334444556677889888655444777778888888899999999999999998 3
Q ss_pred ChHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCC
Q 008137 342 RRRLM-IVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEY 420 (576)
Q Consensus 342 rr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (576)
+|+.. ....+...+....+.....
T Consensus 310 ~r~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 334 (434)
T PRK11663 310 NRGPMNLIFAAGILLSVGSLWLMPF------------------------------------------------------- 334 (434)
T ss_pred CccHHHHHHHHHHHHHHHHHHHccc-------------------------------------------------------
Confidence 33332 2222222222211111100
Q ss_pred CCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHH
Q 008137 421 LPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNW 500 (576)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~ 500 (576)
...+.........+ .+..+..........|.+|++.||+++|+.++..+
T Consensus 335 ------------------------------~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 383 (434)
T PRK11663 335 ------------------------------ASYVMQAACFFTIG-FFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAY 383 (434)
T ss_pred ------------------------------ccHHHHHHHHHHHH-HHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHH
Confidence 00011111111111 11112122223456899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 008137 501 TSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGL 547 (576)
Q Consensus 501 ~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 547 (576)
+|.+++|.++|.+.+..|+...|.+.+++++++.+..+...++++++
T Consensus 384 ~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 384 LGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 99999999999999999999999999888888877666655544443
No 13
>PRK12307 putative sialic acid transporter; Provisional
Probab=100.00 E-value=3.2e-33 Score=299.41 Aligned_cols=396 Identities=20% Similarity=0.232 Sum_probs=282.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137 25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD 104 (576)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~ 104 (576)
+++++.+..+.++.+.++++.....+..|.+.++++.++.+. +++.+++.+++.+++++.|+++||+|||+++.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~---~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~ 90 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEG---AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSI 90 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 456666778888899999999999999999999999998888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137 105 VLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG 184 (576)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~ 184 (576)
+++++++++++++++++.++++|+++|++.|...+....++.|++|+++|+++.++...+..+|.++++.+.+.+.+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~ 170 (426)
T PRK12307 91 VAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG 170 (426)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988887776
Q ss_pred hhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHH
Q 008137 185 TWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISR 264 (576)
Q Consensus 185 ~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (576)
||+.|++..+..++.+......||++++..++.+. .++ ..+...+....+
T Consensus 171 -w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~-----------------~~~~~~~~~~~~ 220 (426)
T PRK12307 171 -WRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KGK-----------------HSQSAWSVFSLS 220 (426)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------ccc-----------------ccccchhhhhHH
Confidence 99999986554444333333356654432111000 000 000000001123
Q ss_pred hhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChH
Q 008137 265 LKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRR 344 (576)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~ 344 (576)
.++.++++.++..... ....+..+...+....+.|.++++.+. +....+.......++.+++.++.|++.||++||+
T Consensus 221 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~ 297 (426)
T PRK12307 221 MKGLFNRAQFPLTLCV--FIVLFSIFGANWPIFGLLPTYLAGEGF-DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK 297 (426)
T ss_pred HHHHHhhchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 4455555544332211 111122222333455678888888765 5666677777788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCc
Q 008137 345 LMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGA 424 (576)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (576)
.+..+.++..+..+++.....
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------- 318 (426)
T PRK12307 298 TFSIGLLMSFLFIFPLFRIPQ----------------------------------------------------------- 318 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHcc-----------------------------------------------------------
Confidence 888776665544433322100
Q ss_pred ccccccccccccccccccccccCCCCcchhHHHHHHHHHHH-HhcCCcccccchhccccccccccccchhHHHHHHHHHH
Q 008137 425 CLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYII-TYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSN 503 (576)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~ 503 (576)
+ .+..+ ..+.++. ....+..+....++.|.+|++.||++.|+.+....+++
T Consensus 319 --------------------------~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~ 370 (426)
T PRK12307 319 --------------------------D-NYLLL-GACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSG 370 (426)
T ss_pred --------------------------c-cHHHH-HHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHH
Confidence 0 01111 1122222 22223334445677899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccchh-hHHHHHHHHHHHHHHHhhccC
Q 008137 504 LIVSLTFLTLTEALGSAGT-FLLFAGFSLLGLVAIYLLVPE 543 (576)
Q Consensus 504 ~~~~~~~~~l~~~~g~~~~-~~~~~~~~~i~~~~~~~~~~~ 543 (576)
.++|.+.+.+.+..|+... ++..+..++++.....+..|+
T Consensus 371 ~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (426)
T PRK12307 371 TFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPD 411 (426)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCCh
Confidence 9999999999998886543 333333333333333333343
No 14
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=100.00 E-value=2e-33 Score=299.06 Aligned_cols=384 Identities=22% Similarity=0.201 Sum_probs=286.7
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHH
Q 008137 24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGA 103 (576)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~ 103 (576)
.+++|.++.+..+..+++++|....+...|.+.++++.++.+. +++.+.+.++..+++++.|+++||+|||+++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 86 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQM---GWAFSAGILGLLPGALLGGRLADRIGRKRILIVS 86 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 3478888888889999999999999999999999999998888 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008137 104 DVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP 183 (576)
Q Consensus 104 ~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~ 183 (576)
.++..++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 166 (406)
T PRK11551 87 VALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA 166 (406)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888777
Q ss_pred chhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhH
Q 008137 184 GTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMI 262 (576)
Q Consensus 184 ~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (576)
+ ||+.|++.+++.++..+. ..++||+|++...+++.++.+
T Consensus 167 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------------------------------- 207 (406)
T PRK11551 167 A-WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA-------------------------------------- 207 (406)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh--------------------------------------
Confidence 6 999999988766655544 556788876432211100000
Q ss_pred HHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCC
Q 008137 263 SRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGR 342 (576)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~gr 342 (576)
...+..++.+..++ ........+......+....|.|.++++.+. +....+.......++.+++.++.|++.||++|
T Consensus 208 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 284 (406)
T PRK11551 208 PVLRALFGEGRATA--TLLLWISYFFTLIVLYFLLNWLPSLLVGQGL-SRSQAGLVQIAFNIGGALGSLLIGALMDRLRP 284 (406)
T ss_pred hhHHHHhhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 00000111111111 1111122223333445566678888888765 66677777788888899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCC
Q 008137 343 RRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLP 422 (576)
Q Consensus 343 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (576)
|+.+....+...++++++.....
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------- 307 (406)
T PRK11551 285 RRVVLLIYAGILASLAALAAAPS--------------------------------------------------------- 307 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc---------------------------------------------------------
Confidence 99887765555555443322110
Q ss_pred CcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHH
Q 008137 423 GACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTS 502 (576)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g 502 (576)
.+...+...+.+++. .+..+....+..|.+|++.||++.|+.+....+|
T Consensus 308 ------------------------------~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 356 (406)
T PRK11551 308 ------------------------------FAGMLLAGFAAGLFV-VGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLG 356 (406)
T ss_pred ------------------------------HHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHH
Confidence 122222222222222 2334556678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHHHHhh
Q 008137 503 NLIVSLTFLTLTEALGSAG-TFLLFAGFSLLGLVAIYLL 540 (576)
Q Consensus 503 ~~~~~~~~~~l~~~~g~~~-~~~~~~~~~~i~~~~~~~~ 540 (576)
..++|.+.|.+.+..+... .++....+.+++.+..+..
T Consensus 357 ~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 357 SMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998765443 3444444555555554443
No 15
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=100.00 E-value=4.2e-34 Score=305.28 Aligned_cols=398 Identities=16% Similarity=0.097 Sum_probs=280.6
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137 25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD 104 (576)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~ 104 (576)
+.+|+++..++++.+++++|+..++...|.+.+|++.+..+. |++.+++.+++.+++++.|+++||+|||+++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~ 80 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMF---GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIM 80 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHH---HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHH
Confidence 456788888899999999999999999999999999999888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Q 008137 105 VLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKA-- 182 (576)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~-- 182 (576)
++++++++++++++|++++++.|+++|++.+...+....++.|++|+++|++++++++.+.++|..+++++++.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (412)
T TIGR02332 81 VLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG 160 (412)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887642
Q ss_pred ---CchhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccc
Q 008137 183 ---PGTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIG 258 (576)
Q Consensus 183 ---~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (576)
..+||+.|++.++++++..++ ++++||+|+.... -..++.+...+..+.... +.+ +.+...++ ..
T Consensus 161 ~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~-~~ 229 (412)
T TIGR02332 161 LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW-LDEEDKKALKEMIDNDQL---TLE------QPEGAFAH-AA 229 (412)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCC-CCHHHHHHHHHHHHhccc---ccc------cccccccc-cc
Confidence 125999999988887765554 5667888752110 001111110000000000 000 00000000 00
Q ss_pred hhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhc-CCchhHHHHHHHHHhHHHHHHHHHHHHhh
Q 008137 259 KDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAG-FASKSTALALSLVTSGLNALGSIVSMAFV 337 (576)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ig~~~~g~l~ 337 (576)
......+++.+ ++ .++......+......+.+..|.|.++++.+ ..+...++.......++.+++.++.|+++
T Consensus 230 ~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~ 303 (412)
T TIGR02332 230 MPQRSMLREIF-TP-----AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHS 303 (412)
T ss_pred ccHHHHHHHhc-Ch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHh
Confidence 00001122222 12 2333444444455566778889999998753 33566777778888999999999999999
Q ss_pred cccCChHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCC
Q 008137 338 DKYGRRRLM-IVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHK 416 (576)
Q Consensus 338 dk~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (576)
||++||+.. ...+++..+++ ++... . .
T Consensus 304 dr~~~r~~~~~~~~~~~~~~~-~~~~~-~-~------------------------------------------------- 331 (412)
T TIGR02332 304 DRLKERKHHTALPYLFAAAGW-LLASA-T-D------------------------------------------------- 331 (412)
T ss_pred cccCccHHHHHHHHHHHHHHH-HHHHh-c-C-------------------------------------------------
Confidence 999977753 33333333222 11111 0 0
Q ss_pred CCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHH
Q 008137 417 GNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAA 496 (576)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~ 496 (576)
.....+..+.....+.. ...+..+....|.+|++.|+++.|+.+
T Consensus 332 -----------------------------------~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~a~g~~~ 375 (412)
T TIGR02332 332 -----------------------------------HNLIQLLGIIMASMGSF-SAMAIFWTTPDQSISLQARAIAIAVIN 375 (412)
T ss_pred -----------------------------------CHHHHHHHHHHHHHHhh-hhhhHHHhhcccccchHHHHHHHHHHH
Confidence 00111111222222211 112333455578899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHH
Q 008137 497 VSNWTSNLIVSLTFLTLTEALG-SAGTFLLFAGFS 530 (576)
Q Consensus 497 ~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~ 530 (576)
...++|++++|.+.+.+.+..| |...+++.+++.
T Consensus 376 ~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 376 ATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 9999999999999999999875 666666655543
No 16
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=100.00 E-value=2.8e-33 Score=296.39 Aligned_cols=391 Identities=18% Similarity=0.175 Sum_probs=279.9
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHH
Q 008137 23 TTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLG 102 (576)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~ 102 (576)
.++++|+.+..+.++.+.++++....+++.|.+.++++.+..+. +++.+++.++..+++++.|+++||+|||+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~ 82 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDA---ASLISAALISRWFGALMFGLWGDRYGRRLPMVT 82 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 45678888899999999999999999999999999999999888 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008137 103 ADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKA 182 (576)
Q Consensus 103 ~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~ 182 (576)
+.+++++++++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.+.+.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 162 (405)
T TIGR00891 83 SIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV 162 (405)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred Cc-hhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhh
Q 008137 183 PG-TWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDM 261 (576)
Q Consensus 183 ~~-~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (576)
.+ +||+.|++.+++.++.++....+||++++...+++.++.++..++...... . .+. ..++.
T Consensus 163 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------~~~----~~~~~ 225 (405)
T TIGR00891 163 WGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEH------R-------IAN----IVMTL 225 (405)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccch------h-------hhh----hhhhh
Confidence 43 599999988777766666666788876543322211111111111000000 0 000 00000
Q ss_pred HHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccC
Q 008137 262 ISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYG 341 (576)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~g 341 (576)
....+. ....+...+...................+.|.++.+..+.+..+.+.+.....++.+++.++.+++.||++
T Consensus 226 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g 302 (405)
T TIGR00891 226 AAAMVQ---SAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLG 302 (405)
T ss_pred hHHhhh---hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 001111 00011111111222222222223344556677776544447777777778888899999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCC
Q 008137 342 RRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYL 421 (576)
Q Consensus 342 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (576)
||+.+..+.++..+..+.+... .
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~-~-------------------------------------------------------- 325 (405)
T TIGR00891 303 RRKAYVCSLLAGQLLIIPVFAI-G-------------------------------------------------------- 325 (405)
T ss_pred chhhhHHHHHHHHHHHHHHHHh-C--------------------------------------------------------
Confidence 9998877665543322221111 0
Q ss_pred CCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHH
Q 008137 422 PGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWT 501 (576)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~ 501 (576)
. ..+...+..++..... .+..+....+..|.+|++.||+++|+.+....+
T Consensus 326 ----------------------------~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 375 (405)
T TIGR00891 326 ----------------------------A-NVAVLGLGLFFQQMLV-QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNL 375 (405)
T ss_pred ----------------------------C-chHHHHHHHHHHHHHH-ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHH
Confidence 0 0122222222222222 233445557789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc-cchhh
Q 008137 502 SNLIVSLTFLTLTEALG-SAGTF 523 (576)
Q Consensus 502 g~~~~~~~~~~l~~~~g-~~~~~ 523 (576)
+..++|.+.|.+.|..| +...+
T Consensus 376 g~~~g~~~~g~l~~~~g~~~~~~ 398 (405)
T TIGR00891 376 GGALAPIIGALLAQRLDEYGTAL 398 (405)
T ss_pred HHHHHHHHHHHHHHhccccchhH
Confidence 99999999999999988 54333
No 17
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-33 Score=289.27 Aligned_cols=375 Identities=19% Similarity=0.181 Sum_probs=298.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137 25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD 104 (576)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~ 104 (576)
+..+..++.+.++.|..+.+......++|++++|++.+..+. |++.|+|.++..+++++...+.||+.||++++..+
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~a---G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l 85 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAA---GQLITAYALGVALGAPLLALLTGRLERRRLLLGLL 85 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH
Confidence 345677888889999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137 105 VLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG 184 (576)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~ 184 (576)
.++.++++++++++||+.++++|++.|++.|..++.+.++.++..|+++|++++++...+.+++.++|.+++.++.+..|
T Consensus 86 ~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G 165 (394)
T COG2814 86 ALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG 165 (394)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHH
Q 008137 185 TWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMIS 263 (576)
Q Consensus 185 ~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (576)
||+.|++.+.++++.++. +..+| |+....+.+ .+ ..
T Consensus 166 -WR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~-~~---------------------------------------~~ 202 (394)
T COG2814 166 -WRATFLAIAVLALLALLLLWKLLP--PSEISGSLP-GP---------------------------------------LR 202 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCC-cc---------------------------------------hh
Confidence 999999999999988776 66688 211000000 00 02
Q ss_pred HhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCCh
Q 008137 264 RLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRR 343 (576)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr 343 (576)
+..+.++++..+. .....+..+.+.+....|+..++++..+.+.....+....+++++++|.+++|++.|| +.|
T Consensus 203 ~~~~~l~~p~v~~-----~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~ 276 (394)
T COG2814 203 TLLRLLRRPGVLL-----GLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR 276 (394)
T ss_pred HHHHHhcCchHHH-----HHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch
Confidence 2334455554433 2223333344445555555555555555588888888899999999999999999999 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCC
Q 008137 344 RLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPG 423 (576)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (576)
+.+.....++++.++.+.+....
T Consensus 277 ~~l~~~~~l~a~~~l~l~~~~~~--------------------------------------------------------- 299 (394)
T COG2814 277 RALIAALLLLALALLALTFTGAS--------------------------------------------------------- 299 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHhcch---------------------------------------------------------
Confidence 88888777777777766554221
Q ss_pred cccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccc--cccccccchhHHHHHHHH
Q 008137 424 ACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIY--PLRYRGVGGGIAAVSNWT 501 (576)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--p~~~rg~~~g~~~~~~~~ 501 (576)
.+..+....+.++.. .+....+..++. -++.++.+.+++....++
T Consensus 300 -----------------------------~~~~~~~~~~wg~a~----~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nl 346 (394)
T COG2814 300 -----------------------------PALALALLFLWGFAF----SPALQGLQTRLARLAPDAADLAGSLNVAAFNL 346 (394)
T ss_pred -----------------------------HHHHHHHHHHHHHHh----hhhhhHHHHHhcccCCCchHHHHHHHHHHHHH
Confidence 133333333322222 233333333333 357889999999999999
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhc
Q 008137 502 SNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLV 541 (576)
Q Consensus 502 g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 541 (576)
|..++..+.|.+.|+.|+....+..+.+.++++++.+...
T Consensus 347 gia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 347 GIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888888775543
No 18
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=4.8e-41 Score=362.73 Aligned_cols=434 Identities=34% Similarity=0.647 Sum_probs=338.5
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHH--Hhhccchh------hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137 33 SAGIGGLLFGYDTGVISGALLYIK--EDFRDVEK------KTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD 104 (576)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~i~--~~~~~~~~------~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~ 104 (576)
+..++.+..++|...++...+... ..+..+.. ...+.++..+...+|..+|++++|+++||+|||+.+.++.
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~ 83 (451)
T PF00083_consen 4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISA 83 (451)
T ss_pred eeHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 345667889999999888777655 22222111 1234589999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc---hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008137 105 VLFFIGAIIMAIAP---QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTK 181 (576)
Q Consensus 105 ~~~~i~~~~~~~~~---~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~ 181 (576)
++..+++++.++++ +++.+.++|+++|++.|+..+....++.|..|+++|++..++.+.+..+|.+++..++..+..
T Consensus 84 ~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~ 163 (451)
T PF00083_consen 84 LLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSY 163 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999 999999999999999999999999999999999999999999999999999998888766533
Q ss_pred CC--chhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccch
Q 008137 182 AP--GTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGK 259 (576)
Q Consensus 182 ~~--~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (576)
.. ..||+.+++.++++++.++..+++||||+|+..++|.+++++.+++.++.+..+++.++..+..++..+.+
T Consensus 164 ~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 238 (451)
T PF00083_consen 164 YSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESK----- 238 (451)
T ss_pred ccccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccc-----
Confidence 22 24999999999999888888889999999999999999999888876554332222222111111111110
Q ss_pred hhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc
Q 008137 260 DMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDK 339 (576)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk 339 (576)
..++++++++..+++.+..+.+..+.++.+.+...+|.+.+++..+..+. ........+...++.+++.++.||
T Consensus 239 ---~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 312 (451)
T PF00083_consen 239 ---ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS---FLATLILGLVNFLGTLLAIFLIDR 312 (451)
T ss_pred ---eeeeeccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccc
Confidence 44667777766666777777777777777777888888888887776444 233344456667788888899999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCC
Q 008137 340 YGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNE 419 (576)
Q Consensus 340 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (576)
+|||++++.+.++++++.+.+..........
T Consensus 313 ~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 343 (451)
T PF00083_consen 313 FGRRKLLIIGLLLMAICSLILGIIFFLGVSS------------------------------------------------- 343 (451)
T ss_pred ccccccccccccccccccccccccccccccc-------------------------------------------------
Confidence 9999999998888888877665111100000
Q ss_pred CCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHH
Q 008137 420 YLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSN 499 (576)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~ 499 (576)
+....+..++...++...+..+.++..+.+.+|++|++.|+++.|+....+
T Consensus 344 -----------------------------~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~ 394 (451)
T PF00083_consen 344 -----------------------------SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVG 394 (451)
T ss_pred -----------------------------ccccccccceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 000123334555556667777888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHH
Q 008137 500 WTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVEKM 555 (576)
Q Consensus 500 ~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 555 (576)
++++++.+.+...+.+..+....+.++++++++..++.++++||||+++++|++++
T Consensus 395 ~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 395 RIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 99999999999988888776678888999999998888999999999999999875
No 19
>PRK03545 putative arabinose transporter; Provisional
Probab=100.00 E-value=1.5e-32 Score=291.01 Aligned_cols=376 Identities=17% Similarity=0.117 Sum_probs=276.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137 25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD 104 (576)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~ 104 (576)
.++|..+..+.++.+....+.....+++|.+.+++|.+..+. |++.+++.+++.+++++.|++.||+|||+++.++.
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 81 (390)
T PRK03545 5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQV---GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLF 81 (390)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 345555666666666655555566777899999999999988 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137 105 VLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG 184 (576)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~ 184 (576)
++++++++++++++|+++++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|..+++++++.+.+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g 161 (390)
T PRK03545 82 VLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG 161 (390)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887776
Q ss_pred hhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHH
Q 008137 185 TWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMIS 263 (576)
Q Consensus 185 ~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (576)
||+.|++.++++++..+. +..+||.|+. ++ +. .+
T Consensus 162 -w~~~f~~~~~~~~l~~~~~~~~~~~~~~~----~~-~~---------------------------------------~~ 196 (390)
T PRK03545 162 -WRTTFLAIGGGALITLLLLIKLLPLLPSE----HS-GS---------------------------------------LK 196 (390)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCCCCCCC----Cc-ch---------------------------------------HH
Confidence 999999998887766554 4445664320 00 00 01
Q ss_pred HhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCCh
Q 008137 264 RLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRR 343 (576)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr 343 (576)
+.++.++++..+.... ..++... .......+.+.++++..+.+...++.......++++++.++.+++.||++||
T Consensus 197 ~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~ 271 (390)
T PRK03545 197 SLPLLFRRPALVSLYL----LTVVVVT-AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG 271 (390)
T ss_pred HHHHHHhCcHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 1233444444332211 1111111 1222334455555654444666777777788888999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCC
Q 008137 344 RLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPG 423 (576)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (576)
... .+..+..++..++.....
T Consensus 272 ~~~-~~~~~~~~~~~~l~~~~~---------------------------------------------------------- 292 (390)
T PRK03545 272 FLL-IAIALLLVCLLLLLPAAN---------------------------------------------------------- 292 (390)
T ss_pred HHH-HHHHHHHHHHHHHHHHhc----------------------------------------------------------
Confidence 654 333333333332221110
Q ss_pred cccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHH
Q 008137 424 ACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSN 503 (576)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~ 503 (576)
..+..++...+.+.+.. ...+.......+..| +.|++++|+.+...++|.
T Consensus 293 ----------------------------~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~ 342 (390)
T PRK03545 293 ----------------------------SEWHLSVLSIFWGIAIM-CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGI 342 (390)
T ss_pred ----------------------------hHHHHHHHHHHHHHHHh-cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHH
Confidence 01222333333333332 333334455667766 678999999999999999
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhcc
Q 008137 504 LIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVP 542 (576)
Q Consensus 504 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 542 (576)
.++|.+.|.+.+..|++..|.+.+++.+++.++.+...+
T Consensus 343 ~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 343 GAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999998888888766553
No 20
>PRK09952 shikimate transporter; Provisional
Probab=100.00 E-value=2.9e-32 Score=293.43 Aligned_cols=390 Identities=14% Similarity=0.138 Sum_probs=267.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHhh--ccchhhhHHHHHHH-----HHHHHHHHHHHHHHHHhhhccCch
Q 008137 26 YIMKLALSAGIGGLLFGYDTGVISGALLY-IKEDF--RDVEKKTWLQELIV-----SMAVAGAIFGAGFGGWINDRFGRK 97 (576)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-i~~~~--~~~~~~~~~~g~i~-----s~~~~~~~i~~~~~G~l~dr~Grr 97 (576)
++++.+....++.+++++|...++.+.|. +.+++ +.++.. +++. ++.+++..++++++|+++||+|||
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr 94 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM----GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRK 94 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccH
Confidence 44567778888999999999999988875 55565 454442 4332 456678889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHH--------HHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHH
Q 008137 98 ISLLGADVLFFIGAIIMAIAPQPW--------VIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQ 169 (576)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~ 169 (576)
+++.++.++++++++++++++++. .++++|+++|++.|+.++.+..++.|++|+++|++..+..+.+..+|.
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~ 174 (438)
T PRK09952 95 RMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGL 174 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999987 588999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC--------CCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHH
Q 008137 170 FLAYLINLAFTK--------APGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVN 241 (576)
Q Consensus 170 ~l~~~l~~~l~~--------~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~ 241 (576)
+++..+...+.. .. +||++|++.+++.++.+.....+||+|++...+++.++.+
T Consensus 175 ~l~~~~~~~l~~~~~~~~~~~~-gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~----------------- 236 (438)
T PRK09952 175 LLSTGLVSLISMMTTDEQFLSW-GWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAK----------------- 236 (438)
T ss_pred HHHHHHHHHHHHhCCHHHhhcc-ChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccccc-----------------
Confidence 998877766542 23 4999999988877665555566788876532221100000
Q ss_pred HHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHH
Q 008137 242 LLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLV 321 (576)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (576)
++. +..+..++++.. +.......+......+....|.|.|+++..+.+..........
T Consensus 237 ------------~~~------~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~ 294 (438)
T PRK09952 237 ------------KRI------PVIEALLRHPGA----FLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLL 294 (438)
T ss_pred ------------ccC------CHHHHHHHchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 000 001112222221 1112222222333455566677888765444354444444445
Q ss_pred HhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCccc
Q 008137 322 TSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWN 401 (576)
Q Consensus 322 ~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (576)
..+..+++.++.|+++||+|||+.+..++++..++.+.+...... .
T Consensus 295 ~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~--------------------------------- 340 (438)
T PRK09952 295 VGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA-Q--------------------------------- 340 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc-C---------------------------------
Confidence 566678888999999999999998887766555444333222110 0
Q ss_pred ccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccc
Q 008137 402 CMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSE 481 (576)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 481 (576)
+..+..+....+..++.+ ...+..+.+.+|
T Consensus 341 -------------------------------------------------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~e 370 (438)
T PRK09952 341 -------------------------------------------------SIFWIVFFSIMLANIAHD-MVVCVQQPMFTE 370 (438)
T ss_pred -------------------------------------------------ChHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 001222222222222222 223345678899
Q ss_pred cccccccccchhHHHHHH-HHHHHHHHHHHHHHHHhh--ccchhhHHHHHHHHHHHHHHHhhccCC
Q 008137 482 IYPLRYRGVGGGIAAVSN-WTSNLIVSLTFLTLTEAL--GSAGTFLLFAGFSLLGLVAIYLLVPET 544 (576)
Q Consensus 482 ~~p~~~rg~~~g~~~~~~-~~g~~~~~~~~~~l~~~~--g~~~~~~~~~~~~~i~~~~~~~~~~~~ 544 (576)
.+|++.|+++.|+.+..+ .+++.++|.+.+.+.+.. ++...+.+.+++++++.+..+ ..+|+
T Consensus 371 ~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~-~~~~~ 435 (438)
T PRK09952 371 MFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL-LMKDN 435 (438)
T ss_pred HCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-Hcccc
Confidence 999999999999976554 489999999999998854 356667777777777776654 45553
No 21
>PRK15075 citrate-proton symporter; Provisional
Probab=100.00 E-value=3.1e-32 Score=292.92 Aligned_cols=396 Identities=18% Similarity=0.158 Sum_probs=258.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHH-----HHHHHHHHHHHHHHHhhhccCchHHH
Q 008137 26 YIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVS-----MAVAGAIFGAGFGGWINDRFGRKISL 100 (576)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s-----~~~~~~~i~~~~~G~l~dr~Grr~~~ 100 (576)
.|++....++++.+++++|+..++...|.+.++++.++.+.. .+..+ ...++..+++++.|+++||+|||+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l 89 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFA--SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL 89 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchH--HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence 345567888899999999999999999999999998776641 22222 22344467899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchHH--------HHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHH
Q 008137 101 LGADVLFFIGAIIMAIAPQPW--------VIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLA 172 (576)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~~~~--------~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~ 172 (576)
+.+.+++++++++++++++++ .++++|+++|++.|...+....+++|++|+++|++++++.+.+..+|..++
T Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g 169 (434)
T PRK15075 90 IVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFA 169 (434)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 468999999999999999999999999999999999999998888888887
Q ss_pred HHHHHHhc--------CCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHH
Q 008137 173 YLINLAFT--------KAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLK 244 (576)
Q Consensus 173 ~~l~~~l~--------~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 244 (576)
+.+++.+. +..+ ||++|++.++..++.+......||++++..++++
T Consensus 170 ~~~g~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~------------------------- 223 (434)
T PRK15075 170 ALLGYLLNQWLSPAQMAEWG-WRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR------------------------- 223 (434)
T ss_pred HHHHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc-------------------------
Confidence 77777653 3344 9999998654433222222233443221100000
Q ss_pred HHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhH
Q 008137 245 QSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSG 324 (576)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (576)
.+ .+ +..+...++ ++..+. .....+.+...++....|.|.|+++..+.+..+.+.......+
T Consensus 224 --------~~---~~---~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~ 285 (434)
T PRK15075 224 --------PS---MR---EIFRSLAAN---WRIVLA-GMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGV 285 (434)
T ss_pred --------cc---cc---cHHHHHHHh---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 00 00 001111111 111111 1222233444566778889999987544466677777778888
Q ss_pred HHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccc
Q 008137 325 LNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMD 404 (576)
Q Consensus 325 ~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (576)
+++++.++.|+++||+|||+.+..+..+..+........... .
T Consensus 286 ~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~----------------------------------- 328 (434)
T PRK15075 286 SNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA--A----------------------------------- 328 (434)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc--C-----------------------------------
Confidence 889999999999999999998776544433221111111110 0
Q ss_pred cccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccc
Q 008137 405 CLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYP 484 (576)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 484 (576)
.. .........+...+++ ...+..+.+..|.+|
T Consensus 329 ---------------------------------------------~~-~~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p 361 (434)
T PRK15075 329 ---------------------------------------------PS-FARMLAVELWLSFLYG-SYNGAMVVALTEVMP 361 (434)
T ss_pred ---------------------------------------------Cc-hHHHHHHHHHHHHHHH-HHHhhHHHHHHHHCC
Confidence 00 0111111112222222 222344467789999
Q ss_pred ccccccchhHHHHHHHH-HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 008137 485 LRYRGVGGGIAAVSNWT-SNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEE 551 (576)
Q Consensus 485 ~~~rg~~~g~~~~~~~~-g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 551 (576)
++.|+++.|+.+..... ++.++|.+.+.+.|..|+.....++.+.+.++.++..+...+.++.+++.
T Consensus 362 ~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (434)
T PRK15075 362 AEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCGLIATLVLYRRRGARLQA 429 (434)
T ss_pred CCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhccccchhhhh
Confidence 99999999997655554 57889999999999988643222222222223333334455555555543
No 22
>PRK03893 putative sialic acid transporter; Provisional
Probab=100.00 E-value=5.5e-32 Score=295.70 Aligned_cols=429 Identities=17% Similarity=0.171 Sum_probs=286.8
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHH
Q 008137 24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGA 103 (576)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~ 103 (576)
++++|+.+..++++.++..++....++.+|.+.+++|.+..+. +++.+.+.+++.+++++.|+++||+|||++++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 91 (496)
T PRK03893 15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQA---ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVIS 91 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 3466778888889999999999999999999999999998888 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008137 104 DVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP 183 (576)
Q Consensus 104 ~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~ 183 (576)
.++++++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+.+.+.+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 171 (496)
T PRK03893 92 IVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW 171 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred chhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHH-HHhhhhhhcccchhhH
Q 008137 184 GTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQS-VENEKAEEGLIGKDMI 262 (576)
Q Consensus 184 ~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (576)
+ ||+.|++..+..++.++....+||++++...+++.++.++..+.....+............ ................
T Consensus 172 ~-w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (496)
T PRK03893 172 G-WRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAI 250 (496)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 6 9999988655555444445567877654322211111111111000000000000000000 0000000000000000
Q ss_pred H---------H-hhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHH
Q 008137 263 S---------R-LKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIV 332 (576)
Q Consensus 263 ~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~ 332 (576)
. . .....+.+..+.+.........+..+...+....+.|.|+++..+.+..+.+.+.....++.+++.++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~ 330 (496)
T PRK03893 251 VAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCV 330 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00000000011111111222222222222235567888886444447778888888889999999999
Q ss_pred HHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccc
Q 008137 333 SMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGF 412 (576)
Q Consensus 333 ~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (576)
.|+++||++||+.+..+.++..+..+++.....
T Consensus 331 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 363 (496)
T PRK03893 331 GGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGG----------------------------------------------- 363 (496)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-----------------------------------------------
Confidence 999999999999887766555444333221100
Q ss_pred cCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccch
Q 008137 413 CAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGG 492 (576)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~ 492 (576)
. .+..+............+..+....+..|.+|++.||+++
T Consensus 364 --------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 404 (496)
T PRK03893 364 --------------------------------------A-NVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGL 404 (496)
T ss_pred --------------------------------------c-HHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhccc
Confidence 0 1111212222222222233445556778999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH-HHHHHHhhcc
Q 008137 493 GIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLL-GLVAIYLLVP 542 (576)
Q Consensus 493 g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i-~~~~~~~~~~ 542 (576)
|+.+....+|+.++|.+.|.+.+..|+...+.+.++...+ +.+...+..|
T Consensus 405 ~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (496)
T PRK03893 405 GFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVILLIGLDMP 455 (496)
T ss_pred chhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999988776655544333 3333333344
No 23
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=100.00 E-value=3.5e-32 Score=285.67 Aligned_cols=355 Identities=14% Similarity=0.076 Sum_probs=250.0
Q ss_pred hhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchH
Q 008137 41 FGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP 120 (576)
Q Consensus 41 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~ 120 (576)
+......+++.+|.+.+|++.+..+. |++.+.+.+++.+++++.|+++||+|||+++..+......+.+....++++
T Consensus 3 ~~~~~~~~~~~lp~i~~~~~~s~~~~---g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 79 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAEDIDVSKEEL---GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNY 79 (368)
T ss_pred hhHHHHHHHhhHHHHHHHhCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccH
Confidence 34456678899999999999999888 999999999999999999999999999988766655554444333334799
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHH
Q 008137 121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQ 200 (576)
Q Consensus 121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~ 200 (576)
++++++|+++|++.+. .+.....++|++|+++|++++++.+.+..+|..+++++++.+.+..+ ||+.|++.++++++.
T Consensus 80 ~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~ 157 (368)
T TIGR00903 80 EWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAG 157 (368)
T ss_pred HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHH
Confidence 9999999999999996 56666777999999999999999999999999999999999988776 999999988887776
Q ss_pred HHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhH
Q 008137 201 FGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLY 279 (576)
Q Consensus 201 ~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (576)
.+. ++++||+|++..++.+ . .+ ..++++++++++..
T Consensus 158 ~~~~~~~lp~~p~~~~~~~~--~---------------~~---------------------~~~~~~~ll~~~~~----- 194 (368)
T TIGR00903 158 IILVLAALPALPFQAAEGFG--F---------------KD---------------------AVKEFGALAGRKDL----- 194 (368)
T ss_pred HHHHHHHcCCCCCCCCCCcc--h---------------HH---------------------HHHHHHHHHcChhH-----
Confidence 554 5678998763210000 0 00 00223455555443
Q ss_pred HHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCCh---HHHHH-HHHHHHH
Q 008137 280 AGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRR---RLMIV-SMFGLSS 355 (576)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr---~~~~~-~~~~~~~ 355 (576)
+......++....++.+..|.|.++++.+. +.. .+.......+.+.++ .++++||..|| +.... ..++.++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~-s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~ 269 (368)
T TIGR00903 195 WIIGAILGFGVALFDNLAIWLEAALRPAGL-EDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAA 269 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-ChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHH
Confidence 334344445555667778899999988765 444 444444444444444 57778877543 33222 2222222
Q ss_pred HHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccc
Q 008137 356 CLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTL 435 (576)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (576)
++..+.....
T Consensus 270 ~~~~~~~~~~---------------------------------------------------------------------- 279 (368)
T TIGR00903 270 FFLALAFELN---------------------------------------------------------------------- 279 (368)
T ss_pred HHHHHHHccc----------------------------------------------------------------------
Confidence 2222211100
Q ss_pred cccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008137 436 CSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE 515 (576)
Q Consensus 436 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~ 515 (576)
.+..+..+++..+ +..+..+..+.+.+|.+|++.||+++|+.+..+++++..+|.+.+.+..
T Consensus 280 -----------------~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~ 341 (368)
T TIGR00903 280 -----------------RLALFAFIGIAGL-LMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS 341 (368)
T ss_pred -----------------cHHHHHHHHHHHH-hhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc
Confidence 1222222332222 2223334566788999999999999999999999999999999988774
Q ss_pred hhccchhhHHHHHHHHHHHHHHH
Q 008137 516 ALGSAGTFLLFAGFSLLGLVAIY 538 (576)
Q Consensus 516 ~~g~~~~~~~~~~~~~i~~~~~~ 538 (576)
|....|.++++..+++.+..+
T Consensus 342 --~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 342 --SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred --CHHHHHHHHHHHHHHHHHHHH
Confidence 666778888888888777764
No 24
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=100.00 E-value=4e-32 Score=288.25 Aligned_cols=380 Identities=13% Similarity=0.075 Sum_probs=280.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 008137 26 YIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADV 105 (576)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~ 105 (576)
..|.....++++.+..... ..+++++|.+++|++.+..+. +++.+++.+++.+++++.|++.||+|||+++..+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~---g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~ 82 (393)
T PRK09705 7 LNFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVA---ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLL 82 (393)
T ss_pred hHHHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHH
Confidence 3455555666665554444 667899999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 008137 106 LFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGT 185 (576)
Q Consensus 106 ~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~ 185 (576)
+++++.++++++++++.++++|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++.+.+...+
T Consensus 83 l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~ 161 (393)
T PRK09705 83 LIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSET 161 (393)
T ss_pred HHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999997 7899999999999999999999999988877645
Q ss_pred hHHHHHHhHHHHHHHHHHHhhcc-CChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHH
Q 008137 186 WRWMLGVAGLPAVVQFGLMMMLP-ESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISR 264 (576)
Q Consensus 186 Wr~~f~v~~~~~~~~~~~~~~l~-esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (576)
||+.+.+.++..++.+..++... +.|+ + + + + .+ .+
T Consensus 162 w~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~--~----------------------------~-~~--------~~ 197 (393)
T PRK09705 162 WYQTLAWWALPAVVALFAWWWQSAREVA----S-S--H----------------------------K-TT--------TT 197 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCc----c-c--c----------------------------C-CC--------cC
Confidence 99998776666554443333322 2111 0 0 0 0 00 00
Q ss_pred hhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChH
Q 008137 265 LKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRR 344 (576)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~ 344 (576)
.++.++++..+ ............+.....|.|.++++.+. +..+++.......+++++++++.+++.||++||+
T Consensus 198 ~~~~l~~~~~~-----~l~~~~~~~~~~~~~~~~~lp~~l~~~g~-s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~ 271 (393)
T PRK09705 198 PVRVVFTPRAW-----TLGVYFGLINGGYASLIAWLPAFYIEIGA-SAQYSGSLLALMTLGQAAGALLMPAMARHQDRRK 271 (393)
T ss_pred CcccccCHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchH
Confidence 11122222221 12222233344556677788888888655 6777888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCc
Q 008137 345 LMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGA 424 (576)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (576)
.+..+..+..++..++.....
T Consensus 272 ~~~~~~~l~~~~~~~~~~~~~----------------------------------------------------------- 292 (393)
T PRK09705 272 LLMLALVLQLVGFCGFIWLPL----------------------------------------------------------- 292 (393)
T ss_pred HHHHHHHHHHHHHHHHHHccc-----------------------------------------------------------
Confidence 888776666665554332210
Q ss_pred ccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccc-cccccccchhHHHHHHHHHH
Q 008137 425 CLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIY-PLRYRGVGGGIAAVSNWTSN 503 (576)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~rg~~~g~~~~~~~~g~ 503 (576)
. ... + ...+.+.+.+ +..+.......+.. |++.+|+..|+.+....++.
T Consensus 293 --------------------------~-~~~-~-~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 342 (393)
T PRK09705 293 --------------------------Q-LPV-L-WAMVCGLGLG-GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIA 342 (393)
T ss_pred --------------------------h-HHH-H-HHHHHHHhcc-chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 0 011 1 1122223332 22333334444555 46789999999999999999
Q ss_pred HHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHhhccCCCCCCH
Q 008137 504 LIVSLTFLTLTEALG-SAGTFLLFAGFSLLGLVAIYLLVPETKGLAF 549 (576)
Q Consensus 504 ~~~~~~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 549 (576)
.++|.+.|++.|..| +...|.+..+++++..++.+.+.|||+++..
T Consensus 343 ~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 343 GLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 999999999999986 5666777777777777777888899887653
No 25
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=100.00 E-value=7.8e-32 Score=291.32 Aligned_cols=401 Identities=15% Similarity=0.092 Sum_probs=269.7
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHH
Q 008137 24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGA 103 (576)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~ 103 (576)
++++|.++...++.....+.++..++...|.+.++ +.+..+. +++.+++.+++.+++++.|+++||+|||++++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~---g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~ 99 (452)
T PRK11273 24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDL---GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 99 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHH---HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHH
Confidence 44566666667777777888888888889999888 9888888 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHH-HHHHHHHH
Q 008137 104 DVLFFIGAIIMAIAP----QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQF-LAYLINLA 178 (576)
Q Consensus 104 ~~~~~i~~~~~~~~~----~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~-l~~~l~~~ 178 (576)
.++++++.+++++++ +++.+++.|++.|++.|..++.....+.|++|+++|++++++++.+.++|.. .++++...
T Consensus 100 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 179 (452)
T PRK11273 100 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLG 179 (452)
T ss_pred HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999888763 7888999999999999998888888999999999999999999999998864 45554433
Q ss_pred hcCCCchhHHHHHHhHHHHHHHHH-HHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhccc
Q 008137 179 FTKAPGTWRWMLGVAGLPAVVQFG-LMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLI 257 (576)
Q Consensus 179 l~~~~~~Wr~~f~v~~~~~~~~~~-~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (576)
+.... +||+.|++.+++.++..+ .++++||+|+....+.+ ++.++. . ..+ .. ..+.++
T Consensus 180 ~~~~~-gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~------~---~~~-------~~-~~~~~~-- 238 (452)
T PRK11273 180 MAWFN-DWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPI-EEYKND------Y---PDD-------YN-EKHEQE-- 238 (452)
T ss_pred HHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCCh-hhhhhc------c---ccc-------cc-cccCCC--
Confidence 33333 599999998887766544 46667888754211111 110000 0 000 00 000000
Q ss_pred chhhHHHh-hhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHh
Q 008137 258 GKDMISRL-KGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAF 336 (576)
Q Consensus 258 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l 336 (576)
.+..+.. +..++++. ++...+..+......+....|.|.|+++..+.+...++....+..++.+++.++.|++
T Consensus 239 -~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l 312 (452)
T PRK11273 239 -LTAKQIFMQYVLPNKL-----LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 312 (452)
T ss_pred -ccHHHHHHHHHHcChH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111 12333333 3333333333334455667788999987644466677777777888889999999999
Q ss_pred hccc--CChHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCccccccccccccccc
Q 008137 337 VDKY--GRRRLMI-VSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFC 413 (576)
Q Consensus 337 ~dk~--grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (576)
+||+ +||.... ..+.+..++.+++... . .
T Consensus 313 ~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~-~-~---------------------------------------------- 344 (452)
T PRK11273 313 SDKVFRGNRGATGVFFMTLVTIATIVYWLN-P-A---------------------------------------------- 344 (452)
T ss_pred HHHHccCCcchHHHHHHHHHHHHHHHHHHh-c-c----------------------------------------------
Confidence 9998 4554322 2222222222221111 0 0
Q ss_pred CCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchh
Q 008137 414 AHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGG 493 (576)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g 493 (576)
...+..++.+...+.... +.......+..|.+|++.||+++|
T Consensus 345 -------------------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g 386 (452)
T PRK11273 345 -------------------------------------GNPTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAG 386 (452)
T ss_pred -------------------------------------cChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHH
Confidence 001111222222222111 111122345679999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhc
Q 008137 494 IAAVSNWTSNLI-VSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLV 541 (576)
Q Consensus 494 ~~~~~~~~g~~~-~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 541 (576)
+.+....+|+.+ +|.+.|.+.|..|+...|++.+++++++.+....+.
T Consensus 387 ~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 387 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 999988888765 799999999999999999988888888777665433
No 26
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=100.00 E-value=2.2e-31 Score=291.08 Aligned_cols=388 Identities=14% Similarity=0.062 Sum_probs=282.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 008137 26 YIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADV 105 (576)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~ 105 (576)
++|..+..++++.++..+|.++++..+|.+.+++|.+..+. +|+.+.+.++..++++++|+++||+|||++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~---~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~ 79 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNEL---LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGT 79 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45778899999999999999999999999999999988888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhcc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137 106 LFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEAS-PAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG 184 (576)
Q Consensus 106 ~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~-~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~ 184 (576)
++.++++++++++|++.++++|+++|+|.++..+.....+.+++ |+++|+++++++.....+|..+||++++.+.+..+
T Consensus 80 ~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g 159 (495)
T PRK14995 80 LFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY 159 (495)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999998888887776 67999999999999999999999999999999887
Q ss_pred hhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHH---------HhC-C-chhhhH-H-HHH-------H
Q 008137 185 TWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILE---------KIY-P-ADQVEE-E-VNL-------L 243 (576)
Q Consensus 185 ~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~---------~i~-~-~~~~~~-~-~~~-------~ 243 (576)
|||.|++...++++.+++ .+++||++... +++.|....... ... . .+.... . ... .
T Consensus 160 -wr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 236 (495)
T PRK14995 160 -WGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLL 236 (495)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Confidence 999999988777766554 55677765321 111121111000 000 0 000000 0 000 0
Q ss_pred HH-HHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHH
Q 008137 244 KQ-SVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVT 322 (576)
Q Consensus 244 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (576)
.. ...+.+..++. . ..+.++++ .+.......+..........++.|.+++...+.+..+++....+.
T Consensus 237 ~~f~~~e~~~~~p~------~-~~~lf~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~ 304 (495)
T PRK14995 237 GLFIRTQLAASRPM------I-DMRLFTHR-----IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPV 304 (495)
T ss_pred HHHHHHHhcCCCCC------c-CHHHhCCc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 00 00000000000 0 01233333 333333334444444556677889999987777889999999999
Q ss_pred hHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccc
Q 008137 323 SGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNC 402 (576)
Q Consensus 323 ~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (576)
.++..++.++.|++.||+|+|+.+..+.++..++.+++.....
T Consensus 305 ~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~------------------------------------- 347 (495)
T PRK14995 305 MVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF------------------------------------- 347 (495)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC-------------------------------------
Confidence 9999999999999999999999888887777666655443211
Q ss_pred cccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccc
Q 008137 403 MDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEI 482 (576)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 482 (576)
....+......++.+++.+... +.......+.
T Consensus 348 -----------------------------------------------~~~~~~~~~~~~l~G~g~g~~~-~~~~~~~~~~ 379 (495)
T PRK14995 348 -----------------------------------------------STQQWQAWGLMALLGFSAASAL-LASTSAIMAA 379 (495)
T ss_pred -----------------------------------------------CCchHHHHHHHHHHHHhHHHHH-HHHHHHHHhc
Confidence 0001222333444444443222 2334555677
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008137 483 YPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEA 516 (576)
Q Consensus 483 ~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~ 516 (576)
.|++.++.+.++.++...+|+.+++.+.+.+.+.
T Consensus 380 ~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 380 APPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred CCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999988764
No 27
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-34 Score=289.12 Aligned_cols=438 Identities=22% Similarity=0.322 Sum_probs=307.2
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhc-cch----hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchH
Q 008137 24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFR-DVE----KKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKI 98 (576)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~ 98 (576)
.++..+.+.+...+.+.+.||...++.+.|.+...+- .+. -..-..+.+..+..+|.++||+++|++.||+|||+
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~ 115 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK 115 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 5677788888899999999999999999998877653 221 11122388999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcc-------hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHH
Q 008137 99 SLLGADVLFFIGAIIMAIAP-------QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFL 171 (576)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~~~-------~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l 171 (576)
++...++++.+++++++++. -++++.+.|+++|+|.|+.+|.+.+..+|..-.+.||...+.+.+.++.|...
T Consensus 116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila 195 (538)
T KOG0252|consen 116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA 195 (538)
T ss_pred hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence 99999999999999888853 26889999999999999999999999999999999999998887777777766
Q ss_pred HHHHHHHhc----CCC----------chhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcC-CHHHHHHHHHHhCCchhh
Q 008137 172 AYLINLAFT----KAP----------GTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQN-KVDEARAILEKIYPADQV 236 (576)
Q Consensus 172 ~~~l~~~l~----~~~----------~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~-~~~~~~~~l~~i~~~~~~ 236 (576)
|.+++..+. ... +-||..|.+.++++++.+...+.+||++++..... +.+.+.+..++....
T Consensus 196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~--- 272 (538)
T KOG0252|consen 196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSV--- 272 (538)
T ss_pred ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccccc---
Confidence 665555433 211 13999999999999999999999999998863222 212221111110000
Q ss_pred hHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHH
Q 008137 237 EEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTAL 316 (576)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (576)
+. ..... .+......++....+...+..+ .-+.++.....++.. =..++....+...+++..+..+.....
T Consensus 273 --~~---~~~~~--~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFll-Diafy~~nL~~s~I~~~ig~~~~~~~~ 343 (538)
T KOG0252|consen 273 --DI---EAEST--AESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLL-DIAFYGQNLFQSVIFSAIGVIPSANTY 343 (538)
T ss_pred --cc---chhhc--cccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhh-hhhhhccccHHHHHHHhhccCCCcchH
Confidence 00 00000 0000000000001111111111 112223322222222 223445555666666655543322211
Q ss_pred -------HH-HHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCC
Q 008137 317 -------AL-SLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTC 388 (576)
Q Consensus 317 -------~~-~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (576)
.. ..+...+.++|.++...++|++|||+..+.+++++.+.++.++.......
T Consensus 344 ~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~-------------------- 403 (538)
T KOG0252|consen 344 HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE-------------------- 403 (538)
T ss_pred HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccc--------------------
Confidence 11 12233334557888889999999999999999998888777665533100
Q ss_pred CcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhc
Q 008137 389 PAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYS 468 (576)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 468 (576)
.. ...+++..+..++..
T Consensus 404 -------------------~~--------------------------------------------~Gf~v~y~l~~ff~N 420 (538)
T KOG0252|consen 404 -------------------NT--------------------------------------------IGFVVLYSLTFFFGN 420 (538)
T ss_pred -------------------cc--------------------------------------------CceeehHHHHHHHHh
Confidence 01 122455556666677
Q ss_pred CCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH-----hhccchhhHHHHHHHHHHHHHHHhhccC
Q 008137 469 PGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE-----ALGSAGTFLLFAGFSLLGLVAIYLLVPE 543 (576)
Q Consensus 469 ~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~-----~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 543 (576)
+|.+.....+.+|.+|++.||+..|+...++..|++++...+.++.+ ..|.+.++++++++++++.+..+ ++||
T Consensus 421 FGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pE 499 (538)
T KOG0252|consen 421 FGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPE 499 (538)
T ss_pred cCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE-Eeec
Confidence 78777888999999999999999999999999999999999999999 78888899999999999988874 4789
Q ss_pred CCCCCHHHHHHHHh
Q 008137 544 TKGLAFEEVEKMLE 557 (576)
Q Consensus 544 ~~~~~~~~~~~~~~ 557 (576)
|++++++|++++.+
T Consensus 500 tk~~~leei~~e~~ 513 (538)
T KOG0252|consen 500 TKGKSLEEISNEEE 513 (538)
T ss_pred ccccCHHHhcChhh
Confidence 99999999866544
No 28
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=100.00 E-value=4e-32 Score=284.01 Aligned_cols=360 Identities=16% Similarity=0.080 Sum_probs=265.0
Q ss_pred hhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchH
Q 008137 41 FGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP 120 (576)
Q Consensus 41 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~ 120 (576)
.......+++..|.+.++++.++.+. +++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++++++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~ 91 (377)
T TIGR00890 15 TSGYVYTWTLLAPPLGRYFGVGVTAV---AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSL 91 (377)
T ss_pred HhhHHhhhhhHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHH
Confidence 33346678899999999999998888 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHH
Q 008137 121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQ 200 (576)
Q Consensus 121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~ 200 (576)
+.++++|++.|++.+...+.....+.|++| ++|+++.++...+.++|..+++++.+.+.+..+ ||+.|++.+++.++.
T Consensus 92 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~ 169 (377)
T TIGR00890 92 AALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPAAFIYMGIIFLLV 169 (377)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHHHHHHHHHHHHHH
Confidence 999999999999999998888899999997 579999999999999999887777777666655 999999999888777
Q ss_pred HHHH-hhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhH
Q 008137 201 FGLM-MMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLY 279 (576)
Q Consensus 201 ~~~~-~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (576)
.+.. ++++++|+...++++ +. + .+ ..+.++.++++..+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~-~~--------------~---------------~~-------~~~~~~~~~~~~~~~--- 209 (377)
T TIGR00890 170 IVLGAFLIGYPPGQLIKTNI-EV--------------S---------------VK-------DYTVWEMLRTPQFWV--- 209 (377)
T ss_pred HHHHHHheecCchhccccCc-cc--------------c---------------hh-------hhhHHHHHcCccHHH---
Confidence 6654 445544321100000 00 0 00 011223344443322
Q ss_pred HHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHH
Q 008137 280 AGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVA 359 (576)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~ 359 (576)
.....+...........+.+.+.++.+. +....+.......++.++++++.|++.||++||+.+..+.++..++.++
T Consensus 210 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 286 (377)
T TIGR00890 210 --LYLSFFLNAVSGLLLIGLYKPYGQSLGL-SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAA 286 (377)
T ss_pred --HHHHHHHHhHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 1111121222222333344556666665 5566677778888889999999999999999999988887777777665
Q ss_pred HHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccc
Q 008137 360 LAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDE 439 (576)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (576)
+......
T Consensus 287 ~~~~~~~------------------------------------------------------------------------- 293 (377)
T TIGR00890 287 MLFIPML------------------------------------------------------------------------- 293 (377)
T ss_pred HHHcccc-------------------------------------------------------------------------
Confidence 4432110
Q ss_pred cccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008137 440 HRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGS 519 (576)
Q Consensus 440 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~ 519 (576)
..+..+....+.....+ ...+....+..|.+|++.|++..|+.+....+|..++|.+.+.+.+..|+
T Consensus 294 ------------~~~~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 360 (377)
T TIGR00890 294 ------------NDVLFLATVALVFFTWG-GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGF 360 (377)
T ss_pred ------------hhHHHHHHHHHHHHHhc-cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 01222222233333333 22334456778999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHH
Q 008137 520 AGTFLLFAGFSLLGL 534 (576)
Q Consensus 520 ~~~~~~~~~~~~i~~ 534 (576)
...|.+.+++++++.
T Consensus 361 ~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 361 EYTFIVTGAFALTSL 375 (377)
T ss_pred hhHHHHHHHHHHHhc
Confidence 988888887777654
No 29
>TIGR00893 2A0114 d-galactonate transporter.
Probab=100.00 E-value=1.5e-31 Score=280.73 Aligned_cols=392 Identities=18% Similarity=0.197 Sum_probs=281.0
Q ss_pred HHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhc
Q 008137 38 GLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIA 117 (576)
Q Consensus 38 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~ 117 (576)
.++..+|+..++...|.+.++++.+..+. +++.+++.++..+++++.|+++||+|||+++.++.++++++.++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 79 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDLGLSAAQY---GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA 79 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhhCCChhhH---HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH
Confidence 35677888999999999999999998888 999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHH
Q 008137 118 PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPA 197 (576)
Q Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~ 197 (576)
++++.++++|++.|++.+...+....++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.|++.+++.
T Consensus 80 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ 158 (399)
T TIGR00893 80 GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLG 158 (399)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998887776 999999988887
Q ss_pred HHHHHHH-hhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhh
Q 008137 198 VVQFGLM-MMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRR 276 (576)
Q Consensus 198 ~~~~~~~-~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (576)
++..+.. +..||+|+..... +.++........ ....+ +.+. .+......++.++++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------------~~~~~-~~~~----~~~~~~~~~~~~~~~~~-- 217 (399)
T TIGR00893 159 IIWGVLWLKFIPDPPQKAKWL-TEEEKYIVVGGL-------------LAEQQ-GKGP----STPKKYQIKELLKDRRV-- 217 (399)
T ss_pred HHHHHHhhheecCCCCccccC-CHHHHhhcchhh-------------ccccc-cccc----cCCCccchHHHhcCHHH--
Confidence 7766554 4456654321111 111000000000 00000 0000 00011233444444432
Q ss_pred hhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHH-HHHHHHHHH
Q 008137 277 GLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLM-IVSMFGLSS 355 (576)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~-~~~~~~~~~ 355 (576)
+......+...........+.|.++++..+.+..+.+.......++++++.++.++++||++||+.. ........+
T Consensus 218 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 294 (399)
T TIGR00893 218 ---WGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAII 294 (399)
T ss_pred ---HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Confidence 2233334444445566777888888776555777788888888888999999999999999998621 111111112
Q ss_pred HHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccc
Q 008137 356 CLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTL 435 (576)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (576)
+.+...........
T Consensus 295 ~~~~~~~~~~~~~~------------------------------------------------------------------ 308 (399)
T TIGR00893 295 AGLVLSLLMFATNY------------------------------------------------------------------ 308 (399)
T ss_pred HHHHHHHHHHHhcc------------------------------------------------------------------
Confidence 21111111110000
Q ss_pred cccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008137 436 CSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE 515 (576)
Q Consensus 436 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~ 515 (576)
.+..+..+ .... ...+..+..+..+.+..|.+|++.||++.|+.+....+|+.++|.+.+.+.+
T Consensus 309 --------------~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~ 372 (399)
T TIGR00893 309 --------------VNIPYAAL-ALVA-LGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAA 372 (399)
T ss_pred --------------chhHHHHH-HHHH-HHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhcc
Confidence 00012222 2222 2223333567778899999999999999999999999999999999999999
Q ss_pred hhc-cchhhHHHHHHHHHHHHHHHh
Q 008137 516 ALG-SAGTFLLFAGFSLLGLVAIYL 539 (576)
Q Consensus 516 ~~g-~~~~~~~~~~~~~i~~~~~~~ 539 (576)
..| +...+++.+++.+++.+..++
T Consensus 373 ~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 373 TTGSFAGALMVVAALALIGALSYLL 397 (399)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHH
Confidence 988 888888888887777666543
No 30
>PRK03699 putative transporter; Provisional
Probab=100.00 E-value=5.9e-31 Score=279.36 Aligned_cols=376 Identities=14% Similarity=0.056 Sum_probs=276.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137 25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD 104 (576)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~ 104 (576)
..+++.....+++.++.+.+...+++.+|.+.++++.+..+. +++.+.+.+++.+++++.|++.||+|||+++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~---g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~ 79 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSM---SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGF 79 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345566667778888999999999999999999999998888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137 105 VLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG 184 (576)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~ 184 (576)
++.+++.++++++++++.+++.|+++|++.|...+....++.|++|+++|+++++..+....+|..++|.+.+.+.....
T Consensus 80 ~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 159 (394)
T PRK03699 80 ALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSI 159 (394)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887754333
Q ss_pred hhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHH
Q 008137 185 TWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISR 264 (576)
Q Consensus 185 ~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (576)
+||+.|++.+++.++..+..++ .+.|+.. ++.+ + +.+ +.
T Consensus 160 gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~-~~~~-~------------------------------~~~--------~~ 198 (394)
T PRK03699 160 EWYWVYACIGLVYVAIFILTLF-SEFPALG-KHAP-K------------------------------ADK--------PV 198 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-cCCcccc-ccCc-c------------------------------ccC--------cc
Confidence 4999999988877665544333 2222100 0000 0 000 00
Q ss_pred hhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChH
Q 008137 265 LKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRR 344 (576)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~ 344 (576)
.++ ..++. ++...+..+........+..|.|.|+++..+.+..+++.+.....++.+++.++.++++||++||+
T Consensus 199 ~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~ 272 (394)
T PRK03699 199 AKE-----KWGIG-VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR 272 (394)
T ss_pred ccc-----cCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence 000 01111 222223333333445567788999997665557777888878888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCc
Q 008137 345 LMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGA 424 (576)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (576)
.+.....+..+..+++....
T Consensus 273 ~l~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 292 (394)
T PRK03699 273 ILTVLAGLALVLMYLFVNTD------------------------------------------------------------ 292 (394)
T ss_pred HHHHHHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence 88776655544433332110
Q ss_pred ccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHH
Q 008137 425 CLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNL 504 (576)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~ 504 (576)
+ .+...+..+..+++.. +..+....+..|..| +.++...|.......+|..
T Consensus 293 --------------------------~-~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~ 343 (394)
T PRK03699 293 --------------------------D-PSHLLYAILGLGFFSS-AIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTM 343 (394)
T ss_pred --------------------------C-chHHHHHHHHHHHHHH-HHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHH
Confidence 0 0122222222322222 233344445566655 4456778888889999999
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHh
Q 008137 505 IVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYL 539 (576)
Q Consensus 505 ~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 539 (576)
++|.+.|.+.+..|++..++..+++.+++.+.+..
T Consensus 344 i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 344 LTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL 378 (394)
T ss_pred HHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999998988888887777665544
No 31
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=100.00 E-value=1.5e-31 Score=289.17 Aligned_cols=398 Identities=11% Similarity=0.021 Sum_probs=273.4
Q ss_pred hchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHH
Q 008137 22 WTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLL 101 (576)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~ 101 (576)
+...++|.++..+.+.......+...++..+|.+.++++.+..+. +++.+.+.++..++.++.|+++||+|||++++
T Consensus 12 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~---~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~ 88 (455)
T TIGR00892 12 PDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSET---AWISSIMLAVLYAGGPISSILVNRFGCRPVVI 88 (455)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHH---HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHH
Confidence 445677888877777776666667778889999999999998888 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHH-HHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008137 102 GADVLFFIGAIIMAIAPQPWVIIL-GRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT 180 (576)
Q Consensus 102 ~~~~~~~i~~~~~~~~~~~~~l~~-~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~ 180 (576)
++.+++++++++++++++++.+++ .|+++|++.+...+....++.++++ ++|+++.++.+.+..+|..+++++++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~ 167 (455)
T TIGR00892 89 AGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLF 167 (455)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999998875 5799999999877888888999996 78999999999999999999999999988
Q ss_pred CCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchh
Q 008137 181 KAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKD 260 (576)
Q Consensus 181 ~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (576)
+..+ ||+.|++.+++.++..+..+++.+.+.... +.+.++ .+ ........+ +. .... ..++
T Consensus 168 ~~~g-wr~~f~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~-~~---~~~~~~~~~-~~---------~~~~---~~~~ 228 (455)
T TIGR00892 168 ESFG-WRGSFLILGGLLLHCCVCGALMRPVGPSQR-VSKSKS-KE---GLPPDGSTK-KL---------SKKS---TAEK 228 (455)
T ss_pred HHhC-hHHHHHHHHHHHHHHHHHHHHhCCCCcccc-cccccc-cc---cCCCCCccc-cc---------cccc---hhhh
Confidence 8776 999999999887766555444332211000 000000 00 000000000 00 0000 0000
Q ss_pred hHHHh--hhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhc
Q 008137 261 MISRL--KGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVD 338 (576)
Q Consensus 261 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d 338 (576)
. .+. .+.++++.+ +......+....+......+.|.|.++.+. +...++.+....+++.+++.++.+++.|
T Consensus 229 ~-~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~d 301 (455)
T TIGR00892 229 I-NRFLDFSLFTHRGF-----LVYLSGNVIMFLGFFAPIIFLVPYAKDKGV-DEYEAAFLLSIIGFVDIFARPSCGLIAG 301 (455)
T ss_pred h-hhhcchHHhcCchH-----HHHHHHHHHHHHHccchHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 000 123444433 222223333333445556677888877665 6677778878888889999999999999
Q ss_pred cc--CChHHHHHHH--HHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccC
Q 008137 339 KY--GRRRLMIVSM--FGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCA 414 (576)
Q Consensus 339 k~--grr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (576)
|. ++|+....+. ++..++.+++....
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~-------------------------------------------------- 331 (455)
T TIGR00892 302 LKWIRPHVQYLFSFALLFNGLTHLLCALAG-------------------------------------------------- 331 (455)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHhc--------------------------------------------------
Confidence 74 3343333322 22222222221110
Q ss_pred CCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhH
Q 008137 415 HKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGI 494 (576)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~ 494 (576)
..+..++...+.+++++ ...+....+..|.+|++.+++..|+
T Consensus 332 -------------------------------------~~~~~~i~~~~~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~ 373 (455)
T TIGR00892 332 -------------------------------------DYTGLVIYCIFFGLSFG-SVGALLFEVLMDLVGAQRFSSAVGL 373 (455)
T ss_pred -------------------------------------hHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHhhHHHHhhHHhH
Confidence 01333334444444443 3334556777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHH
Q 008137 495 AAVSNWTSNLIVSLTFLTLTEALG-SAGTFLLFAGFSLLGLVAI 537 (576)
Q Consensus 495 ~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~ 537 (576)
.+....+|.+++|.+.|.+.+..| +...|++.+++.+++.+..
T Consensus 374 ~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 374 VTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL 417 (455)
T ss_pred HHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence 999999999999999999999874 7778888877776665543
No 32
>PRK10489 enterobactin exporter EntS; Provisional
Probab=100.00 E-value=5.7e-31 Score=281.51 Aligned_cols=383 Identities=15% Similarity=0.089 Sum_probs=281.9
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 008137 37 GGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAI 116 (576)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 116 (576)
+.++..+......+.+|.+.++++.+..+. |++.+.+.++..+++++.|+++||+|||+++.++.++.+++.+..+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~ 101 (417)
T PRK10489 25 ARFISIFGLGLLGVAVPVQIQMMTGSTLQV---GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLAL 101 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHH
Confidence 345566666778888999999998877776 99999999999999999999999999999999988888877665542
Q ss_pred -----cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 008137 117 -----APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLG 191 (576)
Q Consensus 117 -----~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~ 191 (576)
.++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+...++|..+|+.+++.+.+..+ |||.|+
T Consensus 102 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~~ 180 (417)
T PRK10489 102 NAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNYG 180 (417)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHHH
Confidence 56789999999999999998889999999999999999999999999999999999999999887665 999999
Q ss_pred HhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhccc
Q 008137 192 VAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGN 271 (576)
Q Consensus 192 v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (576)
+.++..++..+..+.+|++++....++ +.. ++..+..+..+++
T Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~-----------------------------------~~~~~~~~~~~~~ 223 (417)
T PRK10489 181 LAAAGTFITLLPLLRLPALPPPPQPRE--HPL-----------------------------------RSLLAGFRFLLAS 223 (417)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcccc--cch-----------------------------------HHHHHHHHHHHcC
Confidence 988877776666667777543110000 000 0000222334444
Q ss_pred chhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHH
Q 008137 272 KIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMF 351 (576)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~ 351 (576)
+..+...+.. .+. . .......+.|.+.++..+.+....+.+.....++.+++.++.+++.||.++++.+..+..
T Consensus 224 ~~~~~~~~~~----~~~-~-~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~ 297 (417)
T PRK10489 224 PVVGGIALLG----GLL-T-MASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTL 297 (417)
T ss_pred hHHHHHHHHH----HHH-H-HHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHH
Confidence 4333221111 111 1 123455677888888444467777888788888899999999999999777777777666
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccc
Q 008137 352 GLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKS 431 (576)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (576)
+..++.+++.....
T Consensus 298 ~~~~~~~~~~~~~~------------------------------------------------------------------ 311 (417)
T PRK10489 298 GSFLAVGLFGLMPM------------------------------------------------------------------ 311 (417)
T ss_pred HHHHHHHHHHccch------------------------------------------------------------------
Confidence 66555544332211
Q ss_pred cccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHH
Q 008137 432 TDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFL 511 (576)
Q Consensus 432 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~ 511 (576)
.+...+..++++.+.+ ...+...++..|..|++.||+++|+.+....+|..++|.+.|
T Consensus 312 ---------------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G 369 (417)
T PRK10489 312 ---------------------WILAVLCLALFGYLSA-ISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLG 369 (417)
T ss_pred ---------------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHH
Confidence 1222233333333222 112344567789999999999999999999999999999999
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 008137 512 TLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVEK 554 (576)
Q Consensus 512 ~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 554 (576)
.+.+..|....+++.+++.++..++.+...+++|+++.+|.|+
T Consensus 370 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 370 GLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV 412 (417)
T ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 9999999988888888877777777777788888877766543
No 33
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=100.00 E-value=1.5e-30 Score=280.12 Aligned_cols=408 Identities=15% Similarity=0.114 Sum_probs=277.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 008137 26 YIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADV 105 (576)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~ 105 (576)
.++..+....+.....+.++..+....|.+.+ +|.+..+. +++.+++.++..+++++.|+++||+|||+.+.++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~ 99 (438)
T TIGR00712 24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGEL---GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHh---HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHH
Confidence 35666677777778888888888888888776 58888888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008137 106 LFFIGAIIMAIA----PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTK 181 (576)
Q Consensus 106 ~~~i~~~~~~~~----~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~ 181 (576)
+.+++.+++++. ++++.+.+.|++.|++.|..++....++.|++|+++|++++++++.+..+|..+++.+.+....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~ 179 (438)
T TIGR00712 100 LSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA 179 (438)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999887764 4677888999999999999999999999999999999999999999999999998887765444
Q ss_pred CCchhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchh
Q 008137 182 APGTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKD 260 (576)
Q Consensus 182 ~~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (576)
...+||+.|++.++++++..+. ++++||+|+....+...+. +. +...+. . ++.+.+...++
T Consensus 180 ~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~-------~-~~~~~~~~~~~ 241 (438)
T TIGR00712 180 WFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEY-RN---------DYPDDY-------N-EKAEQELTAKE 241 (438)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhc-cc---------cccccc-------c-cccccccchHH
Confidence 3235999999988887775544 5667887653211110000 00 000000 0 00000000000
Q ss_pred hHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhccc
Q 008137 261 MISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKY 340 (576)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~ 340 (576)
...+..++++..+ .......+.+...+.+..|.|.|+++..+.+...++.......+.++++.+++|+++||+
T Consensus 242 --~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~ 314 (438)
T TIGR00712 242 --IFMQYVLPNKLLW-----YIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 314 (438)
T ss_pred --HHHHHHccCchHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0011234444332 233333333444556777889999876555777777777888888999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCC
Q 008137 341 GRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEY 420 (576)
Q Consensus 341 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (576)
++++....+........+........
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 340 (438)
T TIGR00712 315 FKGNRGATGVFFMTLVTIAVIVYWMN------------------------------------------------------ 340 (438)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHhc------------------------------------------------------
Confidence 65432222332222221111111110
Q ss_pred CCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHH
Q 008137 421 LPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNW 500 (576)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~ 500 (576)
+....+.....++..+... .+..........|.+|++.||++.|+.+..++
T Consensus 341 ----------------------------~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 391 (438)
T TIGR00712 341 ----------------------------PAGNPLVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGY 391 (438)
T ss_pred ----------------------------CCCchHHHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHH
Confidence 0000122222222222211 11111222356799999999999999999888
Q ss_pred HHH-HHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCC
Q 008137 501 TSN-LIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETK 545 (576)
Q Consensus 501 ~g~-~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 545 (576)
+++ +++|.+.|.+.|..|+..++++..++.+++.+..++++||.|
T Consensus 392 ~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 392 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 875 689999999999999998999888888888888888888765
No 34
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=1.1e-30 Score=258.25 Aligned_cols=437 Identities=18% Similarity=0.221 Sum_probs=322.9
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008137 15 TECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF 94 (576)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~ 94 (576)
++..+.....+.+|........+.+...+-....+-+.|...+.++.+..+. .++......|..+++..+|.++|++
T Consensus 64 ~ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~---~llt~~v~~gmllga~~w~l~~d~~ 140 (528)
T KOG0253|consen 64 DEAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQA---PLLTLSVFLGMLVGAMVWGLSADTI 140 (528)
T ss_pred hhhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhh---hHHHHHHHhhhhhhhhhhheehhhh
Confidence 3455666778889999999999988888887888888899999999888888 9999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH
Q 008137 95 GRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYL 174 (576)
Q Consensus 95 Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~ 174 (576)
|||+.+.++.+..++...+.+.++|+.+++++|.+.|+|.|+ .|...++-.|..|..+|..-+-.. ..+.+|.+....
T Consensus 141 grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~ 218 (528)
T KOG0253|consen 141 GRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEAL 218 (528)
T ss_pred hcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 899999999999999998876666 899999999999
Q ss_pred HHHHhcCCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHH-----HHHHHHHHh
Q 008137 175 INLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEV-----NLLKQSVEN 249 (576)
Q Consensus 175 l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~-----~~~~~~~~~ 249 (576)
+.-......| |||.....+.+..+.....+++|||||+...++++.++.+.++++...|....+. ....+..++
T Consensus 219 law~vm~~~g-wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e 297 (528)
T KOG0253|consen 219 LAWGVMSNFG-WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQE 297 (528)
T ss_pred HHHHHHHhhh-HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhh
Confidence 9888888776 9999999888888878888899999999999999999999888886654322111 000000000
Q ss_pred hh---hhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhc------------------
Q 008137 250 EK---AEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAG------------------ 308 (576)
Q Consensus 250 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 308 (576)
+. +.+....++...+...++.. .+|++.+....+++...+..+..+.. .....+...
T Consensus 298 ~~~~~~~~~~a~ke~rg~~~nLlsp-~lrkttlllw~iwfgnafsyyg~VLl-ttelfqsgd~c~~~~r~~p~e~e~~~~ 375 (528)
T KOG0253|consen 298 ESDLDDSKSSAAKEVRGGTTNLLSP-KLRKTTLLLWRIWFGNAFSYYGSVLL-TTELFQSGDACPLYNRFLPTELETRAN 375 (528)
T ss_pred hhchhhhhhccccccccchHhhcCh-HHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHhccCccccchhcchhHHHhhhc
Confidence 00 00011112222344444443 34555555455544433332222221 122222110
Q ss_pred -CCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCC
Q 008137 309 -FASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNT 387 (576)
Q Consensus 309 -~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (576)
-.+......=..+..+...+|.++.++++||+|||+.+...+++..++.+++......
T Consensus 376 c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~r--------------------- 434 (528)
T KOG0253|consen 376 CPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTR--------------------- 434 (528)
T ss_pred CCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCc---------------------
Confidence 0111222333356677789999999999999999999998888877776655443221
Q ss_pred CCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHh
Q 008137 388 CPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITY 467 (576)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 467 (576)
....+.++..-++.
T Consensus 435 ------------------------------------------------------------------n~~tvllf~arafi 448 (528)
T KOG0253|consen 435 ------------------------------------------------------------------NAYTVLLFTARAFI 448 (528)
T ss_pred ------------------------------------------------------------------chhHHHHHHHHHHH
Confidence 11122222222222
Q ss_pred cCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 008137 468 SPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGL 547 (576)
Q Consensus 468 ~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 547 (576)
.+.....+.|..|+||+..|+++.|.+...+++|+++.|.+. +........+..+++++++++.+++.++.-|||+|
T Consensus 449 -sg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR 525 (528)
T KOG0253|consen 449 -SGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGR 525 (528)
T ss_pred -hchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCC
Confidence 234457789999999999999999999999999999999988 44444556678888999999988888888899998
Q ss_pred CH
Q 008137 548 AF 549 (576)
Q Consensus 548 ~~ 549 (576)
+.
T Consensus 526 ~l 527 (528)
T KOG0253|consen 526 SL 527 (528)
T ss_pred CC
Confidence 64
No 35
>PRK10091 MFS transport protein AraJ; Provisional
Probab=100.00 E-value=4.6e-30 Score=271.39 Aligned_cols=371 Identities=15% Similarity=0.097 Sum_probs=266.7
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 008137 30 LALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFI 109 (576)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i 109 (576)
.+..+.++.+..++......+.+|.+.+|+|.+..+. |++.+++.+++.+++++.|++.||+|||+++.++.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAA---GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI 80 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHH---hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHH
Confidence 3455667778888888899999999999999998888 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Q 008137 110 GAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWM 189 (576)
Q Consensus 110 ~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~ 189 (576)
+.++++++++++.+++.|+++|++.+...+....++.|++|+++|+++++....+..+|..+++++++.+.+..+ ||+.
T Consensus 81 ~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~ 159 (382)
T PRK10091 81 GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYT 159 (382)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888776 9999
Q ss_pred HHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhh
Q 008137 190 LGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGA 268 (576)
Q Consensus 190 f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (576)
|++.+++.++..+. ++.+||.++. + +.+. + +. .+.
T Consensus 160 f~~~~~~~~~~~~~~~~~lp~~~~~---~-~~~~-~--------------------------------------~~-~~~ 195 (382)
T PRK10091 160 FLLIAVFNIAVLASIYFWVPDIRDE---A-KGGL-R--------------------------------------EQ-FHF 195 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcc---c-ccCH-H--------------------------------------HH-HHH
Confidence 99998877666554 4557775320 0 0000 0 00 011
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHH
Q 008137 269 FGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIV 348 (576)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~ 348 (576)
++++..+ . ..........+......+.+.++++..+.+..+.+.+.....++.+++.++.+++.||+++|+.+..
T Consensus 196 ~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~ 270 (382)
T PRK10091 196 LRSPAPW----L-IFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAV 270 (382)
T ss_pred hcChHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHH
Confidence 2222211 1 1111112222222333344555554434477778888888889999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccc
Q 008137 349 SMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLID 428 (576)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (576)
+..+.+++.+++......
T Consensus 271 ~~~~~~i~~~~~~~~~~~-------------------------------------------------------------- 288 (382)
T PRK10091 271 TDFIIVLALLMLFFFGGM-------------------------------------------------------------- 288 (382)
T ss_pred HHHHHHHHHHHHHHHHhh--------------------------------------------------------------
Confidence 877776666544332110
Q ss_pred ccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHH
Q 008137 429 EKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSL 508 (576)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~ 508 (576)
.+...+...+...++.....+.......+..|++.++.+ ..+....+|..++|.
T Consensus 289 ------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~ 342 (382)
T PRK10091 289 ------------------------KTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAY 342 (382)
T ss_pred ------------------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHH
Confidence 122222222222222211122222333444455555443 346778999999999
Q ss_pred HHHHHHHh-hccchhhHHHHHHHHHHHHHHHhhc
Q 008137 509 TFLTLTEA-LGSAGTFLLFAGFSLLGLVAIYLLV 541 (576)
Q Consensus 509 ~~~~l~~~-~g~~~~~~~~~~~~~i~~~~~~~~~ 541 (576)
+.|.+.|. .++...+.+.++++++.......+.
T Consensus 343 ~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (382)
T PRK10091 343 CGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYG 376 (382)
T ss_pred HhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 99999996 5777777777766666555444433
No 36
>TIGR00895 2A0115 benzoate transport.
Probab=100.00 E-value=2.1e-30 Score=273.32 Aligned_cols=389 Identities=22% Similarity=0.231 Sum_probs=275.0
Q ss_pred HhhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHH
Q 008137 20 IVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKIS 99 (576)
Q Consensus 20 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~ 99 (576)
..+.++++|+.+....+..+..+++....+...|.+.+++|.+..+. +++.+++.++..+++++.|+++||+|||+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 84 (398)
T TIGR00895 8 KQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL---GFLFSAGLIGMAFGALFFGPLADRIGRKRV 84 (398)
T ss_pred hCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHH---HHHHHHHHHHHHHHHHHhHHHHHHhhhHHH
Confidence 34445567777777778888888999999999999999999988887 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137 100 LLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF 179 (576)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l 179 (576)
+.++.++.+++.++.+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 164 (398)
T TIGR00895 85 LLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164 (398)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHhHHHHHHHHH-HHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccc
Q 008137 180 TKAPGTWRWMLGVAGLPAVVQFG-LMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIG 258 (576)
Q Consensus 180 ~~~~~~Wr~~f~v~~~~~~~~~~-~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (576)
.+..+ ||+.|++.+++.++..+ .++++||++++..++ +.++.++..++.......+. ..+..+++...
T Consensus 165 ~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 233 (398)
T TIGR00895 165 IPVFG-WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEA---------QSALPEQKATQ 233 (398)
T ss_pred hhccc-ceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccc---------ccccccccccc
Confidence 88776 99999998755555444 466788887654433 22222222211110000000 00000000000
Q ss_pred hhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhc
Q 008137 259 KDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVD 338 (576)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d 338 (576)
.......+..++++..+. .+. .................+.|.+.++.+. +....+.......++.+++.++.++++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (398)
T TIGR00895 234 GTKRSVFKALFQGKTARI-TVL-LWLLYFMLLVGVYFLTNWLPKLMVELGF-SLSLAATGGALFNFGGVIGSIIFGWLAD 310 (398)
T ss_pred chhhHHHHHHhcchhHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000011222233322222 222 2222233444455667778877776666 5667777778888899999999999999
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCC
Q 008137 339 KYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGN 418 (576)
Q Consensus 339 k~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (576)
|++||+..... .+..+...++.....
T Consensus 311 ~~~~~~~~~~~-~~~~~~~~~~~~~~~----------------------------------------------------- 336 (398)
T TIGR00895 311 RLGPRVTALLL-LLGAVFAVLVGSTLF----------------------------------------------------- 336 (398)
T ss_pred hcchHHHHHHH-HHHHHHHHHHHHHhh-----------------------------------------------------
Confidence 99998544433 333333222222110
Q ss_pred CCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHH
Q 008137 419 EYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVS 498 (576)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~ 498 (576)
..+......++.+.+.+ +..+...++..|.+|++.||++.|+.+..
T Consensus 337 ---------------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 382 (398)
T TIGR00895 337 ---------------------------------SPTLLLLLGAIAGFFVN-GGQSGLYALMALFYPTAIRATGVGWAIGI 382 (398)
T ss_pred ---------------------------------CHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 01222333334444333 23445667889999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 008137 499 NWTSNLIVSLTFLTL 513 (576)
Q Consensus 499 ~~~g~~~~~~~~~~l 513 (576)
..+|..++|.+.|.+
T Consensus 383 ~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 383 GRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHhHHhc
Confidence 999999999998865
No 37
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=100.00 E-value=2e-29 Score=268.48 Aligned_cols=387 Identities=14% Similarity=0.090 Sum_probs=278.0
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHH
Q 008137 24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGA 103 (576)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~ 103 (576)
++..+.....+.+..++..++...+.+.+|.+.++++.+..+. ++..+.+.+++.+++++.|+++||+|||+++.++
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 84 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWV---PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAG 84 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 4566777778888888889999999999999999999988887 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008137 104 DVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP 183 (576)
Q Consensus 104 ~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~ 183 (576)
.++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|.++.++......+|..++|.+++.+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~ 164 (406)
T PRK15402 85 VAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL 164 (406)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999988999999999999999999999998888899999999999988876
Q ss_pred chhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhH
Q 008137 184 GTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMI 262 (576)
Q Consensus 184 ~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (576)
+ ||+.|++.+++.++..+. ++..||+++...++.+ .++..
T Consensus 165 ~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~ 205 (406)
T PRK15402 165 P-WRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLS--------------------------------------LKELG 205 (406)
T ss_pred C-ccHHHHHHHHHHHHHHHHHHHhCCCCCcccccccc--------------------------------------HHHHH
Confidence 6 999999988887766554 4456766431100000 00011
Q ss_pred HHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCC
Q 008137 263 SRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGR 342 (576)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~gr 342 (576)
++.+..++++..+.. ................+.|.++.+..+.+..+.+.......++.+++.++.+++.||+++
T Consensus 206 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~ 280 (406)
T PRK15402 206 RDYKLVLKNRRFVAG-----ALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPL 280 (406)
T ss_pred HHHHHHHcCcHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 333455555543322 111212222223344456777655434466666666666677788999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCC
Q 008137 343 RRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLP 422 (576)
Q Consensus 343 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (576)
|+.+..+.++..++.+++........
T Consensus 281 ~~~~~~~~~~~~~g~~~~~~~~~~~~------------------------------------------------------ 306 (406)
T PRK15402 281 RSLIRMGLWPMVAGLLLAALATVISS------------------------------------------------------ 306 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccc------------------------------------------------------
Confidence 99988887777776666555421100
Q ss_pred CcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHH
Q 008137 423 GACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTS 502 (576)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g 502 (576)
...++.+....+.+.+.+... +........ .+++.||+..++.+....++
T Consensus 307 ----------------------------~~~~~~~~~~~~~g~g~~~~~-~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~ 356 (406)
T PRK15402 307 ----------------------------HAYLWLTAGLSLYAFGIGLAN-AGLYRLTLF-SSDVSKGTVSAAMGMLSMLI 356 (406)
T ss_pred ----------------------------ccHHHHHHHHHHHHHHHHHHh-hhHHHHHhh-hccccccHHHHHHHHHHHHH
Confidence 001222333333333333222 222233222 34588999999999999999
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhc
Q 008137 503 NLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLV 541 (576)
Q Consensus 503 ~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 541 (576)
..+++.+.+.+.+..+.....+...+..++..++...+.
T Consensus 357 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK15402 357 FTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFL 395 (406)
T ss_pred HHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998887765544444444444444333333
No 38
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=100.00 E-value=5.8e-30 Score=271.88 Aligned_cols=365 Identities=18% Similarity=0.139 Sum_probs=264.8
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 008137 29 KLALSAGIGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLF 107 (576)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~ 107 (576)
+.+..+.+..++..++..+..+.+|. +.++++.++.+. |++.+++.+++.+++++.|+++||+|||+++.++.+++
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~ 91 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLA---GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGC 91 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH---HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHH
Confidence 44555667778888888999999997 578899988888 99999999999999999999999999999999999998
Q ss_pred HHHHHHHHhc--------chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137 108 FIGAIIMAIA--------PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF 179 (576)
Q Consensus 108 ~i~~~~~~~~--------~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l 179 (576)
++++++++++ .+++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l 171 (399)
T PRK05122 92 ALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL 171 (399)
T ss_pred HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence 8887766553 25778999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccch
Q 008137 180 TKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGK 259 (576)
Q Consensus 180 ~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (576)
.+..+ ||+.+++.+++.++.++.....|++++ .+++.
T Consensus 172 ~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------------------------------------- 208 (399)
T PRK05122 172 YHWGG-LAGLGLLIMLLALLGLLLARPRPAVPP---VKGER--------------------------------------- 208 (399)
T ss_pred HHccc-HHHHHHHHHHHHHHHHHHHhcCCCCCC---CCccc---------------------------------------
Confidence 88776 999998877665544433333333221 00000
Q ss_pred hhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc
Q 008137 260 DMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDK 339 (576)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk 339 (576)
.+.++.+++ .+..... .......+.....+.+.++++.+. + ..+.......++.+++.++.+++.||
T Consensus 209 ---~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~g~l~~r 275 (399)
T PRK05122 209 ---LPFRRVLGR--VWPYGMG-----LALASIGFGTIATFITLYYAARGW-D--GAALALTLFGVAFVGARLLFGNLINR 275 (399)
T ss_pred ---hhHHHHHHH--HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHccc-c--cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 0110010 111122233444566666666554 2 23344456677788899999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCC
Q 008137 340 YGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNE 419 (576)
Q Consensus 340 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (576)
+++|+.+..+..+..++.+++.....
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 301 (399)
T PRK05122 276 LGGLRVAIVSLLVEILGLLLLWLAPS------------------------------------------------------ 301 (399)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhcc------------------------------------------------------
Confidence 99999888777776766655443211
Q ss_pred CCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHH
Q 008137 420 YLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSN 499 (576)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~ 499 (576)
.+..++...+.+++++ ...+.......|..|++.||++.|+.+...
T Consensus 302 ---------------------------------~~~~~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 347 (399)
T PRK05122 302 ---------------------------------PWMALIGAALTGFGFS-LVFPALGVEAVKRVPPQNRGAALGAYSVFL 347 (399)
T ss_pred ---------------------------------HHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 1222333333333333 223333345568889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhh
Q 008137 500 WTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLL 540 (576)
Q Consensus 500 ~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~ 540 (576)
.+|..+++.+.|.+.+..|++..+++.+++.+++.+..+++
T Consensus 348 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 348 DLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999989998888888877766554
No 39
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.98 E-value=4.3e-29 Score=265.08 Aligned_cols=367 Identities=14% Similarity=0.080 Sum_probs=261.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 008137 27 IMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVL 106 (576)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~ 106 (576)
.|+.+..+.++.+..........+.+|.+.++++.++.+. ++..+++.++..+++++.|++.||+|||+++..+.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~ 94 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVA---GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVL 94 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 5555555555555555565677778999999999999888 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 008137 107 FFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTW 186 (576)
Q Consensus 107 ~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~W 186 (576)
.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|..+++++++.+.+..+ |
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w 173 (394)
T PRK10213 95 LTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-W 173 (394)
T ss_pred HHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998877 9
Q ss_pred HHHHHHhHHHHHHHHHHH-hhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHh
Q 008137 187 RWMLGVAGLPAVVQFGLM-MMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRL 265 (576)
Q Consensus 187 r~~f~v~~~~~~~~~~~~-~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (576)
|+.|++.++++++..+.. ..+||+|+. +++ +. ++.
T Consensus 174 ~~~f~~~~~l~~~~~l~~~~~~p~~~~~---~~~-~~----------------------------------------~~~ 209 (394)
T PRK10213 174 RNVFNAAAVMGVLCIFWIIKSLPSLPGE---PSH-QK----------------------------------------QNT 209 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCcc---ccc-ch----------------------------------------hHH
Confidence 999999887776654443 346665321 000 00 111
Q ss_pred hhhcccchhhhhhHHHHHHHHHHHHHhhHHH-HhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChH
Q 008137 266 KGAFGNKIVRRGLYAGVTVQVAQQFVGINTV-MYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRR 344 (576)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~ 344 (576)
++.++++..+... ...+..+...... .+..|.+.++.+. +....+.......++.+++.++.+++.||.++ +
T Consensus 210 ~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~ 282 (394)
T PRK10213 210 FRLLQRPGVMAGM-----IAIFMSFAGQFAFFTYIRPVYMNLAGF-GVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-L 282 (394)
T ss_pred HHHhcCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-h
Confidence 2334444333211 1112222222233 3335777766665 66667777777888899999999999999544 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCc
Q 008137 345 LMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGA 424 (576)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (576)
.+..+..+...+.+++.....
T Consensus 283 ~l~~~~~~~~~~~~~l~~~~~----------------------------------------------------------- 303 (394)
T PRK10213 283 ALAGAPLVLAVSALVLTLWGS----------------------------------------------------------- 303 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-----------------------------------------------------------
Confidence 433333333333222222111
Q ss_pred ccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHH
Q 008137 425 CLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNL 504 (576)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~ 504 (576)
..+.......+.+.++... .+...++..+..| +.++...++......+|..
T Consensus 304 ---------------------------~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~ 354 (394)
T PRK10213 304 ---------------------------DKIVATGVAIIWGLTFALV-PVGWSTWITRSLA-DQAEKAGSIQVAVIQLANT 354 (394)
T ss_pred ---------------------------hHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHH
Confidence 0133333444444444322 2333345566666 4466777878888899999
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Q 008137 505 IVSLTFLTLTEALGSAGTFLLFAGFSLLGLVA 536 (576)
Q Consensus 505 ~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~ 536 (576)
+++.+.|.+.|..|++..+...+.+.++..++
T Consensus 355 ~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 355 CGAAIGGYALDNIGLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred HHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence 99999999999999887777766655554433
No 40
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.98 E-value=6.2e-30 Score=278.13 Aligned_cols=385 Identities=15% Similarity=0.048 Sum_probs=254.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137 25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD 104 (576)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~ 104 (576)
+.+++.+....+..++..++....++..|.+.+++|.+..+. +++.+++.+++.+++++.|+++||+|||+++..+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~ 108 (476)
T PLN00028 32 RPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDI---GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLL 108 (476)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 344556666666677777788888999999999999998888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhc----
Q 008137 105 VLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT---- 180 (576)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~---- 180 (576)
++++++.++++++++++.++++|+++|++.+... ....+++|++|+++|++++++.+....+|..+++.+.+.+.
T Consensus 109 ~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~ 187 (476)
T PLN00028 109 MLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIK 187 (476)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988654 45678999999999999999998777777766655554332
Q ss_pred CC----CchhHHHHHHhHHHHHHHHHHHhhccC-ChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhc
Q 008137 181 KA----PGTWRWMLGVAGLPAVVQFGLMMMLPE-SPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEG 255 (576)
Q Consensus 181 ~~----~~~Wr~~f~v~~~~~~~~~~~~~~l~e-sp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (576)
.. ..+||+.|++.++++++..+..+++++ .|+. +.++.++ +.+.+
T Consensus 188 ~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~-----~~~~~~~------------------------~~~~~- 237 (476)
T PLN00028 188 DAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDG-----NYRELKK------------------------SGTMP- 237 (476)
T ss_pred hcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCC-----chhhHHh------------------------cCccc-
Confidence 11 125999999999988877666555543 3320 0000000 00000
Q ss_pred ccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHH
Q 008137 256 LIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMA 335 (576)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~ 335 (576)
.......+++.++++..+. +....+.++.....+..+.|.++.+..+.+...++.+.....++++++++++|+
T Consensus 238 --~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~ 310 (476)
T PLN00028 238 --KDSFSKVLRYGVTNYRTWI-----LALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGY 310 (476)
T ss_pred --cccHHHHHHHHHcCchhHH-----HHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 0000122333344433221 222222233333445667788776654447778888888889999999999999
Q ss_pred hhcccCChH-------HHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccc
Q 008137 336 FVDKYGRRR-------LMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKA 408 (576)
Q Consensus 336 l~dk~grr~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (576)
++||++||+ ......++..++.+++....
T Consensus 311 lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~-------------------------------------------- 346 (476)
T PLN00028 311 LSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRAN-------------------------------------------- 346 (476)
T ss_pred HHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccc--------------------------------------------
Confidence 999998652 11111121111111111110
Q ss_pred cccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccccccc
Q 008137 409 KCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYR 488 (576)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 488 (576)
..+..++.++++..+...+ .+..+.+..++. ++.+
T Consensus 347 -------------------------------------------~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~-~~~~ 381 (476)
T PLN00028 347 -------------------------------------------SLGAAIVVMILFSIFVQAA-CGATFGIVPFVS-RRSL 381 (476)
T ss_pred -------------------------------------------hHHHHHHHHHHHHHHHHHh-hhhhcccCcccC-hhhc
Confidence 0122222233333322211 123345556665 4789
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhh
Q 008137 489 GVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLL 540 (576)
Q Consensus 489 g~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~ 540 (576)
|+..|+.+..+.+|+++++.+.+ ..+..++...|++.+++.+++.++.++.
T Consensus 382 g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 382 GVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred hhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 99999998888888888777654 2223457788888888888877666443
No 41
>PRK10504 putative transporter; Provisional
Probab=99.98 E-value=2.7e-29 Score=272.78 Aligned_cols=388 Identities=14% Similarity=0.165 Sum_probs=273.7
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 008137 30 LALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFI 109 (576)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i 109 (576)
.+..++++.++..++...+++.+|.+.+++|.+..+. +++.+.+.++..++.+++|+++||+|||++++.+.+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~ 87 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHM---HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTL 87 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 3455667788899999999999999999999998888 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Q 008137 110 GAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWM 189 (576)
Q Consensus 110 ~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~ 189 (576)
+.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++.+...++|..+++.+++.+.+..+ ||+.
T Consensus 88 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~ 166 (471)
T PRK10504 88 GSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWI 166 (471)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988776 9999
Q ss_pred HHHhHHHHHHHHHHH-hhccCChhHHhhcCCHHHHHHHHHH---------hCCchh--hhH-HHHH--------HHHHHH
Q 008137 190 LGVAGLPAVVQFGLM-MMLPESPRWLYRQNKVDEARAILEK---------IYPADQ--VEE-EVNL--------LKQSVE 248 (576)
Q Consensus 190 f~v~~~~~~~~~~~~-~~l~esp~~l~~~~~~~~~~~~l~~---------i~~~~~--~~~-~~~~--------~~~~~~ 248 (576)
|++......+..+.. ...|+.+. .+.+.+........ ..+.+. ... .... ......
T Consensus 167 f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (471)
T PRK10504 167 FLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLL 243 (471)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 999887766665553 34454432 11122221111000 000000 000 0000 000000
Q ss_pred hhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHH
Q 008137 249 NEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNAL 328 (576)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 328 (576)
+++... ++ ..+ .++++++.++. .....+..........++.|+|++...+.+....++......++.++
T Consensus 244 ~~~~~~----~~-~~~-~~l~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 312 (471)
T PRK10504 244 HARNNN----RA-LFS-LKLFRTRTFSL-----GLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMG 312 (471)
T ss_pred HHhcCC----CC-ccC-HHHhcccchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 000000 00 011 12445544332 33333333344556667788888865555777888887887888888
Q ss_pred HHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccc
Q 008137 329 GSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKA 408 (576)
Q Consensus 329 g~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (576)
+.++.+++.||+|||+++..+..+..+...++.....
T Consensus 313 ~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------- 349 (471)
T PRK10504 313 MKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVAL------------------------------------------- 349 (471)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccc-------------------------------------------
Confidence 8899999999999999998887776666554443210
Q ss_pred cccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccccccc
Q 008137 409 KCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYR 488 (576)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 488 (576)
.+..+...+...+.+.+.+... +....+..+..|++.+
T Consensus 350 -----------------------------------------~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~ 387 (471)
T PRK10504 350 -----------------------------------------LGWYYLLPFVLFLQGMVNSTRF-SSMNTLTLKDLPDNLA 387 (471)
T ss_pred -----------------------------------------cccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCHHhc
Confidence 0001222222222223333222 2344666788899999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008137 489 GVGGGIAAVSNWTSNLIVSLTFLTLTEALGSA 520 (576)
Q Consensus 489 g~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~ 520 (576)
|.++|+.++...+|..+++.+.+.+.+..|+.
T Consensus 388 g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 388 SSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999998877653
No 42
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.97 E-value=1.8e-29 Score=274.75 Aligned_cols=386 Identities=15% Similarity=0.135 Sum_probs=277.7
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 008137 30 LALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFI 109 (576)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i 109 (576)
.+..++++.++..+|....++.+|.+.+++|.+..+. +++.+.+.++..++.++.|+++||+|||++++++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 79 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQV---QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTL 79 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh---hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 4566778889999999999999999999999988888 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Q 008137 110 GAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWM 189 (576)
Q Consensus 110 ~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~ 189 (576)
++++++++++++.++++|+++|++.+...+...+++.|++|+++|++++++++....+|..+++.+++.+.+..+ ||+.
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~ 158 (485)
T TIGR00711 80 GSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWI 158 (485)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-ceeh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998877 9999
Q ss_pred HHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHH-----------HhCCchh---hhHHHHHHH--------HH
Q 008137 190 LGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILE-----------KIYPADQ---VEEEVNLLK--------QS 246 (576)
Q Consensus 190 f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~-----------~i~~~~~---~~~~~~~~~--------~~ 246 (576)
|++.++++++..+. ++++||+++. .+++.|....... ......+ ......... ..
T Consensus 159 f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (485)
T TIGR00711 159 FLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFV 236 (485)
T ss_pred hhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 99988887766555 4456664431 1112222111000 0000000 000000000 00
Q ss_pred HHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHH
Q 008137 247 VENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLN 326 (576)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (576)
..+...+++. . ..+.++++.++. .....+..........++.|.++++..+.+..+++.......++.
T Consensus 237 ~~~~~~~~~~------~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~ 304 (485)
T TIGR00711 237 VWELTDDNPL------V-DLRLFKYRNFTI-----GCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAP 304 (485)
T ss_pred HHHHcCCCCc------c-CHHHHcCCChHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 0000000000 0 112344433322 233333334445566678899998876668888888888889999
Q ss_pred HHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccc
Q 008137 327 ALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCL 406 (576)
Q Consensus 327 ~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (576)
+++.++.|++.||++||+.+..+..+..++..++.+...
T Consensus 305 ~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~----------------------------------------- 343 (485)
T TIGR00711 305 MLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT----------------------------------------- 343 (485)
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC-----------------------------------------
Confidence 999999999999999999988887777766665442211
Q ss_pred cccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccccc
Q 008137 407 KAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLR 486 (576)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 486 (576)
|....+..+....+.+++.+....+.. ....+..|++
T Consensus 344 ------------------------------------------~~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~ 380 (485)
T TIGR00711 344 ------------------------------------------PDTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPH 380 (485)
T ss_pred ------------------------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHH
Confidence 000112223333333333332222333 4445678999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008137 487 YRGVGGGIAAVSNWTSNLIVSLTFLTLTEAL 517 (576)
Q Consensus 487 ~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~ 517 (576)
.+|++.|+.+....+|+.+++.+.+.+.++.
T Consensus 381 ~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 381 KIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988753
No 43
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.97 E-value=1.6e-30 Score=282.11 Aligned_cols=402 Identities=17% Similarity=0.110 Sum_probs=281.9
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH----------------------hhccchhhhHHHHHHHHHHHHHH
Q 008137 23 TTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKE----------------------DFRDVEKKTWLQELIVSMAVAGA 80 (576)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~----------------------~~~~~~~~~~~~g~i~s~~~~~~ 80 (576)
..+.||.++.++.++..+.+.|+..++...+.+.+ |++.+..+. |++.+.+.+++
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~s~~~~~~ 89 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQ---GLILSSHFYGQ 89 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHh---hHHHHHHHHHH
Confidence 46678889999999999999999999999988877 677777777 99999999999
Q ss_pred HHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHH
Q 008137 81 IFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIA--PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALV 158 (576)
Q Consensus 81 ~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~ 158 (576)
.+++++.|+++||+|||+++.++.++++++++++.++ .+++.+++.|+++|++.+...+....++.||+|+++|++++
T Consensus 90 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~ 169 (465)
T TIGR00894 90 IIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLL 169 (465)
T ss_pred HHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999999999999999887554 56888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhh-ccCChhHHhhcCCHHHHHHHHHHhCCchhhh
Q 008137 159 SANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMM-LPESPRWLYRQNKVDEARAILEKIYPADQVE 237 (576)
Q Consensus 159 ~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~-l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~ 237 (576)
++...+..+|.++++++.+.+.+...+||+.|++.++++++..+.++. .+|+|+..... +.++ ++
T Consensus 170 ~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~-~~------------ 235 (465)
T TIGR00894 170 GMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI-SKFE-KK------------ 235 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC-CHHH-HH------------
Confidence 999999999999999999999877423999999999988877766544 56666421111 1111 00
Q ss_pred HHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHH
Q 008137 238 EEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALA 317 (576)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (576)
...+..+.++... .. ..++++.++++. ++......+......+.+..|.|.|+++..+.+....++
T Consensus 236 ----~i~~~~~~~~~~~--~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~ 301 (465)
T TIGR00894 236 ----YINSSLQGQKGST--RQ---SLPIKAIPKSLP-----VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGL 301 (465)
T ss_pred ----HHHhhcccccCCC--CC---CCCHHHHhcCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHH
Confidence 0000000000000 00 022444454443 333444445555566777889999988765557788888
Q ss_pred HHHHHhHHHHHHHHHHHHhhcccCChHHHH---HHHHHHHHHH---HHHHHHHHHhhhcCCCccccccccCCCCCCCCcc
Q 008137 318 LSLVTSGLNALGSIVSMAFVDKYGRRRLMI---VSMFGLSSCL---VALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAY 391 (576)
Q Consensus 318 ~~~~~~~~~~ig~~~~g~l~dk~grr~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (576)
......++.+++.+++|+++||+++|+... ...+...++. .+..+......
T Consensus 302 ~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 358 (465)
T TIGR00894 302 LSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLS----------------------- 358 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------------------
Confidence 888889999999999999999876442110 0111111111 11111111000
Q ss_pred cccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCc
Q 008137 392 ITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGM 471 (576)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 471 (576)
...+..++.+.+...+.. +.
T Consensus 359 -----------------------------------------------------------~~~~~~~~~~~l~~~~~~-~~ 378 (465)
T TIGR00894 359 -----------------------------------------------------------AAFYLTIIILTLANAVSS-GP 378 (465)
T ss_pred -----------------------------------------------------------CchHHHHHHHHHHHHHhh-hh
Confidence 001222333333333222 22
Q ss_pred ccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHHHHh
Q 008137 472 GTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEAL---GSAGTFLLFAGFSLLGLVAIYL 539 (576)
Q Consensus 472 ~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~---g~~~~~~~~~~~~~i~~~~~~~ 539 (576)
.+..+....|..| +.+|.+.|+.++.+.++++++|.+.|.+.+.. ++...|.+.+++.+++.++..+
T Consensus 379 ~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 379 LAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred hhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 2233344556665 48999999999999999999999999887653 3666778887777777665543
No 44
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.97 E-value=6.4e-30 Score=281.39 Aligned_cols=396 Identities=22% Similarity=0.256 Sum_probs=283.0
Q ss_pred hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhh
Q 008137 59 FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMAS 138 (576)
Q Consensus 59 ~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~ 138 (576)
++.-+...+...+..+++++|..+|++++|+++||+|||++++.++++..++.++.++++|++.+++.|++.|++.++..
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 55555555555999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcC
Q 008137 139 MTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQN 218 (576)
Q Consensus 139 ~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~ 218 (576)
.....+++|++++++|+.+..+ ......|..+++++++++.. +|||.+++..+++++.++.+++.||+|||+..++
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g 265 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG 265 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC
Confidence 9999999999999999999999 66666777777888887776 5999999999999988888777789999999999
Q ss_pred CHHHHHHHHHHhCCch---hhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHH
Q 008137 219 KVDEARAILEKIYPAD---QVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINT 295 (576)
Q Consensus 219 ~~~~~~~~l~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (576)
+.+++.+.++++...+ ....+........+...... . +......++++.+..++..+.....++. +..
T Consensus 266 ~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~l~~~~~l~~~~~~~~~~~~~-----~~~ 336 (521)
T KOG0255|consen 266 RIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLF--T--EPKISFLDLFRTPRLRYRTLYLLFIWFV-----FSL 336 (521)
T ss_pred chHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhc--c--CCCCchhhhhcCHHHHHHHHHHHHHHHH-----HhH
Confidence 9999999888875433 11111111110101000000 0 0002356677776655555554444422 222
Q ss_pred HHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 008137 296 VMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVS 375 (576)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (576)
..+-.+......+. +. .......+.....+....+...|+.|||.....+.++..++++...+......
T Consensus 337 ~y~gl~~~~~~lg~-~~---~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~------- 405 (521)
T KOG0255|consen 337 VYYGLSLNVSGLGG-NI---YLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLG------- 405 (521)
T ss_pred HHHhhhhhhhhcCc-hH---HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccch-------
Confidence 22222333333333 22 22222333356777778889999999999999999999999888877643210
Q ss_pred ccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhH
Q 008137 376 QIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWL 455 (576)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 455 (576)
.+.
T Consensus 406 -----------------------------------------------------------------------------~~~ 408 (521)
T KOG0255|consen 406 -----------------------------------------------------------------------------GWL 408 (521)
T ss_pred -----------------------------------------------------------------------------hHH
Confidence 011
Q ss_pred HHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 008137 456 AVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLV 535 (576)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~ 535 (576)
..+...+..++.+.+.. ..+.+.+|++|+..|+.+.+..+....++++++|.+...... ......+.+++.++.+..+
T Consensus 409 ~~~~~~~~~~~~~~~~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 486 (521)
T KOG0255|consen 409 HWILPLLGKFFIGSAFN-LIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGL 486 (521)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHH
Confidence 22222222222222333 336888999999999999999999999999999988765444 3333444446777777777
Q ss_pred HHHhhccCCCCCCHHHHHHHHh
Q 008137 536 AIYLLVPETKGLAFEEVEKMLE 557 (576)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~ 557 (576)
+..+++|||+++.+.+..++.+
T Consensus 487 ~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 487 LSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHhcCcccCCCCCchhHHHHH
Confidence 7778899999998755444333
No 45
>PRK12382 putative transporter; Provisional
Probab=99.97 E-value=3.9e-29 Score=264.95 Aligned_cols=362 Identities=17% Similarity=0.155 Sum_probs=258.3
Q ss_pred HHHHHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008137 33 SAGIGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA 111 (576)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~ 111 (576)
.+.++.++.........+.+|. +.+++|.+..+. |++.+++.++..++++++|+++||+|||++++++.+...++.
T Consensus 19 ~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~---g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~ 95 (392)
T PRK12382 19 RIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMV---GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAG 95 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHH---HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence 3444556666677788888886 578999988888 999999999999999999999999999999999988877765
Q ss_pred HHHH---h-----cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008137 112 IIMA---I-----APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP 183 (576)
Q Consensus 112 ~~~~---~-----~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~ 183 (576)
+.+. + .++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++++++.+.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (392)
T PRK12382 96 LAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF 175 (392)
T ss_pred HHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5332 2 3578999999999999999999999999999999999999999999999999999999999988777
Q ss_pred chhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHH
Q 008137 184 GTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMIS 263 (576)
Q Consensus 184 ~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (576)
+ ||+.+.+..+..++.+......||.++. +++. .
T Consensus 176 g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------------------------------------------~ 209 (392)
T PRK12382 176 G-FAALALTTMVLPLLAWAFNGTVRKVPAH---AGER------------------------------------------P 209 (392)
T ss_pred C-hHHHHHHHHHHHHHHHHHHHhccCCCCC---cccC------------------------------------------c
Confidence 6 9998777655544433332223332210 0000 0
Q ss_pred HhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCCh
Q 008137 264 RLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRR 343 (576)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr 343 (576)
+.++.++ ..++..+. .+...........+.|.++++.+. + ..+.......++.+++.++.|++.||+++|
T Consensus 210 ~~~~~~~--~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~ 279 (392)
T PRK12382 210 SLWSVVG--LIWKPGLG-----LALQGVGFAVIGTFVSLYFASKGW-A--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGV 279 (392)
T ss_pred hHHHHHH--HHHHhHHH-----HHHHHHHHhHHHHHHHHHHHhcCC-c--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0000000 00111111 111122234455566777776654 2 233444556667788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCC
Q 008137 344 RLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPG 423 (576)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (576)
+.+..+..+..++.+++.....
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 301 (392)
T PRK12382 280 KVAIVSLLVETVGLLLLWLAPT---------------------------------------------------------- 301 (392)
T ss_pred eehHHHHHHHHHHHHHHHHccc----------------------------------------------------------
Confidence 9988877777766654433210
Q ss_pred cccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHH
Q 008137 424 ACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSN 503 (576)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~ 503 (576)
.+..+....+.+.+.+. ..+.......|.+|++.||++.|+.+....+|.
T Consensus 302 -----------------------------~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 351 (392)
T PRK12382 302 -----------------------------AWVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAY 351 (392)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 12223333333333332 233444566788899999999999999999999
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhc
Q 008137 504 LIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLV 541 (576)
Q Consensus 504 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 541 (576)
.++|.+.+.+.+..|++..|.+.+++.+++.+..++..
T Consensus 352 ~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 352 GVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999888888877765543
No 46
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.97 E-value=1e-28 Score=259.99 Aligned_cols=285 Identities=16% Similarity=0.182 Sum_probs=222.7
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 008137 31 ALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIG 110 (576)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~ 110 (576)
+..+++..++...+...+.+.+|.+.++++.++.+. +++.+++.++..+++++.|++.||+|||+++.++.++.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 83 (385)
T TIGR00710 7 ALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIV---QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS 83 (385)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence 334444456667788889999999999999998888 99999999999999999999999999999999999999999
Q ss_pred HHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 008137 111 AIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWML 190 (576)
Q Consensus 111 ~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f 190 (576)
.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~ 162 (385)
T TIGR00710 84 SLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIF 162 (385)
T ss_pred HHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887776 99999
Q ss_pred HHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhc
Q 008137 191 GVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAF 269 (576)
Q Consensus 191 ~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (576)
++.+++.++..+. ++..||+++...+ .+.++ ..+..++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------------------------------------~~~~~~~~~ 203 (385)
T TIGR00710 163 AFLSLAGILLSALIFFILPETLPYEAR-IQIST--------------------------------------YFETFLLLL 203 (385)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCccc-CCHHH--------------------------------------HHHHHHHHH
Confidence 9988877766555 4456665431100 00000 002233444
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHH
Q 008137 270 GNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVS 349 (576)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~ 349 (576)
+++..+.. ................+.|.++++..+.+..+.+.+.....++.+++.++.+++.||+++|+.+..+
T Consensus 204 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~ 278 (385)
T TIGR00710 204 KSKMFWGY-----ALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMG 278 (385)
T ss_pred cCchhHHH-----HHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 44443322 2222222333445566678777755445777788888888888999999999999999999998888
Q ss_pred HHHHHHHHHHHHHH
Q 008137 350 MFGLSSCLVALAVV 363 (576)
Q Consensus 350 ~~~~~~~~~~~~~~ 363 (576)
+.+..++.+++...
T Consensus 279 ~~~~~~~~~~~~~~ 292 (385)
T TIGR00710 279 LILFAVSAVLLEIT 292 (385)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766655543
No 47
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.97 E-value=4.9e-29 Score=259.73 Aligned_cols=355 Identities=13% Similarity=0.062 Sum_probs=264.3
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 008137 34 AGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAII 113 (576)
Q Consensus 34 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~ 113 (576)
+.++.++..+......+.+|.+..+++.+..+. +++.+++.++..+++++.|+++||+|||++++.+.++.+++.++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVL---SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAV 80 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHH
Confidence 345667778888888899999999999888877 99999999999999999999999999999999999999999988
Q ss_pred HHhcc-----hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 008137 114 MAIAP-----QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRW 188 (576)
Q Consensus 114 ~~~~~-----~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~ 188 (576)
.++++ +++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|.++++++++.+.+..+ ||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~ 159 (365)
T TIGR00900 81 LPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKW 159 (365)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHH
Confidence 88887 999999999999999999999999999999999999999999999999999999999999987766 999
Q ss_pred HHHHhHHHHHHHHHHHhhc--cCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhh
Q 008137 189 MLGVAGLPAVVQFGLMMML--PESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLK 266 (576)
Q Consensus 189 ~f~v~~~~~~~~~~~~~~l--~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (576)
.|++.++..++..+..+.+ ||+++. ++++.++ + .. ++..+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~-------------~~------------------~~~~~~~~ 204 (365)
T TIGR00900 160 AIWVDAVGFAISALLIVSVRIPELAAS--EIQALSN--A-------------VL------------------RDTREGIK 204 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCc--cccccch--h-------------HH------------------HHHHhHHH
Confidence 9999887766655544333 332210 0000000 0 00 00012233
Q ss_pred hhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHH
Q 008137 267 GAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLM 346 (576)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~ 346 (576)
..++++..+... ................+.|.+.++..+.+..+.+.......++.+++.++.+++.||++||+.+
T Consensus 205 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 280 (365)
T TIGR00900 205 FVLKNPLLRTLL----LLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALM 280 (365)
T ss_pred HHHcCcHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Confidence 444554433221 1111112222222336778888774444677778888888888999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccc
Q 008137 347 IVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACL 426 (576)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (576)
..+..+..++.+++.+...
T Consensus 281 ~~~~~~~~~~~~~~~~~~~------------------------------------------------------------- 299 (365)
T TIGR00900 281 TGAIFVIGLAILVVGLTPP------------------------------------------------------------- 299 (365)
T ss_pred HHHHHHHHHHHHHHHhhch-------------------------------------------------------------
Confidence 8776666665554443210
Q ss_pred ccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHH
Q 008137 427 IDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIV 506 (576)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~ 506 (576)
..+...+..++.+++.+ ...+....+..|..|++.||++.|+.+....++..++
T Consensus 300 -------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g 353 (365)
T TIGR00900 300 -------------------------NFPLFLVLWFAIGVGYG-PINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLG 353 (365)
T ss_pred -------------------------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 01333344444444443 2344566788899999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 008137 507 SLTFLTLTEALG 518 (576)
Q Consensus 507 ~~~~~~l~~~~g 518 (576)
|.+.|.+.|..|
T Consensus 354 ~~~~g~l~~~~g 365 (365)
T TIGR00900 354 LILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHcC
Confidence 999999998754
No 48
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.97 E-value=2.1e-28 Score=260.28 Aligned_cols=375 Identities=16% Similarity=0.092 Sum_probs=269.4
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhh--HHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 008137 33 SAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKT--WLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIG 110 (576)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~ 110 (576)
.+.++.++..+......+.+|.+.++++.+..+. .+.|++.+++.++..+++++.|+++||+|||+.+..+.++..++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 97 (408)
T PRK09874 18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV 97 (408)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence 3455667777888889999999999999876543 34589999999999999999999999999999999999999999
Q ss_pred HHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 008137 111 AIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWML 190 (576)
Q Consensus 111 ~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f 190 (576)
.++++++++++.+++.|++.|++.+ ..+....++.|++|+++|+++.++.+....+|.++++.+++.+.+..+ ||+.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~ 175 (408)
T PRK09874 98 MVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRPVF 175 (408)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHH
Confidence 9999999999999999999999865 567788899999999999999999999999999999999999887766 99999
Q ss_pred HHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhc
Q 008137 191 GVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAF 269 (576)
Q Consensus 191 ~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (576)
++.+++.++..+. ++.++|+++... +.+..+. ++..+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------------------------------------~~~~~~~ 215 (408)
T PRK09874 176 FITASVLFLCFLVTLFCIRENFQPVS-KKEMLHM---------------------------------------REVVTSL 215 (408)
T ss_pred HHHHHHHHHHHHHHHHHhccCccccc-chhhhHH---------------------------------------HHHHHhC
Confidence 9988877766555 445665432100 0000000 0111222
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchh---HHHHHHHHHhHHHHHHHHHHHHhhcccCChHHH
Q 008137 270 GNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKS---TALALSLVTSGLNALGSIVSMAFVDKYGRRRLM 346 (576)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~ 346 (576)
+++..... .................+.+.|..+.+..... ..+.+.....++.+++.+..|++.||++||+.+
T Consensus 216 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~ 291 (408)
T PRK09874 216 KNPKLVLS----LFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKIL 291 (408)
T ss_pred cCCchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence 33322211 11111111222233444556666655442222 234444556677788889999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccc
Q 008137 347 IVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACL 426 (576)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (576)
..+..+..++.+.+.....
T Consensus 292 ~~~~~~~~~~~~~~~~~~~------------------------------------------------------------- 310 (408)
T PRK09874 292 ITALIFSVLLLIPMSFVQT------------------------------------------------------------- 310 (408)
T ss_pred HHHHHHHHHHHHHHHHhcc-------------------------------------------------------------
Confidence 8877766555544332211
Q ss_pred ccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHH
Q 008137 427 IDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIV 506 (576)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~ 506 (576)
.+...+...+.+.+.+ ...+...+...+..|++.+|+.+++.+....+|..++
T Consensus 311 --------------------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~g 363 (408)
T PRK09874 311 --------------------------PLQLGILRFLLGAADG-ALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTG 363 (408)
T ss_pred --------------------------HHHHHHHHHHHHhhhH-hhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhh
Confidence 1232333333333332 2334444566777888999999999999999999999
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhc
Q 008137 507 SLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLV 541 (576)
Q Consensus 507 ~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 541 (576)
|.+.|.+.+..|++..|++.+++.+++.+..++..
T Consensus 364 p~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 364 PLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888877765544
No 49
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.97 E-value=1.6e-28 Score=259.44 Aligned_cols=360 Identities=15% Similarity=0.104 Sum_probs=262.7
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 008137 31 ALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIG 110 (576)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~ 110 (576)
+..+.++.++...+.....+.+|.+.+++|.+..+. |++.+.+.++..+++++.|+++||+|||+++.++.++.+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~---G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~ 84 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQV---GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAG 84 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778889999999999999999999988888 99999999999999999999999999999999999999999
Q ss_pred HHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 008137 111 AIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWML 190 (576)
Q Consensus 111 ~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f 190 (576)
.++++++++++.++++|+++|++.+...+.....+.+..++++|+++++.++.+.++|..+|+.+++.+.+... |+..+
T Consensus 85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~ 163 (381)
T PRK03633 85 CAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM-SVLPW 163 (381)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-chHHH
Confidence 99999999999999999999999999999888888999999999999999999999999999999999876532 32222
Q ss_pred HHhHHHHHHHHHHHh-hccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhc
Q 008137 191 GVAGLPAVVQFGLMM-MLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAF 269 (576)
Q Consensus 191 ~v~~~~~~~~~~~~~-~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (576)
..+......+...+ ..++++. +++ .. .+.++.+
T Consensus 164 -~~~~~~~~~~~~~~~~~~~~~~----~~~---------------------------------~~--------~~~~~~~ 197 (381)
T PRK03633 164 -VTGLVLAAILPLLFTRILNQQA----ENH---------------------------------DS--------TSIWPML 197 (381)
T ss_pred -HHHHHHHHHHHHHHhcccCCCC----CCC---------------------------------CC--------CCHHHHH
Confidence 22222221111111 1222100 000 00 1112233
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHH
Q 008137 270 GNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVS 349 (576)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~ 349 (576)
+++..+. .....+...........+.|.|+++.+. +....+.+.....++.+++.+..|++.||+++|+.+..+
T Consensus 198 ~~~~~~~-----~~~~~~~~~~~~~~~~~~lp~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~ 271 (381)
T PRK03633 198 KLRQARL-----GVNGCIISGIVLGSLYGLMPLYLNHQGM-SDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQ 271 (381)
T ss_pred HhcchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHH
Confidence 3433221 1111222222334455678888887765 566667777788888899999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccc
Q 008137 350 MFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDE 429 (576)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (576)
..+..++.+++. . .
T Consensus 272 ~~~~~~~~~~~~-~-~---------------------------------------------------------------- 285 (381)
T PRK03633 272 VFVVILGSIAML-S-Q---------------------------------------------------------------- 285 (381)
T ss_pred HHHHHHHHHHHh-h-h----------------------------------------------------------------
Confidence 777666554432 1 1
Q ss_pred cccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHH
Q 008137 430 KSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLT 509 (576)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~ 509 (576)
+.......+.+.+. ....|.......|..|++.++...+..+....+|..++|.+
T Consensus 286 ------------------------~~~~~~~~l~g~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~ 340 (381)
T PRK03633 286 ------------------------AAMAPALFILGAAG-FTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSF 340 (381)
T ss_pred ------------------------HHHHHHHHHHHHHH-HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111122222222 23345566677788888887888888888889999999999
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHH
Q 008137 510 FLTLTEALGSAGTFLLFAGFSLLGLVAI 537 (576)
Q Consensus 510 ~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 537 (576)
.|.+.|..|+...|.+.+.+.++..+..
T Consensus 341 ~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 341 TAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 9999999999888888877777665443
No 50
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.97 E-value=3.9e-28 Score=257.31 Aligned_cols=281 Identities=18% Similarity=0.174 Sum_probs=213.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 008137 34 AGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAII 113 (576)
Q Consensus 34 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~ 113 (576)
..+..+..........+.+|.+.++++.+..+. ++..+.+.++..+++++.|+++||+|||+.++++.+++.++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 8 SFALVLLYPAGIDMYLVGLPRIAADLNASEAQL---HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 334445566666677788999999999988888 99999999999999999999999999999999999999999999
Q ss_pred HHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHh
Q 008137 114 MAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVA 193 (576)
Q Consensus 114 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~ 193 (576)
+.++++++.+++.|+++|++.+...+....++.|++|+++|+++.++.+....+|..++|.+++.+.+..+ ||+.|++.
T Consensus 85 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~~~ 163 (392)
T PRK10473 85 CSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFYTM 163 (392)
T ss_pred HHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877666 99999998
Q ss_pred HHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccc
Q 008137 194 GLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNK 272 (576)
Q Consensus 194 ~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (576)
+++.++..+. .+.+||+++.. +++.+.. .+..++.++++
T Consensus 164 ~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~--------------------------------------~~~~~~~~~~~ 203 (392)
T PRK10473 164 AAMGILVLLLSLFILKETRPAR--APAASSK--------------------------------------PRENSESLLNR 203 (392)
T ss_pred HHHHHHHHHHHHHHcCCCCCcc--cCCccch--------------------------------------HHHHHHHHhCH
Confidence 8877766554 45567764211 0000000 01112233343
Q ss_pred hhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHH
Q 008137 273 IVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFG 352 (576)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~ 352 (576)
..+....... ...........+.|.++++..+.+....+.+.....++.+++.++.+++.||+|||+.+..++.+
T Consensus 204 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~ 278 (392)
T PRK10473 204 FFLSRLVITT-----LSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVL 278 (392)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3332222111 11112233444556666554344666777777788888999999999999999999999888877
Q ss_pred HHHHHHHHHHH
Q 008137 353 LSSCLVALAVV 363 (576)
Q Consensus 353 ~~~~~~~~~~~ 363 (576)
..++.+++...
T Consensus 279 ~~~~~~~~~~~ 289 (392)
T PRK10473 279 FLAAGITLALS 289 (392)
T ss_pred HHHHHHHHHHH
Confidence 77766655544
No 51
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.97 E-value=4.1e-30 Score=269.07 Aligned_cols=375 Identities=18% Similarity=0.177 Sum_probs=259.9
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 008137 37 GGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAI 116 (576)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 116 (576)
+.+..++++..++...|.+.++++.+..+. +++.+++.++..+++++.|+++||+|||++++++.++.+++.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 79 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDL---GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF 79 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHHhCCCHhHH---HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999998888 99999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHH-HHHHHhcCCCchhHHHHHHhHH
Q 008137 117 APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAY-LINLAFTKAPGTWRWMLGVAGL 195 (576)
Q Consensus 117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~-~l~~~l~~~~~~Wr~~f~v~~~ 195 (576)
+++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .+++.+.+..+ ||+.|++.++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 158 (379)
T TIGR00881 80 STSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGI 158 (379)
T ss_pred hhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 46666666655 9999999888
Q ss_pred HHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchh
Q 008137 196 PAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIV 274 (576)
Q Consensus 196 ~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (576)
+.++..+. +++.+|+|+....+.+.++.. ++.+. ..+..++ .........+..++++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~---------~~~~~~~--~~~~~~~~~~~~~~~~~~ 218 (379)
T TIGR00881 159 IAIIVSLICFLLLRDSPQSCGLPPAEEMPN---------EEPDG---------DAEKKEE--ELTKKQIFLQYVLLNKVL 218 (379)
T ss_pred HHHHHHHHHheeeCCCccccccCccccCcc---------ccccc---------ccccccc--cccchHHHHHHHHhcchH
Confidence 77665444 555677654211111000000 00000 0000000 000000223334444432
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHH
Q 008137 275 RRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLS 354 (576)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~ 354 (576)
+......+...........+.|.++++..+.+..+.+.......++.+++.++.+++.||..+|+..........
T Consensus 219 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~ 293 (379)
T TIGR00881 219 -----WYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMA 293 (379)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 223333333444455667778888876544477778888888888999999999999998643322222112111
Q ss_pred HHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccc
Q 008137 355 SCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDT 434 (576)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (576)
.....+......
T Consensus 294 ~~~~~~~~~~~~-------------------------------------------------------------------- 305 (379)
T TIGR00881 294 LIIVSLLVYWLN-------------------------------------------------------------------- 305 (379)
T ss_pred HHHHHHHHHhcC--------------------------------------------------------------------
Confidence 111111111000
Q ss_pred ccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 008137 435 LCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLT 514 (576)
Q Consensus 435 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~ 514 (576)
+....+...+.....+. +..+..+....+..|.+|++.||++.|+.+....+|+.++|.+.|.+.
T Consensus 306 --------------~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 370 (379)
T TIGR00881 306 --------------PAANPLMDLICLFALGF-LVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLA 370 (379)
T ss_pred --------------cchhHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence 00001222222222222 222333344567789999999999999999999999999999999999
Q ss_pred Hhhccchhh
Q 008137 515 EALGSAGTF 523 (576)
Q Consensus 515 ~~~g~~~~~ 523 (576)
+..|++..|
T Consensus 371 ~~~g~~~~f 379 (379)
T TIGR00881 371 DGFGWAGAF 379 (379)
T ss_pred HhhcccccC
Confidence 999887543
No 52
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.97 E-value=6.5e-28 Score=256.49 Aligned_cols=392 Identities=13% Similarity=0.064 Sum_probs=275.9
Q ss_pred cchHHHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-hhccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008137 11 KTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKE-DFRDVEKKTWLQELIVSMAVAGAIFGAGFGGW 89 (576)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~ 89 (576)
++|+++-|+.. .++--++.+.+..++.++.......++++.+.+.+ +++.+..+. +++.+++.+++.++.++.|+
T Consensus 17 ~pe~~~~w~~~-~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~---g~l~ai~~l~~al~rip~G~ 92 (462)
T PRK15034 17 KPENPAFWENK-GKHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQL---FLLTALPSVSGALLRVPYSF 92 (462)
T ss_pred CCCChHHHhhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34555555443 22233456677777888888899999999999876 899999998 99999999999999999999
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHH
Q 008137 90 INDRFGRKISLLGADVLFFIGAIIMAIA-----PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFL 164 (576)
Q Consensus 90 l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~ 164 (576)
+.||+|.|+++.++.+++++.+++++++ ++++.+++.|++.|++ |..++.....+++|+|+++||+++|++...
T Consensus 93 l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~ 171 (462)
T PRK15034 93 MVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGL 171 (462)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHH
Confidence 9999999999999999999999999987 8999999999999998 778999999999999999999999999666
Q ss_pred HHHHHHHHHHHHHHhc-----CC------------CchhHHHHHHhHHHHHHHHHHH-hhccCChhHHhhcCCHHHHHHH
Q 008137 165 ITGGQFLAYLINLAFT-----KA------------PGTWRWMLGVAGLPAVVQFGLM-MMLPESPRWLYRQNKVDEARAI 226 (576)
Q Consensus 165 ~~~G~~l~~~l~~~l~-----~~------------~~~Wr~~f~v~~~~~~~~~~~~-~~l~esp~~l~~~~~~~~~~~~ 226 (576)
.++|..+++++...+. .. ..+||..+++.+++.++..++. ++.++.|. .+.+
T Consensus 172 G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~------- 241 (462)
T PRK15034 172 GNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRAS------- 241 (462)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccC-------
Confidence 6666655444443221 10 1138888888887776665554 34444321 0000
Q ss_pred HHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHh
Q 008137 227 LEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQF 306 (576)
Q Consensus 227 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (576)
.++..+.+|++..| .+.+.++..+.++..+.++.|.|.++
T Consensus 242 -----------------------------------~~~~~~vlk~~~~W-----llslly~~tFG~fvg~s~~lp~~~~~ 281 (462)
T PRK15034 242 -----------------------------------IADQLPVLQRLHLW-----LLSLLYLATFGSFIGFSAGFAMLAKT 281 (462)
T ss_pred -----------------------------------HHHHHHHhCCCchh-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 02233455555433 34444455666677788888998876
Q ss_pred hcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCC
Q 008137 307 AGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNN 386 (576)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (576)
.. +............+...+.++++|+++||+|+++++.++++.+.++...+.......
T Consensus 282 ~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~------------------- 340 (462)
T PRK15034 282 QF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGT------------------- 340 (462)
T ss_pred Hc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccc-------------------
Confidence 43 222333333444566788899999999999999999988887777665433332100
Q ss_pred CCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHH
Q 008137 387 TCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIIT 466 (576)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 466 (576)
+...-+...+.+......
T Consensus 341 --------------------------------------------------------------~~~~~~~~~~~~~~l~~~ 358 (462)
T PRK15034 341 --------------------------------------------------------------GSGNFIAFYAVFMGLFLT 358 (462)
T ss_pred --------------------------------------------------------------cccHHHHHHHHHHHHHHH
Confidence 000112223333333344
Q ss_pred hcCCcccccchhccccccc---------------------cccccchhHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhH
Q 008137 467 YSPGMGTAPWIVNSEIYPL---------------------RYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGS-AGTFL 524 (576)
Q Consensus 467 ~~~~~~~~~~~~~~e~~p~---------------------~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~-~~~~~ 524 (576)
.+++.+. .+-++.+.+|. +..|.+.|+....+.+|+++.|.+++...+..|. ...|+
T Consensus 359 ~G~gngs-vfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~ 437 (462)
T PRK15034 359 AGLGSGS-TFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMK 437 (462)
T ss_pred hcccchH-HHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHH
Confidence 4444333 33455666663 2567889999999999999999999999888764 45678
Q ss_pred HHHHHHHHHHHHHHhhc
Q 008137 525 LFAGFSLLGLVAIYLLV 541 (576)
Q Consensus 525 ~~~~~~~i~~~~~~~~~ 541 (576)
.+.+..+++.++.|...
T Consensus 438 ~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 438 VFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888888888777654
No 53
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.97 E-value=2e-28 Score=253.06 Aligned_cols=346 Identities=26% Similarity=0.337 Sum_probs=289.1
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008137 33 SAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAI 112 (576)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~ 112 (576)
.+.++.+...++.....+..|.+.++++.+..+. +++.+...++..+++++.|+++||+|||+.+.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~ 79 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA---GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSL 79 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence 3456677788899999999999999999888887 9999999999999999999999999999999999999999999
Q ss_pred HHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 008137 113 IMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGV 192 (576)
Q Consensus 113 ~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v 192 (576)
+..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~ 158 (352)
T cd06174 80 LLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLI 158 (352)
T ss_pred HHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988776 9999999
Q ss_pred hHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccc
Q 008137 193 AGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNK 272 (576)
Q Consensus 193 ~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (576)
.+++.++..+...+++ |
T Consensus 159 ~~~~~~~~~~~~~~~~--~------------------------------------------------------------- 175 (352)
T cd06174 159 LAILGLLLALLLLFLL--R------------------------------------------------------------- 175 (352)
T ss_pred HHHHHHHHHHHHHHHH--H-------------------------------------------------------------
Confidence 8888777666654433 0
Q ss_pred hhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChH-HHHHHHH
Q 008137 273 IVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRR-LMIVSMF 351 (576)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~-~~~~~~~ 351 (576)
.++......+...........+.|.+.++..+.+..+.+.......++.+++.++.+++.||++||+ .+..+..
T Consensus 176 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 250 (352)
T cd06174 176 -----LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLL 250 (352)
T ss_pred -----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 0222333333444456677778888887764447788888888999999999999999999999999 8888888
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccc
Q 008137 352 GLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKS 431 (576)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (576)
+..++.+.+.....
T Consensus 251 ~~~i~~~~~~~~~~------------------------------------------------------------------ 264 (352)
T cd06174 251 LAALGLLLLALAPS------------------------------------------------------------------ 264 (352)
T ss_pred HHHHHHHHHHHhcc------------------------------------------------------------------
Confidence 87777776654321
Q ss_pred cccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHH
Q 008137 432 TDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFL 511 (576)
Q Consensus 432 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~ 511 (576)
.+.......+...+.+ ...+....+..|..|++.|++.+|+.+....++..+++.+.+
T Consensus 265 ---------------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g 322 (352)
T cd06174 265 ---------------------LALLLVALLLLGFGLG-FAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAG 322 (352)
T ss_pred ---------------------HHHHHHHHHHHHHHHh-ccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1333344444444443 345666788899999999999999999999999999999999
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHH
Q 008137 512 TLTEALGSAGTFLLFAGFSLLGLVAIY 538 (576)
Q Consensus 512 ~l~~~~g~~~~~~~~~~~~~i~~~~~~ 538 (576)
.+.+..+++..+++.+++.+++.+..+
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 323 LLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 999999999999999998888777654
No 54
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.97 E-value=1.5e-27 Score=254.73 Aligned_cols=271 Identities=14% Similarity=0.199 Sum_probs=211.5
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 008137 29 KLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFF 108 (576)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~ 108 (576)
.....+.+..++..++...+.+.+|.+.++++.+.... ++..+++.+++.++++++|+++||+|||++++.+.++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~ 92 (413)
T PRK15403 16 FFPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLA---PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFT 92 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHH
Confidence 34445566677788899999999999999999988888 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 008137 109 IGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRW 188 (576)
Q Consensus 109 i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~ 188 (576)
+++++++++++++.++++|+++|++.+...+....++.|++|+++|+++++++.....+|..+||++++.+.+..+ ||+
T Consensus 93 ~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~ 171 (413)
T PRK15403 93 LACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKV 171 (413)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHH
Confidence 9999999999999999999999999987777788889999999999999999999999999999999998887766 999
Q ss_pred HHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhh
Q 008137 189 MLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKG 267 (576)
Q Consensus 189 ~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (576)
.|++.+++.++.++. ++.+||+++.. +++.+. ++..++++.
T Consensus 172 ~f~~~~~~~~i~~~~~~~~lp~~~~~~--~~~~~~------------------------------------~~~~~~~~~ 213 (413)
T PRK15403 172 LFAIIAVMGLIAFVGLLLAMPETVKRG--AVPFSA------------------------------------KSVLRDFRN 213 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccc--CCCCCh------------------------------------HHHHHHHHH
Confidence 999998887776655 45578864310 000000 000133445
Q ss_pred hcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHH
Q 008137 268 AFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLM 346 (576)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~ 346 (576)
.++++.++. ........+.....+..+.|.++++..+.+....++......++.+++..+.+.+.++..+++..
T Consensus 214 ll~~~~~~~-----~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 287 (413)
T PRK15403 214 VFRNRLFLT-----GAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFI 287 (413)
T ss_pred HHcCHHHHH-----HHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHH
Confidence 556654443 22223334444556666789888887655777888877777777788877787776554444443
No 55
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.97 E-value=2.2e-28 Score=257.27 Aligned_cols=362 Identities=19% Similarity=0.176 Sum_probs=249.4
Q ss_pred HhhhhhhhhHHHHHHHHHHhhcc--chhhhHHHHHHHH-----HHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008137 39 LLFGYDTGVISGALLYIKEDFRD--VEKKTWLQELIVS-----MAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA 111 (576)
Q Consensus 39 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~g~i~s-----~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~ 111 (576)
+++++|+..++...+.+.+++.. ++.+. +.+.+ ...++..+++++.|+++||+|||+++.++.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 79 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLV---ALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGT 79 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHH---HHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 56788999999999998888764 22222 33333 3444556789999999999999999999999999999
Q ss_pred HHHHhcchHH--------HHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC--
Q 008137 112 IIMAIAPQPW--------VIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTK-- 181 (576)
Q Consensus 112 ~~~~~~~~~~--------~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~-- 181 (576)
+++++++++. .+++.|+++|++.+...+....++.|++|+++|+++.++.+.+..+|.+++++++..+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~ 159 (394)
T TIGR00883 80 LLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLL 159 (394)
T ss_pred HHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999875 488999999999999999999999999999999999999999999999999988776532
Q ss_pred ------CCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhc
Q 008137 182 ------APGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEG 255 (576)
Q Consensus 182 ------~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (576)
.. +||+.|++.+++.++.......++|++++..++++.++ ..
T Consensus 160 ~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~- 207 (394)
T TIGR00883 160 GDDALLEW-GWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKK------------------------------KR- 207 (394)
T ss_pred CHHHhhcc-chHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhcccc------------------------------cc-
Confidence 33 49999999887776666556667777643211100000 00
Q ss_pred ccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHH
Q 008137 256 LIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMA 335 (576)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~ 335 (576)
.+.++.++++. +. +.......+...........+.|.++++..+.+....+.......++.+++.++.|+
T Consensus 208 -------~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (394)
T TIGR00883 208 -------GPIRETLTKHR--KP-FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGA 277 (394)
T ss_pred -------CCHHHHHHhch--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222221 11 222222233334445566677888886554446677777777888889999999999
Q ss_pred hhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCC
Q 008137 336 FVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAH 415 (576)
Q Consensus 336 l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (576)
++||+|||+.+.....+..+..+.+.......
T Consensus 278 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 309 (394)
T TIGR00883 278 LSDRIGRRPVLIIFTVLAALLAVPLLMALLDS------------------------------------------------ 309 (394)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHhcC------------------------------------------------
Confidence 99999999987655444433332221111100
Q ss_pred CCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHH
Q 008137 416 KGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIA 495 (576)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~ 495 (576)
...+.......+...+.+ ...+....+..|.+|++.|+++.|+.
T Consensus 310 -----------------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~ 353 (394)
T TIGR00883 310 -----------------------------------GSFTLFFFLVLGLALIGG-MYTGPMGSFLPELFPTEVRYTGASLA 353 (394)
T ss_pred -----------------------------------CchHHHHHHHHHHHHHHH-HHhhhHHHHHHHhCCccceeeEeeeh
Confidence 001232333333333333 23345567889999999999999985
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHH
Q 008137 496 -AVSNWTSNLIVSLTFLTLTEALG-SAGTFLLFAGF 529 (576)
Q Consensus 496 -~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~ 529 (576)
+..+.+|..++|.+.|.+.+..| ++..++.....
T Consensus 354 ~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 354 YNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred hHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 45567888899999999999988 55444444433
No 56
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.97 E-value=1.3e-27 Score=254.48 Aligned_cols=375 Identities=14% Similarity=0.059 Sum_probs=255.2
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 008137 34 AGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAII 113 (576)
Q Consensus 34 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~ 113 (576)
..++.++.........+.++.+.++++.+..+. +++.+.+.++..+++++.|++.||+|||+++..+.+++++++++
T Consensus 18 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~ 94 (402)
T TIGR00897 18 GYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQS---ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAA 94 (402)
T ss_pred HHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHh---HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 334444444444444556677778999988888 99999999999999999999999999999999999999988775
Q ss_pred HH---h-cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHH-HHHHHHHHHhcCCCchhHH
Q 008137 114 MA---I-APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQ-FLAYLINLAFTKAPGTWRW 188 (576)
Q Consensus 114 ~~---~-~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~-~l~~~l~~~l~~~~~~Wr~ 188 (576)
+. + .++++.+++.|+++|++.+...+.....+.+++|+++|++++|+.+.+.++|. .+++++++.+.+..+ |+.
T Consensus 95 ~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g-~~~ 173 (402)
T TIGR00897 95 FIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG-EMN 173 (402)
T ss_pred HHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hHH
Confidence 53 3 35788899999999999998888888899999999999999999999999997 689999988887665 766
Q ss_pred HHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhh
Q 008137 189 MLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKG 267 (576)
Q Consensus 189 ~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (576)
.++......++..+. .++.++.++.. .++++++ . .+..+..+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------------~------------------~~~~~~~~~ 217 (402)
T TIGR00897 174 TLWSALAFVLTGGVIALFSNKDIFTPQ-HMQTREK-----------------F------------------SELGKAATI 217 (402)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcc-cccCCcc-----------------h------------------hhHHHHHHH
Confidence 655544433333333 33344332100 0000000 0 000022334
Q ss_pred hcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHH
Q 008137 268 AFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMI 347 (576)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~ 347 (576)
.++++..+. .....+.+.........+.|.++++.+. +..+.+.+.....++++++.++.|+++||++||+.+.
T Consensus 218 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~ 291 (402)
T TIGR00897 218 LFTNPNVLL-----GGMVRIINTIGLFGFAVFLPMFVAELGF-STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR 291 (402)
T ss_pred HHcChhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 445543322 2222333444556677788999988766 5556666667778889999999999999999888764
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccc
Q 008137 348 -VSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACL 426 (576)
Q Consensus 348 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (576)
.+.+...++.+.+........
T Consensus 292 ~~~~l~~~~~~~~l~~~~~~~~---------------------------------------------------------- 313 (402)
T TIGR00897 292 WFGGVGCGIFTLALYYIPQHFG---------------------------------------------------------- 313 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHccC----------------------------------------------------------
Confidence 233333333222222111000
Q ss_pred ccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHH
Q 008137 427 IDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIV 506 (576)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~ 506 (576)
+..+...+...+.+.+.. +..+.. ....|..| +.||++.|+.+....+++.++
T Consensus 314 ------------------------~~~~~~~~~~~~~G~~~~-~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~g 366 (402)
T TIGR00897 314 ------------------------HSFAVALIIAIALGIFLA-GYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLA 366 (402)
T ss_pred ------------------------CcHHHHHHHHHHHHHHHH-HHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHH
Confidence 001222233333333332 223332 44567654 689999999999999999999
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHh
Q 008137 507 SLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYL 539 (576)
Q Consensus 507 ~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 539 (576)
|.+.+.+.+..|+...+++.+++.+++.+...+
T Consensus 367 p~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 367 PAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887766654
No 57
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.97 E-value=9e-28 Score=252.11 Aligned_cols=363 Identities=14% Similarity=0.096 Sum_probs=257.7
Q ss_pred HHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHH-HHHHHHHHHHHH
Q 008137 36 IGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLL-GADVLFFIGAII 113 (576)
Q Consensus 36 l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~-~~~~~~~i~~~~ 113 (576)
+..++.++......+.+|. +.+++|.+..+. |++.+++.+...+.+++.|+++||+|||+.++ .+.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~ 80 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMI---GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLL 80 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHH
Confidence 3456777888888898887 467899988888 99999999999999999999999999988755 456666778888
Q ss_pred HHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHH--HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 008137 114 MAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGAL--VSANGFLITGGQFLAYLINLAFTKAPGTWRWMLG 191 (576)
Q Consensus 114 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~--~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~ 191 (576)
++++++++.+++.|+++|.+.+...|...++..|+.|+++|++. .+....+.++|..+++++++.+.+..+ ||+.|+
T Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~ 159 (375)
T TIGR00899 81 FAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFL 159 (375)
T ss_pred HHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHH
Confidence 99999999999999999988888888888999999887777654 578888889999999999999988776 999999
Q ss_pred HhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcc
Q 008137 192 VAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFG 270 (576)
Q Consensus 192 v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (576)
+.+++.++..+. ++++||.|++...+.+ + .+.++.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--------------------------------------~~~~~~~~ 197 (375)
T TIGR00899 160 TAALAFVLCGVLVWLFLPSYPRGAPGALT----R--------------------------------------LEVRGLLA 197 (375)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCcccccC----c--------------------------------------chhhhhhc
Confidence 998887766555 4557886642110000 0 00111222
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHH
Q 008137 271 NKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSM 350 (576)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~ 350 (576)
++..+.. ....+..+........+.|.++++..+.+....+.......+..+++.++.|++.||++||+.+..+.
T Consensus 198 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~ 272 (375)
T TIGR00899 198 SRDTRLL-----FVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAA 272 (375)
T ss_pred CcchHHH-----HHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHH
Confidence 3322221 11111122223334455677765544446666666666666667788899999999999999887766
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccc
Q 008137 351 FGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEK 430 (576)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (576)
++..++...+.....
T Consensus 273 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 287 (375)
T TIGR00899 273 LAGVAFYTGLAADNS----------------------------------------------------------------- 287 (375)
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 654444333222111
Q ss_pred ccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHH
Q 008137 431 STDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTF 510 (576)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~ 510 (576)
.+..+....+.+.+.+. ..+....+..|..|+ .++++.|+.+...++|..++|.+.
T Consensus 288 ----------------------~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~ 343 (375)
T TIGR00899 288 ----------------------LWALLMLQLLNAIFIGI-LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVG 343 (375)
T ss_pred ----------------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222232333221 234445677788876 467999999999999999999999
Q ss_pred HHHHHhhccchhhHHHHHHHHHHHHHHH
Q 008137 511 LTLTEALGSAGTFLLFAGFSLLGLVAIY 538 (576)
Q Consensus 511 ~~l~~~~g~~~~~~~~~~~~~i~~~~~~ 538 (576)
|.+.+..|++..|++.+++.+++.+...
T Consensus 344 g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 344 GILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 9999999999888888888777776653
No 58
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.97 E-value=1.3e-28 Score=255.56 Aligned_cols=348 Identities=22% Similarity=0.335 Sum_probs=256.1
Q ss_pred HHHHHhhhhhhhhHHHHHH-HHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 008137 35 GIGGLLFGYDTGVISGALL-YIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAII 113 (576)
Q Consensus 35 ~l~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~ 113 (576)
+++.++..++...+.+.+| .+.+++|.+..+. +++.+++.++..+++++.|+++||+|||+++.++.++.+++.++
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~ 78 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQI---GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLL 78 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCH---HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHH
Confidence 4667788888899999999 8999999999998 99999999999999999999999999999999999999999777
Q ss_pred HHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHh
Q 008137 114 MAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVA 193 (576)
Q Consensus 114 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~ 193 (576)
..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|.++++.+++.+.+..+ ||+.|++.
T Consensus 79 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~ 157 (352)
T PF07690_consen 79 LAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLIS 157 (352)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHH
T ss_pred hhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-cccccccc
Confidence 77778888999999999999999999999999999999999999999999999999999999999987666 99999999
Q ss_pred HHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccc
Q 008137 194 GLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNK 272 (576)
Q Consensus 194 ~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (576)
+++.++..++ .++++++++....+.+.++.+ +..++ ..+.++...+++
T Consensus 158 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~-----~~~~~~~~~~~~ 206 (352)
T PF07690_consen 158 AILSLIAAILFILFLPEPPPPRERESPKESES--------------------------KKPKP-----LKPGFKSLFKNP 206 (352)
T ss_dssp HHHHHHHHHHHHCCC---STTTT--SSTTTT----------------------------HHHC-----CCH-CTHHHHHH
T ss_pred cchhhhhhhhHhhhhhhccccccccccccccc--------------------------ccccc-----cccccccccccc
Confidence 9998887765 344554443221111111000 00000 001123333333
Q ss_pred hhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCc-hhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHH
Q 008137 273 IVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFAS-KSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMF 351 (576)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~ 351 (576)
..+ ......+...........+.|.|+++..+.+ ....+.......+..+++.++.+++.||+++|+.......
T Consensus 207 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (352)
T PF07690_consen 207 VLW-----ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAIL 281 (352)
T ss_dssp CCH-----HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhh-----hhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 332 2222233333345567788888844443335 5777777788888889999999999999999887777666
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccc
Q 008137 352 GLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKS 431 (576)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (576)
...++.+.+.......
T Consensus 282 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 297 (352)
T PF07690_consen 282 LLILGALGLLLLPFSS---------------------------------------------------------------- 297 (352)
T ss_dssp HHHHHHHHHCCSHHHC----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhh----------------------------------------------------------------
Confidence 6666655554433210
Q ss_pred cccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHH
Q 008137 432 TDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVS 507 (576)
Q Consensus 432 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~ 507 (576)
..+.......+.+.+.+ ...+....+..|..|++.||++.|+.+....+++.++|
T Consensus 298 --------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 298 --------------------SPVWLIIALFLIGFGFG-IVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp --------------------HHHHHHHHHHHHHHHHH-HHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 01222333333334333 23456668889999999999999999999999999887
No 59
>PRK11043 putative transporter; Provisional
Probab=99.97 E-value=6.7e-27 Score=248.61 Aligned_cols=351 Identities=16% Similarity=0.108 Sum_probs=254.0
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008137 33 SAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAI 112 (576)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~ 112 (576)
.+.+...+..+....+.|.+|.+.++++.++.+. +++.+++.++..++++++|+++||+|||+.+..+.++..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 86 (401)
T PRK11043 10 YLAGLSMLGFLATDMYLPAFKAIQADLQTSASAV---SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSL 86 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHH
Confidence 3333345556677888899999999999998888 9999999999999999999999999999999999999999999
Q ss_pred HHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 008137 113 IMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGV 192 (576)
Q Consensus 113 ~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v 192 (576)
+++++++++.+++.|+++|++.+...+...+++.|++|+++|++..+.......+|..++|.+++.+.+..+ ||+.|++
T Consensus 87 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~~ 165 (401)
T PRK11043 87 GMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFAT 165 (401)
T ss_pred HHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHH
Confidence 999999999999999999999998888888999999999999999999999999999999999999988776 9999999
Q ss_pred hHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccc
Q 008137 193 AGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNK 272 (576)
Q Consensus 193 ~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (576)
.+++.++..+..++++|+++. + +.++. ..++++.++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~---~-~~~~~--------------------------------------~~~~~~~~~~~ 203 (401)
T PRK11043 166 LFAITLLLILPTLRLKPSKKA---R-KQSQD--------------------------------------ALTFKQLLKSK 203 (401)
T ss_pred HHHHHHHHHHHHHHcCCCCCc---c-ccchH--------------------------------------HHHHHHHHcCh
Confidence 888887776666566655321 0 00000 02233444444
Q ss_pred hhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHH
Q 008137 273 IVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFG 352 (576)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~ 352 (576)
..+...+.. ............+.|.++++.+. +....+.......++.+++.++.+++.||+++|+........
T Consensus 204 ~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~ 277 (401)
T PRK11043 204 TYLGNVLIF-----AACSAAFFAWLTGSPFILEQMGY-SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVL 277 (401)
T ss_pred hHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 333222111 11122234455667888887666 666677766677777888999999999999998877665555
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccc
Q 008137 353 LSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKST 432 (576)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (576)
..++.+.+........
T Consensus 278 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 293 (401)
T PRK11043 278 FAVSVIAIWLASLLSH---------------------------------------------------------------- 293 (401)
T ss_pred HHHHHHHHHHHHHhcc----------------------------------------------------------------
Confidence 5555443332211000
Q ss_pred ccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 008137 433 DTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLT 512 (576)
Q Consensus 433 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~ 512 (576)
+..+..+....+...+.+ ...+.......|..| +.+|++.|+.+..+..++..++.+.+.
T Consensus 294 ------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~ 353 (401)
T PRK11043 294 ------------------PSLVPLLIPFCVMAAANG-AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSA 353 (401)
T ss_pred ------------------CcHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001222222333333333 233444445556665 579999999999999899999999998
Q ss_pred HHHhhcc
Q 008137 513 LTEALGS 519 (576)
Q Consensus 513 l~~~~g~ 519 (576)
+.+....
T Consensus 354 l~~~~~~ 360 (401)
T PRK11043 354 LISTPLL 360 (401)
T ss_pred ccCCChh
Confidence 8775433
No 60
>PRK10133 L-fucose transporter; Provisional
Probab=99.97 E-value=3.4e-27 Score=253.81 Aligned_cols=373 Identities=11% Similarity=0.021 Sum_probs=259.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 008137 26 YIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADV 105 (576)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~ 105 (576)
.....+..+++..++.++++...++..|.++++++.++.+. |++.+.+.+++.+++++.|++.||+|||+++..+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~---gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~ 99 (438)
T PRK10133 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA---GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF 99 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 34455566667778889999999999999999999998888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHH---HhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 008137 106 LFFIGAIIM---AIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTK- 181 (576)
Q Consensus 106 ~~~i~~~~~---~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~- 181 (576)
+++++++++ +++++++.++++|+++|+|.|...+...+++.|+.|+++|.+.++..+....+|..+++.++..+..
T Consensus 100 ~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~ 179 (438)
T PRK10133 100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS 179 (438)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999875 5689999999999999999999999999999998888777778999999999999999998875431
Q ss_pred C-----------------C-------chhHHHHHHhHH-HHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchh
Q 008137 182 A-----------------P-------GTWRWMLGVAGL-PAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQ 235 (576)
Q Consensus 182 ~-----------------~-------~~Wr~~f~v~~~-~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~ 235 (576)
. . .+||++|+.... ..++.++. ...+||.+.. + +.++..
T Consensus 180 ~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~---~-~~~~~~----------- 244 (438)
T PRK10133 180 NVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---N-HSDAKQ----------- 244 (438)
T ss_pred CCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---c-cccccc-----------
Confidence 0 0 136777765333 33332222 2234542210 0 000000
Q ss_pred hhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHH-HHhhcCCchhH
Q 008137 236 VEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTI-VQFAGFASKST 314 (576)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 314 (576)
.+..++.+++++++.++...+.. +...........|.+.+ +++..+.+...
T Consensus 245 -----------------------~~~~~~~~~ll~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ 296 (438)
T PRK10133 245 -----------------------GSFSASLSRLARIRHWRWAVLAQ-----FCYVGAQTACWSYLIRYAVEEIPGMTAGF 296 (438)
T ss_pred -----------------------cchhhhHHHHHhCchHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhcCCCCHHH
Confidence 00012234555555544322111 11222233344455656 45555558888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCccccc
Q 008137 315 ALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITD 394 (576)
Q Consensus 315 ~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (576)
++.......++.++|+++++++.||+++|+++..+.++..+.+.+.....
T Consensus 297 ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~------------------------------ 346 (438)
T PRK10133 297 AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG------------------------------ 346 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC------------------------------
Confidence 88888999999999999999999999999988877666554443322210
Q ss_pred CCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccc
Q 008137 395 GNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTA 474 (576)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (576)
. ...+..+.+.+++.+ ...|.
T Consensus 347 -------------------------------------------------------~---~~~~~~~~l~glg~~-~i~P~ 367 (438)
T PRK10133 347 -------------------------------------------------------G---HVGLIALTLCSAFMS-IQYPT 367 (438)
T ss_pred -------------------------------------------------------C---hHHHHHHHHHHHHHH-HHHHH
Confidence 0 111223333333333 34456
Q ss_pred cchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHH
Q 008137 475 PWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALG-SAGTFLLFAGFSLLGLV 535 (576)
Q Consensus 475 ~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~i~~~ 535 (576)
.++...|..|+ ..+++.++..+ ...|+.++|.+.|.+.|..| .+..|++..+..+....
T Consensus 368 ~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 368 IFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred HHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 66777777765 46788888864 55788899999999999887 56666655444444333
No 61
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.96 E-value=8.6e-30 Score=260.97 Aligned_cols=280 Identities=19% Similarity=0.230 Sum_probs=222.2
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHH
Q 008137 23 TTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLG 102 (576)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~ 102 (576)
..+..++.+.++++..++++.|++.+..+++.+++.||.+++.. |++.+++.+++.+.++++|+++|||.||+++.+
T Consensus 27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~---Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~v 103 (493)
T KOG1330|consen 27 SMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSEL---GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAV 103 (493)
T ss_pred ccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhc---cchhHHHHHHHHHHHHHHHHHHhhcCcceEEee
Confidence 44566778889999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008137 103 ADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKA 182 (576)
Q Consensus 103 ~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~ 182 (576)
|+.+|.++.++++++..+|++.++|.+.|+|++...|.++++++|.+|..+|++.+++++.+..+|..+|++++..+...
T Consensus 104 G~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~ 183 (493)
T KOG1330|consen 104 GIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL 183 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CchhHHHHHHhHHHHHHHHHHHh-hccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhh
Q 008137 183 PGTWRWMLGVAGLPAVVQFGLMM-MLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDM 261 (576)
Q Consensus 183 ~~~Wr~~f~v~~~~~~~~~~~~~-~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (576)
.+.|||.|++.++++++..++.+ +.+|.+|... ++... .........+.
T Consensus 184 ~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~-----~~~~~-------------------------~~~~~~~~ts~ 233 (493)
T KOG1330|consen 184 TFWWRWAFRGSAVLGVIVGLLVFLFVREPERGAR-----DEVDG-------------------------ENKMVKPFTSV 233 (493)
T ss_pred ccceEEEEEeehHHHHHHHHHHHhhccCcccccc-----ccccc-------------------------CCcCCCCccch
Confidence 77799999999999999887754 4555433100 00000 00000111122
Q ss_pred HHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHh---hcCCchhHHHHHHHHHhHHHHHHHHHHHHhhc
Q 008137 262 ISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQF---AGFASKSTALALSLVTSGLNALGSIVSMAFVD 338 (576)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d 338 (576)
+++.+.+.+++...-..+......+. ...+.+|.|.+... ..+.+..+...+..+...++.+|.+++|.++|
T Consensus 234 ~kDl~~l~~~~v~v~~sl~~~a~~fv-----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd 308 (493)
T KOG1330|consen 234 WKDLKVLAKIKVFVLSSLGIIAAQFV-----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISD 308 (493)
T ss_pred HHHHHHHHccCceeeehHHHHHHHHh-----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHH
Confidence 34555555555544443333333333 45555566665442 12224456667778888899999999999999
Q ss_pred cc
Q 008137 339 KY 340 (576)
Q Consensus 339 k~ 340 (576)
|+
T Consensus 309 ~~ 310 (493)
T KOG1330|consen 309 KL 310 (493)
T ss_pred HH
Confidence 94
No 62
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.96 E-value=1e-26 Score=246.89 Aligned_cols=371 Identities=14% Similarity=0.042 Sum_probs=259.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 008137 34 AGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAII 113 (576)
Q Consensus 34 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~ 113 (576)
+.++.++..+....+....+.+.++++.+..+. +++.+.+.+++.++++++|+++||+|||++++++.+++++++++
T Consensus 8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~ 84 (393)
T PRK11195 8 IMAAQFFSALADNALLFAAIALLKELHYPDWSQ---PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL 84 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH---HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence 456667777755556666677788998877766 99999999999999999999999999999999999999999998
Q ss_pred HHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHh
Q 008137 114 MAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVA 193 (576)
Q Consensus 114 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~ 193 (576)
++++.++ ++.|+++|++.+...|...+++.|++|+++|+++.++.+....+|.++||.+++.+.+. .|+..+.+.
T Consensus 85 ~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~ 159 (393)
T PRK11195 85 MLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVC 159 (393)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 8887664 78899999999999999999999999999999999999999999999999999999875 378787777
Q ss_pred HHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccch
Q 008137 194 GLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKI 273 (576)
Q Consensus 194 ~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (576)
+...++..+..+.+||+|++...++ .++. .. .. +.....+..++++.
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~-~~-------------~~------------------~~~~~~~~l~~~~~ 206 (393)
T PRK11195 160 ALIYLLAALFNLFIPRLGARRPGQS-WNPI-AL-------------LR------------------DFFHACRVLWRDKL 206 (393)
T ss_pred HHHHHHHHHHHhcCCCCcccccccC-CCHH-HH-------------HH------------------HHHHHHHHHHhCch
Confidence 6665555555667888653211110 0000 00 00 00012234444544
Q ss_pred hhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHH
Q 008137 274 VRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGL 353 (576)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~ 353 (576)
.+...+.... .+.......+..|.++++..+.+..+.+.+.....++.++++++.+++.||.++++.+..+.. .
T Consensus 207 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~ 280 (393)
T PRK11195 207 GRFSLAGTTL-----FWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-M 280 (393)
T ss_pred hHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-H
Confidence 4332221111 112223344455666666656678888898899999999999999999999998887766643 3
Q ss_pred HHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccc
Q 008137 354 SSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTD 433 (576)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (576)
.+...++.....
T Consensus 281 ~~~~~~~~~~~~-------------------------------------------------------------------- 292 (393)
T PRK11195 281 GLVVLLMALQHS-------------------------------------------------------------------- 292 (393)
T ss_pred HHHHHHHHHHhH--------------------------------------------------------------------
Confidence 332222221110
Q ss_pred cccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccc-cccchhHHHHHHHHHHHHHHHHHHH
Q 008137 434 TLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRY-RGVGGGIAAVSNWTSNLIVSLTFLT 512 (576)
Q Consensus 434 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-rg~~~g~~~~~~~~g~~~~~~~~~~ 512 (576)
.+..++...+.+.+.+....+ ..+...+..|++. +|++.++.+...+++..++..+.+.
T Consensus 293 -------------------~~~~~~~~~~~G~~~g~~~~~-~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~ 352 (393)
T PRK11195 293 -------------------LLPAYPLLILIGALGGFFVVP-MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSL 352 (393)
T ss_pred -------------------HHHHHHHHHHHHHhhhhhhhh-HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHH
Confidence 133333333444444333333 3455567655554 7999999999999999999998885
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHHhh
Q 008137 513 LTEALGSAGTFLLFAGFSLLGLVAIYLL 540 (576)
Q Consensus 513 l~~~~g~~~~~~~~~~~~~i~~~~~~~~ 540 (576)
+ +..|.+..+++.+...++++.+.+.+
T Consensus 353 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 353 L-VKLGVPVVAVIVGFGLLVALAMALLW 379 (393)
T ss_pred H-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4 67788877777666666665555444
No 63
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.96 E-value=9.6e-28 Score=244.39 Aligned_cols=385 Identities=19% Similarity=0.191 Sum_probs=300.6
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137 25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD 104 (576)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~ 104 (576)
+..++.+.+..+...+......+++++.+.+.++++.+++|. +++.++..+...+..++.|.+.||||.|++..++.
T Consensus 10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~---~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~ 86 (417)
T COG2223 10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQK---GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSM 86 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHH---HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHH
Confidence 344556666667777788888999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchH---HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008137 105 VLFFIGAIIMAIAPQP---WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTK 181 (576)
Q Consensus 105 ~~~~i~~~~~~~~~~~---~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~ 181 (576)
++..+-++..+++.++ +++++.+++.|++.| .+..+..++++|+|++++|.++|++. ..++|..+...++..+..
T Consensus 87 ~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~ 164 (417)
T COG2223 87 LLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV 164 (417)
T ss_pred HHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH
Confidence 9999999999998654 499999999999655 78889999999999999999999999 888888887777777766
Q ss_pred CCc--hhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccc
Q 008137 182 APG--TWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIG 258 (576)
Q Consensus 182 ~~~--~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (576)
..+ .||....+..+..++..+. ++...|.|......++...
T Consensus 165 ~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~------------------------------------ 208 (417)
T COG2223 165 AFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP------------------------------------ 208 (417)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch------------------------------------
Confidence 554 3999988888877775554 6677777653211111000
Q ss_pred hhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhc
Q 008137 259 KDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVD 338 (576)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d 338 (576)
...+..++++. .+.+.+.+...+.++..+..+.|.|+++....++.+++.+.......+.+.++++|+++|
T Consensus 209 ----~~~~~v~~~~~-----~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsD 279 (417)
T COG2223 209 ----AQLKAVFSNKD-----TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSD 279 (417)
T ss_pred ----hHHHHHhcCcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhh
Confidence 12233333333 333555666677778888899999999887778889988888888889999999999999
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCC
Q 008137 339 KYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGN 418 (576)
Q Consensus 339 k~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (576)
|+|.++++...+..++++..++.+......+.
T Consensus 280 R~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~------------------------------------------------ 311 (417)
T COG2223 280 RIGGRRVTLAVFVGMALAAALLSLFLTGFGHG------------------------------------------------ 311 (417)
T ss_pred hccchhHHHHHHHHHHHHHHHHHccccccccC------------------------------------------------
Confidence 99999999998888888888777653321100
Q ss_pred CCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHH
Q 008137 419 EYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVS 498 (576)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~ 498 (576)
...+..+..+.....+.+.+.+. .+-++..++|. +.|.+.|+....
T Consensus 312 --------------------------------~~~~~~~~~~l~l~~~~G~GnGs-vfk~Ip~if~~-~~G~v~G~vga~ 357 (417)
T COG2223 312 --------------------------------GSFVVFVAVFLALFVFAGLGNGS-VFKMIPVIFPK-ETGAVTGIVGAI 357 (417)
T ss_pred --------------------------------cchHHHHHHHHHHHHHhccCcch-heeechHHHHh-hhhHHHHHHHHh
Confidence 00133344444444555555443 44566777764 668999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHhhc
Q 008137 499 NWTSNLIVSLTFLTLTEALG-SAGTFLLFAGFSLLGLVAIYLLV 541 (576)
Q Consensus 499 ~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~~~ 541 (576)
+.+|++..|...+...+..| +...|+++..+.+++.++.+...
T Consensus 358 G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 358 GGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred ccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 66788888888888888776644
No 64
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.96 E-value=1.3e-26 Score=244.00 Aligned_cols=269 Identities=19% Similarity=0.208 Sum_probs=209.0
Q ss_pred hhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHH
Q 008137 43 YDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWV 122 (576)
Q Consensus 43 ~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~ 122 (576)
+....+.|.+|.+.+++|.+..+. +++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 81 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSV---QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQ 81 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 445677799999999999998888 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHH
Q 008137 123 IILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFG 202 (576)
Q Consensus 123 l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~ 202 (576)
+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.|++.+++.++..+
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~ 160 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAA 160 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888766 99999998888777655
Q ss_pred H-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHH
Q 008137 203 L-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAG 281 (576)
Q Consensus 203 ~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (576)
. .+.+||+++... +++. +. ++..++.++.++++..+.
T Consensus 161 ~~~~~~~~~~~~~~-~~~~-~~-----------------------------------~~~~~~~~~~~~~~~~~~----- 198 (377)
T PRK11102 161 LVFFFIPETLPKER-RQPF-HL-----------------------------------RTTIRNFASLFRHKRVLG----- 198 (377)
T ss_pred HHHHhCCccCcccc-cCCC-Ch-----------------------------------HHHHHHHHHHHcChHHHH-----
Confidence 4 455676542100 0000 00 000022333444443222
Q ss_pred HHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHH
Q 008137 282 VTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCL 357 (576)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~ 357 (576)
........+.+......+.|.++.+..+.+..+.+.......++.+++.++.+++.||+|||+.+..+..+..+..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~ 274 (377)
T PRK11102 199 YMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMG 274 (377)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 2222223333444555566666655434467778888888888999999999999999999998887776544443
No 65
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.96 E-value=3.8e-26 Score=249.17 Aligned_cols=375 Identities=13% Similarity=0.074 Sum_probs=257.9
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CchHH-HHHHHHH
Q 008137 33 SAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF-----GRKIS-LLGADVL 106 (576)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~-----Grr~~-~~~~~~~ 106 (576)
.+.+..+..++.....++.+|.+.++.|.+..+. +.. +.....+ ++.+++|+++||+ |||+. ++++.+.
T Consensus 16 ~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~i---g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~ 90 (491)
T PRK11010 16 ILLILGFASGLPLALTSGTLQAWMTVENIDLKTI---GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLL 90 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH---HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHH
Confidence 3444455677788888899999999988877777 665 3333333 6889999999999 99885 6678777
Q ss_pred HHHHHHHHHhc---chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Q 008137 107 FFIGAIIMAIA---PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTK-A 182 (576)
Q Consensus 107 ~~i~~~~~~~~---~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~-~ 182 (576)
.+++.+.+++. ++++.+.+.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+...+.+ .
T Consensus 91 ~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~ 170 (491)
T PRK11010 91 LLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRY 170 (491)
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 87887777775 4788899999999999999999999999999999999999999999999999999999999888 3
Q ss_pred CchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhH
Q 008137 183 PGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMI 262 (576)
Q Consensus 183 ~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (576)
.+ ||..|++.+++.++..+..+++||+++.. +.+ ++.+ . ...
T Consensus 171 ~G-Wr~~f~i~a~l~ll~~l~~~~~~e~~~~~--~~~-~~~~-------------~---------------------~~~ 212 (491)
T PRK11010 171 LG-WQGMYWLMAALLIPCIIATLLAPEPTDTI--PVP-KTLE-------------Q---------------------AVV 212 (491)
T ss_pred cC-HHHHHHHHHHHHHHHHHHHHhcCCCcccc--ccc-cchh-------------h---------------------hHH
Confidence 45 99999999988777766666677764311 000 0000 0 000
Q ss_pred HHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHH-HhhcCCchhHHHHHH-HHHhHHHHHHHHHHHHhhccc
Q 008137 263 SRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIV-QFAGFASKSTALALS-LVTSGLNALGSIVSMAFVDKY 340 (576)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~ig~~~~g~l~dk~ 340 (576)
.++++.++++..+.. ....+... ........+.+.++ ++.+. +..+.+... ....++.++|.+++|+++||+
T Consensus 213 ~~l~~~~~~~~~~~~----ll~~~l~~-~~~~~~~~~~~~~l~~~~G~-s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~ 286 (491)
T PRK11010 213 APLRDFFGRNNAWLI----LLLIVLYK-LGDAFAMSLTTTFLIRGVGF-DAGEVGLVNKTLGLLATIVGALYGGILMQRL 286 (491)
T ss_pred HHHHHHHcCcCHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344444332221 11112211 22223333445554 44555 666777765 455678899999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCC
Q 008137 341 GRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEY 420 (576)
Q Consensus 341 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (576)
++|+.+..+.++..++.+.+...... ..
T Consensus 287 g~~~~l~i~~~l~~l~~l~~~~l~~~-~~--------------------------------------------------- 314 (491)
T PRK11010 287 SLFRALMIFGILQGVSNAGYWLLSIT-DK--------------------------------------------------- 314 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-cc---------------------------------------------------
Confidence 99887766555544444333221110 00
Q ss_pred CCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHH
Q 008137 421 LPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNW 500 (576)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~ 500 (576)
..+......++....++.+. +..+++..++.+++.+++..|+.+....
T Consensus 315 -------------------------------~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~ 362 (491)
T PRK11010 315 -------------------------------NLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSA 362 (491)
T ss_pred -------------------------------cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 01121222222111222122 2335677788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhh
Q 008137 501 TSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLL 540 (576)
Q Consensus 501 ~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~ 540 (576)
+|..+++.+.|.+.|..||...|.+.+++++++.+..++.
T Consensus 363 lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 363 VGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888888888887776554
No 66
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.96 E-value=5.8e-26 Score=241.02 Aligned_cols=365 Identities=12% Similarity=0.070 Sum_probs=242.8
Q ss_pred HHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHH-HHHHHHHHHHHHHhhhccCchHHH-HHHHHHHHHHHH
Q 008137 36 IGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMA-VAGAIFGAGFGGWINDRFGRKISL-LGADVLFFIGAI 112 (576)
Q Consensus 36 l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~-~~~~~i~~~~~G~l~dr~Grr~~~-~~~~~~~~i~~~ 112 (576)
++.++..+....+.+.+|. +.++++.+..+. |++.+.. .++..++++++|+ .||+|||+.+ +.+.++.+++..
T Consensus 22 ~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~ 97 (393)
T PRK15011 22 IVAFLTGIAGALQTPTLSIFLTDEVHARPAMV---GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACT 97 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHH
Confidence 4456666676777777776 568899988888 9987765 4566666666666 9999999874 566677778888
Q ss_pred HHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchh--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 008137 113 IMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIR--GALVSANGFLITGGQFLAYLINLAFTKAPGTWRWML 190 (576)
Q Consensus 113 ~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R--~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f 190 (576)
+.+++++++.+++.+.+.|...+...|....++.|+.++++| +...++.+.+.++|.+++|++++.+.+..+ ||+.|
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~~~f 176 (393)
T PRK15011 98 LFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FTVMY 176 (393)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hHHHH
Confidence 889999999887666555555566788888888998876655 345678889999999999999999988776 99999
Q ss_pred HHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhc
Q 008137 191 GVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAF 269 (576)
Q Consensus 191 ~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (576)
++.++..++..+. ++++||.++.. ++.++ +. +..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------------------------~~---------~~~~--- 212 (393)
T PRK15011 177 LSAAVAFIVCGVMVWLFLPSMRKEL---PLATG-----------------------------TL---------EAPR--- 212 (393)
T ss_pred HHHHHHHHHHHHHHHhhcCccCCCC---ccccc-----------------------------cc---------cccc---
Confidence 9998877766555 45577764310 00000 00 0000
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHH
Q 008137 270 GNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVS 349 (576)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~ 349 (576)
+++ +..+..+... ...+.....+..+.|.++++..+.+....+.+.....+..+++.++.|+++||++||+.+..+
T Consensus 213 ~~~---~~~~~~~~~~-~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~ 288 (393)
T PRK15011 213 RNR---RDTLLLFVIC-TLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVA 288 (393)
T ss_pred ccc---ccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 011 1111111111 222233444556788888665444666677666666677788999999999999999987766
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccc
Q 008137 350 MFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDE 429 (576)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (576)
.....+.+..+.....
T Consensus 289 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 304 (393)
T PRK15011 289 AVAGVCFYAGMLMAHS---------------------------------------------------------------- 304 (393)
T ss_pred HHHHHHHHHHHHHHhh----------------------------------------------------------------
Confidence 5544433322211100
Q ss_pred cccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHH
Q 008137 430 KSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLT 509 (576)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~ 509 (576)
.+..+....+..+.++... +....+..|.+|+ .||+++++.+...++|..++|.+
T Consensus 305 -----------------------~~~~l~~~~l~~~~~g~~~-~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l 359 (393)
T PRK15011 305 -----------------------PAILLGLQLLNAIYIGILG-GIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSL 359 (393)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHH
Confidence 1222222222222222111 1223556788875 58999999999999999999999
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHHhhccC
Q 008137 510 FLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPE 543 (576)
Q Consensus 510 ~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 543 (576)
.|.+.+..|++..+.+.+++.+++++..++ .||
T Consensus 360 ~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 392 (393)
T PRK15011 360 AGIVAEIWNYHAVFWFALVMIIATLFCLLR-IKD 392 (393)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-hcC
Confidence 999999999988888877777777666543 454
No 67
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.96 E-value=9.5e-26 Score=239.19 Aligned_cols=352 Identities=15% Similarity=0.083 Sum_probs=247.7
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 008137 29 KLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFF 108 (576)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~ 108 (576)
+.+.+..+...+..+......+.+|.+.++++.+..+. +++.+++.++..++++++|+++||+|||+++.++.++..
T Consensus 8 ~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~ 84 (394)
T PRK11652 8 NLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAV---QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFI 84 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence 33444444445566777788889999999999999888 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 008137 109 IGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRW 188 (576)
Q Consensus 109 i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~ 188 (576)
++.+++.++++++.+++.|++.|++.+...+....+..|++++++|+++.+..+.+..+|..++|.+++.+.+..+ ||+
T Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~ 163 (394)
T PRK11652 85 LGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WRA 163 (394)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hHH
Confidence 9999999999999999999999999998888888999999999999999999999999999999999999887766 999
Q ss_pred HHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhh
Q 008137 189 MLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKG 267 (576)
Q Consensus 189 ~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (576)
.|++.++..++..+. .+++||+++.. +++ ++ ..+..++
T Consensus 164 ~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~--------------------------------------~~~~~~~ 202 (394)
T PRK11652 164 CYLFLLLLGAGVTFSMARWMPETRPAD--ARR-TR--------------------------------------VLASYRT 202 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccCccc--cch-hH--------------------------------------HHHHHHH
Confidence 999988776655443 45677764310 000 00 0023334
Q ss_pred hcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHH
Q 008137 268 AFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMI 347 (576)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~ 347 (576)
.++++..+..... .+..+.+...+..+.+.++++..+.+....+.+.....++.+++.++.+++.||.+++...
T Consensus 203 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~- 276 (394)
T PRK11652 203 LLSNRRFNCYLLM-----LIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ- 276 (394)
T ss_pred HHcChHHHHHHHH-----HHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4455544332211 1122233444455566777775444666777777777777888888888888888733322
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccc
Q 008137 348 VSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLI 427 (576)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (576)
......++.+.+.......
T Consensus 277 -~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 295 (394)
T PRK11652 277 -SVICCLLAGLLMWIPGWFG------------------------------------------------------------ 295 (394)
T ss_pred -HHHHHHHHHHHHHHHHHhc------------------------------------------------------------
Confidence 2222222222221111100
Q ss_pred cccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHH
Q 008137 428 DEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVS 507 (576)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~ 507 (576)
....+.......+...+.+. ..+....+..|.+| +.+|+..++.+....+|..+++
T Consensus 296 ----------------------~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~ 351 (394)
T PRK11652 296 ----------------------VMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAA 351 (394)
T ss_pred ----------------------cccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHH
Confidence 00113333333444444332 34455566678776 5789999999999999999999
Q ss_pred HHHHHHHHh
Q 008137 508 LTFLTLTEA 516 (576)
Q Consensus 508 ~~~~~l~~~ 516 (576)
.+.+.+.+.
T Consensus 352 ~~~~~~~~~ 360 (394)
T PRK11652 352 LLSAMLPQT 360 (394)
T ss_pred HHHHHccCC
Confidence 988876544
No 68
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.96 E-value=1.1e-25 Score=239.34 Aligned_cols=360 Identities=15% Similarity=0.120 Sum_probs=249.6
Q ss_pred HHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008137 36 IGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM 114 (576)
Q Consensus 36 l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~ 114 (576)
...++.........+.++. +.++++.+..+. |++.+...++..+.+++.|+++||+|||+++.++.++..++.+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~ 93 (400)
T PRK11646 17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMV---GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATM 93 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH---HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 3444445555555666654 678899988888 999999999999999999999999999999999999999999999
Q ss_pred HhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhH
Q 008137 115 AIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAG 194 (576)
Q Consensus 115 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~ 194 (576)
+++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..+||.+++.+. .. +||+.|++.+
T Consensus 94 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~-g~~~~f~~~~ 171 (400)
T PRK11646 94 AIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY-DFRLVCATGA 171 (400)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-hHHHHHHHHH
Confidence 999999999999999999999889999999999999999999999999999999999999999998 44 4999999988
Q ss_pred HHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccch
Q 008137 195 LPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKI 273 (576)
Q Consensus 195 ~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (576)
+..++..+. .+++||.+. .+.+ ++ ..++++..++++.
T Consensus 172 ~~~~~~~i~~~~~~~~~~~---~~~~-~~--------------------------------------~~~~~~~~~~~~~ 209 (400)
T PRK11646 172 VLFVLAAAFNAWLLPAYKL---STVR-TP--------------------------------------VREGMTRVLRDKR 209 (400)
T ss_pred HHHHHHHHHHHHhCCcccc---cccc-hh--------------------------------------hHHHHHHHHcCch
Confidence 776665444 344554211 0000 00 0022333444443
Q ss_pred hhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhh-cccCChHHHHHHHHH
Q 008137 274 VRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFV-DKYGRRRLMIVSMFG 352 (576)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~-dk~grr~~~~~~~~~ 352 (576)
++.... ..+..+........+.|.++++.++ +....+.+.....++...+....+.+. ||++.++.+..++++
T Consensus 210 ~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 283 (400)
T PRK11646 210 FVTYVL-----TLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLI 283 (400)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 322111 1111111122334577888888777 445566665555555554444445555 456656666666666
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccc
Q 008137 353 LSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKST 432 (576)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (576)
..++.+++.....
T Consensus 284 ~~~~~~~l~~~~~------------------------------------------------------------------- 296 (400)
T PRK11646 284 MSLSMFPIGMVSN------------------------------------------------------------------- 296 (400)
T ss_pred HHHHHHHHHHhhh-------------------------------------------------------------------
Confidence 6666554443311
Q ss_pred ccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 008137 433 DTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLT 512 (576)
Q Consensus 433 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~ 512 (576)
.+..++...++..+.. ...|...++..+..|++.||++.|+.+....+|..++|.+.|.
T Consensus 297 --------------------~~~~~~~~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~ 355 (400)
T PRK11646 297 --------------------LQQLFTLICLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGW 355 (400)
T ss_pred --------------------HHHHHHHHHHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHH
Confidence 1222222233333332 2234555778899999999999999999999999999999999
Q ss_pred HHHhhc----cchhhHHHHHHHHHHHHH
Q 008137 513 LTEALG----SAGTFLLFAGFSLLGLVA 536 (576)
Q Consensus 513 l~~~~g----~~~~~~~~~~~~~i~~~~ 536 (576)
+.|..+ ...+++..+++++++.+.
T Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 356 LFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 998854 234455555555555444
No 69
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.95 E-value=1.2e-25 Score=239.74 Aligned_cols=356 Identities=10% Similarity=0.026 Sum_probs=250.6
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 008137 31 ALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIG 110 (576)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~ 110 (576)
+..+++..++.+++.+..++++|.++++++.+..+. |++.+.+.+++.+++++.|++.||+|||+++.++.++++++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~---g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQA---ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 446667778889999999999999999999999888 99999999999999999999999999999999999999999
Q ss_pred HHHHHh---cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC----
Q 008137 111 AIIMAI---APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP---- 183 (576)
Q Consensus 111 ~~~~~~---~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~---- 183 (576)
.++... .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++.++..+....
T Consensus 82 ~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~ 161 (410)
T TIGR00885 82 AFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQ 161 (410)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 988644 4689999999999999999999999999999999999999999999999999999999988774321
Q ss_pred ---------------------chhHHHHHHhHHHHHHHHHHHhh--ccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHH
Q 008137 184 ---------------------GTWRWMLGVAGLPAVVQFGLMMM--LPESPRWLYRQNKVDEARAILEKIYPADQVEEEV 240 (576)
Q Consensus 184 ---------------------~~Wr~~f~v~~~~~~~~~~~~~~--l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~ 240 (576)
.+||++|++.+++.++..+.+.+ +||.++ ++.++ .
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~~~~--~--------------- 219 (410)
T TIGR00885 162 SQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SDAKQ--I--------------- 219 (410)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----ccccc--c---------------
Confidence 24999999988877765544433 343211 00000 0
Q ss_pred HHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhc-CCchhHHHHHH
Q 008137 241 NLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAG-FASKSTALALS 319 (576)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 319 (576)
+...+.++.++++..+.. ....+...........+.+.|.++.+ ..+...+....
T Consensus 220 -------------------~~~~~~~~~~~~~~~~~~-----~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~ 275 (410)
T TIGR00885 220 -------------------SFSASLSRLARIRHYREG-----VIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYN 275 (410)
T ss_pred -------------------cchhhHHHHHhChhHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 000122233444443321 11122222222334456677776543 22333333344
Q ss_pred HHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCc
Q 008137 320 LVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKS 399 (576)
Q Consensus 320 ~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (576)
.......++|+++++++.||+++|+++.+..++..++.++......
T Consensus 276 ~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~---------------------------------- 321 (410)
T TIGR00885 276 IGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGG---------------------------------- 321 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC----------------------------------
Confidence 4445667899999999999999999887776666666555443210
Q ss_pred ccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhc
Q 008137 400 WNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVN 479 (576)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (576)
......+.+.+.+.+ .+.|..++..
T Consensus 322 ------------------------------------------------------~~~~~~l~~~glf~s-~~fp~i~sl~ 346 (410)
T TIGR00885 322 ------------------------------------------------------HVGLYCLTLCSAFMS-LMFPTIYGIA 346 (410)
T ss_pred ------------------------------------------------------hHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 122333334444443 3346777888
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhh------ccchhhHHH
Q 008137 480 SEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEAL------GSAGTFLLF 526 (576)
Q Consensus 480 ~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~------g~~~~~~~~ 526 (576)
.+..+++.+..+.++... .+|+.+.|.+.|.+.|.. +.+.+|++.
T Consensus 347 ~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~ 397 (410)
T TIGR00885 347 LKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILP 397 (410)
T ss_pred HhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHH
Confidence 888876655444444443 399999999999999954 355555543
No 70
>PRK10054 putative transporter; Provisional
Probab=99.95 E-value=9.9e-26 Score=239.41 Aligned_cols=365 Identities=11% Similarity=0.046 Sum_probs=255.2
Q ss_pred HHHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 008137 35 GIGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAII 113 (576)
Q Consensus 35 ~l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~ 113 (576)
.+..++.........+.+|. +.+++|.+..+. |++.+++.++..+++++.|+++||+|||++++++.++.+++.++
T Consensus 13 ~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~---g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~ 89 (395)
T PRK10054 13 LASSLLLTIGRGATLPFMTIYLSRQYSLSVDLI---GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIA 89 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH
Confidence 34556667777777777765 557899999888 99999999999999999999999999999999999999999999
Q ss_pred HHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHh
Q 008137 114 MAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVA 193 (576)
Q Consensus 114 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~ 193 (576)
.+++++++.++++|++.|.+.+...+....+..|.+|+++|++++++.+...++|..++|++++.+.+ . +||+.|++.
T Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~-g~~~~f~~~ 167 (395)
T PRK10054 90 IPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q-SINLPFWLA 167 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccCcHHHHH
Confidence 99999999999999999998888888899999999999999999999999999999999999999875 4 499999998
Q ss_pred HHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccc
Q 008137 194 GLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNK 272 (576)
Q Consensus 194 ~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (576)
+++.++.++. .+.+||+++.. +.+ ++ + . .+.++.++++
T Consensus 168 ~~~~~i~~i~~~~~~~~~~~~~--~~~-~~--~----------------------------~--------~~~~~~~~~~ 206 (395)
T PRK10054 168 AICSAFPLVFIQIWVQRSEKAI--ATE-TG--S----------------------------V--------WSPSVLLQDK 206 (395)
T ss_pred HHHHHHHHHHHHHHHhcccccc--ccc-hh--h----------------------------h--------hhhhhhccCc
Confidence 8877776544 34455543210 000 00 0 0 1113344444
Q ss_pred hhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhc--CCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHH
Q 008137 273 IVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAG--FASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSM 350 (576)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~ 350 (576)
..+.......+. .+ .......+.+.+..... ..+....+.......+......+..+.+.||.++|+.+..++
T Consensus 207 ~~~~~~~~~~l~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~ 281 (395)
T PRK10054 207 ALLWFTCSGFLA----SF-VSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGT 281 (395)
T ss_pred eehHHHHHHHHH----HH-HHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHH
Confidence 443322221111 11 12222233444443221 113444455555555555666778889999999999888887
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccc
Q 008137 351 FGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEK 430 (576)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (576)
.+..++..++......
T Consensus 282 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 297 (395)
T PRK10054 282 LCFVIGLVGFIFSGNS---------------------------------------------------------------- 297 (395)
T ss_pred HHHHHHHHHHHHcchH----------------------------------------------------------------
Confidence 7777666555432110
Q ss_pred ccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHH
Q 008137 431 STDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTF 510 (576)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~ 510 (576)
.+...+...++..+.. ...|.......+..|++.|++..+..+ ..++|..++|.+.
T Consensus 298 ----------------------~~~~~~~~~~~~~g~~-~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~ 353 (395)
T PRK10054 298 ----------------------LLLWGMSAAVFTVGEI-IYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVS 353 (395)
T ss_pred ----------------------HHHHHHHHHHHHHHHH-HHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHH
Confidence 1222223333333322 223455567788899999999988755 6779999999999
Q ss_pred HHHHHhhccchhhHHHHHHHHHHHHHHH
Q 008137 511 LTLTEALGSAGTFLLFAGFSLLGLVAIY 538 (576)
Q Consensus 511 ~~l~~~~g~~~~~~~~~~~~~i~~~~~~ 538 (576)
|.+.|..|+...|++.+.+..+..++..
T Consensus 354 G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 354 GVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 9999999887777776665555554443
No 71
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.95 E-value=2.9e-26 Score=239.98 Aligned_cols=292 Identities=17% Similarity=0.122 Sum_probs=207.2
Q ss_pred HHHHHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008137 33 SAGIGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA 111 (576)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~ 111 (576)
+.+++.++...+...+.+..|. +.+++|.+..+. +++.+++.+++.+++++.|+++||+|||+.++++.+++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQL---GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPC 81 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHh---hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 4556667778888889999995 999999999888 999999999999999999999999999999999999999999
Q ss_pred HHHHhcc-hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC--------
Q 008137 112 IIMAIAP-QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKA-------- 182 (576)
Q Consensus 112 ~~~~~~~-~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~-------- 182 (576)
+++++++ +++.+++.|+++|++.+ ..+....+++|++|+++|++++++......+|..+++.+++.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~ 160 (366)
T TIGR00886 82 LWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP 160 (366)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999 99999999999999866 4566789999999999999999999977777777777666554431
Q ss_pred -CchhHHHH-HHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccch
Q 008137 183 -PGTWRWML-GVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGK 259 (576)
Q Consensus 183 -~~~Wr~~f-~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (576)
..+||+.| +..+++..+..++ +...+|+|+... +.++.+. .+. ... .+ +
T Consensus 161 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~-~~~---------~~--------~ 212 (366)
T TIGR00886 161 AHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKP---ATGKLSF-------KGA-RWS---------VG--------T 212 (366)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHhcccCCcccc---cchhccc-------ccc-ccc---------cc--------c
Confidence 11499999 4445544443333 445666653111 0000000 000 000 00 0
Q ss_pred hhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc
Q 008137 260 DMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDK 339 (576)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk 339 (576)
+.....++.++++..+ ...+..+..+.....+..+.|.++++..+.+..+++.+.....+.++++.++.|+++||
T Consensus 213 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r 287 (366)
T TIGR00886 213 GALGDQLKVFRDRHTW-----ILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR 287 (366)
T ss_pred hhHHHHHHHHhccchh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh
Confidence 0001223344443322 22222333333445566777888877655577777877778888889999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHH
Q 008137 340 YGRRRLMIVSMFGLSSCLVALA 361 (576)
Q Consensus 340 ~grr~~~~~~~~~~~~~~~~~~ 361 (576)
+|||+.+..+......+..++.
T Consensus 288 ~g~~~~~~~~~~~~~~~~~~~~ 309 (366)
T TIGR00886 288 LGGARKLLMSFLGVAMGAFLVV 309 (366)
T ss_pred hccchhHHHHHHHHHHHHHHHH
Confidence 9999887776665555554444
No 72
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.95 E-value=7.5e-27 Score=249.81 Aligned_cols=366 Identities=16% Similarity=0.178 Sum_probs=273.4
Q ss_pred HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhhh
Q 008137 57 EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP--QPWVIILGRIFVGLGV 134 (576)
Q Consensus 57 ~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~R~l~G~~~ 134 (576)
.+++.+..+. +++.+.++.|+.+++++.|+++||||.|+++..+.++.++++++..++. +++.+++.|++||++.
T Consensus 66 ~~~~ws~~~k---~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~ 142 (466)
T KOG2532|consen 66 GEYDWSSTEK---GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQ 142 (466)
T ss_pred ceecCCHHHH---HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHH
Confidence 3566777777 9999999999999999999999999999999999999999999998875 5567899999999999
Q ss_pred hhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhh-ccCChhH
Q 008137 135 GMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMM-LPESPRW 213 (576)
Q Consensus 135 g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~-l~esp~~ 213 (576)
|..+|....+.+.|.|++||++..++...+..+|.+++.+++|++.+...||+++|++.++.++++.++|++ ..|+|..
T Consensus 143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 999999999999999999999999999999999999999999999988334999999999999999988765 4666653
Q ss_pred HhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhh
Q 008137 214 LYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGI 293 (576)
Q Consensus 214 l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (576)
...- ..+| .+.+++...++...++ ...+++++++++. ++.+.+..+....+.
T Consensus 223 h~~i-s~~E-----------------l~~I~~~k~~~~~~~~-----~~vP~~~i~ts~~-----vwai~~~~f~~~~~~ 274 (466)
T KOG2532|consen 223 HPNI-SEKE-----------------LKYIEKGKSEAHVKKK-----PPVPYKAILTSPP-----VWAIWISAFGGNWGF 274 (466)
T ss_pred CCCC-CHHH-----------------HHHHHhcccccccCCC-----CCCCHHHHHcCHH-----HHHHHHHHHHHHHHH
Confidence 1111 1111 1111111111111100 1146677777664 444566666677778
Q ss_pred HHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCCh--------HH-HHHHHHHHHHHHHHHHHHH
Q 008137 294 NTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRR--------RL-MIVSMFGLSSCLVALAVVF 364 (576)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr--------~~-~~~~~~~~~~~~~~~~~~~ 364 (576)
..+..|.|.|++++.+.+....++++.++.+...+..+++|.++||+.+| |. -.+++...+++++.+.+..
T Consensus 275 ~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~ 354 (466)
T KOG2532|consen 275 YLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS 354 (466)
T ss_pred HHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC
Confidence 89999999999999888999999999999999999999999999998552 22 2344444444444444331
Q ss_pred HHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccccccccc
Q 008137 365 FQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYF 444 (576)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (576)
T Consensus 355 -------------------------------------------------------------------------------- 354 (466)
T KOG2532|consen 355 -------------------------------------------------------------------------------- 354 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH---hhccch
Q 008137 445 ISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE---ALGSAG 521 (576)
Q Consensus 445 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~---~~g~~~ 521 (576)
.+..+..++++.+.....+.... ......-...+++.+..+|+.+....+.++++|.+++.+.+ ...|+.
T Consensus 355 -----~~~~~~a~~~l~~~~~~~g~~~~--Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~ 427 (466)
T KOG2532|consen 355 -----DEHRLLAVILLTIAIGLSGFNIS--GFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRI 427 (466)
T ss_pred -----CCcchHHHHHHHHHHHHcccchh--hhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHH
Confidence 11123334444443333332222 11222222156888999999999999999999999999984 347888
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 008137 522 TFLLFAGFSLLGLVAIYLL 540 (576)
Q Consensus 522 ~~~~~~~~~~i~~~~~~~~ 540 (576)
.|++.+++.+++.++..++
T Consensus 428 VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 428 VFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHhchheeEe
Confidence 9999999998888665444
No 73
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.95 E-value=1.3e-25 Score=234.69 Aligned_cols=335 Identities=17% Similarity=0.188 Sum_probs=240.3
Q ss_pred hhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHH
Q 008137 44 DTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVI 123 (576)
Q Consensus 44 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l 123 (576)
....+++++|.+.+++|.+..+. +++.+++.++..+++++.|+++||+|||+++.++.++..++.+.+ .+++++.+
T Consensus 15 ~~~~~~~~lp~l~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l 90 (355)
T TIGR00896 15 ALTSVGPLLPQIRSALGMSFSVA---GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALL 90 (355)
T ss_pred ccccCcccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHH
Confidence 34567889999999999999888 999999999999999999999999999999999999988888887 78899999
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHhHHHHHHHHH
Q 008137 124 ILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG-TWRWMLGVAGLPAVVQFG 202 (576)
Q Consensus 124 ~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~-~Wr~~f~v~~~~~~~~~~ 202 (576)
++.|++.|++.+...+....++.|++| ++|++++++++.+..+|..+++.+.+.+.+..+ +||+.|.+.+++.++..
T Consensus 91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~- 168 (355)
T TIGR00896 91 FAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL- 168 (355)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-
Confidence 999999999999988888889999986 689999999999999999999999888876543 39999987766544332
Q ss_pred HHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHH
Q 008137 203 LMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGV 282 (576)
Q Consensus 203 ~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (576)
..++|+.++. +.+ ++ .... ...++.++++..+ ..
T Consensus 169 -~~~~~~~~~~---~~~-~~-----------------------------~~~~-------~~~~~~~~~~~~~-----~~ 202 (355)
T TIGR00896 169 -LAWIPQVRRR---VAA-NQ-----------------------------TTTR-------LTPVRIWRSPLAW-----QV 202 (355)
T ss_pred -HHHhhhhccc---cCC-CC-----------------------------CCCC-------CCCchhhcCHhHH-----HH
Confidence 2233433210 000 00 0000 1122333443322 22
Q ss_pred HHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhccc-CChHHHHHHHHHHHHHHHHHH
Q 008137 283 TVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKY-GRRRLMIVSMFGLSSCLVALA 361 (576)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~-grr~~~~~~~~~~~~~~~~~~ 361 (576)
..........+.....+.|.++++.+. +....+.......++.++++++.|++.||+ +||+.+..+.++..++.+.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~lp~~~~~~g~-~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 281 (355)
T TIGR00896 203 TVFFGLQSGLYYSLIGWLPAILISHGA-SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLL 281 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Confidence 222233334455666788999988765 677778888888999999999999999999 566666666666666655554
Q ss_pred HHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccc
Q 008137 362 VVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHR 441 (576)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (576)
+....
T Consensus 282 ~~~~~--------------------------------------------------------------------------- 286 (355)
T TIGR00896 282 FAPMH--------------------------------------------------------------------------- 286 (355)
T ss_pred Hhhhh---------------------------------------------------------------------------
Confidence 33110
Q ss_pred cccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcc-ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008137 442 TYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNS-EIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSA 520 (576)
Q Consensus 442 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~ 520 (576)
.... ...+++++.+ ...+....... +..+++.++...++.+....++..++|.+.|.+.|..|.+
T Consensus 287 ------------~~~~-~~~l~g~~~g-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~ 352 (355)
T TIGR00896 287 ------------GLWA-WALVLGLGQG-GAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNW 352 (355)
T ss_pred ------------HHHH-HHHHHHHhhh-hHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1111 2223333332 22233333333 3344567789999999999999999999999999988743
No 74
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.8e-26 Score=247.44 Aligned_cols=297 Identities=19% Similarity=0.143 Sum_probs=223.3
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137 26 YIMKLALSAGIGGLLFGYDTGVISGA-LLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD 104 (576)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~ 104 (576)
..+.++..+++..+....|...++-. +..+.+|.++...+. +.+.+++.++++++++++|.+.||++-.+.+....
T Consensus 42 ~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l---~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~ 118 (495)
T KOG2533|consen 42 LDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQL---GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSG 118 (495)
T ss_pred HHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhh---hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHH
Confidence 34455666677777777776654432 222557777777777 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC---
Q 008137 105 VLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTK--- 181 (576)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~--- 181 (576)
+++++-++++....|++.+++.|++.|+.+++.+|....+++.|+.++||++.++++.+..++|.++|.+++..+.+
T Consensus 119 ~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~ 198 (495)
T KOG2533|consen 119 ILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG 198 (495)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999998632
Q ss_pred ---CCchhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhccc
Q 008137 182 ---APGTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLI 257 (576)
Q Consensus 182 ---~~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (576)
.. +|||.|++.|+++++..+. ++++|+.|....-..+.++ +...+..++..... ..
T Consensus 199 ~~~~~-gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek------------------~~~~~~~~~~~~~~-~~ 258 (495)
T KOG2533|consen 199 SGGLA-GWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEK------------------ELVVERLRESPSGG-IE 258 (495)
T ss_pred CCCcC-CceeehhHHHHHHHHHHheEEEEecCChhhccccchHHH------------------HHHHHHHHhccCCC-cc
Confidence 23 5999999999998887665 6779999862211111000 00000000000000 00
Q ss_pred chhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhh
Q 008137 258 GKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFV 337 (576)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~ 337 (576)
.+-.+..+++.++++..+. ..+..++.....+.+.+|.|.++.+..+.+..++..+..+..++++++.+++|+++
T Consensus 259 ~~~~~~~~~~a~~dp~vw~-----~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~ls 333 (495)
T KOG2533|consen 259 NKFKWKGFKEALKDPGVWP-----FSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLS 333 (495)
T ss_pred cccCHHHHHHHHhchhHHH-----HHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHH
Confidence 0011255667777665443 44455555556788899999999985446888999999999999999999999999
Q ss_pred ccc----CChHHHHHHH
Q 008137 338 DKY----GRRRLMIVSM 350 (576)
Q Consensus 338 dk~----grr~~~~~~~ 350 (576)
||+ .+|.......
T Consensus 334 dr~~~~~~~~~~~~~~~ 350 (495)
T KOG2533|consen 334 DRLKTIFARRLLFIVFL 350 (495)
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 994 4454444333
No 75
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.95 E-value=5.7e-26 Score=253.80 Aligned_cols=307 Identities=14% Similarity=0.142 Sum_probs=225.0
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 008137 30 LALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFI 109 (576)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i 109 (576)
.++..++..+......+.++.+++.+.++|+++..+. |++.+.+.+++.++.++.|+++||+|||+.+.++.+++++
T Consensus 34 ~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~---G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~l 110 (633)
T TIGR00805 34 FSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSS---GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGL 110 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcc---eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHH
Confidence 3345556777788888999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc---------------------------------------------------hHHHHHHHHHHHHhhhhhhh
Q 008137 110 GAIIMAIAP---------------------------------------------------QPWVIILGRIFVGLGVGMAS 138 (576)
Q Consensus 110 ~~~~~~~~~---------------------------------------------------~~~~l~~~R~l~G~~~g~~~ 138 (576)
+++++++.+ .+..++++|+++|+|.+..+
T Consensus 111 g~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~ 190 (633)
T TIGR00805 111 GSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF 190 (633)
T ss_pred HHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch
Confidence 999998753 25567899999999999999
Q ss_pred hhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------------------chhHHHHHHhHHHH
Q 008137 139 MTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP---------------------GTWRWMLGVAGLPA 197 (576)
Q Consensus 139 ~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~---------------------~~Wr~~f~v~~~~~ 197 (576)
+...+++.|++|+++|++++++++.+..+|..+|+++++++.+.. +.||..|++.++++
T Consensus 191 ~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~ 270 (633)
T TIGR00805 191 PLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVA 270 (633)
T ss_pred hcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887542 13777898888888
Q ss_pred HHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhh
Q 008137 198 VVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRG 277 (576)
Q Consensus 198 ~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (576)
++..+.++++|++.+....+.+.+..++.. .....+ +.........++.....+.+++++.++
T Consensus 271 ~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~Ll~n~~f~-- 333 (633)
T TIGR00805 271 LLTSIPFFFFPKALPKEGKRVNVDVHETEK--LEKSED-------------KSRKKNSDITKDFPKIIKRLLCNPIYM-- 333 (633)
T ss_pred HHHHHHHHhCccccCCcccccchhhhhhhc--cccccc-------------ccchhhhhhHHHHHHHHHHHHcCcHHH--
Confidence 877766677776532110000000000000 000000 000000001112224556677766443
Q ss_pred hHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhH-HHHHHHHHHHHhhcccCC--hHHHHHHHHHHH
Q 008137 278 LYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSG-LNALGSIVSMAFVDKYGR--RRLMIVSMFGLS 354 (576)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ig~~~~g~l~dk~gr--r~~~~~~~~~~~ 354 (576)
...+..+.....+..+..|.|.|+++..+.+...++.+.....+ +.++|.+++|+++||+++ |+.+..++++..
T Consensus 334 ---~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~ 410 (633)
T TIGR00805 334 ---LVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLST 410 (633)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHH
Confidence 34444444555567788899999988766688888877766555 568999999999999984 566666666666
Q ss_pred HHHHH
Q 008137 355 SCLVA 359 (576)
Q Consensus 355 ~~~~~ 359 (576)
++.++
T Consensus 411 ~~~~~ 415 (633)
T TIGR00805 411 LSYLL 415 (633)
T ss_pred HHHHH
Confidence 65544
No 76
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.95 E-value=2.5e-25 Score=235.31 Aligned_cols=362 Identities=12% Similarity=-0.004 Sum_probs=261.1
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHH----HHHHHHHHH
Q 008137 34 AGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISL----LGADVLFFI 109 (576)
Q Consensus 34 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~----~~~~~~~~i 109 (576)
+.+..+..++......|.+|.+.+++|.+..+. |++.+++.+...++++++|+++||+|||... .++..+..+
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~i---g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~ 85 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMI---GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 446667777778899999999999999988888 9999999999999999999999999985433 223222222
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Q 008137 110 GAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWM 189 (576)
Q Consensus 110 ~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~ 189 (576)
.++.++++++.+++.|.++|.+.+...|...++..++ .++|+++.+......++|.++++++++.+.+..+ ||+.
T Consensus 86 --~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~ 160 (382)
T TIGR00902 86 --AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNI 160 (382)
T ss_pred --HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHH
Confidence 2445678999999999999999998899988887765 4778999999999999999999999999998887 9999
Q ss_pred HHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhc
Q 008137 190 LGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAF 269 (576)
Q Consensus 190 f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (576)
|++..+..++.++ .+.++|+++. .+++.++ +.+ ..++.++.+
T Consensus 161 f~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~-----------------------------~~~------~~~~~~~~l 202 (382)
T TIGR00902 161 LAILTAGLAFMLI-GFLIKPTIPP--KDAIPED-----------------------------ESQ------GDSAFIALL 202 (382)
T ss_pred HHHHHHHHHHHHH-HHHcCCCCCC--Ccccccc-----------------------------ccc------cchhHHHHH
Confidence 9887665333333 3334443210 0000000 000 002234555
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHH
Q 008137 270 GNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVS 349 (576)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~ 349 (576)
+++.++. .....+...........+.|.++++.+. +....+.+.....+..+++..+.+++.||+|+|+.+..+
T Consensus 203 ~~~~~~~-----~l~~~~l~~~~~~~~~~~~~~~l~~~g~-s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~ 276 (382)
T TIGR00902 203 KNPMNLR-----FLAAVCLIQGAHAAYYGFSAIYWQAAGI-SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLIS 276 (382)
T ss_pred cChHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHH
Confidence 5554433 2222233334455666677888888666 666777777788888899999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccc
Q 008137 350 MFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDE 429 (576)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (576)
.+...+..+++.....
T Consensus 277 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 292 (382)
T TIGR00902 277 AIACVGRWAIIGAIEA---------------------------------------------------------------- 292 (382)
T ss_pred HHHHHHHHHHHHhHhh----------------------------------------------------------------
Confidence 8888888776654422
Q ss_pred cccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHH-HHHHHHHHHHHH
Q 008137 430 KSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAA-VSNWTSNLIVSL 508 (576)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~-~~~~~g~~~~~~ 508 (576)
.+..+....+.+..++.. .+....++++. |++.|++..++++ ....+|..++|.
T Consensus 293 -----------------------~~~~~~~q~l~g~~~~~~-~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~ 347 (382)
T TIGR00902 293 -----------------------FPLIFLLQILHCGTFAVC-HLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTA 347 (382)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 133344444444444433 23344677777 8889999999986 456789999999
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHH
Q 008137 509 TFLTLTEALGSAGTFLLFAGFSLLGLVAI 537 (576)
Q Consensus 509 ~~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 537 (576)
+.|.+.|..|. ..|++.++++++++++.
T Consensus 348 ~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 348 FAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 99999999986 67888888887765543
No 77
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.94 E-value=1.1e-24 Score=233.09 Aligned_cols=374 Identities=12% Similarity=0.004 Sum_probs=233.1
Q ss_pred HHHHhhhhhhhhHHHHHHHHHH-hhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008137 36 IGGLLFGYDTGVISGALLYIKE-DFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM 114 (576)
Q Consensus 36 l~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~ 114 (576)
+..++..+....+.+.+|...+ ++|.+..+. |++.+++.++..++++++|+++||+|||++++++..+..++....
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~---g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~ 93 (420)
T PRK09528 17 LFFFFFFFIWSSWFSFFPIWLHDINGLSGTDT---GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPF 93 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 3444455555566677776554 599988888 999999999999999999999999999999988776665544322
Q ss_pred H---hcch-----HHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 008137 115 A---IAPQ-----PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTW 186 (576)
Q Consensus 115 ~---~~~~-----~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~W 186 (576)
. .++. ....++.+++.|.+.....+....+..+ . .++|++.++......++|..+++++++.+.+. +|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~ 169 (420)
T PRK09528 94 FIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI--NP 169 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc--Cc
Confidence 1 1111 1112223333333333323333333222 2 34567788888999999999999999988764 59
Q ss_pred HHHHHHhHHHHHHHHHHHhhcc-CChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHh
Q 008137 187 RWMLGVAGLPAVVQFGLMMMLP-ESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRL 265 (576)
Q Consensus 187 r~~f~v~~~~~~~~~~~~~~l~-esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (576)
+++|++.+++.++.++..+.++ |.++....+++ ++ .+.+ +...++.
T Consensus 170 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------------------------~~~~----~~~~~~~ 216 (420)
T PRK09528 170 QINFWLGSGSALILLVLLFFAKPDAPSTAKVANA-LG----------------------------ANAS----AVSLKDA 216 (420)
T ss_pred hHhHHHHHHHHHHHHHHHhcccccccchhhhccc-hh----------------------------cccc----cccHHHH
Confidence 9999998888777666655543 33221000000 00 0000 0001233
Q ss_pred hhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhc---CCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCC
Q 008137 266 KGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAG---FASKSTALALSLVTSGLNALGSIVSMAFVDKYGR 342 (576)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~gr 342 (576)
++.++++.++...+...... ........+.|.++.+.. ..+....+.+.....+...++.++.|++.||+|+
T Consensus 217 ~~~l~~~~~~~l~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~ 291 (420)
T PRK09528 217 LALLKLPKFWFLVLYVIGVA-----CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGA 291 (420)
T ss_pred HHHccCCCeEeehHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 45566665443222111111 112222223444444321 2244556677777777888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCC
Q 008137 343 RRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLP 422 (576)
Q Consensus 343 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (576)
|+.+..+.++..++.+++.+...
T Consensus 292 ~~~~~~~~~l~~~~~~l~~~~~~--------------------------------------------------------- 314 (420)
T PRK09528 292 KNALLLAGTIMAVRIIGSGFATG--------------------------------------------------------- 314 (420)
T ss_pred chhhHHHHHHHHHHHHHHHhccc---------------------------------------------------------
Confidence 99988877777776665543211
Q ss_pred CcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhH-HHHHHHH
Q 008137 423 GACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGI-AAVSNWT 501 (576)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~-~~~~~~~ 501 (576)
.+..+....+....+... .+....+..|.+|++.+++..+. .++...+
T Consensus 315 ------------------------------~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l 363 (420)
T PRK09528 315 ------------------------------PLEVSILKLLHAFEVPFL-LVGVFKYITLNFDVRLSATIYLVGFQFAKQL 363 (420)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccceeeeeeehHHHHHHH
Confidence 122232222222222211 12234567788899999988766 5777899
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhcc
Q 008137 502 SNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVP 542 (576)
Q Consensus 502 g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 542 (576)
|.++++.+.|.+.|..|++.+|.+.+++.++..++.++..+
T Consensus 364 g~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 364 GAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988888877766665554
No 78
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.94 E-value=1.7e-24 Score=231.68 Aligned_cols=376 Identities=11% Similarity=-0.002 Sum_probs=250.2
Q ss_pred HHHHHhhhhhhhhHHH-HHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-hHHHHHHHHHHHHHHH
Q 008137 35 GIGGLLFGYDTGVISG-ALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGR-KISLLGADVLFFIGAI 112 (576)
Q Consensus 35 ~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Gr-r~~~~~~~~~~~i~~~ 112 (576)
++..++.+.......+ +.+.+.+++|.+..+. |++.+++.++..++++++|+++||+|| |+++.++.++.+++..
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~i---Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~ 84 (418)
T TIGR00889 8 KFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEI---GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLF 84 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3444555666666644 4455667789998888 999999999999999999999999965 7888999999989999
Q ss_pred HHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhc--------cCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137 113 IMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEA--------SPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG 184 (576)
Q Consensus 113 ~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~--------~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~ 184 (576)
+..+.++++.+.+.|++.|++.+...+...+....+ .....|.+..| .+|.++++.+++.+....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~- 157 (418)
T TIGR00889 85 FAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIEL- 157 (418)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccc-
Confidence 999999999999999999998887777666553222 22223444444 468888888888774332
Q ss_pred hhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHH
Q 008137 185 TWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISR 264 (576)
Q Consensus 185 ~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (576)
.|+ +|++.+++.++.++..+.+||+|+... ++..+.++ ....+
T Consensus 158 ~~~-~f~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~----------------------------------~~~~~ 200 (418)
T TIGR00889 158 SNI-QLYITAGSSALLGVFALTLPDIPVAKS--TAKMSIKV----------------------------------MLGLD 200 (418)
T ss_pred hhH-HHHHHHHHHHHHHHHHhcCCCCCCCcc--ccccCHHH----------------------------------Hhhhh
Confidence 255 455666655555555667888753110 00000000 00011
Q ss_pred hhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCc-------hhHHHHHHHHHhHHHHHHHHHHHHhh
Q 008137 265 LKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFAS-------KSTALALSLVTSGLNALGSIVSMAFV 337 (576)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ig~~~~g~l~ 337 (576)
.++.++++.++...+..++. .........+.+.++++.+... ....+.......+..+++.++.++++
T Consensus 201 ~~~~~k~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~ 275 (418)
T TIGR00889 201 AFILFKNKRMAIFFFFSMLL-----GAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFL 275 (418)
T ss_pred HHHHhcCCCeeeHHHHHHHH-----HhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23345555443322221111 1122233345567777665422 24456777777888889999999999
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCC
Q 008137 338 DKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKG 417 (576)
Q Consensus 338 dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (576)
||+|||+++..+.++..++..++.......
T Consensus 276 dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~-------------------------------------------------- 305 (418)
T TIGR00889 276 KRFGIKKVMLLSLVAWALRFGFFAYGDPEY-------------------------------------------------- 305 (418)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHcCcch--------------------------------------------------
Confidence 999999999998888777765554421000
Q ss_pred CCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHH-
Q 008137 418 NEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAA- 496 (576)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~- 496 (576)
...+..++..++.+.+++ ...+....+++|.+|++.|+++.|+.+
T Consensus 306 ---------------------------------~~~~~l~l~~~l~g~~~~-~~~~~~~~~i~~~~p~~~~g~~~g~~~~ 351 (418)
T TIGR00889 306 ---------------------------------FGYALLFLSMIVYGCAFD-FFNISGSVFVEKEVPVHIRASAQGLFTL 351 (418)
T ss_pred ---------------------------------hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 000222223333333333 223444567899999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHhh------ccchhhHHHHHHHHHHHHHHHhhccCCCC
Q 008137 497 VSNWTSNLIVSLTFLTLTEAL------GSAGTFLLFAGFSLLGLVAIYLLVPETKG 546 (576)
Q Consensus 497 ~~~~~g~~~~~~~~~~l~~~~------g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 546 (576)
....+|.+++|.+.|.+.+.. ||+..|.+.+++.+++.++.+++.||+++
T Consensus 352 ~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 352 MCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 567899999999999999985 47778888888888888888888887644
No 79
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.94 E-value=1.6e-24 Score=260.11 Aligned_cols=374 Identities=12% Similarity=0.022 Sum_probs=249.0
Q ss_pred hhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH---Hhcch
Q 008137 43 YDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM---AIAPQ 119 (576)
Q Consensus 43 ~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~~~ 119 (576)
.+......+.+.+..+++.+... ...+++.+++.+++.++++++|+++||+|||++++++.++..++.++. ..+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~ 102 (1146)
T PRK08633 24 NDLGHKILIQNTLIKAYDGSEQV-ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGW 102 (1146)
T ss_pred HHHHHHHHHHHHHHHHcCcccHH-HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34444555566676777665443 345999999999999999999999999999999999887766555544 34578
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CchhHHHHH
Q 008137 120 PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKA--------PGTWRWMLG 191 (576)
Q Consensus 120 ~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~--------~~~Wr~~f~ 191 (576)
++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++|+++++++... .++|++.+.
T Consensus 103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~ 182 (1146)
T PRK08633 103 FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAG 182 (1146)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998765 233555555
Q ss_pred HhHHHH-HHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcc
Q 008137 192 VAGLPA-VVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFG 270 (576)
Q Consensus 192 v~~~~~-~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (576)
+.++.. ++.+++.+.+||+|+....+.+.+.. ...+.....++.+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~l~~ 230 (1146)
T PRK08633 183 LVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKY--------------------------------LFPKLLWRNLKLLRS 230 (1146)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCCCccccccccc--------------------------------ccHHHHHHHHHHHhc
Confidence 444333 33344455677776422111000000 000001123344455
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchh-HHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHH
Q 008137 271 NKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKS-TALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVS 349 (576)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~ 349 (576)
++.++.. .+..+..+........+.|.+++...+.+.. ..+++.....++.+++.++.+++.||+++++.+.++
T Consensus 231 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~ 305 (1146)
T PRK08633 231 DRVLWLA-----IIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLG 305 (1146)
T ss_pred CcHHHHH-----HHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHH
Confidence 5443332 2222222223344455667776655444555 778888888888999999999999999998888777
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccc
Q 008137 350 MFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDE 429 (576)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (576)
.++++++.+++.+...
T Consensus 306 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 321 (1146)
T PRK08633 306 ALGLALSLFLLPTAPS---------------------------------------------------------------- 321 (1146)
T ss_pred HHHHHHHHHHHHHhhh----------------------------------------------------------------
Confidence 7777666655544321
Q ss_pred cccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHH
Q 008137 430 KSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLT 509 (576)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~ 509 (576)
.+..++..++++++.+.. .+...++..+..|++.||+++|+.+++..++.++++.+
T Consensus 322 -----------------------~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~ 377 (1146)
T PRK08633 322 -----------------------LASVLVLFFLFGFSAGLF-IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLAL 377 (1146)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHh-hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHH
Confidence 123333334444433322 33455777899999999999999999999999888777
Q ss_pred HHHHHHh-hccchhhHHHHHHHHHHHHHHHhhcc
Q 008137 510 FLTLTEA-LGSAGTFLLFAGFSLLGLVAIYLLVP 542 (576)
Q Consensus 510 ~~~l~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~ 542 (576)
.+.+... .++...+++.+.+.++..+..+...|
T Consensus 378 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (1146)
T PRK08633 378 TTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLP 411 (1146)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6655432 23333455555544444444433333
No 80
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.94 E-value=1.5e-23 Score=223.26 Aligned_cols=370 Identities=14% Similarity=0.076 Sum_probs=250.2
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CchH-HHHHHHHHHHH
Q 008137 36 IGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF-----GRKI-SLLGADVLFFI 109 (576)
Q Consensus 36 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~-----Grr~-~~~~~~~~~~i 109 (576)
.-++.+++........+|.+.++-|.+.++. |++..+... .+..+++|+++||+ |||| .+.++.++.++
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~i---g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTVEGLDIQTI---GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence 4456678888899999999999999999998 888777665 58899999999999 8875 78888888888
Q ss_pred HHHHHHhc---chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 008137 110 GAIIMAIA---PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTW 186 (576)
Q Consensus 110 ~~~~~~~~---~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~W 186 (576)
+..+.++. .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+...+|
T Consensus 81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw 160 (402)
T PRK11902 81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGW 160 (402)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCH
Confidence 88888887 357888888888899999999999999999999999999999999999999999999999888754349
Q ss_pred HHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhh
Q 008137 187 RWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLK 266 (576)
Q Consensus 187 r~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (576)
|..|++.+++.++..+..+.+||+++... +.++.++ +..++++
T Consensus 161 ~~~f~i~a~~~l~~~l~~~~~~e~~~~~~---~~~~~~~----------------------------------~~~~~~~ 203 (402)
T PRK11902 161 GNTYLLMAGLMLAGALTTLWAPEPEVPAR---PPRSLGE----------------------------------AVVGPLR 203 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccc---ccchhHH----------------------------------HHHHHHH
Confidence 99999988877766555566777543110 0000000 0013344
Q ss_pred hhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHH-hHHHHHHHHHHHHhhcccCChHH
Q 008137 267 GAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVT-SGLNALGSIVSMAFVDKYGRRRL 345 (576)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ig~~~~g~l~dk~grr~~ 345 (576)
+.++++..+............ .........+.+.++.+. +....+.+.... .++.+++.++++++.||+++|+.
T Consensus 204 ~l~~~~~~~~~l~~~~l~~~~----~~~~~~~~~~~l~~~~G~-~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~ 278 (402)
T PRK11902 204 DFFSRRGAWALLLLIVLYKLG----DAFAGSLSTTFLIRGAGF-SAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRS 278 (402)
T ss_pred HHHhCcCHHHHHHHHHHHHhH----HHHHHHHHHHHHHHhcCC-CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 556666544422222221111 111112223444444555 666666665443 44578999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcc
Q 008137 346 MIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGAC 425 (576)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (576)
+..+..+..+..+.+.......
T Consensus 279 l~~~~~~~~l~~l~~~~~~~~~---------------------------------------------------------- 300 (402)
T PRK11902 279 LMLFGVLQAVSNLGYWVLAVTP---------------------------------------------------------- 300 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC----------------------------------------------------------
Confidence 7766665555544333221100
Q ss_pred cccccccccccccccccccccCCCCcchhHHHHHHHHHHHHh---cCCcccccchhccccccccccccchhHHHHHHHHH
Q 008137 426 LIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITY---SPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTS 502 (576)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g 502 (576)
+..+..+....+..+.. ..........++.+.+|.+. .++.+....++
T Consensus 301 -------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~ 351 (402)
T PRK11902 301 -------------------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVG 351 (402)
T ss_pred -------------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHH
Confidence 00122222222111111 11222344456666666544 45566666778
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHh
Q 008137 503 NLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYL 539 (576)
Q Consensus 503 ~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 539 (576)
..+++.+.|.+.|..|+...|.+.+.+++++.++.+.
T Consensus 352 ~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 352 RVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 7777778999999999998888888888887666544
No 81
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.94 E-value=3.8e-24 Score=226.18 Aligned_cols=357 Identities=13% Similarity=-0.035 Sum_probs=245.2
Q ss_pred HHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCch----HHHHHHHHHHHHHHHH
Q 008137 38 GLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRK----ISLLGADVLFFIGAII 113 (576)
Q Consensus 38 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr----~~~~~~~~~~~i~~~~ 113 (576)
.+........+.|.+|.+.++++.+..+. |++.+++.++..++++++|++.||+||| +.+.+...+. +...
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~i---G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~ 87 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETI---GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAF 87 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHH---HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHH
Confidence 34455667888999999999999998888 9999999999999999999999999994 3333222222 2233
Q ss_pred HHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHh
Q 008137 114 MAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVA 193 (576)
Q Consensus 114 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~ 193 (576)
...+++++.+++.|++.|++.+...+...+++.++ .++|+++.+......++|..+||++++.+.+..+ ||..|++.
T Consensus 88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~ 164 (382)
T PRK11128 88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWIL 164 (382)
T ss_pred HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHH
Confidence 44568899999999999999998999888887776 4568888899999999999999999999988877 99999988
Q ss_pred HHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccch
Q 008137 194 GLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKI 273 (576)
Q Consensus 194 ~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (576)
++..++..+..+..||.++. .+.++. .. +...+.++.++++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~----~~~~~~----------------------------~~------~~~~~~~~i~~~~~ 206 (382)
T PRK11128 165 TAGVASMLLGQLLRPTIMPQ----GESRQQ----------------------------ES------AGWPAWKALLKEPT 206 (382)
T ss_pred HHHHHHHHHHHHccCCCCCc----cccccc----------------------------cc------cccchHHHHHcChh
Confidence 76555544444444543210 000000 00 00023455566654
Q ss_pred hhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHH
Q 008137 274 VRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGL 353 (576)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~ 353 (576)
.+........ ..........+.|.|.++.+. +....+.+.....+..+++.++.+++.||+++|+.+..+.++.
T Consensus 207 ~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~ 280 (382)
T PRK11128 207 VWRFLLCVSL-----LQGSHAAYYGFSAIYWQAAGY-SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICG 280 (382)
T ss_pred HHHHHHHHHH-----HHHHhHhHHHHHHHHHHHCCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 4432221111 122233444556777777666 5666677777777888888999999999999999988888877
Q ss_pred HHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccc
Q 008137 354 SSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTD 433 (576)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (576)
.++.+++.....
T Consensus 281 ~~~~~~~~~~~~-------------------------------------------------------------------- 292 (382)
T PRK11128 281 VVRWGLMGSTTA-------------------------------------------------------------------- 292 (382)
T ss_pred HHHHHHHHhhhh--------------------------------------------------------------------
Confidence 777655543321
Q ss_pred cccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHH-HHHHHHHHHHHHHHHH
Q 008137 434 TLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAA-VSNWTSNLIVSLTFLT 512 (576)
Q Consensus 434 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~-~~~~~g~~~~~~~~~~ 512 (576)
.|..++..++.+++++.. .+....+..+. +++.+++..+..+ ....+|..++|.+.|.
T Consensus 293 -------------------~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~ 351 (382)
T PRK11128 293 -------------------LPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGF 351 (382)
T ss_pred -------------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133344444444444432 23334555665 4556688888876 4456677899999999
Q ss_pred HHHhhccchhhHHHHHHHHHHHHH
Q 008137 513 LTEALGSAGTFLLFAGFSLLGLVA 536 (576)
Q Consensus 513 l~~~~g~~~~~~~~~~~~~i~~~~ 536 (576)
+.|..|. ..++..++++++++++
T Consensus 352 l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 352 LYQHLGA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHhccH-HHHHHHHHHHHHHHHH
Confidence 9999887 4666666666655444
No 82
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.94 E-value=3.1e-24 Score=257.36 Aligned_cols=401 Identities=12% Similarity=0.002 Sum_probs=254.6
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHH-HHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHH---HHHH
Q 008137 31 ALSAGIGGLLFGYDTGVISGALL-YIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLG---ADVL 106 (576)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~---~~~~ 106 (576)
+....++.+.+++....+..+.. .+..+.+.+ ...+.++..+++.+++.++++++|+++||+|||+++.. ..++
T Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~ 94 (1140)
T PRK06814 17 FWTQFFGAFNDNFLKNALVILILYGLSGALGAY--NNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIG 94 (1140)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhccccccc--hHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHH
Confidence 33444555555555544443333 233333322 22334889999999999999999999999999997533 2233
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 008137 107 FFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTW 186 (576)
Q Consensus 107 ~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~W 186 (576)
..+..++....+++++++++|+++|++.+...|+..+++.+++|+++|++++++.+++.++|.++||++++++....+ |
T Consensus 95 ~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~ 173 (1140)
T PRK06814 95 IAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-F 173 (1140)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-c
Confidence 333333344458999999999999999999999999999999999999999999999999999999999999988776 9
Q ss_pred HHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhh
Q 008137 187 RWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLK 266 (576)
Q Consensus 187 r~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (576)
++.|++.++..++.+++.+.+|+++.... ..+.+.. . .++....++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~-------------------------------~~~~~~~~~ 219 (1140)
T PRK06814 174 VILVALLMGIAVLGWLASLFIPKTGNAAP-DLKIDRN--I-------------------------------IRSTITLLK 219 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCC-CCeeccc--h-------------------------------HHHHHHHHH
Confidence 99996666666666666666776542100 0000000 0 000012334
Q ss_pred hhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHH
Q 008137 267 GAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLM 346 (576)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~ 346 (576)
...+++.++. ..+..+..+.....+..+.|.|+++..+.+....+.+.....++.++|.++.|+++++..+++.+
T Consensus 220 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~ 294 (1140)
T PRK06814 220 YAKADKRIWL-----AILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYV 294 (1140)
T ss_pred HHhcCchHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeee
Confidence 4444444333 22222222333455566788888876565778888888999999999999999999888777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccc
Q 008137 347 IVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACL 426 (576)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (576)
..+.++..++.+.+.+............ ....++
T Consensus 295 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------------------------------~~~~~~-------------- 328 (1140)
T PRK06814 295 PIGALLMGLFGLDLAFASSSVPAEPAQL--------------------------------KSILVF-------------- 328 (1140)
T ss_pred hHHHHHHHHHHHHHHhcccccccccccc--------------------------------cchhhh--------------
Confidence 5555555544443332200000000000 000000
Q ss_pred ccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHH
Q 008137 427 IDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIV 506 (576)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~ 506 (576)
......|..++..++++++.+.. .+...++..+..|++.||+++|+.++...++..++
T Consensus 329 ---------------------~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig 386 (1140)
T PRK06814 329 ---------------------LSKRHGWRILIDLFGLAAAGGLY-IVPLFAALQAWANPAHRARVIAANNVLNAAFMVAG 386 (1140)
T ss_pred ---------------------hcccccHHHHHHHHHHHHHHHHh-HHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHH
Confidence 00011244444444444443322 33455788899999999999999999999999999
Q ss_pred HHHHHHHHHh-hccchhhHHHHHHHHHHHHHHHhhc
Q 008137 507 SLTFLTLTEA-LGSAGTFLLFAGFSLLGLVAIYLLV 541 (576)
Q Consensus 507 ~~~~~~l~~~-~g~~~~~~~~~~~~~i~~~~~~~~~ 541 (576)
+++.+.+.+. .++...+++.+++.++..+..+.+.
T Consensus 387 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (1140)
T PRK06814 387 TIILALLQALGFSIPWIILFIALANLIVAILILRLL 422 (1140)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999988753 3444445544444444433333333
No 83
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.93 E-value=1.7e-23 Score=222.17 Aligned_cols=373 Identities=12% Similarity=0.022 Sum_probs=246.2
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHH-HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008137 34 AGIGGLLFGYDTGVISGALLYIK-EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAI 112 (576)
Q Consensus 34 ~~l~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~ 112 (576)
+....++.......+.+.+|.+. +++|.+..+. |++.+++.++..++++++|+++||+|||+.++.+.+..+++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~ 83 (396)
T TIGR00882 7 FGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDT---GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA 83 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 33445566667777778887754 5689988888 9999999999999999999999999999999887776655443
Q ss_pred HH---Hhcc-----hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137 113 IM---AIAP-----QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG 184 (576)
Q Consensus 113 ~~---~~~~-----~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~ 184 (576)
.. .+.+ .+..+++.|++.|++.+...+....+..|.. +++++..+......++|..+++++++.+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-- 159 (396)
T TIGR00882 84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSI-- 159 (396)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhcc--
Confidence 22 2222 2344567789999988888888887777653 3345667788888899999999999988664
Q ss_pred hhHHHHHHhHHHHHHHHHHHhh-ccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHH
Q 008137 185 TWRWMLGVAGLPAVVQFGLMMM-LPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMIS 263 (576)
Q Consensus 185 ~Wr~~f~v~~~~~~~~~~~~~~-l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (576)
+||++|++.+++.++..+..+. .||+|+... + ++.. +.+.+ +...+
T Consensus 160 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~-------------------------~~~~~----~~~~~ 206 (396)
T TIGR00882 160 DPQIVFWLGSGFALILMLLLMFAKPKAPSSAT-V---ANAL-------------------------GANAS----AFSLK 206 (396)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCCchhhh-h---hccc-------------------------ccccC----CCCHH
Confidence 5999999998888776655444 344332100 0 0000 00000 00013
Q ss_pred HhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhc---CCchhHHHHHHHHHhHHHHHHHHHHHHhhccc
Q 008137 264 RLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAG---FASKSTALALSLVTSGLNALGSIVSMAFVDKY 340 (576)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~ 340 (576)
+.++.++++..+... ...+.....+.....+.+.|+++.. ..+....+.......+...++.+..+++.||+
T Consensus 207 ~~~~~l~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~ 281 (396)
T TIGR00882 207 LALELFRQRKFWMFV-----LYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI 281 (396)
T ss_pred HHHHHHcCCcHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566665443221 1111122223334344566665543 22344556666777777888899999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCC
Q 008137 341 GRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEY 420 (576)
Q Consensus 341 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (576)
+||+.+.++.++.++...++.....
T Consensus 282 g~~~~l~~~~~l~~l~~~~~~~~~~------------------------------------------------------- 306 (396)
T TIGR00882 282 GAKNALLIAGTIMSVRIIGSSFATT------------------------------------------------------- 306 (396)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCC-------------------------------------------------------
Confidence 9999988887776666554332210
Q ss_pred CCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhH-HHHHH
Q 008137 421 LPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGI-AAVSN 499 (576)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~-~~~~~ 499 (576)
.+..+....+.+.+.... ......+..+..|++.+++..+. .+...
T Consensus 307 --------------------------------~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~ 353 (396)
T TIGR00882 307 --------------------------------ALEVVILKMLHAFEVPFL-LVGCFKYITSQFDVRLSATIYLIGFQFAK 353 (396)
T ss_pred --------------------------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCcceEEEeehHHHHHHH
Confidence 133233333333332211 11223355677788888887776 57889
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHh
Q 008137 500 WTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYL 539 (576)
Q Consensus 500 ~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 539 (576)
.+|+++++.+.|.+.+..|+..+|.+.+++.++..++..+
T Consensus 354 ~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 354 QLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888877766544
No 84
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.93 E-value=7.3e-23 Score=222.25 Aligned_cols=168 Identities=21% Similarity=0.308 Sum_probs=138.9
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 008137 30 LALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFI 109 (576)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i 109 (576)
.+...++.....++.....+.+++.+.+|+|.++.. .|+.+...++.+++.++.|+++|.||||.+++++.++..+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~----~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vv 120 (599)
T PF06609_consen 45 SFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNW----SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVV 120 (599)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccc----hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHh
Confidence 333445555555666677788889999999987554 6788899999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Q 008137 110 GAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWM 189 (576)
Q Consensus 110 ~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~ 189 (576)
|+++++.++|...++++..+.|+|.|.... ....++|..|.|.|....++..........+++.++..+.... +|||.
T Consensus 121 G~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~-~WRw~ 198 (599)
T PF06609_consen 121 GSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHS-GWRWI 198 (599)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCC-CcchH
Confidence 999999999999999999999999887665 5566899999999988887777666555667788877766554 49999
Q ss_pred HHHhHHHHHHHHHH
Q 008137 190 LGVAGLPAVVQFGL 203 (576)
Q Consensus 190 f~v~~~~~~~~~~~ 203 (576)
|++.++...+.+++
T Consensus 199 ~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 199 FYIFIIWSGIALVL 212 (599)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998887776555
No 85
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.92 E-value=5.2e-23 Score=215.11 Aligned_cols=274 Identities=11% Similarity=0.054 Sum_probs=193.7
Q ss_pred hhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CchHH-HHHHHHHHHHHHHHHHhc
Q 008137 44 DTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF-----GRKIS-LLGADVLFFIGAIIMAIA 117 (576)
Q Consensus 44 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~-----Grr~~-~~~~~~~~~i~~~~~~~~ 117 (576)
....+++.+|.+.+|+|.+..+. |++.+. .+...+ .+++|++.||+ |||+. ++.+.++.+++....++.
T Consensus 3 ~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~ 77 (356)
T TIGR00901 3 PLGLVGNTLPYWLRSKNVSLKTI---GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL 77 (356)
T ss_pred CchhHHhHHHHHHHHcCCCHHHH---HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence 34567788999999999999888 888655 455555 89999999998 89886 567788888887777787
Q ss_pred ---chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------hhH
Q 008137 118 ---PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG-------TWR 187 (576)
Q Consensus 118 ---~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~-------~Wr 187 (576)
.+.+.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+....+ +||
T Consensus 78 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr 157 (356)
T TIGR00901 78 VPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWG 157 (356)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccH
Confidence 4667777888899999999999999999999999999999999999999999999999988876654 299
Q ss_pred HHHHHhHHHHHHHHHHHhh-ccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhh
Q 008137 188 WMLGVAGLPAVVQFGLMMM-LPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLK 266 (576)
Q Consensus 188 ~~f~v~~~~~~~~~~~~~~-l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (576)
+.|++.++..++.++..++ .||+++. +.+.++..+ +.....+
T Consensus 158 ~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~----------------------------------~~~~~~~ 200 (356)
T TIGR00901 158 YIFFWTALLILPGLLVTLFLAKEPQED---ASVPKPLTQ----------------------------------AVLKPIR 200 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcc---cccchhHHH----------------------------------HHHHHHH
Confidence 9999998887776655443 4664221 000000000 0002233
Q ss_pred hhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHH-hHHHHHHHHHHHHhhcccCChHH
Q 008137 267 GAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVT-SGLNALGSIVSMAFVDKYGRRRL 345 (576)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ig~~~~g~l~dk~grr~~ 345 (576)
+.++++..+. .+. .....+...........+.|.|+++.+. +..+.+.+.... .+..+++.++++++.||+|||+.
T Consensus 201 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~ 277 (356)
T TIGR00901 201 EFFQRKNMIQ-ALL-LLLLIVLYKLGDSAATVLTTLFLLDMGF-SKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYA 277 (356)
T ss_pred HHHHhcCchH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3444433222 122 2222222334445666777888887655 556666555443 35678999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008137 346 MIVSMFGLSSCLVALAV 362 (576)
Q Consensus 346 ~~~~~~~~~~~~~~~~~ 362 (576)
+..++++..+...++.+
T Consensus 278 l~~~~~~~~~~~~~~~~ 294 (356)
T TIGR00901 278 LLLFGIVQALTNAGFVW 294 (356)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88877776666554443
No 86
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.92 E-value=1.9e-22 Score=219.50 Aligned_cols=373 Identities=15% Similarity=0.120 Sum_probs=271.6
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008137 33 SAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAI 112 (576)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~ 112 (576)
.+.++.++..+...+....++-+..+...++... +++.++..+...+.++++|.++||+.||++++.+.++..+..+
T Consensus 14 ~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~v---alv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~ 90 (524)
T PF05977_consen 14 RLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMV---ALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVAL 90 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 3456666667777777777777777776666666 9999999999999999999999999999999999988876665
Q ss_pred HHHhc-----chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Q 008137 113 IMAIA-----PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWR 187 (576)
Q Consensus 113 ~~~~~-----~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr 187 (576)
+.++. .+++.+++.-++.|++.+...|.-.+++.|..|+++...+.++.+...++..++||.++|.+....| -.
T Consensus 91 ~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~~ 169 (524)
T PF05977_consen 91 LLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-AA 169 (524)
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HH
Confidence 54442 4789999999999999999999999999999999999999999999999999999999999887666 78
Q ss_pred HHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhh
Q 008137 188 WMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKG 267 (576)
Q Consensus 188 ~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (576)
+.|++.++..++.+.....++..++. ++...+. . .++....++-
T Consensus 170 ~~f~inalsfl~~i~~l~~~~~~~~~--~~~~~e~---~-------------------------------~~~l~~G~ry 213 (524)
T PF05977_consen 170 AAFLINALSFLISILALLRWKPPPPP--SSLPRER---F-------------------------------FSALREGLRY 213 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccc--cccchhh---h-------------------------------hhhHHHHHHH
Confidence 88988877655554444444332110 0000000 0 0001122233
Q ss_pred hcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHH
Q 008137 268 AFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMI 347 (576)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~ 347 (576)
..+++..+..++.... +.+ ........+|.+.++..+.+....+++....++++++|+++.+++.+|+++++++.
T Consensus 214 v~~~~~l~~~l~~~~~----~~l-~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~ 288 (524)
T PF05977_consen 214 VRSSPPLRSVLLRSFL----FNL-FASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVL 288 (524)
T ss_pred HhcchHHHHHHHHHHH----HHH-hhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhH
Confidence 3334433332221111 111 12333445788887766657888899999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccc
Q 008137 348 VSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLI 427 (576)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (576)
.+.++.+++.+.+++...
T Consensus 289 ~~~~~~a~~~~~lal~~~-------------------------------------------------------------- 306 (524)
T PF05977_consen 289 LASLLFALALLLLALSPS-------------------------------------------------------------- 306 (524)
T ss_pred HHHHHHHHHHHHHhcchH--------------------------------------------------------------
Confidence 888877777666655432
Q ss_pred cccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHH
Q 008137 428 DEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVS 507 (576)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~ 507 (576)
.|.....+++.+.+.... .....+...+..|++.||++++++.+....+..++.
T Consensus 307 -------------------------~~~~~~~l~l~G~~~~~~-~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGs 360 (524)
T PF05977_consen 307 -------------------------FWLALIALFLAGAAWIIA-NSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGS 360 (524)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHH
Confidence 144444444444444322 233446678889999999999999999999999999
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Q 008137 508 LTFLTLTEALGSAGTFLLFAGFSLLGLVAIY 538 (576)
Q Consensus 508 ~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~ 538 (576)
.+.|.+.+..|...++.+.++..+++.++.+
T Consensus 361 ll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 361 LLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888777766666555543
No 87
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.92 E-value=2e-24 Score=233.93 Aligned_cols=421 Identities=14% Similarity=0.111 Sum_probs=296.3
Q ss_pred hchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHH
Q 008137 22 WTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLL 101 (576)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~ 101 (576)
+...+-|.+++...+..+...--...++.+.+.++++|+.+.++. +|+.++......+..++.+.+.||||.|.+.+
T Consensus 39 PdGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~---~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i 115 (509)
T KOG2504|consen 39 PDGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQI---AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMI 115 (509)
T ss_pred CCCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHH---HHHHHHHHHHHHHhccHHHHHHhhcCchHHHH
Confidence 366788888888877777766666777889999999999998887 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHH-HHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008137 102 GADVLFFIGAIIMAIAPQPWVIILGR-IFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT 180 (576)
Q Consensus 102 ~~~~~~~i~~~~~~~~~~~~~l~~~R-~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~ 180 (576)
.|.++.++|.++.+|++++|++++.- ++.|+|.|+.+..+...+..|| +|+|+.|.|+...+.++|.++-|++...+.
T Consensus 116 ~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~ 194 (509)
T KOG2504|consen 116 AGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLL 194 (509)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence 99999999999999999999988766 9999999999999999999888 567999999999999999999999999999
Q ss_pred CCCchhHHHHHHhHHHHHHHHHHHhhc-cCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHH------HH-H--HHHhh
Q 008137 181 KAPGTWRWMLGVAGLPAVVQFGLMMML-PESPRWLYRQNKVDEARAILEKIYPADQVEEEVNL------LK-Q--SVENE 250 (576)
Q Consensus 181 ~~~~~Wr~~f~v~~~~~~~~~~~~~~l-~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~------~~-~--~~~~~ 250 (576)
+..| ||+.+++.+.+.+-.+..-..+ |.+++.... ..+..+.............+... .. . .....
T Consensus 195 ~~~G-~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (509)
T KOG2504|consen 195 SKYG-WRGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLAT 270 (509)
T ss_pred HHhC-cHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhccccccccccccccccccccCCCCCCcccccchhh
Confidence 9888 9999999888886666554433 433221111 00000000000000000000000 00 0 00000
Q ss_pred hhhhcccch-hhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHH
Q 008137 251 KAEEGLIGK-DMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALG 329 (576)
Q Consensus 251 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 329 (576)
....+...+ ...+.....+..+.++.+.++.+.....+...++.....++|.+....+. +...+..+....++..+++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~-~~~~aa~l~Siigi~~i~g 349 (509)
T KOG2504|consen 271 LKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGL-SSNDAAFLLSIIGVSDIIG 349 (509)
T ss_pred hhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ChhhhHHHHHHHHHhhhhh
Confidence 000000000 00011111223445555677778888888888889999999999997777 6677777778889999999
Q ss_pred HHHHHHhhcccCChH--HHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCccccccccc
Q 008137 330 SIVSMAFVDKYGRRR--LMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLK 407 (576)
Q Consensus 330 ~~~~g~l~dk~grr~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (576)
+++.|++.|+...++ +..++.++.+++.+.+.....
T Consensus 350 Ri~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~------------------------------------------ 387 (509)
T KOG2504|consen 350 RIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATT------------------------------------------ 387 (509)
T ss_pred hhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhcc------------------------------------------
Confidence 999999999988433 333444444444322222211
Q ss_pred ccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccc
Q 008137 408 AKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRY 487 (576)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 487 (576)
.+..+....+++...+ .........+.|+.+.+.
T Consensus 388 ---------------------------------------------~~~l~~~~~~fG~~~g-~~~~l~~~i~~~~~g~~~ 421 (509)
T KOG2504|consen 388 ---------------------------------------------YVGLIVFSILFGFCVG-SFSSLTPVILVDLVGLEK 421 (509)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcChhh
Confidence 0222222333322222 333344457789999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHh
Q 008137 488 RGVGGGIAAVSNWTSNLIVSLTFLTLTEALG-SAGTFLLFAGFSLLGLVAIYL 539 (576)
Q Consensus 488 rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~ 539 (576)
-..+.|+...+..++..++|++.|.+.|..| |...|+..+...+++.+..++
T Consensus 422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI 474 (509)
T ss_pred cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999887 777888888887777765433
No 88
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.92 E-value=9.6e-23 Score=218.93 Aligned_cols=346 Identities=14% Similarity=0.079 Sum_probs=232.7
Q ss_pred hhhhhhHHH-HHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc----cCch-HHHHHHHHHHHHHHHHHH
Q 008137 42 GYDTGVISG-ALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR----FGRK-ISLLGADVLFFIGAIIMA 115 (576)
Q Consensus 42 ~~~~~~~~~-~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr----~Grr-~~~~~~~~~~~i~~~~~~ 115 (576)
......+.+ +.+.+.+++|.+.... |++.++..+..++.+++.|+++|| +||| +.++++...++++.+++.
T Consensus 12 ~~~~~~~~~~l~~~~~~~~g~s~~~~---g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 12 NFIFAIVSTYLLFFYTDVLGLSAAFV---GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHH---HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 333344444 4455667889988888 999999999999999999999997 6874 567788888888888887
Q ss_pred hcch------HHHHHHHHHHHHhhhhhhhhhHHHHHHhcc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC------C
Q 008137 116 IAPQ------PWVIILGRIFVGLGVGMASMTAPLYISEAS-PAKIRGALVSANGFLITGGQFLAYLINLAFTK------A 182 (576)
Q Consensus 116 ~~~~------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~-~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~------~ 182 (576)
+.++ .+.+++.+++.+++.+...+...++..|.. ++++|+++.++.+.+..+|..++..+.+.+.. .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~ 168 (437)
T TIGR00792 89 TTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDD 168 (437)
T ss_pred hCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 7654 456778889999988887777788888887 57899999999998888888777665544432 1
Q ss_pred CchhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhh
Q 008137 183 PGTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDM 261 (576)
Q Consensus 183 ~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (576)
..+||+.+++.++++++..+. ++..+|+++.. +.+ ++ + ..+.
T Consensus 169 ~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~--~~~-~~-------------------------------~---~~~~ 211 (437)
T TIGR00792 169 KFGWFMFALVLALIGVVSLIICFFGTKERYSEI--PKN-IE-------------------------------K---KLSL 211 (437)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcCCEecCCCC--Ccc-cc-------------------------------c---CCCH
Confidence 125999999999888776655 45566654210 000 00 0 0011
Q ss_pred HHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccC
Q 008137 262 ISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYG 341 (576)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~g 341 (576)
.+..+..++++.++... ...+...........+.+++.+.... +....+.+.....++.+++.++.++++||+|
T Consensus 212 ~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g 285 (437)
T TIGR00792 212 KQIFKALFKNDQLLILC-----LAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFG 285 (437)
T ss_pred HHHHHHHhCCHHHHHHH-----HHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 13345556665544322 22222222333334445555554443 3445555566668888999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCC
Q 008137 342 RRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYL 421 (576)
Q Consensus 342 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (576)
+|+.+..+.++.+++.+.+.+...
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 309 (437)
T TIGR00792 286 RKILFAGGILLMVLGYLIFFFAGS-------------------------------------------------------- 309 (437)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcch--------------------------------------------------------
Confidence 999998887777766655443210
Q ss_pred CCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccc-------ccccccchhH
Q 008137 422 PGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYP-------LRYRGVGGGI 494 (576)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~rg~~~g~ 494 (576)
..+..++...+.+++.+. ..+..+++.+|..+ ++.+|...|+
T Consensus 310 ------------------------------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 358 (437)
T TIGR00792 310 ------------------------------NLPLILVLIILAGFGQNF-VTGLVWALVADTVDYGEWKTGVRAEGLVYSV 358 (437)
T ss_pred ------------------------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhcCccchHHHHHH
Confidence 012223333333333332 23455667777654 5667999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 008137 495 AAVSNWTSNLIVSLTFLTLTEALGSA 520 (576)
Q Consensus 495 ~~~~~~~g~~~~~~~~~~l~~~~g~~ 520 (576)
.+....+|..+++.+.|.+.+..|+.
T Consensus 359 ~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 359 RTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999887763
No 89
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.92 E-value=2.8e-22 Score=203.14 Aligned_cols=368 Identities=14% Similarity=0.071 Sum_probs=271.7
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 008137 30 LALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFI 109 (576)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i 109 (576)
....++...++.++......+++|.+++.|+.+..+. +++..+++.++.+.+++.|++.+|+|+|+.+++++.++++
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a---~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~av 90 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEA---SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAV 90 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHH---HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555667788889999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHH---hcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC----
Q 008137 110 GAIIMA---IAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKA---- 182 (576)
Q Consensus 110 ~~~~~~---~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~---- 182 (576)
++.+.. ...++..++++-|+.|.|.+.....+..+++...++++..+.+++.+...++|.+++|++++.+...
T Consensus 91 g~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~ 170 (422)
T COG0738 91 GAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVAL 170 (422)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhh
Confidence 999884 5678999999999999999999999999999999998889999999999999999999999988762
Q ss_pred --------------CchhHHHHHHhHHHHHHHHHHHhh--ccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHH
Q 008137 183 --------------PGTWRWMLGVAGLPAVVQFGLMMM--LPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQS 246 (576)
Q Consensus 183 --------------~~~Wr~~f~v~~~~~~~~~~~~~~--l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~ 246 (576)
...||++|...+...++..+.... .|+.+....++.+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~~------------------------ 226 (422)
T COG0738 171 TMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASGS------------------------ 226 (422)
T ss_pred ccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccccccc------------------------
Confidence 124888888877776666655444 3443211000000000
Q ss_pred HHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHH
Q 008137 247 VENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLN 326 (576)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (576)
....+.++++..+...+..++ ....-.....|++.|+.+..+.+..++........++.
T Consensus 227 ----------------~~~~~l~~~~~~~~gvl~~Fl-----YVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~ 285 (422)
T COG0738 227 ----------------AGLSSLFQNKHLRLGVLAIFL-----YVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGF 285 (422)
T ss_pred ----------------chHHHHHhChHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 124455666655543333222 22234455667788888866668888888889999999
Q ss_pred HHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccc
Q 008137 327 ALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCL 406 (576)
Q Consensus 327 ~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (576)
++|++++.++..|+...|.+....++..+.++...+...
T Consensus 286 ~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g----------------------------------------- 324 (422)
T COG0738 286 MVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGG----------------------------------------- 324 (422)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcC-----------------------------------------
Confidence 999999999999999888877666554444444443311
Q ss_pred cccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccccc
Q 008137 407 KAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLR 486 (576)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 486 (576)
...+....+.+.+. ..+.|..++...+..| +
T Consensus 325 -----------------------------------------------~v~~~~l~~ig~F~-simfPTIfslal~~l~-~ 355 (422)
T COG0738 325 -----------------------------------------------VVALYALFLIGLFN-SIMFPTIFSLALKNLG-E 355 (422)
T ss_pred -----------------------------------------------hHHHHHHHHHHHHh-HHHHHHHHHHHHhccC-c
Confidence 22233333333333 3556777788888888 4
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Q 008137 487 YRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVA 536 (576)
Q Consensus 487 ~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~ 536 (576)
....+.+ .....-+|+++.|.+.|++.|..|....+.....+|.+-.++
T Consensus 356 ~ts~~s~-~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~~ 404 (422)
T COG0738 356 HTSVGSG-LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLF 404 (422)
T ss_pred cccccce-eeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4444444 344577889999999999999999887776555555554433
No 90
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.92 E-value=8.8e-23 Score=213.59 Aligned_cols=293 Identities=14% Similarity=0.051 Sum_probs=199.2
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhccchhh-hHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008137 33 SAGIGGLLFGYDTGVISGALLYIKEDFRDVEKK-TWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA 111 (576)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~ 111 (576)
.+|+-.|+.. -+...+.+.|.+.+++|+++.+ . |.+.++++.++++++++.|+++||+|.|+++.++.+.+++.+
T Consensus 31 ~lC~fGF~~e-~R~n~s~a~p~L~~elglT~~qv~---G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t 106 (511)
T TIGR00806 31 YLCFYGFMAQ-FRPGESFITPYLLTVLNFTEETVT---NEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVW 106 (511)
T ss_pred HHHHHHHHHH-hhchHHHHHHHHHHHcCCCHHHhc---chHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 3455444443 3566778889999999999998 6 999999999999999999999999999999999999999999
Q ss_pred HHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 008137 112 IIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLG 191 (576)
Q Consensus 112 ~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~ 191 (576)
+++++++++..+.+.|++.|++.|+.+ ....++..|+|+++|+++.++...+..+|.++++++++++. ..+ ||+.+.
T Consensus 107 ~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~g-Wr~y~~ 183 (511)
T TIGR00806 107 LLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLG-WISYST 183 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-chhHHH
Confidence 999999999999999999999999999 99999999999999999999999999999999999999954 444 998665
Q ss_pred HhH---HHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhh
Q 008137 192 VAG---LPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGA 268 (576)
Q Consensus 192 v~~---~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (576)
+.. ....+.++..+++|..++.+.-+++.+.......+.......+. .......+.......+.++.++++.
T Consensus 184 Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~ 258 (511)
T TIGR00806 184 LNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPG-----GKLEDYLGTCRDSFLVRMLSELVTI 258 (511)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCc-----cccchhhhhhhhHHHHHHHHHHHHH
Confidence 532 22333445566788555533322211000000000000000000 0000000000011123445667777
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCC
Q 008137 269 FGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGR 342 (576)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~gr 342 (576)
.+++...+..++..+ ...++..+..|...+.++.....+..-|..-.+..+.+.++++..|++-.+..+
T Consensus 259 y~n~~vl~WSlWwa~-----a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~ 327 (511)
T TIGR00806 259 YRNPQLLLWSLWWVF-----NSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWAR 327 (511)
T ss_pred hcCcchhhhhHHHHH-----HhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence 777766554444333 333456666666666655533222244455566666778888889988655533
No 91
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.92 E-value=3.4e-22 Score=217.07 Aligned_cols=417 Identities=13% Similarity=0.075 Sum_probs=258.4
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHh---hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCchHHHHHHHHHH
Q 008137 32 LSAGIGGLLFGYDTGVISGALLYIKED---FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR-FGRKISLLGADVLF 107 (576)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~ 107 (576)
..+.+..+.+.+..+...+.+|.+.++ +|.+..+. +++.+.+.++..++++++|+++|| +|||++++++.+++
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~a---g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~ 89 (475)
T TIGR00924 13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQA---FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL 89 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence 344456666777777777778877554 88888888 999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcch---hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137 108 FIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKI---RGALVSANGFLITGGQFLAYLINLAFTKAPG 184 (576)
Q Consensus 108 ~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~---R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~ 184 (576)
+++.++.+++++++.+.++|++.|+|.|...+...++++|++|+++ |+.+.++++.+.++|.++|+++++++.+..+
T Consensus 90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g 169 (475)
T TIGR00924 90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG 169 (475)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998764 8889999999999999999999999988776
Q ss_pred hhHHHHHHhHHHHHHHHHHHhhcc----CChhHHhhcCCHHHHHHHHHH---------------hCCchhhhHHHHH---
Q 008137 185 TWRWMLGVAGLPAVVQFGLMMMLP----ESPRWLYRQNKVDEARAILEK---------------IYPADQVEEEVNL--- 242 (576)
Q Consensus 185 ~Wr~~f~v~~~~~~~~~~~~~~l~----esp~~l~~~~~~~~~~~~l~~---------------i~~~~~~~~~~~~--- 242 (576)
||+.|++.++..++..+.+++.+ +.|+.. .+.+.++....... .............
T Consensus 170 -~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (475)
T TIGR00924 170 -YHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVP-DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVT 247 (475)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHcccccccCCCCC-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999998765555444443333 222100 00000000000000 0000000000000
Q ss_pred HHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCc----hhHHHHH
Q 008137 243 LKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFAS----KSTALAL 318 (576)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 318 (576)
............. ++..+. .+.+...+..+.......+..+.......+.+.++....+ ....+.+
T Consensus 248 ~~~~~~~~~~~~~-------~~~~~~---~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~ 317 (475)
T TIGR00924 248 LAVIIFFFRLAFK-------PRLDAV---ARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWF 317 (475)
T ss_pred HHHHHHHHHHHHh-------ccCCHH---HHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHH
Confidence 0000000000000 000000 0011112222333333334444444444555544421111 1113344
Q ss_pred HHHHhHHHHHHHHHHH----Hhhcc-cCChHHH--HHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcc
Q 008137 319 SLVTSGLNALGSIVSM----AFVDK-YGRRRLM--IVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAY 391 (576)
Q Consensus 319 ~~~~~~~~~ig~~~~g----~l~dk-~grr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (576)
.....+..++..++.. ++.|| .+.+... .+|+++.+++++.+.+.......+
T Consensus 318 ~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~--------------------- 376 (475)
T TIGR00924 318 QSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAG--------------------- 376 (475)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC---------------------
Confidence 4444444445544433 33443 2223333 677888888877766542110000
Q ss_pred cccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCc
Q 008137 392 ITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGM 471 (576)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 471 (576)
-....|+.+....+...+- ...
T Consensus 377 ---------------------------------------------------------~~~s~~~~i~~~~~~~~ge-~~~ 398 (475)
T TIGR00924 377 ---------------------------------------------------------GLTSPWFMVLIYLFQTLGE-LMI 398 (475)
T ss_pred ---------------------------------------------------------CccCHHHHHHHHHHHHHHH-HHH
Confidence 0011244444444444443 345
Q ss_pred ccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhcc
Q 008137 472 GTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVP 542 (576)
Q Consensus 472 ~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 542 (576)
.|....+..+..|++.||+.+|+......+|..+++.+.....+..++...|...++++++..++.++..|
T Consensus 399 ~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 399 SPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888999999999999999999999999999988887777667777777777777777666655444
No 92
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.91 E-value=1.4e-21 Score=212.67 Aligned_cols=174 Identities=12% Similarity=0.145 Sum_probs=140.9
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHH-HHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCchHHHHHHHHHHH
Q 008137 31 ALSAGIGGLLFGYDTGVISGALL-YIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR-FGRKISLLGADVLFF 108 (576)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~~ 108 (576)
+..+++..+...+......+.++ ++.+++|.+..+. +++.+.+.....+..+++|+++|| +|||++++++.++++
T Consensus 16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a---~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~ 92 (489)
T PRK10207 16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQA---FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA 92 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence 33444444555555555554444 4567899888887 889999998888889999999999 999999999999999
Q ss_pred HHHHHHHhcchHHH-HHHHHHHHHhhhhhhhhhHHHHHHhccCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 008137 109 IGAIIMAIAPQPWV-IILGRIFVGLGVGMASMTAPLYISEASPAK--IRGALVSANGFLITGGQFLAYLINLAFTKAPGT 185 (576)
Q Consensus 109 i~~~~~~~~~~~~~-l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~--~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~ 185 (576)
+++++++++++... ++++|+++|+|.|...+...++++|.+|++ +|++++++++.+.++|.++||.+++++.+..+
T Consensus 93 ~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g- 171 (489)
T PRK10207 93 IGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG- 171 (489)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC-
Confidence 99999999877554 558999999999999999999999999877 45778999999999999999999999999887
Q ss_pred hHHHHHHhHHHHHHHHHHHhhcc
Q 008137 186 WRWMLGVAGLPAVVQFGLMMMLP 208 (576)
Q Consensus 186 Wr~~f~v~~~~~~~~~~~~~~l~ 208 (576)
||+.|++.++..++.++.+...+
T Consensus 172 w~~~F~i~~i~~~~~~~~~~~~~ 194 (489)
T PRK10207 172 YSVTYNLCGAGLIIALLVYFACR 194 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999997553333333333333
No 93
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.91 E-value=4.9e-23 Score=205.95 Aligned_cols=165 Identities=18% Similarity=0.201 Sum_probs=130.1
Q ss_pred hhHHHHHHHHHHhhc----cch-hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchH
Q 008137 46 GVISGALLYIKEDFR----DVE-KKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP 120 (576)
Q Consensus 46 ~~~~~~~~~i~~~~~----~~~-~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~ 120 (576)
+..-+....+.++|+ .++ ......|.+.+.|.+++.+.++.+|.++||+|||+++++++...++...+.+++.|+
T Consensus 42 ~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F 121 (451)
T KOG2615|consen 42 SSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF 121 (451)
T ss_pred cchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445556665 222 133456999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC---CchhHH--HHHHhHH
Q 008137 121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKA---PGTWRW--MLGVAGL 195 (576)
Q Consensus 121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~---~~~Wr~--~f~v~~~ 195 (576)
..+.+.|++.|+.-| +...+.++++|.+++|+|+++++.++...++|.++||.+++++.++ .+.... +-++..+
T Consensus 122 ~afv~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i 200 (451)
T KOG2615|consen 122 AAFVLARFLGGIFKG-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFI 200 (451)
T ss_pred HHHHHHHHhhhhccC-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHH
Confidence 777777999999887 6788999999999999999999999999999999999999999882 221211 1233333
Q ss_pred HHHH-HHHHHhhccCCh
Q 008137 196 PAVV-QFGLMMMLPESP 211 (576)
Q Consensus 196 ~~~~-~~~~~~~l~esp 211 (576)
++.. .....+++||+-
T Consensus 201 ~a~~~v~~~~~~lpETL 217 (451)
T KOG2615|consen 201 LAAGDVTFFPWFLPETL 217 (451)
T ss_pred HHHHHHHHHHHhCCccc
Confidence 3333 334466789984
No 94
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.5e-24 Score=216.31 Aligned_cols=382 Identities=14% Similarity=0.069 Sum_probs=270.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc--------------------------------------------
Q 008137 26 YIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRD-------------------------------------------- 61 (576)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~-------------------------------------------- 61 (576)
.|..++..++++-+.+.+....+.|.+|....|.+-
T Consensus 18 ~r~lilviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~ 97 (464)
T KOG3764|consen 18 SRPLILVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAE 97 (464)
T ss_pred ccceEEEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchh
Confidence 344555666777788888888888888887766551
Q ss_pred ---chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhh
Q 008137 62 ---VEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMAS 138 (576)
Q Consensus 62 ---~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~ 138 (576)
.+.+..++|++.+...+.+.+.+++.|.+.||+|+|..+++|+.++..++++.++.++++++++.|.+||+|.+...
T Consensus 98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 11223345999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhccCcch-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhc
Q 008137 139 MTAPLYISEASPAKI-RGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQ 217 (576)
Q Consensus 139 ~~~~~~i~e~~~~~~-R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~ 217 (576)
....+++++.+|+++ |++++|+.-.+.++|.++||+++|.+.+..| .+.+|++.+++.++...+.+++-|..+ .+
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p~~---~~ 253 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEPTE---MD 253 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCccc---cC
Confidence 999999999998764 7999999999999999999999999999988 999999999999998888555433211 00
Q ss_pred CCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHH
Q 008137 218 NKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVM 297 (576)
Q Consensus 218 ~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (576)
.+ + .++ ..+.+++++++.. +...........+....-
T Consensus 254 ~~--~----------------------------~~~--------~~~~~~Ll~dP~I-----~~~agai~~~n~~lafLe 290 (464)
T KOG3764|consen 254 PD--S----------------------------TEQ--------GTPMWSLLMDPYI-----LLIAGAITFSNSSLAFLE 290 (464)
T ss_pred cc--c----------------------------ccc--------CccHHHHHhCchH-----hhhhcchhhccchHHHhC
Confidence 00 0 000 0334455555533 223333333333334444
Q ss_pred hhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccC--ChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 008137 298 YYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYG--RRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVS 375 (576)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (576)
-.++.++.+....+.-..+.......+...++..+.|.+.||++ |......+.+....+.....+......
T Consensus 291 Ptlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~------- 363 (464)
T KOG3764|consen 291 PTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQ------- 363 (464)
T ss_pred cccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHH-------
Confidence 44455555555545557777778888889999999999999999 433333333333333222222211100
Q ss_pred ccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhH
Q 008137 376 QIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWL 455 (576)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 455 (576)
-|.
T Consensus 364 -----------------------------------------------------------------------------L~v 366 (464)
T KOG3764|consen 364 -----------------------------------------------------------------------------LWV 366 (464)
T ss_pred -----------------------------------------------------------------------------Hhh
Confidence 122
Q ss_pred HHHHHHHHHHHhcCCcccccchhcccccccc---ccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH
Q 008137 456 AVVFLGAYIITYSPGMGTAPWIVNSEIYPLR---YRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLL 532 (576)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i 532 (576)
....+++.+......+.|.. .++.|.-..+ .-|.+.++......+|.+++|.+.|.+.+..|+.+...+.++..++
T Consensus 367 p~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~i 445 (464)
T KOG3764|consen 367 PNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLI 445 (464)
T ss_pred hhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHH
Confidence 23333333333333333333 2333433333 6689999999999999999999999999999999988888888877
Q ss_pred HHHHHHh
Q 008137 533 GLVAIYL 539 (576)
Q Consensus 533 ~~~~~~~ 539 (576)
-.-++.+
T Consensus 446 yapvl~l 452 (464)
T KOG3764|consen 446 YAPVLLL 452 (464)
T ss_pred HHHHHHH
Confidence 5554433
No 95
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.91 E-value=5.7e-21 Score=202.43 Aligned_cols=374 Identities=14% Similarity=-0.018 Sum_probs=243.4
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHH--HHHHHHHHHHHHHHHH-HhhhccCchHHHHHHHHHH
Q 008137 31 ALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELI--VSMAVAGAIFGAGFGG-WINDRFGRKISLLGADVLF 107 (576)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i--~s~~~~~~~i~~~~~G-~l~dr~Grr~~~~~~~~~~ 107 (576)
...++..++.+++......+.+|.+.++.|.+..+. |++ .+...+...+.+++.+ +..||+||||..++...+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~i---Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~ 79 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTAL---AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCL 79 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHH
Confidence 445566678899999999999999999999988888 886 4666888888888884 4799999998876555332
Q ss_pred -HHHHHHHH---hcch-HHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008137 108 -FIGAIIMA---IAPQ-PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKA 182 (576)
Q Consensus 108 -~i~~~~~~---~~~~-~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~ 182 (576)
++.....+ ...+ ..+++..-++.++..+...+....+..|+.++++++.+.+....+..+|.++|..+.+++.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~ 159 (390)
T TIGR02718 80 VSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK 159 (390)
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 2222 334455556666777777888888889999999889998999888899999999888888887
Q ss_pred CchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhH
Q 008137 183 PGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMI 262 (576)
Q Consensus 183 ~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (576)
.+ ||..|++.+++.++..+..++++|+++. ++++.+. ..
T Consensus 160 ~g-w~~~f~~~a~l~~~~~~~~~~~~~~~~~--~~~~~~~--------------------------------------~~ 198 (390)
T TIGR02718 160 FG-QRPAFLLVACVPLASLVCVLWLKDRAVA--SPEAPLA--------------------------------------RR 198 (390)
T ss_pred hC-HHHHHHHHHHHHHHHHHHHHHcCCCCcC--ccccchh--------------------------------------hH
Confidence 77 9999999998887766665555443210 0000000 00
Q ss_pred HHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHh-HHHHHHHHHHHHhhcccC
Q 008137 263 SRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTS-GLNALGSIVSMAFVDKYG 341 (576)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ig~~~~g~l~dk~g 341 (576)
.+.++.++++..+.... ..+...........+.+.|+++.+. +.++.+.+..... ...+++.++.|++.||+|
T Consensus 199 ~~~~~~l~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~l~~~G~-s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g 272 (390)
T TIGR02718 199 ASLFRFFRRPLAWSLLA-----LALLSAMTAVSGFGLSKLYLVDAGW-PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAG 272 (390)
T ss_pred HHHHHHHcCcCHHHHHH-----HHHHHHHHHHHHHHHhhHHHHhcCC-CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 22344555554333211 1112222234444466777777766 6667776665554 456778899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCC
Q 008137 342 RRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYL 421 (576)
Q Consensus 342 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (576)
+|+.+..+..+.++..+........ .. .
T Consensus 273 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~-~-------------------------------------------------- 300 (390)
T TIGR02718 273 LWRTFILGVGLAGSLALLWFAQAAF-WL-A-------------------------------------------------- 300 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-cc-C--------------------------------------------------
Confidence 9998887666553332222211110 00 0
Q ss_pred CCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccc-cccccchhHHHHHHH
Q 008137 422 PGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPL-RYRGVGGGIAAVSNW 500 (576)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~rg~~~g~~~~~~~ 500 (576)
|. .+.......+..+..+... +.......+..++ +.+|+.+++.+....
T Consensus 301 ---------------------------~~--~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 350 (390)
T TIGR02718 301 ---------------------------PG--IAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVTAVQSTRD 350 (390)
T ss_pred ---------------------------Cc--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 00 1111111111111122111 2233343444554 889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Q 008137 501 TSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVA 536 (576)
Q Consensus 501 ~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~ 536 (576)
+|..++|.+.|.+.|..|+...|...+++.+++.+.
T Consensus 351 lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 351 LGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888877777766544
No 96
>PTZ00207 hypothetical protein; Provisional
Probab=99.90 E-value=4e-21 Score=209.99 Aligned_cols=176 Identities=13% Similarity=0.071 Sum_probs=140.5
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHH
Q 008137 24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGA 103 (576)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~ 103 (576)
.++||..+..........+ ....++...|.+.+++|.+..+. +++.++. .....++++.|++.||+|||++++++
T Consensus 23 e~~Rw~~lva~~~~~~~~g-~~y~fsv~s~~L~~~lgls~~~l---~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig 97 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTS-FMYAFNLISGAMQARYNLTQRDL---STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLS 97 (591)
T ss_pred ccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcCHHHH---HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 3566665555444444333 33566677889999999998887 7777764 34556788899999999999999999
Q ss_pred HHHHHHHHHHHHhc------chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHH-HHHHH
Q 008137 104 DVLFFIGAIIMAIA------PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFL-AYLIN 176 (576)
Q Consensus 104 ~~~~~i~~~~~~~~------~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l-~~~l~ 176 (576)
.+++++++++++++ ++++.++++|++.|+|.+...+.+...+.+|+| ++||+++|+...+.++|..+ +++..
T Consensus 98 ~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~ 176 (591)
T PTZ00207 98 MTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQL 176 (591)
T ss_pred HHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997 689999999999999999999999999999996 78999999999999999976 55555
Q ss_pred HHhcCCCchhHHHHHHhHHHHHHHHHH-Hhhcc
Q 008137 177 LAFTKAPGTWRWMLGVAGLPAVVQFGL-MMMLP 208 (576)
Q Consensus 177 ~~l~~~~~~Wr~~f~v~~~~~~~~~~~-~~~l~ 208 (576)
+++.+ +|++.|++.+++.++..++ +++++
T Consensus 177 ~l~~~---~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 177 AFFSD---NTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred HHHHH---hHHHHHHHHHHHHHHHHHHHHhhee
Confidence 54442 5999888888887776555 34443
No 97
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.1e-20 Score=185.72 Aligned_cols=370 Identities=18% Similarity=0.148 Sum_probs=277.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 008137 28 MKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLF 107 (576)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~ 107 (576)
+..+..+.+..+----....++|+++.+.+|++.+.+.. |+++++..+...+.+++..+++.|+|.++.+.+++++.
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~a---GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli 87 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVA---GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLI 87 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHH
Confidence 444444444444455567889999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Q 008137 108 FIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWR 187 (576)
Q Consensus 108 ~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr 187 (576)
.++.++-... +.+.++.+-.+.|.|.+...+..+..+.+.||++ -+..++++.+...+|..+++.+...+.+..++||
T Consensus 88 ~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~ 165 (395)
T COG2807 88 AAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWR 165 (395)
T ss_pred HHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHH
Confidence 9999999887 7888899999999999999999999999999754 7999999999999999999999998888876699
Q ss_pred HHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhh
Q 008137 188 WMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKG 267 (576)
Q Consensus 188 ~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (576)
.....-+.++++.++.|+.-...++. .+.+. . ..+..+
T Consensus 166 ~aL~~WAl~allAl~~WlPq~~r~~~-~~~~~---------------------------------~--------~~~~~~ 203 (395)
T COG2807 166 GALGFWALLALLALLIWLPQALREQA-ASIAT---------------------------------K--------LVSVRK 203 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccc-ccccc---------------------------------c--------cccccc
Confidence 99999999999888877543211100 00000 0 011122
Q ss_pred hcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhccc-CChHHH
Q 008137 268 AFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKY-GRRRLM 346 (576)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~-grr~~~ 346 (576)
++ +.+.-+.+.+.+..|...++....|.|.++.+.|. +..+++.+.....+.+++.++....+.+|. ++|+..
T Consensus 204 vw-----~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~-sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~ 277 (395)
T COG2807 204 VW-----RSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGL-SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLV 277 (395)
T ss_pred cc-----cCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCC-CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 33 33445557777888888899999999999999998 777888888888999999999999999865 566766
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccc
Q 008137 347 IVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACL 426 (576)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (576)
.....++.++++.+.+....
T Consensus 278 ~~~~~~~l~G~~G~~~~P~~------------------------------------------------------------ 297 (395)
T COG2807 278 VLALLLMLVGLVGLLLAPGQ------------------------------------------------------------ 297 (395)
T ss_pred HHHHHHHHHHHHHHHHhhhh------------------------------------------------------------
Confidence 66777777777666544221
Q ss_pred ccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccc-cccccccccchhHHHHHHHHHHHH
Q 008137 427 IDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSE-IYPLRYRGVGGGIAAVSNWTSNLI 505 (576)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~p~~~rg~~~g~~~~~~~~g~~~ 505 (576)
..++. ..+++.+.+ +..+...+++.+ .-.++..+..+|+.+..+++-...
T Consensus 298 -------------------------~~~lw---~~llG~G~G-~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~ 348 (395)
T COG2807 298 -------------------------LPILW---ALLLGLGQG-GAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAF 348 (395)
T ss_pred -------------------------HHHHH---HHHHhCccc-hHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhh
Confidence 11222 122222222 223333344333 334566788899999999999999
Q ss_pred HHHHHHHHHHhhccch-hhHHHHHHHHHHHHHHHh
Q 008137 506 VSLTFLTLTEALGSAG-TFLLFAGFSLLGLVAIYL 539 (576)
Q Consensus 506 ~~~~~~~l~~~~g~~~-~~~~~~~~~~i~~~~~~~ 539 (576)
+|.++|++.|..|... .........++..+..+.
T Consensus 349 GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 349 GPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred hhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999987543 444444444444444433
No 98
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.88 E-value=2.5e-19 Score=192.06 Aligned_cols=408 Identities=15% Similarity=0.137 Sum_probs=266.3
Q ss_pred HhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----ccCchHHHHHH-HHHHHHHHHH
Q 008137 39 LLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWIND----RFGRKISLLGA-DVLFFIGAII 113 (576)
Q Consensus 39 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~d----r~Grr~~~~~~-~~~~~i~~~~ 113 (576)
+-..+......+.++.+.++++.+.... +++..+..+...+.+++.|+++| |+|||+.++++ .....++.++
T Consensus 14 ~Giq~~~~l~~~~l~~yl~~lg~~~~~~---~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~l 90 (477)
T TIGR01301 14 AGVQFGWALQLSLLTPYVQELGIPHAWA---SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVIL 90 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 3345566677777888889999988777 99999999999999999999999 59999988875 6666667777
Q ss_pred HHhcchHH-----------------HHHHHHHHHHhhhhhhhhhHHHHHHhccCcchh--hHHHHHHHHHHHHHHHHHHH
Q 008137 114 MAIAPQPW-----------------VIILGRIFVGLGVGMASMTAPLYISEASPAKIR--GALVSANGFLITGGQFLAYL 174 (576)
Q Consensus 114 ~~~~~~~~-----------------~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R--~~~~~~~~~~~~~G~~l~~~ 174 (576)
.+++++.+ .++++-.+..++.....+...++++|.+|+++| +.+.++.+...++|.++|+.
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~ 170 (477)
T TIGR01301 91 IGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYA 170 (477)
T ss_pred HHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776643 223333344557888888899999999998865 68999999999999999999
Q ss_pred HHHHhc--CCC------------chhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHH
Q 008137 175 INLAFT--KAP------------GTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEE 239 (576)
Q Consensus 175 l~~~l~--~~~------------~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~ 239 (576)
+++... +.. .+.|+.|++.+++.++..+. .+..+|.|....+..+.++ ....+
T Consensus 171 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~-------~~~~~----- 238 (477)
T TIGR01301 171 AGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE-------AAPPS----- 238 (477)
T ss_pred HHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh-------ccccc-----
Confidence 998751 110 14789999988877776666 5667886531110000000 00000
Q ss_pred HHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHh-hcCCch------
Q 008137 240 VNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQF-AGFASK------ 312 (576)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------ 312 (576)
+... . ..++++++.-....+.+..++..-++.+.++..+..|.+.++.+ +...++
T Consensus 239 -----------~~~~----~---~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y 300 (477)
T TIGR01301 239 -----------KHGE----E---AFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKY 300 (477)
T ss_pred -----------ccch----h---hhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHH
Confidence 0000 0 11222222222223344456666666777788888777777653 222111
Q ss_pred hH----HHHHHHHHhHHHHHHHHHHHHhhcccCC-hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCC
Q 008137 313 ST----ALALSLVTSGLNALGSIVSMAFVDKYGR-RRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNT 387 (576)
Q Consensus 313 ~~----~~~~~~~~~~~~~ig~~~~g~l~dk~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (576)
++ ..+......+...+.+++..++.+|+|+ |++...+.++.+++++...+......+.. .
T Consensus 301 ~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~-~-------------- 365 (477)
T TIGR01301 301 DDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSR-Y-------------- 365 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccc-c--------------
Confidence 11 1222234444445666777888999985 67778888888888887766543110000 0
Q ss_pred CCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHh
Q 008137 388 CPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITY 467 (576)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 467 (576)
.|+-.+. .+++....+..++.+...++.+
T Consensus 366 -----~~~~~~~----------------------------------------------~~~~~~~~~~~l~~~~~~Gi~~ 394 (477)
T TIGR01301 366 -----YDGDGES----------------------------------------------LPPPTGIKASALIVFAILGIPL 394 (477)
T ss_pred -----ccccccc----------------------------------------------cCcchhhHHHHHHHHHHhhHHH
Confidence 0000000 0111111245555556666655
Q ss_pred cCCcccccchhccccccc--cccccchhHHHHHHHHHHHHHHHHHHHHHHhhcc--chhhHHHHHHHHHHHHHHHhhccC
Q 008137 468 SPGMGTAPWIVNSEIYPL--RYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGS--AGTFLLFAGFSLLGLVAIYLLVPE 543 (576)
Q Consensus 468 ~~~~~~~~~~~~~e~~p~--~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~--~~~~~~~~~~~~i~~~~~~~~~~~ 543 (576)
. ....++++++++..|. +..|..+|+.|.+..+..++..+..|.+.+..|. ...+.+.++.++++.+..++.+|+
T Consensus 395 A-~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 395 A-ITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred H-HHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 5 3445788898998884 4569999999999999999999988887776653 346777888888899999899998
Q ss_pred CCC
Q 008137 544 TKG 546 (576)
Q Consensus 544 ~~~ 546 (576)
++.
T Consensus 474 ~~~ 476 (477)
T TIGR01301 474 PRV 476 (477)
T ss_pred CCC
Confidence 764
No 99
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.87 E-value=5.4e-20 Score=201.09 Aligned_cols=164 Identities=15% Similarity=0.200 Sum_probs=132.1
Q ss_pred HHHHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCchHHHHHHHHHHHHHH
Q 008137 34 AGIGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR-FGRKISLLGADVLFFIGA 111 (576)
Q Consensus 34 ~~l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~~i~~ 111 (576)
+++..+...+....+...++. +.+++|.+..+. +++.+.+........+++|+++|| +|||++++++.++++++.
T Consensus 26 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a---~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~ 102 (500)
T PRK09584 26 IFSIELWERFGYYGLQGIMAVYLVKQLGMSEADS---ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY 102 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 334445555555555555555 458899988877 777777776666667899999999 599999999999999999
Q ss_pred HHHHhcc-hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcch--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 008137 112 IIMAIAP-QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKI--RGALVSANGFLITGGQFLAYLINLAFTKAPGTWRW 188 (576)
Q Consensus 112 ~~~~~~~-~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~--R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~ 188 (576)
+++++++ +.+.+.++|+++|++.|...+...+++.|++|+++ |..++++++.+.++|..+||.+++++.+..+ ||+
T Consensus 103 ~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~~~ 181 (500)
T PRK09584 103 ALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-WSV 181 (500)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-HHH
Confidence 9999875 56677788999999999999999999999998653 4567889999999999999999999988777 999
Q ss_pred HHHHhHHHHHHHH
Q 008137 189 MLGVAGLPAVVQF 201 (576)
Q Consensus 189 ~f~v~~~~~~~~~ 201 (576)
.|++.++..++.+
T Consensus 182 ~F~i~~i~~~i~~ 194 (500)
T PRK09584 182 AFALSVVGMLITV 194 (500)
T ss_pred HHHHHHHHHHHHH
Confidence 9999876544433
No 100
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.85 E-value=1.7e-18 Score=183.24 Aligned_cols=375 Identities=17% Similarity=0.097 Sum_probs=258.3
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccC-chHHHHHHHHHHHHHHHHH
Q 008137 36 IGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFG-RKISLLGADVLFFIGAIIM 114 (576)
Q Consensus 36 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~G-rr~~~~~~~~~~~i~~~~~ 114 (576)
..+++.++..+.+.|.++.+.++.|.+..+. |++.++..+...++++++|+++||++ +|+.+.+..++.++...+.
T Consensus 9 ~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qI---G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 9 LMYFLYFFAYGAFLPYLPLYLESRGFSGTQI---GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4456667777888889999999999988888 99999999999999999999999986 5788888888888877777
Q ss_pred HhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH-HHhcCCCc--hhHHHHH
Q 008137 115 AIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLIN-LAFTKAPG--TWRWMLG 191 (576)
Q Consensus 115 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~-~~l~~~~~--~Wr~~f~ 191 (576)
...++++.+++.-++..+......|...++..++..+ ++.-.|-.....++|.+++.... +.+....+ +..+.++
T Consensus 86 ~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (400)
T PF03825_consen 86 AFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY 163 (400)
T ss_pred HHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence 8888999998888888988888899999998888753 34445666667777777764432 22222111 2345666
Q ss_pred HhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhccc
Q 008137 192 VAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGN 271 (576)
Q Consensus 192 v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (576)
+.+...++.....+.+|+.|+....+.+.++ ....+..+++++
T Consensus 164 i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~~-------------------------------------~~~~~~~~llk~ 206 (400)
T PF03825_consen 164 IAAILSLLLAGFALFLPKTPPKRSAKESVKK-------------------------------------LLGLDALKLLKN 206 (400)
T ss_pred HHHHHHHHHHHHHHhCCCCccccccCCCccc-------------------------------------ccchHHHHHhcC
Confidence 6666666555556678887631111100000 000223355666
Q ss_pred chhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHH
Q 008137 272 KIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMF 351 (576)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~ 351 (576)
|.... +.+..+...........+.+.|+++.+..+....+.+..+..+..++...+.+++.+|+|.|+++.++++
T Consensus 207 ~~~~~-----Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~ 281 (400)
T PF03825_consen 207 PRFLV-----FLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALV 281 (400)
T ss_pred ccHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 54432 3333333344456677788899999886566666766677778889999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccc
Q 008137 352 GLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKS 431 (576)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (576)
..++=..++.....+
T Consensus 282 ~~~vR~~l~a~~~~~----------------------------------------------------------------- 296 (400)
T PF03825_consen 282 AYAVRWLLYAYFSDP----------------------------------------------------------------- 296 (400)
T ss_pred HHHHHHHHHHHhcCC-----------------------------------------------------------------
Confidence 888777766655210
Q ss_pred cccccccccccccccCCCCcchhHHHHHH----HHHHHHhcCCcccccchhccccccccccccchhHHHHH-HHHHHHHH
Q 008137 432 TDTLCSDEHRTYFISGCPSSFGWLAVVFL----GAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVS-NWTSNLIV 506 (576)
Q Consensus 432 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~-~~~g~~~~ 506 (576)
.+..+... .+.+..|+... .....++.+..|++.|+++.++++.. ..+|..++
T Consensus 297 ---------------------~~~~~~~~~l~q~lhG~tf~~~~-~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG 354 (400)
T PF03825_consen 297 ---------------------WPFIVALQLLGQLLHGLTFGLFH-AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIG 354 (400)
T ss_pred ---------------------cHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHH
Confidence 01111111 22344443222 23446889999999999999998765 67999999
Q ss_pred HHHHHHHHHhhccchh------hHHHHHHHHHHHHHHHhhccCC
Q 008137 507 SLTFLTLTEALGSAGT------FLLFAGFSLLGLVAIYLLVPET 544 (576)
Q Consensus 507 ~~~~~~l~~~~g~~~~------~~~~~~~~~i~~~~~~~~~~~~ 544 (576)
..+.|.+.|+.|.+.. +.+.+++.++..++.+++.+|+
T Consensus 355 ~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 355 SLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999876643 3445555555555555554443
No 101
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.84 E-value=4.7e-20 Score=194.33 Aligned_cols=424 Identities=15% Similarity=0.154 Sum_probs=278.2
Q ss_pred hchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-hHHH
Q 008137 22 WTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGR-KISL 100 (576)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Gr-r~~~ 100 (576)
..++.+|+.+.+..+..++.....+++.+..-++.++++.+.+.. ..|++.++..++.+++++.+|+++.|.|. |+.+
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~-ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl 105 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATAT-FFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL 105 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcc-hhhHHHHHHHHHHHhcchhhcccccccCCcccCH
Confidence 345577888888889999999999988887777777755433332 33999999999999999999999999997 8889
Q ss_pred HHHHHHHHHHHHHH-Hhc---c-hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHH
Q 008137 101 LGADVLFFIGAIIM-AIA---P-QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLI 175 (576)
Q Consensus 101 ~~~~~~~~i~~~~~-~~~---~-~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l 175 (576)
+.|.++..+|.++. ++. + .-+.++++|++.|+|.| ......+|+++....++|.++++....+..+|.++||.+
T Consensus 106 i~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~ 184 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTI 184 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHH
Confidence 99999999999998 432 3 67889999999999988 567789999999999999999999999999999999999
Q ss_pred HHHhcCCCc-h-----------hHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHH
Q 008137 176 NLAFTKAPG-T-----------WRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNL 242 (576)
Q Consensus 176 ~~~l~~~~~-~-----------Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 242 (576)
+..+..... | +..+-|+.+++.++.++. ..++.|.++....++..++. +
T Consensus 185 q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~---------------~--- 246 (488)
T KOG2325|consen 185 QLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVE---------------E--- 246 (488)
T ss_pred HHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccch---------------h---
Confidence 988765321 1 234667777777777666 45577765432111110000 0
Q ss_pred HHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHH
Q 008137 243 LKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVT 322 (576)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (576)
++ .+..+.-..+.-+...+..+.......+.....-....+..+..++..+.+.........
T Consensus 247 ------~~------------~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~ 308 (488)
T KOG2325|consen 247 ------EK------------SDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITL 308 (488)
T ss_pred ------hc------------cchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHH
Confidence 00 000000011111233344444444444444444555566666777776666655555555
Q ss_pred hHHHHHHHHHHH---Hhh-cccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCC
Q 008137 323 SGLNALGSIVSM---AFV-DKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAK 398 (576)
Q Consensus 323 ~~~~~ig~~~~g---~l~-dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (576)
.+.+.+...+.. +.. .++.+|..+..+++....+..+..+.......
T Consensus 309 ~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~----------------------------- 359 (488)
T KOG2325|consen 309 SISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSG----------------------------- 359 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeecccccc-----------------------------
Confidence 555544443332 222 23345666666655544444443333221110
Q ss_pred cccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchh
Q 008137 399 SWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIV 478 (576)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (576)
-+...+++.+.|+.+++.||-..+-.+..........+++..+.. +.....++
T Consensus 360 --------------------------pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~-~~~~~~tl 412 (488)
T KOG2325|consen 360 --------------------------PVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPF-ISTALDTL 412 (488)
T ss_pred --------------------------ccccccccccCcCcccchhhccCcccChhhheeehhheecccccc-ccchHHHH
Confidence 122233788999999999997544443332222222233333321 12234466
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHh
Q 008137 479 NSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYL 539 (576)
Q Consensus 479 ~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 539 (576)
-+|+..++.+++..|+.......+..++|++...+....|.+..+.+.+...++.......
T Consensus 413 ySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~ 473 (488)
T KOG2325|consen 413 YSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIV 473 (488)
T ss_pred HHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999987777766655555444333
No 102
>PRK09669 putative symporter YagG; Provisional
Probab=99.84 E-value=2.5e-18 Score=185.52 Aligned_cols=336 Identities=15% Similarity=0.063 Sum_probs=213.1
Q ss_pred HHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc----cCch-HHHHHHHHHHHHHHHHHHhcch-----
Q 008137 50 GALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR----FGRK-ISLLGADVLFFIGAIIMAIAPQ----- 119 (576)
Q Consensus 50 ~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~~~~----- 119 (576)
.+...+.+++|++.... |++.++..+..++..++.|+++|| +||| +.++.+.+..+++.++....++
T Consensus 31 ~l~~~~t~~~gls~~~~---g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~ 107 (444)
T PRK09669 31 FLAYFYTDVFGLSAAIM---GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATG 107 (444)
T ss_pred HHHHHHHHhcCCCHHHH---HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcch
Confidence 34555778899998888 999999999999999999999998 7874 5566677777777765555443
Q ss_pred -HHHHHHHHHHHHhhhhhhhhhHHHHHHhcc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC------CchhHHHHH
Q 008137 120 -PWVIILGRIFVGLGVGMASMTAPLYISEAS-PAKIRGALVSANGFLITGGQFLAYLINLAFTKA------PGTWRWMLG 191 (576)
Q Consensus 120 -~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~-~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~------~~~Wr~~f~ 191 (576)
.+.+++..++.+++.......-.++.+|+. ++++|++..++......+|..+++.+...+... ..+|+..+.
T Consensus 108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~ 187 (444)
T PRK09669 108 KIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMM 187 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence 456666677777776666767778899998 568899888888888888777766544332211 124888888
Q ss_pred HhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcc
Q 008137 192 VAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFG 270 (576)
Q Consensus 192 v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (576)
+.++++++..+. ++..+|.+... +++ ..+..++.+..++
T Consensus 188 i~~ii~~v~~~~~~~~~~e~~~~~--~~~--------------------------------------~~~~~~~~~~~~~ 227 (444)
T PRK09669 188 VMGLLGVVLFFCCFFMTKERYTPE--VDN--------------------------------------SSSVWKDLKLLLG 227 (444)
T ss_pred HHHHHHHHHHHHHhCCeEEecCCC--CcC--------------------------------------CCCHHHHHHHHhC
Confidence 888777665544 33344432100 000 0011244566677
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHH
Q 008137 271 NKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSM 350 (576)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~ 350 (576)
++.++......+..... ........+++.+.... +......+.....+..+++.++.++++||+|+|+.+..+.
T Consensus 228 n~~~~~l~~~~~~~~~~-----~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~ 301 (444)
T PRK09669 228 NSQWRIMFIFNVVLLTA-----VVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTI 301 (444)
T ss_pred CchHHHHHHHHHHHHHH-----HHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 77655432222222121 22222222333333332 3334444445556777888899999999999999988776
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccc
Q 008137 351 FGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEK 430 (576)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (576)
++..++.+.+....
T Consensus 302 ~~~~~~~~~~~~~~------------------------------------------------------------------ 315 (444)
T PRK09669 302 VAFVILSALIFFIP------------------------------------------------------------------ 315 (444)
T ss_pred HHHHHHHHHHHHhC------------------------------------------------------------------
Confidence 65554333222210
Q ss_pred ccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccc-------ccccccchhHHHHHHHHHH
Q 008137 431 STDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYP-------LRYRGVGGGIAAVSNWTSN 503 (576)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~rg~~~g~~~~~~~~g~ 503 (576)
.+..+..++...+.+.+.+ ...+..+++.+|..+ .+..|...|+.+.+..+|.
T Consensus 316 -------------------~~~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~ 375 (444)
T PRK09669 316 -------------------PSNVWLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGL 375 (444)
T ss_pred -------------------cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHH
Confidence 0011333333334444443 334567778888764 3345667888899999999
Q ss_pred HHHHHHHHHHHHhhccc
Q 008137 504 LIVSLTFLTLTEALGSA 520 (576)
Q Consensus 504 ~~~~~~~~~l~~~~g~~ 520 (576)
.+++.+.|.+.+..|+.
T Consensus 376 alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 376 AIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999988763
No 103
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.83 E-value=5e-18 Score=184.67 Aligned_cols=357 Identities=12% Similarity=0.027 Sum_probs=220.5
Q ss_pred HHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----ccCc-hHHHHHHHHHHHH
Q 008137 36 IGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWIND----RFGR-KISLLGADVLFFI 109 (576)
Q Consensus 36 l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~d----r~Gr-r~~~~~~~~~~~i 109 (576)
++.+...+..+.+++.++. +.+.+|++.... |.+..+.-+--++..++.|+++| |+|| |+.++++.+..++
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~v---g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i 89 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLV---GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSV 89 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHH
Confidence 4444455555555555444 555668888777 99999999999999999999999 6698 5666778877777
Q ss_pred HHHHHHhcc------hHHHHHHHHHHHHhhhhhhhhhHHHHHHhcc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHh---
Q 008137 110 GAIIMAIAP------QPWVIILGRIFVGLGVGMASMTAPLYISEAS-PAKIRGALVSANGFLITGGQFLAYLINLAF--- 179 (576)
Q Consensus 110 ~~~~~~~~~------~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~-~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l--- 179 (576)
+.+++-..+ .+..+++.-++.+++.....+.-.++..|.. ++++|.+..++-..+.++|.++.+.+...+
T Consensus 90 ~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~ 169 (473)
T PRK10429 90 VLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNY 169 (473)
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766554333 1345566667778888888888889999998 689999999887777777765554443322
Q ss_pred -cC--CCchhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhc
Q 008137 180 -TK--APGTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEG 255 (576)
Q Consensus 180 -~~--~~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (576)
.. ...+|++...+.+++.++..+. ++..+|.+.....+.+ +++
T Consensus 170 ~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~--------------------------------~~~- 216 (473)
T PRK10429 170 VGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSA--------------------------------EGS- 216 (473)
T ss_pred hCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccc--------------------------------ccc-
Confidence 11 1114777777777776655444 4445664311000000 000
Q ss_pred ccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHH
Q 008137 256 LIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMA 335 (576)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~ 335 (576)
..+..+..+..++|+.++..+ ...+...........+.+++.+.... +....+.+.....+..+++.++.++
T Consensus 217 --~~~~~~~~~~~~~n~~~~~ll-----~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~ 288 (473)
T PRK10429 217 --HLTLKDIVALIYKNDQLSCLL-----GMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPR 288 (473)
T ss_pred --CCCHHHHHHHHhcCHHHHHHH-----HHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001113344455555443322 22222223334444445555555444 3444455555666778899999999
Q ss_pred hhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCC
Q 008137 336 FVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAH 415 (576)
Q Consensus 336 l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (576)
+.||+|+|+.+..++++.+++.+.+.......
T Consensus 289 l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 320 (473)
T PRK10429 289 LVKSLSRRILWAGASIFPVLSCGVLLLMGLAA------------------------------------------------ 320 (473)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC------------------------------------------------
Confidence 99999999998877776565554443221100
Q ss_pred CCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccc-------cccc
Q 008137 416 KGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYP-------LRYR 488 (576)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r 488 (576)
.+..+..++...+.+.+.+ ...+..+++.+|..+ .+..
T Consensus 321 ----------------------------------~~~~~~~~i~~~l~g~~~~-~~~~~~~am~ad~id~~e~~tG~R~~ 365 (473)
T PRK10429 321 ----------------------------------PHNALLIVIAGILLNIGTA-LFWVLQVIMVADTVDYGEYKLGIRCE 365 (473)
T ss_pred ----------------------------------chhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhHhcCccch
Confidence 0011333333333333333 223445667788754 3445
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008137 489 GVGGGIAAVSNWTSNLIVSLTFLTLTEALGS 519 (576)
Q Consensus 489 g~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~ 519 (576)
|...|...+...++..+++.+.|.+.+..|+
T Consensus 366 G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 366 SIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6688999999999999999999999987776
No 104
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.82 E-value=1.4e-18 Score=188.38 Aligned_cols=403 Identities=14% Similarity=-0.002 Sum_probs=246.7
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccC-----chHHHHHHH
Q 008137 30 LALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFG-----RKISLLGAD 104 (576)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~G-----rr~~~~~~~ 104 (576)
.+.+++..++..++.......+.|.+.+++|.+..+. +...+...+...+-.+ +|.++||++ ||+.++++.
T Consensus 27 ~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i---~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~ 102 (468)
T TIGR00788 27 VLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARY---QRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSG 102 (468)
T ss_pred HHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHH
Confidence 3444455567788874444455555666899999998 8999999999999665 999999998 778888887
Q ss_pred HHHH-HHHHHHHhcchHHHHH-HHHHHHHhhhhhhhhhHHHHHHhccCcchhhH---HHHHHHHHHHHHHHHHHHHHHHh
Q 008137 105 VLFF-IGAIIMAIAPQPWVII-LGRIFVGLGVGMASMTAPLYISEASPAKIRGA---LVSANGFLITGGQFLAYLINLAF 179 (576)
Q Consensus 105 ~~~~-i~~~~~~~~~~~~~l~-~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~---~~~~~~~~~~~G~~l~~~l~~~l 179 (576)
++.+ ++....+..++..... +.+++.+++.+...+.+..+..|..+ +++.. ..+......++|.++|+.+++.+
T Consensus 103 ~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l 181 (468)
T TIGR00788 103 LLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPL 181 (468)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHH
Confidence 7763 4434444445544444 48899999999999999999999998 54443 33344444568999999999999
Q ss_pred cCCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccch
Q 008137 180 TKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGK 259 (576)
Q Consensus 180 ~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (576)
.+..+ ||..|++.+++.++..+..++++|++.....+.+.++.... .......... .+
T Consensus 182 ~~~~~-~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~-------~~ 239 (468)
T TIGR00788 182 LDKTL-TRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNM--------------ALLTLGVLAN-------VK 239 (468)
T ss_pred HHhcC-cchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhh--------------hhhhhhHHHH-------HH
Confidence 88777 99999999888877766667778863100000000000000 0000000000 00
Q ss_pred hhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc
Q 008137 260 DMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDK 339 (576)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk 339 (576)
+...+.++.++++..++.+...++. .. ........+.-...+..+. ++...+....+..++.+++..+.+++.+|
T Consensus 240 ~~~~~l~~~l~~~~i~~~l~fifl~---~~-~~~~~~~~~f~~~~~~lG~-s~~~~G~~~~~~~v~~i~g~~~~~~~~~~ 314 (468)
T TIGR00788 240 VQILGLRGAIQLLEIAKPLIFIFLS---YA-NLPGASGSVFCATTQCLPG-GPSFSGMSKVVGNLGSLCGVGGYDRFLKT 314 (468)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHH---Hh-hcCCCCceeEEEEcccCCC-CcchhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0012333344444433321111110 01 1111111100011123344 77888888888889999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCC
Q 008137 340 YGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNE 419 (576)
Q Consensus 340 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (576)
++.|+++.++.++.+++.....+.......
T Consensus 315 ~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~-------------------------------------------------- 344 (468)
T TIGR00788 315 FPYRLLFGVTTLLYTLSSLFDLILVKRWNL-------------------------------------------------- 344 (468)
T ss_pred CCHHHHHHHHHHHHHHHHhCceeeeecccc--------------------------------------------------
Confidence 999999988888777766543221110000
Q ss_pred CCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHH
Q 008137 420 YLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSN 499 (576)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~ 499 (576)
..+.|. .+.......+...++++...+. ..+..+..|++.+|+..++.+.+.
T Consensus 345 -------------------------~~gi~~--~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~ 396 (468)
T TIGR00788 345 -------------------------AFGISD--EVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASIL 396 (468)
T ss_pred -------------------------ccCCCC--eeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHH
Confidence 000011 0111222233333333333333 577889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc-----cchhhHHHHHHHH---HHHHHHHhhccC
Q 008137 500 WTSNLIVSLTFLTLTEALG-----SAGTFLLFAGFSL---LGLVAIYLLVPE 543 (576)
Q Consensus 500 ~~g~~~~~~~~~~l~~~~g-----~~~~~~~~~~~~~---i~~~~~~~~~~~ 543 (576)
++|..+++.+.+.+.+..| ++..+....+..+ +.+.+. .++|+
T Consensus 397 ~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~-~llP~ 447 (468)
T TIGR00788 397 HLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLL-HLLPR 447 (468)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHH-HhCCC
Confidence 9999999999999999888 5544443333332 233333 36776
No 105
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.81 E-value=2.4e-16 Score=169.99 Aligned_cols=363 Identities=20% Similarity=0.186 Sum_probs=239.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchHHH-HHHHHHHHHHHHHHHhc-c-hHHHHHHHHHHHHhhhhhhhhhHHHH
Q 008137 68 LQELIVSMAVAGAIFGAGFGGWINDRFGRKISL-LGADVLFFIGAIIMAIA-P-QPWVIILGRIFVGLGVGMASMTAPLY 144 (576)
Q Consensus 68 ~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~-~~~~~~~~i~~~~~~~~-~-~~~~l~~~R~l~G~~~g~~~~~~~~~ 144 (576)
+.++..++..+..++..++.|.++|+-|+||.+ .+..++..+++++..+. + +++...+.-++.-++.+.....-.++
T Consensus 71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~ 150 (477)
T PF11700_consen 71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY 150 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447889999999999999999999999876554 45555556666666664 3 34444555566667888888888999
Q ss_pred HHhccCcchh--------------------------hHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------hhHHHHH
Q 008137 145 ISEASPAKIR--------------------------GALVSANGFLITGGQFLAYLINLAFTKAPG-------TWRWMLG 191 (576)
Q Consensus 145 i~e~~~~~~R--------------------------~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~-------~Wr~~f~ 191 (576)
+.|..+++++ ++..+.-.....+|.++..++...+....+ +-|..+.
T Consensus 151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~ 230 (477)
T PF11700_consen 151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL 230 (477)
T ss_pred hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence 9999999888 888888888888888887777666533222 2488888
Q ss_pred HhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcc
Q 008137 192 VAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFG 270 (576)
Q Consensus 192 v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (576)
+.++.-++..+. ++++||.|+....+......+... ++..+..++..+
T Consensus 231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~-------------------------------~~l~~t~k~~~~ 279 (477)
T PF11700_consen 231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGF-------------------------------KRLWRTFKEIRK 279 (477)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHH-------------------------------HHHHHHHHHHHh
Confidence 877776555444 566787765211111101001000 111123333322
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCCh--HHHHH
Q 008137 271 NKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRR--RLMIV 348 (576)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr--~~~~~ 348 (576)
.+. ...+++..++..-+..++......|.++..+.+..+...+..+..+.+++|++++|++.||+|.| +++..
T Consensus 280 ~~~-----~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~ 354 (477)
T PF11700_consen 280 LRQ-----LFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLI 354 (477)
T ss_pred ChH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 222 22344444555566777777788888765555777777888888999999999999999999988 66665
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccc
Q 008137 349 SMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLID 428 (576)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (576)
..++..+..+.-.+....... |
T Consensus 355 ~l~~~~~i~~~g~~G~~~~~~-----------------------------------------g----------------- 376 (477)
T PF11700_consen 355 SLILWIIIPLYGLFGFWPSFF-----------------------------------------G----------------- 376 (477)
T ss_pred HHHHHHHHHHHHHHHhhhccc-----------------------------------------C-----------------
Confidence 554442222211111110000 0
Q ss_pred ccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHH
Q 008137 429 EKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSL 508 (576)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~ 508 (576)
.+..|...+...+. +.+..+..+..-++.+|+.|+++.+..+|++...+...++++|+
T Consensus 377 ---------------------~~~~~~f~~~a~~~-G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPl 434 (477)
T PF11700_consen 377 ---------------------LKSPWEFWVLAVLI-GLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPL 434 (477)
T ss_pred ---------------------cccHHHHHHHHHHH-HHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 01123323333333 33333555677789999999999999999999999999999999
Q ss_pred HHHHHHHhhc-cchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 008137 509 TFLTLTEALG-SAGTFLLFAGFSLLGLVAIYLLVPETKGL 547 (576)
Q Consensus 509 ~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 547 (576)
+++.+.+..| .+..+....++.++++++. ..++..|++
T Consensus 435 l~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~ 473 (477)
T PF11700_consen 435 LFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGR 473 (477)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhh
Confidence 9999999987 6677887777877777775 445544443
No 106
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.81 E-value=1.3e-16 Score=171.81 Aligned_cols=166 Identities=13% Similarity=0.161 Sum_probs=130.0
Q ss_pred HHHHHHhhhhhhhhHHHHHHHH-HHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchHHHHHHHHHHHHHH
Q 008137 34 AGIGGLLFGYDTGVISGALLYI-KEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF-GRKISLLGADVLFFIGA 111 (576)
Q Consensus 34 ~~l~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~i~~ 111 (576)
++...+...+........+|.+ .+++|.++.+. +.+.+.+.....++.+++|+++||+ |||++++++.++..++.
T Consensus 14 l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a---~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~ 90 (493)
T PRK15462 14 VVALQIWEYFSFYGMRALLILYLTNQLKYDDNHA---YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGH 90 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence 3334444555555555566665 56689988888 8999999999999999999999999 99999999999999998
Q ss_pred HHHHhcc-hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 008137 112 IIMAIAP-QPWVIILGRIFVGLGVGMASMTAPLYISEASPAK--IRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRW 188 (576)
Q Consensus 112 ~~~~~~~-~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~--~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~ 188 (576)
++.++.+ +...+.+...+.++|.|...+...++++|.+|++ +|..++++.+.+.++|..++|.+.+++.+..+ ||+
T Consensus 91 lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w~~ 169 (493)
T PRK15462 91 VVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-WAM 169 (493)
T ss_pred HHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-hHH
Confidence 8777643 2233444445555667777777889999999876 68999999999999999999999999988776 999
Q ss_pred HHHHhHHHHHHHHHH
Q 008137 189 MLGVAGLPAVVQFGL 203 (576)
Q Consensus 189 ~f~v~~~~~~~~~~~ 203 (576)
.|.+.++..++.++.
T Consensus 170 ~F~iaaigm~l~li~ 184 (493)
T PRK15462 170 GFGLAAVGMIAGLVI 184 (493)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999876644443333
No 107
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.80 E-value=8.4e-20 Score=175.39 Aligned_cols=390 Identities=17% Similarity=0.120 Sum_probs=257.0
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCchHHHHH
Q 008137 24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR-FGRKISLLG 102 (576)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~ 102 (576)
..+|...++.+|+-.|-.+++....+.+..++..|.+++..+. .++.+++.....+-++++|++.|| +|.|..-++
T Consensus 39 l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akf---tLlYsvYSwPNvVlcffgGflidr~fgir~gtii 115 (459)
T KOG4686|consen 39 LGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKF---TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTII 115 (459)
T ss_pred hhhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeee---eeeeeeccCCCEEEeeecceeehhhhhhhHHHHH
Confidence 3466777888889899999999999999888999998888888 899999999999999999999997 688877666
Q ss_pred HHHHHHHHHHHHHh---cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137 103 ADVLFFIGAIIMAI---APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF 179 (576)
Q Consensus 103 ~~~~~~i~~~~~~~---~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l 179 (576)
-.....++-++.+. .+.+|.+.++||+.|+|.-...+.-.+|..-|+..||.+.++|+.....-+|..+-..+.+++
T Consensus 116 ~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~l 195 (459)
T KOG4686|consen 116 LCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFL 195 (459)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHH
Confidence 66666677776654 578999999999999999888888999999999999999999999999999988777777666
Q ss_pred cCCCchhHHHHHHhHHHHHHHHHHHhh---ccCChhHHhhcC-CHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhc
Q 008137 180 TKAPGTWRWMLGVAGLPAVVQFGLMMM---LPESPRWLYRQN-KVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEG 255 (576)
Q Consensus 180 ~~~~~~Wr~~f~v~~~~~~~~~~~~~~---l~esp~~l~~~~-~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (576)
.+..+ ..|- ....+.+.+.+.+- ...+-.-....+ .++.+++.+.+-.+. ..+.
T Consensus 196 y~~~~---~~~~-~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~g~-----------------~Ge~- 253 (459)
T KOG4686|consen 196 YDTMG---RMFP-GVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEEGF-----------------LGEE- 253 (459)
T ss_pred HHHHH---Hhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCc-----------------ccCC-
Confidence 54322 1110 00111111111000 000000000000 001111111100000 0000
Q ss_pred ccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHH
Q 008137 256 LIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMA 335 (576)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~ 335 (576)
.++.+ .+.+..+ ++.+...+...++.+.-+....|.++++..+.+...++.+....++.+.+.+++.|.
T Consensus 254 -------pkLtd---v~~f~pp-fw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~ 322 (459)
T KOG4686|consen 254 -------PKLTD---VNTFYPP-FWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGA 322 (459)
T ss_pred -------ccccc---ccccCcc-HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHH
Confidence 01111 1111222 333444455556667778888888888877768888887777778889999999999
Q ss_pred hhcccCChHHHHHH-HHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccC
Q 008137 336 FVDKYGRRRLMIVS-MFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCA 414 (576)
Q Consensus 336 l~dk~grr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (576)
++||+|++...+.+ ++....+...+.+..
T Consensus 323 i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~-------------------------------------------------- 352 (459)
T KOG4686|consen 323 ISDKYGFNLWWVASACILTLLGHSGLFFTF-------------------------------------------------- 352 (459)
T ss_pred hHhhhcceehhHHHHHHHHHHHhhhHHhhh--------------------------------------------------
Confidence 99999998766543 333333333333321
Q ss_pred CCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhH
Q 008137 415 HKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGI 494 (576)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~ 494 (576)
|-..+.+.+++..+... ....|..++-+.|.+.-|++.|+
T Consensus 353 ---------------------------------------lsPy~~m~~lGLsysll-AcslWP~va~~vpE~qLGTaygf 392 (459)
T KOG4686|consen 353 ---------------------------------------LSPYTSMTFLGLSYSLL-ACSLWPCVASLVPEEQLGTAYGF 392 (459)
T ss_pred ---------------------------------------ccHHHHHHHHhhhHHHH-HHHHhhhhhhhCCHHHhcchHHH
Confidence 12233444444444321 22345667788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc----hhhHHHHHHHHHHHHHHHh
Q 008137 495 AAVSNWTSNLIVSLTFLTLTEALGSA----GTFLLFAGFSLLGLVAIYL 539 (576)
Q Consensus 495 ~~~~~~~g~~~~~~~~~~l~~~~g~~----~~~~~~~~~~~i~~~~~~~ 539 (576)
++.+.++|-.+.|+++|.+.|..|.+ .-|+..+.+++....+.+.
T Consensus 393 ~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 393 IQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred HHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999887632 2344445555555555443
No 108
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.79 E-value=3.4e-17 Score=175.86 Aligned_cols=338 Identities=15% Similarity=0.194 Sum_probs=240.9
Q ss_pred HHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----ccCchH-HHHHHHHHHHHHHHHHHhc-c-----
Q 008137 50 GALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWIND----RFGRKI-SLLGADVLFFIGAIIMAIA-P----- 118 (576)
Q Consensus 50 ~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~d----r~Grr~-~~~~~~~~~~i~~~~~~~~-~----- 118 (576)
.+.+.+.+.++++.... |++..+..+-.++..++.|.++| |+|||| .++++....+++.+++... +
T Consensus 23 ~~~~f~~~~~gl~~~~~---g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~ 99 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALA---GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSF 99 (428)
T ss_pred HHHHHHHHHcCCCHHHH---HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhh
Confidence 34455667778888777 99999999999999999999999 899765 5556888888888777766 4
Q ss_pred --hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------hhHHH
Q 008137 119 --QPWVIILGRIFVGLGVGMASMTAPLYISEASP-AKIRGALVSANGFLITGGQFLAYLINLAFTKAPG------TWRWM 189 (576)
Q Consensus 119 --~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~-~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~------~Wr~~ 189 (576)
....+.+.-++..++.......-.++..|..+ +++|.+..+.-+.+..+|.++...+.+.+.+..+ +|++.
T Consensus 100 ~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~ 179 (428)
T PF13347_consen 100 TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWM 179 (428)
T ss_pred hhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHH
Confidence 23445677777788888888888999999997 5789999999999888888766666665554322 59999
Q ss_pred HHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhh
Q 008137 190 LGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGA 268 (576)
Q Consensus 190 f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (576)
.++.+++.++..+. .+..+|.++....+ ....+..+..+..
T Consensus 180 ~~v~~iv~~v~~~i~~~~~ke~~~~~~~~--------------------------------------~~~~~~~~~~~~~ 221 (428)
T PF13347_consen 180 ALVLAIVGLVFFLITFFFVKERSVEVTEQ--------------------------------------EKKISLRDSLRSL 221 (428)
T ss_pred HHHHHHHHHHHhhhhhheeeecccccccc--------------------------------------ccccccccchhhh
Confidence 99998888877666 45566621100000 0001112445666
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHH
Q 008137 269 FGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIV 348 (576)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~ 348 (576)
++++.++. .....+.+..+........++|.+...+.+ ...+.......+..+++.++.++++||+|+|+.+..
T Consensus 222 ~~nr~~~~-----l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~ 295 (428)
T PF13347_consen 222 FRNRPFRI-----LLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII 295 (428)
T ss_pred cccchHHH-----HHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence 77765543 222333334444555556667777665534 455666677788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccc
Q 008137 349 SMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLID 428 (576)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (576)
+.++.+++.+++.+....
T Consensus 296 ~~~~~~~~~~~~~~~~~~-------------------------------------------------------------- 313 (428)
T PF13347_consen 296 GLLLAALGFLLLFFLGPG-------------------------------------------------------------- 313 (428)
T ss_pred hHHHHHHHHHHHHHHHhh--------------------------------------------------------------
Confidence 999988888876665320
Q ss_pred ccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccc-------ccccccchhHHHHHHHH
Q 008137 429 EKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYP-------LRYRGVGGGIAAVSNWT 501 (576)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~rg~~~g~~~~~~~~ 501 (576)
..+...+...+.+.+.+ ......+++.+|+.+ .+..|...|+.+....+
T Consensus 314 -----------------------~~~~~~i~~~l~gi~~~-~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~ 369 (428)
T PF13347_consen 314 -----------------------SPWLVLILFILAGIGYG-AFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI 369 (428)
T ss_pred -----------------------hHHHHHHHHHHhHhhhc-ccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH
Confidence 12444555555555554 334567788888876 34468889999999999
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 008137 502 SNLIVSLTFLTLTEALGSA 520 (576)
Q Consensus 502 g~~~~~~~~~~l~~~~g~~ 520 (576)
+..+++.+.+.+.+..|+.
T Consensus 370 ~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 370 GQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred HHHHHHHHHHHHHHHhCcC
Confidence 9999999999998876654
No 109
>PRK09848 glucuronide transporter; Provisional
Probab=99.79 E-value=2.1e-16 Score=170.77 Aligned_cols=349 Identities=11% Similarity=0.042 Sum_probs=206.2
Q ss_pred HHHHhhhhhhhhHHHHH-HHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CchHHH-HHHHHHHHH
Q 008137 36 IGGLLFGYDTGVISGAL-LYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF----GRKISL-LGADVLFFI 109 (576)
Q Consensus 36 l~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~----Grr~~~-~~~~~~~~i 109 (576)
++.+..........+.+ +.+.+.+|.+..+. |.+.++..+..++..++.|+++||. |||+.. +++.+...+
T Consensus 15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~---g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~ 91 (448)
T PRK09848 15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAA---GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMI 91 (448)
T ss_pred cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHH
Confidence 34444444444444433 45566678888877 9999999999999999999999996 777644 555554544
Q ss_pred HHHHH-Hh----cc--hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccC-cchhhHHHHHHHHHHH-----HHHHHHHHHH
Q 008137 110 GAIIM-AI----AP--QPWVIILGRIFVGLGVGMASMTAPLYISEASP-AKIRGALVSANGFLIT-----GGQFLAYLIN 176 (576)
Q Consensus 110 ~~~~~-~~----~~--~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~-~~~R~~~~~~~~~~~~-----~G~~l~~~l~ 176 (576)
.+++. .. ++ ..+.+++.-++.+++.+...+...++..|..+ +++|.+..++-..+.+ +|..++|.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~ 171 (448)
T PRK09848 92 FSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIK 171 (448)
T ss_pred HHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 21 11 12334455677788888888777777777664 4678887666554433 4555666666
Q ss_pred HHhcCCCc-hhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhh
Q 008137 177 LAFTKAPG-TWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEE 254 (576)
Q Consensus 177 ~~l~~~~~-~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 254 (576)
........ .|.....+.++++++..+. ....+|++.. +.+.
T Consensus 172 ~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~---~~~~---------------------------------- 214 (448)
T PRK09848 172 NSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVR---IVAQ---------------------------------- 214 (448)
T ss_pred HhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCC---CccC----------------------------------
Confidence 54321111 1222222333333322222 3334554210 0000
Q ss_pred cccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHH
Q 008137 255 GLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSM 334 (576)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g 334 (576)
......++.+++++.++.. ....+..+........+.|+++++..+.+....++......++.+++.++.+
T Consensus 215 ----~~~~~~~~~l~~n~~f~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 285 (448)
T PRK09848 215 ----PSLKISLQTLKRNRPLFML-----CIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVP 285 (448)
T ss_pred ----CCHHHHHHHHhCCchHHHH-----HHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111345566677665432 2222223333444555667777766554555555544444566778899999
Q ss_pred HhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccC
Q 008137 335 AFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCA 414 (576)
Q Consensus 335 ~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (576)
++.||+|+|+.+..+.++..++.+++.+...
T Consensus 286 ~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~------------------------------------------------- 316 (448)
T PRK09848 286 GMVARIGKKNTFLIGALLGTCGYLLFFWVSV------------------------------------------------- 316 (448)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc-------------------------------------------------
Confidence 9999999999999888877777655543210
Q ss_pred CCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccc-------cc
Q 008137 415 HKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPL-------RY 487 (576)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~ 487 (576)
...|...+...+...+.+.. .+..+++.+|..|. +.
T Consensus 317 ------------------------------------~~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~~~~~~~g~r~ 359 (448)
T PRK09848 317 ------------------------------------WSLPVALVALAIASIGQGVT-MTVMWALEADTVEYGEYLTGVRI 359 (448)
T ss_pred ------------------------------------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHhhCccc
Confidence 00133233333333333322 23455666676653 34
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008137 488 RGVGGGIAAVSNWTSNLIVSLTFLTLTEALGS 519 (576)
Q Consensus 488 rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~ 519 (576)
+|...|+.+....+|..+++.+.+.+.+..|+
T Consensus 360 ~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 360 EGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 68899999999999999999999998887665
No 110
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.79 E-value=2.6e-17 Score=171.74 Aligned_cols=379 Identities=14% Similarity=0.090 Sum_probs=234.6
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH--HHHH
Q 008137 35 GIGGLLFGYDTGVISGALLYIKED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLF--FIGA 111 (576)
Q Consensus 35 ~l~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~--~i~~ 111 (576)
++..+...+..++..+.+|...++ -|++.++. |.+.++..+...+.+++.|.++||+|.|+-++..+.+. ..+.
T Consensus 13 s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~i---G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~p 89 (412)
T PF01306_consen 13 SLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEI---GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGP 89 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCHHHH---HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence 344455666678888888887765 89999999 99999999999999999999999999766554433322 2222
Q ss_pred HH-HHhc----chH-HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 008137 112 II-MAIA----PQP-WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGT 185 (576)
Q Consensus 112 ~~-~~~~----~~~-~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~ 185 (576)
+. ..+. .|. ...+++-...|++.....|+.-+++.++. ++.+.-.|-..+..++|.+++..++|.+.+. +
T Consensus 90 ff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i--~ 165 (412)
T PF01306_consen 90 FFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI--N 165 (412)
T ss_dssp HHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee--C
Confidence 22 2222 222 22333334445555555666666665554 2334556667788899999999999988764 3
Q ss_pred hHHHHHHhHHHHHHHHHHHhhc-cCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHH
Q 008137 186 WRWMLGVAGLPAVVQFGLMMML-PESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISR 264 (576)
Q Consensus 186 Wr~~f~v~~~~~~~~~~~~~~l-~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (576)
-+..||+....+++..++.+.. |+.++.....+..+. + .++...++
T Consensus 166 p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~-~--------------------------------~~~~~~~~ 212 (412)
T PF01306_consen 166 PNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGA-K--------------------------------KDKVSLKD 212 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS---------------------------------------HHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccccc-C--------------------------------CCCCcHHH
Confidence 5778888776666555443333 333221111000000 0 00000134
Q ss_pred hhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCC---chhHHHHHHHHHhHHHHHHHHHHHHhhcccC
Q 008137 265 LKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFA---SKSTALALSLVTSGLNALGSIVSMAFVDKYG 341 (576)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~g 341 (576)
..++++++.+|.- .+........+..+-...+.|....... +....+.+..+..+..++...+..++.+|+|
T Consensus 213 ~~~l~k~~~fw~~-----~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig 287 (412)
T PF01306_consen 213 VLSLFKMRNFWFF-----VLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIG 287 (412)
T ss_dssp HHHHTTSHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhcchhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5566666655442 2222222222333333344555443321 3445677778888888899999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCC
Q 008137 342 RRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYL 421 (576)
Q Consensus 342 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (576)
.|+.++++..++.+=.++.++...
T Consensus 288 ~k~~Lllag~i~~iRi~~~~~~~~-------------------------------------------------------- 311 (412)
T PF01306_consen 288 AKNLLLLAGVIMAIRIIGSGFATN-------------------------------------------------------- 311 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--S--------------------------------------------------------
T ss_pred hHhHHHHHHHHHHHHHHHHhhhcc--------------------------------------------------------
Confidence 999999988888887776665532
Q ss_pred CCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHH-HHHHH
Q 008137 422 PGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIA-AVSNW 500 (576)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~-~~~~~ 500 (576)
.|.....=.+-...+..... ...-++++.+|++..++...+. +....
T Consensus 312 -------------------------------~~~i~~~klLH~~e~~l~lv-a~fkYI~~~fd~rlsAt~y~v~~~~~~~ 359 (412)
T PF01306_consen 312 -------------------------------PWVISLIKLLHALEFPLLLV-AAFKYITAHFDKRLSATLYLVGFQFAKQ 359 (412)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS-GGGHHHHHHHHHTTTHH
T ss_pred -------------------------------hHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhHHHHHHHHHHHHHHH
Confidence 13333333333333322222 2235788999999988888885 67889
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCC
Q 008137 501 TSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKG 546 (576)
Q Consensus 501 ~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 546 (576)
+|.++.+.+.|.++|+.|++.+|++++.+.++..++..+.+++.++
T Consensus 360 ~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 360 IGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 9999999999999999999999999999988888888777765443
No 111
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.78 E-value=9.3e-17 Score=164.99 Aligned_cols=400 Identities=14% Similarity=0.102 Sum_probs=274.4
Q ss_pred hhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHH
Q 008137 21 VWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISL 100 (576)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~ 100 (576)
.+..++||.++++.++-.+.+++....+++.-.+....|+ +.+.. -|..-+|.+.+....+++-|+.|++|-|...
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~---~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ 112 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAA---DWLSMIYMVVSVPFGFAAMWILDKFGLRTAL 112 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHH---HHHHHHHHHHHHHHhhHHHHhhcccchHHHH
Confidence 3577899999999999999999998888888877888888 55555 7889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc------hHH--HHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHH
Q 008137 101 LGADVLFFIGAIIMAIAP------QPW--VIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLA 172 (576)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~------~~~--~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~ 172 (576)
+++.++..+|+.+-..+. .++ ....+..+.+.+.-...........-||++++|..|..+-.++..+|..++
T Consensus 113 llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg 192 (480)
T KOG2563|consen 113 LLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVG 192 (480)
T ss_pred HHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHH
Confidence 999999999999877764 344 666888899988887777777888999999999999999999999999999
Q ss_pred HHHHHHhcCCC-----chhHH--HHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHH
Q 008137 173 YLINLAFTKAP-----GTWRW--MLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLK 244 (576)
Q Consensus 173 ~~l~~~l~~~~-----~~Wr~--~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 244 (576)
.++...+.... ..|.. +|+....++.+.+.+ .+..++.|+......+...
T Consensus 193 ~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~---------------------- 250 (480)
T KOG2563|consen 193 FLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL---------------------- 250 (480)
T ss_pred hhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh----------------------
Confidence 99998887654 13544 355445544444443 3334443331111100000
Q ss_pred HHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhH
Q 008137 245 QSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSG 324 (576)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (576)
.+.++.++.++.++++.+ ...+..+......++...+.+..-+...+. +...+|.......+
T Consensus 251 ------------~~~~f~~si~~~~~n~~F-----~il~~~ygi~~g~F~~l~~~l~~~l~~sgY-~~~~aG~ig~l~iv 312 (480)
T KOG2563|consen 251 ------------QDASFPKSIKSCFKNRQF-----IILAICYGIGLGLFNSLSTLLNLALCPSGY-EGVFAGYIGALMIV 312 (480)
T ss_pred ------------hcCcHHHHHHHHHcCccH-----HHHHHHHhhhHHHHHHHHHHhhhccccccC-CccccchhHHHHHH
Confidence 011133566777776643 223333333333444444433323333344 44788888888899
Q ss_pred HHHHHHHHHHHhhcccCChHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCccccc
Q 008137 325 LNALGSIVSMAFVDKYGRRRL-MIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCM 403 (576)
Q Consensus 325 ~~~ig~~~~g~l~dk~grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (576)
.+++++.+.|.+.||.+.-+. +++......++. ++........
T Consensus 313 ~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~-~~l~~~t~~~----------------------------------- 356 (480)
T KOG2563|consen 313 AGMLGALASGIIADKTKKFKLTTLVLYLFALVGT-LMLLTCTLFL----------------------------------- 356 (480)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHhhccC-----------------------------------
Confidence 999999999999999876444 333333333332 2222111100
Q ss_pred ccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccc
Q 008137 404 DCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIY 483 (576)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 483 (576)
.. .+.+...+.....+..+..|+..-+..|..
T Consensus 357 -----------------------------------------------~~-~viv~~t~~~~g~~~~~~~Pig~ElgvE~T 388 (480)
T KOG2563|consen 357 -----------------------------------------------GD-SVIVFTTCGLLGFFGTGYLPIGFELGVETT 388 (480)
T ss_pred -----------------------------------------------Cc-eEehhhhHHHHHHhhcCCCCcceeeeeeec
Confidence 00 122333444455566677888888888876
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHhhc----cchhhHHHHHHHHHHHHHHHhhccCCCCCC
Q 008137 484 PLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALG----SAGTFLLFAGFSLLGLVAIYLLVPETKGLA 548 (576)
Q Consensus 484 p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 548 (576)
=|..-++..|+.+..+++-+.+-..+.+...+..+ +...-+.....++++.++..++.|+-|+++
T Consensus 389 yPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~ 457 (480)
T KOG2563|consen 389 YPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLR 457 (480)
T ss_pred cccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHh
Confidence 56667899999999999999998888888888776 554556666666667777666665544433
No 112
>PRK11462 putative transporter; Provisional
Probab=99.77 E-value=8.6e-16 Score=166.41 Aligned_cols=270 Identities=13% Similarity=0.018 Sum_probs=168.3
Q ss_pred HHHHhhhhhhhhHHHH-HHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc----cCchH-HHHHHHHHHHH
Q 008137 36 IGGLLFGYDTGVISGA-LLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR----FGRKI-SLLGADVLFFI 109 (576)
Q Consensus 36 l~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr----~Grr~-~~~~~~~~~~i 109 (576)
++.+........++.. ...+.+..|++.... |.+..+.-+--++..++.|+++|| +|||| .++++.+..++
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~---g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i 92 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFV---GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGI 92 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHH---HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHH
Confidence 3333334444444443 344566778888777 999999999999999999999995 79864 55567677777
Q ss_pred HHHHHHhcch------HHHHHHHHHHHHhhhhhhhhhHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008137 110 GAIIMAIAPQ------PWVIILGRIFVGLGVGMASMTAPLYISEASP-AKIRGALVSANGFLITGGQFLAYLINLAFTKA 182 (576)
Q Consensus 110 ~~~~~~~~~~------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~-~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~ 182 (576)
+.+++-..++ ...+.+.-++..++.......-.++..|..+ ++||++..++...+..+|..+++.+...+...
T Consensus 93 ~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~ 172 (460)
T PRK11462 93 VCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNL 172 (460)
T ss_pred HHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766554442 4455666677788888888888889999986 78999999999999999888776665443322
Q ss_pred C------chhHHHHHHhHHHHHHHHHHH-hhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhc
Q 008137 183 P------GTWRWMLGVAGLPAVVQFGLM-MMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEG 255 (576)
Q Consensus 183 ~------~~Wr~~f~v~~~~~~~~~~~~-~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (576)
. .+|+....+.++++++..... ...+|.++. .+++
T Consensus 173 ~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~--~~~~------------------------------------ 214 (460)
T PRK11462 173 IGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEA--PPTT------------------------------------ 214 (460)
T ss_pred hCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCC--CccC------------------------------------
Confidence 1 148887777777766555443 334443210 0000
Q ss_pred ccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHH
Q 008137 256 LIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMA 335 (576)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~ 335 (576)
....+..+..++|+.++..... .+..............+|.+...+ +....+.+.....+.++++.+++++
T Consensus 215 ---~~~~~~l~~~~~Nk~~~~l~~~-----~~~~~~~~~~~~~~~~y~~~y~~g-~~~~~~~~l~~~~i~~iig~~l~~~ 285 (460)
T PRK11462 215 ---TSMREDLRDIWQNDQWRIVGLL-----TIFNILAVCVRGGAMMYYVTWILG-TPEVFVAFLTTYCVGNLIGSALAKP 285 (460)
T ss_pred ---CCHHHHHHHHhCChHHHHHHHH-----HHHHHHHHHHHHhHhhhhhhhhcC-ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011344555666655432111 111112222222222333333333 3333444556667778899999999
Q ss_pred hhcccCChHHHHHHHHHHHH
Q 008137 336 FVDKYGRRRLMIVSMFGLSS 355 (576)
Q Consensus 336 l~dk~grr~~~~~~~~~~~~ 355 (576)
++||+++|+.+..+..+..+
T Consensus 286 l~~r~gkk~~~~~~~~~~~~ 305 (460)
T PRK11462 286 LTDWKCKVTIFWWTNALLAV 305 (460)
T ss_pred HHHHhChHHHHHHHHHHHHH
Confidence 99999999887655444333
No 113
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.76 E-value=2e-16 Score=173.28 Aligned_cols=308 Identities=17% Similarity=0.187 Sum_probs=226.8
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 008137 29 KLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFF 108 (576)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~ 108 (576)
..+.++++..+.+++....+...+..+-+.|+++.++. |++.+.+-++..+...+..+...|.-|-+.+-+|.++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~s---G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~ 173 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQS---GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMG 173 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcc---eeEeeecccchhhhhHhHHHhccccCccceeeechhHHH
Confidence 34556677778888888889999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc--------------------c---------------------------h----HH-HHHHHHHHHHhhhhh
Q 008137 109 IGAIIMAIA--------------------P---------------------------Q----PW-VIILGRIFVGLGVGM 136 (576)
Q Consensus 109 i~~~~~~~~--------------------~---------------------------~----~~-~l~~~R~l~G~~~g~ 136 (576)
++++++++- + . ++ .++++.++.|+|...
T Consensus 174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp 253 (735)
T KOG3626|consen 174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP 253 (735)
T ss_pred HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence 999998872 0 0 23 567889999999999
Q ss_pred hhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------------chhHHHHHHhHHHHH
Q 008137 137 ASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP------------------GTWRWMLGVAGLPAV 198 (576)
Q Consensus 137 ~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~------------------~~Wr~~f~v~~~~~~ 198 (576)
.++...+|+-|....++-+.++|+..+...+|.++|.++++++...+ |.|..-|++.+.+.+
T Consensus 254 i~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~ 333 (735)
T KOG3626|consen 254 IFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLL 333 (735)
T ss_pred CccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876432 247777888899888
Q ss_pred HHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhh
Q 008137 199 VQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGL 278 (576)
Q Consensus 199 ~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (576)
+..+.++++|++.+...++ ..+++ .+...+... ..++........+++....+.+++|+.
T Consensus 334 ~~a~p~f~fPk~lp~~~~~---~~~~~----~~~~k~~~~--------~~~~~~~~~~~ikdfp~s~~~ll~N~i----- 393 (735)
T KOG3626|consen 334 FSAVPLFFFPKELPKSQKR---KRARD----LHVLKTESG--------GAKSDKTFGKKIKDFPKSIKRLLSNPI----- 393 (735)
T ss_pred HHHHHHHhCcccCcccccc---chhhh----hcccccccc--------cccCCcchhhhHHHHHHHHHHHhcCch-----
Confidence 8888899998764321110 01000 000000000 000000111122344566777777764
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHH-HHhHHHHHHHHHHHHhhcccC--ChHHHHHHHHHHHH
Q 008137 279 YAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSL-VTSGLNALGSIVSMAFVDKYG--RRRLMIVSMFGLSS 355 (576)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ig~~~~g~l~dk~g--rr~~~~~~~~~~~~ 355 (576)
+...++...+....+..+..|+|.|++.....+...+..+.. +...+..+|.+++|+++.|+. .|....+.++...+
T Consensus 394 f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l 473 (735)
T KOG3626|consen 394 FMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVL 473 (735)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHH
Confidence 455555666666678888899999999877767777776664 444455788999999999874 45555555555555
Q ss_pred HHHH
Q 008137 356 CLVA 359 (576)
Q Consensus 356 ~~~~ 359 (576)
+++.
T Consensus 474 ~l~~ 477 (735)
T KOG3626|consen 474 SLLF 477 (735)
T ss_pred HHHH
Confidence 5444
No 114
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.74 E-value=6.1e-16 Score=158.77 Aligned_cols=276 Identities=14% Similarity=0.078 Sum_probs=186.7
Q ss_pred hcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------
Q 008137 116 IAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP------------ 183 (576)
Q Consensus 116 ~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~------------ 183 (576)
...+++.++++-++.|.|.+...+.+..++++..+++++++.+++.+...++|.+++|++++.+....
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999876321
Q ss_pred ---chhHHHHHHhHHHHHHHHHHHhh--ccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccc
Q 008137 184 ---GTWRWMLGVAGLPAVVQFGLMMM--LPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIG 258 (576)
Q Consensus 184 ---~~Wr~~f~v~~~~~~~~~~~~~~--l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (576)
.+||++|++.+.+.++..+.+.+ +||..+ ++.++.. +.+.
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~~---------------------------~~~~--- 130 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARVS---------------------------SGDT--- 130 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----ccccccc---------------------------cccc---
Confidence 25999999776665555444433 354321 0000000 0000
Q ss_pred hhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhh--cCCchhHHHHHHHHHhHHHHHHHHHHHHh
Q 008137 259 KDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFA--GFASKSTALALSLVTSGLNALGSIVSMAF 336 (576)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ig~~~~g~l 336 (576)
.+.++.++++ .++...+..++..........|.+.|+.+. .+.+...++........+.++|+++++++
T Consensus 131 ----~~~~~~~~~~-----~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l 201 (310)
T TIGR01272 131 ----TQKTSAFQFT-----HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAV 201 (310)
T ss_pred ----cchhhHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001112221 222233444444445667778889998753 24477788888888899999999999999
Q ss_pred hcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCC
Q 008137 337 VDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHK 416 (576)
Q Consensus 337 ~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (576)
.||+++|+.+..+.++..++.+++....
T Consensus 202 ~~r~g~~~~l~~~~~l~~~~~~l~~~~~---------------------------------------------------- 229 (310)
T TIGR01272 202 MPMISQGRYLAFNAFLAVLLSIGAALTH---------------------------------------------------- 229 (310)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHcC----------------------------------------------------
Confidence 9999999988777666665543332210
Q ss_pred CCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHH
Q 008137 417 GNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAA 496 (576)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~ 496 (576)
++.....+.+.+++.+ ...|...+...+.+|++ .+++.++.
T Consensus 230 ------------------------------------~~~~~~~~~l~g~~~s-~i~P~~~s~a~~~~~~~-~~~asai~- 270 (310)
T TIGR01272 230 ------------------------------------GYVAMWFVLALGLFNS-IMFPTIFSLALNALGRH-TSQGSGIL- 270 (310)
T ss_pred ------------------------------------CHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhh-hhhhHHHH-
Confidence 0111222233333333 34455556666766643 56777775
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHH
Q 008137 497 VSNWTSNLIVSLTFLTLTEALGSAGTFLLF 526 (576)
Q Consensus 497 ~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~ 526 (576)
..+.+|+++.|.+.|.+.|..|.+.++++.
T Consensus 271 ~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~ 300 (310)
T TIGR01272 271 CLAIVGGAIVPLLQGSLADCLGIQLAFALP 300 (310)
T ss_pred HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence 567899999999999999998887776633
No 115
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.73 E-value=1.6e-14 Score=152.35 Aligned_cols=355 Identities=17% Similarity=0.155 Sum_probs=241.2
Q ss_pred HHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc----cCc-hHHHHHHHHHHHH
Q 008137 36 IGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR----FGR-KISLLGADVLFFI 109 (576)
Q Consensus 36 l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr----~Gr-r~~~~~~~~~~~i 109 (576)
++-+............+.. +.+.+|++.... |.+..+.-+--++.-++.|.+.|| +|| |+-++.+.+-+++
T Consensus 19 ~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~a---G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i 95 (467)
T COG2211 19 LGDFASNFAFGIVVLYLLFFYTDVFGLSAALA---GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAI 95 (467)
T ss_pred chhhHHHHHHHHHHHHHHHHHhcccCCcHHHH---HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHH
Confidence 4444444454555554544 456678888777 888888888889999999999994 787 5667778788888
Q ss_pred HHHHHHhcch------HHHHHHHHHHHHhhhhhhhhhHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 008137 110 GAIIMAIAPQ------PWVIILGRIFVGLGVGMASMTAPLYISEASP-AKIRGALVSANGFLITGGQFLAYLINLAFTK- 181 (576)
Q Consensus 110 ~~~~~~~~~~------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~-~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~- 181 (576)
.+.++-.+++ ....++.-.+.+++.......-.++..|..+ ++||.+..++-+.+.++|.++...+...+..
T Consensus 96 ~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~ 175 (467)
T COG2211 96 VAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKL 175 (467)
T ss_pred HHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877763 4455667788888888888878888888874 7899999999999999997765555444332
Q ss_pred ---C--CchhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhc
Q 008137 182 ---A--PGTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEG 255 (576)
Q Consensus 182 ---~--~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (576)
. ..+|+..-++.++++++..+. ++-.+|.+... .+.+ +
T Consensus 176 ~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~-~~~~-~---------------------------------- 219 (467)
T COG2211 176 FGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVET-QPTK-T---------------------------------- 219 (467)
T ss_pred hCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCcc-ccCc-c----------------------------------
Confidence 2 125888888888777776655 34455553200 0000 0
Q ss_pred ccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHH
Q 008137 256 LIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMA 335 (576)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~ 335 (576)
....+........++|+.++.... ...+.+.+.+.......+|.+.....+.............+.+++.++...
T Consensus 220 ~~~~~~~~~~~~~~~Nrp~~~~l~-----~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~ 294 (467)
T COG2211 220 GVKLKLKDSFLLIFKNRPLLLLLL-----MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPR 294 (467)
T ss_pred cccccHHHHHHHHHccchHHHHHH-----HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 000111133445666766655333 223333334445555556666555556666666667777777777999999
Q ss_pred hhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCC
Q 008137 336 FVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAH 415 (576)
Q Consensus 336 l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (576)
+++|+|+|++...+.++.+++.+++.+...
T Consensus 295 L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~-------------------------------------------------- 324 (467)
T COG2211 295 LVKKFGKKKLFLIGLLLLAVGYLLLYFTPA-------------------------------------------------- 324 (467)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHhhcC--------------------------------------------------
Confidence 999999999999998888888887766631
Q ss_pred CCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccc-------cccc
Q 008137 416 KGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYP-------LRYR 488 (576)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r 488 (576)
+..++.++..++...+.+ ...+++|++.+|... .+..
T Consensus 325 -----------------------------------~~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~e 368 (467)
T COG2211 325 -----------------------------------GSVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRRE 368 (467)
T ss_pred -----------------------------------cchHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCch
Confidence 112333444444444444 345688899888753 3455
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008137 489 GVGGGIAAVSNWTSNLIVSLTFLTLTEALGSA 520 (576)
Q Consensus 489 g~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~ 520 (576)
|...|...++..+|.+++..+.|++.+..|+.
T Consensus 369 Gi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv 400 (467)
T COG2211 369 GIVYSGMTFFRKLGLALAGFIPGWILGAIGYV 400 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88899999999999999999999998877654
No 116
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.67 E-value=4e-14 Score=148.19 Aligned_cols=169 Identities=18% Similarity=0.276 Sum_probs=134.9
Q ss_pred HHHHhhhhhhhhHHH-HHHHHHHhhc----cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchHHHHHHHHHHHH
Q 008137 36 IGGLLFGYDTGVISG-ALLYIKEDFR----DVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF-GRKISLLGADVLFFI 109 (576)
Q Consensus 36 l~~~~~~~~~~~~~~-~~~~i~~~~~----~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~i 109 (576)
..-+-.-++.+.... +.-++..+++ .++++. .-+.+.|..-.-...+++||++||+ |+|+++++|.+++.+
T Consensus 28 ~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A---~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~i 104 (498)
T COG3104 28 FVELWERFSYYGMRAILILYLYYQLGDGLGFDETHA---TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAI 104 (498)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhh---HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 333444444333333 3344555666 777777 5566666666666789999999996 999999999999999
Q ss_pred HHHHHHhcc--hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcch--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 008137 110 GAIIMAIAP--QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKI--RGALVSANGFLITGGQFLAYLINLAFTKAPGT 185 (576)
Q Consensus 110 ~~~~~~~~~--~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~--R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~ 185 (576)
|.++.+.+. ++..+.++-.+.++|.|..=+...++++|.+|+++ |-..++++.++.++|.+++|++.+++.+..+
T Consensus 105 Gh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g- 183 (498)
T COG3104 105 GHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG- 183 (498)
T ss_pred HHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhC-
Confidence 999999984 78899999999999999999999999999997643 6778899999999999999999999999988
Q ss_pred hHHHHHHhHHHHHHHHHHHhhcc
Q 008137 186 WRWMLGVAGLPAVVQFGLMMMLP 208 (576)
Q Consensus 186 Wr~~f~v~~~~~~~~~~~~~~l~ 208 (576)
|+..|.+.++-..+.++.++..+
T Consensus 184 ~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 184 WHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999998887766666655443
No 117
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.66 E-value=6.9e-18 Score=184.47 Aligned_cols=312 Identities=17% Similarity=0.160 Sum_probs=3.0
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 008137 31 ALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIG 110 (576)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~ 110 (576)
++.+++..+++......+...+..+.+.|+++..+. |++.+.+-++..+..++..++.+|..|-+.+-+|.++++++
T Consensus 5 l~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~---G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g 81 (539)
T PF03137_consen 5 LVFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQS---GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLG 81 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHH
Confidence 445566666777788888888999999999999999 99999999999999999999999988888999999999999
Q ss_pred HHHHHhcc--------------------------------------------------hHHHHHHHHHHHHhhhhhhhhh
Q 008137 111 AIIMAIAP--------------------------------------------------QPWVIILGRIFVGLGVGMASMT 140 (576)
Q Consensus 111 ~~~~~~~~--------------------------------------------------~~~~l~~~R~l~G~~~g~~~~~ 140 (576)
++++++=+ -+..++++.++.|+|....++.
T Consensus 82 ~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tL 161 (539)
T PF03137_consen 82 SLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTL 161 (539)
T ss_dssp ----------------------------------------------------------------------SSS-------
T ss_pred HHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccc
Confidence 99887610 0466889999999999999999
Q ss_pred HHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------------------chhHHHHHHhHHHHHH
Q 008137 141 APLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP---------------------GTWRWMLGVAGLPAVV 199 (576)
Q Consensus 141 ~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~---------------------~~Wr~~f~v~~~~~~~ 199 (576)
..+|+-|..++++-+.++|++.+...+|..+|+++++.+...+ |.|-.-|++.+++.++
T Consensus 162 G~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l 241 (539)
T PF03137_consen 162 GITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFL 241 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876432 1255556677777777
Q ss_pred HHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhH
Q 008137 200 QFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLY 279 (576)
Q Consensus 200 ~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (576)
..+.++.+|++-+...+..+.++.++ ++... ...+ .....+.........+++.+..+.+++|+. +
T Consensus 242 ~aipl~~FPk~lp~~~~~~~~~~~~~--~~~~~-----~~~~--~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~-----f 307 (539)
T PF03137_consen 242 SAIPLFFFPKKLPGTSERQEEKESSE--RKEED-----SDKD--SFKDPKSKKSFGKSIKDFPKALKRLLTNPV-----F 307 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHcCCccCCCcccccchhhhhh--cchhh-----hhhh--cccccccccchhhhhhhHHHHHHHHhcChH-----H
Confidence 77777778765332210000000000 00000 0000 000000000011223444566667776664 4
Q ss_pred HHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHH-HHhHHHHHHHHHHHHhhcccC--ChHHHHHHHHHHHHH
Q 008137 280 AGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSL-VTSGLNALGSIVSMAFVDKYG--RRRLMIVSMFGLSSC 356 (576)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ig~~~~g~l~dk~g--rr~~~~~~~~~~~~~ 356 (576)
....+...........+..+.|.|++.....+...+.++.. +...++++|.+++|++.+|++ .|..+.+..+...++
T Consensus 308 ~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~ 387 (539)
T PF03137_consen 308 MCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVS 387 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHH
Confidence 44555555566667888889999999876667666666554 334466789999999999874 445554444444444
Q ss_pred HHH
Q 008137 357 LVA 359 (576)
Q Consensus 357 ~~~ 359 (576)
.++
T Consensus 388 ~~~ 390 (539)
T PF03137_consen 388 VIL 390 (539)
T ss_dssp ---
T ss_pred HHH
Confidence 443
No 118
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.66 E-value=7.4e-15 Score=160.59 Aligned_cols=187 Identities=16% Similarity=0.128 Sum_probs=143.2
Q ss_pred hhhhhHHHHHHHHH-HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH---HHhcc
Q 008137 43 YDTGVISGALLYIK-EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAII---MAIAP 118 (576)
Q Consensus 43 ~~~~~~~~~~~~i~-~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~---~~~~~ 118 (576)
.....+...+|.+. ++++.+..+. ++..+...++..++.++.|+++||+|||+.+.++.++..++.+. ...++
T Consensus 264 ~~~~~~~~~~p~~l~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~ 340 (490)
T PRK10642 264 VTYYMLLTYMPSYLSHNLHYSEDHG---VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSN 340 (490)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444455667655 5678776665 77888889999999999999999999999988887654433322 22345
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHH
Q 008137 119 QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAV 198 (576)
Q Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~ 198 (576)
+...++++|++.|++.+........++.|.+|++.|+.++++......++..++|.+.+++.+..++|+.++++..++++
T Consensus 341 ~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~ 420 (490)
T PRK10642 341 VIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAV 420 (490)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 67788889999999888777888888999999999999999744444555677888888877655458888877777777
Q ss_pred HHHHHHhhccCChhHHhhc-----CCHHHHHHHHHHhCC
Q 008137 199 VQFGLMMMLPESPRWLYRQ-----NKVDEARAILEKIYP 232 (576)
Q Consensus 199 ~~~~~~~~l~esp~~l~~~-----~~~~~~~~~l~~i~~ 232 (576)
+.++..+++||+|+++.++ ++.+++++.+.+++.
T Consensus 421 i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 421 IGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred HHHHHHHHhccccCCCCCCccccccchhhHHHHhhcccc
Confidence 7777777789999987654 888899998888763
No 119
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.64 E-value=2.4e-13 Score=139.45 Aligned_cols=352 Identities=16% Similarity=0.098 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchH-HHHHHHHHHHHHHHHHHhcch--H-HHHHHHHHHHHhhhhhhhhhHHH
Q 008137 68 LQELIVSMAVAGAIFGAGFGGWINDRFGRKI-SLLGADVLFFIGAIIMAIAPQ--P-WVIILGRIFVGLGVGMASMTAPL 143 (576)
Q Consensus 68 ~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~-~~~~~~~~~~i~~~~~~~~~~--~-~~l~~~R~l~G~~~g~~~~~~~~ 143 (576)
+.+...++..+..++-+++.|.++|..|+|| .+.....+..+++.+..++++ + +..+++-.+..++.....+.-.+
T Consensus 59 ~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds 138 (438)
T COG2270 59 YWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDS 138 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhh
Confidence 4499999999999999999999999999765 455555566666677777655 4 44456678888888888888999
Q ss_pred HHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH--HHhcC---------------CCchhHHHHHHhHHHHHHHHHHH-h
Q 008137 144 YISEASPAKIRGALVSANGFLITGGQFLAYLIN--LAFTK---------------APGTWRWMLGVAGLPAVVQFGLM-M 205 (576)
Q Consensus 144 ~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~--~~l~~---------------~~~~Wr~~f~v~~~~~~~~~~~~-~ 205 (576)
++.+..++++-++..+.-.....+|..+.-++. ..... ..-+=|..+.+.++--++..+.+ +
T Consensus 139 ~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~ 218 (438)
T COG2270 139 MLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMIL 218 (438)
T ss_pred HhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHh
Confidence 999999887777776655555555554433332 11111 11136777877777666665554 4
Q ss_pred hccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHH
Q 008137 206 MLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQ 285 (576)
Q Consensus 206 ~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (576)
..++.++- .....+. . .. ..++++.+.++..+++.. ..+.+.
T Consensus 219 ~v~~~~~~---~~~~~~~--l----------~~------------------g~k~L~~t~k~i~~~~~i-----~~FLiA 260 (438)
T COG2270 219 NVHDAEKI---SSPPPTA--L----------RN------------------GFKELKSTFKEIRGRKNL-----VLFLIA 260 (438)
T ss_pred cccccccc---cccchHH--H----------HH------------------HHHHHHHHHHHHhcccch-----HHHHHH
Confidence 44544320 0000000 0 00 011122444555444422 223333
Q ss_pred HHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Q 008137 286 VAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFF 365 (576)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~ 365 (576)
.++..-+.++.......|-....+.+..+..++.....+.+++|+++.|++.||+|.|+++..+.++..+..+.......
T Consensus 261 ~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~ 340 (438)
T COG2270 261 RFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG 340 (438)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc
Confidence 33344455666666777777444447778888888899999999999999999999998888777666655554333311
Q ss_pred HhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccc
Q 008137 366 QAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFI 445 (576)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (576)
T Consensus 341 -------------------------------------------------------------------------------- 340 (438)
T COG2270 341 -------------------------------------------------------------------------------- 340 (438)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhH
Q 008137 446 SGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGS-AGTFL 524 (576)
Q Consensus 446 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~-~~~~~ 524 (576)
......+.++...+..+.....-++..++.|++.-++.+|+++..++...+++|.+++.+.+..|. +..+.
T Consensus 341 --------~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~ 412 (438)
T COG2270 341 --------ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVL 412 (438)
T ss_pred --------cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHH
Confidence 011222223333333345556678899999999999999999999999999999999999998775 34455
Q ss_pred HHHHHHHHHHHHHHhhccCCCC
Q 008137 525 LFAGFSLLGLVAIYLLVPETKG 546 (576)
Q Consensus 525 ~~~~~~~i~~~~~~~~~~~~~~ 546 (576)
...++.+++++.. +..|+.++
T Consensus 413 ~i~vll~iGl~~L-~~v~~~~~ 433 (438)
T COG2270 413 SIIVLLLIGLLLL-LRVKVPGR 433 (438)
T ss_pred HHHHHHHhhHhhE-EeecCCCC
Confidence 5555555565553 44554433
No 120
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.55 E-value=6e-14 Score=124.70 Aligned_cols=136 Identities=25% Similarity=0.412 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcc
Q 008137 73 VSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAK 152 (576)
Q Consensus 73 ~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~ 152 (576)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 44567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHh-hccC
Q 008137 153 IRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMM-MLPE 209 (576)
Q Consensus 153 ~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~-~l~e 209 (576)
+|+++.++.+....+|..+++.+.+.+.+..+ |++.|++.++..++..+..+ ..||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999988776 99999998887777665543 3444
No 121
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.53 E-value=6.4e-11 Score=122.08 Aligned_cols=333 Identities=12% Similarity=0.030 Sum_probs=211.6
Q ss_pred HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccC-----chHHH-HHHHHHHHHHHHHHHhc-----c-----
Q 008137 55 IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFG-----RKISL-LGADVLFFIGAIIMAIA-----P----- 118 (576)
Q Consensus 55 i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~G-----rr~~~-~~~~~~~~i~~~~~~~~-----~----- 118 (576)
+..|++.+..-. +.+.++..+.... .+.+|+.+|+.+ ||..+ ..|.++...+..+..++ .
T Consensus 6 MIvEL~vpA~lv---~~lval~~~~ap~-R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~ 81 (403)
T PF03209_consen 6 MIVELGVPAWLV---ALLVALHYLVAPL-RVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQS 81 (403)
T ss_pred HHHHhccHHHHH---HHHHHHHHHHHHH-HHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 456777765555 8888888887765 899999999999 87544 45666666655554442 2
Q ss_pred ---h-HH--HHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 008137 119 ---Q-PW--VIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGV 192 (576)
Q Consensus 119 ---~-~~--~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v 192 (576)
. .+ ...+.-.+.|+|.+.......++++|..|+++|+++.++...+.-+|.+++..+.+.+.+.+..-|..-.+
T Consensus 82 ~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~ 161 (403)
T PF03209_consen 82 SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVI 161 (403)
T ss_pred ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 1 22 33456688999999999999999999999999999999999999999999999999888876645544444
Q ss_pred hHHH--HHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcc
Q 008137 193 AGLP--AVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFG 270 (576)
Q Consensus 193 ~~~~--~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (576)
.+.. .++..++-.+=.|.+.. .... ..+.........+++...
T Consensus 162 ~~~a~i~~~l~~ia~wg~E~r~~-~~~~----------------------------------~~~~~~~~f~~a~~~~~~ 206 (403)
T PF03209_consen 162 QGVALIALLLNLIALWGQEPRRS-RRAA----------------------------------AAERPRPPFREAWRQVWA 206 (403)
T ss_pred HHHHHHHHHHHHHHHHhcccCCc-cccc----------------------------------CCCCCCccHHHHHHHHHh
Confidence 3332 22222222222232110 0000 000011112244455555
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhc-ccCChHHHHHH
Q 008137 271 NKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVD-KYGRRRLMIVS 349 (576)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d-k~grr~~~~~~ 349 (576)
++.-++- +..+.+ ....++.--..+-.|--++.+.+..++..++.....+.++|..+.|++.. |.++++...++
T Consensus 207 ~~~a~~f-~~fl~l----~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G 281 (403)
T PF03209_consen 207 SPQARRF-FVFLFL----GTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALG 281 (403)
T ss_pred CCChhHH-HHHHHH----HHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 5544432 221111 11122222222223333455568888888888999999999988888776 67888888899
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccc
Q 008137 350 MFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDE 429 (576)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (576)
+...++++.++.......
T Consensus 282 ~~~~~~~f~lii~a~~~~-------------------------------------------------------------- 299 (403)
T PF03209_consen 282 CLLGALAFALIILAGPLG-------------------------------------------------------------- 299 (403)
T ss_pred HHHHHHHHHHHHHHHhcc--------------------------------------------------------------
Confidence 999998888777664321
Q ss_pred cccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHH
Q 008137 430 KSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLT 509 (576)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~ 509 (576)
..|......++++++.+..... ..+..-++.+++..|+.+|.-.....+...++..+
T Consensus 300 ----------------------~~~~~~~~~~l~G~g~G~f~vg-als~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~ 356 (403)
T PF03209_consen 300 ----------------------SPWLFRPGVFLLGLGNGLFTVG-ALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFL 356 (403)
T ss_pred ----------------------cchHHHHHHHHHHHhhhHHHHH-HHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 1244444444444443322222 22445677778889999999988888888888888
Q ss_pred HHHHHHh
Q 008137 510 FLTLTEA 516 (576)
Q Consensus 510 ~~~l~~~ 516 (576)
.|.+.|.
T Consensus 357 GG~~~D~ 363 (403)
T PF03209_consen 357 GGALRDL 363 (403)
T ss_pred HHHHHHH
Confidence 8877664
No 122
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.51 E-value=1.2e-12 Score=147.88 Aligned_cols=140 Identities=18% Similarity=0.103 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhcc
Q 008137 70 ELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEAS 149 (576)
Q Consensus 70 g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~ 149 (576)
.+...+..++..++.++.|+++||+|||++++++.++++++.++.+++++...+++++++.|++.++.++....+++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44466777899999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhhccCCh
Q 008137 150 PAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESP 211 (576)
Q Consensus 150 ~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp 211 (576)
|+++|++++|+.++...+|.+++|++++.+... +...+|++.+++.++..++.+++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999987654 256788888887777777777788874
No 123
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.49 E-value=1.1e-12 Score=140.39 Aligned_cols=164 Identities=15% Similarity=0.117 Sum_probs=132.9
Q ss_pred hHHHHHHHHHHhhccchh-----hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc---
Q 008137 47 VISGALLYIKEDFRDVEK-----KTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP--- 118 (576)
Q Consensus 47 ~~~~~~~~i~~~~~~~~~-----~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--- 118 (576)
......+...++.+.+.. .....+.+.++..++..++.++.|++.||+|||+++.++.++.+++..+.....
T Consensus 226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~ 305 (418)
T TIGR00889 226 ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEY 305 (418)
T ss_pred HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcch
Confidence 344555666666664431 112348999999999999999999999999999999999999998877776642
Q ss_pred -hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHhcCCCc-----hhHHHHH
Q 008137 119 -QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANG-FLITGGQFLAYLINLAFTKAPG-----TWRWMLG 191 (576)
Q Consensus 119 -~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~-~~~~~G~~l~~~l~~~l~~~~~-----~Wr~~f~ 191 (576)
+++.+++.+++.|++.+...+....+++|++|+++|++++++.+ ...++|.++||+++|.+.+..+ +|++.|.
T Consensus 306 ~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~ 385 (418)
T TIGR00889 306 FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWL 385 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHH
Confidence 34667788999999999989999999999999999999999997 6788999999999999887642 3999999
Q ss_pred HhHHHHHHHHHH-HhhccCC
Q 008137 192 VAGLPAVVQFGL-MMMLPES 210 (576)
Q Consensus 192 v~~~~~~~~~~~-~~~l~es 210 (576)
+.+++.++..++ +++++|+
T Consensus 386 ~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 386 FFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHHHHHhCCc
Confidence 988887776655 5556766
No 124
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.49 E-value=1.2e-11 Score=132.46 Aligned_cols=366 Identities=16% Similarity=0.125 Sum_probs=228.0
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhh--HHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 008137 29 KLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKT--WLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVL 106 (576)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~ 106 (576)
.+.....+-.+..++.........+.....++...... ...+.......+...+.++..|.++||+|||..+.+....
T Consensus 22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~ 101 (463)
T KOG2816|consen 22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFG 101 (463)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHH
Confidence 34444445455555555555556666665555322211 1113333344678888999999999999999999999999
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhh--hhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137 107 FFIGAIIMAIAPQPWVIILGRIFVGLG--VGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG 184 (576)
Q Consensus 107 ~~i~~~~~~~~~~~~~l~~~R~l~G~~--~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~ 184 (576)
..+..+...+.. +|.+ + +.|+. .+.......++++|....++|....++.......+..++|.+++.+....+
T Consensus 102 ~~l~~~~~~~~~-~~~~-~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~ 176 (463)
T KOG2816|consen 102 TILPALCLLFQG-YWFF-L---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG 176 (463)
T ss_pred HHHhHHHHHHHH-HHHh-h---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 888888877755 3333 3 44442 344567788899999999999999999999999999999999999988776
Q ss_pred hhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHH
Q 008137 185 TWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMIS 263 (576)
Q Consensus 185 ~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (576)
.-.+|.+..+..++..+. +.++||+-....++ + +. .+..... ........ .
T Consensus 177 -~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~---~-~~--~~~~~~~------------------~~~~~~~~---~ 228 (463)
T KOG2816|consen 177 -IALVFLIAAASGILSLLYMLLFLPESLQEKERS---D-AT--LRELTPG------------------SLDSSHVA---D 228 (463)
T ss_pred -chHHHHHHHHHHHHHHHHHhhccccccCccccc---c-cc--ccccCCC------------------cccchhhh---h
Confidence 788888888888887766 55678874311111 0 00 0000000 00000000 1
Q ss_pred HhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHH-HhhcccCC
Q 008137 264 RLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSM-AFVDKYGR 342 (576)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g-~l~dk~gr 342 (576)
..+...+ ..-++..+.......+..........-..+.++......+....+.+.........++.++.. .+...++.
T Consensus 229 ~~~~~~~-~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~ 307 (463)
T KOG2816|consen 229 AFQSLTK-VGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGE 307 (463)
T ss_pred hhhhhcc-cCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111111 111121222222222211111111111224455555555677777555666666777776666 77788898
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCC
Q 008137 343 RRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLP 422 (576)
Q Consensus 343 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (576)
|+++..|...-.+....+++....
T Consensus 308 ~~~i~lGl~~~~~~~~~~af~~~~-------------------------------------------------------- 331 (463)
T KOG2816|consen 308 KRLISLGLLSEFLQLLLFAFATET-------------------------------------------------------- 331 (463)
T ss_pred hhHhhHHHHHHHHHHHHHHHhccc--------------------------------------------------------
Confidence 888888888888887777766431
Q ss_pred CcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHH
Q 008137 423 GACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTS 502 (576)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g 502 (576)
|....... ...+.....|...++.+...+++.+|.+.++...+..++
T Consensus 332 -------------------------------w~~~~~~v--~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~ 378 (463)
T KOG2816|consen 332 -------------------------------WMMFAAGV--VVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLS 378 (463)
T ss_pred -------------------------------hhhhHHHH--HHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHh
Confidence 33222222 222333445566678888889999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 008137 503 NLIVSLTFLTLTEAL 517 (576)
Q Consensus 503 ~~~~~~~~~~l~~~~ 517 (576)
+.++|.+.+.++..+
T Consensus 379 ~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 379 GVVSPALYGNIFALT 393 (463)
T ss_pred hhhhHHHHHHHHHHH
Confidence 999999999886543
No 125
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.47 E-value=1.2e-12 Score=136.73 Aligned_cols=152 Identities=16% Similarity=0.052 Sum_probs=129.8
Q ss_pred hhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchH--HHH
Q 008137 46 GVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP--WVI 123 (576)
Q Consensus 46 ~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~l 123 (576)
.......+.+.++++.++.+. +++.+.+.++..+++++.|++.||+|||+.+.++.++..++.++..+.++. ..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T TIGR00890 222 LLLIGLYKPYGQSLGLSDGFL---VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLF 298 (377)
T ss_pred HHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHH
Confidence 334445566778888777666 889999999999999999999999999999999999999988888777643 335
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHH
Q 008137 124 ILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQF 201 (576)
Q Consensus 124 ~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~ 201 (576)
++..++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+ |++.|++.+++.++.+
T Consensus 299 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 299 LATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHhc
Confidence 5678889998888888888899999999999999999999999999999999999988776 9999999887776643
No 126
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.47 E-value=1.1e-12 Score=140.33 Aligned_cols=141 Identities=15% Similarity=0.118 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhc
Q 008137 69 QELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEA 148 (576)
Q Consensus 69 ~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~ 148 (576)
.|++.++..++..++++++|++.||+|||+.+.++.++.+++.++.+++++++.+++.+++.|++.+...+....++.|.
T Consensus 264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 343 (420)
T PRK09528 264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLN 343 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999988888888999999
Q ss_pred cCcchhhHHHHH-HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHH-HhhccCC
Q 008137 149 SPAKIRGALVSA-NGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGL-MMMLPES 210 (576)
Q Consensus 149 ~~~~~R~~~~~~-~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~-~~~l~es 210 (576)
+|++.|+...+. +++...+|.++++++.|++.+..+ ||..|.+.+++.++..+. ++.++++
T Consensus 344 ~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 344 FDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred cCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999998877655 677888999999999999999877 999999988877665554 4444444
No 127
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.46 E-value=4.6e-12 Score=134.81 Aligned_cols=162 Identities=15% Similarity=0.030 Sum_probs=136.8
Q ss_pred hhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHH
Q 008137 46 GVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIIL 125 (576)
Q Consensus 46 ~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 125 (576)
..+....|.+.++.|.+..+. +++.+...++..++.++.|++.||+|||+.+..+.+...++.++..+.++.+.+.+
T Consensus 237 ~~~~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (406)
T PRK11551 237 YFLLNWLPSLLVGQGLSRSQA---GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLL 313 (406)
T ss_pred HHHHHHHHHHHHhCCCChhhh---hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344445678888888887777 89999999999999999999999999999998887777777777777888888888
Q ss_pred HHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHh
Q 008137 126 GRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMM 205 (576)
Q Consensus 126 ~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~ 205 (576)
.-++.|++.++..+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..++|...+++.+...++..+..+
T Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 314 AGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 88999998888888899999999999999999999999999999999999999988766688888877776666655544
Q ss_pred hccCC
Q 008137 206 MLPES 210 (576)
Q Consensus 206 ~l~es 210 (576)
.+.++
T Consensus 394 ~~~~~ 398 (406)
T PRK11551 394 LLVSR 398 (406)
T ss_pred HHhcc
Confidence 44333
No 128
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.44 E-value=6.2e-12 Score=129.70 Aligned_cols=166 Identities=22% Similarity=0.305 Sum_probs=147.2
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhh-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchH-HHHHHHHHHHHHHHHH
Q 008137 37 GGLLFGYDTGVISGALLYIKEDF-RDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKI-SLLGADVLFFIGAIIM 114 (576)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~-~~~~~~~~~~i~~~~~ 114 (576)
..+.............|.+.++. +.++.+. +++.+...++..++.++.|++.||+|||+ .+.++..+..++.++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (352)
T cd06174 183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA---GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLL 259 (352)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34445555566666777777665 7777776 99999999999999999999999999999 9999999999999999
Q ss_pred HhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhH
Q 008137 115 AIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAG 194 (576)
Q Consensus 115 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~ 194 (576)
.+.++.+.+.+..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+ |++.+++.+
T Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~ 338 (352)
T cd06174 260 ALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILA 338 (352)
T ss_pred HHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988776 999999999
Q ss_pred HHHHHHHHHHhh
Q 008137 195 LPAVVQFGLMMM 206 (576)
Q Consensus 195 ~~~~~~~~~~~~ 206 (576)
++.++..+..+.
T Consensus 339 ~~~~i~~i~~~~ 350 (352)
T cd06174 339 ALALLAALLLLL 350 (352)
T ss_pred HHHHHHHHHhee
Confidence 988887766544
No 129
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.43 E-value=7.1e-12 Score=133.07 Aligned_cols=157 Identities=13% Similarity=0.103 Sum_probs=129.8
Q ss_pred HHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 008137 48 ISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILG 126 (576)
Q Consensus 48 ~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 126 (576)
+....|. +.++++.+..+. +++.+...++..++.++.|+++||+|||+.+..+.+...+......+.++++.+++.
T Consensus 235 ~~~~~p~~l~~~~~~~~~~~---g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 311 (393)
T PRK15011 235 YIINMPLFIINELHLPEKLA---GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGL 311 (393)
T ss_pred HHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3344555 456788887777 888888888888899999999999999998887776666655555667788888899
Q ss_pred HHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhh
Q 008137 127 RIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMM 206 (576)
Q Consensus 127 R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~ 206 (576)
|++.+++.|...+....+..|.+|+ +|++++++++....+|..+++.+++.+.+..+ |+..|++.+++.++.++..++
T Consensus 312 ~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 312 QLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHh
Confidence 9999998888888888889999975 59999999999999999999999999988776 999999988888887777766
Q ss_pred ccC
Q 008137 207 LPE 209 (576)
Q Consensus 207 l~e 209 (576)
+||
T Consensus 390 ~~~ 392 (393)
T PRK15011 390 IKD 392 (393)
T ss_pred hcC
Confidence 664
No 130
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.41 E-value=8.2e-12 Score=132.72 Aligned_cols=159 Identities=19% Similarity=0.194 Sum_probs=132.7
Q ss_pred hhHHHHHHHHHHhhccchh-hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHH
Q 008137 46 GVISGALLYIKEDFRDVEK-KTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVII 124 (576)
Q Consensus 46 ~~~~~~~~~i~~~~~~~~~-~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~ 124 (576)
....+.++.+..+.+.+.. .....+.+.++..++..++.++.|++.||+|||+.+..+.++..++.+...+.++.+.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
T PRK09874 236 GSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLG 315 (408)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3445556665555432222 222346777788888999999999999999999999999988888888888888899999
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHH
Q 008137 125 LGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLM 204 (576)
Q Consensus 125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~ 204 (576)
+.+++.|++.+...+...+++.+..|+++|++.+++++....+|..+||.+++.+.+..+ |++.|++.+++.++..+..
T Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 316 ILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred HHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988877 9999999988888776654
Q ss_pred h
Q 008137 205 M 205 (576)
Q Consensus 205 ~ 205 (576)
+
T Consensus 395 ~ 395 (408)
T PRK09874 395 W 395 (408)
T ss_pred H
Confidence 3
No 131
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.41 E-value=1.1e-11 Score=131.52 Aligned_cols=159 Identities=16% Similarity=0.209 Sum_probs=133.5
Q ss_pred hhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHH
Q 008137 46 GVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIIL 125 (576)
Q Consensus 46 ~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 125 (576)
......+|.+.++.+. .+. ++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++.++.++.+.+++
T Consensus 233 ~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (399)
T PRK05122 233 GTIATFITLYYAARGW--DGA---ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALI 307 (399)
T ss_pred HHHHHHHHHHHHHccc--ccc---hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3344445555555554 233 56677888899999999999999999999999999998988888888889888889
Q ss_pred HHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHh
Q 008137 126 GRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMM 205 (576)
Q Consensus 126 ~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~ 205 (576)
.+++.|++.+...+.....+.|.+|+++|+++.++++....+|..+++++.+.+.+..+ |++.|++.+++.++.++..+
T Consensus 308 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 386 (399)
T PRK05122 308 GAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTW 386 (399)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888999999999999999999999999999999999988776 99999998888887776655
Q ss_pred hccCC
Q 008137 206 MLPES 210 (576)
Q Consensus 206 ~l~es 210 (576)
++++.
T Consensus 387 ~~~~~ 391 (399)
T PRK05122 387 LLYRR 391 (399)
T ss_pred Hhccc
Confidence 55543
No 132
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.40 E-value=1.9e-11 Score=129.22 Aligned_cols=158 Identities=14% Similarity=0.018 Sum_probs=136.9
Q ss_pred hhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchH
Q 008137 41 FGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP 120 (576)
Q Consensus 41 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~ 120 (576)
.......+....|.+.+++|.+..+. |++.+...++..++.++.+++.||+|+|+.+.++.++.++..++.++++++
T Consensus 217 ~~~~~~~~~~~~~~~l~~~g~s~~~~---g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~ 293 (382)
T TIGR00902 217 IQGAHAAYYGFSAIYWQAAGISASAT---GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAF 293 (382)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHhHH---HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence 33444445556677778899888888 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHH
Q 008137 121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANG-FLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVV 199 (576)
Q Consensus 121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~-~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~ 199 (576)
+.+++.++++|++.|...+....++.+. |+++|++++++++ ...++|..+++.++|.+.+..+ + ..|++.++++++
T Consensus 294 ~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~ 370 (382)
T TIGR00902 294 PLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAA 370 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHH
Confidence 9999999999999999999999999998 9999999999986 5678999999999999999886 6 567777777666
Q ss_pred HHHHH
Q 008137 200 QFGLM 204 (576)
Q Consensus 200 ~~~~~ 204 (576)
.++++
T Consensus 371 ~~~~~ 375 (382)
T TIGR00902 371 AFFLI 375 (382)
T ss_pred HHHHH
Confidence 55443
No 133
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=99.40 E-value=2.7e-11 Score=130.06 Aligned_cols=360 Identities=16% Similarity=0.132 Sum_probs=213.9
Q ss_pred HHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc---C--chHHHHHHHHHHHHHHHHHHhcc----
Q 008137 48 ISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF---G--RKISLLGADVLFFIGAIIMAIAP---- 118 (576)
Q Consensus 48 ~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~---G--rr~~~~~~~~~~~i~~~~~~~~~---- 118 (576)
..+..|.+.++++.++.+. ..+.+...+...+ -+++|.++|-+ | ||+-++++.++..++.+..+..+
T Consensus 9 ~~~~~~~l~~~l~ls~~~~---~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~ 84 (433)
T PF03092_consen 9 RLAIYPFLKDDLGLSPAQL---QRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASES 84 (433)
T ss_pred HHHHHHHHHHHcCCCHHHH---HHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3455678889999999888 7777777777776 68999999976 3 55666677777766666555543
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccC--cchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHH
Q 008137 119 QPWVIILGRIFVGLGVGMASMTAPLYISEASP--AKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLP 196 (576)
Q Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~--~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~ 196 (576)
+.....++-++..+|.+.....+-+++.|... ++.||..++.......+|.+++..++|.+.+..+ +|+.|.+.+++
T Consensus 85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~ 163 (433)
T PF03092_consen 85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAAL 163 (433)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHH
Confidence 46667777788999999999999999999983 3447889999999999999999999999988877 99999998887
Q ss_pred HHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhh
Q 008137 197 AVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRR 276 (576)
Q Consensus 197 ~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (576)
..+.++..+++.|+.+ .+.+.+.....+ ++.+.... ..++.....++.++.+..++
T Consensus 164 ~~l~~~~~~~~~~e~~-~~~~~~~~~~~~------------~~~~~~~~-----------~~~~~~~~l~~~~~~~~i~~ 219 (433)
T PF03092_consen 164 PLLMLIVALFLLEERK-VRPADEVFSFGK------------EEVPCLFG-----------SFREQLSELWRALQQRAIWQ 219 (433)
T ss_pred HHHHHHHHHHhhhhcc-ccccchhhcccc------------cccchhhH-----------HHHHHHHHHHHHHhhhHHHH
Confidence 7776665444433211 000000000000 00000000 01112245556666655555
Q ss_pred hhHHHHHHHHHHHHHhhHH-HHhhhHHHHHhhc--CCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHH
Q 008137 277 GLYAGVTVQVAQQFVGINT-VMYYSPTIVQFAG--FASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGL 353 (576)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~ 353 (576)
.......+..+.... ... ..++. ....+ +.+....+.+..+..++.++|..+......+..-|+++.+..++.
T Consensus 220 ~~~~~~~~~~~~~~~-~~a~~fy~~---~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~ 295 (433)
T PF03092_consen 220 PILFFIFFFNLPPSI-SSASSFYFQ---TDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVS 295 (433)
T ss_pred HHHHHHHHHHhccCC-CCccEEEEE---eccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 443111110000000 001 11111 11122 125666666667777777777777776666666677765555443
Q ss_pred HHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccc
Q 008137 354 SSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTD 433 (576)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (576)
.+..+.-.... ..+|-
T Consensus 296 ~~~~l~~~~lv--------------------------------------------------------------~~~n~-- 311 (433)
T PF03092_consen 296 VLASLFDLLLV--------------------------------------------------------------TRWNL-- 311 (433)
T ss_pred HHHhcccEEEE--------------------------------------------------------------EEEee--
Confidence 33322111000 00000
Q ss_pred cccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 008137 434 TLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTL 513 (576)
Q Consensus 434 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l 513 (576)
..|.|++.-+. .--.+......+.+-|. ..+.+|+.|+..-|+..++...+.++|..++..+...+
T Consensus 312 -----------~~Gi~d~~f~l--gd~~l~~~~~~i~~mP~-lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l 377 (433)
T PF03092_consen 312 -----------DLGIPDQWFAL--GDTILEEVIGMIAFMPS-LVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFL 377 (433)
T ss_pred -----------eeCcCCeEEEE--EhHHHHHHHHHHHHHHH-HHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01112221111 11111112222222222 35678999999999999999999999999999999888
Q ss_pred HHhhc
Q 008137 514 TEALG 518 (576)
Q Consensus 514 ~~~~g 518 (576)
.+..|
T Consensus 378 ~~~~~ 382 (433)
T PF03092_consen 378 MELFG 382 (433)
T ss_pred HHHcC
Confidence 88765
No 134
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.37 E-value=4.3e-11 Score=125.48 Aligned_cols=154 Identities=15% Similarity=0.153 Sum_probs=128.5
Q ss_pred HHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Q 008137 51 ALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIF 129 (576)
Q Consensus 51 ~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l 129 (576)
..|. +.++++.++.+. +++.+...+...++.++.|++.||+|||+.+.++.++..+..+...+.++.+.+.+.+++
T Consensus 221 ~~~~~~~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (375)
T TIGR00899 221 NMPLLIIHELGLPDKLA---GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLL 297 (375)
T ss_pred hhHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 456778877776 888877777788889999999999999999988887776666666677888888889999
Q ss_pred HHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhhccC
Q 008137 130 VGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPE 209 (576)
Q Consensus 130 ~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~e 209 (576)
.|++.+...+....++.|..|+ +|++++++++....+|..+++.+.+.+.+..+ |+..|++.++..++..+..++++|
T Consensus 298 ~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 298 NAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHheecC
Confidence 9999998888888999999875 56799999999999999999999999988776 999999998888877776665543
No 135
>PRK12382 putative transporter; Provisional
Probab=99.36 E-value=3e-11 Score=127.98 Aligned_cols=154 Identities=14% Similarity=0.213 Sum_probs=131.4
Q ss_pred hhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHH
Q 008137 46 GVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIIL 125 (576)
Q Consensus 46 ~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 125 (576)
.......|.+.++.+.+ +. ++..+.+.++..+++++.|++.||+|+|+.+.++..+.+++.++..+.++.+.+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (392)
T PRK12382 233 AVIGTFVSLYFASKGWA--MA---GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALA 307 (392)
T ss_pred hHHHHHHHHHHHhcCCc--hh---HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 33444555555665543 23 56677788888999999999999999999999999999999888888888888889
Q ss_pred HHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHh
Q 008137 126 GRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMM 205 (576)
Q Consensus 126 ~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~ 205 (576)
.+++.|++.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+.+.+..+ |++.|.+.+++.++..+..+
T Consensus 308 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 308 GAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888899999999999999999999999999999999999998877 99999999888777666544
No 136
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.35 E-value=6.6e-11 Score=126.58 Aligned_cols=160 Identities=13% Similarity=0.140 Sum_probs=135.5
Q ss_pred HHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 008137 48 ISGALLYIKED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILG 126 (576)
Q Consensus 48 ~~~~~~~i~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 126 (576)
+....|.+.++ +|.+.... +++.+...++..++.++.+++.||.++++.+..+.++.+++.++.++.++.+.+.++
T Consensus 242 ~~~~~p~~~~~~~g~~~~~~---g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (417)
T PRK10489 242 VRVLYPALADEVWQMGAAQI---GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLC 318 (417)
T ss_pred HHHhhHHHHHhccCCChhHh---HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 34456777666 88877776 999999999999999999999999888888888888888888888888988888889
Q ss_pred HHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHH-HHHHh
Q 008137 127 RIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQ-FGLMM 205 (576)
Q Consensus 127 R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~-~~~~~ 205 (576)
.++.|++.+...+...+++.|..|++.|++++++++....+|..+|+.+.+.+.+..+ ++..+++.++..++. .+.++
T Consensus 319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 319 LALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHH
Confidence 9999999988888888999999999999999999999999999999999999998876 788887776665554 44456
Q ss_pred hccCCh
Q 008137 206 MLPESP 211 (576)
Q Consensus 206 ~l~esp 211 (576)
.+++.+
T Consensus 398 ~~~~~~ 403 (417)
T PRK10489 398 VLGELR 403 (417)
T ss_pred hccccc
Confidence 666654
No 137
>TIGR00895 2A0115 benzoate transport.
Probab=99.32 E-value=6.1e-11 Score=124.85 Aligned_cols=171 Identities=17% Similarity=0.112 Sum_probs=128.1
Q ss_pred HHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Q 008137 286 VAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFF 365 (576)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~ 365 (576)
.+..........++.|.+.++.+. +..+.+.+.....++.+++.++.|+++||+|||+.+..+.++..++.+++.....
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 104 (398)
T TIGR00895 26 MLMDGYDLAAMGFAAPAISAEWGL-DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATN 104 (398)
T ss_pred HHHHHHHHHHHHhhHHHHhhccCC-CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccc
Confidence 333334445566677888777766 6677788888888889999999999999999999999888877777665543311
Q ss_pred HhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccc
Q 008137 366 QAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFI 445 (576)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (576)
T Consensus 105 -------------------------------------------------------------------------------- 104 (398)
T TIGR00895 105 -------------------------------------------------------------------------------- 104 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHH
Q 008137 446 SGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLL 525 (576)
Q Consensus 446 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~ 525 (576)
.+..++...+.+.+.+ ...+...++..|.+|++.|+++.|+.+....+|..+++.+.+.+.+..||+..+++
T Consensus 105 -------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~ 176 (398)
T TIGR00895 105 -------VTQLLILRFLAGLGLG-GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV 176 (398)
T ss_pred -------hHHHHHHHHHHhcccc-cchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence 1222333333333332 33456668889999999999999999999999999999999999999999989888
Q ss_pred HHHHHHHHHHHHHhhccCCC
Q 008137 526 FAGFSLLGLVAIYLLVPETK 545 (576)
Q Consensus 526 ~~~~~~i~~~~~~~~~~~~~ 545 (576)
.+++.++..++.+.+.||+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 177 GGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred hhhHHHHHHHHHHHhCCCCC
Confidence 87777776666667777764
No 138
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.32 E-value=7.4e-10 Score=112.57 Aligned_cols=272 Identities=13% Similarity=0.046 Sum_probs=171.8
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 008137 36 IGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMA 115 (576)
Q Consensus 36 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~ 115 (576)
++...+++. +|..-.+-++++.++.+. +.+....+....+...+.|.++||+|||+..+.-.++.+++++. -
T Consensus 45 La~~aDWLQ----GpY~Y~LY~~yg~~~~qI---a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k 116 (354)
T PF05631_consen 45 LAMAADWLQ----GPYLYALYESYGFSEHQI---AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-K 116 (354)
T ss_pred HHHHHHHhh----cchhHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-H
Confidence 444444444 333334456889988888 99999999999999999999999999999999999999998864 4
Q ss_pred hcchHHHHHHHHHHHHhhhhhhhhhHHHH-HHhccC----cchhhHHHHHHH-HHHHHHHHHHHHHHHHhcCCCc-hhHH
Q 008137 116 IAPQPWVIILGRIFVGLGVGMASMTAPLY-ISEASP----AKIRGALVSANG-FLITGGQFLAYLINLAFTKAPG-TWRW 188 (576)
Q Consensus 116 ~~~~~~~l~~~R~l~G~~~g~~~~~~~~~-i~e~~~----~~~R~~~~~~~~-~~~~~G~~l~~~l~~~l~~~~~-~Wr~ 188 (576)
..++++.++++|++.|++....+..-.++ +.|+-. ++..+..++... ...++-.+++.+++.++.+..+ +-..
T Consensus 117 ~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~va 196 (354)
T PF05631_consen 117 HSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVA 196 (354)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcc
Confidence 56899999999999999999998888776 566532 222233333222 2223334455555656555443 2477
Q ss_pred HHHHhHHHHHHHHHHHh-hccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhh
Q 008137 189 MLGVAGLPAVVQFGLMM-MLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKG 267 (576)
Q Consensus 189 ~f~v~~~~~~~~~~~~~-~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (576)
+|.....+.++..+++. .-+|+......+ .+.. ++..+.++.
T Consensus 197 PF~~a~~~l~~~~~~I~~~W~ENyg~~~~~---~~~~----------------------------------~~~~~a~~~ 239 (354)
T PF05631_consen 197 PFDAAIVLLAVAAVLILKTWPENYGDTSSS---SSLS----------------------------------GSFREAWRA 239 (354)
T ss_pred hHHHHHHHHHHHHHHHHhcccccCCCcccc---cchH----------------------------------HHHHHHHHH
Confidence 88888877776666544 345543210000 0000 000022223
Q ss_pred hcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhc-ccCChHHH
Q 008137 268 AFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVD-KYGRRRLM 346 (576)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d-k~grr~~~ 346 (576)
+.++ ++++.....+.++....+..+..|.|.+- ......--|++...+.+..++|+.+...+.. +......+
T Consensus 240 i~~d----~ril~LG~~qslFE~smy~FVflWtPaL~---~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l 312 (354)
T PF05631_consen 240 ILSD----PRILLLGLIQSLFEGSMYLFVFLWTPALD---PDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLL 312 (354)
T ss_pred HHcC----chhHHHHHHHHHHHHHHHHheeeeeceec---CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3333 33455666677777777777788888876 2212334677778788888999988866554 43333444
Q ss_pred HHHHHHHHHHHHH
Q 008137 347 IVSMFGLSSCLVA 359 (576)
Q Consensus 347 ~~~~~~~~~~~~~ 359 (576)
...+.+.++++.+
T Consensus 313 ~~v~~~aa~~l~~ 325 (354)
T PF05631_consen 313 RYVFAVAAVSLAI 325 (354)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 139
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.31 E-value=1.1e-10 Score=126.83 Aligned_cols=170 Identities=14% Similarity=0.110 Sum_probs=125.9
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHH-HHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008137 33 SAGIGGLLFGYDTGVISGALLYI-KEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA 111 (576)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~ 111 (576)
.+++..++...........+|.+ .+++|.+..+. ++..+...++..++.+++|+++||+|||+.+.....+..++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a---~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~ 338 (467)
T PRK09556 262 LLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDA---INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIF 338 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34444444444444555666754 46688888887 889999999999999999999999999987766554444433
Q ss_pred H--HHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHH-HHHHHHHHHHHhcC-------
Q 008137 112 I--IMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITG-GQFLAYLINLAFTK------- 181 (576)
Q Consensus 112 ~--~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~-G~~l~~~l~~~l~~------- 181 (576)
. .....++.+.+.+.+++.|++..+..........|.+|++.||.+.|+.+....+ |.+++|.+.|.+.+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~ 418 (467)
T PRK09556 339 TLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTP 418 (467)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccc
Confidence 2 2334456777778888888755444444446677999999999999999988886 77999999999988
Q ss_pred -----CCchhHHHHHHhHHHHHHHHHHHhh
Q 008137 182 -----APGTWRWMLGVAGLPAVVQFGLMMM 206 (576)
Q Consensus 182 -----~~~~Wr~~f~v~~~~~~~~~~~~~~ 206 (576)
..+ |+..|++.++..++..+..++
T Consensus 419 ~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 419 IFGYTLTG-WAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred cccccccC-hHHHHHHHHHHHHHHHHHHHH
Confidence 344 999999887777766555443
No 140
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.31 E-value=2.1e-11 Score=132.11 Aligned_cols=161 Identities=14% Similarity=0.031 Sum_probs=130.2
Q ss_pred HhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CchHHHHH--HHHHHHHHHHHH
Q 008137 39 LLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF--GRKISLLG--ADVLFFIGAIIM 114 (576)
Q Consensus 39 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~--Grr~~~~~--~~~~~~i~~~~~ 114 (576)
++...........+|.+.++++.+..+. +++.++..++..+++++.|+++||. ++|+...+ +.++.+++.+++
T Consensus 251 ~l~~~~~~~~~~~l~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~ 327 (455)
T TIGR00892 251 VIMFLGFFAPIIFLVPYAKDKGVDEYEA---AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLC 327 (455)
T ss_pred HHHHHHccchHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444456677778888887777 9999999999999999999999984 34443333 334445555667
Q ss_pred HhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhH
Q 008137 115 AIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAG 194 (576)
Q Consensus 115 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~ 194 (576)
.+.++++.+++.+++.|++.+...+...+++.|.+|+++|++++++++....+|.++||.+++.+.+..++|++.|++.+
T Consensus 328 ~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~ 407 (455)
T TIGR00892 328 ALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASG 407 (455)
T ss_pred HHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhh
Confidence 77889999999999999999999999999999999999999999999999999999999999999887766999999988
Q ss_pred HHHHHHHH
Q 008137 195 LPAVVQFG 202 (576)
Q Consensus 195 ~~~~~~~~ 202 (576)
++.++..+
T Consensus 408 ~~~li~~~ 415 (455)
T TIGR00892 408 SIVVSAGL 415 (455)
T ss_pred HHHHHHHH
Confidence 87665544
No 141
>PRK03545 putative arabinose transporter; Provisional
Probab=99.31 E-value=2.2e-10 Score=121.38 Aligned_cols=149 Identities=13% Similarity=0.151 Sum_probs=120.8
Q ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHH
Q 008137 52 LLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA-IIMAIAPQPWVIILGRIFV 130 (576)
Q Consensus 52 ~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~-~~~~~~~~~~~l~~~R~l~ 130 (576)
.|.+.+.+|.+..+. +++.+...++..+++++.|++.||+|||.... +..+..++. .+..+.++.+.+++..++.
T Consensus 229 ~~~l~~~~g~s~~~~---~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 304 (390)
T PRK03545 229 EPFVQQVAGLSENFA---TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFW 304 (390)
T ss_pred HHHHHHhcCCCccHH---HHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 344555578777777 88999999999999999999999999887544 444444443 3445567888888899999
Q ss_pred HhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhh
Q 008137 131 GLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMM 206 (576)
Q Consensus 131 G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~ 206 (576)
|++.+...+.....+.+..| ++|++++++++....+|..+|++++|.+.+..+ ++..|++.+++.++.++....
T Consensus 305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHHH
Confidence 99988777777888888876 588999999999999999999999999999887 999999998888776665433
No 142
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.29 E-value=5.3e-11 Score=128.15 Aligned_cols=177 Identities=11% Similarity=0.028 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHH
Q 008137 279 YAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLV 358 (576)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~ 358 (576)
+...++..+..+........+.|.+.++.+. +..+.+.+.....++..++.++.|++.||+|||+++..+.++..++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~ 103 (434)
T PRK11663 25 LITMYLGYALFYFTRKSFNAAMPEMLADLGL-SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINI 103 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHHhhHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHH
Confidence 3334444444444444566778888888777 677788888888999999999999999999999999988888888877
Q ss_pred HHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccc
Q 008137 359 ALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSD 438 (576)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (576)
+.......
T Consensus 104 ~~~~~~~~------------------------------------------------------------------------ 111 (434)
T PRK11663 104 LFGFSSSL------------------------------------------------------------------------ 111 (434)
T ss_pred HHHHHhHH------------------------------------------------------------------------
Confidence 66554221
Q ss_pred ccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008137 439 EHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALG 518 (576)
Q Consensus 439 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g 518 (576)
+...+...+.+.+.+.. .+....+..|.+|+++|++++|+.+....+|..+++.+.+.+.+..|
T Consensus 112 ---------------~~l~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 175 (434)
T PRK11663 112 ---------------WAFALLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG 175 (434)
T ss_pred ---------------HHHHHHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 22222223333333322 34455778899999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHhhccCC
Q 008137 519 SAGTFLLFAGFSLLGLVAIYLLVPET 544 (576)
Q Consensus 519 ~~~~~~~~~~~~~i~~~~~~~~~~~~ 544 (576)
|+..|++.+++.++..++..++++|+
T Consensus 176 w~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 176 WRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999888877766555555556654
No 143
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.28 E-value=2e-10 Score=121.30 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 008137 47 VISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILG 126 (576)
Q Consensus 47 ~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 126 (576)
.....+|.+.++.+.+.... +++.+...++..+++++.|++.||+|+|+.+..+..+..++.+... + ...+...
T Consensus 218 ~~~~~lp~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~ 291 (381)
T PRK03633 218 SLYGLMPLYLNHQGMSDASI---GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPA 291 (381)
T ss_pred HHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHH
Confidence 33445777777778777776 8899999999999999999999999999999888888777665443 2 2344557
Q ss_pred HHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhh
Q 008137 127 RIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMM 206 (576)
Q Consensus 127 R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~ 206 (576)
+++.|++.+...|.....+.|..|+++++.+.+.++...++|..+||.++|.+.+..+ |++.|.+.+.+.++..+.++.
T Consensus 292 ~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 292 LFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHh
Confidence 7888988888889999999999998888888888888999999999999999988877 999999988888766655544
Q ss_pred c
Q 008137 207 L 207 (576)
Q Consensus 207 l 207 (576)
.
T Consensus 371 ~ 371 (381)
T PRK03633 371 K 371 (381)
T ss_pred c
Confidence 3
No 144
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.28 E-value=1.1e-10 Score=124.86 Aligned_cols=180 Identities=12% Similarity=-0.015 Sum_probs=134.2
Q ss_pred hHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHH
Q 008137 278 LYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCL 357 (576)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~ 357 (576)
.+....+.+..++.......+..|.+.++.+. +..+.++......++..++.+..|++.||+|||+++..+.++..++.
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~ 87 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGL-SATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAS 87 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCC-CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 44445555555555556666677766666655 77888888889999999999999999999999999998888888877
Q ss_pred HHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccc
Q 008137 358 VALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCS 437 (576)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (576)
++..+...
T Consensus 88 ~~~~~~~~------------------------------------------------------------------------ 95 (412)
T TIGR02332 88 TATMFATG------------------------------------------------------------------------ 95 (412)
T ss_pred HHHHHhcC------------------------------------------------------------------------
Confidence 77665421
Q ss_pred cccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH--
Q 008137 438 DEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE-- 515 (576)
Q Consensus 438 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~-- 515 (576)
.+..++.-.+.+.+.+ +..+....+..|.+|++.|++++|+.+....+|..+++.+.+.+.+
T Consensus 96 ---------------~~~l~~~r~l~G~~~~-~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (412)
T TIGR02332 96 ---------------PESLYLLRILVGIAEA-GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALD 159 (412)
T ss_pred ---------------HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1222333333333333 2345555678999999999999999999999999999999998875
Q ss_pred ----hhccchhhHHHHHHHHHHHHHHHhhccCCCC
Q 008137 516 ----ALGSAGTFLLFAGFSLLGLVAIYLLVPETKG 546 (576)
Q Consensus 516 ----~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 546 (576)
..||+..|++.++..++..++.++++||+++
T Consensus 160 ~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 160 GLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3589999999888887777777777888764
No 145
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.28 E-value=6.7e-11 Score=121.49 Aligned_cols=182 Identities=13% Similarity=0.070 Sum_probs=148.1
Q ss_pred hhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHH
Q 008137 274 VRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGL 353 (576)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~ 353 (576)
+|..++..+.+.....+..--.+..-.|.+.++.+. +..+.+.+.+..++..-++-++.|.++||.+.|+.+..+.++.
T Consensus 26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~l-sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils 104 (448)
T COG2271 26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGL-SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence 355566666666666666666777788888887775 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccc
Q 008137 354 SSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTD 433 (576)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (576)
+++.+++++....
T Consensus 105 ai~nil~Gfs~s~------------------------------------------------------------------- 117 (448)
T COG2271 105 AIVNILFGFSPSL------------------------------------------------------------------- 117 (448)
T ss_pred HHHHHHHhhhhHH-------------------------------------------------------------------
Confidence 9999999887531
Q ss_pred cccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHH--H
Q 008137 434 TLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTF--L 511 (576)
Q Consensus 434 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~--~ 511 (576)
+...++..+-+.+-+.+. |.....++.-+|++.||+..++-|++.++|+.+.|++. +
T Consensus 118 --------------------~~~~~l~~lng~fQg~Gw-pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la 176 (448)
T COG2271 118 --------------------FLFAVLWVLNGWFQGMGW-PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLA 176 (448)
T ss_pred --------------------HHHHHHHHHHHHHhcCCC-cHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHH
Confidence 333444444444444444 44446668899999999999999999999999999999 8
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHhhccCC
Q 008137 512 TLTEALGSAGTFLLFAGFSLLGLVAIYLLVPET 544 (576)
Q Consensus 512 ~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 544 (576)
.+..+.+|+..|++.++++++..++.++..+++
T Consensus 177 ~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 177 FFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999888887777654
No 146
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.27 E-value=4.3e-11 Score=125.67 Aligned_cols=158 Identities=17% Similarity=0.090 Sum_probs=122.2
Q ss_pred HHhhhhhhhhHHHHHHHHH-HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH--HHH
Q 008137 38 GLLFGYDTGVISGALLYIK-EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA--IIM 114 (576)
Q Consensus 38 ~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~--~~~ 114 (576)
.+.............|.+. ++++.+..+. +.+.+...++..++.++.|+++||+|||+.+..+..+..+.. ++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 304 (394)
T TIGR00883 228 VIATTTTFYLITTYLPTYLTQTLGLSANSA---LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLM 304 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhHH---HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455556667765 6677777776 888999999999999999999999999998776555444333 222
Q ss_pred Hh--cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHH-HHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 008137 115 AI--APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSA-NGFLITGGQFLAYLINLAFTKAPGTWRWMLG 191 (576)
Q Consensus 115 ~~--~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~-~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~ 191 (576)
.+ .++.+.+.+..++.|++.+...+...+++.|.+|+++|+++.++ ++....+|..++|.+++.+.+..+.|++.++
T Consensus 305 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~ 384 (394)
T TIGR00883 305 ALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGY 384 (394)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHH
Confidence 22 25677777888999999999999999999999999999999997 4566778999999999999887766888877
Q ss_pred HhHHHHH
Q 008137 192 VAGLPAV 198 (576)
Q Consensus 192 v~~~~~~ 198 (576)
...+..+
T Consensus 385 ~~~~~~l 391 (394)
T TIGR00883 385 YLAALAL 391 (394)
T ss_pred HHHHHHH
Confidence 7666544
No 147
>PRK10054 putative transporter; Provisional
Probab=99.27 E-value=1.3e-10 Score=123.64 Aligned_cols=175 Identities=14% Similarity=0.031 Sum_probs=127.7
Q ss_pred HHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHH
Q 008137 282 VTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALA 361 (576)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~ 361 (576)
+....+....+......+.|.++++..+.+..+.++......+..+++.++.|+++||+|||+++..+.++..++.+++.
T Consensus 12 l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~ 91 (395)
T PRK10054 12 LLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIP 91 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHH
Confidence 33444445556667777778877665444788888888888888999999999999999999999888887777766555
Q ss_pred HHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccc
Q 008137 362 VVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHR 441 (576)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (576)
+....
T Consensus 92 ~~~~~--------------------------------------------------------------------------- 96 (395)
T PRK10054 92 LVNNV--------------------------------------------------------------------------- 96 (395)
T ss_pred HHhHH---------------------------------------------------------------------------
Confidence 44221
Q ss_pred cccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008137 442 TYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAG 521 (576)
Q Consensus 442 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~ 521 (576)
+..++...+...... ...+....+..|..|++.|+++.|+.+....+|.+++|.+.+.+.+ .+++.
T Consensus 97 ------------~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~ 162 (395)
T PRK10054 97 ------------TLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINL 162 (395)
T ss_pred ------------HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCc
Confidence 222222222222222 2344556777899999999999999999999999999999998875 68888
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCC
Q 008137 522 TFLLFAGFSLLGLVAIYLLVPETK 545 (576)
Q Consensus 522 ~~~~~~~~~~i~~~~~~~~~~~~~ 545 (576)
+|++.+++.++..+...++.|+.+
T Consensus 163 ~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 163 PFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 999888887777666555565543
No 148
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.27 E-value=4.9e-10 Score=119.34 Aligned_cols=164 Identities=15% Similarity=-0.010 Sum_probs=124.9
Q ss_pred HHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHH-HHHHHHHHHHHHHHh
Q 008137 38 GLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLL-GADVLFFIGAIIMAI 116 (576)
Q Consensus 38 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~-~~~~~~~i~~~~~~~ 116 (576)
.++............|.+.++++.+..+. +++.+...++..++.++.|++.||+|||+.+. .+.+..+++.+...+
T Consensus 231 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~ 307 (402)
T TIGR00897 231 RIINTIGLFGFAVFLPMFVAELGFSTSEW---LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYY 307 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHH---HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 33344444555667788888888887776 88888899999999999999999999988664 333334443333322
Q ss_pred -----cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 008137 117 -----APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLG 191 (576)
Q Consensus 117 -----~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~ 191 (576)
.++.+.+.+..++.|++.+...+ ....+.|..| ++|+++.|+.+....+|..++|.+.+.+.+..+ |+..|+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~ 384 (402)
T TIGR00897 308 IPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVW 384 (402)
T ss_pred HHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHH
Confidence 34677778889999998887655 4456677654 689999999999999999999999999998877 999999
Q ss_pred HhHHHHHHHHHHHhhc
Q 008137 192 VAGLPAVVQFGLMMML 207 (576)
Q Consensus 192 v~~~~~~~~~~~~~~l 207 (576)
+.+++.++..+...++
T Consensus 385 ~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 385 IFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9888877766665443
No 149
>PRK09952 shikimate transporter; Provisional
Probab=99.26 E-value=4.6e-10 Score=121.03 Aligned_cols=160 Identities=13% Similarity=0.132 Sum_probs=117.0
Q ss_pred HHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh---c-chHHH
Q 008137 48 ISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAI---A-PQPWV 122 (576)
Q Consensus 48 ~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~-~~~~~ 122 (576)
.....|. +.++++.+.... ..+..+..+...++.++.|+++||+|||+.+..+.++..++.+.... . ++.+.
T Consensus 269 ~~~~~~~y~~~~~g~s~~~~---~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (438)
T PRK09952 269 VTAFALNYSTQNLGLPRELF---LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWI 345 (438)
T ss_pred HHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence 3344444 456677766544 44555556677888899999999999999988887766555433322 2 23445
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHhcCCC-chhHHHHHHhHHHHHHH
Q 008137 123 IILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANG-FLITGGQFLAYLINLAFTKAP-GTWRWMLGVAGLPAVVQ 200 (576)
Q Consensus 123 l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~-~~~~~G~~l~~~l~~~l~~~~-~~Wr~~f~v~~~~~~~~ 200 (576)
+++..++.|++.+...+...+++.|.+|++.|+.+.++.+ .+..+|..++|.+.+++.+.. ++|+..+...++..++.
T Consensus 346 ~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~ 425 (438)
T PRK09952 346 VFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLIS 425 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 5556677788888888888999999999999988888854 445589999999999987743 35999888888888777
Q ss_pred HHHHhhccCC
Q 008137 201 FGLMMMLPES 210 (576)
Q Consensus 201 ~~~~~~l~es 210 (576)
.+..+.++|+
T Consensus 426 ~v~~~~~~~~ 435 (438)
T PRK09952 426 AMTALLMKDN 435 (438)
T ss_pred HHHHHHcccc
Confidence 7776666664
No 150
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.25 E-value=4.6e-10 Score=117.53 Aligned_cols=167 Identities=16% Similarity=0.123 Sum_probs=121.2
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHH-HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchH--HH------HHHH
Q 008137 34 AGIGGLLFGYDTGVISGALLYIK-EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKI--SL------LGAD 104 (576)
Q Consensus 34 ~~l~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~--~~------~~~~ 104 (576)
..+..++.......+....|.+. ++++.+..+. +++.+...++..++.++.|++.||+|||+ .. ..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 296 (399)
T TIGR00893 220 LALGQFLVNIGLGFFLTWFPTYLVQERGLSILEA---GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAG 296 (399)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 34444555555556666667655 5577777777 89999999999999999999999999995 11 1111
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137 105 VLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG 184 (576)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~ 184 (576)
++..+........++.+......++.+.+.+ ..+...+++.|.+|+++|++++++.+....+|..+++.+.+.+.+..+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g 375 (399)
T TIGR00893 297 LVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG 375 (399)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence 1112222222223345555555555555555 788999999999999999999999999999999999999999998776
Q ss_pred hhHHHHHHhHHHHHHHHHHH
Q 008137 185 TWRWMLGVAGLPAVVQFGLM 204 (576)
Q Consensus 185 ~Wr~~f~v~~~~~~~~~~~~ 204 (576)
+|++.|++.++..++..+..
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 376 SFAGALMVVAALALIGALSY 395 (399)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 69999998888777665554
No 151
>PRK03699 putative transporter; Provisional
Probab=99.25 E-value=1.7e-10 Score=122.54 Aligned_cols=170 Identities=15% Similarity=0.026 Sum_probs=136.7
Q ss_pred HHHHhhhhhhhhHHHHHHHHH-HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008137 36 IGGLLFGYDTGVISGALLYIK-EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM 114 (576)
Q Consensus 36 l~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~ 114 (576)
++.++.......+....|.+. ++++.+..+. +++.+.+.++..++.++.|++.||+|||+.+.....+..+...+.
T Consensus 212 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~---~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~ 288 (394)
T PRK03699 212 IAALLYILAQLTFISWVPEYAQKKFGMSLEDA---GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLF 288 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHh---hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 333333334444555677766 5678888777 999999999999999999999999999999988888777777777
Q ss_pred HhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhH
Q 008137 115 AIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAG 194 (576)
Q Consensus 115 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~ 194 (576)
...++.+.+.+..++.|++.+..++...++..|..| +++++..+.......+|..++|.+.+.+.+..+ |+..+++.+
T Consensus 289 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~ 366 (394)
T PRK03699 289 VNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTAN 366 (394)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhH
Confidence 777888778888899999888888888888888776 446778888888899999999999999998877 999999988
Q ss_pred HHHHHHHHHHhhccCC
Q 008137 195 LPAVVQFGLMMMLPES 210 (576)
Q Consensus 195 ~~~~~~~~~~~~l~es 210 (576)
++.++..+....+++.
T Consensus 367 ~~~~~~~~~~~~~~~~ 382 (394)
T PRK03699 367 GLYAVVFVMCILLGFV 382 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8877776665555443
No 152
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.25 E-value=1.1e-10 Score=125.81 Aligned_cols=180 Identities=17% Similarity=0.052 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 008137 28 MKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLF 107 (576)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~ 107 (576)
+..+....+..+........+....|.+.++++.+..+. ++......++..++.++.|+++||+|||+.+.++.++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 359 (481)
T TIGR00879 283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHA---FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGM 359 (481)
T ss_pred HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 334444444444444444555666788888888877666 88889999999999999999999999999999998888
Q ss_pred HHHHHHHHh-----cc------hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 008137 108 FIGAIIMAI-----AP------QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLIN 176 (576)
Q Consensus 108 ~i~~~~~~~-----~~------~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~ 176 (576)
.++.++.++ .+ +...+....++.+....+..+....++.|.+|+++|++++++.+....+|.++++.+.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~ 439 (481)
T TIGR00879 360 AICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLF 439 (481)
T ss_pred HHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777662 11 2333333333333333334466677889999999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHhHHHHHHHHHHH-hhccCCh
Q 008137 177 LAFTKAPGTWRWMLGVAGLPAVVQFGLM-MMLPESP 211 (576)
Q Consensus 177 ~~l~~~~~~Wr~~f~v~~~~~~~~~~~~-~~l~esp 211 (576)
+.+.+..+ |++.|++.++++++..+.. ++.||++
T Consensus 440 ~~~~~~~~-~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 440 PTMLESIG-VGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHhcC-ccceehhHHHHHHHHHHHHheecccCC
Confidence 99887766 9999999888877776664 4456653
No 153
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.25 E-value=5.1e-10 Score=118.36 Aligned_cols=151 Identities=13% Similarity=0.046 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Q 008137 48 ISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGR 127 (576)
Q Consensus 48 ~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R 127 (576)
.....|.+.++.|.+..+. |.+.+...++..+..++.|++.||+|+|+.+.++.++.+++.++.+++++++.+++..
T Consensus 224 ~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (382)
T PRK11128 224 YYGFSAIYWQAAGYSASTI---GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQ 300 (382)
T ss_pred HHHHHHHHHHHCCCCHhHH---HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3344556667788877776 8899999999999999999999999999999999999999888888899999999999
Q ss_pred HHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHH
Q 008137 128 IFVGLGVGMASMTAPLYISEASPAKIRGALVSANG-FLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLM 204 (576)
Q Consensus 128 ~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~-~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~ 204 (576)
++.|++.+...+....++.+. ++++++++++.++ ...++|..+|+.++|.+.+..+ + ..|+..++++++.+...
T Consensus 301 ~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~~~ 375 (382)
T PRK11128 301 ILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALFIR 375 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999887 5666788899886 5567888999999999999877 6 46666666665554443
No 154
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.24 E-value=1.7e-10 Score=121.29 Aligned_cols=172 Identities=17% Similarity=0.066 Sum_probs=128.7
Q ss_pred HHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 008137 287 AQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQ 366 (576)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~ 366 (576)
.....+........|.+.++.+. +..+.+.......++..++.++.|+++||+|||+.+..+.++..++.++......
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~- 92 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAADLST-PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN- 92 (385)
T ss_pred HHHHHHHHHhcccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc-
Confidence 33344445555566777777776 6777888888889999999999999999999999999888887777766554311
Q ss_pred hhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccccccccccc
Q 008137 367 AAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFIS 446 (576)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (576)
T Consensus 93 -------------------------------------------------------------------------------- 92 (385)
T TIGR00710 93 -------------------------------------------------------------------------------- 92 (385)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHH
Q 008137 447 GCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLF 526 (576)
Q Consensus 447 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~ 526 (576)
.+...+...+.+.+.+ ...+....+..|.+|++.|++..|+.+....+|..+++.+.+.+.+..+|+..+++.
T Consensus 93 ------~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 165 (385)
T TIGR00710 93 ------IETLLVLRFVQAFGAS-AGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL 165 (385)
T ss_pred ------HHHHHHHHHHHHcchh-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 1222333333322222 223455678899999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhhccCCCCC
Q 008137 527 AGFSLLGLVAIYLLVPETKGL 547 (576)
Q Consensus 527 ~~~~~i~~~~~~~~~~~~~~~ 547 (576)
+++.++..+..++..||++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~ 186 (385)
T TIGR00710 166 SLAGILLSALIFFILPETLPY 186 (385)
T ss_pred HHHHHHHHHHHHHhCCCCCCC
Confidence 888887777766667776543
No 155
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.24 E-value=3e-10 Score=120.68 Aligned_cols=164 Identities=18% Similarity=0.066 Sum_probs=128.5
Q ss_pred hhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc-hHH
Q 008137 43 YDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP-QPW 121 (576)
Q Consensus 43 ~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~ 121 (576)
.........+|.+.++++.+..+. +...+.+.++..++.++.|++.||+|||+.+.++..+..++..+....+ +..
T Consensus 219 ~~~~~~~~~lp~~l~~~g~s~~~a---g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 295 (393)
T PRK09705 219 GGYASLIAWLPAFYIEIGASAQYS---GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLP 295 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCChhhh---hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHH
Confidence 344445556677777788887777 9999999999999999999999999999999988888777766554333 322
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHH
Q 008137 122 VIILGRIFVGLGVGMASMTAPLYISEASP-AKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQ 200 (576)
Q Consensus 122 ~l~~~R~l~G~~~g~~~~~~~~~i~e~~~-~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~ 200 (576)
.+ .-++.|++.+...+.......+.++ +++|++..++.+....++..++|.+.+++.+..++|+..|.+..+.+++.
T Consensus 296 ~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~ 373 (393)
T PRK09705 296 VL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGL 373 (393)
T ss_pred HH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 22 2356788888888887777777775 67899999999999999999999999999998777889888877776665
Q ss_pred HHH-HhhccCCh
Q 008137 201 FGL-MMMLPESP 211 (576)
Q Consensus 201 ~~~-~~~l~esp 211 (576)
.+. .++.||++
T Consensus 374 ~~~~~~~~~~~~ 385 (393)
T PRK09705 374 MIITLRFAPARF 385 (393)
T ss_pred HHHHHHhccccc
Confidence 555 55567764
No 156
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.24 E-value=8e-11 Score=122.97 Aligned_cols=165 Identities=12% Similarity=0.052 Sum_probs=124.7
Q ss_pred hhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008137 292 GINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHA 371 (576)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (576)
....+....|.+.++.+. +..+.+.+.....++..++.++.|+++||+|||+.+..+.++..++.+++.....
T Consensus 10 ~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------ 82 (379)
T TIGR00881 10 VRKNFALAMPYLVEEIGL-SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS------ 82 (379)
T ss_pred hHHhhhhhhHHHHHHhCC-CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh------
Confidence 345556667777776666 6778888888889999999999999999999999999998888888777665422
Q ss_pred CCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCc
Q 008137 372 PTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSS 451 (576)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 451 (576)
T Consensus 83 -------------------------------------------------------------------------------- 82 (379)
T TIGR00881 83 -------------------------------------------------------------------------------- 82 (379)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHH-HHHHHHHHhhccchhhHHHHHHH
Q 008137 452 FGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVS-LTFLTLTEALGSAGTFLLFAGFS 530 (576)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~-~~~~~l~~~~g~~~~~~~~~~~~ 530 (576)
.+..++...+.+.+.+ ...+....+..|.+|++.|+...++.+....+|..+++ .+.+.+.+..+|+..|++.+++.
T Consensus 83 -~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (379)
T TIGR00881 83 -LWVMAALWALNGIFQG-MGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIA 160 (379)
T ss_pred -HHHHHHHHHHHHhhcc-ccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 1333333333333332 33456667889999999999999999999999999999 46666677788988888888877
Q ss_pred HHHHHHHHhhccCCC
Q 008137 531 LLGLVAIYLLVPETK 545 (576)
Q Consensus 531 ~i~~~~~~~~~~~~~ 545 (576)
++..+..+++.||++
T Consensus 161 ~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 161 IIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHheeeCCCc
Confidence 776666666666654
No 157
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=99.22 E-value=5.3e-09 Score=109.11 Aligned_cols=308 Identities=12% Similarity=0.070 Sum_probs=190.4
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 008137 30 LALSAGIGGLLFGYDTGVISGALLYIKED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFF 108 (576)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~ 108 (576)
....+|+-.|+..+.-+- ..+.|.+.+. .|.+.++.. .-+.-+..-++....++...++|..|.|++++++.+...
T Consensus 6 ~~~llc~~gf~~~frPsE-Pfl~~yL~~~~kn~T~~qv~--~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i 82 (412)
T PF01770_consen 6 ITLLLCLFGFFKEFRPSE-PFLTPYLTGPDKNFTEEQVN--NEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYI 82 (412)
T ss_pred HHHHHHHHHHHHhcCCCC-ccchHHHcCCccCCCHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 444555555554443221 2233444443 566666653 567777788888899999999999999999999999999
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhH
Q 008137 109 IGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG-TWR 187 (576)
Q Consensus 109 i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~-~Wr 187 (576)
+..++.-+.++...+-+..++.|++.+. ..+-.+|+-...|+++-.++.+....+.-+|.+++.+++-.+....+ +.+
T Consensus 83 ~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~ 161 (412)
T PF01770_consen 83 ITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYF 161 (412)
T ss_pred HHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 9999999999999999999999998885 66678888888898888999999999999999999999888776332 466
Q ss_pred HHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCch-hhhHHHH-HHHHHHHhhhhhhcccchhhHHHh
Q 008137 188 WMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPAD-QVEEEVN-LLKQSVENEKAEEGLIGKDMISRL 265 (576)
Q Consensus 188 ~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 265 (576)
....+......+.++..+++|..++...-+++..+... ..+....+ +..++.. ...+.............+..++++
T Consensus 162 ~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 240 (412)
T PF01770_consen 162 QLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDF 240 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHH
Confidence 67666666556666666778776543222211111000 00000000 0000000 000000000001111122445667
Q ss_pred hhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhh--cCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCCh
Q 008137 266 KGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFA--GFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRR 343 (576)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr 343 (576)
++..+++..+...++..+ ...++..+..|...+.++. .......-|..-....+.+.++++..|++..+..+.
T Consensus 241 ~~~y~~~~ll~WSlWWa~-----atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~ 315 (412)
T PF01770_consen 241 KSCYSNPRLLLWSLWWAF-----ATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW 315 (412)
T ss_pred HHHhcCchHHHHHHHHHH-----HHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH
Confidence 777777766554433333 3334556666666666655 112333446666777777888888899985555554
Q ss_pred HHHH
Q 008137 344 RLMI 347 (576)
Q Consensus 344 ~~~~ 347 (576)
.-+.
T Consensus 316 ~~l~ 319 (412)
T PF01770_consen 316 GELA 319 (412)
T ss_pred HHHH
Confidence 4333
No 158
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.21 E-value=6.4e-10 Score=115.59 Aligned_cols=130 Identities=15% Similarity=0.240 Sum_probs=117.4
Q ss_pred HHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcch-HHHHHHHH
Q 008137 50 GALLYIKED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQ-PWVIILGR 127 (576)
Q Consensus 50 ~~~~~i~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~-~~~l~~~R 127 (576)
...|.+.++ ++.+..+. +++.+...++..++.++.+++.||+|||+.+..+.++.+++.++..+.++ .+.+.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHY---GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLW 308 (365)
T ss_pred HHhHHHHHHHhCCchHHH---HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence 566777665 78777777 99999999999999999999999999999999988888888888888774 88888999
Q ss_pred HHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008137 128 IFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKA 182 (576)
Q Consensus 128 ~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~ 182 (576)
++.|++.+...+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+.
T Consensus 309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 309 FAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988764
No 159
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.21 E-value=4.6e-10 Score=122.72 Aligned_cols=146 Identities=16% Similarity=0.098 Sum_probs=116.1
Q ss_pred HHHHHHHHH-HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhc--chHHHHH
Q 008137 48 ISGALLYIK-EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIA--PQPWVII 124 (576)
Q Consensus 48 ~~~~~~~i~-~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~l~ 124 (576)
....+|.+. ++++.+..+. +++.+...++..++.++.|+++||+|||+++..+.++..++.++.... .+.+.+.
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~---g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTV---ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLG 370 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 445677776 5888888877 999999999999999999999999999999888877766665544433 3444555
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHH
Q 008137 125 LGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPA 197 (576)
Q Consensus 125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~ 197 (576)
+..++.|....+..+....++.|.+|+++|++++++.+....+|..+||.+.+.+.+..+ |+..+.+.+...
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~~~ 442 (496)
T PRK03893 371 LLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALASLSFSL 442 (496)
T ss_pred HHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHHHHH
Confidence 556665554444556777889999999999999999999999999999999999999887 988876655443
No 160
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.21 E-value=9.6e-10 Score=119.62 Aligned_cols=164 Identities=17% Similarity=0.091 Sum_probs=120.1
Q ss_pred hhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc--h-H
Q 008137 44 DTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP--Q-P 120 (576)
Q Consensus 44 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~-~ 120 (576)
.........|.+.++++.+.... .+......+...++.++.|++.||+|||+.++.+.++.+++.++.+... + .
T Consensus 286 ~~~~~~~~~p~i~~~~g~~~~~~---~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~ 362 (479)
T PRK10077 286 GINVVLYYAPEIFKTLGASTDIA---LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP 362 (479)
T ss_pred ChhHHHHHHHHHHHHcCCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcc
Confidence 33444556688888888776665 6666677888899999999999999999999999999888887765432 1 1
Q ss_pred -HHHHHHHHHHHhhhhhh-hhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhc------CCCchhHHHHHH
Q 008137 121 -WVIILGRIFVGLGVGMA-SMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT------KAPGTWRWMLGV 192 (576)
Q Consensus 121 -~~l~~~R~l~G~~~g~~-~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~------~~~~~Wr~~f~v 192 (576)
.....+.++.+.+.+.. .+....+++|.+|+++|+.++++.+....+|.++++.+.+.+. +..+ |++.|++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~ 441 (479)
T PRK10077 363 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWI 441 (479)
T ss_pred cHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHH
Confidence 12233444445444432 3667899999999999999999999999999988866655443 3444 8888988
Q ss_pred hHHHHHHHHHHH-hhccCCh
Q 008137 193 AGLPAVVQFGLM-MMLPESP 211 (576)
Q Consensus 193 ~~~~~~~~~~~~-~~l~esp 211 (576)
.++++++..+.. ++.||+.
T Consensus 442 ~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 442 YGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred HHHHHHHHHHHHHhccccCC
Confidence 887777666554 4566653
No 161
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.19 E-value=5.8e-10 Score=117.90 Aligned_cols=141 Identities=23% Similarity=0.176 Sum_probs=116.0
Q ss_pred HHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH-HHHhcchHHHHHHHH
Q 008137 50 GALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAI-IMAIAPQPWVIILGR 127 (576)
Q Consensus 50 ~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~R 127 (576)
..+|. +.++++.+..+. +++.+...++..++.++.|++.||+|||+.+.++.++..+..+ +....++.+.+.+..
T Consensus 259 ~~~~~~~~~~~g~s~~~~---~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (405)
T TIGR00891 259 DLLPTYLKADLGLSPHTV---ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGL 335 (405)
T ss_pred hhhHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 34454 446678887777 9999999999999999999999999999998888776533332 334456677777777
Q ss_pred HHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHh
Q 008137 128 IFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVA 193 (576)
Q Consensus 128 ~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~ 193 (576)
++.|++.++..+....++.|.+|+++|++++|+.+....+|..++|++.+.+.+..+.|+..+...
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~ 401 (405)
T TIGR00891 336 FFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL 401 (405)
T ss_pred HHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence 888888887888888999999999999999999999999999999999999998776677766553
No 162
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.18 E-value=2.1e-09 Score=116.30 Aligned_cols=160 Identities=21% Similarity=0.247 Sum_probs=139.3
Q ss_pred HHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCch--HHHHHHHHHHHHHHHHHHh--------c
Q 008137 48 ISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRK--ISLLGADVLFFIGAIIMAI--------A 117 (576)
Q Consensus 48 ~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr--~~~~~~~~~~~i~~~~~~~--------~ 117 (576)
+......-.++++.+..+. ..+.-+..+..++|++++|++.||+|.| +++.++++++.+..+...+ .
T Consensus 301 ~~~~~i~a~~~lg~s~~~l---~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~ 377 (477)
T PF11700_consen 301 ISFAGIYATEVLGMSTTQL---IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGL 377 (477)
T ss_pred HHHHHHHHHHhcCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence 3334444556899999888 7788888999999999999999999999 8999999888776666655 6
Q ss_pred chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHH
Q 008137 118 PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPA 197 (576)
Q Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~ 197 (576)
++.+.+.+.-++.|++.|...+.+.++.+|..|+++.+..+|++....-...++||++.+.+.+..++-|+.++...++.
T Consensus 378 ~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf 457 (477)
T PF11700_consen 378 KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLF 457 (477)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999998888999999888888
Q ss_pred HHHHHHHhhccCC
Q 008137 198 VVQFGLMMMLPES 210 (576)
Q Consensus 198 ~~~~~~~~~l~es 210 (576)
++.+++++.++.+
T Consensus 458 ~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 458 LIGLILLFFVDVE 470 (477)
T ss_pred HHHHHHHhhccch
Confidence 8877777666543
No 163
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.17 E-value=1.9e-09 Score=117.88 Aligned_cols=156 Identities=19% Similarity=0.248 Sum_probs=136.9
Q ss_pred hhhhHHHHHHHHHH-hhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHH
Q 008137 44 DTGVISGALLYIKE-DFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWV 122 (576)
Q Consensus 44 ~~~~~~~~~~~i~~-~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~ 122 (576)
....+..++|.+.+ .++.+.... |++.+++.+|..+|+++.+++.+|+++++.+..+.++++++.+..+++++.+.
T Consensus 233 ~~~a~~aLlPl~a~~~l~~~a~~y---Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~ 309 (524)
T PF05977_consen 233 FASAVWALLPLFARDVLGGGASGY---GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWL 309 (524)
T ss_pred hhhHHHHhhhHHHHHHhCCcHHHH---HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHH
Confidence 33444556787764 577776666 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHH
Q 008137 123 IILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFG 202 (576)
Q Consensus 123 l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~ 202 (576)
.++.-++.|++.........+.+.+..|++.|||.++++++....+..+|..+.|.+.+..+ -+..+.+.++..++..+
T Consensus 310 ~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~ 388 (524)
T PF05977_consen 310 ALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGAALLLSAL 388 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887 88888877765555444
Q ss_pred H
Q 008137 203 L 203 (576)
Q Consensus 203 ~ 203 (576)
+
T Consensus 389 ~ 389 (524)
T PF05977_consen 389 I 389 (524)
T ss_pred H
Confidence 4
No 164
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.17 E-value=5.2e-10 Score=118.52 Aligned_cols=179 Identities=12% Similarity=-0.024 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHH
Q 008137 279 YAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLV 358 (576)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~ 358 (576)
+........++..+........|.+.++.+. +..+.+.......++..++.++.|+++||+|||+.+..+.++..++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNA-SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence 3344455555555666666778888888776 666777777888888899999999999999999999988877777766
Q ss_pred HHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccc
Q 008137 359 ALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSD 438 (576)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (576)
++.....
T Consensus 84 ~~~~~~~------------------------------------------------------------------------- 90 (392)
T PRK10473 84 LCSLAET------------------------------------------------------------------------- 90 (392)
T ss_pred HHHHhCc-------------------------------------------------------------------------
Confidence 5543311
Q ss_pred ccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008137 439 EHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALG 518 (576)
Q Consensus 439 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g 518 (576)
.+..++...+.+.+.+ ...+....+..|.+|++.|++..++.+....++..++|.+.+.+.+..|
T Consensus 91 --------------~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g 155 (392)
T PRK10473 91 --------------SSLFLAGRFLQGIGAG-CCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP 155 (392)
T ss_pred --------------HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 0222222222222222 2233456788899999999999999999999999999999998888889
Q ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCC
Q 008137 519 SAGTFLLFAGFSLLGLVAIYLLVPETKG 546 (576)
Q Consensus 519 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 546 (576)
|+..+++.++++++..++.++..||++.
T Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 156 WQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9989999888888877776677777654
No 165
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.17 E-value=8.4e-10 Score=117.30 Aligned_cols=159 Identities=15% Similarity=0.037 Sum_probs=121.3
Q ss_pred hhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccc
Q 008137 298 YYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQI 377 (576)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (576)
...|.+.++.+. +..+.+.......++..++.++.|.++||+|||+.+..+.++.+++.++......
T Consensus 41 ~~l~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~------------ 107 (394)
T PRK10213 41 SLLTPMAQDLGI-SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANS------------ 107 (394)
T ss_pred hhHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHCh------------
Confidence 345667777766 6677777777888888999999999999999999999999988887766554321
Q ss_pred ccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHH
Q 008137 378 ESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAV 457 (576)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 457 (576)
.+..+
T Consensus 108 ---------------------------------------------------------------------------~~~l~ 112 (394)
T PRK10213 108 ---------------------------------------------------------------------------FSLLL 112 (394)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 13333
Q ss_pred HHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Q 008137 458 VFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAI 537 (576)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 537 (576)
+.-.+.+.+.+ ...+....++.|.+|++.|+.+.++......++..++|.+.+.+.+..||+..|++.++++++..++.
T Consensus 113 ~~r~l~G~~~g-~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~ 191 (394)
T PRK10213 113 IGRACLGLALG-GFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWI 191 (394)
T ss_pred HHHHHHHHhhH-HHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 33333333333 23455667788999999999999999999999999999999999999999999998887777666555
Q ss_pred HhhccCCC
Q 008137 538 YLLVPETK 545 (576)
Q Consensus 538 ~~~~~~~~ 545 (576)
+...||++
T Consensus 192 ~~~~p~~~ 199 (394)
T PRK10213 192 IKSLPSLP 199 (394)
T ss_pred HHHCCCCC
Confidence 55567643
No 166
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.16 E-value=8.2e-09 Score=112.97 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=122.3
Q ss_pred HHHHHHhhccchhhhHHHHHHH-HHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH---HHhc-chHHHHHHH
Q 008137 52 LLYIKEDFRDVEKKTWLQELIV-SMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAII---MAIA-PQPWVIILG 126 (576)
Q Consensus 52 ~~~i~~~~~~~~~~~~~~g~i~-s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~---~~~~-~~~~~l~~~ 126 (576)
.|.+.+++|.+..+. +++. +...++..++.+++|+++||+|+|+.+.++.++.+++.+. .+.. ++.+.+.+.
T Consensus 246 ~~~l~~~~G~s~~~~---g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~ 322 (491)
T PRK11010 246 TTFLIRGVGFDAGEV---GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAA 322 (491)
T ss_pred HHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 444566788888887 8887 4667899999999999999999998877766655554432 2333 455556666
Q ss_pred HHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhh
Q 008137 127 RIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMM 206 (576)
Q Consensus 127 R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~ 206 (576)
-+++.++.|...+...++..+..+++.++...++.+...++|..+++++.|.+.+..| |+..|.+.++++++.++....
T Consensus 323 ~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 323 VFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777778889999999999999999999999999988889999988776 999999999988887777666
Q ss_pred ccCC
Q 008137 207 LPES 210 (576)
Q Consensus 207 l~es 210 (576)
++++
T Consensus 402 ~~~~ 405 (491)
T PRK11010 402 CRQT 405 (491)
T ss_pred HHhc
Confidence 5543
No 167
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.16 E-value=2.1e-10 Score=124.95 Aligned_cols=177 Identities=17% Similarity=0.108 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Q 008137 281 GVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVAL 360 (576)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~ 360 (576)
.+....+.............|.+.++.+. +..+.+.......++.+++.++.|+++||+|||+.+..+.++..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 84 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGS-SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLC 84 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 33444444555556677778888888776 66677888888899999999999999999999999998888877776655
Q ss_pred HHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccccc
Q 008137 361 AVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEH 440 (576)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (576)
.....
T Consensus 85 ~~~~~--------------------------------------------------------------------------- 89 (485)
T TIGR00711 85 GVAPN--------------------------------------------------------------------------- 89 (485)
T ss_pred hCcCC---------------------------------------------------------------------------
Confidence 43311
Q ss_pred ccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008137 441 RTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSA 520 (576)
Q Consensus 441 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~ 520 (576)
.+..++..++.+.+.+ ...+....+..|.+|++.|+.+.++......+|..++|.+.+.+.+..||+
T Consensus 90 ------------~~~l~~~~~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~ 156 (485)
T TIGR00711 90 ------------LELMIIFRVIQGFGGG-PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWR 156 (485)
T ss_pred ------------HHHHHHHHHHHHhhhh-hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCce
Confidence 1222333333333322 334566678899999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCC
Q 008137 521 GTFLLFAGFSLLGLVAIYLLVPETKG 546 (576)
Q Consensus 521 ~~~~~~~~~~~i~~~~~~~~~~~~~~ 546 (576)
..|++.+.+.++..++.+++.|+.++
T Consensus 157 ~~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 157 WIFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred ehhhhhhHHHHHHHHHHHHHcCCccc
Confidence 99999888887777776666776543
No 168
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.15 E-value=2.1e-09 Score=116.34 Aligned_cols=166 Identities=19% Similarity=0.095 Sum_probs=113.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CchHHH-HHHHHHHHHHH
Q 008137 36 IGGLLFGYDTGVISGALLYIKED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF--GRKISL-LGADVLFFIGA 111 (576)
Q Consensus 36 l~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~--Grr~~~-~~~~~~~~i~~ 111 (576)
+..++...........+|.+.++ +|.+..+. +++.+.+.++..++.++.|+++||+ |||... .....+..++.
T Consensus 260 l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~---~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~ 336 (452)
T PRK11273 260 IANVFVYLLRYGILDWSPTYLKEVKHFALDKS---SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 336 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 33333333334455667776654 67777776 8888899999999999999999999 555432 22223333333
Q ss_pred HHHHh--cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHH-HHHHHHHHhcCCCchhHH
Q 008137 112 IIMAI--APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQF-LAYLINLAFTKAPGTWRW 188 (576)
Q Consensus 112 ~~~~~--~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~-l~~~l~~~l~~~~~~Wr~ 188 (576)
++..+ ..+.+...+..++.|.+..........+..|.+|+++||+++|+.+....+|.. ++|.+.+.+.+..+ |+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~ 415 (452)
T PRK11273 337 IVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDG 415 (452)
T ss_pred HHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chH
Confidence 32222 334555555566666544333334445678999999999999999988888765 47999999988877 999
Q ss_pred HHHHhHHHHHHHHHHHh
Q 008137 189 MLGVAGLPAVVQFGLMM 205 (576)
Q Consensus 189 ~f~v~~~~~~~~~~~~~ 205 (576)
.|++.++.+++.++...
T Consensus 416 ~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 416 GFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99988887777666543
No 169
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.14 E-value=2e-09 Score=114.36 Aligned_cols=134 Identities=13% Similarity=0.073 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhc
Q 008137 69 QELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEA 148 (576)
Q Consensus 69 ~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~ 148 (576)
.|.+.++..+...++.++.|++.||+|||+.+.++.++.+++..+.+++++.+.+++.+++.|++.+........+..+.
T Consensus 256 ~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 335 (396)
T TIGR00882 256 FGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQ 335 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38889999999999999999999999999999999999999888888889999999999999999887777777788888
Q ss_pred cCcchhhHHHHH-HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHH
Q 008137 149 SPAKIRGALVSA-NGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGL 203 (576)
Q Consensus 149 ~~~~~R~~~~~~-~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~ 203 (576)
.+++.|+...+. ++....+|.+++++++|++.+..| |+..|.+.+++.++..+.
T Consensus 336 ~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 336 FDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHHH
Confidence 888888776665 678899999999999999999776 999999988877665444
No 170
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.14 E-value=1e-09 Score=116.07 Aligned_cols=164 Identities=15% Similarity=0.030 Sum_probs=123.9
Q ss_pred hHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008137 293 INTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAP 372 (576)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (576)
........|.+.++.+. +..+.+.......++.+++.++.|++.||+|||+++..+.++.+++.++......
T Consensus 19 ~~~~~~~l~~~~~~~g~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~------- 90 (382)
T PRK10091 19 EFGIMGVLTELAHDVGI-SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSS------- 90 (382)
T ss_pred HHHHHhChHHHHHHcCC-CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCc-------
Confidence 34555567777777766 6667788888889999999999999999999999999988888887776654421
Q ss_pred CccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcc
Q 008137 373 TVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSF 452 (576)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 452 (576)
T Consensus 91 -------------------------------------------------------------------------------- 90 (382)
T PRK10091 91 -------------------------------------------------------------------------------- 90 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH
Q 008137 453 GWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLL 532 (576)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i 532 (576)
.+..++...+.+.+.+. ..+.......|.+|++.|+.++++......++..+++.+.+.+.+..||+..|.+.+++.++
T Consensus 91 ~~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~ 169 (382)
T PRK10091 91 YLMLAIGRLVSGFPHGA-FFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIA 169 (382)
T ss_pred HHHHHHHHHHHHhhhHH-HHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHH
Confidence 13333333333332221 22344456788899999999999999999999999999999999989999999998888777
Q ss_pred HHHHHHhhccCCC
Q 008137 533 GLVAIYLLVPETK 545 (576)
Q Consensus 533 ~~~~~~~~~~~~~ 545 (576)
..+..++..||.+
T Consensus 170 ~~~~~~~~lp~~~ 182 (382)
T PRK10091 170 VLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHhCCCCC
Confidence 7666666677754
No 171
>PRK10504 putative transporter; Provisional
Probab=99.14 E-value=1.1e-09 Score=119.10 Aligned_cols=175 Identities=14% Similarity=-0.015 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Q 008137 281 GVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVAL 360 (576)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~ 360 (576)
.+....+........+..+.|.+.++.+. +..+.+.......++..++.++.|+++||+|||+++..+.++..++.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 92 (471)
T PRK10504 14 IVAFGFFMQSLDTTIVNTALPSMAQSLGE-SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFC 92 (471)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 34444455555566777789999988777 66667777777788888999999999999999999988877777666554
Q ss_pred HHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccccc
Q 008137 361 AVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEH 440 (576)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (576)
.....
T Consensus 93 ~~~~~--------------------------------------------------------------------------- 97 (471)
T PRK10504 93 ALSGT--------------------------------------------------------------------------- 97 (471)
T ss_pred HHhCC---------------------------------------------------------------------------
Confidence 33210
Q ss_pred ccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008137 441 RTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSA 520 (576)
Q Consensus 441 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~ 520 (576)
.+..++..++.+.+.+ ...+....+..|.+|++.|+++.|+.+....+|..++|.+.+.+.+..||+
T Consensus 98 ------------~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~ 164 (471)
T PRK10504 98 ------------LNELLLARVLQGVGGA-MMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWH 164 (471)
T ss_pred ------------HHHHHHHHHHHHhhhH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHH
Confidence 1222333333333332 234455677789999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCC
Q 008137 521 GTFLLFAGFSLLGLVAIYLLVPET 544 (576)
Q Consensus 521 ~~~~~~~~~~~i~~~~~~~~~~~~ 544 (576)
..|.+...+.++..+......|+.
T Consensus 165 ~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 165 WIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999988887777777666666654
No 172
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.13 E-value=4.8e-09 Score=112.34 Aligned_cols=138 Identities=14% Similarity=0.010 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc--hHHHHHH
Q 008137 48 ISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP--QPWVIIL 125 (576)
Q Consensus 48 ~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~ 125 (576)
+...+|.+.++.+.+.... +.+.+...++..++.++.|++.||+|||+.+..+.++..++.+.....+ +...+.+
T Consensus 250 ~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (426)
T PRK12307 250 IFGLLPTYLAGEGFDTGVV---SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGA 326 (426)
T ss_pred HHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 4456677777777766666 8888999999999999999999999999999888877766655444333 2222222
Q ss_pred HHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Q 008137 126 GRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWM 189 (576)
Q Consensus 126 ~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~ 189 (576)
..+..+.+..+..+....++.|.+|+++|++++|+......+|..++|.+.+++.+..+ +...
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~~ 389 (426)
T PRK12307 327 CLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGAA 389 (426)
T ss_pred HHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHHH
Confidence 22222223333345566788999999999999999999999999999999999988766 5543
No 173
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.12 E-value=3.2e-09 Score=114.87 Aligned_cols=165 Identities=15% Similarity=0.064 Sum_probs=119.9
Q ss_pred HHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhccc-CChHHHHHHHHHHHHHHHHHHHHHH
Q 008137 287 AQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKY-GRRRLMIVSMFGLSSCLVALAVVFF 365 (576)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~-grr~~~~~~~~~~~~~~~~~~~~~~ 365 (576)
......++.+..+.|.|+++..+.+..+++...........++.+++|+++||+ |||+.+..+.++..++.+++.....
T Consensus 19 ~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~ 98 (493)
T PRK15462 19 IWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI 98 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334445667778889998776555777888888888888899999999999999 9999999998888888765542210
Q ss_pred HhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccc
Q 008137 366 QAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFI 445 (576)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (576)
.
T Consensus 99 ~------------------------------------------------------------------------------- 99 (493)
T PRK15462 99 H------------------------------------------------------------------------------- 99 (493)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccccc--ccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Q 008137 446 SGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLR--YRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTF 523 (576)
Q Consensus 446 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~ 523 (576)
.....+.+.+...+.+ ...+...++.+|.+|++ .|.++.++.....++|+.++|.+.+++.+..||+..|
T Consensus 100 -------~~~~~l~l~li~iG~G-~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F 171 (493)
T PRK15462 100 -------PSFLYLSLAIIVCGYG-LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGF 171 (493)
T ss_pred -------hhHHHHHHHHHHHhcc-cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHH
Confidence 0111222222222222 22344557889999975 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 008137 524 LLFAGFSLLGLVAIY 538 (576)
Q Consensus 524 ~~~~~~~~i~~~~~~ 538 (576)
.+.++..+++.+..+
T Consensus 172 ~iaaigm~l~li~~~ 186 (493)
T PRK15462 172 GLAAVGMIAGLVIFL 186 (493)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887665555555443
No 174
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.11 E-value=8.6e-10 Score=118.88 Aligned_cols=181 Identities=13% Similarity=0.024 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHH
Q 008137 279 YAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLV 358 (576)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~ 358 (576)
+....+.....+.....+....|.+.+ .+ .+..+.+.......++..++.++.|+++||+|||+.+..+.++.+++.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~ 106 (438)
T TIGR00712 29 FLGIFFGYAAYYLVRKNFALAMPYLVE-QG-FSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVML 106 (438)
T ss_pred HHHHHHHHHHHHHHhccHHhhhHHHHH-cC-CCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHH
Confidence 333433333333333334555666554 44 4778888888899999999999999999999999998888777777766
Q ss_pred HHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccc
Q 008137 359 ALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSD 438 (576)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (576)
++......
T Consensus 107 ~~~~~~~~------------------------------------------------------------------------ 114 (438)
T TIGR00712 107 LMGFVPWA------------------------------------------------------------------------ 114 (438)
T ss_pred HHhccccc------------------------------------------------------------------------
Confidence 54432100
Q ss_pred ccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH-hh
Q 008137 439 EHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE-AL 517 (576)
Q Consensus 439 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~-~~ 517 (576)
....+...+...+.+.+.+.. .+.......|.+|++.||+++|+.+....+++.+++.+.+...+ ..
T Consensus 115 -----------~~~~~~l~~~~~l~g~~~g~~-~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 182 (438)
T TIGR00712 115 -----------TSSIAIMFVLLFLNGWFQGMG-WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN 182 (438)
T ss_pred -----------cchHHHHHHHHHHHHHHhhcc-hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence 000112222233333333322 23344667799999999999999999999999998888776554 46
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhccCCC
Q 008137 518 GSAGTFLLFAGFSLLGLVAIYLLVPETK 545 (576)
Q Consensus 518 g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 545 (576)
||+..|++.++++++..+..+++.||++
T Consensus 183 ~w~~~f~~~~~~~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 183 DWHAALYFPAICAIIVALFAFAMMRDTP 210 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 8999999988888887766667777653
No 175
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.11 E-value=3.2e-09 Score=111.01 Aligned_cols=174 Identities=17% Similarity=0.066 Sum_probs=120.4
Q ss_pred HHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHH
Q 008137 282 VTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALA 361 (576)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~ 361 (576)
.....+..+..+.....+.|.++++..+.+..+.+++.....++.+++.++.|+++||+|||+.+..+.++..++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~ 85 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAG 85 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 34444455566677777888645444444778888888899999999999999999999999999999988888877766
Q ss_pred HHH-HHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccccc
Q 008137 362 VVF-FQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEH 440 (576)
Q Consensus 362 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (576)
+.. .
T Consensus 86 ~~~~~--------------------------------------------------------------------------- 90 (366)
T TIGR00886 86 LAVQS--------------------------------------------------------------------------- 90 (366)
T ss_pred HHhhh---------------------------------------------------------------------------
Confidence 543 1
Q ss_pred ccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHh----
Q 008137 441 RTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEA---- 516 (576)
Q Consensus 441 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~---- 516 (576)
.+..++...+.+.+ . +..+....+.+|.+|++.|+.+.++......+|..+++.+.+.+.+.
T Consensus 91 ------------~~~~~~~~~~~g~~-~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~ 156 (366)
T TIGR00886 91 ------------YSVLLLLRLFIGIA-G-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFG 156 (366)
T ss_pred ------------HHHHHHHHHHHHHh-c-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 12223333333333 2 22334456788999999999999999988888888888877776653
Q ss_pred ------hccchhh-HHHHHHHHHHHHHHHhhccCC
Q 008137 517 ------LGSAGTF-LLFAGFSLLGLVAIYLLVPET 544 (576)
Q Consensus 517 ------~g~~~~~-~~~~~~~~i~~~~~~~~~~~~ 544 (576)
.+|+..| +..+++..+..++.+.+.+|+
T Consensus 157 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 157 AGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 3677777 444555555444444555543
No 176
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.11 E-value=1.3e-09 Score=114.76 Aligned_cols=165 Identities=11% Similarity=-0.028 Sum_probs=119.2
Q ss_pred hhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008137 292 GINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHA 371 (576)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (576)
.+..+....|.+.++.+. +..+.+.+.....++..++.+..|+++||+|||+++.........+.........
T Consensus 6 ~~~~~~~~lp~i~~~~~~-s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~------ 78 (368)
T TIGR00903 6 IWVTFSPVLSLVAEDIDV-SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFN------ 78 (368)
T ss_pred HHHHHHhhHHHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhcc------
Confidence 355666677888888777 6778888888889999999999999999999998765544333332211111000
Q ss_pred CCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCc
Q 008137 372 PTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSS 451 (576)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 451 (576)
T Consensus 79 -------------------------------------------------------------------------------- 78 (368)
T TIGR00903 79 -------------------------------------------------------------------------------- 78 (368)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHH
Q 008137 452 FGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSL 531 (576)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 531 (576)
.+..++.-.+.+.+.+ .........+|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..|++.+++++
T Consensus 79 -~~~l~~~R~l~G~g~~--~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~ 155 (368)
T TIGR00903 79 -YEWLLACQLLAALGQP--FLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAA 155 (368)
T ss_pred -HHHHHHHHHHHHhHhH--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 0222333333333322 2223334558889999999999999999999999999999999999999999999899888
Q ss_pred HHHHHHHhhccCCCC
Q 008137 532 LGLVAIYLLVPETKG 546 (576)
Q Consensus 532 i~~~~~~~~~~~~~~ 546 (576)
+..++.++++||.++
T Consensus 156 ~~~~~~~~~lp~~p~ 170 (368)
T TIGR00903 156 AGIILVLAALPALPF 170 (368)
T ss_pred HHHHHHHHHcCCCCC
Confidence 888777788887643
No 177
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.10 E-value=3.9e-09 Score=115.00 Aligned_cols=168 Identities=18% Similarity=0.072 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhhHHHHhhhHHHHHhh--cCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc-cCChHHHHHHHHHHHHHHH
Q 008137 282 VTVQVAQQFVGINTVMYYSPTIVQFA--GFASKSTALALSLVTSGLNALGSIVSMAFVDK-YGRRRLMIVSMFGLSSCLV 358 (576)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk-~grr~~~~~~~~~~~~~~~ 358 (576)
+....+..-.+++....++|.|+++. .+.+..+++.+.....++..++.+++|+++|| +|||+++..+.++..++.+
T Consensus 15 l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~ 94 (475)
T TIGR00924 15 LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHF 94 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 33344444555677777888888764 34477888888899899999999999999999 8999999999998888877
Q ss_pred HHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccc
Q 008137 359 ALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSD 438 (576)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (576)
++.....
T Consensus 95 ~~~~~~~------------------------------------------------------------------------- 101 (475)
T TIGR00924 95 MLAMSIY------------------------------------------------------------------------- 101 (475)
T ss_pred HHHhccc-------------------------------------------------------------------------
Confidence 6664311
Q ss_pred ccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccc---cccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008137 439 EHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRY---RGVGGGIAAVSNWTSNLIVSLTFLTLTE 515 (576)
Q Consensus 439 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---rg~~~g~~~~~~~~g~~~~~~~~~~l~~ 515 (576)
.+...+...+.+.+.+ ...+....+.+|.+|++. |+.+.++.+...++|.+++|.+.+.+.+
T Consensus 102 --------------~~~~~~~~~l~g~g~g-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~ 166 (475)
T TIGR00924 102 --------------PDLIFYGLGTIAVGSG-LFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE 166 (475)
T ss_pred --------------HhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 0222223333322222 234555677788888654 8889999999999999999999999999
Q ss_pred hhccchhhHHHHHHHHHHHHHH
Q 008137 516 ALGSAGTFLLFAGFSLLGLVAI 537 (576)
Q Consensus 516 ~~g~~~~~~~~~~~~~i~~~~~ 537 (576)
..||+..|.+.++..+++.+..
T Consensus 167 ~~g~~~~f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 167 NYGYHVGFNLAAVGMVIGLLTF 188 (475)
T ss_pred hcChHHHHHHHHHHHHHHHHHH
Confidence 9999999988776665554443
No 178
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.10 E-value=2.5e-09 Score=113.85 Aligned_cols=168 Identities=11% Similarity=-0.041 Sum_probs=123.0
Q ss_pred HHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137 288 QQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQA 367 (576)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~ 367 (576)
....+.+....+.+.++++..+.+....++......+...+..++.|+++||+|||+++..+..+..++.+++.....
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~-- 98 (400)
T PRK11646 21 LVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHE-- 98 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhcc--
Confidence 334445555666676665544447888888888888888888999999999999999999988888888776654311
Q ss_pred hhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccC
Q 008137 368 AIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISG 447 (576)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (576)
T Consensus 99 -------------------------------------------------------------------------------- 98 (400)
T PRK11646 99 -------------------------------------------------------------------------------- 98 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHH
Q 008137 448 CPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFA 527 (576)
Q Consensus 448 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~ 527 (576)
.|...+...+.+.+.+ ...+...++..|.+|++.|+++.|+.+....+|..++|.+.+.+. ..|++..|++.+
T Consensus 99 -----~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~ 171 (400)
T PRK11646 99 -----PWLLWLSCILSGLGGT-LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGA 171 (400)
T ss_pred -----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 1333333333333322 233445567789999999999999999999999999999999988 678988888888
Q ss_pred HHHHHHHHHHHhhccCC
Q 008137 528 GFSLLGLVAIYLLVPET 544 (576)
Q Consensus 528 ~~~~i~~~~~~~~~~~~ 544 (576)
.+.++..++..++.||.
T Consensus 172 ~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 172 VLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 77776665555556653
No 179
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.10 E-value=4.3e-09 Score=114.76 Aligned_cols=168 Identities=12% Similarity=0.016 Sum_probs=114.3
Q ss_pred HHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Q 008137 286 VAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFF 365 (576)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~ 365 (576)
++..+........+.|.+.++.+. +..+.+.......++..++.++.|+++||+|||+++..+.++..++.++..+...
T Consensus 45 ~~~~~~~~~~~~~~~~~l~~~~gl-s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s 123 (476)
T PLN00028 45 FFTCFVSTFAAAPLLPIIRDNLNL-TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSS 123 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444444555566777777777 6667777777788888899999999999999999988877777766655544311
Q ss_pred HhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccc
Q 008137 366 QAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFI 445 (576)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (576)
T Consensus 124 -------------------------------------------------------------------------------- 123 (476)
T PLN00028 124 -------------------------------------------------------------------------------- 123 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH---------h
Q 008137 446 SGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE---------A 516 (576)
Q Consensus 446 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~---------~ 516 (576)
.+..++..++.+++.+ ...+ ...+.+|.+|++.||.++|+.+....+|..+++.+.+.+.. .
T Consensus 124 -------~~~l~~~r~l~G~~~~-~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 194 (476)
T PLN00028 124 -------ATGFIAVRFFIGFSLA-TFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSF 194 (476)
T ss_pred -------HHHHHHHHHHHHHHHH-hhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 0222222233333222 2222 33467899999999999999988888888877766655432 1
Q ss_pred hccchhhHHHHHHHHHHHHHHHhhccC
Q 008137 517 LGSAGTFLLFAGFSLLGLVAIYLLVPE 543 (576)
Q Consensus 517 ~g~~~~~~~~~~~~~i~~~~~~~~~~~ 543 (576)
.||+.+|++.+++.++..++.+++.++
T Consensus 195 ~gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 195 TAWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 479999999998888776666555443
No 180
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.10 E-value=3.3e-09 Score=110.18 Aligned_cols=168 Identities=17% Similarity=0.064 Sum_probs=136.2
Q ss_pred HHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Q 008137 286 VAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFF 365 (576)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~ 365 (576)
.+...+......-.+|.+-++.+. +...++.+...+..+..+++++...+.||+.||++++..+.+..++.++..+...
T Consensus 22 ~F~igttEfv~~gLLp~iA~dl~v-s~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~ 100 (394)
T COG2814 22 AFAIGTTEFVPVGLLPPIAADLGV-SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPS 100 (394)
T ss_pred HHHHHhHHHHHHhchHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333334445666677888888887 7788899999999999999999999999999999999999999999888777643
Q ss_pred HhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccc
Q 008137 366 QAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFI 445 (576)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (576)
.
T Consensus 101 f------------------------------------------------------------------------------- 101 (394)
T COG2814 101 F------------------------------------------------------------------------------- 101 (394)
T ss_pred H-------------------------------------------------------------------------------
Confidence 2
Q ss_pred cCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHH
Q 008137 446 SGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLL 525 (576)
Q Consensus 446 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~ 525 (576)
+..++.=.+....-+ .+.++...+..++.|+++|+++.++..+...++..++.++..++-|.+||+.+|+.
T Consensus 102 --------~~Ll~aR~~~g~a~G-~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ 172 (394)
T COG2814 102 --------AVLLLARALAGLAHG-VFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLA 172 (394)
T ss_pred --------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHH
Confidence 222222222222221 22345667889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 008137 526 FAGFSLLGLVAIYLLVP 542 (576)
Q Consensus 526 ~~~~~~i~~~~~~~~~~ 542 (576)
.+.++++.++..+..+|
T Consensus 173 ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 173 IAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 99999999999999999
No 181
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.10 E-value=2.1e-09 Score=115.52 Aligned_cols=114 Identities=21% Similarity=0.280 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhhhhhhhhhHHHHHHhc
Q 008137 70 ELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIA-PQPWVIILGRIFVGLGVGMASMTAPLYISEA 148 (576)
Q Consensus 70 g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~ 148 (576)
+++.++..++..++.+++++++||+|+|+.+.++.++..++.++..+. ++.+.+++..++.|++.+...+...++++|.
T Consensus 260 ~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (437)
T TIGR00792 260 SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADT 339 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777888899999999999999999999999999998888888777765 3567778888999999999999999999988
Q ss_pred cC-------cchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008137 149 SP-------AKIRGALVSANGFLITGGQFLAYLINLAFTKAP 183 (576)
Q Consensus 149 ~~-------~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~ 183 (576)
.+ ++.+|.+.++++....+|..+++.+.+.+.+..
T Consensus 340 ~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 340 VDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred hhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 65 455799999999999999999999999887543
No 182
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.09 E-value=5.6e-09 Score=110.63 Aligned_cols=151 Identities=19% Similarity=0.035 Sum_probs=116.4
Q ss_pred HHHHHHHHHhhccchhhhHHHHHHHHHHH-HHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh------cchHH
Q 008137 49 SGALLYIKEDFRDVEKKTWLQELIVSMAV-AGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAI------APQPW 121 (576)
Q Consensus 49 ~~~~~~i~~~~~~~~~~~~~~g~i~s~~~-~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~------~~~~~ 121 (576)
....+.+.+|.|.+.++. |++..... ....++.++.|++.||+|+|+.+..+.++.++..+.... .++..
T Consensus 228 ~~~~~~~l~~~G~s~~~i---g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (390)
T TIGR02718 228 FGLSKLYLVDAGWPLEWI---GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIA 304 (390)
T ss_pred HHHhhHHHHhcCCCHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHH
Confidence 334566667788888887 88888775 466778899999999999999988877665333332221 23444
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHhccCc-chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHH
Q 008137 122 VIILGRIFVGLGVGMASMTAPLYISEASPA-KIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQ 200 (576)
Q Consensus 122 ~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~-~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~ 200 (576)
.+.....+.+++.|...+...+.+.+..++ ++|++.+++.+...++|..+++.++|.+.+..+ |+..|++.+++.++.
T Consensus 305 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 305 VAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHH
Confidence 455566677777888888888888888776 789999999999999999999999999998776 999999888777665
Q ss_pred HHH
Q 008137 201 FGL 203 (576)
Q Consensus 201 ~~~ 203 (576)
.+.
T Consensus 384 ~~~ 386 (390)
T TIGR02718 384 ILL 386 (390)
T ss_pred HHH
Confidence 544
No 183
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.09 E-value=3.1e-09 Score=112.72 Aligned_cols=164 Identities=12% Similarity=0.042 Sum_probs=118.3
Q ss_pred HHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 008137 294 NTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPT 373 (576)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (576)
.......|.+.++.+. +..+.+.......++..++.++.|+++||+|||+.+..+.++..++.++......
T Consensus 25 ~~~~p~~~~i~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-------- 95 (394)
T PRK11652 25 TIYVPAIADMARDLNV-REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS-------- 95 (394)
T ss_pred HHHhccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc--------
Confidence 3344446777777776 6677788888888999999999999999999999998888777777665443211
Q ss_pred ccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcch
Q 008137 374 VSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFG 453 (576)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 453 (576)
.
T Consensus 96 -------------------------------------------------------------------------------~ 96 (394)
T PRK11652 96 -------------------------------------------------------------------------------L 96 (394)
T ss_pred -------------------------------------------------------------------------------H
Confidence 0
Q ss_pred hHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Q 008137 454 WLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLG 533 (576)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~ 533 (576)
+..++...+.+.+.+ ...+....+..|.++++.++...++.+....++..++|.+.+.+.+..||+..|++.+++.++.
T Consensus 97 ~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~ 175 (394)
T PRK11652 97 TVLIAASAIQGLGTG-VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGV 175 (394)
T ss_pred HHHHHHHHHHHhhhh-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 222222222222222 1223344566788888889999999999999999999999999998889999999888777766
Q ss_pred HHHHHhhccCCCC
Q 008137 534 LVAIYLLVPETKG 546 (576)
Q Consensus 534 ~~~~~~~~~~~~~ 546 (576)
.++..++.||++.
T Consensus 176 ~~~~~~~~~~~~~ 188 (394)
T PRK11652 176 TFSMARWMPETRP 188 (394)
T ss_pred HHHHHHhCCccCc
Confidence 6655566777543
No 184
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.08 E-value=1.3e-09 Score=114.46 Aligned_cols=163 Identities=13% Similarity=0.061 Sum_probs=124.4
Q ss_pred HHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 008137 294 NTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPT 373 (576)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (576)
.......|.+.++.+. +..+.+.......++..++.++.|+++||+|||+.+..+.++..++.+++.....
T Consensus 8 ~~~~p~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~-------- 78 (377)
T PRK11102 8 DMYLPALPVIAADFGV-SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT-------- 78 (377)
T ss_pred HHHhccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc--------
Confidence 3344556777777766 6778888888888999999999999999999999999988888888776654421
Q ss_pred ccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcch
Q 008137 374 VSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFG 453 (576)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 453 (576)
.
T Consensus 79 -------------------------------------------------------------------------------~ 79 (377)
T PRK11102 79 -------------------------------------------------------------------------------I 79 (377)
T ss_pred -------------------------------------------------------------------------------H
Confidence 1
Q ss_pred hHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Q 008137 454 WLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLG 533 (576)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~ 533 (576)
+...+...+.+.+.+ ...+....+..|.+|++.|++..++.+....+|..++|.+.+.+.+..||+..|++.+++.++.
T Consensus 80 ~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 158 (377)
T PRK11102 80 DQLIYMRFLHGLAAA-AASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILA 158 (377)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 222333333333322 2234455778899999999999999999999999999999999999899999999888888887
Q ss_pred HHHHHhhccCCC
Q 008137 534 LVAIYLLVPETK 545 (576)
Q Consensus 534 ~~~~~~~~~~~~ 545 (576)
.+...+..||++
T Consensus 159 ~~~~~~~~~~~~ 170 (377)
T PRK11102 159 AALVFFFIPETL 170 (377)
T ss_pred HHHHHHhCCccC
Confidence 776666677654
No 185
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.08 E-value=1.4e-09 Score=119.07 Aligned_cols=178 Identities=15% Similarity=0.010 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHH
Q 008137 279 YAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLV 358 (576)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~ 358 (576)
+..+.+..+....-......-.|.+.++.+. +..+.+.....+.++...+.+..|+++||+|||+++..+.++..++.+
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~-s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGA-SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4444444555555556677778888887766 566667777777888888899999999999999999999888888877
Q ss_pred HHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccc
Q 008137 359 ALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSD 438 (576)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (576)
+......
T Consensus 87 ~~~~a~~------------------------------------------------------------------------- 93 (495)
T PRK14995 87 AAAFSPT------------------------------------------------------------------------- 93 (495)
T ss_pred HHHHcCC-------------------------------------------------------------------------
Confidence 6664411
Q ss_pred ccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccc-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008137 439 EHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEI-YPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEAL 517 (576)
Q Consensus 439 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~ 517 (576)
.+..++.-.+.+.+.+ +..+.......+. .|++.|+++.|+......+|..++|.+.+.+.+..
T Consensus 94 --------------~~~li~~r~l~G~g~~-~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~ 158 (495)
T PRK14995 94 --------------ASWLIATRALLAIGAA-MIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF 158 (495)
T ss_pred --------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 1333333333443333 2233333444444 47789999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhccCCC
Q 008137 518 GSAGTFLLFAGFSLLGLVAIYLLVPETK 545 (576)
Q Consensus 518 g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 545 (576)
||++.|++...+.++..++.++++|+.+
T Consensus 159 gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 159 YWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999988888887777777777653
No 186
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.07 E-value=8e-10 Score=114.37 Aligned_cols=165 Identities=22% Similarity=0.190 Sum_probs=121.1
Q ss_pred hhHHHHhhhH-HHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008137 292 GINTVMYYSP-TIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIH 370 (576)
Q Consensus 292 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (576)
.........| .+.++.+. +..+.+.+.....++..++.++.|+++||+|||+++..+.++.+++.++..+. .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~----- 83 (352)
T PF07690_consen 11 GFSIISPALPLYLAEELGL-SPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-S----- 83 (352)
T ss_dssp HHHHHHHHHH-HHHCCSTT-TSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-C-----
T ss_pred HHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-h-----
Confidence 3444555566 44444454 67778888888899999999999999999999999999988888884444422 0
Q ss_pred CCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCC
Q 008137 371 APTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPS 450 (576)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 450 (576)
T Consensus 84 -------------------------------------------------------------------------------- 83 (352)
T PF07690_consen 84 -------------------------------------------------------------------------------- 83 (352)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHH
Q 008137 451 SFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFS 530 (576)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 530 (576)
..+..++..++.+.+.+ ...+....+..|.+|+++|+..+|+.+....+|..++|.+.+.+.+..||+..|++.+++.
T Consensus 84 -~~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~ 161 (352)
T PF07690_consen 84 -NFWLLLIARFLLGIGSG-FFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILS 161 (352)
T ss_dssp -CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHH
T ss_pred -hHHHHhhhccccccccc-cccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchh
Confidence 01333333333333332 3445666788999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHhhccCCC
Q 008137 531 LLGLVAIYLLVPETK 545 (576)
Q Consensus 531 ~i~~~~~~~~~~~~~ 545 (576)
++..++...+.++++
T Consensus 162 ~~~~il~~~~~~~~~ 176 (352)
T PF07690_consen 162 LIAAILFILFLPEPP 176 (352)
T ss_dssp HHHHHHHHCCC---S
T ss_pred hhhhhhHhhhhhhcc
Confidence 988775445554433
No 187
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.07 E-value=3e-09 Score=113.80 Aligned_cols=159 Identities=15% Similarity=0.007 Sum_probs=117.7
Q ss_pred hhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccc
Q 008137 299 YSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIE 378 (576)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (576)
-.|.+.++.+. +..........+.++..++.++.|+++||+|||+++..+..+..++.++......
T Consensus 38 ~l~~i~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~------------- 103 (413)
T PRK15403 38 GIINVVRDFNA-DVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTS------------- 103 (413)
T ss_pred CHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCC-------------
Confidence 34444555555 6666777777888888999999999999999999999888877777665554311
Q ss_pred cccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHH
Q 008137 379 SSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVV 458 (576)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 458 (576)
.+..++
T Consensus 104 --------------------------------------------------------------------------~~~l~~ 109 (413)
T PRK15403 104 --------------------------------------------------------------------------MTQFLI 109 (413)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 122233
Q ss_pred HHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Q 008137 459 FLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIY 538 (576)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~ 538 (576)
.-++.+.+.+ ...+....+..|.+|++.+++.+++.+....++..++|.+.+.+.+..||+..|++.+++.++..+..+
T Consensus 110 ~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 110 ARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLL 188 (413)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222 122344567789999999999999999999999999999999999888999999999988888777666
Q ss_pred hhccCCCC
Q 008137 539 LLVPETKG 546 (576)
Q Consensus 539 ~~~~~~~~ 546 (576)
+..||+++
T Consensus 189 ~~lp~~~~ 196 (413)
T PRK15403 189 LAMPETVK 196 (413)
T ss_pred HhCCCCcc
Confidence 66788653
No 188
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.07 E-value=2.7e-09 Score=117.20 Aligned_cols=164 Identities=13% Similarity=0.064 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhhccchhhh--------HHHHH-HHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc
Q 008137 48 ISGALLYIKEDFRDVEKKT--------WLQEL-IVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP 118 (576)
Q Consensus 48 ~~~~~~~i~~~~~~~~~~~--------~~~g~-i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~ 118 (576)
.....|.+.++.|.+..+. ..... ...+..++..++.++.+++.||+|||+.++++.++.+++.++.++..
T Consensus 307 ~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~ 386 (502)
T TIGR00887 307 VNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAY 386 (502)
T ss_pred cccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 3334677777777654321 00011 23345556677889999999999999999998888777776665432
Q ss_pred h----HHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------ch
Q 008137 119 Q----PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP---------GT 185 (576)
Q Consensus 119 ~----~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~---------~~ 185 (576)
+ ...+...-+...++..+..+....+.+|.+|.+.|++++++.+....+|.++++.+.+.+.+.. .+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 466 (502)
T TIGR00887 387 NHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW 466 (502)
T ss_pred HhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccccc
Confidence 1 1111111111122222234566777899999999999999999999999999999999887632 12
Q ss_pred hHHHHHHhHHHHHHHHHHHhhccCCh
Q 008137 186 WRWMLGVAGLPAVVQFGLMMMLPESP 211 (576)
Q Consensus 186 Wr~~f~v~~~~~~~~~~~~~~l~esp 211 (576)
+...|++.+++.++..+..+++||+.
T Consensus 467 ~~~~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 467 MGHVLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred chHHHHHHHHHHHHHHHHheEeccCC
Confidence 46677887777776666666778874
No 189
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.07 E-value=9.3e-09 Score=110.64 Aligned_cols=160 Identities=17% Similarity=0.089 Sum_probs=103.1
Q ss_pred hhHHHHHHHHH-HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH--h--cchH
Q 008137 46 GVISGALLYIK-EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMA--I--APQP 120 (576)
Q Consensus 46 ~~~~~~~~~i~-~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~--~--~~~~ 120 (576)
..+...+|.+. ++++.+..+. ++..++..++..+++++.|+++||+|||+.+.++.++.++..+... . .++.
T Consensus 260 ~~~~~~lp~~l~~~~g~s~~~~---~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (432)
T PRK10406 260 YTFTTYMQKYLVNTAGMHANVA---SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSP 336 (432)
T ss_pred HHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 33444566654 5678777666 8888888888889999999999999999988776655433332111 1 2233
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHH-HHHHHHHHHHHhcCCCchhHHHHHHhHHHHHH
Q 008137 121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITG-GQFLAYLINLAFTKAPGTWRWMLGVAGLPAVV 199 (576)
Q Consensus 121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~-G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~ 199 (576)
...+..-++.+.+.+...+....+++|++|++.|+.++|+.+....+ .....|.+.+.+.. .+.|...++..++..++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-~g~~~~~~~~~~~~~~i 415 (432)
T PRK10406 337 YAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS-IGMETAFFWYVTLMAVV 415 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH-hCCCcHHHHHHHHHHHH
Confidence 33222223333344444555678889999999999999998765443 23347777776543 34376677766666666
Q ss_pred HHHHHhhccC
Q 008137 200 QFGLMMMLPE 209 (576)
Q Consensus 200 ~~~~~~~l~e 209 (576)
.++..+++++
T Consensus 416 ~~~~~~~l~~ 425 (432)
T PRK10406 416 AFLVSLMLHR 425 (432)
T ss_pred HHHHHHHhhh
Confidence 6555555443
No 190
>PRK15075 citrate-proton symporter; Provisional
Probab=99.06 E-value=5.6e-09 Score=112.42 Aligned_cols=140 Identities=16% Similarity=0.116 Sum_probs=101.9
Q ss_pred hhhhhhHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH----HHh
Q 008137 42 GYDTGVISGALLYIKED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAII----MAI 116 (576)
Q Consensus 42 ~~~~~~~~~~~~~i~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~----~~~ 116 (576)
......+....|.+.++ +|.+..+. ++....+.++..++.+++|+++||+|||+.+..+.++..+..+. ...
T Consensus 251 ~~~~~~~~~~~p~~l~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 327 (434)
T PRK15075 251 TVSFYLITVYTPTFGKTVLHLSAADS---LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA 327 (434)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33344455567776655 78877776 88888889999999999999999999999888765544332221 112
Q ss_pred cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHhcCCCc
Q 008137 117 APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANG-FLITGGQFLAYLINLAFTKAPG 184 (576)
Q Consensus 117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~-~~~~~G~~l~~~l~~~l~~~~~ 184 (576)
.+++..+.+..++.|++.+...+....++.|.+|++.|+.++++.+ .+..++..++|.+.+.+.+..+
T Consensus 328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 328 APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 3445455555666777777777777788999999999999999854 4444557789999999888765
No 191
>TIGR00898 2A0119 cation transport protein.
Probab=99.05 E-value=5.1e-09 Score=114.88 Aligned_cols=137 Identities=16% Similarity=0.159 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHhhhhhhhhhHHHHHHhcc
Q 008137 72 IVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP--WVIILGRIFVGLGVGMASMTAPLYISEAS 149 (576)
Q Consensus 72 i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~R~l~G~~~g~~~~~~~~~i~e~~ 149 (576)
......+....+.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.++.++....+.+|.+
T Consensus 360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 439 (505)
T TIGR00898 360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY 439 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344566777888999999999999999999999999998888877654 55566667778888888889999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhhccCCh
Q 008137 150 PAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESP 211 (576)
Q Consensus 150 ~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp 211 (576)
|++.|+.++|+.+....+|.+++|.+.+ +.+. ++..++++.+...++..+..+++||+.
T Consensus 440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 440 PTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK--WLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred cHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH--HHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 9999999999999999999999999988 4332 367788888888888777777888864
No 192
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=2e-07 Score=98.96 Aligned_cols=107 Identities=12% Similarity=0.111 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcc
Q 008137 73 VSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAK 152 (576)
Q Consensus 73 ~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~ 152 (576)
.++-+..+.+++++.+.+.|+.|.|+.++++.....+-.+..-+ +|-+-+++.-.+.|+|.+..|..--.|++|+.+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77788888899999999999999999999999998877776655 56777889999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008137 153 IRGALVSANGFLITGGQFLAYLINLAFT 180 (576)
Q Consensus 153 ~R~~~~~~~~~~~~~G~~l~~~l~~~l~ 180 (576)
.+.+..++.......+.++|..+...+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~ 162 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYF 162 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeee
Confidence 9999999888888888888766655443
No 193
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.03 E-value=3e-08 Score=105.66 Aligned_cols=150 Identities=12% Similarity=-0.029 Sum_probs=115.5
Q ss_pred HHHHHHH-HHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhc-----chHHH
Q 008137 49 SGALLYI-KEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIA-----PQPWV 122 (576)
Q Consensus 49 ~~~~~~i-~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~ 122 (576)
....|.+ .++++.+..+. ++......++..++.++.|++.||+|+|+.+.++.++..++.++.++. ++++.
T Consensus 235 ~~~~p~~~~~~~g~~~~~~---g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 311 (406)
T PRK15402 235 IALSPVILISGEQLSSYEY---GLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLW 311 (406)
T ss_pred HHHhHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHH
Confidence 3344554 46678777666 777777888899999999999999999999999888887777766553 35677
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHH
Q 008137 123 IILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFG 202 (576)
Q Consensus 123 l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~ 202 (576)
+++.-++.|++.+...+......... ++++||++.+.++....+|..+|+.+.+.+.+..+ |....+..++.+++.+.
T Consensus 312 ~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~ 389 (406)
T PRK15402 312 LTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG-NGLFNLFNLANGLLWLL 389 (406)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc-hHHHHHHHHHHHHHHHH
Confidence 78889999999998777666655444 45889999999999999999999999999988776 55555555544444433
Q ss_pred H
Q 008137 203 L 203 (576)
Q Consensus 203 ~ 203 (576)
.
T Consensus 390 ~ 390 (406)
T PRK15402 390 L 390 (406)
T ss_pred H
Confidence 3
No 194
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.02 E-value=1.7e-08 Score=105.99 Aligned_cols=168 Identities=19% Similarity=0.196 Sum_probs=133.8
Q ss_pred HHHhhhhhhhhHHHHHHHHH-HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 008137 37 GGLLFGYDTGVISGALLYIK-EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMA 115 (576)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~ 115 (576)
..+-+.+|++ + +.+- .-|+..+......|.+.++..+.-++.-.+..++.+|+|.|+.++++.+++++=.++++
T Consensus 233 ~~~Y~vfdqq-f----~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~ 307 (412)
T PF01306_consen 233 AAIYDVFDQQ-F----PIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSG 307 (412)
T ss_dssp HHHHHHHHHH-H----HHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-H----HHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHh
Confidence 3444556655 2 3333 33333333334469999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHH-HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhH
Q 008137 116 IAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSA-NGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAG 194 (576)
Q Consensus 116 ~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~-~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~ 194 (576)
++++++.+.+.+.+.|+-.+........|+++.+|+|..+....+ .+...++|.++...++|.+.+..| .+..|++.+
T Consensus 308 ~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg 386 (412)
T PF01306_consen 308 FATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMG 386 (412)
T ss_dssp T--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHH
Confidence 999999999999999999999999999999999999888777776 578899999999999999999887 899999988
Q ss_pred HHHHHHHHH-HhhccCC
Q 008137 195 LPAVVQFGL-MMMLPES 210 (576)
Q Consensus 195 ~~~~~~~~~-~~~l~es 210 (576)
.+.++..+. .+.++++
T Consensus 387 ~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 387 LIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHHHHHHHHS--S
T ss_pred HHHHHHHHHheeeecCC
Confidence 877665555 5556544
No 195
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.01 E-value=3.5e-09 Score=115.32 Aligned_cols=177 Identities=15% Similarity=0.113 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccC--chHHHHHHHHH
Q 008137 29 KLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFG--RKISLLGADVL 106 (576)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~G--rr~~~~~~~~~ 106 (576)
+.....+++..+..+...+....+|.+.++.+.++.+. ..+.++..+...++.++.|+++|+.. ++.++.+++++
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~a---a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~ 374 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDA---AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLI 374 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhh---HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHH
Confidence 34556667777788888888889999999999998888 99999999999999999999999988 56788889999
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 008137 107 FFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTW 186 (576)
Q Consensus 107 ~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~W 186 (576)
.+++.+.+.++++++.++..-.+.|++.|.........+.|..+.++-..+.|+.....+++.++||++++.+.+..++|
T Consensus 375 ~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y 454 (509)
T KOG2504|consen 375 AGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNY 454 (509)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCe
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999988889
Q ss_pred HHHHHHhHHHHHHHHHHHhhcc
Q 008137 187 RWMLGVAGLPAVVQFGLMMMLP 208 (576)
Q Consensus 187 r~~f~v~~~~~~~~~~~~~~l~ 208 (576)
...|+..++..++...+++..+
T Consensus 455 ~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 455 DHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eeehhhcChHHHHHHHHHHHhH
Confidence 9999999999888887777666
No 196
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.00 E-value=3.7e-09 Score=114.78 Aligned_cols=149 Identities=13% Similarity=-0.071 Sum_probs=113.1
Q ss_pred CchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCC
Q 008137 310 ASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCP 389 (576)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (576)
.+....+.+.....++.+++.++.|+++||+|||+.+..+.++..++.++........
T Consensus 73 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---------------------- 130 (465)
T TIGR00894 73 WSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG---------------------- 130 (465)
T ss_pred CCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcC----------------------
Confidence 3667778888888999999999999999999999999888877776665544332100
Q ss_pred cccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcC
Q 008137 390 AYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSP 469 (576)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 469 (576)
.+..++.-++.+ ....
T Consensus 131 ---------------------------------------------------------------~~~l~~~r~~~G-~~~~ 146 (465)
T TIGR00894 131 ---------------------------------------------------------------IALVVFCRVIQG-LAQG 146 (465)
T ss_pred ---------------------------------------------------------------chHHHHHHHHHH-Hhcc
Confidence 022233333333 3333
Q ss_pred CcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHh-hccchhhHHHHHHHHHHHHHHHhhccCC
Q 008137 470 GMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEA-LGSAGTFLLFAGFSLLGLVAIYLLVPET 544 (576)
Q Consensus 470 ~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 544 (576)
...+....+.+|.+|++.|++++|+.+....+|.++++.+.+.+.+. .||+..|++.+++.++..++.+.+.++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 147 SVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred cchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence 44566667889999999999999999999999999999999999988 4999999999888877766666655543
No 197
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.00 E-value=3.2e-08 Score=105.33 Aligned_cols=148 Identities=17% Similarity=0.169 Sum_probs=107.7
Q ss_pred HHHHHhhccchhhhHHHHHHHHHH-HHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH---Hhc-chHHHHHHHH
Q 008137 53 LYIKEDFRDVEKKTWLQELIVSMA-VAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM---AIA-PQPWVIILGR 127 (576)
Q Consensus 53 ~~i~~~~~~~~~~~~~~g~i~s~~-~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~l~~~R 127 (576)
+.+.+++|.+..+. +++.+.. .++..++.+++|++.||+|+|+.+.++.++..+..+.. ++. ++.+.+++.-
T Consensus 234 ~~l~~~~G~~~~~~---g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 310 (402)
T PRK11902 234 TFLIRGAGFSAGEV---GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAI 310 (402)
T ss_pred HHHHHhcCCCHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 45667788887777 8887654 55789999999999999999998877777666554433 444 4556555554
Q ss_pred ----HHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHH
Q 008137 128 ----IFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGL 203 (576)
Q Consensus 128 ----~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~ 203 (576)
+..|++.+...+....++.+.+|.+++ +..+...++|.+++.+++|.+.+..| |+..|.+.++++++.++.
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~ 385 (402)
T PRK11902 311 GIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLAL 385 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHH
Confidence 455666666677777788888776654 44555556777766778999988887 999999999888887666
Q ss_pred Hhhcc
Q 008137 204 MMMLP 208 (576)
Q Consensus 204 ~~~l~ 208 (576)
.+..+
T Consensus 386 ~~~~~ 390 (402)
T PRK11902 386 LWLMR 390 (402)
T ss_pred HHHHh
Confidence 55444
No 198
>PRK11043 putative transporter; Provisional
Probab=99.00 E-value=1.1e-08 Score=108.79 Aligned_cols=154 Identities=16% Similarity=0.040 Sum_probs=111.0
Q ss_pred hHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccc
Q 008137 300 SPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIES 379 (576)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (576)
.|.+.++.+. +..+.+.......++..++.++.|+++||+|||+.+..+..+..++.++..+...
T Consensus 29 ~~~i~~~~~~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-------------- 93 (401)
T PRK11043 29 FKAIQADLQT-SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES-------------- 93 (401)
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC--------------
Confidence 3444555555 7778888888889999999999999999999999998888777766665544311
Q ss_pred ccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHH
Q 008137 380 SHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVF 459 (576)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 459 (576)
.+..++.
T Consensus 94 -------------------------------------------------------------------------~~~l~~~ 100 (401)
T PRK11043 94 -------------------------------------------------------------------------AAQLLVL 100 (401)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 0222222
Q ss_pred HHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHh
Q 008137 460 LGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYL 539 (576)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 539 (576)
..+.+.+.. ...+....+..|.+|++.++...+..+....++..++|.+.+.+.+..||+..|++.+++.++..+..++
T Consensus 101 ~~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 101 RFVQAVGVC-SAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHhhhH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 222222221 1122334567889999888888898888889999999999999999999999998888887776665544
Q ss_pred hcc
Q 008137 540 LVP 542 (576)
Q Consensus 540 ~~~ 542 (576)
+.+
T Consensus 180 ~~~ 182 (401)
T PRK11043 180 LKP 182 (401)
T ss_pred cCC
Confidence 433
No 199
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.99 E-value=1.4e-08 Score=122.46 Aligned_cols=148 Identities=15% Similarity=0.171 Sum_probs=123.6
Q ss_pred HHHHHH-HHHhhccchh-hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 008137 49 SGALLY-IKEDFRDVEK-KTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILG 126 (576)
Q Consensus 49 ~~~~~~-i~~~~~~~~~-~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 126 (576)
...+|. +.+.++.+.. .. +++.+...++..++++++|++.||+++|+.+.++.++.+++.++..+..+.+.++++
T Consensus 252 ~~~~~~~~~~~~g~s~~~~~---g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (1146)
T PRK08633 252 QANFPAYAKEVLGLDNTFQV---QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVL 328 (1146)
T ss_pred HHhhHHHHHHHhCCCcHHHH---HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444 4566787776 66 999999999999999999999999999999999999888888888888899999999
Q ss_pred HHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHH
Q 008137 127 RIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVV 199 (576)
Q Consensus 127 R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~ 199 (576)
.++.|++.++..+...+++.+..|++.||+++++.++...+|.++++.+++.+.....++...|++.+.+.++
T Consensus 329 ~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 329 FFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888888877654322366666665554433
No 200
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.99 E-value=6.2e-09 Score=108.73 Aligned_cols=139 Identities=18% Similarity=0.062 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchHHHHHHHHHHHHHHHHHHhcchHHHHH
Q 008137 46 GVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF-GRKISLLGADVLFFIGAIIMAIAPQPWVII 124 (576)
Q Consensus 46 ~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~ 124 (576)
......+|.+.++.+.+..+. +.+.+...++..+++++.|++.||+ +||+.+.++.++.+++.+...+.++.....
T Consensus 214 ~~~~~~lp~~~~~~g~~~~~~---g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (355)
T TIGR00896 214 YSLIGWLPAILISHGASAATA---GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA 290 (355)
T ss_pred HHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 344456777778888877776 9999999999999999999999999 567777788888888877777765433332
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 008137 125 LGRIFVGLGVGMASMTAPLYISEASP-AKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRW 188 (576)
Q Consensus 125 ~~R~l~G~~~g~~~~~~~~~i~e~~~-~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~ 188 (576)
.-++.|++.|...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+.+..++|.+
T Consensus 291 -~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~~ 354 (355)
T TIGR00896 291 -WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWLM 354 (355)
T ss_pred -HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4578899999999888787766554 56678889998888889999999999999887765654
No 201
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.97 E-value=4.6e-08 Score=103.81 Aligned_cols=172 Identities=20% Similarity=0.241 Sum_probs=135.2
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHhhc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008137 36 IGGLLFGYDTGVISGALLYIKEDFR-DVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM 114 (576)
Q Consensus 36 l~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~ 114 (576)
+..++.+.....+....+...++.+ .+.... +.+.++..++=...-.+.+++..|+|.|+++.++.+.+.+=..+.
T Consensus 214 l~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~---g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~ 290 (400)
T PF03825_consen 214 LAAFLIGISHAAYYTFFSIYLQELGGYSGSTI---GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLY 290 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhhHH---HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777787888888 455555 777788888888888999999999999999999999999988888
Q ss_pred Hhc-chHHHHHH----HHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHH-HHHHHHHHHHHHHHhcCCCc----
Q 008137 115 AIA-PQPWVIIL----GRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFL-ITGGQFLAYLINLAFTKAPG---- 184 (576)
Q Consensus 115 ~~~-~~~~~l~~----~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~-~~~G~~l~~~l~~~l~~~~~---- 184 (576)
+.. ++.+...+ ...++|+..|..+.++..|+.+..|++.|++++++++.. .++|..+|..++|++.+..+
T Consensus 291 a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~ 370 (400)
T PF03825_consen 291 AYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGM 370 (400)
T ss_pred HHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhh
Confidence 887 45444333 345799999999999999999999999999999998765 68999999999999988654
Q ss_pred -hhHHHHHHhHHHHHHHHHH-HhhccCC
Q 008137 185 -TWRWMLGVAGLPAVVQFGL-MMMLPES 210 (576)
Q Consensus 185 -~Wr~~f~v~~~~~~~~~~~-~~~l~es 210 (576)
.|...+.+.+.+.++..++ +++++|+
T Consensus 371 ~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 371 FDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 2556666766666665555 4445543
No 202
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.96 E-value=3.5e-08 Score=107.83 Aligned_cols=159 Identities=14% Similarity=0.035 Sum_probs=113.8
Q ss_pred HHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc-cCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137 289 QFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDK-YGRRRLMIVSMFGLSSCLVALAVVFFQA 367 (576)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk-~grr~~~~~~~~~~~~~~~~~~~~~~~~ 367 (576)
.-.+++....+.+.|+++..+.+..++............+..+++|+++|| +|||+++..+.++..++.+++.+....
T Consensus 26 er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~- 104 (489)
T PRK10207 26 ERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK- 104 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 444556666677777766555466677666666666677777899999999 999999999999999888777654210
Q ss_pred hhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccC
Q 008137 368 AIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISG 447 (576)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (576)
T Consensus 105 -------------------------------------------------------------------------------- 104 (489)
T PRK10207 105 -------------------------------------------------------------------------------- 104 (489)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHH
Q 008137 448 CPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRY--RGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLL 525 (576)
Q Consensus 448 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~ 525 (576)
.....+...+.+.+.+ ...|...++..|.+|++. |+.+.++.....++|.+++|.+.+++.++.||+..|++
T Consensus 105 -----~~ll~~~~~l~~ig~g-~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i 178 (489)
T PRK10207 105 -----PDLIFIALGTIAVGNG-LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNL 178 (489)
T ss_pred -----hhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 0112223333332222 334555688899998774 57789999999999999999999999999999999888
Q ss_pred HHHHHHHHH
Q 008137 526 FAGFSLLGL 534 (576)
Q Consensus 526 ~~~~~~i~~ 534 (576)
.++..+++.
T Consensus 179 ~~i~~~~~~ 187 (489)
T PRK10207 179 CGAGLIIAL 187 (489)
T ss_pred HHHHHHHHH
Confidence 655333333
No 203
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.96 E-value=2e-08 Score=103.67 Aligned_cols=178 Identities=17% Similarity=0.179 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 008137 29 KLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFF 108 (576)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~ 108 (576)
.+.++++-..+.++.+. .+...-..-..++|++..+. .++.-...+..++|++++|++.||+|.|+++.++++++.
T Consensus 254 i~~FLiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~l---ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~ 329 (438)
T COG2270 254 LVLFLIARFFYIDGVNT-ILAMGGVFGAADLGLSSTEL---LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILS 329 (438)
T ss_pred hHHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHH
Confidence 34444444444455542 23333333445999999998 778888888999999999999999999999999999999
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 008137 109 IGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRW 188 (576)
Q Consensus 109 i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~ 188 (576)
+.++..-+......+.+.-.+.|...|+.+..+.+|.++..|+++-++.+|+++...-.+.++||.+-+.+.+..++-|.
T Consensus 330 ~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~ 409 (438)
T COG2270 330 IAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRA 409 (438)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhh
Confidence 99998888888888888889999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHhHHHHHHHHHHHhhccCC
Q 008137 189 MLGVAGLPAVVQFGLMMMLPES 210 (576)
Q Consensus 189 ~f~v~~~~~~~~~~~~~~l~es 210 (576)
-+....++.++.++..+..|+.
T Consensus 410 g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 410 GVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHHhhHhhEEeecCC
Confidence 8888777777777766666654
No 204
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.96 E-value=3.6e-08 Score=97.01 Aligned_cols=178 Identities=22% Similarity=0.200 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 008137 27 IMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVL 106 (576)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~ 106 (576)
||..+..........+ ....++..-|.+++.+|.+.++. ..+.++..+|..+| ++.|.+.|++|.+.++++|.+.
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l---~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~ 75 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQL---NTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVL 75 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHH---HHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHH
Confidence 3554444444444444 45667777889999999999998 89999999999875 8899999999999999999999
Q ss_pred HHHHHHHHHhc-------chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137 107 FFIGAIIMAIA-------PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF 179 (576)
Q Consensus 107 ~~i~~~~~~~~-------~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l 179 (576)
..+|..+..++ .++|.+.+..++.|.+.+.....+.....+.|| ++||.+.|+.-...+++..+-..+...+
T Consensus 76 ~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 76 GFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred HHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHH
Confidence 99998876653 367888888899988887777777777788997 5799999999999999887766666665
Q ss_pred cCCCchhHHHHHHhHHHHHHHHHHHhhccCCh
Q 008137 180 TKAPGTWRWMLGVAGLPAVVQFGLMMMLPESP 211 (576)
Q Consensus 180 ~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp 211 (576)
.+... -+..+.+...+.++.++..++++..|
T Consensus 155 f~~~~-~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 155 FGDDP-SSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred cCCCh-HHHHHHHHHHHHHHHHHHhhheeccC
Confidence 55432 55555555555666555555554443
No 205
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.94 E-value=6.7e-08 Score=99.27 Aligned_cols=156 Identities=13% Similarity=0.014 Sum_probs=118.1
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHh---hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 008137 34 AGIGGLLFGYDTGVISGALLYIKED---FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIG 110 (576)
Q Consensus 34 ~~l~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~ 110 (576)
..++.++.......+....+.+.++ ++.++.+. ++..+.+..+..+|.++.+++.||+|+|+.+.++..+..++
T Consensus 145 ~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a---~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~ 221 (310)
T TIGR01272 145 GALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQA---AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLL 221 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3444444443444555555665543 57777777 99999999999999999999999999999998888888887
Q ss_pred HHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 008137 111 AIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWML 190 (576)
Q Consensus 111 ~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f 190 (576)
.++....++...+ ..-++.|++.+..+|...+...+..|++ .+.+.++. ....+|..+.|++.|.+.+..+ .++.|
T Consensus 222 ~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~~a~ 297 (310)
T TIGR01272 222 SIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQLAF 297 (310)
T ss_pred HHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-chHHH
Confidence 7766665554333 3556899999999999999998888754 45666665 5666899999999999988776 88888
Q ss_pred HHhHHH
Q 008137 191 GVAGLP 196 (576)
Q Consensus 191 ~v~~~~ 196 (576)
++..+.
T Consensus 298 ~v~~~~ 303 (310)
T TIGR01272 298 ALPVPC 303 (310)
T ss_pred HHHHHH
Confidence 754443
No 206
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.93 E-value=6e-09 Score=92.19 Aligned_cols=135 Identities=21% Similarity=0.181 Sum_probs=101.6
Q ss_pred HhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCccc
Q 008137 322 TSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWN 401 (576)
Q Consensus 322 ~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (576)
..++.+++.++.+++.||+|||+.+..+.....++.+.+.....
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 50 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN------------------------------------ 50 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc------------------------------------
Confidence 45667888999999999999999998887777766665443211
Q ss_pred ccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccc
Q 008137 402 CMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSE 481 (576)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 481 (576)
.+...+...+.+.+.+ ...+....+..|
T Consensus 51 ---------------------------------------------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~ 78 (141)
T TIGR00880 51 ---------------------------------------------------ITVLIIARFLQGFGAA-FALVAGAALIAD 78 (141)
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHH-HHHHhHHHHHHH
Confidence 1222333333333332 233456678899
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCC
Q 008137 482 IYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPET 544 (576)
Q Consensus 482 ~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 544 (576)
.+|++.|++..++.+....++..+++.+.+.+.+..+++..+++.+.+.++..+..+++.||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999999999988888888888888888777776666653
No 207
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.93 E-value=6.4e-08 Score=96.44 Aligned_cols=161 Identities=27% Similarity=0.360 Sum_probs=130.6
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhccchh--hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008137 37 GGLLFGYDTGVISGALLYIKEDFRDVEK--KTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM 114 (576)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~ 114 (576)
..+...++........+.+..+++.+.. .. +++.+.+.++..+++++.|++.||+|||+.+..+.....++.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 86 (338)
T COG0477 10 AALLLGLDLGLLSPALPLLLSTLSLSSGRLLY---GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLL 86 (338)
T ss_pred HHHHHHHhcchHHHHHHHHHHHcCCCchhHHH---HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHH
Confidence 3344446777777788888888776553 45 899999999999999999999999999988888887767777788
Q ss_pred Hhcch--HHHHHHHHHHHHhhhhhhhhhHHHHHHhccCc-chhhHHHHHHHH-HHHHHHHHHHHHHHHhcCC-CchhHHH
Q 008137 115 AIAPQ--PWVIILGRIFVGLGVGMASMTAPLYISEASPA-KIRGALVSANGF-LITGGQFLAYLINLAFTKA-PGTWRWM 189 (576)
Q Consensus 115 ~~~~~--~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~-~~R~~~~~~~~~-~~~~G~~l~~~l~~~l~~~-~~~Wr~~ 189 (576)
++..+ .+.+++.|+++|++.+...+....++.|++|+ ++|+...+.... ...+|..+++.+++.+... ..+||+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (338)
T COG0477 87 ALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAA 166 (338)
T ss_pred HhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 88776 99999999999999999999999999999988 678999998888 5888888888777766543 2249997
Q ss_pred HHHhHHHHHHH
Q 008137 190 LGVAGLPAVVQ 200 (576)
Q Consensus 190 f~v~~~~~~~~ 200 (576)
|.+........
T Consensus 167 ~~~~~~~~~~~ 177 (338)
T COG0477 167 FLLAALLGLLL 177 (338)
T ss_pred HHHHHHHHHHH
Confidence 77766655443
No 208
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.92 E-value=3.4e-08 Score=119.18 Aligned_cols=152 Identities=13% Similarity=0.136 Sum_probs=121.7
Q ss_pred hhhHHHHHHHHHH-hhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhc------
Q 008137 45 TGVISGALLYIKE-DFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIA------ 117 (576)
Q Consensus 45 ~~~~~~~~~~i~~-~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~------ 117 (576)
...+...+|.+.+ .++.+.... |++.+.+.++..+++++.|++.|+.++++.+..+.++.+++.+..++.
T Consensus 241 ~~~~~~~~p~~~~~~~g~~~~~~---g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (1140)
T PRK06814 241 GAVVLSQLPLLAKETLGGDENVA---TLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPA 317 (1140)
T ss_pred HHHHHHHhHHHHHHHcCCchHHH---HHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccc
Confidence 3344445666554 467777777 999999999999999999999999888777666666666665545443
Q ss_pred --------------chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008137 118 --------------PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP 183 (576)
Q Consensus 118 --------------~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~ 183 (576)
++.+.+++..++.|++.+...+...+++.+.+|+++||+++|.+++...+|..+++++.+.+....
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~ 397 (1140)
T PRK06814 318 EPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG 397 (1140)
T ss_pred ccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677888889999999999999999999999999999999999999999999999999999887543
Q ss_pred chhHHHHHHhHHHHHH
Q 008137 184 GTWRWMLGVAGLPAVV 199 (576)
Q Consensus 184 ~~Wr~~f~v~~~~~~~ 199 (576)
.+....+++.+++.++
T Consensus 398 ~~~~~~~~~~~~~~~~ 413 (1140)
T PRK06814 398 FSIPWIILFIALANLI 413 (1140)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 3477777665554443
No 209
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.90 E-value=4.9e-08 Score=101.93 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=99.3
Q ss_pred hhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHH-HHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhc--
Q 008137 41 FGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAV-AGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIA-- 117 (576)
Q Consensus 41 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~-~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-- 117 (576)
............|.+.+++|.+..+. +.+.++.. ++..++.+++|++.||+|||+.+.++.++..++..+..+.
T Consensus 221 ~~~~~~~~~~~~~~~l~~~g~~~~~~---g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~ 297 (356)
T TIGR00901 221 YKLGDSAATVLTTLFLLDMGFSKEEI---ALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLAS 297 (356)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHH---HHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445566777777788877777 77776655 6788999999999999999999888888887776655443
Q ss_pred ---------chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHH
Q 008137 118 ---------PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLIT 166 (576)
Q Consensus 118 ---------~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~ 166 (576)
++.+.+....++.|++.+...+...+++.|.+|+++||+.+++.++..+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 298 NGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 4567788889999999999999999999999999999999999887654
No 210
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.90 E-value=3.4e-08 Score=101.89 Aligned_cols=178 Identities=17% Similarity=0.119 Sum_probs=134.6
Q ss_pred hHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHH
Q 008137 278 LYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCL 357 (576)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~ 357 (576)
.+..-...+...+..|..+....+.+-++.+. +..+.+++..++.+.+.+.++..|++.||+|.|+..+.+.+++.+-.
T Consensus 15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~L-S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~ 93 (417)
T COG2223 15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGL-SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPC 93 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHH
Confidence 34445555666666777777777777666666 77888888899999999999999999999999999999998888887
Q ss_pred HHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccc
Q 008137 358 VALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCS 437 (576)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (576)
+.+.+.....
T Consensus 94 ~~~~~a~~~~---------------------------------------------------------------------- 103 (417)
T COG2223 94 LGLAFAVTYP---------------------------------------------------------------------- 103 (417)
T ss_pred HHHHHHccCC----------------------------------------------------------------------
Confidence 7777664311
Q ss_pred cccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008137 438 DEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEAL 517 (576)
Q Consensus 438 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~ 517 (576)
++ |..+ .+.++ .+...+...+....+++-||++.+|.++|++. .+++|..+...+.+.+....
T Consensus 104 -------------~~-~~ll-~~gll-~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~ 166 (417)
T COG2223 104 -------------ST-WQLL-VIGLL-LGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF 166 (417)
T ss_pred -------------ch-HHHH-HHHHH-HhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence 01 2222 22222 22222334455678899999999999999999 99999999999999999998
Q ss_pred c---cchhhHHHHHHHHHHHHHHHhhccC
Q 008137 518 G---SAGTFLLFAGFSLLGLVAIYLLVPE 543 (576)
Q Consensus 518 g---~~~~~~~~~~~~~i~~~~~~~~~~~ 543 (576)
| |+.+..+.....++..+..++...+
T Consensus 167 g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 167 GFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8 8888888888888888777776543
No 211
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.90 E-value=1e-07 Score=102.08 Aligned_cols=182 Identities=14% Similarity=0.060 Sum_probs=129.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137 25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD 104 (576)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~ 104 (576)
..|+.....+.+......-+...+...-..+.++-|.+..+. .++.....+...++.+++.++.||+|||+.++++.
T Consensus 266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a---~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~ 342 (485)
T KOG0569|consen 266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEA---QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISL 342 (485)
T ss_pred chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 344443333333333344444455555667888889888888 78888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc---hHH------HHHHHHHHHHhhhhh-hhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH
Q 008137 105 VLFFIGAIIMAIAP---QPW------VIILGRIFVGLGVGM-ASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYL 174 (576)
Q Consensus 105 ~~~~i~~~~~~~~~---~~~------~l~~~R~l~G~~~g~-~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~ 174 (576)
.+..+..+++.... +.. ..+++.++..++.+. .-|...-+.+|.+|++.|..++++-.+..-+..++-..
T Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~ 422 (485)
T KOG0569|consen 343 SLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGF 422 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 99988888776542 111 123444444433332 35778889999999999999999988888887777666
Q ss_pred HHHHhcCCCchhHHHHHHhHHHHHHHHHH-HhhccCCh
Q 008137 175 INLAFTKAPGTWRWMLGVAGLPAVVQFGL-MMMLPESP 211 (576)
Q Consensus 175 l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp 211 (576)
.-..+.+..|. +.|+...+++.+..+. ++++||+.
T Consensus 423 ~fp~l~~~~g~--~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 423 AFPPLQNVIGP--YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHHHHhcc--hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 66666665553 6777777776666555 77899984
No 212
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.90 E-value=5.4e-08 Score=106.73 Aligned_cols=165 Identities=13% Similarity=-0.039 Sum_probs=109.9
Q ss_pred HHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc-cCChHHHHHHHHHHHHHHHHHHH
Q 008137 284 VQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDK-YGRRRLMIVSMFGLSSCLVALAV 362 (576)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk-~grr~~~~~~~~~~~~~~~~~~~ 362 (576)
...+....+++....+.+.|+++..+.+...+...............+++|+++|| +|||+.+..+.++..++.+++.+
T Consensus 28 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~ 107 (500)
T PRK09584 28 SIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAW 107 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566677778888865544466665555555444444445789999999 59999999998888887666654
Q ss_pred HHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccccccc
Q 008137 363 VFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRT 442 (576)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (576)
...
T Consensus 108 ~~~----------------------------------------------------------------------------- 110 (500)
T PRK09584 108 SGH----------------------------------------------------------------------------- 110 (500)
T ss_pred hcc-----------------------------------------------------------------------------
Confidence 311
Q ss_pred ccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008137 443 YFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRY--RGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSA 520 (576)
Q Consensus 443 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~ 520 (576)
..+...+...+.+.+.+ ...+....+..|.+|++. |+.+.++.+...++|..++|.+.+++.+..||+
T Consensus 111 ---------~~~~l~~~~~l~gig~g-~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~ 180 (500)
T PRK09584 111 ---------DAGIVYMGMATIAVGNG-LFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWS 180 (500)
T ss_pred ---------cHHHHHHHHHHHHHhhh-cccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHH
Confidence 00222222233333322 233455577889997643 445788889999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHH
Q 008137 521 GTFLLFAGFSLLGLV 535 (576)
Q Consensus 521 ~~~~~~~~~~~i~~~ 535 (576)
..|.+.++..+++.+
T Consensus 181 ~~F~i~~i~~~i~~i 195 (500)
T PRK09584 181 VAFALSVVGMLITVV 195 (500)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999887765555443
No 213
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.89 E-value=1.4e-09 Score=112.95 Aligned_cols=159 Identities=17% Similarity=0.047 Sum_probs=128.9
Q ss_pred hhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCC
Q 008137 306 FAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGN 385 (576)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (576)
++.+.+....+++..+..+..++++++.|++.||++|++++.++..+-.++.++-.+..++
T Consensus 61 ~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~F------------------- 121 (493)
T KOG1330|consen 61 TYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHF------------------- 121 (493)
T ss_pred HhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHH-------------------
Confidence 3444577788899999999999999999999999999999999988888887777766432
Q ss_pred CCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHH
Q 008137 386 NTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYII 465 (576)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 465 (576)
|..+++-.+.++
T Consensus 122 --------------------------------------------------------------------wq~~l~R~~vGi 133 (493)
T KOG1330|consen 122 --------------------------------------------------------------------WQVLLCRGFVGI 133 (493)
T ss_pred --------------------------------------------------------------------HHHHHHHHHhcc
Confidence 444444444444
Q ss_pred HhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHhhccCC
Q 008137 466 TYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALG-SAGTFLLFAGFSLLGLVAIYLLVPET 544 (576)
Q Consensus 466 ~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~~~~~~ 544 (576)
+- .++.|+..++++|.+|...|++++++.+++...|..++-+....+.+..+ |++.|...+++.++..++..++.+|.
T Consensus 134 Ge-As~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP 212 (493)
T KOG1330|consen 134 GE-ASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREP 212 (493)
T ss_pred ch-hhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCc
Confidence 33 35667888999999999999999999999999999888888877777766 89999999999999999998888887
Q ss_pred CCCCHHHH
Q 008137 545 KGLAFEEV 552 (576)
Q Consensus 545 ~~~~~~~~ 552 (576)
++++.++.
T Consensus 213 ~rga~~~~ 220 (493)
T KOG1330|consen 213 ERGARDEV 220 (493)
T ss_pred cccccccc
Confidence 76544443
No 214
>PRK09848 glucuronide transporter; Provisional
Probab=98.88 E-value=1.3e-07 Score=102.32 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=103.2
Q ss_pred hHHHHHHHHHH-hhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc--hHHHH
Q 008137 47 VISGALLYIKE-DFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP--QPWVI 123 (576)
Q Consensus 47 ~~~~~~~~i~~-~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l 123 (576)
......|.+.+ .++.+.... ++......++..++.++.+++.||+|+|+.+.++.++..++.++..+.+ +++.+
T Consensus 246 ~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~ 322 (448)
T PRK09848 246 AVSASSLFYVRYVLNDTGLFT---VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVA 322 (448)
T ss_pred HHhhhheeeEeeecCChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHH
Confidence 33344555444 355443332 4445555677888999999999999999999999999888888777754 67777
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHhccCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008137 124 ILGRIFVGLGVGMASMTAPLYISEASPAK-------IRGALVSANGFLITGGQFLAYLINLAFTK 181 (576)
Q Consensus 124 ~~~R~l~G~~~g~~~~~~~~~i~e~~~~~-------~R~~~~~~~~~~~~~G~~l~~~l~~~l~~ 181 (576)
++..++.|+|.+...+...++.+|..|.+ ++|...++++....+|..+|+.+.+.+.+
T Consensus 323 ~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 323 LVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999988754 35899999999999999999998887654
No 215
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.87 E-value=1.9e-07 Score=99.16 Aligned_cols=141 Identities=12% Similarity=0.033 Sum_probs=112.2
Q ss_pred HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhh
Q 008137 55 IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGV 134 (576)
Q Consensus 55 i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~ 134 (576)
+.+.+|.++.+. |++.+...++..+++++.+++.||+++|+.+..+. +.++..++.++.++++...+.-++.|++.
T Consensus 232 ~~~~lg~s~~~~---G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 307 (393)
T PRK11195 232 APVALGITLNQP---AYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALG 307 (393)
T ss_pred HHHHcCCChhHH---HHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 455678877777 99999999999999999999999999998888775 44555555666778887788888999999
Q ss_pred hhhhhhHHHHHHhccCcch-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHH
Q 008137 135 GMASMTAPLYISEASPAKI-RGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVV 199 (576)
Q Consensus 135 g~~~~~~~~~i~e~~~~~~-R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~ 199 (576)
+...+...+.+.+..|++. +|++.++.+....+|..++..+.+.+....-.++..|...+.+...
T Consensus 308 g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (393)
T PRK11195 308 GFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVAL 373 (393)
T ss_pred hhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9888888888888766654 7999999999999999999999987755433455555555555333
No 216
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.86 E-value=8.4e-08 Score=102.90 Aligned_cols=183 Identities=13% Similarity=-0.003 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHHHHHhhHHHHhhhHHHHH-hhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHH
Q 008137 277 GLYAGVTVQVAQQFVGINTVMYYSPTIVQ-FAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSS 355 (576)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~ 355 (576)
+.+....+.+...+..+.......+.+.+ +.+. +..+.+.+..+..+...++.+..|++.||+|.|+++..+.++..+
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~l-s~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i 112 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNF-TTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII 112 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 34555666677777777777766666655 4555 777788888888888889999999999999999999988888777
Q ss_pred HHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccc
Q 008137 356 CLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTL 435 (576)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (576)
..+++.+.....
T Consensus 113 ~~~~~~~a~~~~-------------------------------------------------------------------- 124 (462)
T PRK15034 113 PCVWLGIAVQNP-------------------------------------------------------------------- 124 (462)
T ss_pred HHHHHHHHHccc--------------------------------------------------------------------
Confidence 776665531100
Q ss_pred cccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHH-
Q 008137 436 CSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLT- 514 (576)
Q Consensus 436 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~- 514 (576)
.+.-+..++..++.+++ + +..+.....+++.+|+++||++.|+....+++|..+.+++.+.+.
T Consensus 125 --------------~~s~~~lli~r~l~Gig-g-~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~ 188 (462)
T PRK15034 125 --------------NTPFGIFIVIALLCGFA-G-ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIF 188 (462)
T ss_pred --------------CCCHHHHHHHHHHHHHH-H-HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 00012223333333332 2 233455567889999999999999997777777776666555433
Q ss_pred ----Hhh-------------ccchhhHHHHHHHHHHHHHHHhhccCC
Q 008137 515 ----EAL-------------GSAGTFLLFAGFSLLGLVAIYLLVPET 544 (576)
Q Consensus 515 ----~~~-------------g~~~~~~~~~~~~~i~~~~~~~~~~~~ 544 (576)
+.. +++.+.++...+.++..++.+++.++.
T Consensus 189 ~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~ 235 (462)
T PRK15034 189 VPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI 235 (462)
T ss_pred HHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 322 344555677777777766666665553
No 217
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.84 E-value=1.1e-07 Score=101.62 Aligned_cols=159 Identities=13% Similarity=-0.057 Sum_probs=113.2
Q ss_pred hHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008137 293 INTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAP 372 (576)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (576)
........|.+.++.+. +..+.+.+.....++.+++++..|++.||+|||+.+..+..+.+++.+++.......
T Consensus 19 ~~~~~~l~~~~~~~~~~-s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~----- 92 (410)
T TIGR00885 19 NDITNPMVPQFQQAFTL-TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIM----- 92 (410)
T ss_pred HHhHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhc-----
Confidence 34444566777666665 777888999999999999999999999999999999999999888876654332100
Q ss_pred CccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcc
Q 008137 373 TVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSF 452 (576)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 452 (576)
.
T Consensus 93 -------------------------------------------------------------------------------~ 93 (410)
T TIGR00885 93 -------------------------------------------------------------------------------N 93 (410)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred hhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHh----------------
Q 008137 453 GWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEA---------------- 516 (576)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~---------------- 516 (576)
.+..++..++.+.+.+.. .+....+..+..|++.|++..++.+..+.+|..++|.+.+.+...
T Consensus 94 ~~~~l~~~~l~G~g~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~ 172 (410)
T TIGR00885 94 YTLFLVGLFILTAGLGFL-ETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPE 172 (410)
T ss_pred HHHHHHHHHHHHhhHHHH-HhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHH
Confidence 122233333333333221 233345667788889999999999999999999999998877532
Q ss_pred ----------hccchhhHHHHHHHHHHHHHH
Q 008137 517 ----------LGSAGTFLLFAGFSLLGLVAI 537 (576)
Q Consensus 517 ----------~g~~~~~~~~~~~~~i~~~~~ 537 (576)
.+|+.+|++.+++.++..++.
T Consensus 173 ~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 173 ELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888887766655443
No 218
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.82 E-value=3.2e-08 Score=104.44 Aligned_cols=161 Identities=17% Similarity=0.073 Sum_probs=117.4
Q ss_pred HHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008137 290 FVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAI 369 (576)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (576)
..+...+.+++--++++.+. .+..-|........+.++.-++.+++.+|+|+-+++.+++.+..+=++.+.+...
T Consensus 384 G~g~~lv~tFLfWHled~~~-~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n---- 458 (618)
T KOG3762|consen 384 GAGVGLVFTFLFWHLEDLGG-IKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQN---- 458 (618)
T ss_pred HHHHHHHHHHHHHHHhhcCC-cceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcC----
Confidence 33445555555566777775 4555566777778888899999999999999999999888887777776665532
Q ss_pred cCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCC
Q 008137 370 HAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCP 449 (576)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 449 (576)
T Consensus 459 -------------------------------------------------------------------------------- 458 (618)
T KOG3762|consen 459 -------------------------------------------------------------------------------- 458 (618)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHH-HHHHHHHHHHHHHHHHHHhhccchhhHHHHH
Q 008137 450 SSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAV-SNWTSNLIVSLTFLTLTEALGSAGTFLLFAG 528 (576)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~-~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~ 528 (576)
+|..+-+=.+-++.....+. ...+|++...|++.|.++.|+... ...+|-.+|+++.|.+.+.+|.+.+|.++++
T Consensus 459 ---~W~vLPieilqgit~aliWa-a~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~gi 534 (618)
T KOG3762|consen 459 ---PWMVLPIEILQGITHALIWA-AIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGI 534 (618)
T ss_pred ---chheeeHHHHHHHHHHHHHH-HHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHH
Confidence 23333333333333332222 334788999999999999999854 4577888999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 008137 529 FSLLGLVAIYL 539 (576)
Q Consensus 529 ~~~i~~~~~~~ 539 (576)
.+++.+++...
T Consensus 535 Acl~~l~~~~~ 545 (618)
T KOG3762|consen 535 ACLVTLALFIS 545 (618)
T ss_pred HHHHHHHHHHH
Confidence 88887766543
No 219
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.81 E-value=1.8e-06 Score=96.84 Aligned_cols=153 Identities=15% Similarity=0.261 Sum_probs=123.1
Q ss_pred HHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCchHHHHHHHHHHHHHHHHHHhcch--------H
Q 008137 50 GALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR-FGRKISLLGADVLFFIGAIIMAIAPQ--------P 120 (576)
Q Consensus 50 ~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~--------~ 120 (576)
.+...+.+.++.++... ..+...+....-+..+++|+++|+ +||++.+.++.++..++.++.+++.. .
T Consensus 9 iLvlYl~~~lg~~~~~A---~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~ 85 (654)
T TIGR00926 9 ILVLYFLNFLGFSESTS---TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHD 85 (654)
T ss_pred HHHHHHHHHcCCcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHH
Confidence 34455566788877777 777888888888889999999997 69999999999999999988877521 2
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC------chhHHHHH
Q 008137 121 WVIILGRIFVGLGVGMASMTAPLYISEASPAK---IRGALVSANGFLITGGQFLAYLINLAFTKAP------GTWRWMLG 191 (576)
Q Consensus 121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~---~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~------~~Wr~~f~ 191 (576)
..++++-.+..+|.|++-+...+...|.++++ +|...+.++..+.++|.++++++..++.+.. .+|.+.|.
T Consensus 86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~ 165 (654)
T TIGR00926 86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG 165 (654)
T ss_pred HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence 34667788889999999999999999999754 3677888999999999999999998886332 14999999
Q ss_pred HhHHHHHHHHHHHh
Q 008137 192 VAGLPAVVQFGLMM 205 (576)
Q Consensus 192 v~~~~~~~~~~~~~ 205 (576)
+.++..++.++...
T Consensus 166 i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 166 VPAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888877766644
No 220
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.81 E-value=5.4e-08 Score=109.45 Aligned_cols=219 Identities=15% Similarity=0.025 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Q 008137 281 GVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVAL 360 (576)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~ 360 (576)
......+.+...........+.+-++.+. +..+.+.+.....++.+++.++.+++.||.+||+.+.+++++++++.+++
T Consensus 37 ~~~~~~~~~~~~~g~~~~~l~~iek~F~l-ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 37 LLTCAQLQGLLYNGLVNSSLTTIERRFKL-STSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhhCC-CCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 33334444444444555555666566665 66677888888899999999999999999999999999999999999888
Q ss_pred HHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccc------ccccc
Q 008137 361 AVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDE------KSTDT 434 (576)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 434 (576)
++............ ++ ..+++.-. ..+..|-..+ .+...
T Consensus 116 alphf~~~~y~~~~--------~~-------~~~~~~~~--------------------~~~~~c~~~~~~~~~~~~~~~ 160 (633)
T TIGR00805 116 SLPHFLSGRYSYST--------TV-------SSTGNLSS--------------------ANSFLCMENLTQALRPTQCPS 160 (633)
T ss_pred hChHHhcCCccccc--------cc-------cccccccc--------------------cccccccCCCCCCcccccccc
Confidence 77644221100000 00 00000000 0000110000 00011
Q ss_pred ccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 008137 435 LCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLT 514 (576)
Q Consensus 435 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~ 514 (576)
.|.++... ...+..+++.-++.+.......+...+++.|.+|++.|+...|+.+....+|..+++.+.+.+.
T Consensus 161 ~~~~~~~~--------~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~ 232 (633)
T TIGR00805 161 ECQKQHKE--------SLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCL 232 (633)
T ss_pred ccccccCC--------CceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22222110 1112222222222222233445677789999999999999999999999999999999999887
Q ss_pred Hhh----------------------ccchhhHHHHHHHHHHHHHHHhhccCC
Q 008137 515 EAL----------------------GSAGTFLLFAGFSLLGLVAIYLLVPET 544 (576)
Q Consensus 515 ~~~----------------------g~~~~~~~~~~~~~i~~~~~~~~~~~~ 544 (576)
+.+ +|+..|++.+++.++..+.. ++.|++
T Consensus 233 ~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l-~~~p~~ 283 (633)
T TIGR00805 233 QIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF-FFFPKA 283 (633)
T ss_pred hcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HhCccc
Confidence 643 15556777777777766554 445544
No 221
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.79 E-value=7.2e-08 Score=103.60 Aligned_cols=145 Identities=20% Similarity=0.246 Sum_probs=120.8
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008137 35 GIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM 114 (576)
Q Consensus 35 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~ 114 (576)
.+..++............+.+.++.-..++.. +.+..+..++..++.+++++++||+|+|+++..+.++.+++.++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~---~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~ 307 (428)
T PF13347_consen 231 LLAFFLQWLAFALMNTFLPYYFTYVLGNEGLI---SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLL 307 (428)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHhcCchhh---HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHH
Confidence 34445556666666667777776643333444 888889999999999999999999999999999999999999998
Q ss_pred Hhcc--hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008137 115 AIAP--QPWVIILGRIFVGLGVGMASMTAPLYISEASPAK-------IRGALVSANGFLITGGQFLAYLINLAFTKA 182 (576)
Q Consensus 115 ~~~~--~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~-------~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~ 182 (576)
.+.+ +.+.+++.-++.|++.+...+...++++|..+.+ +.|...+.++...-+|..++..+.+.+.+.
T Consensus 308 ~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 308 FFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred HHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 8886 9999999999999999999999999999988733 348889999999999999999988877543
No 222
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.78 E-value=3.4e-08 Score=100.18 Aligned_cols=147 Identities=18% Similarity=0.144 Sum_probs=107.4
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCc
Q 008137 311 SKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPA 390 (576)
Q Consensus 311 ~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (576)
+...+|++...+.+...+.++..|.++||+|||.++..+++..++...+.+....
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~------------------------- 120 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN------------------------- 120 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 5667889999999999999999999999999999999999888887776665533
Q ss_pred ccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCC
Q 008137 391 YITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPG 470 (576)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 470 (576)
..+++. .-+..+..=+
T Consensus 121 ---------------------------------------------------------------F~afv~-aR~l~Gi~kg 136 (451)
T KOG2615|consen 121 ---------------------------------------------------------------FAAFVL-ARFLGGIFKG 136 (451)
T ss_pred ---------------------------------------------------------------HHHHHH-HHHhhhhccC
Confidence 211222 1222233234
Q ss_pred cccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH---hhccchhhH---HHHHHHHHHHHHHHhhccCC
Q 008137 471 MGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE---ALGSAGTFL---LFAGFSLLGLVAIYLLVPET 544 (576)
Q Consensus 471 ~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~---~~g~~~~~~---~~~~~~~i~~~~~~~~~~~~ 544 (576)
...+..++++|++++++|+.+++..+....+|-++||.+.|++.+ ..|.+..++ +..+++........+++|||
T Consensus 137 nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 137 NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET 216 (451)
T ss_pred chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 445677899999999999999999999999999999999999988 445443222 22222222234445678988
Q ss_pred CC
Q 008137 545 KG 546 (576)
Q Consensus 545 ~~ 546 (576)
-.
T Consensus 217 L~ 218 (451)
T KOG2615|consen 217 LP 218 (451)
T ss_pred cc
Confidence 44
No 223
>PRK10133 L-fucose transporter; Provisional
Probab=98.72 E-value=5.9e-07 Score=96.90 Aligned_cols=139 Identities=12% Similarity=-0.066 Sum_probs=110.2
Q ss_pred HHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhh
Q 008137 56 KEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVG 135 (576)
Q Consensus 56 ~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g 135 (576)
.+.+|.++.+. ++..+.+.++..++.++.|++.||+|||+++..+.++..++.++..+.++.+ -+..-.+.|++.+
T Consensus 287 ~~~~g~s~~~a---g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~ 362 (438)
T PRK10133 287 EEIPGMTAGFA---ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMS 362 (438)
T ss_pred hhcCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHH
Confidence 34678888888 9999999999999999999999999999999998888777777766666643 3456788999999
Q ss_pred hhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHH
Q 008137 136 MASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQ 200 (576)
Q Consensus 136 ~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~ 200 (576)
..+|...+...|..|+ +.+.+.++..+ ..+|..+++++.+.+.+..++-|..|++..+..+..
T Consensus 363 ~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~ 425 (438)
T PRK10133 363 IQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_pred HHHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 9999999999998865 45677777764 446788888888888876543677777655544433
No 224
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.72 E-value=2.2e-07 Score=101.21 Aligned_cols=136 Identities=13% Similarity=0.184 Sum_probs=102.3
Q ss_pred hhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh-----c
Q 008137 43 YDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAI-----A 117 (576)
Q Consensus 43 ~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~ 117 (576)
..........+++.+....+.... +++.++..++..++.+++++++||+|+|+.+.++.++..++.+...+ .
T Consensus 245 ~~~~~~~~~~~y~~~y~~~~~~~~---~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (473)
T PRK10429 245 IASNIINGFAIYYFTYVIGDADLF---PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAP 321 (473)
T ss_pred HHHHHHhhheeeEEEEECCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 344444445555555443333333 67777777899999999999999999999999888877766655432 3
Q ss_pred chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCc-------chhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008137 118 PQPWVIILGRIFVGLGVGMASMTAPLYISEASPA-------KIRGALVSANGFLITGGQFLAYLINLAFTK 181 (576)
Q Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~-------~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~ 181 (576)
.+.+.+++.-++.|++.+...+...++++|..+. +..|..++......-+|..+++.+.+.+.+
T Consensus 322 ~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 322 HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788899999999999999999999652 223668899999999999999998888764
No 225
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=98.68 E-value=1.4e-07 Score=98.07 Aligned_cols=136 Identities=13% Similarity=0.190 Sum_probs=103.0
Q ss_pred hhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----ccCchHHHHH-HHHHHHHHHHHHH
Q 008137 41 FGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWIND----RFGRKISLLG-ADVLFFIGAIIMA 115 (576)
Q Consensus 41 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~d----r~Grr~~~~~-~~~~~~i~~~~~~ 115 (576)
..+....=....+++.++.|++.+-. +.+--...+...+.|++.|..+| ||||||.++. +.+...++.++..
T Consensus 44 vqf~wA~elsy~tPyl~~lGvphk~~---S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig 120 (498)
T KOG0637|consen 44 VQFGWALELSYLTPYLQSLGVPHKWS---SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIG 120 (498)
T ss_pred HHHHHHHHhccccHHHHHcCCCcccc---cccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhh
Confidence 34444444456778888999887776 77878888888889999999999 5899776655 4455566666776
Q ss_pred hcch-----------------HHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhH-HHHHHHHHHHHHHHHHHHHHH
Q 008137 116 IAPQ-----------------PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGA-LVSANGFLITGGQFLAYLINL 177 (576)
Q Consensus 116 ~~~~-----------------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~-~~~~~~~~~~~G~~l~~~l~~ 177 (576)
++.+ ...++++--+.=++.-.....+.++++|.....+|.+ +.+++....++|..+|+.+++
T Consensus 121 ~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 121 YAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 6543 2344555555566777788889999999997777666 999999999999999999988
Q ss_pred Hh
Q 008137 178 AF 179 (576)
Q Consensus 178 ~l 179 (576)
++
T Consensus 201 y~ 202 (498)
T KOG0637|consen 201 YL 202 (498)
T ss_pred cc
Confidence 44
No 226
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.67 E-value=5.2e-07 Score=97.44 Aligned_cols=182 Identities=12% Similarity=-0.002 Sum_probs=117.3
Q ss_pred hhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhc----ccCChHHHHHH-HHHHHHHHHHHHHHHHH
Q 008137 292 GINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVD----KYGRRRLMIVS-MFGLSSCLVALAVVFFQ 366 (576)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d----k~grr~~~~~~-~~~~~~~~~~~~~~~~~ 366 (576)
++.....+.+.|++..+. +....+.+.....+.+++..++.|+++| |+|||+.++.+ .+..+++++++.+....
T Consensus 19 ~~~l~~~~l~~yl~~lg~-~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~ 97 (477)
T TIGR01301 19 GWALQLSLLTPYVQELGI-PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADI 97 (477)
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchh
Confidence 456666777778888777 7778888888888899999999999999 59999988764 55555555554443211
Q ss_pred hhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccccccccccc
Q 008137 367 AAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFIS 446 (576)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (576)
...-.... + +..+.+
T Consensus 98 ~~~~~~~~--------------------------------------------------------~------~~~~~~--- 112 (477)
T TIGR01301 98 GHLFGDNL--------------------------------------------------------D------KKTKPR--- 112 (477)
T ss_pred hhhccccc--------------------------------------------------------c------ccchhH---
Confidence 00000000 0 000000
Q ss_pred CCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccccccc--ccchhHHHHHHHHHHHHHHHHHHHH--HHhh-----
Q 008137 447 GCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYR--GVGGGIAAVSNWTSNLIVSLTFLTL--TEAL----- 517 (576)
Q Consensus 447 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--g~~~g~~~~~~~~g~~~~~~~~~~l--~~~~----- 517 (576)
..+..++.+.+..+....... ...++.+|+.|+++| +.+.++.+....+|+++++.+.+.. .+..
T Consensus 113 -----~i~~~~i~~~lld~~~n~~~~-p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~ 186 (477)
T TIGR01301 113 -----AIIVFVVGFWILDVANNMLQG-PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKT 186 (477)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHH-HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccc
Confidence 002223333333333333333 345788999998865 5789999999999999999887754 2221
Q ss_pred --------ccchhhHHHHHHHHHHHHHHHhhccCCC
Q 008137 518 --------GSAGTFLLFAGFSLLGLVAIYLLVPETK 545 (576)
Q Consensus 518 --------g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 545 (576)
+.+..|++.+++.+++.++..+..+|..
T Consensus 187 ~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 187 EACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 4456788888888888888888888864
No 227
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=98.67 E-value=0.00039 Score=74.98 Aligned_cols=175 Identities=9% Similarity=-0.008 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchh--hhHHHHHHHHHHHHHHHHH-HHHHHHhhhccCchHHHHHHHH
Q 008137 29 KLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEK--KTWLQELIVSMAVAGAIFG-AGFGGWINDRFGRKISLLGADV 105 (576)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~g~i~s~~~~~~~i~-~~~~G~l~dr~Grr~~~~~~~~ 105 (576)
+.+..+.+..|+..+..+. +-++.+.+..+.. ......++.+...+...+. .++.+++++|++|++.+-+...
T Consensus 7 ~k~~~~~l~fF~il~~Y~i----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~ 82 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYTI----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS 82 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence 3344444444444444333 4556666655322 1223378888887776666 8999999999999999888777
Q ss_pred HHHHHHHHHHhc----c---------------------------hHHHHHHHHHHHHhhhhhhhh-hHHHHHHhccCcch
Q 008137 106 LFFIGAIIMAIA----P---------------------------QPWVIILGRIFVGLGVGMASM-TAPLYISEASPAKI 153 (576)
Q Consensus 106 ~~~i~~~~~~~~----~---------------------------~~~~l~~~R~l~G~~~g~~~~-~~~~~i~e~~~~~~ 153 (576)
.+.....+.++. + +.|...++-...-+-...... .-..++.|.+..+|
T Consensus 83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q 162 (472)
T TIGR00769 83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE 162 (472)
T ss_pred HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 776666665554 1 123333444444554444444 67788999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCchhH----HHHHHhHHHHHHHHHHHhhc
Q 008137 154 RGALVSANGFLITGGQFLAYLINLAFTK-------APGTWR----WMLGVAGLPAVVQFGLMMML 207 (576)
Q Consensus 154 R~~~~~~~~~~~~~G~~l~~~l~~~l~~-------~~~~Wr----~~f~v~~~~~~~~~~~~~~l 207 (576)
-.|..++++.+.++|.++++.+..++.+ ..+.|. ..+.+.++.+++...+..++
T Consensus 163 akRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l 227 (472)
T TIGR00769 163 AKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWV 227 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888762 233463 34444444444444444443
No 228
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.64 E-value=4.2e-07 Score=88.65 Aligned_cols=176 Identities=12% Similarity=0.110 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 008137 27 IMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVL 106 (576)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~ 106 (576)
..+++.++|+...+..+.+...++. .+++.||.+..+. +-+.+....-.++.++++|.++|++|++...+.+..+
T Consensus 265 pfw~~~iicv~yyva~fPFi~lg~~--fF~~rfGlS~~~a---~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~ 339 (459)
T KOG4686|consen 265 PFWVLVIICVLYYVAWFPFITLGPM--FFQKRFGLSAVSA---GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACI 339 (459)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHH--HHHHhhCCChhhc---cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHH
Confidence 3456666777766666666555543 4678999998888 8888887777888899999999999999776665554
Q ss_pred HH-HHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 008137 107 FF-IGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGT 185 (576)
Q Consensus 107 ~~-i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~ 185 (576)
.. ++-....| +++.=.....++|++...........++-..|.++.|.+.+..+...++|..+.+++++.+.+..++
T Consensus 340 ~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~ 417 (459)
T KOG4686|consen 340 LTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGS 417 (459)
T ss_pred HHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCc
Confidence 43 33333333 2333345677888888777666778888889999999999999999999999999999999987664
Q ss_pred hHH---HHHHhHHHHHHHHHHHhhccC
Q 008137 186 WRW---MLGVAGLPAVVQFGLMMMLPE 209 (576)
Q Consensus 186 Wr~---~f~v~~~~~~~~~~~~~~l~e 209 (576)
+-+ .|+..+.+++....+.+++.+
T Consensus 418 y~~le~ffl~~~~~aL~svgil~~~N~ 444 (459)
T KOG4686|consen 418 YDNLEAFFLIIGLMALTSVGILFYLNK 444 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhheec
Confidence 333 344455566666666665543
No 229
>PTZ00207 hypothetical protein; Provisional
Probab=98.62 E-value=1.2e-06 Score=96.83 Aligned_cols=165 Identities=12% Similarity=0.109 Sum_probs=104.8
Q ss_pred hHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008137 293 INTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAP 372 (576)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (576)
.+.+..+.+.+.++.+. +..+.+.+..+.... ....++.|++.||+|+|+++.++.++..++.++..+...... .
T Consensus 43 ~y~fsv~s~~L~~~lgl-s~~~l~~i~svg~~~-g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i--~- 117 (591)
T PTZ00207 43 MYAFNLISGAMQARYNL-TQRDLSTITTVGIAV-GYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI--E- 117 (591)
T ss_pred HHHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc--c-
Confidence 34556677777777776 555666555443332 345667899999999999999999999999887776422100 0
Q ss_pred CccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcc
Q 008137 373 TVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSF 452 (576)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 452 (576)
..
T Consensus 118 ------------------------------------------------------------------------------~s 119 (591)
T PTZ00207 118 ------------------------------------------------------------------------------GS 119 (591)
T ss_pred ------------------------------------------------------------------------------Cc
Confidence 00
Q ss_pred hhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH
Q 008137 453 GWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLL 532 (576)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i 532 (576)
.|...+..++.+.+.+ ...+.....+.+.+| +.||.+.|+......+|+++.+.+...+.. .++...|++.+++.++
T Consensus 120 ~~~l~l~r~l~G~G~~-~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~v 196 (591)
T PTZ00207 120 VVRLSVYNGLMTLGCM-LFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALV 196 (591)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 1233333333333322 122233345677886 789999999999999999865555554444 3455677777777777
Q ss_pred HHHHHHhhccC
Q 008137 533 GLVAIYLLVPE 543 (576)
Q Consensus 533 ~~~~~~~~~~~ 543 (576)
..++.+.+++.
T Consensus 197 v~ll~~~~vr~ 207 (591)
T PTZ00207 197 VGILAIVFMRL 207 (591)
T ss_pred HHHHHHhheeC
Confidence 66666665543
No 230
>PRK09669 putative symporter YagG; Provisional
Probab=98.61 E-value=1.4e-06 Score=94.22 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q 008137 70 ELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAI--APQPWVIILGRIFVGLGVGMASMTAPLYISE 147 (576)
Q Consensus 70 g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~--~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e 147 (576)
+.+.....+...++.+++++++||+|+|+.+..+.++..+..+...+ .++.+.+++..++.|++.+...+...++++|
T Consensus 267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad 346 (444)
T PRK09669 267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD 346 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666777888899999999999999999999888766654443333 3567778888899999999999999999999
Q ss_pred ccCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008137 148 ASPAK-------IRGALVSANGFLITGGQFLAYLINLAFTKAP 183 (576)
Q Consensus 148 ~~~~~-------~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~ 183 (576)
..+.+ ..|...+.++....+|..+|+.+++.+.+..
T Consensus 347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88622 2367788899999999999999998876543
No 231
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=98.60 E-value=0.00023 Score=75.86 Aligned_cols=310 Identities=12% Similarity=0.025 Sum_probs=161.4
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHhhcc-chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 008137 32 LSAGIGGLLFGYDTGVISGALLYIKEDFRD-VEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIG 110 (576)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~ 110 (576)
..++++.++...+.-+.....+.+..+... +--.. +...-.-.+..++.++..|.+.||..|.++...+++..-++
T Consensus 5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~---siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~s 81 (432)
T PF06963_consen 5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPV---SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLS 81 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHH
Confidence 345677777777777788888887776632 21122 33444455566777888899999999988877776554332
Q ss_pred HHHHH------hcc------hHHHHHHHHHHHHhhhhhhh---hhH--HHHHHhcc------CcchhhHHHHHHHHHHHH
Q 008137 111 AIIMA------IAP------QPWVIILGRIFVGLGVGMAS---MTA--PLYISEAS------PAKIRGALVSANGFLITG 167 (576)
Q Consensus 111 ~~~~~------~~~------~~~~l~~~R~l~G~~~g~~~---~~~--~~~i~e~~------~~~~R~~~~~~~~~~~~~ 167 (576)
..+.+ +.. +-+....+..+. +..|... ..+ .+.=.||. +++.+.+..+...-.--+
T Consensus 82 v~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ 160 (432)
T PF06963_consen 82 VAASCALFLLLLSYPSSSSQSSWLFIALFALL-ILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLF 160 (432)
T ss_pred HHHHHHHHHHHHhCCccccccchHHHHHHHHH-HHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHH
Confidence 22211 111 112222222111 1111111 111 11123442 233345555555555566
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHH-Hhhc----cCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHH
Q 008137 168 GQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGL-MMML----PESPRWLYRQNKVDEARAILEKIYPADQVEEEVNL 242 (576)
Q Consensus 168 G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~-~~~l----~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 242 (576)
.-+++|++.|.+....+ .+...++.+...++.++. ++++ ...|. +..+++.++........ ...+...+...
T Consensus 161 ckllaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 237 (432)
T PF06963_consen 161 CKLLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEE-SSSESSSDPSI 237 (432)
T ss_pred HHHHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCcccccccccc-ccccccchhhH
Confidence 78899999999988766 888888888877777665 3332 22232 22221111110000000 00000000000
Q ss_pred HHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHH
Q 008137 243 LKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVT 322 (576)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (576)
.+ ...+ ..+.....++..++++.+.. .+...+..+.. -.+...+..|+...|. +....+..-...
T Consensus 238 ~~-~~~~-------~~~~~~~~w~~Y~~q~vfla-----s~alalLY~TV-Lsf~~lmt~yl~~~G~-s~~~igi~R~~g 302 (432)
T PF06963_consen 238 LK-RLWN-------PLRTIIRGWRTYFRQPVFLA-----SFALALLYFTV-LSFGGLMTAYLKSQGY-SPSVIGIFRGLG 302 (432)
T ss_pred HH-HHHH-------HHHHHhccHHHHHhCHHHHH-----HHHHHHHHHHH-hcCcHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 00 0000 00011133444444443322 22222222222 2234445566777766 777778888888
Q ss_pred hHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHH
Q 008137 323 SGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVV 363 (576)
Q Consensus 323 ~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~ 363 (576)
.+.++.|.++..++.+|+|..+.-.++...-..++.+....
T Consensus 303 av~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~ 343 (432)
T PF06963_consen 303 AVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVS 343 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998887777766665555544433
No 232
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.60 E-value=3.9e-07 Score=100.51 Aligned_cols=143 Identities=18% Similarity=0.158 Sum_probs=110.7
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCc
Q 008137 311 SKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPA 390 (576)
Q Consensus 311 ~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (576)
+.....+...+..++.++|.++.|.++||+|||+++++++++..++.++.++....
T Consensus 116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~------------------------ 171 (521)
T KOG0255|consen 116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNY------------------------ 171 (521)
T ss_pred cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcH------------------------
Confidence 55666677788899999999999999999999999999999998888766665331
Q ss_pred ccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCC
Q 008137 391 YITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPG 470 (576)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 470 (576)
+...+.-++.+ .+..+
T Consensus 172 ---------------------------------------------------------------~~~~~~Rfl~G-~~~~~ 187 (521)
T KOG0255|consen 172 ---------------------------------------------------------------WMFLIFRFLSG-FFGSG 187 (521)
T ss_pred ---------------------------------------------------------------HHHHHHHHHHH-hhccc
Confidence 22233333333 33335
Q ss_pred cccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCC
Q 008137 471 MGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETK 545 (576)
Q Consensus 471 ~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 545 (576)
...+.+.+..|.++++.|+.+..+ ....+.++.+++...+++.. +|+..+++..+..++.+++ +++.||.+
T Consensus 188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence 555677888999999999999999 88889999999999998887 7888888888877776666 55565764
No 233
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.60 E-value=3e-06 Score=85.98 Aligned_cols=175 Identities=20% Similarity=0.181 Sum_probs=135.2
Q ss_pred hhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchHH
Q 008137 21 VWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF-GRKIS 99 (576)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~-Grr~~ 99 (576)
.|+++.-|.+.+...+-.+. .+..-.-+|.|..|-|.+..+. |++.+...+.....++....+++|. .+|+.
T Consensus 204 vw~~~~aW~vtLfmGlqS~~----~Y~~~~WLP~ili~~G~sa~~a---G~llsl~~l~~~~~~ll~P~la~R~~n~r~~ 276 (395)
T COG2807 204 VWRSPLAWQVTLFMGLQSLL----YYIVIGWLPAILIDRGLSAAEA---GSLLSLMQLAQLPTALLIPLLARRSKNQRPL 276 (395)
T ss_pred cccCchhHHHHHHHHhhHHH----HHHHHHHHHHHHHHcCCCHHHh---hhHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 45566667666655554443 3444455899999999999999 9999999999999999999999975 57888
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchh-hHHHHHHHHHHHHHHHHHHHHHHH
Q 008137 100 LLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIR-GALVSANGFLITGGQFLAYLINLA 178 (576)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R-~~~~~~~~~~~~~G~~l~~~l~~~ 178 (576)
.+...+++.++.+.+.+.+.-..+.- -++.|+|.|+.++.+.+.+.+..+..++ ++..+..|....+=...||.+.|+
T Consensus 277 ~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~ 355 (395)
T COG2807 277 VVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGF 355 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhH
Confidence 88888888888888878775443333 4999999999999999999999865554 444455554444445578999999
Q ss_pred hcCCCchhHHHHHHhHHHHHHHHHH
Q 008137 179 FTKAPGTWRWMLGVAGLPAVVQFGL 203 (576)
Q Consensus 179 l~~~~~~Wr~~f~v~~~~~~~~~~~ 203 (576)
+.|..++|+..+.......++..+.
T Consensus 356 lhDa~gsw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 356 LHDATGSWSAPLVLLALATLLMLIF 380 (395)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHH
Confidence 9999999999988887777665555
No 234
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=5.4e-08 Score=99.28 Aligned_cols=150 Identities=17% Similarity=0.055 Sum_probs=120.8
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCc
Q 008137 311 SKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPA 390 (576)
Q Consensus 311 ~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (576)
...+.+.+.....+.+++..++.|.+.||+|+|..+++|+.++..+.+++++....
T Consensus 104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy------------------------ 159 (464)
T KOG3764|consen 104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSY------------------------ 159 (464)
T ss_pred cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchh------------------------
Confidence 56677889999999999999999999999999999999999999999888876431
Q ss_pred ccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCC
Q 008137 391 YITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPG 470 (576)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 470 (576)
+..+++-.+-+.+....
T Consensus 160 ---------------------------------------------------------------~~l~vAR~LQgvgsA~~ 176 (464)
T KOG3764|consen 160 ---------------------------------------------------------------PMLFVARSLQGVGSAFA 176 (464)
T ss_pred ---------------------------------------------------------------HHHHHHHHHhhhhHHHH
Confidence 22233333333333322
Q ss_pred cccccchhccccccccc-cccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCC
Q 008137 471 MGTAPWIVNSEIYPLRY-RGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLA 548 (576)
Q Consensus 471 ~~~~~~~~~~e~~p~~~-rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 548 (576)
.....++++|.||.+. |+.++|+.-.+..+|-.++|.+.|.++|..|++.+|++.++++++...+-++.++.++..+
T Consensus 177 -~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 177 -DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred -HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 2345578889998765 6999999999999999999999999999999999999999999998888777666555443
No 235
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=98.59 E-value=8.4e-06 Score=85.35 Aligned_cols=135 Identities=18% Similarity=0.178 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhcc
Q 008137 70 ELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEAS 149 (576)
Q Consensus 70 g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~ 149 (576)
+.+.-+-.+...+.-+.+.++.+|+..+.=..+..+++.++.++.+++++.+.-+++-.+.+++.|........+.+ .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 44556666777777788888999887655556667788889999999999999999999999999988888777644 55
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHh-hccC
Q 008137 150 PAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMM-MLPE 209 (576)
Q Consensus 150 ~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~-~l~e 209 (576)
++ ...+.+..+.+.++++|+..-..+....-+-|..+++...+.++..+.++ .+|.
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 53 35788888999899999887777766322357778777776665555544 4443
No 236
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.56 E-value=2.9e-07 Score=92.98 Aligned_cols=131 Identities=17% Similarity=0.104 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHH
Q 008137 78 AGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGAL 157 (576)
Q Consensus 78 ~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~ 157 (576)
+.-.-|.++.+++.||+|||+++..+.+++++..++.-.+.+-....+.-|..-.+..+.+.+++.|..|.+|.+-|+..
T Consensus 392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatg 471 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATG 471 (528)
T ss_pred HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcc
Confidence 44556788999999999999999999999999999888876543333333333334444566788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhhccCCh
Q 008137 158 VSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESP 211 (576)
Q Consensus 158 ~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp 211 (576)
.|.-....-+|.++.|+++ ...+. +-..+..+.+.+.++..+...++|-.+
T Consensus 472 vGtcSsmaRIggI~~p~iA-~~~e~--s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 472 VGTCSSMARIGGIFSPVIA-MRAEL--STSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred hhhhhhHHhhhhhhhhHHH-HHhcc--ceeehHHHHHHHHHHHHHHheeeeecc
Confidence 9999999999999999999 33332 244666777777777777777777543
No 237
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.53 E-value=1.4e-06 Score=93.92 Aligned_cols=148 Identities=17% Similarity=0.067 Sum_probs=119.6
Q ss_pred CchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCC
Q 008137 310 ASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCP 389 (576)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (576)
.+..+-+++......+.+++.+.+|++.||+|-|+++..+.++.+++.++..+.....
T Consensus 70 ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~---------------------- 127 (466)
T KOG2532|consen 70 WSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG---------------------- 127 (466)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc----------------------
Confidence 3666777888888999999999999999999999999999999998888887775421
Q ss_pred cccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcC
Q 008137 390 AYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSP 469 (576)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 469 (576)
.+..++.-++-+.+.+
T Consensus 128 ---------------------------------------------------------------~~~~~~~R~lqGl~~g- 143 (466)
T KOG2532|consen 128 ---------------------------------------------------------------FYLLLVLRFLQGLGQG- 143 (466)
T ss_pred ---------------------------------------------------------------chhhHHHHHHhHHHHh-
Confidence 1323333344443333
Q ss_pred CcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHh-hccchhhHHHHHHHHHHHHHHHhhccC
Q 008137 470 GMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEA-LGSAGTFLLFAGFSLLGLVAIYLLVPE 543 (576)
Q Consensus 470 ~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~~ 543 (576)
...|....+.+.-.|+++|++..++......+|.++.-++.|.+.+. .||+..|++.+++.++..++.+++..+
T Consensus 144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 144 VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 33456667889999999999999999999999999999999999999 999999999999999987776665543
No 238
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.51 E-value=5.9e-07 Score=98.71 Aligned_cols=153 Identities=20% Similarity=0.156 Sum_probs=105.1
Q ss_pred HhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Q 008137 297 MYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQ 376 (576)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (576)
...++.+.++.|. + ....++.....++..++.++.|.++|.+|||+.++.+.++..++.+..+.....
T Consensus 64 a~~l~~I~~diG~-~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~---------- 131 (599)
T PF06609_consen 64 ASILPYINADIGG-S-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNM---------- 131 (599)
T ss_pred HHHHHHHHHhcCC-C-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcH----------
Confidence 3445666677766 3 334455566778888999999999999999999999999988888876644221
Q ss_pred cccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHH
Q 008137 377 IESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLA 456 (576)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 456 (576)
-..
T Consensus 132 -----------------------------------------------------------------------------~~~ 134 (599)
T PF06609_consen 132 -----------------------------------------------------------------------------NTF 134 (599)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 122
Q ss_pred HHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Q 008137 457 VVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVA 536 (576)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~ 536 (576)
+....+.+++. +........++|+.|.+.|+.+.++.....-....+++.+...+..+.+|++.|++.+++..++++.
T Consensus 135 iag~~l~Gvga--G~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 135 IAGMVLYGVGA--GVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL 212 (599)
T ss_pred HHHHHHHHHhh--HHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence 34444444432 3333444567999999999887776665444444456666666666679999999988887777665
Q ss_pred HHhh
Q 008137 537 IYLL 540 (576)
Q Consensus 537 ~~~~ 540 (576)
.+++
T Consensus 213 ~~~f 216 (599)
T PF06609_consen 213 IFFF 216 (599)
T ss_pred HHHH
Confidence 4443
No 239
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=98.49 E-value=2.1e-05 Score=79.94 Aligned_cols=146 Identities=18% Similarity=0.123 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccCchHHHHH
Q 008137 28 MKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWIND-----RFGRKISLLG 102 (576)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~d-----r~Grr~~~~~ 102 (576)
...+..+.+-+++++...+..+ .+|.+.+.=+.+.++. +. .+..+..+.+ -+++.++.| |+|||+.-+.
T Consensus 30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~---a~-fS~ay~P~sL-KllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ---AI-FSFAYWPFSL-KLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhh---hh-hhhhhhHHHH-HHHHHhhhHHHHHHhhccccceee
Confidence 3445555566788999988888 8999999777777666 32 2222222222 578899999 9999886433
Q ss_pred -HHHHHHHHHHHHHh-----------cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHH
Q 008137 103 -ADVLFFIGAIIMAI-----------APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQF 170 (576)
Q Consensus 103 -~~~~~~i~~~~~~~-----------~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~ 170 (576)
+..+.+....+.+. .++...+...-++.-+..+.--.+.-.+.-....+++-|.+......+.+.|.+
T Consensus 104 p~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~Gyf 183 (510)
T KOG3574|consen 104 PCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYF 183 (510)
T ss_pred ehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHH
Confidence 22222222222222 123333444445555656655555666666677788888888888888888877
Q ss_pred HHHHHHHHh
Q 008137 171 LAYLINLAF 179 (576)
Q Consensus 171 l~~~l~~~l 179 (576)
++..+-..+
T Consensus 184 L~~~ifLaL 192 (510)
T KOG3574|consen 184 LGNVVFLAL 192 (510)
T ss_pred hhcceeeEe
Confidence 776655444
No 240
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.49 E-value=5.1e-06 Score=88.32 Aligned_cols=157 Identities=10% Similarity=0.071 Sum_probs=114.2
Q ss_pred HHhhhHHHHHhhcCCchhH-HHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 008137 296 VMYYSPTIVQFAGFASKST-ALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTV 374 (576)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (576)
..+..|.+.++.+. +..+ .+.+...+..+.++..+.+|+++||+|.|+++..+.+...+..+++++....
T Consensus 45 ~s~a~p~L~~elgl-T~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl-------- 115 (511)
T TIGR00806 45 ESFITPYLLTVLNF-TEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSV-------- 115 (511)
T ss_pred HHHHHHHHHHHcCC-CHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 44456666677777 5556 8888888999999999999999999999999999999888888888776331
Q ss_pred cccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchh
Q 008137 375 SQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGW 454 (576)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 454 (576)
+
T Consensus 116 -------------------------------------------------------------------------------~ 116 (511)
T TIGR00806 116 -------------------------------------------------------------------------------W 116 (511)
T ss_pred -------------------------------------------------------------------------------H
Confidence 2
Q ss_pred HHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhH---HHHHHHH
Q 008137 455 LAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFL---LFAGFSL 531 (576)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~---~~~~~~~ 531 (576)
...+.-++++.+-+..+ ....++...+|++.|+++.|+.+....+|.++++++.+. ....||+.-.. +..+...
T Consensus 117 ~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~ 193 (511)
T TIGR00806 117 HMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMT 193 (511)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHH
Confidence 33344444444444333 556788899999999999999999999999999999998 55667765322 2333333
Q ss_pred HHHHHHHhhccCC
Q 008137 532 LGLVAIYLLVPET 544 (576)
Q Consensus 532 i~~~~~~~~~~~~ 544 (576)
+++++. +++|..
T Consensus 194 ~a~~~a-~~LP~~ 205 (511)
T TIGR00806 194 FSVFLA-LFLKRP 205 (511)
T ss_pred HHHHHH-HhCCCC
Confidence 444444 456633
No 241
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.41 E-value=1.1e-06 Score=93.13 Aligned_cols=165 Identities=16% Similarity=0.208 Sum_probs=135.9
Q ss_pred HhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc
Q 008137 39 LLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP 118 (576)
Q Consensus 39 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~ 118 (576)
++.+...+.+-..+---.||.+....-. |........|-++.-++.+++..++|+-+++.+++....+=.+..+..+
T Consensus 381 v~mG~g~~lv~tFLfWHled~~~~~~Lf---Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~ 457 (618)
T KOG3762|consen 381 VVMGAGVGLVFTFLFWHLEDLGGIKTLF---GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ 457 (618)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcceee---eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc
Confidence 3344443443333433456666444444 7777788888888899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHH-HHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHH
Q 008137 119 QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFL-ITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPA 197 (576)
Q Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~-~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~ 197 (576)
|+|+.+...+++|+..+..|.++.+|++...||+-|..+.++.+.. .++|--+|.+++|.+....+ -|..|...++.+
T Consensus 458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAc 536 (618)
T KOG3762|consen 458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIAC 536 (618)
T ss_pred CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988654 67788899999999998887 899999988888
Q ss_pred HHHHHHHhhc
Q 008137 198 VVQFGLMMML 207 (576)
Q Consensus 198 ~~~~~~~~~l 207 (576)
++.++....+
T Consensus 537 l~~l~~~~~i 546 (618)
T KOG3762|consen 537 LVTLALFISI 546 (618)
T ss_pred HHHHHHHHHh
Confidence 8776664443
No 242
>PRK11462 putative transporter; Provisional
Probab=98.37 E-value=5.3e-05 Score=82.29 Aligned_cols=136 Identities=11% Similarity=0.120 Sum_probs=87.7
Q ss_pred hhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc--hH
Q 008137 43 YDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP--QP 120 (576)
Q Consensus 43 ~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~ 120 (576)
......+.....+.+.....+... +.+.+.+.++..++.+++++++||+|+|+.+..+..+.++..++..+.+ +.
T Consensus 242 ~~~~~~~~~~~y~~~y~~g~~~~~---~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (460)
T PRK11462 242 LAVCVRGGAMMYYVTWILGTPEVF---VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQAS 318 (460)
T ss_pred HHHHHHHhHhhhhhhhhcCChHHH---HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHH
Confidence 333333444444444443333333 6677788889999999999999999999887765555444444433332 23
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhccCc-------chhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008137 121 WVIILGRIFVGLGVGMASMTAPLYISEASPA-------KIRGALVSANGFLITGGQFLAYLINLAFTK 181 (576)
Q Consensus 121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~-------~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~ 181 (576)
..+++.-++.|++.+...+...++++|..+. +..|...+......-+|..+++.+.+.+..
T Consensus 319 ~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 319 ITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555777888877777777777777652 222555677777788888888877776654
No 243
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.35 E-value=4.6e-05 Score=79.16 Aligned_cols=190 Identities=18% Similarity=0.285 Sum_probs=142.4
Q ss_pred CCcchHHHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008137 9 ASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGG 88 (576)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G 88 (576)
.++.+..+.+.+.+..+.-.+.+..++++.+.......+. -|+=.+-|+.+..++ ..+.+....|..+|-...|
T Consensus 192 ~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iL---EPygg~Vfgmsv~eT---T~Lta~~~~G~L~G~~~~g 265 (403)
T PF03209_consen 192 RPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVIL---EPYGGEVFGMSVGET---TRLTAFWGGGTLLGMLLAG 265 (403)
T ss_pred CCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHc---CCchhHHcCCCHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3445556666666655555555555555554444443322 244456788999998 8899999999999999999
Q ss_pred Hhhh-ccCchHHHHHHHHHHHHHHHHH---HhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHH
Q 008137 89 WIND-RFGRKISLLGADVLFFIGAIIM---AIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFL 164 (576)
Q Consensus 89 ~l~d-r~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~ 164 (576)
++.. |.++++.-.+++.+..++..+. +...+.+.+...-++.|++.|.....+.+.+.+...+++.|.++|.+...
T Consensus 266 ~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaa 345 (403)
T PF03209_consen 266 FLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAA 345 (403)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHH
Confidence 9888 6777888778877776666554 44468899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCC---------chhHHHHHHhHHHHHHHHHHH
Q 008137 165 ITGGQFLAYLINLAFTKAP---------GTWRWMLGVAGLPAVVQFGLM 204 (576)
Q Consensus 165 ~~~G~~l~~~l~~~l~~~~---------~~Wr~~f~v~~~~~~~~~~~~ 204 (576)
+.+...++..+++.+.|.. .++-.+|.+-+++.++.+++.
T Consensus 346 QA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 346 QAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988876421 136667777666655555443
No 244
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.35 E-value=3.6e-06 Score=91.60 Aligned_cols=150 Identities=11% Similarity=0.193 Sum_probs=119.4
Q ss_pred HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhc----------chHHHHHHH
Q 008137 57 EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIA----------PQPWVIILG 126 (576)
Q Consensus 57 ~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----------~~~~~l~~~ 126 (576)
+.+|.++... |++.....++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.++..
T Consensus 281 ~~lG~s~~~~---G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~ 357 (468)
T TIGR00788 281 QCLPGGPSFS---GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGD 357 (468)
T ss_pred ccCCCCcchh---hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeeh
Confidence 4577888887 999999999999999999999999999999999999999888654311 344455666
Q ss_pred HHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------hhHHHHHH-hHHHHHH
Q 008137 127 RIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG------TWRWMLGV-AGLPAVV 199 (576)
Q Consensus 127 R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~------~Wr~~f~v-~~~~~~~ 199 (576)
-++.+++.+..+.....++++..|+++++...+++++..++|..+++.+++.+.+..| +.+|...+ ..+..++
T Consensus 358 ~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~ 437 (468)
T TIGR00788 358 SIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLL 437 (468)
T ss_pred hHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999998876543 23333333 3333444
Q ss_pred HHHHHhhccC
Q 008137 200 QFGLMMMLPE 209 (576)
Q Consensus 200 ~~~~~~~l~e 209 (576)
.+...+++|+
T Consensus 438 ~l~~~~llP~ 447 (468)
T TIGR00788 438 PLPLLHLLPR 447 (468)
T ss_pred HHHHHHhCCC
Confidence 4444557786
No 245
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.29 E-value=7e-06 Score=90.46 Aligned_cols=140 Identities=15% Similarity=0.053 Sum_probs=106.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccC
Q 008137 316 LALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDG 395 (576)
Q Consensus 316 ~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (576)
+.+.....+++.++.++.|+++|++|||+.+..+.+...++.++.......
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~----------------------------- 142 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSW----------------------------- 142 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH-----------------------------
Confidence 677888899999999999999999999999999999999998888877431
Q ss_pred CCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCccccc
Q 008137 396 NAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAP 475 (576)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (576)
+...+.-++.+++.+... .+.
T Consensus 143 ----------------------------------------------------------~~l~~GR~l~G~g~G~~~-~~~ 163 (513)
T KOG0254|consen 143 ----------------------------------------------------------YQLIVGRILTGLGVGGAS-VLA 163 (513)
T ss_pred ----------------------------------------------------------HHHHHHHHHhccchhhhh-hcc
Confidence 333444444444444332 344
Q ss_pred chhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhh--ccchhhHHHHHHHHHHHHHHHhhccCCC
Q 008137 476 WIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEAL--GSAGTFLLFAGFSLLGLVAIYLLVPETK 545 (576)
Q Consensus 476 ~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~--g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 545 (576)
..+.+|+.|++.||...++.+....+|..++ .+.+...++. +|+..+.+..+.+++..+. .+++||+.
T Consensus 164 piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp 233 (513)
T KOG0254|consen 164 PVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP 233 (513)
T ss_pred hhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 5788999999999999999998888777666 6666666553 7887777777777777666 67788763
No 246
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.28 E-value=3e-05 Score=82.57 Aligned_cols=143 Identities=21% Similarity=0.251 Sum_probs=109.2
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008137 36 IGGLLFGYDTGVISGALLYIKED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM 114 (576)
Q Consensus 36 l~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~ 114 (576)
+..++......+.+.+..++.+. ++.++... .+.......+..++.+++.++.+|+|+|+++.++.+++.++.++.
T Consensus 243 ~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~---~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~ 319 (467)
T COG2211 243 LMNLLLFIAFNIRGSIMVYYVTYVLGDPELFA---YLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLL 319 (467)
T ss_pred HHHHHHHHHHHHHhhhhheeEEEEcCChHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666665443 33444444 677777788888889999999999999999999999999999988
Q ss_pred Hhcc--hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcch-----h--hHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008137 115 AIAP--QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKI-----R--GALVSANGFLITGGQFLAYLINLAFTK 181 (576)
Q Consensus 115 ~~~~--~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~-----R--~~~~~~~~~~~~~G~~l~~~l~~~l~~ 181 (576)
-+.+ +.+.+++..++.+++.+...+...++++|..+-.| | |...+......=+|..++..+.++...
T Consensus 320 ~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 320 YFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred HhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876 78888999999999999999999999887764322 2 677777777777788888777776654
No 247
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.27 E-value=5.2e-06 Score=67.00 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=75.9
Q ss_pred hhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchH
Q 008137 41 FGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP 120 (576)
Q Consensus 41 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~ 120 (576)
.++.+..+.|++|.+++|.+.+..+. |++.+.+++|+.+|++...++.++..+++.+..+++...+..+.+++.+++
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~a---g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~ 80 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQA---GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSF 80 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 57889999999999999999999999 999999999999999999999999888999999999999999999999888
Q ss_pred HHHH
Q 008137 121 WVII 124 (576)
Q Consensus 121 ~~l~ 124 (576)
+.+.
T Consensus 81 ~~w~ 84 (85)
T PF06779_consen 81 WLWS 84 (85)
T ss_pred HHHh
Confidence 7653
No 248
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.20 E-value=1.6e-05 Score=77.21 Aligned_cols=94 Identities=16% Similarity=0.280 Sum_probs=70.8
Q ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 008137 52 LLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVG 131 (576)
Q Consensus 52 ~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G 131 (576)
.-.+-+.++.-..+. |.+.-..+-..++...+.|-++||-|||+.-+.-.+..++++ +.-.+++|-.++++|.+-|
T Consensus 60 vYyLYstYgFgkG~I---gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGG 135 (454)
T KOG4332|consen 60 VYYLYSTYGFGKGDI---GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGG 135 (454)
T ss_pred eeeeehhcCccCCcc---ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhh
Confidence 333445666666666 777777777778888899999999999997665555554443 3455789999999999999
Q ss_pred hhhhhhhhhHHHH-HHhcc
Q 008137 132 LGVGMASMTAPLY-ISEAS 149 (576)
Q Consensus 132 ~~~g~~~~~~~~~-i~e~~ 149 (576)
++.+..+....++ ++|+-
T Consensus 136 iaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 136 IATSLLFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999888777654 67775
No 249
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.20 E-value=2.2e-05 Score=83.13 Aligned_cols=146 Identities=20% Similarity=0.098 Sum_probs=106.8
Q ss_pred CchhHHHHHHHHHhHHHHHHHHHHHHhhccc-CChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCC
Q 008137 310 ASKSTALALSLVTSGLNALGSIVSMAFVDKY-GRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTC 388 (576)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (576)
.++.++..+...+....-+..+++||++||+ |+|+.+..+.+++.++.+++......
T Consensus 58 ~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~---------------------- 115 (498)
T COG3104 58 FDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVS---------------------- 115 (498)
T ss_pred cChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccc----------------------
Confidence 3566665555555555667789999999995 99999999999999999988765200
Q ss_pred CcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhc
Q 008137 389 PAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYS 468 (576)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 468 (576)
......+.+.+...+.+
T Consensus 116 ---------------------------------------------------------------~~~gl~i~L~~I~iG~G 132 (498)
T COG3104 116 ---------------------------------------------------------------GPGGLYIGLALIIVGTG 132 (498)
T ss_pred ---------------------------------------------------------------cccHHHHHHHHHHhccc
Confidence 00122333333333333
Q ss_pred CCcccccchhcccccccc--ccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhc
Q 008137 469 PGMGTAPWIVNSEIYPLR--YRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLV 541 (576)
Q Consensus 469 ~~~~~~~~~~~~e~~p~~--~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 541 (576)
.+=+....+..|++|++ .|-.++++..+..++|++++|++.+++.++.||...|.+.++-..++++..++..
T Consensus 133 -l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 133 -LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred -cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33355567889999754 3666777778888999999999999999999999999998888888888766543
No 250
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=98.18 E-value=9.6e-05 Score=74.48 Aligned_cols=253 Identities=11% Similarity=0.063 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCc
Q 008137 72 IVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPA 151 (576)
Q Consensus 72 i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~ 151 (576)
+.-+..-.+.+.-.+.=.+.|-.--|+++++-.+......++.-+.++.+.+=+.-++.|...+. ..+-++|+-+..++
T Consensus 47 vyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~ 125 (433)
T KOG3810|consen 47 VYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDP 125 (433)
T ss_pred cccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH-HHhhhheeeeecCH
Confidence 34445556667777777899999889999988887888888888999999999999999998774 55678899999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHh
Q 008137 152 KIRGALVSANGFLITGGQFLAYLINLAFTKAPG-TWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKI 230 (576)
Q Consensus 152 ~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~-~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i 230 (576)
+++.++.+.-....-.|..+|..++-.+..... +.+..-.+...-..+.....+++|..+|...-+.+.++. ...+.
T Consensus 126 ~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~--~v~~~ 203 (433)
T KOG3810|consen 126 EMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKI--SVGDL 203 (433)
T ss_pred HHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccc--eeccc
Confidence 999999999999988898888888888765432 133333333333334445556677665443332222210 00000
Q ss_pred CCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhc-C
Q 008137 231 YPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAG-F 309 (576)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 309 (576)
...+......+..+ ......+++++...+++...+.-++..+. ..+++.+.+|...+.++.. .
T Consensus 204 e~~~~~~~~~~~l~-----------~~~~~l~~~l~~~y~np~ll~WSlWwAl~-----scg~~QV~nY~Q~LW~~~~~~ 267 (433)
T KOG3810|consen 204 EEMNPQASYMSYLR-----------GAFVLLWRDLQECYSNPRLLKWSLWWALA-----SCGYYQVTNYTQILWKEVAPN 267 (433)
T ss_pred hhcCccchhhHHHH-----------HHHHHHHHHHHHHhcCchhhhhHHHHHHh-----hchhHHHHHHHHHHHHhhCCC
Confidence 00000000000000 11122335667777777766544443333 3345666666666666553 1
Q ss_pred CchhHHHHHHHHHhHHHHHHHHHHHHhhcccCCh
Q 008137 310 ASKSTALALSLVTSGLNALGSIVSMAFVDKYGRR 343 (576)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr 343 (576)
.....-|..-.+..+.++++.+..|.+.-...|.
T Consensus 268 ~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~ 301 (433)
T KOG3810|consen 268 PANVYNGAVEAVSTLLGAIAALAAGYLNINWNRW 301 (433)
T ss_pred chhhhcCHHHHHHHHHHHHHHHHHHheeeccchh
Confidence 1222234455566667788889999987666665
No 251
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.18 E-value=4.6e-05 Score=78.67 Aligned_cols=162 Identities=12% Similarity=0.016 Sum_probs=127.0
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008137 33 SAGIGGLLFGYDTGVISGALLYIKED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA 111 (576)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~ 111 (576)
.-.++.|+.--.....+..++.+.++ .+.++.+. ....+.+..+.++|.+++-++..|+-..+.+.+..++..+-+
T Consensus 240 ~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~a---a~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~ 316 (422)
T COG0738 240 LGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQA---AYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLL 316 (422)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 33455566666667777788888877 55666666 899999999999999999999999999999999988888888
Q ss_pred HHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 008137 112 IIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLG 191 (576)
Q Consensus 112 ~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~ 191 (576)
+..+++++...+ ..-++.|+..+..+|+..+...+..| +.....|..-....+|+.+-|.+.|++.+..+ -...+.
T Consensus 317 ~~~~l~~g~v~~-~~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g-~~~~~~ 392 (422)
T COG0738 317 LAVALIGGVVAL-YALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFG-IQLTFL 392 (422)
T ss_pred HHHHHhcChHHH-HHHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhh-hHHHHH
Confidence 888888885544 45678899999999999999999998 33445566666677888899999999999877 566666
Q ss_pred HhHHHHHHHH
Q 008137 192 VAGLPAVVQF 201 (576)
Q Consensus 192 v~~~~~~~~~ 201 (576)
....++.+.+
T Consensus 393 ~~pllc~lyV 402 (422)
T COG0738 393 IVPLLCYLYV 402 (422)
T ss_pred HHHHHHHHHH
Confidence 4444454444
No 252
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.16 E-value=8.7e-05 Score=67.72 Aligned_cols=109 Identities=12% Similarity=0.164 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccC
Q 008137 71 LIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASP 150 (576)
Q Consensus 71 ~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~ 150 (576)
.-.++......+++++.+.+.+++|.|+.++++.+.+.+-.... +-++.+.++.+-.+.|++.+..|.....++.+..+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 45566677778888889999999999999999999887554433 45788899999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008137 151 AKIRGALVSANGFLITGGQFLAYLINLAFT 180 (576)
Q Consensus 151 ~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~ 180 (576)
+++|++-.+++......+.++|.++.-.+.
T Consensus 120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 120 EETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888888888877765543
No 253
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.15 E-value=4.9e-06 Score=86.70 Aligned_cols=180 Identities=17% Similarity=0.061 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHH-----HHHHHHH-HHHHHHHHHHHHHHhhhccCchHHHHH
Q 008137 29 KLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWL-----QELIVSM-AVAGAIFGAGFGGWINDRFGRKISLLG 102 (576)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~g~i~s~-~~~~~~i~~~~~G~l~dr~Grr~~~~~ 102 (576)
+.++..+...|+.-+.....+.....|.+.++..+.+... ......+ ...++..|..+...+.|++|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 6677778888888888888888888888887755444311 1111111 222333356667789999999999999
Q ss_pred HHHHHHHHHHHHHhcch--------HHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH
Q 008137 103 ADVLFFIGAIIMAIAPQ--------PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYL 174 (576)
Q Consensus 103 ~~~~~~i~~~~~~~~~~--------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~ 174 (576)
+.+++++..+..+...+ .....+..++.-+|-+. ....+-+|.+|.+-|+..-|+.....-.|.++|..
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~---ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~ 460 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNA---TTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF 460 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCc---eeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence 99999999999998876 12233334444444332 33455689999999999999999999999999999
Q ss_pred HHHHhcC-----CCchhHHHHHHhHHHHHHHHHHHhhccCChh
Q 008137 175 INLAFTK-----APGTWRWMLGVAGLPAVVQFGLMMMLPESPR 212 (576)
Q Consensus 175 l~~~l~~-----~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~ 212 (576)
.-.++.+ ..+ -|+.|++.+...++..+..+++||+.+
T Consensus 461 ~F~~~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 461 GFLYLTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred HhhHhhhccCCcccc-chHHHHHHHHHHHHhHheeEEeecccc
Confidence 8888887 555 899999999999988888888998854
No 254
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.14 E-value=2e-05 Score=85.42 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH------hhccchhhHHHHHHH
Q 008137 457 VVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE------ALGSAGTFLLFAGFS 530 (576)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~------~~g~~~~~~~~~~~~ 530 (576)
++++=++.+.+..+..|....+...-|.++.||..+|+.+....+|+++++++...+.+ ..||++.|++.++++
T Consensus 137 ~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~ 216 (495)
T KOG2533|consen 137 LIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVIT 216 (495)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHH
Confidence 44444455555556667777888999999999999999999999999999999888643 468999999999999
Q ss_pred HHHHHHHHhhccCCCC
Q 008137 531 LLGLVAIYLLVPETKG 546 (576)
Q Consensus 531 ~i~~~~~~~~~~~~~~ 546 (576)
++..+++++++|+...
T Consensus 217 ~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 217 LVLGIVVFFFLPDNPS 232 (495)
T ss_pred HHHHheEEEEecCChh
Confidence 9999888888886544
No 255
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.09 E-value=7.5e-08 Score=103.97 Aligned_cols=145 Identities=20% Similarity=0.111 Sum_probs=100.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccc
Q 008137 314 TALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYIT 393 (576)
Q Consensus 314 ~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (576)
..........++.++|++++|+++||+|||+.+..+.++..++.++..+.....
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~-------------------------- 100 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYN-------------------------- 100 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccc--------------------------
Confidence 456677788889999999999999999999999999988888887766653110
Q ss_pred cCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCccc
Q 008137 394 DGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGT 473 (576)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 473 (576)
..+...+.-++.+++.+ +..+
T Consensus 101 ----------------------------------------------------------~~~~~~~~R~~~G~~~g-~~~~ 121 (451)
T PF00083_consen 101 ----------------------------------------------------------NFWMLLIGRFLIGFGIG-GAYV 121 (451)
T ss_pred ----------------------------------------------------------ccccccccccccccccc-cccc
Confidence 01222333333333333 2344
Q ss_pred ccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHh---hccchhhHHHHHHHHHHHHHHHhhccCC
Q 008137 474 APWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEA---LGSAGTFLLFAGFSLLGLVAIYLLVPET 544 (576)
Q Consensus 474 ~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 544 (576)
....+..|..|++.||...++.+....+|..++..+...+.+. .+|+..+.+.++.+++..+.. .++||+
T Consensus 122 ~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pES 194 (451)
T PF00083_consen 122 VSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPES 194 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 5668889999999999999999988888877776655433332 347777777766666554443 567876
No 256
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.08 E-value=6e-05 Score=74.33 Aligned_cols=140 Identities=19% Similarity=0.136 Sum_probs=97.0
Q ss_pred hhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008137 292 GINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHA 371 (576)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (576)
..+.+..|.|.+-+..+. +..+...+.....++..+| ++.|.+.|++|.+.++.++.....+++.++........ .
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~-sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i-~- 92 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGY-SQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI-P- 92 (250)
T ss_pred cccchhhhhHHHHHHhCC-CHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc-C-
Confidence 456677788888777766 7788888888888877664 88899999999999999999999999887766543110 0
Q ss_pred CCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCc
Q 008137 372 PTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSS 451 (576)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 451 (576)
.
T Consensus 93 ------------------------------------------------------------------------------~- 93 (250)
T PF06813_consen 93 ------------------------------------------------------------------------------S- 93 (250)
T ss_pred ------------------------------------------------------------------------------c-
Confidence 0
Q ss_pred chhHHHHHHHHHHHHhcCCc-ccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008137 452 FGWLAVVFLGAYIITYSPGM-GTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEA 516 (576)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~ 516 (576)
.+.+ ..++..+..+.+.++ .+.......+.|| +.||++.|+.-....+++.+...+...+.+.
T Consensus 94 ~~~~-~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 94 LPVW-LMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred cchH-HHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 0112 222332333333222 2333344557887 5799999999999999998888877766655
No 257
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=97.99 E-value=0.019 Score=62.45 Aligned_cols=156 Identities=12% Similarity=0.049 Sum_probs=98.3
Q ss_pred hchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHH-HHHHHHHHHHHhhhccCchHHH
Q 008137 22 WTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVA-GAIFGAGFGGWINDRFGRKISL 100 (576)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~-~~~i~~~~~G~l~dr~Grr~~~ 100 (576)
+..+..++.+..+++..|+..+..+. +-++.+.+=.+......+..+-....+ +..+...+..+++++++|.+++
T Consensus 17 pi~~~E~~k~~~l~~m~f~i~f~y~~----lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lF 92 (491)
T PF03219_consen 17 PIHRSELKKFLPLALMFFFILFNYTI----LRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLF 92 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 33556677777777777766666543 233333332222222222555554444 4455577899999999999988
Q ss_pred HHHHHHHHHHHHHHHhc---------ch----------------------HHHHHHHHHHHHhhhhhhhh-hHHHHHHhc
Q 008137 101 LGADVLFFIGAIIMAIA---------PQ----------------------PWVIILGRIFVGLGVGMASM-TAPLYISEA 148 (576)
Q Consensus 101 ~~~~~~~~i~~~~~~~~---------~~----------------------~~~l~~~R~l~G~~~g~~~~-~~~~~i~e~ 148 (576)
-+.+..+.....+.++. ++ .|.+.+.-...-+-.....+ .-..+..|.
T Consensus 93 y~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~i 172 (491)
T PF03219_consen 93 YIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEI 172 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 87776666655555552 11 12222333333332222222 346778999
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008137 149 SPAKIRGALVSANGFLITGGQFLAYLINLAFTK 181 (576)
Q Consensus 149 ~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~ 181 (576)
++.+|-.|..++++.+.++|.+++..+...+.+
T Consensus 173 tt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 173 TTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988888877
No 258
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=97.92 E-value=0.048 Score=58.17 Aligned_cols=180 Identities=12% Similarity=0.033 Sum_probs=118.4
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHH-HHHHHHHHHHHhhhccCchHHHH
Q 008137 23 TTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVA-GAIFGAGFGGWINDRFGRKISLL 101 (576)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~-~~~i~~~~~G~l~dr~Grr~~~~ 101 (576)
.+++.++.++.+++.+++..+..+. +-.+.+.+-.+........++-+...+ +..+..++.+++.+++-|.+++-
T Consensus 21 i~r~E~~kflpl~Ll~f~I~~ny~~----lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~ 96 (509)
T COG3202 21 IRRYELKKFLPLALLFFCILFNYNL----LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFY 96 (509)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHH
Confidence 4455666666666666666555443 455666666554444334778888888 77888999999999999999988
Q ss_pred HHHHHHHHHHHHHHhc---------ch-----------------------HHHHHHHHHHHHhhhhhhhh-hHHHHHHhc
Q 008137 102 GADVLFFIGAIIMAIA---------PQ-----------------------PWVIILGRIFVGLGVGMASM-TAPLYISEA 148 (576)
Q Consensus 102 ~~~~~~~i~~~~~~~~---------~~-----------------------~~~l~~~R~l~G~~~g~~~~-~~~~~i~e~ 148 (576)
+-+..+....+++++. ++ .|...+.-...=+-...... .-.....|.
T Consensus 97 ~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNei 176 (509)
T COG3202 97 IILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEI 176 (509)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887777777777662 01 13333333333332222222 335567888
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch---------hHHHHHHhHHHHHHHHHHHhh
Q 008137 149 SPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGT---------WRWMLGVAGLPAVVQFGLMMM 206 (576)
Q Consensus 149 ~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~---------Wr~~f~v~~~~~~~~~~~~~~ 206 (576)
+..+|-.|..++++.+.+++.+++..+..++....+. -+..+.+.++.+++...+..+
T Consensus 177 tt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~ 243 (509)
T COG3202 177 TTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRY 243 (509)
T ss_pred hhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999888764332 334455555555555555443
No 259
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.91 E-value=0.00014 Score=78.26 Aligned_cols=78 Identities=21% Similarity=0.146 Sum_probs=70.2
Q ss_pred cccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCCHH
Q 008137 473 TAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFE 550 (576)
Q Consensus 473 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 550 (576)
....++.+|....+.|....|+.+...+.+..++|.+.+.+.+..|...+|.+..+..++..+...+++||+..++.+
T Consensus 131 s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 131 SVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred hhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 355678899999999999999999999999999999999999999999999999999999999999999998766554
No 260
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=97.90 E-value=0.00075 Score=71.63 Aligned_cols=143 Identities=15% Similarity=0.112 Sum_probs=79.2
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHh--hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccCchHHHHH---
Q 008137 33 SAGIGGLLFGYDTGVISGALLYIKED--FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWIND-----RFGRKISLLG--- 102 (576)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~d-----r~Grr~~~~~--- 102 (576)
++.+-+++++...+.....+|.+.++ -+.+.++. +. .|.....+.+ -++|.++.| |+||||.-++
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~---~~-fSla~~PfSl-KlLWaPiVDs~y~~~~GRRKSWiiP~Q 78 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQ---AI-FSLASYPFSL-KLLWAPIVDSVYSKRIGRRKSWIIPIQ 78 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccccCCCChhHh---ee-eeeeechhHH-HHhhhhhhhhhcccccCCcchhhhHHH
Confidence 44566788888888776778998888 56776665 32 1221222221 355666666 8999987554
Q ss_pred ---HHHHHHHHHHH----------HHhc-------chH--HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHH
Q 008137 103 ---ADVLFFIGAII----------MAIA-------PQP--WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSA 160 (576)
Q Consensus 103 ---~~~~~~i~~~~----------~~~~-------~~~--~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~ 160 (576)
|+.+..++.-. -... ++. ..+...-++.=+-.+---.+.-.+.-....+++++.|...
T Consensus 79 ~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTc 158 (544)
T PF13000_consen 79 YLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTC 158 (544)
T ss_pred HHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHH
Confidence 33333333222 0000 001 1122222122221221122223333445578889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 008137 161 NGFLITGGQFLAYLINLAFT 180 (576)
Q Consensus 161 ~~~~~~~G~~l~~~l~~~l~ 180 (576)
...+.+.|.+++..+-..+-
T Consensus 159 qtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 159 QTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred HHhHhhhhHHHHHHHHHhhC
Confidence 99999999999888776654
No 261
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=97.82 E-value=0.00011 Score=78.67 Aligned_cols=162 Identities=11% Similarity=-0.007 Sum_probs=110.6
Q ss_pred HHHHh--hcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCC-hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccc
Q 008137 302 TIVQF--AGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGR-RRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIE 378 (576)
Q Consensus 302 ~~~~~--~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (576)
.|+++ .+. +....|+......++.+++++++|+...|.+. |+.++.++++++++.++........
T Consensus 59 pYl~~lD~~A-~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~----------- 126 (488)
T KOG2325|consen 59 PYLQKLDPTA-TATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVP----------- 126 (488)
T ss_pred hhhhhcCCCC-CcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcc-----------
Confidence 34554 333 55667888888999999999999999999886 7888899999999988875443311
Q ss_pred cccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHH
Q 008137 379 SSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVV 458 (576)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 458 (576)
.+ +..+.
T Consensus 127 -----------------------------------------------------------------------~~--~~y~m 133 (488)
T KOG2325|consen 127 -----------------------------------------------------------------------NG--VKYLM 133 (488)
T ss_pred -----------------------------------------------------------------------cc--hHHHH
Confidence 11 23344
Q ss_pred HHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHh------------h-ccchhhHH
Q 008137 459 FLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEA------------L-GSAGTFLL 525 (576)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~------------~-g~~~~~~~ 525 (576)
.++-+..+.+.+.....-.|+++..-.+.|.++++..+....+|.++||.+...+..- + -+..+-++
T Consensus 134 L~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~ 213 (488)
T KOG2325|consen 134 LVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWL 213 (488)
T ss_pred HHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHH
Confidence 4444445555455556667888866677788888888777777777777665443221 0 12346778
Q ss_pred HHHHHHHHHHHHHhhccCCCCCC
Q 008137 526 FAGFSLLGLVAIYLLVPETKGLA 548 (576)
Q Consensus 526 ~~~~~~i~~~~~~~~~~~~~~~~ 548 (576)
++++.++.+++.+++.+|.+...
T Consensus 214 m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 214 MAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred HHHHHHHHHHHHHhheeecccCc
Confidence 88888888888888777765433
No 262
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.79 E-value=0.0015 Score=68.88 Aligned_cols=108 Identities=11% Similarity=0.280 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHhc--c-h------HHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcc---hhhHHHHHHHHHH
Q 008137 98 ISLLGADVLFFIGAIIMAIA--P-Q------PWVIILGRIFVGLGVGMASMTAPLYISEASPAK---IRGALVSANGFLI 165 (576)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~--~-~------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~---~R~~~~~~~~~~~ 165 (576)
++++++.++..+|.++..++ + + .+.++++-++.++|.|+.=|...++.+|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788888888888884443 2 2 367889999999999999999999999999765 4677888999999
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhh
Q 008137 166 TGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMM 206 (576)
Q Consensus 166 ~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~ 206 (576)
++|.++++.+.+++.+..+ |.+.|.+.++..++.++.++.
T Consensus 82 n~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999988877 999999998887777666544
No 263
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=97.72 E-value=0.00088 Score=68.68 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=49.3
Q ss_pred HHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHH
Q 008137 294 NTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVA 359 (576)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~ 359 (576)
+....|.-...+++++ +..+...+.....+.+++...+.|.++||+|||+..+..+++..++++.
T Consensus 51 WLQGpY~Y~LY~~yg~-~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~ 115 (354)
T PF05631_consen 51 WLQGPYLYALYESYGF-SEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT 115 (354)
T ss_pred HhhcchhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 3333333344566677 6667777777778888888999999999999999988888888888764
No 264
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.69 E-value=0.00022 Score=56.95 Aligned_cols=69 Identities=10% Similarity=0.170 Sum_probs=58.9
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 008137 36 IGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLF 107 (576)
Q Consensus 36 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~ 107 (576)
...++.....+.+.|.+|...++.|.+..+. |++.++..+...++++++|+++||+|+++.++....++
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~i---Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQI---GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 4445566667778888888889999999998 99999999999999999999999999988877766554
No 265
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=97.62 E-value=0.014 Score=62.85 Aligned_cols=90 Identities=11% Similarity=-0.023 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHH----hcCCC-c--hhHHHHH
Q 008137 119 QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLA----FTKAP-G--TWRWMLG 191 (576)
Q Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~----l~~~~-~--~Wr~~f~ 191 (576)
.++..++.-++.|++.+........+.+ .+|++. +..+..+.+++++++.++.-. ..+.. . +=...|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 4667777788899998888877777665 566543 344444555555444333222 11210 1 1123344
Q ss_pred HhHHHHHHHHHHHhhccCChhH
Q 008137 192 VAGLPAVVQFGLMMMLPESPRW 213 (576)
Q Consensus 192 v~~~~~~~~~~~~~~l~esp~~ 213 (576)
+..++.++.++++..+++.|..
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~~ 201 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPFA 201 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHHH
Confidence 5555566666666677777643
No 266
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=97.62 E-value=0.0081 Score=66.57 Aligned_cols=155 Identities=14% Similarity=0.212 Sum_probs=120.4
Q ss_pred hHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchHHHHHHHHHHHHHHHHHHhcch------
Q 008137 47 VISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF-GRKISLLGADVLFFIGAIIMAIAPQ------ 119 (576)
Q Consensus 47 ~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~------ 119 (576)
....++.++.++++.+.... .-..+.+.-......+.+++++|-| ||-+++.++.++..++.++..++..
T Consensus 56 ~~~nlv~ylt~~~~~~~~~a---a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p 132 (571)
T KOG1237|consen 56 LVSNLVTYLTLELHASGGGA---ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLP 132 (571)
T ss_pred chhHHHHHHHHHhccchHHH---HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 34667778888888777655 6677777777788889999999986 8999999998888887654443211
Q ss_pred -------------------HHHHHHHHHHHHhhhhhhhhhHHHHHHhccC---cchh---hHHHHHHHHHHHHHHHHHHH
Q 008137 120 -------------------PWVIILGRIFVGLGVGMASMTAPLYISEASP---AKIR---GALVSANGFLITGGQFLAYL 174 (576)
Q Consensus 120 -------------------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~---~~~R---~~~~~~~~~~~~~G~~l~~~ 174 (576)
...+..+.-+..+|.|+.-+...++-+|-++ ++++ ...+.++....++|.+++..
T Consensus 133 ~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t 212 (571)
T KOG1237|consen 133 FMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQT 212 (571)
T ss_pred ccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHH
Confidence 2356677788888999999999999999998 3322 36788899999999999999
Q ss_pred HHHHhcCCCchhHHHHHHhHHHHHHHHHHHh
Q 008137 175 INLAFTKAPGTWRWMLGVAGLPAVVQFGLMM 205 (576)
Q Consensus 175 l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~ 205 (576)
+..+.-+..+ |.+-|.+..+..++.+++++
T Consensus 213 ~~vyiq~~~~-w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 213 VLVYIQDNVG-WKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred HHHhhhhccc-ceeeccHHHHHHHHHHHHHH
Confidence 8888877776 99999998887766655544
No 267
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.42 E-value=0.0027 Score=71.56 Aligned_cols=158 Identities=15% Similarity=0.044 Sum_probs=96.6
Q ss_pred HHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc-cCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccc
Q 008137 302 TIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDK-YGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESS 380 (576)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (576)
.|+....+.+...+..+........-+..+++|+++|+ +||++.+..+.++..++.+++.+...+...+
T Consensus 12 lYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~---------- 81 (654)
T TIGR00926 12 LYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH---------- 81 (654)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc----------
Confidence 33333333355555555555555566778889999996 6999999999888888887766531100000
Q ss_pred cCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHH
Q 008137 381 HFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFL 460 (576)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 460 (576)
+. .....++.+
T Consensus 82 --------------------------------------------------------------------~~-~~~~~l~gL 92 (654)
T TIGR00926 82 --------------------------------------------------------------------PL-HDLLDLLGL 92 (654)
T ss_pred --------------------------------------------------------------------ch-HHHHHHHHH
Confidence 00 001122223
Q ss_pred HHHHHHhcCCcccccchhcccccccc---ccccchhHHHHHHHHHHHHHHHHHHHHHHhh-------ccchhhHHHHHHH
Q 008137 461 GAYIITYSPGMGTAPWIVNSEIYPLR---YRGVGGGIAAVSNWTSNLIVSLTFLTLTEAL-------GSAGTFLLFAGFS 530 (576)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~e~~p~~---~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~-------g~~~~~~~~~~~~ 530 (576)
.+..++.+ ++-|...+...|.++++ .+-....+.....++|+++++.+.+.+.+.. +|...|.+.++++
T Consensus 93 aLia~G~G-giKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m 171 (654)
T TIGR00926 93 ALIALGTG-GIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILM 171 (654)
T ss_pred HHHHhhcc-ccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHH
Confidence 33222222 33345556777777643 3556677778888999999999988887543 4777888888888
Q ss_pred HHHHHHHHh
Q 008137 531 LLGLVAIYL 539 (576)
Q Consensus 531 ~i~~~~~~~ 539 (576)
++++++...
T Consensus 172 ~ia~lvf~~ 180 (654)
T TIGR00926 172 ILALIVFMA 180 (654)
T ss_pred HHHHHHHHH
Confidence 877766544
No 268
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.41 E-value=0.0014 Score=73.15 Aligned_cols=230 Identities=13% Similarity=0.000 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Q 008137 281 GVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVAL 360 (576)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~ 360 (576)
.+.+..+.+......+...+..+=+.+.. +....+++....-+++.+......+..-|..|-+.+-.++++++++.++.
T Consensus 101 ~l~~~~~~q~l~~~y~~s~IttiErRF~i-~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~ 179 (735)
T KOG3626|consen 101 LLSLAAFAQGLYVGYFNSVITTIERRFKI-SSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLF 179 (735)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhcCC-CCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHH
Confidence 33333444443333333333333333444 56668888888888888888888899999999999999999999999998
Q ss_pred HHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccccc
Q 008137 361 AVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEH 440 (576)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (576)
.+............. ..+.....-....++|..... . +.--..+.+..+.++.
T Consensus 180 alPHf~~~~y~~~~~----------------------~~~~~~~~~~~~~s~~~~~~~----~-~~~~~~~~~~~~~~~~ 232 (735)
T KOG3626|consen 180 ALPHFFSGPYEYELE----------------------VIKQSVENPSSSLSFCCCNKS----T-NLCRPSPENSKREKES 232 (735)
T ss_pred hChHHhcCcchhhhh----------------------hhhccccCCccccchhhccCC----c-cccCCCCCcccccccC
Confidence 887654332211110 000000000011112211100 0 1111122222222222
Q ss_pred ccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhh---
Q 008137 441 RTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEAL--- 517 (576)
Q Consensus 441 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~--- 517 (576)
+.++ |..+++.-++.+....-..++..+|+.|....+.-....|+...+..+|=++|-++.+.....+
T Consensus 233 ~~~~---------~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~ 303 (735)
T KOG3626|consen 233 TSYP---------FLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDF 303 (735)
T ss_pred Cchh---------HHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeecc
Confidence 2222 3333333333333444456677889999998888888889988888888777777766654321
Q ss_pred ----------------ccchhhHHHHHHHHHHHHHHHhhccCCCCCC
Q 008137 518 ----------------GSAGTFLLFAGFSLLGLVAIYLLVPETKGLA 548 (576)
Q Consensus 518 ----------------g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 548 (576)
-|+..|++.+.++++..+..++ .|++..++
T Consensus 304 ~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~-fPk~lp~~ 349 (735)
T KOG3626|consen 304 GLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFF-FPKELPKS 349 (735)
T ss_pred ccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh-CcccCccc
Confidence 1444677777777777776544 55544433
No 269
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.24 E-value=0.0023 Score=51.01 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=55.4
Q ss_pred HHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHH
Q 008137 285 QVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFG 352 (576)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~ 352 (576)
..++.+.+...+.-|.|.++++.|. +..+.+.+..+..+..+++.++.|.++||.++++.+.....+
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl-~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGL-SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3445566677888889999998877 788889999999999999999999999999998887655443
No 270
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.18 E-value=7.7e-05 Score=82.24 Aligned_cols=71 Identities=15% Similarity=-0.040 Sum_probs=0.0
Q ss_pred HHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137 296 VMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQA 367 (576)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~ 367 (576)
+...++.+ +.....+..+.+.+....-++.++..++..++.+|..|-+.+..+.++++++.+++.+.....
T Consensus 22 ~~~~ltti-ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~ 92 (539)
T PF03137_consen 22 VNSSLTTI-ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLS 92 (539)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhc
Confidence 33333443 344444778889999999999999999999999998888888899999999999888876543
No 271
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.078 Score=55.60 Aligned_cols=175 Identities=15% Similarity=0.119 Sum_probs=86.6
Q ss_pred HHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH-HHHHHHHHHHh
Q 008137 38 GLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADV-LFFIGAIIMAI 116 (576)
Q Consensus 38 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~-~~~i~~~~~~~ 116 (576)
.+-.......+....+++.+++...+.+............+...+....--++.-|.-+|....+... +..+..+..+.
T Consensus 27 GiG~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i~~l~~~~ 106 (406)
T KOG1479|consen 27 GIGTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFIVTLDLAL 106 (406)
T ss_pred hcccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345566777788888888887665544333444444444444444444555555222221111111 11111222222
Q ss_pred -------cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Q 008137 117 -------APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWM 189 (576)
Q Consensus 117 -------~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~ 189 (576)
...+...++.-.+.|++.|..........++ +|++.-...++-.+.+..+-..+.-+......+...+=-.-
T Consensus 107 v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~y 185 (406)
T KOG1479|consen 107 VKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIY 185 (406)
T ss_pred hccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehh
Confidence 1235666677788888888766666555444 56665444333333332222222222222222222223344
Q ss_pred HHHhHHHHHHHHHHHhhccCChhH
Q 008137 190 LGVAGLPAVVQFGLMMMLPESPRW 213 (576)
Q Consensus 190 f~v~~~~~~~~~~~~~~l~esp~~ 213 (576)
|.+..++.++.++++..+|+.|-.
T Consensus 186 F~~s~~~~llC~i~y~~l~~lpf~ 209 (406)
T KOG1479|consen 186 FITSTVILLLCFVLYLVLPKLPFV 209 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHH
Confidence 555666666666666677777643
No 272
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=96.77 E-value=0.013 Score=63.12 Aligned_cols=67 Identities=27% Similarity=0.314 Sum_probs=53.2
Q ss_pred hhccccc---cccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCC
Q 008137 477 IVNSEIY---PLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPET 544 (576)
Q Consensus 477 ~~~~e~~---p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 544 (576)
++..|.. |.+ ||...+.......+|++++..+.|.+.+..+++..|.+.+.+.++..+..+++.+|.
T Consensus 109 a~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~ 178 (433)
T PF03092_consen 109 ALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEER 178 (433)
T ss_pred HHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhc
Confidence 3444544 333 777788888889999999999999999999999999998888888877776767763
No 273
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.74 E-value=0.039 Score=58.13 Aligned_cols=139 Identities=15% Similarity=0.132 Sum_probs=90.8
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH-----
Q 008137 33 SAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLF----- 107 (576)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~----- 107 (576)
-+.+.++..++..+.+.+.+.. -.++....++. .+...+|.+|-.++.--...+ |+ |+..+.+.+-.
T Consensus 251 PL~lVY~aEY~InqGv~~tl~f-p~~~~~~r~~Y---~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~ 322 (402)
T PF02487_consen 251 PLFLVYFAEYFINQGVAPTLLF-PNSFFSPRDQY---RWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVF 322 (402)
T ss_pred HHHHHHHHHHHHHhchHHHhcC-CccCCCHHHHH---HHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHH
Confidence 3445566666555544443221 12222233333 666667776655553322111 23 44444333322
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137 108 FIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF 179 (576)
Q Consensus 108 ~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l 179 (576)
.+...+.-+.++.|..++.-+..|+..|..++-....+.|-.|+++|-.+++....+-++|..++.+++-.+
T Consensus 323 ~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 323 LLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222223445688999999999999999999999999999999999999999999999999999998887665
No 274
>PRK03612 spermidine synthase; Provisional
Probab=96.66 E-value=0.13 Score=56.70 Aligned_cols=153 Identities=13% Similarity=0.018 Sum_probs=87.4
Q ss_pred hhhhhhhhHHHHHHHHHH-hhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHH-HHHHHH-HHHHHH--
Q 008137 40 LFGYDTGVISGALLYIKE-DFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLG-ADVLFF-IGAIIM-- 114 (576)
Q Consensus 40 ~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~-~~~~~~-i~~~~~-- 114 (576)
+.++..-.+-.++..+.. -+|.+..+. +.+.+++.+|.++|+.+++++.++--|+...+- .+.+.+ ++..+.
T Consensus 25 ~sg~~~L~yEv~~~r~l~~~~G~s~~~~---~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~ 101 (521)
T PRK03612 25 VCAACGLVYELLLGTLASYLLGDSVTQF---STVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYA 101 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHH---HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433 345554454 999999999999999999988744333322111 111111 111111
Q ss_pred --HhcchH-HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchhHHHH
Q 008137 115 --AIAPQP-WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTK-APGTWRWML 190 (576)
Q Consensus 115 --~~~~~~-~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~-~~~~Wr~~f 190 (576)
++.... ..++..-++.|+..|+..|....+..+... ++-+...|-......+|.++|.++.+++.- ..|..+..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~ 180 (521)
T PRK03612 102 AFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAA 180 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 111111 223445567788888888888777665432 224566778888888888888888777544 455455555
Q ss_pred HHhHHH
Q 008137 191 GVAGLP 196 (576)
Q Consensus 191 ~v~~~~ 196 (576)
++..+-
T Consensus 181 ~~a~l~ 186 (521)
T PRK03612 181 LTGSLN 186 (521)
T ss_pred HHHHHH
Confidence 544433
No 275
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=96.52 E-value=0.02 Score=56.11 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=38.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHh---cC-CCchhHHHHHHhHHHHHHHHHHHhhc
Q 008137 152 KIRGALVSANGFLITGGQFLAYLINLAF---TK-APGTWRWMLGVAGLPAVVQFGLMMML 207 (576)
Q Consensus 152 ~~R~~~~~~~~~~~~~G~~l~~~l~~~l---~~-~~~~Wr~~f~v~~~~~~~~~~~~~~l 207 (576)
|+|+........+.++|.++.-..-..- .+ ...+|++++.+.+++.++.++.+..+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777788888888888764432111 00 11259999999999888877776555
No 276
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=96.50 E-value=0.057 Score=49.31 Aligned_cols=109 Identities=13% Similarity=0.014 Sum_probs=73.5
Q ss_pred HHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCC
Q 008137 317 ALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGN 396 (576)
Q Consensus 317 ~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (576)
.-..+.+....+..++.+.+.+++|.|+.++++.+...+-.....+..
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~-------------------------------- 88 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPN-------------------------------- 88 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh--------------------------------
Confidence 344556666778888899999999999999988887765554433321
Q ss_pred CCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccc
Q 008137 397 AKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPW 476 (576)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (576)
.+..+....+.+++.+..+. ..-
T Consensus 89 --------------------------------------------------------~~~l~~~s~l~G~~~a~lW~-aqg 111 (156)
T PF05978_consen 89 --------------------------------------------------------SYTLYPASALLGFGAALLWT-AQG 111 (156)
T ss_pred --------------------------------------------------------HHHHHHHHHHHhhhhHHhhH-hhh
Confidence 13444445555555554433 333
Q ss_pred hhccccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 008137 477 IVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLT 514 (576)
Q Consensus 477 ~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~ 514 (576)
.++.+...++.+++-.|+.-.....+.++|.++.-.+.
T Consensus 112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888898888888888887777776655443
No 277
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.39 E-value=0.041 Score=58.05 Aligned_cols=53 Identities=19% Similarity=0.116 Sum_probs=44.3
Q ss_pred chhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHH
Q 008137 311 SKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVV 363 (576)
Q Consensus 311 ~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~ 363 (576)
+...+.+++.++.+..++..+.+.|+.||.|-|....++..+..++..+=...
T Consensus 77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~is 129 (480)
T KOG2563|consen 77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLIS 129 (480)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc
Confidence 56677788888888899999999999999999999999988888886654433
No 278
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=96.15 E-value=1.8 Score=44.05 Aligned_cols=101 Identities=14% Similarity=0.144 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCc--chh
Q 008137 77 VAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPA--KIR 154 (576)
Q Consensus 77 ~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~--~~R 154 (576)
.+..+..+++.+.+..++|.|.+++++.......- ..-+=+.+..++-.-.+.|+|.+..+..--+|+++.-.. +.|
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~ 146 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQR 146 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhh
Confidence 34445555666688999999999998887665432 222336788899999999999999998877777665432 233
Q ss_pred -------------hHHHHHHHHHHHHHHHHHHHHHHH
Q 008137 155 -------------GALVSANGFLITGGQFLAYLINLA 178 (576)
Q Consensus 155 -------------~~~~~~~~~~~~~G~~l~~~l~~~ 178 (576)
+..+.+++...-+|..++..+-..
T Consensus 147 ~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~~ 183 (390)
T KOG3097|consen 147 GEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMTL 183 (390)
T ss_pred hhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666676666555443
No 279
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=96.12 E-value=0.21 Score=54.10 Aligned_cols=42 Identities=7% Similarity=-0.003 Sum_probs=37.8
Q ss_pred ccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008137 474 APWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE 515 (576)
Q Consensus 474 ~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~ 515 (576)
+.|.+.+|++..++..+-.++....+++|.++++.+...+.+
T Consensus 149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668899999999999999999999999999999988887763
No 280
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.91 Score=48.87 Aligned_cols=141 Identities=15% Similarity=0.146 Sum_probs=92.2
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHhh-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh---ccCchHHHHHHHHHHHHHH
Q 008137 36 IGGLLFGYDTGVISGALLYIKEDF-RDVEKKTWLQELIVSMAVAGAIFGAGFGGWIND---RFGRKISLLGADVLFFIGA 111 (576)
Q Consensus 36 l~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~d---r~Grr~~~~~~~~~~~i~~ 111 (576)
...+..+...+......|.-..-- ..........++..-...+|..++..+.+.+.+ ++||++.+.++..+..++.
T Consensus 247 ~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~ 326 (461)
T KOG3098|consen 247 PFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGF 326 (461)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHH
Confidence 334445556555555555533222 222222222244444444455555555666664 5799999999988888887
Q ss_pred HHHHhc------------------chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHH
Q 008137 112 IIMAIA------------------PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAY 173 (576)
Q Consensus 112 ~~~~~~------------------~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~ 173 (576)
++.-.+ +++...++.-+++|++-+......+.+++..+ +++|..+.++...-..++..++.
T Consensus 327 ~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~ 405 (461)
T KOG3098|consen 327 LLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAF 405 (461)
T ss_pred HHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHh
Confidence 776553 13556777789999999999999999999999 66788888888888777776654
Q ss_pred HHHH
Q 008137 174 LINL 177 (576)
Q Consensus 174 ~l~~ 177 (576)
....
T Consensus 406 f~~~ 409 (461)
T KOG3098|consen 406 FFSP 409 (461)
T ss_pred hhhh
Confidence 4443
No 281
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=95.71 E-value=0.67 Score=49.67 Aligned_cols=149 Identities=13% Similarity=0.194 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 008137 30 LALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFI 109 (576)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i 109 (576)
-++..+++..+-++.--.++..+..+.+.-|.++... |..-+...+....+.+.+.++.+|+|..+.=++++.....
T Consensus 259 ~vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~i---gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~ 335 (432)
T PF06963_consen 259 PVFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVI---GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWV 335 (432)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4555566655556555556666666667778888888 9999999999999999999999999988777776654433
Q ss_pred HHHHHHh------cc----hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137 110 GAIIMAI------AP----QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF 179 (576)
Q Consensus 110 ~~~~~~~------~~----~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l 179 (576)
...++.. ++ +...++.+-.+.=+|.=+.-.+..-++.|..|+++||...|.-....++--++.+.+.-.+
T Consensus 336 ~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 336 CLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3322221 22 2333443444444455456677788899999999999999999999998888888776655
Q ss_pred cC
Q 008137 180 TK 181 (576)
Q Consensus 180 ~~ 181 (576)
.+
T Consensus 416 ~~ 417 (432)
T PF06963_consen 416 PR 417 (432)
T ss_pred CC
Confidence 43
No 282
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=95.48 E-value=0.43 Score=46.79 Aligned_cols=58 Identities=21% Similarity=0.226 Sum_probs=39.3
Q ss_pred HHHhhhHHHHHhhcCCch-hHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHH
Q 008137 295 TVMYYSPTIVQFAGFASK-STALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFG 352 (576)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~ 352 (576)
......+.+..+...... ...+.......+...++.++.|.+.||.|||+.+..+...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 78 (338)
T COG0477 20 LLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLL 78 (338)
T ss_pred hHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHH
Confidence 333445555555544332 3556666777777778889999999999999777766654
No 283
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=94.99 E-value=0.034 Score=58.73 Aligned_cols=87 Identities=21% Similarity=0.208 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc----cCChHHHHH-HHH
Q 008137 277 GLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDK----YGRRRLMIV-SMF 351 (576)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk----~grr~~~~~-~~~ 351 (576)
.++....+.+..++ ++..-..|.+.|++..|...+ ..+..-...-+.+++-.++.|..+|| +||||..+. +..
T Consensus 33 ~li~v~~ia~Gvqf-~wA~elsy~tPyl~~lGvphk-~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 33 KLISVASIAAGVQF-GWALELSYLTPYLQSLGVPHK-WSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHH-HHHHHhccccHHHHHcCCCcc-cccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 34444444444444 456667778888888888444 33333344444567778889999996 688876654 455
Q ss_pred HHHHHHHHHHHHHH
Q 008137 352 GLSSCLVALAVVFF 365 (576)
Q Consensus 352 ~~~~~~~~~~~~~~ 365 (576)
...++++++.+...
T Consensus 111 ~i~~~l~Lig~aaD 124 (498)
T KOG0637|consen 111 LIAVSLFLIGYAAD 124 (498)
T ss_pred HHHHHHhhhhhHhh
Confidence 55666666665543
No 284
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=94.87 E-value=0.38 Score=50.87 Aligned_cols=57 Identities=9% Similarity=0.003 Sum_probs=38.0
Q ss_pred hcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHH
Q 008137 307 AGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVV 363 (576)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~ 363 (576)
.+....+...-+.-+..=..++..+....+.|.++.|++++++.+...+...++.+.
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~ 91 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG 91 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455433333333333333345666777889999999999999888888877776655
No 285
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=94.04 E-value=0.47 Score=38.42 Aligned_cols=71 Identities=17% Similarity=0.072 Sum_probs=58.6
Q ss_pred HHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Q 008137 294 NTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFF 365 (576)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~ 365 (576)
+.++-..|...++.+. +..+++.+....+++.++|++...++.++..+++.+..+.+...+..+.+.+...
T Consensus 9 FayTplLP~M~~~~~l-s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGL-SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred HHHHhHhHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445567777777666 8889999999999999999999999999988888888888888888888777643
No 286
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=92.92 E-value=0.024 Score=58.18 Aligned_cols=37 Identities=14% Similarity=0.043 Sum_probs=1.9
Q ss_pred cccchhccccccccccccchhHHHHHHHHHHHHHHHH
Q 008137 473 TAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLT 509 (576)
Q Consensus 473 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~ 509 (576)
+....+..+..+++.|..+..+...+-.+|-.+|..+
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp HHHH---------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777888888888877777777776666554
No 287
>PRK03612 spermidine synthase; Provisional
Probab=92.84 E-value=3.7 Score=45.38 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=34.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHH-hhccchhhHHHHHHHHHHH
Q 008137 488 RGVGGGIAAVSNWTSNLIVSLTFLTLTE-ALGSAGTFLLFAGFSLLGL 534 (576)
Q Consensus 488 rg~~~g~~~~~~~~g~~~~~~~~~~l~~-~~g~~~~~~~~~~~~~i~~ 534 (576)
.|...|-...++.+|+++|+++.+++.- ..|...+.++.+.+.++..
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4667788888999999999999887754 6776666555555554443
No 288
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=91.63 E-value=2.3 Score=45.82 Aligned_cols=112 Identities=11% Similarity=0.054 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCch--HHHHHH--HHHHHHHHHHHHhc---------chHHHHHHHHHHHHhh
Q 008137 67 WLQELIVSMAVAGAIFGAGFGGWINDRFGRK--ISLLGA--DVLFFIGAIIMAIA---------PQPWVIILGRIFVGLG 133 (576)
Q Consensus 67 ~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr--~~~~~~--~~~~~i~~~~~~~~---------~~~~~l~~~R~l~G~~ 133 (576)
|..-++..++.++-.+|..+..+. .+-++| .+++.+ =+++.-..++|..- ++-+..++..++.|+.
T Consensus 307 ~~~~i~~~~fNvgD~vGR~~~~~~-~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~glt 385 (437)
T TIGR00939 307 FYPIICFLLFNLFDWLGRSLTSKF-MWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFS 385 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhee-EeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHh
Confidence 455677788888888888755442 122333 333322 22344444444332 4667788889999999
Q ss_pred hhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137 134 VGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF 179 (576)
Q Consensus 134 ~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l 179 (576)
.|-....+..+..+..++++|..+-.+...+..+|..+|..++-.+
T Consensus 386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888888888888887765443
No 289
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=91.54 E-value=10 Score=42.25 Aligned_cols=171 Identities=14% Similarity=0.120 Sum_probs=97.0
Q ss_pred HHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhccc-CChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccc
Q 008137 302 TIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKY-GRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESS 380 (576)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (576)
++....+..+...+... ...........+++++++|.+ ||.+.+.++.++..++.+++...........
T Consensus 63 ylt~~~~~~~~~aa~~v-~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p--------- 132 (571)
T KOG1237|consen 63 YLTLELHASGGGAANNV-NAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLP--------- 132 (571)
T ss_pred HHHHHhccchHHHHHHH-HHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---------
Confidence 33344444443333333 334444567778899999965 8888888888888888777666544322110
Q ss_pred cCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhH-HHHH
Q 008137 381 HFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWL-AVVF 459 (576)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~ 459 (576)
-.| ..+.. ...|+....+. .++.
T Consensus 133 ------------------------------------------~~~--~~~~~------------~~~c~~~s~~q~~~~~ 156 (571)
T KOG1237|consen 133 ------------------------------------------FMC--KFKPG------------GNVCESPSKLQLAVLY 156 (571)
T ss_pred ------------------------------------------ccc--cCCCC------------CCcccCcchHHHHHHH
Confidence 000 00000 00122222222 2333
Q ss_pred HHHHHHHhc-CCcccccchhccccccc----cccc--cchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH
Q 008137 460 LGAYIITYS-PGMGTAPWIVNSEIYPL----RYRG--VGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLL 532 (576)
Q Consensus 460 ~~~~~~~~~-~~~~~~~~~~~~e~~p~----~~rg--~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i 532 (576)
..+.....+ .+.-|....+-+|-++. +.+. .-+.......++|..++-.+..++-+..+|...|.+..++..+
T Consensus 157 ~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~l 236 (571)
T KOG1237|consen 157 GALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNAL 236 (571)
T ss_pred HHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHH
Confidence 333333322 23345555677777762 2223 4455556667778888777777777888999888888887777
Q ss_pred HHHHHH
Q 008137 533 GLVAIY 538 (576)
Q Consensus 533 ~~~~~~ 538 (576)
+.++.+
T Consensus 237 ai~iF~ 242 (571)
T KOG1237|consen 237 AILIFL 242 (571)
T ss_pred HHHHHH
Confidence 766654
No 290
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=91.23 E-value=0.44 Score=50.07 Aligned_cols=83 Identities=13% Similarity=-0.057 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCCcccccchhcccccccc---ccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH
Q 008137 456 AVVFLGAYIITYSPGMGTAPWIVNSEIYPLR---YRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLL 532 (576)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i 532 (576)
..+.+.+...+.+ +.=|....+..|.++++ .|...........++|..+++.+.+++.++.||...|.+.++..++
T Consensus 36 ~~~gL~lia~G~G-~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~ 114 (372)
T PF00854_consen 36 FYIGLALIAVGTG-GIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLL 114 (372)
T ss_dssp HHHHHHHHHHHHH-CCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc-cccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHH
Confidence 3444444434333 33455557778888765 3455566678888999999999999999999999999999988888
Q ss_pred HHHHHHh
Q 008137 533 GLVAIYL 539 (576)
Q Consensus 533 ~~~~~~~ 539 (576)
+.+..+.
T Consensus 115 ~~~~f~~ 121 (372)
T PF00854_consen 115 ALIVFLS 121 (372)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 8876654
No 291
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=91.14 E-value=3.5 Score=45.03 Aligned_cols=42 Identities=7% Similarity=-0.076 Sum_probs=37.7
Q ss_pred ccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008137 474 APWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE 515 (576)
Q Consensus 474 ~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~ 515 (576)
..|.+++|+...++..+-.++....+++|.++++.+...+.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999988887777
No 292
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=90.09 E-value=9.5 Score=40.31 Aligned_cols=58 Identities=5% Similarity=-0.158 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhh
Q 008137 278 LYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFV 337 (576)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~ 337 (576)
.+....+........|+.+..-.+++.+...+.+. +..........+.+...+.-.+-
T Consensus 19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n 76 (406)
T KOG1479|consen 19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLN 76 (406)
T ss_pred HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666788888888888777655444 33333333444444444443333
No 293
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=88.75 E-value=18 Score=39.17 Aligned_cols=42 Identities=14% Similarity=0.003 Sum_probs=35.4
Q ss_pred ccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008137 474 APWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE 515 (576)
Q Consensus 474 ~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~ 515 (576)
..|....|+...++..+-.++.+..++++..++..+..++.+
T Consensus 168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788899988999999999999999998888888777665
No 294
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=87.44 E-value=8.9 Score=38.20 Aligned_cols=133 Identities=16% Similarity=0.135 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCch--HHHHHHHHHHHHHHHHHHh----cc---hHHHHHHHHHHHHhhhhhhhhh
Q 008137 70 ELIVSMAVAGAIFGAGFGGWINDRFGRK--ISLLGADVLFFIGAIIMAI----AP---QPWVIILGRIFVGLGVGMASMT 140 (576)
Q Consensus 70 g~i~s~~~~~~~i~~~~~G~l~dr~Grr--~~~~~~~~~~~i~~~~~~~----~~---~~~~l~~~R~l~G~~~g~~~~~ 140 (576)
|.+.+.+++..++|+-+..++..|-..| ..+.+..++.++...+..+ +| ++..=+++-.+.-.+.|..+|.
T Consensus 285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPS 364 (454)
T KOG4332|consen 285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPS 364 (454)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchH
Confidence 8999999999999999999888876554 4445554444443333222 22 2222244555556778889999
Q ss_pred HHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHH
Q 008137 141 APLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGL 203 (576)
Q Consensus 141 ~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~ 203 (576)
...+-+.+.|.++|...+.++..-..+=..++... .-..+..-+-|.+|-++.+...+..+.
T Consensus 365 imkmRsqyIPEearstimNfFRvPLnifvClvLyn-lh~~~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 365 IMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYN-LHVDAFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred HHHHHHhhCCHHHHhhhhhheechhhHhhhhhhee-cccccCccccchhhhhhHHHHHHHHHH
Confidence 99999999999999988887765444322221110 001111124678888887776665444
No 295
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=86.93 E-value=0.46 Score=47.81 Aligned_cols=131 Identities=14% Similarity=0.096 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc--CchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q 008137 70 ELIVSMAVAGAIFGAGFGGWINDRF--GRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISE 147 (576)
Q Consensus 70 g~i~s~~~~~~~i~~~~~G~l~dr~--Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e 147 (576)
|.+.-+-.+...+-.+.+....||+ |.|. .+..++.+.+.++.+++++.++-+.+-.+..++.|....+-..+ +.
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri--~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~l-ss 141 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRI--ALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLAL-SS 141 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHH--HHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhh-hc
Confidence 4455555566666677777788886 4454 44555667778889999999999998888888888665544443 33
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchhHHHHHHhHHHHHHHHHHHhhc
Q 008137 148 ASPAKIRGALVSANGFLITGGQFLAYLINLAFTK-APGTWRWMLGVAGLPAVVQFGLMMML 207 (576)
Q Consensus 148 ~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~-~~~~Wr~~f~v~~~~~~~~~~~~~~l 207 (576)
.+++ ...+.++.+.+..+++|..--..+.+ ..-+-|...++...+.++....++++
T Consensus 142 ~Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 142 RYPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred cCCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence 3332 23455555666666666655555554 21136777777666655555554443
No 296
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=84.76 E-value=0.081 Score=51.64 Aligned_cols=66 Identities=18% Similarity=0.267 Sum_probs=49.3
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHH---------HhhhccCchHHH
Q 008137 32 LSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGG---------WINDRFGRKISL 100 (576)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G---------~l~dr~Grr~~~ 100 (576)
+.-.++.+.+-+..+..-..+-.+.++.+.++... ..++-+..+.-++..++.| +-.||+|||+..
T Consensus 20 f~yGvGHmlNDitAScWFTYlllfltqiglsp~~~---AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~w 94 (412)
T KOG4830|consen 20 FAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSR---AMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSW 94 (412)
T ss_pred eeechhHHHhhHHHHHHHHHHHHHHHHhcCCcchh---HHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeee
Confidence 34467778887777777777777888888888777 6777777777777777765 345799998753
No 297
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=84.58 E-value=4.4 Score=43.80 Aligned_cols=67 Identities=19% Similarity=0.145 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhHHHHhhhHHHHHh--hcCCchhHHHHHH---HHHhHHHHHHHHHHHHhhcccCChHHHHHH
Q 008137 282 VTVQVAQQFVGINTVMYYSPTIVQF--AGFASKSTALALS---LVTSGLNALGSIVSMAFVDKYGRRRLMIVS 349 (576)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~ig~~~~g~l~dk~grr~~~~~~ 349 (576)
+++.++.|....+....-.|++++. .+. +..+.+..+ .++.+=-+-+.++=...++|+||||..++-
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~-sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP 76 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKV-SYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIP 76 (544)
T ss_pred HHHHHHHcCcccccccccchhhhccccCCC-ChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhH
Confidence 3444555666665555567888887 333 333333222 233332222223334456688999987654
No 298
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=81.42 E-value=50 Score=31.42 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=19.6
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137 147 EASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG 184 (576)
Q Consensus 147 e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~ 184 (576)
|+...++|.+.-.......-++.++|..+++.+.+..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~ 190 (209)
T PF06912_consen 153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLG 190 (209)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44434444233344445555566666666666655444
No 299
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=81.42 E-value=15 Score=38.35 Aligned_cols=163 Identities=12% Similarity=-0.018 Sum_probs=79.9
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhcc-chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008137 33 SAGIGGLLFGYDTGVISGALLYIKEDFRD-VEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA 111 (576)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~ 111 (576)
.+.+++++.-...-+.......+...++- +-.-. ..-..+-.....+...+.|...|+..|+|++...+++.=++.
T Consensus 31 ~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lv---Avyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv 107 (503)
T KOG2601|consen 31 FLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLV---AVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSV 107 (503)
T ss_pred hhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhH---HHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHH
Confidence 44556666555444444444444444432 11111 112222233445566778889999999998877666543322
Q ss_pred HH------HHhc------chHHHHHHHHHHHHhhhhh--hhhhHH--HHHHhcc----CcchhhHHH---HHHHHHHHHH
Q 008137 112 II------MAIA------PQPWVIILGRIFVGLGVGM--ASMTAP--LYISEAS----PAKIRGALV---SANGFLITGG 168 (576)
Q Consensus 112 ~~------~~~~------~~~~~l~~~R~l~G~~~g~--~~~~~~--~~i~e~~----~~~~R~~~~---~~~~~~~~~G 168 (576)
++ .-+. .++..+..+-.+.-...+. ....+. ..-.||. ..+.+.... +.....-..-
T Consensus 108 ~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~t 187 (503)
T KOG2601|consen 108 IVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQST 187 (503)
T ss_pred HHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhh
Confidence 22 2222 2445554444333322111 111111 1123332 234444444 3333333345
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHhHHHHHH
Q 008137 169 QFLAYLINLAFTKAPGTWRWMLGVAGLPAVV 199 (576)
Q Consensus 169 ~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~ 199 (576)
..++|.+.|.+..+.+ -|..-...++-+++
T Consensus 188 n~Lapv~tg~Iitfvs-l~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 188 NLLAPVITGLIITFVS-LRASAGTFAAWALV 217 (503)
T ss_pred hchhhhhhcccceeec-hhhhhhhhHHHHHH
Confidence 6789999998887766 66655555544444
No 300
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=80.75 E-value=19 Score=37.37 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=76.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCch--HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhh
Q 008137 62 VEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRK--ISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASM 139 (576)
Q Consensus 62 ~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr--~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~ 139 (576)
++......|..-++..+..+++.+..|.+.-.+.|. ..+.++.+..+...++++-+++.|...++-.+-+.-.....+
T Consensus 266 ~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~it 345 (433)
T KOG3810|consen 266 PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTIT 345 (433)
T ss_pred CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhh
Confidence 333334447888888999999999999999888775 444455555555566777788888887777777776777788
Q ss_pred hHHHHHHhccCcchhhHHHHHHHHH
Q 008137 140 TAPLYISEASPAKIRGALVSANGFL 164 (576)
Q Consensus 140 ~~~~~i~e~~~~~~R~~~~~~~~~~ 164 (576)
.+..-+++....+.-|..+|++.+.
T Consensus 346 iA~~~iA~nL~~e~~gLvFGiNTFv 370 (433)
T KOG3810|consen 346 IATFQIARNLSSELFGLVFGINTFV 370 (433)
T ss_pred HHHHHHHHhhhhhhheeeeehHHHH
Confidence 8888888888777778888877654
No 301
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=79.28 E-value=8.4 Score=39.13 Aligned_cols=141 Identities=17% Similarity=0.172 Sum_probs=91.4
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-hHH-----HHHHH
Q 008137 32 LSAGIGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGR-KIS-----LLGAD 104 (576)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Gr-r~~-----~~~~~ 104 (576)
+-+++.++..++-++.+...+-. -.+.+..+.+.+ .-|....+.+|-.++. =+-++=| +.. +-+-.
T Consensus 254 vPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sq--YRwyqvlYQlGVFiSR-----SS~~~~~~p~l~~LailQ~vN 326 (409)
T KOG3880|consen 254 VPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQ--YRWYQVLYQLGVFISR-----SSINLFTMPYLWLLAILQFVN 326 (409)
T ss_pred HHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhc--chhhheeeeeeEEEEe-----ccceEEechHHHHHHHHHHHH
Confidence 33455555555554444332210 123344433332 2677777766644322 1222212 221 22334
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137 105 VLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF 179 (576)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l 179 (576)
+++.+...+..+.++++..++.-+..|+-.|..++-..--+.+-.++++|-.+++....+-++|..++.+++-.+
T Consensus 327 l~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 327 LLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 455666667778899999999999999988988988888888888999999999999999999999888877554
No 302
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=77.42 E-value=49 Score=32.86 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-cCchHHHH----HHHHHHHHHHHHHHh-cc----hHHHHHHHHHHHHhhhhhhhh
Q 008137 70 ELIVSMAVAGAIFGAGFGGWINDR-FGRKISLL----GADVLFFIGAIIMAI-AP----QPWVIILGRIFVGLGVGMASM 139 (576)
Q Consensus 70 g~i~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~----~~~~~~~i~~~~~~~-~~----~~~~l~~~R~l~G~~~g~~~~ 139 (576)
....-++..|..+|....|.++.. +-||+.+. .+.+++.++.+.... .. ++..++++-|+.|++.=+..+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 555666777777888888888775 45555433 345555555554322 21 466788888888886644444
Q ss_pred hH
Q 008137 140 TA 141 (576)
Q Consensus 140 ~~ 141 (576)
+.
T Consensus 224 Vi 225 (267)
T PF07672_consen 224 VI 225 (267)
T ss_pred HH
Confidence 43
No 303
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=70.90 E-value=1.6 Score=44.65 Aligned_cols=107 Identities=15% Similarity=0.207 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc--CchHHHHHHH--HHHHHHHHHHH----------hcchHHHHHHHHHHHHhhhhh
Q 008137 71 LIVSMAVAGAIFGAGFGGWINDRF--GRKISLLGAD--VLFFIGAIIMA----------IAPQPWVIILGRIFVGLGVGM 136 (576)
Q Consensus 71 ~i~s~~~~~~~i~~~~~G~l~dr~--Grr~~~~~~~--~~~~i~~~~~~----------~~~~~~~l~~~R~l~G~~~g~ 136 (576)
....++.++-.+|..+.++.- +- .+|+....+. +++.-..++|. +-+|-+..++.-++.|+..|-
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~-~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy 264 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPR-WPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeE-ecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence 466678888888888777632 11 3444443322 22222222331 234567788889999999999
Q ss_pred hhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008137 137 ASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLA 178 (576)
Q Consensus 137 ~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~ 178 (576)
....+..+..+..++++|..+-.+......+|..+|..++-.
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp --HHHH------------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888888888887777766543
No 304
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.67 E-value=13 Score=31.18 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc-CchHHHHHHHHHH
Q 008137 70 ELIVSMAVAGAIFGAGFGGWINDRF-GRKISLLGADVLF 107 (576)
Q Consensus 70 g~i~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~ 107 (576)
..-.+.-+++..+.....||+.||| |.++..+|..++.
T Consensus 45 a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lll 83 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLL 83 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 5555666777777778899999997 6665555444433
No 305
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=70.51 E-value=1.4e+02 Score=31.12 Aligned_cols=94 Identities=16% Similarity=0.063 Sum_probs=61.5
Q ss_pred HHHHHHHhhc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHH----HHHH-HHHHHHHHHhc----chH
Q 008137 51 ALLYIKEDFR-DVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLG----ADVL-FFIGAIIMAIA----PQP 120 (576)
Q Consensus 51 ~~~~i~~~~~-~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~----~~~~-~~i~~~~~~~~----~~~ 120 (576)
.+..++..+. ..--+. +++.+.+.....+|+...-++.|.--.-+.+.. |++. .+...+-..|+ ++-
T Consensus 29 al~tLatyLlG~~Ilq~---S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~ 105 (508)
T COG4262 29 ALGTLATYLLGGGILQT---SLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSR 105 (508)
T ss_pred HHHHHHHHhcCCceeeh---HHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHH
Confidence 3444555543 333344 899999999999999999888885433322222 2221 22222222333 467
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHh
Q 008137 121 WVIILGRIFVGLGVGMASMTAPLYISE 147 (576)
Q Consensus 121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e 147 (576)
+.+.++-++.|.-.|+..|....++..
T Consensus 106 ~Vly~lt~vIG~LVG~EiPL~mrml~~ 132 (508)
T COG4262 106 LVLYALTAVIGVLVGAEIPLLMRMLQR 132 (508)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 788899999999999999999998876
No 306
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=70.26 E-value=63 Score=34.13 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHH---HHHHHhHHHHHHHHHHHHhhc-----ccCChHHHHHH
Q 008137 281 GVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALA---LSLVTSGLNALGSIVSMAFVD-----KYGRRRLMIVS 349 (576)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ig~~~~g~l~d-----k~grr~~~~~~ 349 (576)
........|........ .+|.+++..+. +-...+. ....+.+ -++..+++| |+||||..++-
T Consensus 35 lLl~LYllQGiP~GL~~-~iP~lL~ak~v-Syt~~a~fS~ay~P~sL-----KllWaPiVDs~y~k~~GrrksWvvp 104 (510)
T KOG3574|consen 35 LLLFLYLLQGIPLGLIG-AIPLLLQAKGV-SYTSQAIFSFAYWPFSL-----KLLWAPIVDSVYSKRFGRRKSWVVP 104 (510)
T ss_pred HHHHHHHHcCCchhHhh-hhHHHhcCCCc-chhhhhhhhhhhhHHHH-----HHHHHhhhHHHHHHhhccccceeee
Confidence 34444555666666655 78999985444 2222222 2223222 345566666 99999876543
No 307
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=54.84 E-value=1.6e+02 Score=31.20 Aligned_cols=45 Identities=11% Similarity=0.114 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Q 008137 492 GGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVA 536 (576)
Q Consensus 492 ~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~ 536 (576)
.+.....-.....+.|.+.|.+.+..+.+....++++.+++....
T Consensus 177 natir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~vsm~~ 221 (503)
T KOG2601|consen 177 NATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALVSMWV 221 (503)
T ss_pred chhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHHHHHH
Confidence 344445566678899999999998888887777777777775443
No 308
>COG3619 Predicted membrane protein [Function unknown]
Probab=53.61 E-value=2.2e+02 Score=27.66 Aligned_cols=169 Identities=14% Similarity=0.079 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH------hhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-hHH
Q 008137 27 IMKLALSAGIGGLLFGYDTGVISGALLYIKE------DFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGR-KIS 99 (576)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~------~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Gr-r~~ 99 (576)
.+..+.+...+.+++.+.....+......+. ..++... .+..........+...+|......+..|..| ...
T Consensus 10 l~l~~lLa~~aGfvDa~~f~~~gg~F~s~~TGN~v~~gi~l~~~-~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~~~~~ 88 (226)
T COG3619 10 LRLGLLLALVAGFVDAFGFLHLGGVFVSFMTGNLVLLGIELAEG-DAALAVLLLLPILAFVLGVAAAELISRRATRSFIP 88 (226)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCchhhheeccHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 3445556666777777766443333322211 1111111 1222666777777777775555555555554 222
Q ss_pred H--HHHHHHHHHHHHHHHhc----chHHHHHHHHHHHH-----------hhhhhhhhhH-----HHHHHhccCcchh-hH
Q 008137 100 L--LGADVLFFIGAIIMAIA----PQPWVIILGRIFVG-----------LGVGMASMTA-----PLYISEASPAKIR-GA 156 (576)
Q Consensus 100 ~--~~~~~~~~i~~~~~~~~----~~~~~l~~~R~l~G-----------~~~g~~~~~~-----~~~i~e~~~~~~R-~~ 156 (576)
. ..+.++..+.....++. ++....+..-|.+| .+.+-.+.+. ..-+.+++..|+. -.
T Consensus 89 ~l~~~~~ll~~~v~~~~~~~p~~~~~~~~~il~~f~mg~Qnasf~k~~g~~~~~t~~TGnl~~~~~~l~~~l~~k~~~~~ 168 (226)
T COG3619 89 VLLLVSLLLALIALLALGFIPESSPDFVAVILVAFAMGIQNASFRKVGGAPYGTTYVTGNLKSAGRGLGRYLSGKDKEKL 168 (226)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCccccchhhhhhHHHHHHHHHHHHhccchHHH
Confidence 2 22222223333333332 34444444444444 3333222222 2234555544322 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHH
Q 008137 157 LVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAV 198 (576)
Q Consensus 157 ~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~ 198 (576)
.-...+...-++.++|...++++....+ .+..|+..++.+
T Consensus 169 ~~~~~~~~~il~f~~GAi~g~ll~~~~g--~~al~~~~~~i~ 208 (226)
T COG3619 169 RDWLIYLSLILSFIVGAICGALLTLFFG--LKALWVVAALIL 208 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHH
Confidence 2334445555666777777777665444 233444444333
No 309
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=51.12 E-value=2.8e+02 Score=28.14 Aligned_cols=78 Identities=15% Similarity=0.191 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc---cCchHHHH
Q 008137 25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR---FGRKISLL 101 (576)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr---~Grr~~~~ 101 (576)
.++.+..+.+..++++.-+..+..+..+..+++.++...+.. +++.+.. ...+..+-.++ ||.||.=+
T Consensus 21 ~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~---al~lal~------A~~~a~r~~~~~~TfGy~R~ei 91 (296)
T COG1230 21 ERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDAL---ALLLALI------AIKLARRPATKRFTFGYKRLEI 91 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHH---HHHHHHH------HHHHhcCCCCCCCCccHhHHHH
Confidence 344455555566666666666667777777888887665555 4433322 22333334443 67776655
Q ss_pred HHHHHHHHHH
Q 008137 102 GADVLFFIGA 111 (576)
Q Consensus 102 ~~~~~~~i~~ 111 (576)
++..+.++.-
T Consensus 92 Laa~~nav~L 101 (296)
T COG1230 92 LAAFLNALLL 101 (296)
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 310
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=48.64 E-value=1.5e+02 Score=29.30 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=15.8
Q ss_pred HHHHHhhcccCChHHHHHHHHHHHH
Q 008137 331 IVSMAFVDKYGRRRLMIVSMFGLSS 355 (576)
Q Consensus 331 ~~~g~l~dk~grr~~~~~~~~~~~~ 355 (576)
+.+-+++.|+..|++.+.+.++..+
T Consensus 258 igGk~lAskIS~rtVt~~ggi~Fi~ 282 (294)
T KOG2881|consen 258 IGGKYLASKISVRTVTLIGGILFII 282 (294)
T ss_pred hhhHHHhhhheeEEEEEecchhHHH
Confidence 3344577888888877666554433
No 311
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=43.83 E-value=1.6e+02 Score=33.90 Aligned_cols=43 Identities=21% Similarity=0.430 Sum_probs=31.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhhhhhh
Q 008137 95 GRKISLLGADVLFFIGAIIMAIA-PQPWVIILGRIFVGLGVGMA 137 (576)
Q Consensus 95 Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~R~l~G~~~g~~ 137 (576)
||.+-++++.++++++++...+. +..+.+...-++.+++.++.
T Consensus 55 ~R~~~l~it~~~f~i~sl~v~ll~~~p~~~~~~l~~~tf~~~ml 98 (701)
T TIGR01667 55 GRLKNLIITLSCFSIASFLVQLLFPKPWLFPFLLTLLTFGFILL 98 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 66788899999999999888765 45566666666666665543
No 312
>COG1079 Uncharacterized ABC-type transport system, permease component [General function prediction only]
Probab=40.29 E-value=4.2e+02 Score=27.02 Aligned_cols=96 Identities=19% Similarity=0.098 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH-HHHh-cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHH
Q 008137 80 AIFGAGFGGWINDRFGRKISLLGADVLFFIGAI-IMAI-APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGAL 157 (576)
Q Consensus 80 ~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~-~~~~-~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~ 157 (576)
-.+..-+++.+++|-|.-..-+=|..+++..+. +.+. ..++|.=++.-.+.|. .......+++.....++--..
T Consensus 20 PLllaaLG~l~sERsGVlNIglEG~M~~gAf~~~~~~~~t~spw~gl~~a~l~g~----l~~ll~a~~ti~l~~nqiisG 95 (304)
T COG1079 20 PLLLAALGGLFSERSGVLNIGLEGIMLLGAFSGALFAYGTGSPWLGLLAAALVGA----LFGLLHAFLTIKLRANQIISG 95 (304)
T ss_pred HHHHHHHHHHHHHHhceeeechhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH----HHHHHHHHHHHhhccccchhH
Confidence 344556778888998875544433333332222 1122 4456655544444444 445556666777766776667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 008137 158 VSANGFLITGGQFLAYLINLAF 179 (576)
Q Consensus 158 ~~~~~~~~~~G~~l~~~l~~~l 179 (576)
.+++-.+.++..+++..+.+.-
T Consensus 96 ~alnl~a~Glt~fl~~~~~~~~ 117 (304)
T COG1079 96 LALNLLASGLTAFLGQSIFGQP 117 (304)
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 7777777777777777666554
No 313
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=35.41 E-value=85 Score=28.44 Aligned_cols=36 Identities=11% Similarity=0.006 Sum_probs=24.7
Q ss_pred CcccccchhccccccccccccchhHHHHHHHHHHHH
Q 008137 470 GMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLI 505 (576)
Q Consensus 470 ~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~ 505 (576)
+...+.|.+.+-.-.++..|...|+-.+-.+++.+.
T Consensus 110 gllGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 110 GLLGISYGILSASWDPEREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred HHHhhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence 333455556666667777899999988877776543
No 314
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=34.61 E-value=1.9e+02 Score=21.42 Aligned_cols=46 Identities=9% Similarity=0.126 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhhccCC
Q 008137 164 LITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPES 210 (576)
Q Consensus 164 ~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~es 210 (576)
+.-+|.+++++.+......++ .+....+..+.+++...+...+|++
T Consensus 10 s~il~~vvgyI~ssL~~~~~n-~~~~~Ii~vi~~i~~~~~~~~i~~~ 55 (57)
T PF11151_consen 10 SFILGEVVGYIGSSLTGVTYN-FTTAAIIAVIFGIIVANIIAVIPKK 55 (57)
T ss_pred HHHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 445678888887777666555 8888777777777777666666654
No 315
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=32.15 E-value=4e+02 Score=30.73 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=34.0
Q ss_pred HHhhhc----cCchHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhhhhhh
Q 008137 88 GWINDR----FGRKISLLGADVLFFIGAIIMAIA-PQPWVIILGRIFVGLGVGMA 137 (576)
Q Consensus 88 G~l~dr----~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~R~l~G~~~g~~ 137 (576)
+-++|. -||.+-++++.++++++++...+. +..|.+..+-++.+++.++.
T Consensus 44 ~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~~~l~~~tf~~~ml 98 (704)
T TIGR01666 44 AALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGKPWLFAVGLTVSTFGFIML 98 (704)
T ss_pred hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 445663 366777888999999888887765 55666666666666655543
No 316
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=31.57 E-value=1.5e+02 Score=26.88 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=46.0
Q ss_pred hhhccCchHHHHHHHHHH------HHHHHHHHh----cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHH
Q 008137 90 INDRFGRKISLLGADVLF------FIGAIIMAI----APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVS 159 (576)
Q Consensus 90 l~dr~Grr~~~~~~~~~~------~i~~~~~~~----~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~ 159 (576)
.+||.-||..+..|+=.. .+...+..- .+.+..+++.-.+.|+|. ..+.+.+++--.++++.|..+|
T Consensus 57 Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gl---lGisYGilSaSWD~~r~GSllG 133 (153)
T PF11947_consen 57 VSNRMLRRMAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGL---LGISYGILSASWDPEREGSLLG 133 (153)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHH---HhhhhhhcccccCCCCCCCccc
Confidence 467776666655443322 222222111 245556666655555553 3355666777777777898889
Q ss_pred HHHHHHHHHHHH
Q 008137 160 ANGFLITGGQFL 171 (576)
Q Consensus 160 ~~~~~~~~G~~l 171 (576)
+-.+-.+++-+.
T Consensus 134 ~~e~~~N~~r~~ 145 (153)
T PF11947_consen 134 WEEFKRNWGRMW 145 (153)
T ss_pred HHHHHHhHHHHH
Confidence 888887776553
No 317
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.35 E-value=2e+02 Score=24.38 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=35.8
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Q 008137 484 PLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAI 537 (576)
Q Consensus 484 p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 537 (576)
.++.++.+.++-...-.+++++.....|++.+++--..+ |.+.++.++++.+.
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsP-wglIv~lllGf~AG 88 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSP-WGLIVFLLLGFGAG 88 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHH
Confidence 346678888888888899999999999999998632222 33334444444443
No 318
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=31.05 E-value=2.4e+02 Score=29.38 Aligned_cols=174 Identities=10% Similarity=-0.010 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHhhcccC------ChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccc
Q 008137 320 LVTSGLNALGSIVSMAFVDKYG------RRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYIT 393 (576)
Q Consensus 320 ~~~~~~~~ig~~~~g~l~dk~g------rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (576)
.+..+..++.....|++..|.+ +|.+-.+.+-+...+++................
T Consensus 2 v~~~i~~i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~------------------- 62 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSL------------------- 62 (385)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhh-------------------
Q ss_pred cCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCccc
Q 008137 394 DGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGT 473 (576)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 473 (576)
....+........++.
T Consensus 63 -----------------------------------------------------------~~~~~~~~~~~~~~~~----- 78 (385)
T PF03547_consen 63 -----------------------------------------------------------WFIPVFAFIIFILGLL----- 78 (385)
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHHHHH-----
Q ss_pred ccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCCHHHHH
Q 008137 474 APWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVE 553 (576)
Q Consensus 474 ~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 553 (576)
+.+.+..-.-.++.+......+....+.+.+..|++....-+..-.+..++......+...+...++-++..+.+.++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~ 158 (385)
T PF03547_consen 79 LGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEE 158 (385)
T ss_pred HHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhccccccccccccc
Q ss_pred HHHhCCCCccccccccccccCCC
Q 008137 554 KMLETGFKPSAFMKKSNKSEMHA 576 (576)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~ 576 (576)
.....+...++.++.+.+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~ 181 (385)
T PF03547_consen 159 PSSAESIDSEQEDSDEMSLDGSS 181 (385)
T ss_pred ccccccccccccCCccccCCccc
No 319
>COG1288 Predicted membrane protein [Function unknown]
Probab=30.72 E-value=7.1e+02 Score=26.84 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=51.0
Q ss_pred CchH-HHHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHH
Q 008137 95 GRKI-SLLGADVLFFIGAIIMAIAPQPWVIILG--RIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFL 171 (576)
Q Consensus 95 Grr~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~--R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l 171 (576)
||.. .+.+-..+++++...++....-..++-. =.+.-+|.-.....+..+++. +-|.+.+..+ ..+..+
T Consensus 132 G~e~llI~~l~ilFslgGt~~Gm~EEaiaFypIliPv~ialGyDsi~~va~i~lgt-----~iG~~~St~N---PF~~~I 203 (481)
T COG1288 132 GKEFLLIPVLFILFSLGGTVFGMGEEAIAFYPILIPLMVALGYDSITGVAIIYIGT-----QIGFAASTMN---PFATVI 203 (481)
T ss_pred CCeEEEeeHHHHHHHhccccccchHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHh-----ccchhhhhcC---chHHHH
Confidence 4433 3334555677777777665532222211 122222222233333333322 2333333322 223344
Q ss_pred HHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHh--hccCChh
Q 008137 172 AYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMM--MLPESPR 212 (576)
Q Consensus 172 ~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~--~l~esp~ 212 (576)
+.-+++.=....-+||...|+...+..+..+.++ .++++|.
T Consensus 204 Aq~iAGip~~sG~~~Riv~~v~~~~~~i~y~~~Ya~KvkkdP~ 246 (481)
T COG1288 204 AQNIAGIPFLSGMGLRIVVWVVFTLISIIYVYWYASKVKKDPT 246 (481)
T ss_pred HhhhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4444443222222599999998877666555543 3555554
No 320
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=30.03 E-value=14 Score=36.57 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=0.0
Q ss_pred HHHHhhccCCCC
Q 008137 535 VAIYLLVPETKG 546 (576)
Q Consensus 535 ~~~~~~~~~~~~ 546 (576)
+++|+++.+++.
T Consensus 179 iLIWlY~H~~~~ 190 (381)
T PF05297_consen 179 ILIWLYVHDQRH 190 (381)
T ss_dssp ------------
T ss_pred HHHHHHhcCCCC
Confidence 344666777764
No 321
>PRK10263 DNA translocase FtsK; Provisional
Probab=29.14 E-value=2.9e+02 Score=33.96 Aligned_cols=18 Identities=11% Similarity=0.205 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhcCCCc
Q 008137 167 GGQFLAYLINLAFTKAPG 184 (576)
Q Consensus 167 ~G~~l~~~l~~~l~~~~~ 184 (576)
.|+++|.++..++....|
T Consensus 142 gGGIIG~lLs~lL~~LfG 159 (1355)
T PRK10263 142 SGGVIGSLLSTTLQPLLH 159 (1355)
T ss_pred ccchHHHHHHHHHHHHHh
Confidence 355666666555544433
No 322
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=28.95 E-value=7e+02 Score=27.56 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=11.1
Q ss_pred HHhHHHHHHHHHHHHhhcccCC
Q 008137 321 VTSGLNALGSIVSMAFVDKYGR 342 (576)
Q Consensus 321 ~~~~~~~ig~~~~g~l~dk~gr 342 (576)
...+.+.++..+++.+-..++.
T Consensus 305 ~y~~~~~iaGy~S~~~yk~~~g 326 (521)
T PF02990_consen 305 LYALTSFIAGYVSARLYKSFGG 326 (521)
T ss_pred HHHHHhhHHHHHHHHHHHHcCC
Confidence 3444445555555555555543
No 323
>PLN02332 membrane bound O-acyl transferase (MBOAT) family protein
Probab=28.43 E-value=3.4e+02 Score=29.56 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=23.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcchHHHHHH
Q 008137 95 GRKISLLGADVLFFIGAIIMAIAPQPWVIIL 125 (576)
Q Consensus 95 Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 125 (576)
|.|+.+.-..+.+.++++.+++.+++....+
T Consensus 339 ~~~~~~~~~~~t~~~sa~WHG~~~gYyl~fl 369 (465)
T PLN02332 339 GKKPGFFQLLATQTVSAVWHGLYPGYILFFV 369 (465)
T ss_pred CcchhHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 4455566667788899999999998877653
No 324
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=26.40 E-value=5.6e+02 Score=24.25 Aligned_cols=22 Identities=23% Similarity=0.040 Sum_probs=13.4
Q ss_pred hHHHHHHhHHHHHHHHHHHhhc
Q 008137 186 WRWMLGVAGLPAVVQFGLMMML 207 (576)
Q Consensus 186 Wr~~f~v~~~~~~~~~~~~~~l 207 (576)
-+...++..+++++.++..+++
T Consensus 176 p~l~~~~~iiig~i~~~~~~~l 197 (206)
T PF06570_consen 176 PVLPPWVYIIIGVIAFALRFYL 197 (206)
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666665554
No 325
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=26.11 E-value=2.8e+02 Score=24.95 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchH
Q 008137 73 VSMAVAGAIFGAGFGGWINDRFGRKI 98 (576)
Q Consensus 73 ~s~~~~~~~i~~~~~G~l~dr~Grr~ 98 (576)
+.-|.+|+.+.+.+.|++.+|..+++
T Consensus 59 TgGyl~gf~~~a~i~g~~~~~~~~~~ 84 (148)
T PF02632_consen 59 TGGYLLGFPLAALIIGLLAERLKRSR 84 (148)
T ss_pred CChHHHHHHHHHHHHHHHHHhccccc
Confidence 34578889999999999999998864
No 326
>COG4769 Predicted membrane protein [Function unknown]
Probab=25.31 E-value=1.6e+02 Score=27.01 Aligned_cols=52 Identities=13% Similarity=-0.023 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhh
Q 008137 76 AVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLG 133 (576)
Q Consensus 76 ~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~ 133 (576)
+.+..++.+.+.-++..++|.|++-.+|+-. .-+|.+|..++++.+++.|-.
T Consensus 82 ~sfaG~i~S~L~m~~l~~f~~k~~S~lgiS~------mGaF~hNl~QLivas~Lv~~~ 133 (181)
T COG4769 82 YSFAGAILSTLFMYFLYQFGPKYLSLLGISV------MGAFTHNLGQLIVASFLVFTT 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEeeeehhh------HHHHHHhHHHHHHHHHHHhcc
Confidence 4444555566667788899988876666533 346778999999999988753
No 327
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.27 E-value=3.2e+02 Score=22.85 Aligned_cols=29 Identities=10% Similarity=-0.102 Sum_probs=16.2
Q ss_pred HHHHHHHHhhh-ccCchHHHHHHHHHHHHH
Q 008137 82 FGAGFGGWIND-RFGRKISLLGADVLFFIG 110 (576)
Q Consensus 82 i~~~~~G~l~d-r~Grr~~~~~~~~~~~i~ 110 (576)
+...+.|++.| +||.++.+.+..++.+++
T Consensus 57 l~G~~lG~WLD~~~~t~~~~tl~~lllGv~ 86 (100)
T TIGR02230 57 LLGVAVGIWLDRHYPSPFSWTLTMLIVGVV 86 (100)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 34455566666 477766555555544443
No 328
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=24.09 E-value=9.3e+02 Score=26.01 Aligned_cols=51 Identities=12% Similarity=-0.018 Sum_probs=26.4
Q ss_pred HhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHH
Q 008137 146 SEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLP 196 (576)
Q Consensus 146 ~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~ 196 (576)
.|..|.++|--...+.....+.-..++....|.+....-++++..+...+-
T Consensus 11 ~~~vp~~~r~~~~~~~~vWfga~~~ias~~~G~ll~~~L~~~~si~aillG 61 (442)
T COG1457 11 IEPVPEESRKGWLNLFLVWFGANFTIASMVTGGLLVPGLSFGQSLLAILLG 61 (442)
T ss_pred CCCCChhhhhcchhHHHHHHHhHhHHHHHHHhccccccccHHHHHHHHHHH
Confidence 456778888433355444444444455554444443322366665554443
No 329
>PRK10263 DNA translocase FtsK; Provisional
Probab=23.90 E-value=4.7e+02 Score=32.31 Aligned_cols=21 Identities=10% Similarity=0.015 Sum_probs=12.9
Q ss_pred HhHHHHHHHHHHHHhhcccCC
Q 008137 322 TSGLNALGSIVSMAFVDKYGR 342 (576)
Q Consensus 322 ~~~~~~ig~~~~g~l~dk~gr 342 (576)
...++.+|.++...+..-+|.
T Consensus 61 ~Nl~GiVGA~LAD~L~~LFGl 81 (1355)
T PRK10263 61 HNLGGMPGAWLADTLFFIFGV 81 (1355)
T ss_pred ccccchHHHHHHHHHHHHHhH
Confidence 345566777777666665563
No 330
>PRK11588 hypothetical protein; Provisional
Probab=23.70 E-value=1e+03 Score=26.26 Aligned_cols=49 Identities=8% Similarity=0.039 Sum_probs=28.4
Q ss_pred HHHhhhccCch--HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhh
Q 008137 87 GGWINDRFGRK--ISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVG 135 (576)
Q Consensus 87 ~G~l~dr~Grr--~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g 135 (576)
.+++..|++.| ..+.+..++++++....+++.....|+-.-.....+.|
T Consensus 136 i~~l~~k~~~~~~llIpil~~lFsl~G~~~G~~Ee~i~f~pi~v~l~~alG 186 (506)
T PRK11588 136 ILALIRKTRGNEILFIPVLFILFSLGGAVFGMGEEAIAFAIIIAPLMVRLG 186 (506)
T ss_pred HHHHHHHhCCCcEEeHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC
Confidence 47788888766 34445555677777677776655444443333333333
No 331
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.17 E-value=4.2e+02 Score=22.17 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=12.2
Q ss_pred HHHHHHHHhhcccCChHHHHHHHHHHHH
Q 008137 328 LGSIVSMAFVDKYGRRRLMIVSMFGLSS 355 (576)
Q Consensus 328 ig~~~~g~l~dk~grr~~~~~~~~~~~~ 355 (576)
+|..++-|+=++++-.+...+.+++..+
T Consensus 58 ~G~~lG~WLD~~~~t~~~~tl~~lllGv 85 (100)
T TIGR02230 58 LGVAVGIWLDRHYPSPFSWTLTMLIVGV 85 (100)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 3344444444455554444443333333
No 332
>PRK15097 cytochrome d terminal oxidase subunit 1; Provisional
Probab=22.72 E-value=4.9e+02 Score=28.68 Aligned_cols=66 Identities=20% Similarity=0.314 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 008137 48 ISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAI 116 (576)
Q Consensus 48 ~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 116 (576)
++..++.+.+..|+.-....-..-+.+.+.=...+|-.++|| ||+++|.- +++..+.++|+.+.++
T Consensus 77 FG~nWs~ys~~vGdifG~pLa~E~l~AFFlEstFlGl~~FGW--~rl~~~~H-~~~~~lVaiGt~lSA~ 142 (522)
T PRK15097 77 FGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGW--DRLGKVQH-MCVTWLVALGSNLSAL 142 (522)
T ss_pred cccccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh--hhcchHHH-HHHHHHHHHHHHHHHH
Confidence 444455555554433222222244556666677888889998 99985544 4455555566655544
No 333
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=22.27 E-value=1e+03 Score=25.76 Aligned_cols=40 Identities=8% Similarity=-0.210 Sum_probs=26.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHH
Q 008137 151 AKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLP 196 (576)
Q Consensus 151 ~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~ 196 (576)
+.+.+...++++++.+.|...-|+..+. .|=|+..+..++
T Consensus 19 ~~d~~W~l~l~GTAIGAGmLfLPI~~g~------~Gf~p~lillll 58 (443)
T PRK13629 19 KSDTTWTLGLFGTAIGAGVLFFPIRAGF------GGLIPILLMLVL 58 (443)
T ss_pred cccchHHHHHHHHHHhHHHHHHHHHHhc------chHHHHHHHHHH
Confidence 4456788888888888887777776654 255555444433
No 334
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=20.35 E-value=1.4e+02 Score=23.57 Aligned_cols=70 Identities=7% Similarity=0.147 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHH-HhhccCCh-hHHhhcCCHHH
Q 008137 152 KIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGL-MMMLPESP-RWLYRQNKVDE 222 (576)
Q Consensus 152 ~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp-~~l~~~~~~~~ 222 (576)
+-+-++--+.+....++.+++.++|...-+... --+.+....+++++..+. |-+..+.| +|...+.+.++
T Consensus 4 ~gQ~~ae~l~~~il~~~~iisfi~Gy~~q~~~~-~~~~~~~g~~~~~lv~vP~Wp~y~r~p~~W~~~~~~~~~ 75 (76)
T PF06645_consen 4 KGQRLAEKLMQYILIISAIISFIVGYITQSFSY-TFYIYGAGVVLTLLVVVPPWPFYNRHPLKWLPPKPEKEK 75 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhheeCCcHhhcCCcccCCCCCccccc
No 335
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=20.30 E-value=8.4e+02 Score=24.30 Aligned_cols=38 Identities=24% Similarity=0.578 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhhhhhh
Q 008137 100 LLGADVLFFIGAIIMAIA-PQPWVIILGRIFVGLGVGMA 137 (576)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~-~~~~~l~~~R~l~G~~~g~~ 137 (576)
++.+++++++++++..+. ++.|.+.+.-++.+++.++.
T Consensus 2 L~~~~~~~~~~s~~~~l~~~~~~l~~~~~~~~~F~~~ml 40 (284)
T PF12805_consen 2 LIATLLCFALASLLVGLLFPYPWLLILVLALLTFFFGML 40 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 345555665666655554 45666666666666665543
No 336
>PRK15035 cytochrome bd-II oxidase subunit 1; Provisional
Probab=20.19 E-value=7.6e+02 Score=27.23 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 008137 48 ISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAI 116 (576)
Q Consensus 48 ~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 116 (576)
++..++.+.+..|+.-....-..-+.+.+.=+..+|-.++|| ||++||. -+.+..+.++|+.+.++
T Consensus 77 FG~nWs~ys~~vGdvfG~pLa~E~l~AFFlEstFlGl~lFGw--~rl~~~~-H~~~~~lVaiGt~lSA~ 142 (514)
T PRK15035 77 FGTNWSFYSNYVGDIFGAPLAMEALMAFFLESTFVGLFFFGW--QRLNKYQ-HLLVTWLVAFGSNLSAL 142 (514)
T ss_pred hhcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh--hhcchHH-HHHHHHHHHHHHHHHHH
Confidence 444556666555533333222244556666677888888998 9998554 45555555666665554
Done!