Query 008137
Match_columns 576
No_of_seqs 423 out of 1396
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 19:00:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008137.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008137hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 5.3E-46 1.8E-50 402.7 47.1 446 20-562 3-484 (491)
2 3o7q_A L-fucose-proton symport 100.0 3E-35 1E-39 313.0 38.4 375 24-535 21-427 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 4.9E-37 1.7E-41 327.9 22.7 402 24-540 23-433 (451)
4 4aps_A DI-OR tripeptide H+ sym 100.0 2.3E-30 7.7E-35 280.1 31.2 423 35-547 19-478 (491)
5 2gfp_A EMRD, multidrug resista 100.0 4E-31 1.4E-35 275.9 16.9 357 32-525 3-361 (375)
6 2cfq_A Lactose permease; trans 99.9 1.3E-27 4.6E-32 253.8 11.9 380 39-548 17-407 (417)
7 2xut_A Proton/peptide symporte 99.9 1.7E-26 5.8E-31 251.9 20.2 167 36-206 19-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.9E-12 6.6E-17 137.1 17.4 171 33-207 256-433 (451)
9 2cfq_A Lactose permease; trans 99.4 6.3E-12 2.2E-16 132.8 16.4 141 70-211 262-404 (417)
10 3o7q_A L-fucose-proton symport 99.3 2.5E-11 8.5E-16 128.2 17.3 159 41-205 270-430 (438)
11 2gfp_A EMRD, multidrug resista 99.2 4.9E-11 1.7E-15 123.5 10.6 171 287-546 10-180 (375)
12 4aps_A DI-OR tripeptide H+ sym 99.2 1.7E-10 5.7E-15 124.0 14.8 170 285-542 21-198 (491)
13 4gc0_A D-xylose-proton symport 99.1 1.2E-09 4E-14 117.2 19.0 174 35-211 283-467 (491)
14 2xut_A Proton/peptide symporte 99.1 3.2E-10 1.1E-14 122.9 14.3 169 287-542 22-200 (524)
15 2g9p_A Antimicrobial peptide l 26.0 26 0.00088 19.7 1.0 14 86-99 2-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=5.3e-46 Score=402.66 Aligned_cols=446 Identities=34% Similarity=0.586 Sum_probs=356.5
Q ss_pred HhhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccch-----hhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008137 20 IVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVE-----KKTWLQELIVSMAVAGAIFGAGFGGWINDRF 94 (576)
Q Consensus 20 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~ 94 (576)
.+.++++.+.+.++.+++.++.++|..+++..+|.+.++++.+. ....+.|++.+++.+|..+|++++|+++||+
T Consensus 3 ~~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~ 82 (491)
T 4gc0_A 3 TQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF 82 (491)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred CCcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566788888888899999999999999999999999886432 1233458999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHH------------------hcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhH
Q 008137 95 GRKISLLGADVLFFIGAIIMA------------------IAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGA 156 (576)
Q Consensus 95 Grr~~~~~~~~~~~i~~~~~~------------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~ 156 (576)
|||++++++.+++.+++++++ +++|+++++++|+++|+|.|+..+.+..+++|+.|+++|++
T Consensus 83 GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~ 162 (491)
T 4gc0_A 83 GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGK 162 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhh
Confidence 999999999999999999999 47899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-------chhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHH
Q 008137 157 LVSANGFLITGGQFLAYLINLAFTKAP-------GTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEK 229 (576)
Q Consensus 157 ~~~~~~~~~~~G~~l~~~l~~~l~~~~-------~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~ 229 (576)
..++.+.+..+|.++++.++..+.... ..||+.+.+..++.++.++..+++||||+|+..+++.+++++.+++
T Consensus 163 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~ 242 (491)
T 4gc0_A 163 LVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRK 242 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHH
T ss_pred hHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHH
Confidence 999999999999999999887765432 2599999999999988888889999999999999999999988877
Q ss_pred hCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcC
Q 008137 230 IYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGF 309 (576)
Q Consensus 230 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (576)
....+...++..+..+....++... .....+ .+++.........+.++.+.+.+.+|.+.+.+..+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (491)
T 4gc0_A 243 IMGNTLATQAVQEIKHSLDHGRKTG---------GRLLMF----GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGA 309 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---------THHHHS----CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSC
T ss_pred hcCCchhHHHHHHHHHHHHhhhhhh---------hHHHHh----cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCC
Confidence 6554433333222222211111110 001111 123345566666777788888888999998888776
Q ss_pred CchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCC
Q 008137 310 ASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCP 389 (576)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (576)
+............+..+++.++++++.||+|||+.++.+.....++++.+.......
T Consensus 310 -~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~---------------------- 366 (491)
T 4gc0_A 310 -STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ---------------------- 366 (491)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT----------------------
T ss_pred -CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc----------------------
Confidence 445555666777888899999999999999999999999888888877766554311
Q ss_pred cccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcC
Q 008137 390 AYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSP 469 (576)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 469 (576)
...+..++.+.++..++..
T Consensus 367 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 385 (491)
T 4gc0_A 367 -------------------------------------------------------------APGIVALLSMLFYVAAFAM 385 (491)
T ss_dssp -------------------------------------------------------------CCHHHHHHHHHHHHHHHHT
T ss_pred -------------------------------------------------------------cchHHHHHHHHHHHHHHHh
Confidence 1134556666677777788
Q ss_pred CcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH------hhccchhhHHHHHHHHHHHHHHHhhccC
Q 008137 470 GMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE------ALGSAGTFLLFAGFSLLGLVAIYLLVPE 543 (576)
Q Consensus 470 ~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~------~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 543 (576)
+.+++.+.+.+|++|++.|++++|+.+..+++++++++.+++.+.+ ..+...+|++++++++++.++.++++||
T Consensus 386 ~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 386 SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 8888889999999999999999999999999999999988876643 3455567889999999999999999999
Q ss_pred CCCCCHHHHHHHHhCCCCc
Q 008137 544 TKGLAFEEVEKMLETGFKP 562 (576)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~ 562 (576)
||++++||+|+..+++.++
T Consensus 466 Tkg~tLeei~~~f~~~~~~ 484 (491)
T 4gc0_A 466 TKGKTLEELEALWEPETKK 484 (491)
T ss_dssp CTTCCHHHHGGGTC-----
T ss_pred CCCCCHHHHHHHhCCCCcc
Confidence 9999999999887755443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=3e-35 Score=313.00 Aligned_cols=375 Identities=11% Similarity=0.009 Sum_probs=291.1
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHH
Q 008137 24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGA 103 (576)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~ 103 (576)
+++++..+..+++..++.+++....++.+|.+.++++.+..+. |++.+++.++..++++++|+++||+|||++++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~ 97 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA---GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITG 97 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH---HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHH
Confidence 3445666677778888899999999999999999999999888 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH---HhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008137 104 DVLFFIGAIIM---AIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT 180 (576)
Q Consensus 104 ~~~~~i~~~~~---~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~ 180 (576)
.++++++.+++ +++++++.++++|+++|++.+...+...++++|++|+++|++++++.+.+.++|.++++++++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 889999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -CCCch------------------------hHHHHHHhHHHHHHHHHHHhh--ccCChhHHhhcCCHHHHHHHHHHhCCc
Q 008137 181 -KAPGT------------------------WRWMLGVAGLPAVVQFGLMMM--LPESPRWLYRQNKVDEARAILEKIYPA 233 (576)
Q Consensus 181 -~~~~~------------------------Wr~~f~v~~~~~~~~~~~~~~--l~esp~~l~~~~~~~~~~~~l~~i~~~ 233 (576)
+..+. ||+.|++.+++.++..+.+++ .||+++....+++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-------------- 243 (438)
T 3o7q_A 178 LSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK-------------- 243 (438)
T ss_dssp HTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS--------------
T ss_pred hcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc--------------
Confidence 65544 999998888776666555443 4555431100000
Q ss_pred hhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHH-HHhhcCCch
Q 008137 234 DQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTI-VQFAGFASK 312 (576)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 312 (576)
.++...+.++.++++..+. ..+..+...........+.|.| +++..+.+.
T Consensus 244 ------------------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 294 (438)
T 3o7q_A 244 ------------------------QGSFSASLSRLARIRHWRW-----AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA 294 (438)
T ss_dssp ------------------------TTSHHHHHHHHTTCSHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred ------------------------ccchhhhHHHHHhChHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhccCCcch
Confidence 0011134455666655443 2222333334455666788888 888755578
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCccc
Q 008137 313 STALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYI 392 (576)
Q Consensus 313 ~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (576)
..++.......++.+++.++.++++||++||+.+..+.++..++.+++.+...
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 347 (438)
T 3o7q_A 295 GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG--------------------------- 347 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH---------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC---------------------------
Confidence 88888888889999999999999999999999998888777766655443311
Q ss_pred ccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcc
Q 008137 393 TDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMG 472 (576)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 472 (576)
...++.+.+.+++.+ ...
T Consensus 348 -------------------------------------------------------------~~~~~~~~~~g~~~~-~~~ 365 (438)
T 3o7q_A 348 -------------------------------------------------------------HVGLIALTLCSAFMS-IQY 365 (438)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHHT-THH
T ss_pred -------------------------------------------------------------cHHHHHHHHHHHHHH-HHH
Confidence 122333333444433 345
Q ss_pred cccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHH
Q 008137 473 TAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALG-SAGTFLLFAGFSLLGLV 535 (576)
Q Consensus 473 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~i~~~ 535 (576)
+..+.+..|.+|++ ++.+.++.. .+.+++.++|.+.|.+.+..| +...|++.+++.++..+
T Consensus 366 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 366 PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 66677878888876 888888877 678999999999999999998 88888776555544443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=4.9e-37 Score=327.88 Aligned_cols=402 Identities=15% Similarity=0.100 Sum_probs=303.7
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHH
Q 008137 24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGA 103 (576)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~ 103 (576)
++.+++.+..++++.++.+++...+++.+|.+.+++ .+..+. |++.+++.++..++++++|+++||+|||++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 98 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL---GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH---HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH---HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence 445677888888899999999999999999999999 888888 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh----cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137 104 DVLFFIGAIIMAI----APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF 179 (576)
Q Consensus 104 ~~~~~i~~~~~~~----~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l 179 (576)
.++++++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCchhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccc
Q 008137 180 TKAPGTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIG 258 (576)
Q Consensus 180 ~~~~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (576)
.+..++||+.|++.+++.++..++ ++.+||+|+....+.+.+..+ .. +.+. + +..+++...
T Consensus 179 ~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~-------~-~~~~~~~~~ 240 (451)
T 1pw4_A 179 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN--------DY--PDDY-------N-EKAEQELTA 240 (451)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC--------C-----------------------CC
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc--------cc--cccc-------h-hhhhccccc
Confidence 654434999999999888776554 567888876432221111000 00 0000 0 000000000
Q ss_pred hhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhc
Q 008137 259 KDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVD 338 (576)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d 338 (576)
++ ...++.++++. ++...+..+...........+.|.++++..+.+....+.+.....++.+++.++.+++.|
T Consensus 241 ~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 313 (451)
T 1pw4_A 241 KQ--IFMQYVLPNKL-----LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD 313 (451)
T ss_dssp TH--HHHHHTSSCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc--chHHHHHcCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 11234444443 333444444455556677888899998855557788888888889999999999999999
Q ss_pred cc--CChHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCC
Q 008137 339 KY--GRRRLMIVSMFGLS-SCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAH 415 (576)
Q Consensus 339 k~--grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (576)
|+ +||+.+..+..+.. ++++++...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 341 (451)
T 1pw4_A 314 KVFRGNRGATGVFFMTLVTIATIVYWMN---------------------------------------------------- 341 (451)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHHTTSC----------------------------------------------------
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHh----------------------------------------------------
Confidence 99 99988877666554 333322211
Q ss_pred CCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHH
Q 008137 416 KGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIA 495 (576)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~ 495 (576)
+....+...+...+.+.+.. +..+....+..|.+|++.||++.|+.
T Consensus 342 ---------------------------------~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~ 387 (451)
T 1pw4_A 342 ---------------------------------PAGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFT 387 (451)
T ss_dssp ---------------------------------CTTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred ---------------------------------cccCHHHHHHHHHHHHHHHh-chHHHHHHHHHHHhchhhhhhHHHHH
Confidence 00012333333333333332 33345567889999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhh
Q 008137 496 AVSNWT-SNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLL 540 (576)
Q Consensus 496 ~~~~~~-g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~ 540 (576)
+....+ |..++|.+.+.+.+..|+...|++.+++.+++.++.++.
T Consensus 388 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 388 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 999999999999999999889999888888877766554
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.98 E-value=2.3e-30 Score=280.09 Aligned_cols=423 Identities=13% Similarity=0.056 Sum_probs=267.6
Q ss_pred HHHHHhhhhhhhhHHHHHHH-HHHh-----hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCchHHHHHHHHHH
Q 008137 35 GIGGLLFGYDTGVISGALLY-IKED-----FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR-FGRKISLLGADVLF 107 (576)
Q Consensus 35 ~l~~~~~~~~~~~~~~~~~~-i~~~-----~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~ 107 (576)
.+..+...+......+.++. +.++ +|.+..+. +++.+++.++..++++++|+++|| +|||+++.++.++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~ 95 (491)
T 4aps_A 19 FMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATA---ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLI 95 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 33444445554444444444 4444 89888888 999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcch--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 008137 108 FIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKI--RGALVSANGFLITGGQFLAYLINLAFTKAPGT 185 (576)
Q Consensus 108 ~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~--R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~ 185 (576)
+++.++++++++++.++++|+++|++.+...+...++++|++|+++ |+.++++++.+.++|..++|.+++.+.+..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g- 174 (491)
T 4aps_A 96 MLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG- 174 (491)
T ss_dssp HHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-
Confidence 9999999999999999999999999999999999999999999988 7788888999999999999999999988776
Q ss_pred hHHHHHHhHHHHHHHHHHHhhc-cCCh----hHHhhcCCHHHHHHHHHH----------------hCCchhhhHHHHHHH
Q 008137 186 WRWMLGVAGLPAVVQFGLMMML-PESP----RWLYRQNKVDEARAILEK----------------IYPADQVEEEVNLLK 244 (576)
Q Consensus 186 Wr~~f~v~~~~~~~~~~~~~~l-~esp----~~l~~~~~~~~~~~~l~~----------------i~~~~~~~~~~~~~~ 244 (576)
||+.|++.++..++..+..++. ++.. +....+.+.++.++..+. .....+.+.......
T Consensus 175 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (491)
T 4aps_A 175 YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLT 254 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhh
Confidence 9999999877766655554332 2211 101111122222221111 000000000000000
Q ss_pred --HHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHH
Q 008137 245 --QSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVT 322 (576)
Q Consensus 245 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (576)
........... ..++ .......++ +..............+........+.|.+.++....+....+......
T Consensus 255 ~~~~~~~~~~~~~-~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (491)
T 4aps_A 255 IVAIAIPVFYFAW-MISS--VKVTSTEHL---RVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLN 328 (491)
T ss_dssp HHHHHHHHHHHHH-HC-----------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHH
T ss_pred HHHHHHHHHHHHH-Hhhc--ccccHHHHH---HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccc
Confidence 00000000000 0000 000000000 111112222223333344455566677777765444434555566667
Q ss_pred hHHHHHHHHHHHHhhcccCChHHHH-----HHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCC
Q 008137 323 SGLNALGSIVSMAFVDKYGRRRLMI-----VSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNA 397 (576)
Q Consensus 323 ~~~~~ig~~~~g~l~dk~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (576)
.+..+++.++.+++.||++||+... .+..+..++++++..........
T Consensus 329 ~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 381 (491)
T 4aps_A 329 PLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTS--------------------------- 381 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCC---------------------------
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCC---------------------------
Confidence 7778888999999999999986544 56666666655555443211000
Q ss_pred CcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccch
Q 008137 398 KSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWI 477 (576)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (576)
+....+..++...+.+.+.. ...+..+.
T Consensus 382 ---------------------------------------------------~~~~~~~~~~~~~l~g~~~~-~~~~~~~~ 409 (491)
T 4aps_A 382 ---------------------------------------------------GKVSPLWLVGSWALVILGEM-LISPVGLS 409 (491)
T ss_dssp ---------------------------------------------------TTCCTHHHHHHHHHHHHHHH-TTTTHHHH
T ss_pred ---------------------------------------------------CCccHHHHHHHHHHHHHHHH-HHhHHHHH
Confidence 00011333344444444433 33456678
Q ss_pred hccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 008137 478 VNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGL 547 (576)
Q Consensus 478 ~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 547 (576)
+..|.+|++.||++.|+.+....+|..+++.+.+.+.+ .++...|.+.+++++++.++.+++.++.+++
T Consensus 410 ~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 410 VTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999887665 4666788888888888877777766655443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=4e-31 Score=275.92 Aligned_cols=357 Identities=15% Similarity=0.085 Sum_probs=271.1
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008137 32 LSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA 111 (576)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~ 111 (576)
..+++..++.+++...+.+.+|.+.++++.+..+. +++.+++.++..++++++|+++||+|||+++.++.++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV---QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH---HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 45667778889999999999999999999998888 999999999999999999999999999999999999999999
Q ss_pred HHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 008137 112 IIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLG 191 (576)
Q Consensus 112 ~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~ 191 (576)
++.+++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.|+
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~ 158 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYL 158 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987665 999999
Q ss_pred HhHHHHHHHHH-HHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcc
Q 008137 192 VAGLPAVVQFG-LMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFG 270 (576)
Q Consensus 192 v~~~~~~~~~~-~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (576)
+.+++.++..+ .++.+||+++...++++ ..++.++.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~ 197 (375)
T 2gfp_A 159 FLLVLCAGVTFSMARWMPETRPVDAPRTR-----------------------------------------LLTSYKTLFG 197 (375)
T ss_dssp HHHHHHHHHHCCCCCSSCCCSTTTCCCCC-----------------------------------------TTTCSTHHHH
T ss_pred HHHHHHHHHHHHHHHHCcccCCCCccccc-----------------------------------------HHHHHHHHhc
Confidence 99888877766 35667887642111000 0022233333
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHH
Q 008137 271 NKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSM 350 (576)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~ 350 (576)
++.. +...+..+...........+.|.++++..+.+....+.......++.+++.++.+++.||++++. ..+.
T Consensus 198 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~ 270 (375)
T 2gfp_A 198 NSGF-----NCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSV 270 (375)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHH
T ss_pred Ccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 3332 22333334444556667778888887744447777888888888889999999999999988732 2222
Q ss_pred HH-HHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccc
Q 008137 351 FG-LSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDE 429 (576)
Q Consensus 351 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (576)
.. ...+..++........
T Consensus 271 ~~~~~~~~~~~~~~~~~~~------------------------------------------------------------- 289 (375)
T 2gfp_A 271 ICCLLAGLLMWIPDWFGVM------------------------------------------------------------- 289 (375)
T ss_dssp HHHHHTSSSSSHHHHHHHH-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhccc-------------------------------------------------------------
Confidence 22 2222221111111000
Q ss_pred cccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHH
Q 008137 430 KSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLT 509 (576)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~ 509 (576)
..+..++...+.+++.+ ...+....+..|.+| +.||++.|+.+....+|..++|.+
T Consensus 290 ----------------------~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~ 345 (375)
T 2gfp_A 290 ----------------------NVWTLLVPAALFFFGAG-MLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASL 345 (375)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHH-HTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred ----------------------cHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHH
Confidence 01333334444444443 234566678889998 899999999999999999999999
Q ss_pred HHHHHHhhccchhhHH
Q 008137 510 FLTLTEALGSAGTFLL 525 (576)
Q Consensus 510 ~~~l~~~~g~~~~~~~ 525 (576)
.+.+.+..++...+.+
T Consensus 346 ~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 346 SAMLPQTGQGSLGLLM 361 (375)
T ss_dssp CTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcccHHHHH
Confidence 9999887776655444
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.94 E-value=1.3e-27 Score=253.78 Aligned_cols=380 Identities=9% Similarity=-0.000 Sum_probs=240.7
Q ss_pred HhhhhhhhhHHHHHHHHH-HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH---HH
Q 008137 39 LLFGYDTGVISGALLYIK-EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAI---IM 114 (576)
Q Consensus 39 ~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~---~~ 114 (576)
++.........+.+|... +++|.+..+. |++.+++.++..++++++|+++||+|||++++++..+++++.. ..
T Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~ 93 (417)
T 2cfq_A 17 FFYFFIMGAYFPFFPIWLHDINHISKSDT---GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF 93 (417)
T ss_dssp HHHHHHHHHHTTTHHHHHHTTTCCCTTTS---HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566677754 5689998888 9999999999999999999999999999999998887765322 12
Q ss_pred HhcchHH-HHHHHHHHHHhhhhhhhhhHHHHHHhccCc--chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 008137 115 AIAPQPW-VIILGRIFVGLGVGMASMTAPLYISEASPA--KIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLG 191 (576)
Q Consensus 115 ~~~~~~~-~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~--~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~ 191 (576)
++++... .+...|++.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++++.+. +||+.|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~--~~~~~f~ 171 (417)
T 2cfq_A 94 IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFW 171 (417)
T ss_dssp THHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH--CSHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh--chhHHHH
Confidence 2322221 234566676666665555445555555443 3557677888788889999999999988763 4999999
Q ss_pred HhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhccc
Q 008137 192 VAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGN 271 (576)
Q Consensus 192 v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (576)
+.+++.++..+.+++.+|+++...++.+.++ .+.+ +...++.++.+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~----~~~~~~~~~~~~~ 219 (417)
T 2cfq_A 172 LGSGCALILAVLLFFAKTDAPSSATVANAVG----------------------------ANHS----AFSLKLALELFRQ 219 (417)
T ss_dssp TTTTTTTTHHHHSCSSCCCCSCSSCSSSSSS----------------------------SCCC----CCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCcccccccccccccc----------------------------cccc----cccHHHHHHHhcC
Confidence 8877765555554444443321000000000 0000 0001233445555
Q ss_pred chhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCC---chhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHH
Q 008137 272 KIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFA---SKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIV 348 (576)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~ 348 (576)
+..+...+ ..+.....+.....+.|.|+++.... +....+.......++.+++.++.++++||+|||+++..
T Consensus 220 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~ 294 (417)
T 2cfq_A 220 PKLWFLSL-----YVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLL 294 (417)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CchhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 54433221 11111222333334466666554321 23334566666677788899999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccc
Q 008137 349 SMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLID 428 (576)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (576)
+..+.+++.+++....
T Consensus 295 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 310 (417)
T 2cfq_A 295 AGTIMSVRIIGSSFAT---------------------------------------------------------------- 310 (417)
T ss_dssp HHHHHHHHHHHHTTCC----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhc----------------------------------------------------------------
Confidence 7766665544332110
Q ss_pred ccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHH-HHHHHHHHHHHH
Q 008137 429 EKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIA-AVSNWTSNLIVS 507 (576)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~-~~~~~~g~~~~~ 507 (576)
..+..++...+....+. ...+..+.+.+|.+|++.||++.++. +..+.+|++++|
T Consensus 311 -----------------------~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp 366 (417)
T 2cfq_A 311 -----------------------SALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS 366 (417)
T ss_dssp -----------------------SHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHT
T ss_pred -----------------------cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 01222222222222221 11223457889999999999999994 888899999999
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCC
Q 008137 508 LTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLA 548 (576)
Q Consensus 508 ~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 548 (576)
.+.|.+.+..|+...|.+.+++++++.++.+++.||+++.+
T Consensus 367 ~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 367 VLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred hhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 99999999888888888888888888877767677665544
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.94 E-value=1.7e-26 Score=251.90 Aligned_cols=167 Identities=19% Similarity=0.223 Sum_probs=144.2
Q ss_pred HHHHhhhhhhhhHHHHHHH-HHHhhc------cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchHHHHHHHHHH
Q 008137 36 IGGLLFGYDTGVISGALLY-IKEDFR------DVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF-GRKISLLGADVLF 107 (576)
Q Consensus 36 l~~~~~~~~~~~~~~~~~~-i~~~~~------~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~ 107 (576)
+..++..+......+.++. +.++++ .+..+. +++.+++.++..++++++|+++||+ |||+++.++.+++
T Consensus 19 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~ 95 (524)
T 2xut_A 19 ASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVA---KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIY 95 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTH---HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3444444454444455554 567788 888888 9999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhcc-hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHH---HHHHHHHHHHHHHHHHHHhcCCC
Q 008137 108 FIGAIIMAIAP-QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSA---NGFLITGGQFLAYLINLAFTKAP 183 (576)
Q Consensus 108 ~i~~~~~~~~~-~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~---~~~~~~~G~~l~~~l~~~l~~~~ 183 (576)
+++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+. ++...++|..+++.+++.+.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (524)
T 2xut_A 96 CVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF 175 (524)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999 999999999999999999999999999999999999876666 89999999999999999998777
Q ss_pred chhHHHHHHhHHHHHHHHHHHhh
Q 008137 184 GTWRWMLGVAGLPAVVQFGLMMM 206 (576)
Q Consensus 184 ~~Wr~~f~v~~~~~~~~~~~~~~ 206 (576)
+ ||+.|++.+++.++..+.++.
T Consensus 176 g-~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 176 G-AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHS
T ss_pred c-HHHHHHHHHHHHHHHHHHHHH
Confidence 6 999999988887766555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.43 E-value=1.9e-12 Score=137.14 Aligned_cols=171 Identities=17% Similarity=0.095 Sum_probs=144.6
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CchHHHHHHHHHHH-
Q 008137 33 SAGIGGLLFGYDTGVISGALLYIKED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF--GRKISLLGADVLFF- 108 (576)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~--Grr~~~~~~~~~~~- 108 (576)
...+..++.......+....|.+.++ ++.+..+. +++.+...++..++.++.|++.||+ |||+.+.++.++..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 332 (451)
T 1pw4_A 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS---SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 332 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 33444455555566667778887777 78888777 9999999999999999999999999 99999888887776
Q ss_pred HHHHHHHhc--chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHH-HHHHHHHHHHHhcCCCch
Q 008137 109 IGAIIMAIA--PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITG-GQFLAYLINLAFTKAPGT 185 (576)
Q Consensus 109 i~~~~~~~~--~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~-G~~l~~~l~~~l~~~~~~ 185 (576)
++.++..+. .+.+.+.+..++.|++.+...+....++.|.+|+++|++++++.+....+ |..+++.+.+.+.+..+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g- 411 (451)
T 1pw4_A 333 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG- 411 (451)
T ss_dssp HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 666666666 37888888899999999999999999999999999999999999999999 99999999999998877
Q ss_pred hHHHHHHhHHHHHHHHHHHhhc
Q 008137 186 WRWMLGVAGLPAVVQFGLMMML 207 (576)
Q Consensus 186 Wr~~f~v~~~~~~~~~~~~~~l 207 (576)
|+..|++.+++.++..+..+++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 412 WDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888887776665444
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.37 E-value=6.3e-12 Score=132.79 Aligned_cols=141 Identities=15% Similarity=0.100 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhcc
Q 008137 70 ELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEAS 149 (576)
Q Consensus 70 g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~ 149 (576)
++..++..++..++.++.|++.||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....++.|.+
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 78888888899999999999999999999999999988888888888888888888888999988877788889999999
Q ss_pred CcchhhHHHHH-HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHH-HhhccCCh
Q 008137 150 PAKIRGALVSA-NGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGL-MMMLPESP 211 (576)
Q Consensus 150 ~~~~R~~~~~~-~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp 211 (576)
|++.|+.+.++ ++....+|.+++|.+.+.+.+..+ ++..|.+.+++.++..+. ++..||.+
T Consensus 342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999998 588888999999999999887655 899999888887777665 34456543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.32 E-value=2.5e-11 Score=128.15 Aligned_cols=159 Identities=13% Similarity=-0.048 Sum_probs=128.2
Q ss_pred hhhhhhhHHHHHHHH-HHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc
Q 008137 41 FGYDTGVISGALLYI-KED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP 118 (576)
Q Consensus 41 ~~~~~~~~~~~~~~i-~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~ 118 (576)
.......+....|.+ .++ ++.+..+. +++.+...++..++.++.|++.||+|||+.+.++.++..++.++..+.+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (438)
T 3o7q_A 270 YVGAQTACWSYLIRYAVEEIPGMTAGFA---ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG 346 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhhhccCCcchhHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC
Confidence 333344455556665 555 48888777 9999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHH
Q 008137 119 QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAV 198 (576)
Q Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~ 198 (576)
+.+.++.. ++.|++.+...+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..++++..|++.++..+
T Consensus 347 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 347 GHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_dssp HHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHH
T ss_pred CcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88765554 8999999999999999999999866 888888777 55689999999999998876558888887665554
Q ss_pred HHHHHHh
Q 008137 199 VQFGLMM 205 (576)
Q Consensus 199 ~~~~~~~ 205 (576)
+.++..+
T Consensus 424 ~~~~~~~ 430 (438)
T 3o7q_A 424 VIFIFAR 430 (438)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 4444333
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.18 E-value=4.9e-11 Score=123.48 Aligned_cols=171 Identities=10% Similarity=0.015 Sum_probs=131.1
Q ss_pred HHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 008137 287 AQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQ 366 (576)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~ 366 (576)
+.............|.+.++.+. +..+.+.......++..++.++.|+++||+|||+.+..+.++..++.+++......
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 88 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARDLNV-REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSL 88 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSS-TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccH
Confidence 33444455556666777777666 67778888888999999999999999999999999999998888888777665321
Q ss_pred hhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccccccccccc
Q 008137 367 AAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFIS 446 (576)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (576)
T Consensus 89 -------------------------------------------------------------------------------- 88 (375)
T 2gfp_A 89 -------------------------------------------------------------------------------- 88 (375)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHH
Q 008137 447 GCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLF 526 (576)
Q Consensus 447 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~ 526 (576)
+..++...+.+.+.+ ...+....+..|.+|+++|++.+++.+....+|..++|.+.+.+.+..||+..|++.
T Consensus 89 -------~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 89 -------TVLIAASAMQGMGTG-VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp -------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHH-hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 233333333333332 234556678899999999999999999999999999999999999888999999888
Q ss_pred HHHHHHHHHHHHhhccCCCC
Q 008137 527 AGFSLLGLVAIYLLVPETKG 546 (576)
Q Consensus 527 ~~~~~i~~~~~~~~~~~~~~ 546 (576)
+++.++..+..++..||++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 161 LVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHHCcccCC
Confidence 88887777655666777654
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.18 E-value=1.7e-10 Score=124.01 Aligned_cols=170 Identities=16% Similarity=0.046 Sum_probs=126.8
Q ss_pred HHHHHHHhhHHHHhhhHHHHHhh-----cCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc-cCChHHHHHHHHHHHHHHH
Q 008137 285 QVAQQFVGINTVMYYSPTIVQFA-----GFASKSTALALSLVTSGLNALGSIVSMAFVDK-YGRRRLMIVSMFGLSSCLV 358 (576)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk-~grr~~~~~~~~~~~~~~~ 358 (576)
..+.....++....+.+.|+++. .+.+..+.+.+.....++..++.++.|+++|| +|||+++..+.++..++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (491)
T 4aps_A 21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI 100 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 33334444556666677777764 45578888899999999999999999999999 8999999999888877776
Q ss_pred HHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccc
Q 008137 359 ALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSD 438 (576)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (576)
++....
T Consensus 101 ~~~~~~-------------------------------------------------------------------------- 106 (491)
T 4aps_A 101 VLALPF-------------------------------------------------------------------------- 106 (491)
T ss_dssp HHHSCC--------------------------------------------------------------------------
T ss_pred HHHHhh--------------------------------------------------------------------------
Confidence 654320
Q ss_pred ccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008137 439 EHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRY--RGVGGGIAAVSNWTSNLIVSLTFLTLTEA 516 (576)
Q Consensus 439 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--rg~~~g~~~~~~~~g~~~~~~~~~~l~~~ 516 (576)
..+..++..++.+.+.+ ...+...++.+|.+|++. |+.+.++.+....+|..++|.+.+.+.+.
T Consensus 107 -------------~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 172 (491)
T 4aps_A 107 -------------GASALFGSIILIIIGTG-FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA 172 (491)
T ss_dssp -------------STTHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------hHHHHHHHHHHHHHHHH-hccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 01333334444443333 234566688899999988 77788888999999999999999999999
Q ss_pred hccchhhHHHHHHHHHHHHHHHhhcc
Q 008137 517 LGSAGTFLLFAGFSLLGLVAIYLLVP 542 (576)
Q Consensus 517 ~g~~~~~~~~~~~~~i~~~~~~~~~~ 542 (576)
.||+..|++.++..+++.++.++..+
T Consensus 173 ~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 173 AGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999988877777666554433
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.14 E-value=1.2e-09 Score=117.24 Aligned_cols=174 Identities=13% Similarity=0.001 Sum_probs=122.3
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008137 35 GIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM 114 (576)
Q Consensus 35 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~ 114 (576)
....+........+....|.+.+..+.+.... ........+...++.++.+++.||+|||+.++.+.....++.+..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l 359 (491)
T 4gc0_A 283 MLSIFQQFVGINVVLYYAPEVFKTLGASTDIA---LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSL 359 (491)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHhcchHHHHhcCCCccch---hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHH
Confidence 33334444455556666777888887776666 666677788888999999999999999999999988888777665
Q ss_pred Hhc-----chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----c
Q 008137 115 AIA-----PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP-----G 184 (576)
Q Consensus 115 ~~~-----~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~-----~ 184 (576)
+.. ++...+...-+..+....+..+....+.+|.+|.+.|+.++++......+|.++++.+...+.+.. .
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~ 439 (491)
T 4gc0_A 360 GTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHF 439 (491)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 542 122222222222222222345677889999999999999999999999999988887766654321 0
Q ss_pred hhHHHHHHhHHHHHHHHHH-HhhccCCh
Q 008137 185 TWRWMLGVAGLPAVVQFGL-MMMLPESP 211 (576)
Q Consensus 185 ~Wr~~f~v~~~~~~~~~~~-~~~l~esp 211 (576)
++.+.|++.++++++..+. ++++||+.
T Consensus 440 ~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 440 HNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred hhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 2556788888877776665 67899984
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.13 E-value=3.2e-10 Score=122.94 Aligned_cols=169 Identities=10% Similarity=-0.045 Sum_probs=123.9
Q ss_pred HHHHHhhHHHHhhhHHHHHhhcC------CchhHHHHHHHHHhHHHHHHHHHHHHhhccc-CChHHHHHHHHHHHHHHHH
Q 008137 287 AQQFVGINTVMYYSPTIVQFAGF------ASKSTALALSLVTSGLNALGSIVSMAFVDKY-GRRRLMIVSMFGLSSCLVA 359 (576)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~-grr~~~~~~~~~~~~~~~~ 359 (576)
+.....++....+.+.++++..+ .+..+.+.+.....++.+++.++.|+++||+ |||+++..+.++..++.++
T Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~ 101 (524)
T 2xut_A 22 ACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAF 101 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33344455566667777765444 4777888888888999999999999999999 9999999888888777766
Q ss_pred HHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccc
Q 008137 360 LAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDE 439 (576)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (576)
+.+..
T Consensus 102 ~~~~~--------------------------------------------------------------------------- 106 (524)
T 2xut_A 102 LAIFE--------------------------------------------------------------------------- 106 (524)
T ss_dssp HHHTS---------------------------------------------------------------------------
T ss_pred HHHhc---------------------------------------------------------------------------
Confidence 55431
Q ss_pred cccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhH---HHHHHHHHHHHHHHHHHHHHHh
Q 008137 440 HRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGI---AAVSNWTSNLIVSLTFLTLTEA 516 (576)
Q Consensus 440 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~---~~~~~~~g~~~~~~~~~~l~~~ 516 (576)
...+..++..++.+.+.+ ...+...++..|.+|++.|+...+. .+....+|..++|.+.+.+.+.
T Consensus 107 -----------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 107 -----------HSVQGFYTGLFLIALGSG-GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp -----------SCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred -----------ccHHHHHHHHHHHHHhcc-ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 001333444444444433 3445666888999999999877666 8888999999999999999998
Q ss_pred hccchhhHHHHHHHHHHHHHHHhhcc
Q 008137 517 LGSAGTFLLFAGFSLLGLVAIYLLVP 542 (576)
Q Consensus 517 ~g~~~~~~~~~~~~~i~~~~~~~~~~ 542 (576)
.||+..|++.+++.+++.++.++..+
T Consensus 175 ~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 175 FGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999888887776665544333
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=26.02 E-value=26 Score=19.70 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=11.4
Q ss_pred HHHHhhhccCchHH
Q 008137 86 FGGWINDRFGRKIS 99 (576)
Q Consensus 86 ~~G~l~dr~Grr~~ 99 (576)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 57889999999854
Done!