Query 008139
Match_columns 576
No_of_seqs 271 out of 1526
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 19:58:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11031 guanosine pentaphosph 100.0 4E-104 9E-109 864.8 58.5 491 9-554 2-494 (496)
2 PRK10854 exopolyphosphatase; P 100.0 2E-103 4E-108 863.4 58.4 495 13-559 11-509 (513)
3 COG0248 GppA Exopolyphosphatas 100.0 1.4E-93 3E-98 768.4 41.7 447 13-498 3-452 (492)
4 TIGR03706 exo_poly_only exopol 100.0 4.1E-63 9E-68 510.8 34.0 296 14-329 1-299 (300)
5 PF02541 Ppx-GppA: Ppx/GppA ph 100.0 2E-56 4.3E-61 458.6 28.5 282 28-331 1-284 (285)
6 PRK15080 ethanolamine utilizat 99.7 6.3E-15 1.4E-19 149.8 20.1 155 4-182 15-174 (267)
7 PF01150 GDA1_CD39: GDA1/CD39 98.9 1.7E-08 3.6E-13 110.0 12.8 148 14-162 9-183 (434)
8 TIGR02529 EutJ ethanolamine ut 98.7 1.4E-06 3E-11 87.3 18.9 147 18-184 2-149 (239)
9 KOG1386 Nucleoside phosphatase 98.4 2.3E-06 5E-11 91.0 10.8 147 13-162 9-181 (501)
10 PRK09472 ftsA cell division pr 98.3 1.8E-05 3.9E-10 85.9 18.0 167 10-182 5-243 (420)
11 KOG1385 Nucleoside phosphatase 98.3 1.4E-06 3E-11 90.7 8.4 147 13-162 67-232 (453)
12 PF01966 HD: HD domain; Inter 98.2 1.8E-07 3.9E-12 82.2 -0.4 106 361-490 3-121 (122)
13 TIGR01174 ftsA cell division p 98.0 0.00022 4.7E-09 76.2 18.2 161 15-182 2-235 (371)
14 TIGR01175 pilM type IV pilus a 98.0 0.0014 3.1E-08 69.2 23.4 38 145-182 190-227 (348)
15 COG0849 ftsA Cell division ATP 97.8 0.0012 2.7E-08 70.8 18.6 40 144-183 204-243 (418)
16 cd00077 HDc Metal dependent ph 97.8 6.4E-05 1.4E-09 66.8 6.9 112 361-493 5-127 (145)
17 smart00471 HDc Metal dependent 97.8 7.4E-05 1.6E-09 64.9 7.0 101 361-493 7-117 (124)
18 TIGR00295 conserved hypothetic 97.5 0.00039 8.3E-09 65.6 8.8 121 349-490 3-125 (164)
19 PF06723 MreB_Mbl: MreB/Mbl pr 97.5 0.0028 6E-08 66.3 14.8 118 56-181 64-183 (326)
20 PF06277 EutA: Ethanolamine ut 97.3 0.0062 1.3E-07 65.7 14.9 152 15-175 5-175 (473)
21 PRK10719 eutA reactivating fac 97.2 0.0035 7.5E-08 67.6 12.6 153 14-181 7-184 (475)
22 TIGR03401 cyanamide_fam HD dom 97.1 0.0064 1.4E-07 60.4 11.9 116 345-490 42-165 (228)
23 PRK13928 rod shape-determining 97.1 0.014 3.1E-07 61.4 15.3 118 56-182 66-186 (336)
24 PF11104 PilM_2: Type IV pilus 97.0 0.019 4.1E-07 60.6 15.6 40 144-183 181-220 (340)
25 PRK13930 rod shape-determining 96.8 0.022 4.8E-07 59.7 14.3 88 91-182 103-191 (335)
26 PRK13929 rod-share determining 96.8 0.033 7.1E-07 58.7 14.9 118 56-182 67-189 (335)
27 COG4972 PilM Tfp pilus assembl 96.7 0.15 3.3E-06 52.4 18.3 79 104-183 152-233 (354)
28 PRK12703 tRNA 2'-O-methylase; 96.6 0.0094 2E-07 62.3 9.1 121 346-492 174-296 (339)
29 TIGR00904 mreB cell shape dete 96.4 0.061 1.3E-06 56.5 14.2 88 91-182 101-189 (333)
30 TIGR00277 HDIG uncharacterized 96.4 0.0096 2.1E-07 48.0 6.2 67 361-453 7-78 (80)
31 PRK13927 rod shape-determining 96.4 0.074 1.6E-06 55.8 14.5 88 92-183 100-188 (334)
32 TIGR00241 CoA_E_activ CoA-subs 96.3 0.045 9.9E-07 55.0 12.1 129 15-183 2-134 (248)
33 TIGR03319 YmdA_YtgF conserved 96.3 0.017 3.6E-07 64.2 9.3 93 361-495 332-427 (514)
34 PRK12705 hypothetical protein; 96.1 0.027 5.8E-07 62.1 9.9 93 361-495 326-421 (508)
35 PRK12704 phosphodiesterase; Pr 96.0 0.03 6.6E-07 62.3 10.0 92 361-494 338-432 (520)
36 PRK07152 nadD putative nicotin 96.0 0.012 2.7E-07 62.1 6.6 93 361-493 199-311 (342)
37 COG3294 HD supefamily hydrolas 95.9 0.0094 2E-07 57.7 4.5 70 357-429 56-127 (269)
38 TIGR01596 cas3_HD CRISPR-assoc 95.7 0.028 6E-07 53.1 6.7 85 361-458 3-106 (177)
39 PRK00106 hypothetical protein; 95.6 0.051 1.1E-06 60.3 9.5 93 361-495 353-448 (535)
40 COG4820 EutJ Ethanolamine util 95.6 0.034 7.4E-07 53.2 6.6 140 12-176 28-173 (277)
41 smart00268 ACTIN Actin. ACTIN 95.5 0.13 2.8E-06 54.9 11.9 92 82-182 89-184 (373)
42 TIGR00488 putative HD superfam 95.5 0.052 1.1E-06 50.7 7.7 92 361-492 11-124 (158)
43 PRK10119 putative hydrolase; P 95.4 0.08 1.7E-06 52.6 9.2 95 360-473 27-129 (231)
44 PRK00227 glnD PII uridylyl-tra 95.3 0.02 4.2E-07 65.7 5.0 54 399-453 402-455 (693)
45 cd00012 ACTIN Actin; An ubiqui 95.2 0.16 3.4E-06 54.1 11.5 86 89-183 96-185 (371)
46 PRK03381 PII uridylyl-transfer 95.2 0.021 4.5E-07 66.8 4.8 53 400-453 443-495 (774)
47 COG1078 HD superfamily phospho 95.1 0.035 7.6E-07 60.0 5.8 65 361-441 54-118 (421)
48 COG1077 MreB Actin-like ATPase 95.0 0.16 3.4E-06 52.3 9.9 109 66-179 79-189 (342)
49 PTZ00280 Actin-related protein 95.0 0.38 8.2E-06 52.2 13.6 89 91-182 106-201 (414)
50 PRK05007 PII uridylyl-transfer 94.3 0.051 1.1E-06 64.5 5.3 55 399-454 498-552 (884)
51 TIGR02692 tRNA_CCA_actino tRNA 94.2 0.051 1.1E-06 59.9 4.8 55 400-454 280-344 (466)
52 PRK00275 glnD PII uridylyl-tra 94.2 0.048 1E-06 64.8 4.6 52 400-452 498-549 (895)
53 PTZ00004 actin-2; Provisional 94.1 1.1 2.3E-05 48.1 14.5 154 15-182 8-190 (378)
54 PRK04374 PII uridylyl-transfer 94.1 0.056 1.2E-06 63.9 5.0 53 400-453 487-539 (869)
55 PF08841 DDR: Diol dehydratase 94.0 0.27 5.8E-06 49.6 8.8 87 91-181 83-171 (332)
56 PRK01759 glnD PII uridylyl-tra 93.8 0.075 1.6E-06 62.9 5.2 55 399-454 473-527 (854)
57 COG5371 Golgi nucleoside dipho 93.7 0.076 1.6E-06 56.7 4.5 143 13-161 120-285 (549)
58 PRK03059 PII uridylyl-transfer 93.7 0.084 1.8E-06 62.5 5.5 54 399-453 477-530 (856)
59 COG4819 EutA Ethanolamine util 93.7 0.9 2E-05 46.9 11.9 153 16-175 8-177 (473)
60 PTZ00466 actin-like protein; P 93.3 1.6 3.5E-05 46.8 14.0 163 6-182 5-195 (380)
61 COG3437 Response regulator con 93.2 0.21 4.4E-06 52.2 6.6 110 360-490 187-308 (360)
62 PRK05092 PII uridylyl-transfer 93.1 0.13 2.7E-06 61.7 5.7 54 399-453 530-583 (931)
63 TIGR01693 UTase_glnD [Protein- 92.5 0.16 3.5E-06 60.2 5.5 54 399-453 465-518 (850)
64 PRK10885 cca multifunctional t 92.3 0.2 4.4E-06 54.2 5.5 53 401-453 247-306 (409)
65 smart00842 FtsA Cell division 92.3 0.62 1.3E-05 44.7 8.3 59 15-79 1-59 (187)
66 PF00370 FGGY_N: FGGY family o 92.3 0.71 1.5E-05 46.0 9.1 79 15-99 2-80 (245)
67 PRK13917 plasmid segregation p 92.1 0.34 7.3E-06 51.3 6.8 40 142-181 184-225 (344)
68 PTZ00452 actin; Provisional 91.8 2 4.4E-05 46.0 12.5 93 82-182 94-189 (375)
69 COG1418 Predicted HD superfami 91.3 0.24 5.3E-06 49.0 4.4 54 360-431 38-94 (222)
70 PF00022 Actin: Actin; InterP 91.1 3.7 7.9E-05 43.9 13.6 92 82-182 88-183 (393)
71 PTZ00281 actin; Provisional 90.7 2.3 4.9E-05 45.6 11.4 93 82-182 95-190 (376)
72 TIGR02621 cas3_GSU0051 CRISPR- 89.9 1.8 3.9E-05 50.8 10.3 82 361-458 678-789 (844)
73 TIGR03192 benz_CoA_bzdQ benzoy 89.7 4.6 0.0001 41.6 12.0 115 14-166 33-149 (293)
74 TIGR03739 PRTRC_D PRTRC system 89.5 0.69 1.5E-05 48.4 6.2 94 89-182 104-208 (320)
75 COG1940 NagC Transcriptional r 89.5 8.4 0.00018 39.9 14.3 144 13-174 6-163 (314)
76 COG2206 c-di-GMP phosphodieste 89.4 0.7 1.5E-05 48.9 6.1 108 361-495 151-276 (344)
77 TIGR03276 Phn-HD phosphonate d 88.9 1.9 4E-05 41.1 7.9 43 402-449 46-99 (179)
78 PRK13480 3'-5' exoribonuclease 87.9 1.5 3.3E-05 45.7 7.3 103 361-492 162-280 (314)
79 PRK13298 tRNA CCA-pyrophosphor 87.9 0.46 9.9E-06 51.3 3.6 55 400-454 247-310 (417)
80 CHL00094 dnaK heat shock prote 87.7 5.8 0.00013 45.5 12.6 72 106-181 153-230 (621)
81 TIGR01991 HscA Fe-S protein as 87.4 7.3 0.00016 44.5 13.0 116 59-182 103-225 (599)
82 PRK00290 dnaK molecular chaper 86.5 4.5 9.8E-05 46.4 10.8 106 69-180 115-227 (627)
83 COG2844 GlnD UTP:GlnB (protein 86.3 0.56 1.2E-05 53.9 3.2 54 398-452 482-535 (867)
84 PF00480 ROK: ROK family; Int 86.1 11 0.00024 35.3 11.7 140 17-174 1-148 (179)
85 TIGR02261 benz_CoA_red_D benzo 85.3 5.2 0.00011 40.6 9.3 118 14-166 2-121 (262)
86 PRK01286 deoxyguanosinetriphos 85.2 2.6 5.7E-05 44.3 7.4 36 361-414 65-100 (336)
87 PF00012 HSP70: Hsp70 protein; 84.9 6.2 0.00014 44.7 11.0 76 104-182 151-232 (602)
88 PRK05183 hscA chaperone protei 84.8 10 0.00022 43.5 12.5 108 68-181 130-244 (616)
89 TIGR02350 prok_dnaK chaperone 84.6 6.3 0.00014 44.9 10.8 107 69-180 112-225 (595)
90 TIGR03286 methan_mark_15 putat 84.6 3.8 8.3E-05 44.0 8.3 118 13-166 144-264 (404)
91 PTZ00186 heat shock 70 kDa pre 84.4 11 0.00023 43.6 12.5 73 102-178 174-252 (657)
92 PRK10939 autoinducer-2 (AI-2) 83.7 3.3 7.2E-05 46.3 7.9 79 13-98 3-84 (520)
93 PRK13410 molecular chaperone D 83.7 11 0.00025 43.5 12.4 113 60-180 110-229 (668)
94 PTZ00400 DnaK-type molecular c 83.3 9.4 0.0002 44.2 11.5 107 69-181 156-269 (663)
95 PRK13321 pantothenate kinase; 82.9 29 0.00062 35.0 13.7 130 15-166 2-147 (256)
96 PRK13318 pantothenate kinase; 82.9 13 0.00028 37.5 11.1 128 15-166 2-147 (258)
97 KOG2517 Ribulose kinase and re 82.3 5.2 0.00011 44.3 8.4 83 12-99 5-90 (516)
98 PLN03184 chloroplast Hsp70; Pr 82.0 12 0.00026 43.3 11.8 72 106-181 190-267 (673)
99 PF14450 FtsA: Cell division p 81.2 2.9 6.3E-05 37.0 5.1 32 146-177 2-33 (120)
100 smart00732 YqgFc Likely ribonu 80.3 6.4 0.00014 33.0 6.7 84 15-122 3-91 (99)
101 PRK11678 putative chaperone; P 79.8 18 0.00039 39.8 11.6 86 70-161 132-227 (450)
102 PF01869 BcrAD_BadFG: BadF/Bad 79.5 27 0.00058 35.3 12.2 127 17-168 2-131 (271)
103 TIGR00555 panK_eukar pantothen 79.5 76 0.0016 32.6 15.2 132 16-181 3-138 (279)
104 TIGR01353 dGTP_triPase deoxygu 79.2 2.5 5.5E-05 45.3 4.7 85 361-453 41-146 (381)
105 PRK00047 glpK glycerol kinase; 79.0 7.1 0.00015 43.4 8.4 78 13-99 5-85 (498)
106 PRK01433 hscA chaperone protei 78.8 9.7 0.00021 43.4 9.5 88 68-161 122-211 (595)
107 TIGR02628 fuculo_kin_coli L-fu 78.7 8.6 0.00019 42.3 8.9 77 14-99 2-81 (465)
108 TIGR00744 ROK_glcA_fam ROK fam 78.6 50 0.0011 34.1 14.1 132 17-167 2-147 (318)
109 PTZ00009 heat shock 70 kDa pro 78.1 25 0.00054 40.7 12.6 108 69-180 122-236 (653)
110 PRK13411 molecular chaperone D 77.3 19 0.00042 41.5 11.5 114 60-180 108-228 (653)
111 COG0443 DnaK Molecular chapero 76.2 16 0.00034 41.6 10.1 96 59-161 94-190 (579)
112 PRK04123 ribulokinase; Provisi 75.6 12 0.00027 42.0 9.2 82 13-100 3-91 (548)
113 COG1070 XylB Sugar (pentulose 75.2 11 0.00025 41.9 8.6 80 12-99 3-85 (502)
114 PF14450 FtsA: Cell division p 74.8 2.3 5E-05 37.6 2.5 27 15-41 1-27 (120)
115 PF06406 StbA: StbA protein; 73.6 8.6 0.00019 40.1 6.8 100 80-183 87-207 (318)
116 KOG2681 Metal-dependent phosph 73.3 4.4 9.6E-05 43.4 4.4 70 361-444 76-149 (498)
117 TIGR01311 glycerol_kin glycero 73.2 9.4 0.0002 42.4 7.3 77 14-99 2-81 (493)
118 COG1713 Predicted HD superfami 72.7 4.8 0.0001 38.5 4.1 71 361-455 20-112 (187)
119 TIGR01234 L-ribulokinase L-rib 72.1 14 0.00031 41.4 8.6 80 14-99 2-93 (536)
120 PRK01096 deoxyguanosinetriphos 70.1 5.3 0.00012 43.7 4.4 50 361-413 64-113 (440)
121 PTZ00294 glycerol kinase-like 69.4 19 0.0004 40.2 8.6 77 14-99 3-84 (504)
122 PRK05318 deoxyguanosinetriphos 69.1 6.1 0.00013 43.2 4.5 83 361-452 61-163 (432)
123 PRK09698 D-allose kinase; Prov 68.7 1.3E+02 0.0029 30.7 14.3 136 13-168 4-154 (302)
124 COG4341 Predicted HD phosphohy 67.7 2.6 5.6E-05 39.1 1.1 20 401-420 50-69 (186)
125 COG2971 Predicted N-acetylgluc 67.6 75 0.0016 32.9 11.7 135 13-174 5-149 (301)
126 TIGR03760 ICE_TraI_Pfluor inte 67.4 6.4 0.00014 38.9 3.9 19 397-415 103-121 (218)
127 COG1924 Activator of 2-hydroxy 67.2 34 0.00073 36.4 9.2 138 9-183 131-272 (396)
128 PRK10331 L-fuculokinase; Provi 66.3 34 0.00073 37.7 9.8 78 14-100 3-83 (470)
129 COG0554 GlpK Glycerol kinase [ 66.0 18 0.00038 39.6 7.1 82 12-99 4-85 (499)
130 PRK03007 deoxyguanosinetriphos 65.2 15 0.00033 40.0 6.6 73 361-452 73-169 (428)
131 PF01968 Hydantoinase_A: Hydan 64.4 8.2 0.00018 39.8 4.2 53 116-172 53-106 (290)
132 TIGR01315 5C_CHO_kinase FGGY-f 64.1 32 0.00069 38.7 9.2 73 15-96 2-77 (541)
133 PRK13317 pantothenate kinase; 63.9 1.8E+02 0.0039 29.8 15.2 63 114-180 67-132 (277)
134 PF11215 DUF3010: Protein of u 63.3 1.2E+02 0.0026 27.7 11.4 100 14-126 2-105 (138)
135 PRK04926 dgt deoxyguanosinetri 62.4 11 0.00023 42.0 4.8 50 361-413 68-121 (503)
136 TIGR01312 XylB D-xylulose kina 59.1 23 0.00049 39.0 6.8 72 17-97 2-76 (481)
137 COG1069 AraB Ribulose kinase [ 59.0 32 0.0007 38.2 7.7 78 13-96 3-81 (544)
138 PRK13311 N-acetyl-D-glucosamin 58.6 1.2E+02 0.0026 30.3 11.5 133 15-167 2-146 (256)
139 PLN02295 glycerol kinase 57.2 37 0.00081 37.9 8.2 76 15-99 2-84 (512)
140 cd08190 HOT Hydroxyacid-oxoaci 55.8 18 0.00038 39.4 5.1 80 71-155 10-92 (414)
141 PRK13310 N-acetyl-D-glucosamin 52.0 1.6E+02 0.0035 30.0 11.5 132 15-168 2-147 (303)
142 PRK09557 fructokinase; Reviewe 51.5 1.5E+02 0.0032 30.4 11.0 133 15-169 2-148 (301)
143 TIGR01314 gntK_FGGY gluconate 51.1 53 0.0011 36.6 8.1 74 15-98 2-78 (505)
144 cd08192 Fe-ADH7 Iron-containin 50.7 22 0.00047 37.9 4.8 80 71-155 11-93 (370)
145 PRK15027 xylulokinase; Provisi 50.5 57 0.0012 36.0 8.2 76 15-99 2-78 (484)
146 PRK13324 pantothenate kinase; 49.5 2.9E+02 0.0064 27.9 12.7 131 15-167 2-148 (258)
147 PRK09860 putative alcohol dehy 49.5 70 0.0015 34.3 8.4 78 71-155 18-100 (383)
148 cd08191 HHD 6-hydroxyhexanoate 48.7 34 0.00073 36.8 5.9 79 71-155 10-91 (386)
149 COG3894 Uncharacterized metal- 47.6 31 0.00067 38.0 5.2 162 11-176 161-360 (614)
150 cd08188 Fe-ADH4 Iron-containin 47.0 53 0.0012 35.1 7.1 80 71-155 15-97 (377)
151 PF14574 DUF4445: Domain of un 46.7 19 0.00041 39.1 3.5 158 15-176 3-196 (412)
152 PRK00976 hypothetical protein; 45.4 3.5E+02 0.0076 28.5 12.4 61 104-169 94-174 (326)
153 PF01890 CbiG_C: Cobalamin syn 44.8 88 0.0019 27.8 7.0 53 75-130 21-73 (121)
154 TIGR02707 butyr_kinase butyrat 44.5 4E+02 0.0086 28.3 13.0 26 142-168 173-198 (351)
155 KOG0100 Molecular chaperones G 44.2 1.9E+02 0.0042 31.2 10.2 103 48-165 137-249 (663)
156 TIGR01175 pilM type IV pilus a 44.2 1.1E+02 0.0023 32.0 8.8 34 87-125 284-317 (348)
157 PRK00109 Holliday junction res 42.9 1.8E+02 0.0039 26.4 8.9 94 14-131 5-108 (138)
158 PRK13331 pantothenate kinase; 42.9 1.9E+02 0.0041 29.2 9.8 25 1-31 1-25 (251)
159 PF00633 HHH: Helix-hairpin-he 42.8 14 0.0003 24.4 1.1 26 268-295 3-28 (30)
160 PRK15454 ethanol dehydrogenase 42.6 82 0.0018 34.0 7.7 80 71-155 36-118 (395)
161 PRK10624 L-1,2-propanediol oxi 42.4 85 0.0018 33.6 7.8 77 72-155 18-99 (382)
162 PLN02669 xylulokinase 42.2 91 0.002 35.3 8.3 81 12-98 7-99 (556)
163 TIGR02638 lactal_redase lactal 42.2 90 0.002 33.4 7.9 78 71-155 16-98 (379)
164 cd08551 Fe-ADH iron-containing 41.7 1E+02 0.0023 32.6 8.3 78 71-155 10-92 (370)
165 TIGR03706 exo_poly_only exopol 41.3 1.6E+02 0.0035 30.3 9.4 57 15-74 127-184 (300)
166 cd08189 Fe-ADH5 Iron-containin 37.9 47 0.001 35.4 4.9 80 71-155 13-95 (374)
167 TIGR03123 one_C_unchar_1 proba 37.2 37 0.0008 35.5 3.8 139 17-174 2-159 (318)
168 cd08176 LPO Lactadehyde:propan 36.4 51 0.0011 35.2 4.9 80 71-155 15-97 (377)
169 TIGR02627 rhamnulo_kin rhamnul 36.2 58 0.0013 35.7 5.4 17 17-33 2-18 (454)
170 TIGR01319 glmL_fam conserved h 36.0 80 0.0017 34.7 6.2 22 144-165 250-271 (463)
171 cd07766 DHQ_Fe-ADH Dehydroquin 35.8 42 0.00091 35.0 4.1 78 72-155 11-90 (332)
172 PRK10854 exopolyphosphatase; P 35.2 1.7E+02 0.0036 32.8 8.9 57 14-73 138-195 (513)
173 PRK07027 cobalamin biosynthesi 34.0 1.1E+02 0.0025 27.2 6.0 61 60-129 14-74 (126)
174 TIGR02578 cas_TM1811_Csm1 CRIS 33.9 18 0.0004 41.6 1.0 28 403-430 2-37 (648)
175 COG1454 EutG Alcohol dehydroge 32.8 1.5E+02 0.0033 31.8 7.7 78 71-155 16-98 (377)
176 COG0232 Dgt dGTP triphosphohyd 32.5 50 0.0011 35.7 3.9 41 361-414 71-111 (412)
177 cd08194 Fe-ADH6 Iron-containin 32.1 62 0.0014 34.5 4.7 80 71-155 10-92 (375)
178 PF10298 WhiA_N: WhiA N-termin 30.7 2.1E+02 0.0045 23.5 6.7 62 474-564 4-65 (86)
179 cd08169 DHQ-like Dehydroquinat 29.1 1.8E+02 0.0039 30.7 7.5 79 74-156 13-96 (344)
180 COG3481 Predicted HD-superfami 27.4 65 0.0014 33.1 3.6 26 397-422 163-188 (287)
181 PRK13321 pantothenate kinase; 27.0 93 0.002 31.3 4.7 28 145-172 2-29 (256)
182 cd08193 HVD 5-hydroxyvalerate 26.9 93 0.002 33.2 4.9 80 71-155 13-95 (376)
183 cd08185 Fe-ADH1 Iron-containin 26.8 2.1E+02 0.0046 30.5 7.7 74 74-155 16-95 (380)
184 PF03610 EIIA-man: PTS system 26.3 94 0.002 27.0 4.0 51 105-155 13-71 (116)
185 PRK12408 glucokinase; Provisio 25.9 2.6E+02 0.0056 29.3 8.0 102 8-130 10-125 (336)
186 cd08181 PPD-like 1,3-propanedi 25.6 1E+02 0.0022 32.6 4.9 76 74-155 16-95 (357)
187 COG4680 Uncharacterized protei 25.6 57 0.0012 27.5 2.2 19 15-33 56-74 (98)
188 PRK00292 glk glucokinase; Prov 25.5 5E+02 0.011 26.7 10.0 119 14-154 3-139 (316)
189 COG0248 GppA Exopolyphosphatas 25.2 2.3E+02 0.0051 31.5 7.7 78 13-97 129-211 (492)
190 PF11762 Arabinose_Iso_C: L-ar 24.8 95 0.0021 27.3 3.6 19 14-33 32-50 (115)
191 cd08186 Fe-ADH8 Iron-containin 24.7 2.7E+02 0.0059 29.7 8.0 76 73-155 12-96 (383)
192 TIGR02259 benz_CoA_red_A benzo 24.7 1.2E+02 0.0026 32.8 5.1 19 13-31 2-20 (432)
193 KOG1573 Aldehyde reductase [Ge 24.7 71 0.0015 29.8 2.9 23 400-422 116-138 (204)
194 cd08175 G1PDH Glycerol-1-phosp 24.6 1E+02 0.0022 32.5 4.6 78 72-155 11-92 (348)
195 cd08549 G1PDH_related Glycerol 24.5 1.4E+02 0.0031 31.2 5.7 74 77-155 16-92 (332)
196 PRK11031 guanosine pentaphosph 24.3 2.4E+02 0.0053 31.4 7.8 57 14-73 133-190 (496)
197 cd08182 HEPD Hydroxyethylphosp 24.1 1.7E+02 0.0037 31.0 6.4 57 396-456 230-289 (367)
198 COG0816 Predicted endonuclease 23.8 4.7E+02 0.01 24.0 8.1 87 14-123 3-96 (141)
199 cd08550 GlyDH-like Glycerol_de 23.3 88 0.0019 33.0 3.9 77 72-155 11-89 (349)
200 PF13941 MutL: MutL protein 22.9 1.5E+02 0.0033 32.6 5.6 53 15-75 2-55 (457)
201 PRK13318 pantothenate kinase; 22.8 1.4E+02 0.0029 30.1 5.0 29 145-173 2-30 (258)
202 TIGR00250 RNAse_H_YqgF RNAse H 22.1 1.8E+02 0.0038 26.2 5.0 83 17-123 2-91 (130)
203 PF00233 PDEase_I: 3'5'-cyclic 22.0 1.4E+02 0.0029 29.8 4.7 42 361-413 5-46 (237)
204 PF08668 HDOD: HDOD domain; I 21.8 81 0.0018 29.9 3.0 46 361-423 97-142 (196)
205 TIGR00329 gcp_kae1 metallohydr 21.5 9E+02 0.019 24.9 12.2 104 72-182 53-166 (305)
206 PRK00002 aroB 3-dehydroquinate 21.3 3.8E+02 0.0081 28.4 8.2 71 78-156 25-105 (358)
207 KOG3782 Predicted membrane pro 21.1 2.2E+02 0.0047 26.8 5.3 65 17-97 49-113 (189)
208 KOG0679 Actin-related protein 20.9 93 0.002 33.2 3.3 90 81-178 99-191 (426)
209 COG2254 Predicted HD superfami 20.9 38 0.00083 33.6 0.5 31 397-427 49-89 (230)
210 PF14829 GPAT_N: Glycerol-3-ph 20.5 69 0.0015 26.0 1.8 41 95-135 3-46 (77)
211 COG1548 Predicted transcriptio 20.4 5.4E+02 0.012 26.3 8.2 129 14-164 4-151 (330)
212 COG0145 HyuA N-methylhydantoin 20.4 1.1E+02 0.0023 35.6 4.0 32 144-175 279-310 (674)
No 1
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=100.00 E-value=4.2e-104 Score=864.80 Aligned_cols=491 Identities=28% Similarity=0.383 Sum_probs=440.2
Q ss_pred cCCCceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCccc
Q 008139 9 QIPQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDH 88 (576)
Q Consensus 9 ~~~~~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~ 88 (576)
..+.+.+|||||||||+||+|+++.+ +.++++++.|++||||+|++.+|.|++++|+|+++||++|+++|++|+|+ +
T Consensus 2 ~~~~~~~A~IDIGSNSirL~I~~~~~-~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~~~~~~v~--~ 78 (496)
T PRK11031 2 LSSSSLYAAIDLGSNSFHMLVVREVA-GSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAERLQDIPPS--Q 78 (496)
T ss_pred CCCCCEEEEEEccccceeEEEEEecC-CceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--e
Confidence 34467899999999999999999864 78999999999999999999999999999999999999999999999995 7
Q ss_pred EEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCeEeeE
Q 008139 89 TRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (576)
Q Consensus 89 i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~ 168 (576)
|++|||+|+|+|+|+++|+++|+++||++|+||||+|||+|+|+||.+.++.. ++++++||||||||+++++++++.++
T Consensus 79 i~~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~-~~~lviDIGGGStEl~~~~~~~~~~~ 157 (496)
T PRK11031 79 IRVVATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGA-DQRLVVDIGGASTELVTGTGAQATSL 157 (496)
T ss_pred EEEEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCC-CCEEEEEecCCeeeEEEecCCceeee
Confidence 99999999999999999999999999999999999999999999999998753 45899999999999999999999999
Q ss_pred EeechhHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhhhhhHHHHhcCCcEEEeehHHHHHHHHHHHcCCCCccccCCC
Q 008139 169 ESVNLGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVSGYDRDFVDNVG 247 (576)
Q Consensus 169 ~SlplG~vrl~e~f~~~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~lvG~gGt~~~la~~~~~~y~~~~~~~~~ 247 (576)
+|+|+|+||++++|+.++ +++.+..++.+|+++.+.+. .++++..++..+||+|||+++++++.... .
T Consensus 158 ~Sl~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~lig~gGt~~~la~~~~~~-~-------- 226 (496)
T PRK11031 158 FSLSMGCVTWLERYFKDRNLTQENFDAAEKAAREVLRPV--ADELREHGWQVCVGASGTVQALQEIMMAQ-G-------- 226 (496)
T ss_pred eEEeccchHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH--HHHHhhcCCCEEEEEChHHHHHHHHHHhc-C--------
Confidence 999999999999998864 57777888899999998743 44555556667999999999999875321 1
Q ss_pred CCCCCccccccCHHHHHHHHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCCchHHHHHHH
Q 008139 248 DFGGCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVAD 327 (576)
Q Consensus 248 ~~~~~~~~~~i~~~~l~~l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~glReGil~~ 327 (576)
.+ ..++.++++++++++..++.+ ++.+++||+++|+|+|+||++|+.++|+.+++++|+||++|||||++++
T Consensus 227 -----~~-~~i~~~~l~~l~~~l~~~~~~--~~~~~~gl~~~Radii~~g~~Il~~i~~~~~~~~i~vs~~glREGl~~~ 298 (496)
T PRK11031 227 -----MD-ERITLAKLQQLKQRAIQCGRL--EELEIEGLTLERALVFPSGLAILIAIFEELNIESMTLAGGALREGLVYG 298 (496)
T ss_pred -----CC-CcCCHHHHHHHHHHHhcCCHH--HHhcCCCCCccHHHHHHHHHHHHHHHHHHcCcCEEEECCchHHHHHHHH
Confidence 01 248999999999999999987 9999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCCchhhHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHH
Q 008139 328 SLAKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACL 407 (576)
Q Consensus 328 ~l~~~~~~~~~~~~~~~~s~~~l~~ry~~d~~~~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~Aal 407 (576)
++.+. ...|++..|+.++++||++|. .|+++|+++|++|||+|++.|++ ++++++||+|||+
T Consensus 299 ~~~~~-----~~~d~~~~s~~~l~~ry~~d~--~ha~~v~~~a~~Lf~~l~~~~~l-----------~~~~~~LL~~Aa~ 360 (496)
T PRK11031 299 MLHLP-----VEQDIRSRTLRNIQRRFQIDT--EQAQRVAKLADNFLQQVENEWHL-----------EPRSRELLISACQ 360 (496)
T ss_pred HHhhh-----cccchHHHHHHHHHHHcCcCH--HHHHHHHHHHHHHHHhhhhhcCC-----------ChHHHHHHHHHHH
Confidence 98753 134778889999999999987 89999999999999999999975 4467899999999
Q ss_pred HhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhccCChHHHHHHHHHHHHHHHHHH
Q 008139 408 LHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVI 487 (576)
Q Consensus 408 LHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~ 487 (576)
|||||++||+++||+||||||+|++ ++||||+|+.+||++++||||+.|+..++.+..|+++ .+.+|++|||||++
T Consensus 361 LhdiG~~I~~~~~~~Hs~yiI~~s~-l~G~s~~E~~~iA~i~~~h~k~~~~~~~~~~~~l~~~---~v~~L~~iLRLA~~ 436 (496)
T PRK11031 361 LHEIGLSVDFKQAPQHAAYLVRNLD-LPGFTPAQKKLLATLLLNQTNPVDLSSLHQQNALPPR---VAERLCRLLRLAII 436 (496)
T ss_pred HHhcCCccCCCccchHHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCchhhhhhhhccCHH---HHHHHHHHHHHHHH
Confidence 9999999999999999999999998 9999999999999999999999887666677778766 49999999999999
Q ss_pred hcc-ccCCCCcceEEEEeCceeEEEEeeCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCceEEEE
Q 008139 488 LQQ-NDCVNLRGVDFFHSYEGFKLVIKEARDQPYLPGSSQPTLDNIEAELEKELEHFKKIFKQELLVV 554 (576)
Q Consensus 488 Ld~-s~~~~i~~i~~~~~~~~~~L~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~f~~~fg~~l~i~ 554 (576)
||+ ++.++++++++.++++.++|+++.. |...+|. + .+++++++++|+++ |.++.+.
T Consensus 437 Ld~~~~~~~i~~~~~~~~~~~l~l~~~~~------~~~~~~l-~--~~~l~~e~~~~~~~-~~~l~~~ 494 (496)
T PRK11031 437 FASRRRDDLLPEVTLQANDELLTLTLPQG------WLAQHPL-G--AEELEQESQWQSYV-HWPLEVE 494 (496)
T ss_pred hccccCCCCCCceEEEEeCCEEEEEEChh------hhhhCcc-h--HHHHHHHHHHHHhC-CceEEEe
Confidence 994 5678999999998888888888665 5556664 3 59999999999999 8888764
No 2
>PRK10854 exopolyphosphatase; Provisional
Probab=100.00 E-value=2e-103 Score=863.44 Aligned_cols=495 Identities=25% Similarity=0.387 Sum_probs=437.6
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEE
Q 008139 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (576)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (576)
+.+|||||||||+||+|+++. ++.++++++.|++||||+|++.+|.|++++|+|++++|++|+++|++|+|+ ++++|
T Consensus 11 ~~~A~IDIGSNSirL~I~e~~-~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~~~~~~v~--~v~~v 87 (513)
T PRK10854 11 QEFAAVDLGSNSFHMVIARVV-DGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAERLQGFSPA--NVCIV 87 (513)
T ss_pred CEEEEEEeccchheEEEEEec-CCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--eEEEE
Confidence 579999999999999999986 578999999999999999999999999999999999999999999999995 79999
Q ss_pred eehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCeEeeEEeec
Q 008139 93 ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVN 172 (576)
Q Consensus 93 ATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~Slp 172 (576)
||+|+|+|+|+++|+++|+++||++|+||||+|||+|+|+||.+.++. .++++++||||||||+++++++++.+..|+|
T Consensus 88 ATsAlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~-~~~~lvvDIGGGStEl~~~~~~~~~~~~S~~ 166 (513)
T PRK10854 88 GTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPE-KGRKLVIDIGGGSTELVIGENFEPILVESRR 166 (513)
T ss_pred ehHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCC-CCCeEEEEeCCCeEEEEEecCCCeeEeEEEe
Confidence 999999999999999999999999999999999999999999999874 3568999999999999999999999999999
Q ss_pred hhHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhhhhhHHHHhcCCcEEEeehHHHHHHHHHHHcCCCCccccCCCCCCC
Q 008139 173 LGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGDFGG 251 (576)
Q Consensus 173 lG~vrl~e~f~~~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~lvG~gGt~~~la~~~~~~y~~~~~~~~~~~~~ 251 (576)
+|+||+++.|+.++ +++.++.++.+++.+.+....|. .+..++..+||+|||+++++++.... .
T Consensus 167 lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~lig~gGT~r~la~i~~~~-~------------ 231 (513)
T PRK10854 167 MGCVSFAQLYFPGGVISKENFQRARLAAAQKLETLAWQ--YRIQGWNVALGASGTIKAAHEVLVEM-G------------ 231 (513)
T ss_pred cceeeHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHH--hhhcCCCEEEEechHHHHHHHHHHhC-C------------
Confidence 99999999998764 57777888899999998754332 22334557999999999999976321 0
Q ss_pred CccccccCHHHHHHHHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCCchHHHHHHHHHhc
Q 008139 252 CKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSLAK 331 (576)
Q Consensus 252 ~~~~~~i~~~~l~~l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~glReGil~~~l~~ 331 (576)
.+++.|+.++|+++++++.+++.+ ++.+++||+++|+|+|+||++|+.++|+.+++++|+||++|||||++++++.+
T Consensus 232 -~~~~~i~~~~l~~l~~~l~~~~~~--~r~~~~gl~~~Rad~I~~g~~il~~i~~~~~~~~i~vs~~gLReGll~~~~~~ 308 (513)
T PRK10854 232 -EKDGLITPERLEMLVKEVLKHKNF--AALSLPGLSEERKTVFVPGLAILCGVFDALAIRELRLSDGALREGVLYEMEGR 308 (513)
T ss_pred -CCCCccCHHHHHHHHHHHHCCCHH--HHHhCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHhh
Confidence 113479999999999999999987 99999999999999999999999999999999999999999999999999754
Q ss_pred ccCCCCCCchhhHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHhccc-ccchhhhhhcccCcchHHHHHHHHHHhh
Q 008139 332 VFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDK-LYNNQVKLIASFEDKDLEYLEAACLLHN 410 (576)
Q Consensus 332 ~~~~~~~~~~~~~~s~~~l~~ry~~d~~~~ha~~V~~~A~~LFd~l~~~~~-l~~~~~~~~~~~~~~~r~LL~~AalLHd 410 (576)
. ...|++.+|++++++||++|. .|+++|+++|++|||+|++.|+ + +++++++||+|||+|||
T Consensus 309 ~-----~~~d~~~~s~~~la~ry~~d~--~ha~~V~~~a~~LFd~l~~~h~~~----------~~~~~~~LL~~Aa~Lhd 371 (513)
T PRK10854 309 F-----RHQDIRSRTAKSLANHYNIDR--EQARRVLETTMQLYEQWREQNPKL----------AHPQLEALLKWAAMLHE 371 (513)
T ss_pred c-----ccccHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHhhhhhhccc----------CCHHHHHHHHHHHHHHh
Confidence 2 125888999999999999987 8999999999999999999984 2 24577899999999999
Q ss_pred cccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhccCChHHHHHHHHHHHHHHHHHHhcc
Q 008139 411 IGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQ 490 (576)
Q Consensus 411 IG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~ 490 (576)
||++||+++||+||||||+|++ |+||||+|+.+||+++|||||+.|+..++.+..|+ ++.+.+|++|||||++||+
T Consensus 372 iG~~I~~~~~~~Hs~yiI~~s~-l~G~s~~E~~~iA~i~ryh~k~~p~~~~~~~~~l~---~~~~~~l~~iLRLA~~Ld~ 447 (513)
T PRK10854 372 VGLNINHSGLHRHSAYILQNTD-LPGFNQEQQLMLATLVRYHRKAIKLDDLPRFTLFK---KKQYLPLIQLLRLGVLLNN 447 (513)
T ss_pred cCCccCCCCcchhHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCChhhhhhhhccc---HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998 99999999999999999999999987777777886 3466789999999999997
Q ss_pred ccCCC--CcceEEEEeCceeEEEEeeCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCceEEEEeecCC
Q 008139 491 NDCVN--LRGVDFFHSYEGFKLVIKEARDQPYLPGSSQPTLDNIEAELEKELEHFKKIFKQELLVVGSSSS 559 (576)
Q Consensus 491 s~~~~--i~~i~~~~~~~~~~L~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~f~~~fg~~l~i~~~~~~ 559 (576)
++.++ +.+++++.+++.+.|+++.. | .++..+| .|.+++++++|+++||+++++.-.+.+
T Consensus 448 ~~~~~~~~~~v~~~~~~~~l~l~l~~~------~-~~~~~le--~~~~~~~~~~f~~vfg~~~~l~~~~~~ 509 (513)
T PRK10854 448 QRQATTTPPTLRLITDDSHWTLRFPHD------W-FSQNALV--LLDLEKEQEYWEDVTGWRLKIEEESTP 509 (513)
T ss_pred CCCCCCCCCeEEEEEcCCEEEEEECcc------c-cccCcHH--HHHHHHHHHHHHHHhCceEEEEecCch
Confidence 77554 45677766666677887554 2 1345566 599999999999999999999866544
No 3
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-93 Score=768.41 Aligned_cols=447 Identities=35% Similarity=0.516 Sum_probs=404.9
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEE
Q 008139 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (576)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (576)
+++|+||||||||||+|+++.+ |.++++++.|+.||||+|++.+|+|++++|+|+++||++|+++++.++++ ++++|
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~~-~~~~~l~~~k~~vrLgegl~~~g~L~~eai~R~~~aL~~f~e~~~~~~~~--~v~~v 79 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEITP-GSFQVLFREKRIVRLGEGLDATGNLSEEAIERALSALKRFAELLDGFGAE--EVRVV 79 (492)
T ss_pred ceEEEEEecCCeEEEEEEeccC-CccchhhhhhhheehhcCccccCCcCHHHHHHHHHHHHHHHHHHhhCCCC--EEEEe
Confidence 5799999999999999999986 88999999999999999999999999999999999999999999999985 79999
Q ss_pred eehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCeEeeEEeec
Q 008139 93 ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVN 172 (576)
Q Consensus 93 ATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~Slp 172 (576)
||+|+|+|+|+++|+.+++++||++|+||||+|||||+|+||.++++. .++++++||||||||++++++.++....|+|
T Consensus 80 ATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~-~~~~lv~DIGGGStEl~~g~~~~~~~~~Sl~ 158 (492)
T COG0248 80 ATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPR-KGDGLVIDIGGGSTELVLGDNFEIGLLISLP 158 (492)
T ss_pred hhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCC-CCCEEEEEecCCeEEEEEecCCccceeEEee
Confidence 999999999999999999999999999999999999999999999985 5679999999999999999999999999999
Q ss_pred hhHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhhhhhHHHHhcCCcEEEeehHHHHHHHHHHH--cCCCCccccCCCCC
Q 008139 173 LGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVV--SGYDRDFVDNVGDF 249 (576)
Q Consensus 173 lG~vrl~e~f~~~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~lvG~gGt~~~la~~~~--~~y~~~~~~~~~~~ 249 (576)
+||||++++|+.++ ++..+...++++++..+.+..+. +....+..+||+|||+|+++++++ ..||...+|
T Consensus 159 ~G~v~lt~~~~~~~~~s~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~vg~sGT~r~la~l~~~~~~y~~~~~~----- 231 (492)
T COG0248 159 LGCVRLTERFFPDDPISEENFAKARDAVREELEEIAKE--YRIAGWAGLVGTSGTIRALAKLHMAQGSYPLRVLH----- 231 (492)
T ss_pred cceEEeehhhcCCCCCCHHHHHHHHHHHHHHHHhhhHH--HHhhhhccEEEccHHHHHHHHHHHhcccCChhhcc-----
Confidence 99999999999874 68888999999999999875432 222345559999999999999864 457755444
Q ss_pred CCCccccccCHHHHHHHHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCCchHHHHHHHHH
Q 008139 250 GGCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSL 329 (576)
Q Consensus 250 ~~~~~~~~i~~~~l~~l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~glReGil~~~l 329 (576)
+|.||.+++.++++++..++.+ ++.+++|++++|+|+|++|++|+.++|+.+++++|+||++|||||++++++
T Consensus 232 -----~~~it~~~l~~~~~~l~~~~~~--~~~~~~gl~~~Ra~vi~~G~~il~a~~~~l~~~~~~vs~~glREG~l~~~l 304 (492)
T COG0248 232 -----GYEITAEELEKLLERLIRMTSE--ERLKLEGLSKDRADVILAGAAILEAVFEALSIERMIVSDGGLREGVLYDLL 304 (492)
T ss_pred -----CceEcHHHHHHHHHHHHhCChH--hHHhccCCChhhhHhhhhHHHHHHHHHHhcCcceEEeccccccchHHHHHh
Confidence 6899999999999999999977 999999999999999999999999999999999999999999999999998
Q ss_pred hcccCCCCCCchhhHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHh
Q 008139 330 AKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLH 409 (576)
Q Consensus 330 ~~~~~~~~~~~~~~~~s~~~l~~ry~~d~~~~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLH 409 (576)
.+... .+++.+++.+++.+|.++. .|+.+|++.|.++|+++.+.++. ..++..++ |+|||+||
T Consensus 305 ~~~~~-----~~~r~~~~~~~~~~~~~~~--~~~~~v~~~a~~l~~~~~~~~~~---------~~~~~~~~-l~~Aa~Lh 367 (492)
T COG0248 305 LRFEA-----EDIRKRSLLELALRYLIDL--AQAKRVAKLALELFDQLLALLKI---------DEEAEERL-LEAAAMLH 367 (492)
T ss_pred hhhhh-----hhhhccHHHHHHHHhhhhH--HhHhhHHHHHHHHHHHhhhcccc---------CCChHHHH-HHHHHHHH
Confidence 76532 2377789999999999987 89999999999999999987653 34556666 99999999
Q ss_pred hcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhccCChHHHHHHHHHHHHHHHHHHhc
Q 008139 410 NIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQ 489 (576)
Q Consensus 410 dIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld 489 (576)
|||++||+++||+||+|+|.|++ ++||||+|+.++|++++||+++.++.....+ ++.....+..|+++||+|..||
T Consensus 368 ~iG~~i~~~~~~~hsayiI~~s~-l~Gf~~~e~~~lA~l~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~llrla~~L~ 443 (492)
T COG0248 368 EIGLNISHSGHHKHSAYIIRNSD-LPGFSHEERLLLALLARYHRKAVKLKKLAPF---SKKKLKSVRRLLGLLRLAVILD 443 (492)
T ss_pred HhccccCcccHHHHHHHHHHcCC-CCCCCHHHHHHHHHHHHHHhcCCCccccccc---cchhHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999998 9999999999999999999998776443333 7778889999999999999999
Q ss_pred cccCCCCcc
Q 008139 490 QNDCVNLRG 498 (576)
Q Consensus 490 ~s~~~~i~~ 498 (576)
+++...+..
T Consensus 444 ~~~~~~~~~ 452 (492)
T COG0248 444 RARQGDIEP 452 (492)
T ss_pred ccccCcCCc
Confidence 999877643
No 4
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=100.00 E-value=4.1e-63 Score=510.76 Aligned_cols=296 Identities=33% Similarity=0.497 Sum_probs=269.8
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEe
Q 008139 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (576)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (576)
++|+|||||||+||+|+++. ++.++++++.+++||||++++.+|.|++++|++++++|++|++++++|+++ ++++||
T Consensus 1 ~~AvIDiGSNsirl~I~~~~-~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~~~~~v~--~i~~va 77 (300)
T TIGR03706 1 PIAAIDIGSNSVRLVIARGV-EGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELLRGFPVD--EVRAVA 77 (300)
T ss_pred CeEEEEecCCeeeEEEEEec-CCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--eEEEEE
Confidence 37999999999999999986 577999999999999999999999999999999999999999999999995 799999
Q ss_pred ehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCeEeeEEeech
Q 008139 94 TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNL 173 (576)
Q Consensus 94 TsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~Slpl 173 (576)
|+|+|+|+|+++|+++|+++||++|+||||+|||+|+|+|+.+.++.. +++++||||||||+++++++++.+++|+|+
T Consensus 78 Tsa~R~A~N~~~~~~~i~~~tgi~i~visg~eEa~l~~~gv~~~~~~~--~~~v~DiGGGSte~~~~~~~~~~~~~Sl~l 155 (300)
T TIGR03706 78 TAALRDAKNGPEFLREAEAILGLPIEVISGEEEARLIYLGVAHTLPIA--DGLVVDIGGGSTELILGKDFEPGEGVSLPL 155 (300)
T ss_pred cHHHHcCCCHHHHHHHHHHHHCCCeEEeChHHHHHHHHHHHHhCCCCC--CcEEEEecCCeEEEEEecCCCEeEEEEEcc
Confidence 999999999999999999999999999999999999999999888653 369999999999999999999999999999
Q ss_pred hHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhhhhhHHHHhcCCcEEEeehHHHHHHHHHHHc--CCCCccccCCCCCC
Q 008139 174 GHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVS--GYDRDFVDNVGDFG 250 (576)
Q Consensus 174 G~vrl~e~f~~~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~lvG~gGt~~~la~~~~~--~y~~~~~~~~~~~~ 250 (576)
|+|||+++|...+ |+..+++.+++|+.+.+... ++++..+...+||+|||+++++++... .|+..
T Consensus 156 G~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~lig~gGt~~~la~~~~~~~~~~~~--------- 223 (300)
T TIGR03706 156 GCVRLTEQFFPDGPISKKSLKQARKAAREELASL---KWLKKGGWRPLYGVGGTWRALARIHQAQHGYPLH--------- 223 (300)
T ss_pred ceEEhHHhhCCCCCCCHHHHHHHHHHHHHHHHHh---HHHhhCCCCEEEEehHHHHHHHHHHHhcccCCCc---------
Confidence 9999999998754 67788889999999998753 334444555799999999999998643 35433
Q ss_pred CCccccccCHHHHHHHHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCCchHHHHHHHHH
Q 008139 251 GCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSL 329 (576)
Q Consensus 251 ~~~~~~~i~~~~l~~l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~glReGil~~~l 329 (576)
..|++.+++++|++++++|..++.+ ++.+++|++++|+|+|+||++|+.++|+.+++++|+||++|||||++++++
T Consensus 224 -~~~~~~l~~~~~~~~~~~l~~~~~~--~r~~~~gl~~~Rad~i~~g~~i~~~l~~~~~~~~i~vs~~glreGl~~~~~ 299 (300)
T TIGR03706 224 -GLHGYTITAEGLLELLEELIKLSRE--ERLKLPGLSKDRADILPGGAAVLEELFRALGIEQMVFSRGGLREGVLYELL 299 (300)
T ss_pred -CccCCEECHHHHHHHHHHHHcCCHH--HHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEECCchHHHHHHHhhc
Confidence 3456789999999999999999988 999999999999999999999999999999999999999999999998865
No 5
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=100.00 E-value=2e-56 Score=458.55 Aligned_cols=282 Identities=34% Similarity=0.579 Sum_probs=247.2
Q ss_pred EEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHH
Q 008139 28 LIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFV 107 (576)
Q Consensus 28 ~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl 107 (576)
+|++++ +|.++++++.+++||||++++.+|.|++++|++++++|++|++++++|+|+ +|+||||||+|+|+|+++|+
T Consensus 1 ~I~~~~-~~~~~~l~~~~~~vrLg~~~~~~g~i~~e~i~r~~~~L~~f~~~~~~~~v~--~i~~vATsA~R~A~N~~~~~ 77 (285)
T PF02541_consen 1 VIAEVK-DGKFKILEEEKEIVRLGEGVFETGRISEEAIERAIDALKRFKEILKDYGVE--KIRAVATSALREAKNSDEFL 77 (285)
T ss_dssp EEEEEE-TTEEEEEEEEEEE--TTTTHHHHSSB-HHHHHHHHHHHHHHHHHHHHTTGS--EEEEEEEHHHHHSTTHHHHH
T ss_pred CEEEeC-CCCeEEeeeceEEEEcccccccCCCcCHHHHHHHHHHHHHHHHHHHHCCCC--EEEEEhhHHHHhCcCHHHHH
Confidence 689997 567999999999999999999999999999999999999999999999995 89999999999999999999
Q ss_pred HHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCeEeeEEeechhHHHHHHhhcCCC-
Q 008139 108 ECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCS- 186 (576)
Q Consensus 108 ~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~~~~- 186 (576)
++|+++||++|+||||+|||+|+|+|+.+.+ .+.++++++||||||||+++++++++.++.|+|+|+|++++.|...+
T Consensus 78 ~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l-~~~~~~lviDIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~~~~~~~ 156 (285)
T PF02541_consen 78 DRIKKETGIDIEIISGEEEARLSFLGVLSSL-PPDKNGLVIDIGGGSTELILFENGKVVFSQSLPLGAVRLTERFFKSDP 156 (285)
T ss_dssp HHHHHHHSS-EEEE-HHHHHHHHHHHHHHHS-TTTSSEEEEEEESSEEEEEEEETTEEEEEEEES--HHHHHHHHSGCSS
T ss_pred HHHHHHhCCceEEecHHHHHHHHHHHHHhhc-cccCCEEEEEECCCceEEEEEECCeeeEeeeeehHHHHHHHHHhccCc
Confidence 9999999999999999999999999999998 34567999999999999999999999999999999999999998765
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhHHHHhcC-CcEEEeehHHHHHHHHHHHcCCCCccccCCCCCCCCccccccCHHHHHH
Q 008139 187 GNFEEVLKMREYVRMVILEFGLVEKVKESG-FEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGDFGGCKRDWRLSRGELKG 265 (576)
Q Consensus 187 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~lvG~gGt~~~la~~~~~~y~~~~~~~~~~~~~~~~~~~i~~~~l~~ 265 (576)
++..+...+++|+.+.+....+. +...+ ...++|++|+.++++.... .++. .++.|+.++|++
T Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~-------------~~~~i~~~~l~~ 220 (285)
T PF02541_consen 157 PTAEELEKLREFIRKELEELKWE--FPKGGGTIRIIGTSGTIRALYPLKK-IHGK-------------EGYEITREDLEE 220 (285)
T ss_dssp -HHHHHHHHHHHHHHHHCTTHHH--HHHHCHHCEEECCCHHHHHHHHHHH-HTTC-------------SSCEEEHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH--hhhcCCceeeecHHHHHHHHHHHHH-hcCC-------------CCceECHHHHHH
Confidence 46667788999999999875432 22223 5678999999999887642 1110 047899999999
Q ss_pred HHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCCchHHHHHHHHHhc
Q 008139 266 IVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSLAK 331 (576)
Q Consensus 266 l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~glReGil~~~l~~ 331 (576)
+++++..++.+ ++.+++||+++|+|+|+||++|+.++|+.+++++++||+.|||||++++++.+
T Consensus 221 ~~~~l~~~~~e--e~~~~~gl~~~Ra~~i~~g~~i~~~l~~~~~~~~i~vs~~glreG~l~~~l~~ 284 (285)
T PF02541_consen 221 LLEKLSKMSPE--ERAKIPGLSPDRADIILPGALILKALLEAFGAEEIIVSDYGLREGLLYDMLLK 284 (285)
T ss_dssp HHHHHHTSSHH--HHHTSTTSHHCHHTTHHHHHHHHHHHHHHHTHSEEEEESEEHHHHHHHHHHHH
T ss_pred HHHHHHcCChH--HHHHccCCCHHHHHhHHHHHHHHHHHHHHcCCCEEEECCCchHHHHHHHHhcc
Confidence 99999999988 99999999999999999999999999999999999999999999999998864
No 6
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.66 E-value=6.3e-15 Score=149.79 Aligned_cols=155 Identities=23% Similarity=0.269 Sum_probs=122.7
Q ss_pred ccccccCCCceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHC-
Q 008139 4 NTSYMQIPQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSH- 82 (576)
Q Consensus 4 ~~~~~~~~~~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~- 82 (576)
+|+-..-+.+++++|||||||+|++|++... +.+...+..+..+|+|. +.+ ++++.++|+.|.+.++.+
T Consensus 15 ~~~~~~~~~~~~~~iDiGSssi~~vv~~~~~-~~~~~~~~~~~~vr~G~-i~d--------i~~a~~~i~~~~~~ae~~~ 84 (267)
T PRK15080 15 NKTPVATESPLKVGVDLGTANIVLAVLDEDG-QPVAGALEWADVVRDGI-VVD--------FIGAVTIVRRLKATLEEKL 84 (267)
T ss_pred cCCCCCCCCCEEEEEEccCceEEEEEEcCCC-CEEEEEeccccccCCCE-Eee--------HHHHHHHHHHHHHHHHHHh
Confidence 4444344567899999999999999997643 35778888888999988 333 999999999999999877
Q ss_pred CCCcccEEEEeehhhhhcC---ChHHHHHHHHHHcCCcEE-EeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEE
Q 008139 83 NISRDHTRAVATAAVRAAE---NKDEFVECVREKVGFEVD-VLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (576)
Q Consensus 83 ~v~~~~i~~vATsAvR~A~---N~~~fl~~i~~~tG~~i~-vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~ 158 (576)
|++ +..|+| +++.+. |+..+. ++.++.|+++. ++++. .|--.+++ .. ..+++|||||+|+++
T Consensus 85 g~~---i~~v~~-~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~-~A~a~~~~------~~--~~~vvDIGggtt~i~ 150 (267)
T PRK15080 85 GRE---LTHAAT-AIPPGTSEGDPRAII-NVVESAGLEVTHVLDEP-TAAAAVLG------ID--NGAVVDIGGGTTGIS 150 (267)
T ss_pred CCC---cCeEEE-EeCCCCCchhHHHHH-HHHHHcCCceEEEechH-HHHHHHhC------CC--CcEEEEeCCCcEEEE
Confidence 774 566777 788887 888877 66778899999 56644 44332221 11 269999999999999
Q ss_pred EeeCCeEeeEEeechhHHHHHHhh
Q 008139 159 IGKRGKVVFCESVNLGHVSLSEKF 182 (576)
Q Consensus 159 ~~~~~~~~~~~SlplG~vrl~e~f 182 (576)
++.+|++.+..++|+|.-.+++..
T Consensus 151 v~~~g~~~~~~~~~~GG~~it~~I 174 (267)
T PRK15080 151 ILKDGKVVYSADEPTGGTHMSLVL 174 (267)
T ss_pred EEECCeEEEEecccCchHHHHHHH
Confidence 999999999999999999999865
No 7
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=98.86 E-value=1.7e-08 Score=109.98 Aligned_cols=148 Identities=26% Similarity=0.326 Sum_probs=88.4
Q ss_pred eEEEEEecccceEEEEEEEeC--CCCEEEEEeeee--e--eeeccCCCcCCCCCHHHHHHHHHHHHHHHH-HHHHCCCCc
Q 008139 14 LFASIDMGTSSFKLLIIRAYP--NGKFLTIDTLKQ--P--VILGRDLSSSCSISTQSQARSVESLLMFRD-IIQSHNISR 86 (576)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~--~~~~~~l~~~k~--~--vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~-~~~~~~v~~ 86 (576)
...|||.||.+.|+-||+... .....++...+. . ....-|+..- .-.++.+...+.-|-.++. .+..-..+.
T Consensus 9 y~vviDAGSsgsR~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~pgls~~-~~~~~~~~~~l~~ll~~a~~~ip~~~~~~ 87 (434)
T PF01150_consen 9 YGVVIDAGSSGSRVHVYKWRCRDNNSLPVVPLVEQSKPVFKKVEPGLSSF-ADNPEKAAESLQPLLDFAKSVIPKSQHSS 87 (434)
T ss_dssp EEEEEEEESSEEEEEEEEEEEEECCGCEEEEEEEEBEEHCCHHCCHHHHH-TTTTHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred EEEEEEcCCCCceEEEEEEecCCCccCCccccceeccchhhcccchHHHh-CCChHHHHHHHHHHHHHHHhhCCHHHhCC
Confidence 468999999999999999964 122333222222 0 1111121110 1123445555555444432 222222222
Q ss_pred ccEEEEeehhhhh--cCChHHHHHHHHHH----cCCc-----EEEeChHHHHHHHHhhhhccCC---CC------CCceE
Q 008139 87 DHTRAVATAAVRA--AENKDEFVECVREK----VGFE-----VDVLTGEQEAKFVYMGVLQFLP---VF------DRLVL 146 (576)
Q Consensus 87 ~~i~~vATsAvR~--A~N~~~fl~~i~~~----tG~~-----i~vIsg~eEA~l~~~gv~~~l~---~~------~~~~l 146 (576)
..|.+.||+.||. ..+++.+++.+++. +++. ++||||+||+.|.|++|-.-+. .. ....-
T Consensus 88 tpi~l~ATAGmRlL~~~~~~~il~~~~~~l~~~~~f~~~~~~v~visG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~t~g 167 (434)
T PF01150_consen 88 TPIYLGATAGMRLLPEEQQEAILDEVRNYLRSSSPFPFRDSWVRVISGEEEGIYGWVTVNYLLGRLDSSGASKSPSNTVG 167 (434)
T ss_dssp EEEEEEE-HHHHTHHHHHHHHHHHHHHHCHHCHCTSSEEETTCEE--HHHHHHHHHHHHHHHTTTSSSSTEEEEESS-EE
T ss_pred eeEEEecccccEECChhhHHHHHHHHHHhhccCCCCccCccceEecCHHHhhHhHHHHHHHHhCccccccccCCCCceEE
Confidence 4689999999996 45778888888863 4543 7999999999999999865332 12 24468
Q ss_pred EEEeCCCceeEEEeeC
Q 008139 147 SVDIGGGSTEFVIGKR 162 (576)
Q Consensus 147 viDIGGGStEl~~~~~ 162 (576)
++|+|||||+|+..-+
T Consensus 168 ~lDlGGaStQIaf~~~ 183 (434)
T PF01150_consen 168 ALDLGGASTQIAFEPS 183 (434)
T ss_dssp EEEE-SSEEEEEEEET
T ss_pred EEecCCcceeeeeccC
Confidence 9999999999997655
No 8
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=98.68 E-value=1.4e-06 Score=87.30 Aligned_cols=147 Identities=21% Similarity=0.289 Sum_probs=91.2
Q ss_pred EEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCcccEEEEeehh
Q 008139 18 IDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQS-HNISRDHTRAVATAA 96 (576)
Q Consensus 18 IDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~-~~v~~~~i~~vATsA 96 (576)
|||||+||++++.+.. ++.+-.. .+=.+...+|.|.+ ++.+-..|+.+++.++. .+.+..+ .+++..+
T Consensus 2 ~dig~~~ik~v~~~~~-~~~~~~~-------~~~~~~~~~g~I~d--~~~~~~~l~~l~~~a~~~~g~~~~~-vvisVP~ 70 (239)
T TIGR02529 2 VDLGTANIVIVVLDED-GQPVAGV-------MQFADVVRDGIVVD--FLGAVEIVRRLKDTLEQKLGIELTH-AATAIPP 70 (239)
T ss_pred CCcccceEEEEEEecC-CCEEEEE-------ecccccccCCeEEE--hHHHHHHHHHHHHHHHHHhCCCcCc-EEEEECC
Confidence 7999999999998765 3422111 12223334455543 34444555555555432 3443212 3344443
Q ss_pred hhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCeEeeEEeechhHH
Q 008139 97 VRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHV 176 (576)
Q Consensus 97 vR~A~N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~v 176 (576)
-=...+++.+.+.+ +..|+++..+.-+-=|-..+++ + . ..+++|||||+|.++++++|++.++.++|+|.-
T Consensus 71 ~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~~~~----~--~--~~~vvDiGggtt~i~i~~~G~i~~~~~~~~GG~ 141 (239)
T TIGR02529 71 GTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAAVLQ----I--K--NGAVVDVGGGTTGISILKKGKVIYSADEPTGGT 141 (239)
T ss_pred CCCcccHHHHHHHH-HHcCCceEEEeehHHHHHHHhc----C--C--CcEEEEeCCCcEEEEEEECCeEEEEEeeecchH
Confidence 33344555555444 4569998766555444333222 1 1 259999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 008139 177 SLSEKFGT 184 (576)
Q Consensus 177 rl~e~f~~ 184 (576)
.+++.+..
T Consensus 142 ~it~~Ia~ 149 (239)
T TIGR02529 142 HMSLVLAG 149 (239)
T ss_pred HHHHHHHH
Confidence 99987643
No 9
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=98.35 E-value=2.3e-06 Score=90.95 Aligned_cols=147 Identities=20% Similarity=0.281 Sum_probs=94.4
Q ss_pred ceEEEEEecccceEEEEEEEeC-CCC--EEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHH---HHCCCCc
Q 008139 13 TLFASIDMGTSSFKLLIIRAYP-NGK--FLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDII---QSHNISR 86 (576)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~-~~~--~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~---~~~~v~~ 86 (576)
+.=.|||-||...||-|+.... .|. +.++...-..-.++-|+..-+. .|+.....+.-|-+|++-- +.++-
T Consensus 9 kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~-nP~~a~~~l~pLlefA~~~IPk~~h~~-- 85 (501)
T KOG1386|consen 9 KYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFAD-NPEGASVYLTPLLEFAKEHIPKEKHKE-- 85 (501)
T ss_pred eEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhcc-ChhhhHHHHHHHHHHHHhhCCHhhcCC--
Confidence 3347899999999999998764 333 2222211111234444433222 3555556666666665421 12222
Q ss_pred ccEEEEeehhhhhc--CChHHHHHHHHHHc----CCc-----EEEeChHHHHHHHHhhhhccCC---C------CCCceE
Q 008139 87 DHTRAVATAAVRAA--ENKDEFVECVREKV----GFE-----VDVLTGEQEAKFVYMGVLQFLP---V------FDRLVL 146 (576)
Q Consensus 87 ~~i~~vATsAvR~A--~N~~~fl~~i~~~t----G~~-----i~vIsg~eEA~l~~~gv~~~l~---~------~~~~~l 146 (576)
..++..||+.||-- .+.+.+++-+...+ ++. ++||||+||+.|+|.++-..+. . .....-
T Consensus 86 Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~NY~LG~f~~~~~~~~~~~T~G 165 (501)
T KOG1386|consen 86 TPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAANYLLGRFGKKNRWDSRKETFG 165 (501)
T ss_pred CCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHHHHHHHHhccccCcccCCcceee
Confidence 35899999999975 56777777665543 332 7899999999999999864321 1 234577
Q ss_pred EEEeCCCceeEEEeeC
Q 008139 147 SVDIGGGSTEFVIGKR 162 (576)
Q Consensus 147 viDIGGGStEl~~~~~ 162 (576)
++|+||.||+|+..-.
T Consensus 166 ~lDlGGAS~QItFe~~ 181 (501)
T KOG1386|consen 166 ALDLGGASTQITFEPP 181 (501)
T ss_pred eEecCCceeEEEEecC
Confidence 9999999999998654
No 10
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.35 E-value=1.8e-05 Score=85.93 Aligned_cols=167 Identities=15% Similarity=0.215 Sum_probs=95.8
Q ss_pred CCCceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCccc
Q 008139 10 IPQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQS-HNISRDH 88 (576)
Q Consensus 10 ~~~~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~-~~v~~~~ 88 (576)
|+.+++++|||||.+++++|++..+++.++++.....+ ..|+. +|.|.+ ++.+.++++.-.+.++. .|++..+
T Consensus 5 ~~~~~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~---s~gi~-~G~I~d--~~~~~~aI~~av~~ae~~~g~~i~~ 78 (420)
T PRK09472 5 TDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCP---SRGMD-KGGVND--LESVVKCVQRAIDQAELMADCQISS 78 (420)
T ss_pred cCCCEEEEEEcccceEEEEEEEEcCCCCEEEEEEEEcc---CCCcc-CCEEEc--HHHHHHHHHHHHHHHHHHhCCcccE
Confidence 56678999999999999999998767778888766655 34543 466654 33344444443333322 1322222
Q ss_pred E-EEEeehhhhhc------------CChHHHHHHHHHH---------------------------------cC----CcE
Q 008139 89 T-RAVATAAVRAA------------ENKDEFVECVREK---------------------------------VG----FEV 118 (576)
Q Consensus 89 i-~~vATsAvR~A------------~N~~~fl~~i~~~---------------------------------tG----~~i 118 (576)
+ .+++...++-- -..+++-+.++.. .| .++
T Consensus 79 v~v~i~g~~v~~~~~~~~~~~~~~~I~~~dv~~~~~~a~~~~~~~~~~i~~~~p~~~~vD~~~~v~~P~g~~g~~l~~~v 158 (420)
T PRK09472 79 VYLALSGKHISCQNEIGMVPISEEEVTQEDVENVVHTAKSVRVRDEHRILHVIPQEYAIDYQEGIKNPVGLSGVRMQAKV 158 (420)
T ss_pred EEEEecCcceEEEeeeEEEEcCCCeeCHHHHHHHHHHhhccCCCCCCEEEEEeceeEEECCCCCcCCCCCCcccEEEEEE
Confidence 2 22222111100 0111111111100 01 123
Q ss_pred EEeChHHHHHHHHhhhhc--c-----------------C-CC-CCCceEEEEeCCCceeEEEeeCCeEeeEEeechhHHH
Q 008139 119 DVLTGEQEAKFVYMGVLQ--F-----------------L-PV-FDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVS 177 (576)
Q Consensus 119 ~vIsg~eEA~l~~~gv~~--~-----------------l-~~-~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vr 177 (576)
.++.+..+.-..+..+.. + + +. .+...+++|||||+|+++++++|.+.++.++|+|.-.
T Consensus 159 ~lv~~~~~~~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~~~~i~~GG~~ 238 (420)
T PRK09472 159 HLITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNV 238 (420)
T ss_pred EEEEEchHHHHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEEEeeeechHHH
Confidence 345555444443333321 0 1 11 1234899999999999999999999999999999988
Q ss_pred HHHhh
Q 008139 178 LSEKF 182 (576)
Q Consensus 178 l~e~f 182 (576)
+++..
T Consensus 239 it~dI 243 (420)
T PRK09472 239 VTSDI 243 (420)
T ss_pred HHHHH
Confidence 88765
No 11
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=98.33 E-value=1.4e-06 Score=90.68 Aligned_cols=147 Identities=20% Similarity=0.209 Sum_probs=91.8
Q ss_pred ceEEEEEecccceEEEEEEEeCC--CC-EEEEEeeeeeeeeccCCCcCC-CCCHHHHHHHHHHHHHHHHHHHHCCCCccc
Q 008139 13 TLFASIDMGTSSFKLLIIRAYPN--GK-FLTIDTLKQPVILGRDLSSSC-SISTQSQARSVESLLMFRDIIQSHNISRDH 88 (576)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~--~~-~~~l~~~k~~vrLg~~~~~~g-~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~ 88 (576)
+...+||-||.+.|+.||..+.. +. +..-++.-..+.-|-..+.+. .=..+.++-+++.-+.|.=. +.+..+ .
T Consensus 67 ~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfaddp~~aA~Sl~~LLd~A~~~vP~-~~~~kT--P 143 (453)
T KOG1385|consen 67 QYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFADDPEEAANSLRPLLDVAEAFVPR-EHWKKT--P 143 (453)
T ss_pred EEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccCCChHHHHHhHHHHHHHHHhhCCH-hHhccC--c
Confidence 46689999999999999998743 22 222222222222232222221 11123333333333333211 122343 5
Q ss_pred EEEEeehhhhhc--CChHHHHHHHHHHcC---------CcEEEeChHHHHHHHHhhhhccC---CCC-CCceEEEEeCCC
Q 008139 89 TRAVATAAVRAA--ENKDEFVECVREKVG---------FEVDVLTGEQEAKFVYMGVLQFL---PVF-DRLVLSVDIGGG 153 (576)
Q Consensus 89 i~~vATsAvR~A--~N~~~fl~~i~~~tG---------~~i~vIsg~eEA~l~~~gv~~~l---~~~-~~~~lviDIGGG 153 (576)
|.+-||+.+|-- .-++.+++.|++.+- =.|.|++|.+|+-|.|..+.-.+ .-+ ....-++|+|||
T Consensus 144 i~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGGG 223 (453)
T KOG1385|consen 144 IVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDGTDEGVYAWITINYLLGTLGAPGHRTVGVVDLGGG 223 (453)
T ss_pred eEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccCcccceeeeeehhhhhcccCCCCCCceEEEEcCCc
Confidence 889999999974 456788998888763 23889999999999998876432 221 345789999999
Q ss_pred ceeEEEeeC
Q 008139 154 STEFVIGKR 162 (576)
Q Consensus 154 StEl~~~~~ 162 (576)
||++++.-.
T Consensus 224 STQi~f~p~ 232 (453)
T KOG1385|consen 224 STQITFLPT 232 (453)
T ss_pred eEEEEEecC
Confidence 999998653
No 12
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=98.24 E-value=1.8e-07 Score=82.18 Aligned_cols=106 Identities=23% Similarity=0.315 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCC-------------CchhhhHHH
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK-------------GYHKQSCHI 427 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~~-------------~h~~Hs~yi 427 (576)
+|+..|+.+|..+++.+.. +.++.++.+||+|||||+...+. .|...|+++
T Consensus 3 ~Hs~~V~~~a~~l~~~~~~----------------~~~~~~l~~aaLlHDiGk~~~~~~~~~~~~~~~~~~~H~~~g~~~ 66 (122)
T PF01966_consen 3 EHSLRVAELAERLADRLGL----------------EEDRELLRIAALLHDIGKIPTPDFIEKKPEERGKFYRHEEIGAEI 66 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTH----------------HHHHHHHHHHHHHTTTTHHSTHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCC----------------chhHHHHHHHHHHHhcCCCCCchHHHHhHhhhchhhhhHHHHHHH
Confidence 6999999999999887753 13468999999999999999774 688899999
Q ss_pred HHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhccCChHHHHHHHHHHHHHHHHHHhcc
Q 008139 428 IMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQ 490 (576)
Q Consensus 428 I~ns~~l~G~s~~E~~~iA~i~ryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~ 490 (576)
+.+.....|+. ...++.++++|........... .........++.++++|+.||.
T Consensus 67 ~~~~~~~~~~~---~~~i~~~i~~H~~~~~~~~~~~-----~~~~~~~~~~~~iv~~aD~l~a 121 (122)
T PF01966_consen 67 LKEFLKELGLP---IEIIANAIRYHHGPWNGEGKPK-----EEDYEPISLEARIVKLADRLDA 121 (122)
T ss_dssp HHHHHHHHCHC---HHHHHHHHHHTTTHHTSHHCHH-----CHSCSTSSHHHHHHHHHHHHHH
T ss_pred HHHhhhhcchH---HHHHHHHHHHhccccccccccc-----ccCCCCCCHHHHHHHHHHHHhC
Confidence 98875223333 6788999999976654211111 1111233456889999999873
No 13
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.04 E-value=0.00022 Score=76.19 Aligned_cols=161 Identities=16% Similarity=0.269 Sum_probs=93.2
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCcccEEEEe
Q 008139 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQ-SHNISRDHTRAVA 93 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~-~~~v~~~~i~~vA 93 (576)
+++|||||.++++++.+...++.++++.....+.+ ++ .+|.|-+ ++.+.+++++..+.++ ..+++..++ ++|
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~---gi-~~G~I~d--~~~~~~~i~~al~~~e~~~~~~i~~v-~~~ 74 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSR---GI-KKGVIND--IEAAVGSIQRAIEAAELMAGCEIRSV-IVS 74 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCC---Cc-cCcEEEc--HHHHHHHHHHHHHHHHHHhCCcccEE-EEE
Confidence 68999999999999999875566888766555533 43 3466554 3344455554444332 134432222 222
Q ss_pred e--hhhhhc------------CChHHHHHHHHHHc-------------------------------------CCcEEEeC
Q 008139 94 T--AAVRAA------------ENKDEFVECVREKV-------------------------------------GFEVDVLT 122 (576)
Q Consensus 94 T--sAvR~A------------~N~~~fl~~i~~~t-------------------------------------G~~i~vIs 122 (576)
. ..++-- -+.+++-+.++.+. ..++.++.
T Consensus 75 v~g~~v~~~~~~~~i~~~~~~i~~~di~~~~~~~~~~~~~~~~~il~~~~~~~~vD~~~~~~~p~g~~~~~l~~~v~lva 154 (371)
T TIGR01174 75 ISGAHIKSQNSIGVVAIKDKEVTQEDIERVLETAKAVAIPNDQEILHVIPQEYILDDQEGIKNPLGMSGVRLEVEVHIIT 154 (371)
T ss_pred EcccceEEEeeeEEEEcCCCeeCHHHHHHHHHHhhcccCCCCCEEEEEeceeEEECCCCCcCCCCCCeeeEEEEEEEEEE
Confidence 1 111110 22333333333211 11233444
Q ss_pred hHHHHHHHHhhhhcc-------------------C-C-CCCCceEEEEeCCCceeEEEeeCCeEeeEEeechhHHHHHHh
Q 008139 123 GEQEAKFVYMGVLQF-------------------L-P-VFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEK 181 (576)
Q Consensus 123 g~eEA~l~~~gv~~~-------------------l-~-~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~ 181 (576)
+..+.-..+.-+... + + ..+...+++|||||+|.++++.+|.+.+..++|+|.-.+++.
T Consensus 155 ~~~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~~~~i~~GG~~it~~ 234 (371)
T TIGR01174 155 GSSTILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRYTKVIPIGGNHITKD 234 (371)
T ss_pred EEHHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEEEeeecchHHHHHHH
Confidence 444444443333210 1 1 112357999999999999999999999999999999888875
Q ss_pred h
Q 008139 182 F 182 (576)
Q Consensus 182 f 182 (576)
.
T Consensus 235 i 235 (371)
T TIGR01174 235 I 235 (371)
T ss_pred H
Confidence 4
No 14
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.01 E-value=0.0014 Score=69.18 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=36.1
Q ss_pred eEEEEeCCCceeEEEeeCCeEeeEEeechhHHHHHHhh
Q 008139 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (576)
Q Consensus 145 ~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f 182 (576)
.+++|||+++|.++++++|++.+..++|+|.-.+++..
T Consensus 190 ~~lvdiG~~~t~l~i~~~g~~~~~r~i~~G~~~i~~~i 227 (348)
T TIGR01175 190 AALVDIGATSSTLNLLHPGRMLFTREVPFGTRQLTSEL 227 (348)
T ss_pred EEEEEECCCcEEEEEEECCeEEEEEEeechHHHHHHHH
Confidence 89999999999999999999999999999999988765
No 15
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=97.80 E-value=0.0012 Score=70.81 Aligned_cols=40 Identities=28% Similarity=0.501 Sum_probs=37.2
Q ss_pred ceEEEEeCCCceeEEEeeCCeEeeEEeechhHHHHHHhhc
Q 008139 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFG 183 (576)
Q Consensus 144 ~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~ 183 (576)
..+++|||||+|.++++.+|.+.++.++|+|.-.+|+..-
T Consensus 204 Gv~lIDiG~GTTdIai~~~G~l~~~~~ipvgG~~vT~DIa 243 (418)
T COG0849 204 GVALIDIGGGTTDIAIYKNGALRYTGVIPVGGDHVTKDIA 243 (418)
T ss_pred CeEEEEeCCCcEEEEEEECCEEEEEeeEeeCccHHHHHHH
Confidence 4799999999999999999999999999999999998653
No 16
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=97.76 E-value=6.4e-05 Score=66.77 Aligned_cols=112 Identities=21% Similarity=0.152 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhccccc-----------CCCCchhhhHHHHH
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFT-----------SKKGYHKQSCHIIM 429 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I-----------~~~~h~~Hs~yiI~ 429 (576)
.|+..|+.+|..+++.... +..++..+.+||+|||+|... ....|.++|+.++.
T Consensus 5 ~Hs~~v~~~~~~~~~~~~~---------------~~~~~~~l~~aaLlHDig~~~~~~~~~~~~~~~~~~h~~~g~~~~~ 69 (145)
T cd00077 5 EHSLRVAQLARRLAEELGL---------------SEEDIELLRLAALLHDIGKPGTPDAITEEESELEKDHAIVGAEILR 69 (145)
T ss_pred HHHHHHHHHHHHHHHHhCc---------------CHHHHHHHHHHHHHHhcCCccCccccCHHHHHHHHhhHHHHHHHHH
Confidence 6999999999988766532 113457899999999999986 46788899999987
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhccCChHHHHHHHHHHHHHHHHHHhccccC
Q 008139 430 NGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDC 493 (576)
Q Consensus 430 ns~~l~G~s~~E~~~iA~i~ryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~~ 493 (576)
+-. ..+..+....++..+..+|....+........ .-.....++.++++|+.++....
T Consensus 70 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~AD~~~~~~~ 127 (145)
T cd00077 70 ELL-LEEVIKLIDELILAVDASHHERLDGLGYPDGL-----KGEEITLEARIVKLADRLDALRR 127 (145)
T ss_pred Hhh-hcccccccHHHHHHHHHHcccCCCCCCCCCCC-----CcccCCHHHHHHHHHHHHHHHhc
Confidence 643 34444445555555554554443332111110 11233457889999999886654
No 17
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=97.75 E-value=7.4e-05 Score=64.87 Aligned_cols=101 Identities=20% Similarity=0.180 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCC----------CCchhhhHHHHHc
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK----------KGYHKQSCHIIMN 430 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~----------~~h~~Hs~yiI~n 430 (576)
.|+..|+.++..+.+++.. .++..+.+||+|||+|..... ..|..++++++.+
T Consensus 7 ~H~~~v~~~~~~l~~~~~~-----------------~~~~~~~~a~LlHDig~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 69 (124)
T smart00471 7 EHSLRVAQLAAALAEELGL-----------------LDIELLLLAALLHDIGKPGTPDSFLVKTSVLEDHHFIGAEILLE 69 (124)
T ss_pred HHHHHHHHHHHHHHHHcCh-----------------HHHHHHHHHHHHHcccCccCCHHHhcCccHHHHhHHHHHHHHHh
Confidence 6999999999988766542 123578999999999999975 7899999999977
Q ss_pred CCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhccCChHHHHHHHHHHHHHHHHHHhccccC
Q 008139 431 GDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDC 493 (576)
Q Consensus 431 s~~l~G~s~~E~~~iA~i~ryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~~ 493 (576)
.++++........+++||....... .. .....++.++++|+.++..+.
T Consensus 70 ----~~~~~~~~~~~~~~i~~h~~~~~~~--------~~---~~~~~~~~il~~aD~~~~~~~ 117 (124)
T smart00471 70 ----EEEPRILEEILATAILSHHERPDGL--------RG---EPITLEARIVKVADRLDALRR 117 (124)
T ss_pred ----CCCCHHHHHHHhhHHHHhccccCCC--------CC---CcCCHHHHHHHHHHHHHHHhc
Confidence 4678888887777888887654420 00 112346888999999887654
No 18
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=97.53 E-value=0.00039 Score=65.58 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=70.9
Q ss_pred HHHHHhCCccc-chhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCC-CCchhhhHH
Q 008139 349 RLAMRFNNKKR-VKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK-KGYHKQSCH 426 (576)
Q Consensus 349 ~l~~ry~~d~~-~~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~-~~h~~Hs~y 426 (576)
.|.++|..+.. ..|+.+|+.+|..|-..+.. .+. +.+..++.+||+|||||+...+ ..|..-++.
T Consensus 3 ~ll~~~~~~~~~~~Hs~~Va~~A~~ia~~~~~-~~~------------~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~~ 69 (164)
T TIGR00295 3 RLLDKYKCDESVRRHCLAVARVAMELAENIRK-KGH------------EVDMDLVLKGALLHDIGRARTHGFEHFVKGAE 69 (164)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHhcc-ccc------------cCCHHHHHHHHHHhcCCcccCCCCCHHHHHHH
Confidence 45555655432 26999999999987655431 111 1245789999999999998765 468888999
Q ss_pred HHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhccCChHHHHHHHHHHHHHHHHHHhcc
Q 008139 427 IIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQ 490 (576)
Q Consensus 427 iI~ns~~l~G~s~~E~~~iA~i~ryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~ 490 (576)
++.+. ||+.. ++..+.++++...|......+ .+++.+.......+.|+.+||.|..
T Consensus 70 iL~~~----g~~~~---i~~iI~~H~~~g~p~~~~~~~-~l~~~~~~p~t~ea~IV~~AD~l~~ 125 (164)
T TIGR00295 70 ILRKE----GVDEK---IVRIAERHFGAGINAEEASKL-GLPPKDYMPETLEEKIVAHADNLIM 125 (164)
T ss_pred HHHHc----CCCHH---HHHHHHHHhCCCCchhhHhhc-CCCcccCCCCCHHHHHHHHHHHhcc
Confidence 88754 45532 222233444444442111001 1222211112245779999999964
No 19
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=97.46 E-value=0.0028 Score=66.28 Aligned_cols=118 Identities=19% Similarity=0.241 Sum_probs=70.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCcccEEEEeehhhhhcCChHHHHHHHHHHcC-CcEEEeChHHHHHHHHhh
Q 008139 56 SSCSISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVG-FEVDVLTGEQEAKFVYMG 133 (576)
Q Consensus 56 ~~g~Ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG-~~i~vIsg~eEA~l~~~g 133 (576)
.+|.|++ .+.+-.-|+.|-+.+... ....-+ .+++.-+==....+..+.+.++. .| -+|.+|+.. ....+|
T Consensus 64 ~~GvI~D--~~~~~~~l~~~l~k~~~~~~~~~p~-vvi~vP~~~T~verrA~~~a~~~-aGa~~V~li~ep---~AaAiG 136 (326)
T PF06723_consen 64 KDGVIAD--YEAAEEMLRYFLKKALGRRSFFRPR-VVICVPSGITEVERRALIDAARQ-AGARKVYLIEEP---IAAAIG 136 (326)
T ss_dssp ETTEESS--HHHHHHHHHHHHHHHHTSS-SS--E-EEEEE-SS--HHHHHHHHHHHHH-TT-SEEEEEEHH---HHHHHH
T ss_pred cCCcccC--HHHHHHHHHHHHHHhccCCCCCCCe-EEEEeCCCCCHHHHHHHHHHHHH-cCCCEEEEecch---HHHHhc
Confidence 3466653 344556677777766653 222112 23333322223456678888765 55 568888755 444445
Q ss_pred hhccCCCCCCceEEEEeCCCceeEEEeeCCeEeeEEeechhHHHHHHh
Q 008139 134 VLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEK 181 (576)
Q Consensus 134 v~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~ 181 (576)
+--.... ....+++|||||+||+++..-|.++.+.|+++|.-.+.+.
T Consensus 137 aGl~i~~-~~g~miVDIG~GtTdiavislggiv~s~si~~gG~~~Dea 183 (326)
T PF06723_consen 137 AGLDIFE-PRGSMIVDIGGGTTDIAVISLGGIVASRSIRIGGDDIDEA 183 (326)
T ss_dssp TT--TTS-SS-EEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHH
T ss_pred CCCCCCC-CCceEEEEECCCeEEEEEEECCCEEEEEEEEecCcchhHH
Confidence 4322221 2346999999999999999999999999999999877653
No 20
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.26 E-value=0.0062 Score=65.70 Aligned_cols=152 Identities=22% Similarity=0.276 Sum_probs=98.9
Q ss_pred EEEEEecccceEEEEEEEeC---CC-----CEEEEEeeeeeeeeccC----CCcCCCCCHHHHHHHHHHHHHHHHHHHHC
Q 008139 15 FASIDMGTSSFKLLIIRAYP---NG-----KFLTIDTLKQPVILGRD----LSSSCSISTQSQARSVESLLMFRDIIQSH 82 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~---~~-----~~~~l~~~k~~vrLg~~----~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~ 82 (576)
-..|||||.+..|++.++.- .+ ++.++ .|+.+-=+.= +.+...|..+++.+.++ ++|++ -
T Consensus 5 SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~--dkeViYrS~I~fTPl~~~~~ID~~al~~iv~--~eY~~----A 76 (473)
T PF06277_consen 5 SVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIV--DKEVIYRSPIYFTPLLSQTEIDAEALKEIVE--EEYRK----A 76 (473)
T ss_pred EEEEeecCCceeEEEEEeEEEeccCCCccceEEEe--ccEEEecCCccccCCCCCCccCHHHHHHHHH--HHHHH----c
Confidence 46899999999999998641 11 23333 2333211111 12336777777776654 34443 3
Q ss_pred CCCcccE----EEEeehhhhhcCChHHHHHHHHHHcCCcEE-EeChHHHHHHHHhhhhcc-CC-CCCCceEEEEeCCCce
Q 008139 83 NISRDHT----RAVATAAVRAAENKDEFVECVREKVGFEVD-VLTGEQEAKFVYMGVLQF-LP-VFDRLVLSVDIGGGST 155 (576)
Q Consensus 83 ~v~~~~i----~~vATsAvR~A~N~~~fl~~i~~~tG~~i~-vIsg~eEA~l~~~gv~~~-l~-~~~~~~lviDIGGGSt 155 (576)
|+.+++| ..+.-++.|+ +|++++++.+....|==|= -=-..=|+-+...|.-.. +. ......+=+|||||.|
T Consensus 77 gi~p~~I~TGAVIITGETArK-eNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTt 155 (473)
T PF06277_consen 77 GITPEDIDTGAVIITGETARK-ENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTT 155 (473)
T ss_pred CCCHHHCccccEEEecchhhh-hhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCce
Confidence 5554433 2233344454 7999999999999883332 333456888888876432 22 1234578899999999
Q ss_pred eEEEeeCCeEeeEEeechhH
Q 008139 156 EFVIGKRGKVVFCESVNLGH 175 (576)
Q Consensus 156 El~~~~~~~~~~~~SlplG~ 175 (576)
-+++|++|++..+..|.+|.
T Consensus 156 N~avf~~G~v~~T~cl~IGG 175 (473)
T PF06277_consen 156 NIAVFDNGEVIDTACLDIGG 175 (473)
T ss_pred eEEEEECCEEEEEEEEeecc
Confidence 99999999999999999996
No 21
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.23 E-value=0.0035 Score=67.63 Aligned_cols=153 Identities=22% Similarity=0.317 Sum_probs=87.7
Q ss_pred eEEEEEecccceEEEEEEEeCC---C-----CEEEEEeeeeeeeeccC----CCcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 008139 14 LFASIDMGTSSFKLLIIRAYPN---G-----KFLTIDTLKQPVILGRD----LSSSCSISTQSQARSVESLLMFRDIIQS 81 (576)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~---~-----~~~~l~~~k~~vrLg~~----~~~~g~Ls~e~i~r~~~~L~~f~~~~~~ 81 (576)
+-..|||||.+..|++.++.-. + ++.+++ |+.+-=++= +.+...|..+++.+.++. +|++
T Consensus 7 ~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~d--kev~yrS~i~fTPl~~~~~ID~~~i~~~V~~--ey~~---- 78 (475)
T PRK10719 7 LSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIID--KEIIYRSPIYFTPLLKQGEIDEAAIKELIEE--EYQK---- 78 (475)
T ss_pred EEEEEeccCceEEEEEEEEEEecccccccCceEEEee--eEEEEecCceecCCCCCccccHHHHHHHHHH--HHHH----
Confidence 3478999999999999987521 1 234443 222211111 123467777777776653 3332
Q ss_pred CCCCcccEE---EEeehhhhhcCChHHHHHHHHHH--------cCCcEEEeChHHHHHHHHhhhhc-cCC-CCCCceEEE
Q 008139 82 HNISRDHTR---AVATAAVRAAENKDEFVECVREK--------VGFEVDVLTGEQEAKFVYMGVLQ-FLP-VFDRLVLSV 148 (576)
Q Consensus 82 ~~v~~~~i~---~vATsAvR~A~N~~~fl~~i~~~--------tG~~i~vIsg~eEA~l~~~gv~~-~l~-~~~~~~lvi 148 (576)
-|+++.+|. .+=|...-...|....+++.-.. .|+++ |+.+..+|... .+. ..+...+++
T Consensus 79 Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~l-------e~iva~~ASg~avLseEke~gVa~I 151 (475)
T PRK10719 79 AGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDL-------ESIIAGKGAGAQTLSEERNTRVLNI 151 (475)
T ss_pred cCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccH-------HHhhhHHHhhHHHhhhhccCceEEE
Confidence 233322221 11222222234666666653322 35444 33333232221 121 223457999
Q ss_pred EeCCCceeEEEeeCCeEeeEEeechhHHHHHHh
Q 008139 149 DIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEK 181 (576)
Q Consensus 149 DIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~ 181 (576)
|||||+|.++++++|++.++.++|+|.-.++..
T Consensus 152 DIGgGTT~iaVf~~G~l~~T~~l~vGG~~IT~D 184 (475)
T PRK10719 152 DIGGGTANYALFDAGKVIDTACLNVGGRLIETD 184 (475)
T ss_pred EeCCCceEEEEEECCEEEEEEEEecccceEEEC
Confidence 999999999999999999999999998777653
No 22
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=97.06 E-value=0.0064 Score=60.36 Aligned_cols=116 Identities=16% Similarity=0.062 Sum_probs=69.7
Q ss_pred HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCCchhhh
Q 008139 345 RSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQS 424 (576)
Q Consensus 345 ~s~~~l~~ry~~d~~~~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~~~h~~Hs 424 (576)
+.+..+++...-+....|..+|..+|..|-.+-.+.++ -+..+|..||+|||||..-.+.+..+.+
T Consensus 42 ~~a~~~~~~~l~~~~~~Hs~RV~~~a~~ia~~e~~~~~--------------~D~evl~lAALLHDIG~~~~~~~~~~~~ 107 (228)
T TIGR03401 42 KFAQEYAKARLPPETYNHSLRVYYYGLAIARDQFPEWD--------------LSDETWFLTCLLHDIGTTDENMTATKMS 107 (228)
T ss_pred HHHHHHHHhhCCHhhhHHHHHHHHHHHHHHHHhccccC--------------CCHHHHHHHHHHHhhccccccCCcccCC
Confidence 34444554443333348999999999875322111122 2346899999999999843332212222
Q ss_pred H--H------HHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhccCChHHHHHHHHHHHHHHHHHHhcc
Q 008139 425 C--H------IIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQ 490 (576)
Q Consensus 425 ~--y------iI~ns~~l~G~s~~E~~~iA~i~ryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~ 490 (576)
+ + =++.. ..|++..+...+..++..|+...-. . + . ..++.|+..|+.||.
T Consensus 108 fe~~ga~~A~~~L~~--~~G~~~~~~~~V~~aI~~H~~~~~~--~--~--~--------~~e~~lvq~Ad~lDa 165 (228)
T TIGR03401 108 FEFYGGILALDVLKE--QTGANQDQAEAVAEAIIRHQDLGVD--G--T--I--------TTLGQLLQLATIFDN 165 (228)
T ss_pred HHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHhCCCCC--C--C--c--------CHHHHHHHHHHHHhH
Confidence 2 1 22333 1389999999999999889542211 1 1 1 226889999999985
No 23
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=97.06 E-value=0.014 Score=61.36 Aligned_cols=118 Identities=17% Similarity=0.195 Sum_probs=72.6
Q ss_pred cCCCCCH-HHHHHHHHHHHHHHHHHHHC-CCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHh
Q 008139 56 SSCSIST-QSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYM 132 (576)
Q Consensus 56 ~~g~Ls~-e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i-~vIsg~eEA~l~~~ 132 (576)
.+|.+.+ +.+++.+ +.+.+.++.. ... .-++|-|--.---.+....+..+-+..|+++ .+++...=|-+.|
T Consensus 66 ~~G~i~d~~~~~~~l---~~~~~~~~~~~~~~--~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~- 139 (336)
T PRK13928 66 RDGVIADYDVTEKML---KYFINKACGKRFFS--KPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGA- 139 (336)
T ss_pred CCCeEecHHHHHHHH---HHHHHHHhccCCCC--CCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHc-
Confidence 3466644 4454444 4443333322 121 2233444333333456777878888889985 5665555554433
Q ss_pred hhhccCCCCCCceEEEEeCCCceeEEEeeCCeEeeEEeechhHHHHHHhh
Q 008139 133 GVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (576)
Q Consensus 133 gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f 182 (576)
|. ... .....+|+|||||+|+++++..+.+....++++|.--+++..
T Consensus 140 g~--~~~-~~~~~lVvDiGggttdvsvv~~g~~~~~~~~~lGG~did~~i 186 (336)
T PRK13928 140 GL--DIS-QPSGNMVVDIGGGTTDIAVLSLGGIVTSSSIKVAGDKFDEAI 186 (336)
T ss_pred CC--ccc-CCCeEEEEEeCCCeEEEEEEEeCCEEEeCCcCCHHHHHHHHH
Confidence 22 222 123489999999999999999998888889999998887754
No 24
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.00 E-value=0.019 Score=60.60 Aligned_cols=40 Identities=38% Similarity=0.553 Sum_probs=34.0
Q ss_pred ceEEEEeCCCceeEEEeeCCeEeeEEeechhHHHHHHhhc
Q 008139 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFG 183 (576)
Q Consensus 144 ~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~ 183 (576)
..+++|||..+|+++++++|++.++.++++|.-.+++...
T Consensus 181 ~~~lvdiG~~~t~~~i~~~g~~~f~R~i~~G~~~l~~~i~ 220 (340)
T PF11104_consen 181 TVALVDIGASSTTVIIFQNGKPIFSRSIPIGGNDLTEAIA 220 (340)
T ss_dssp EEEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHH
T ss_pred eEEEEEecCCeEEEEEEECCEEEEEEEEeeCHHHHHHHHH
Confidence 4689999999999999999999999999999999998654
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=96.83 E-value=0.022 Score=59.73 Aligned_cols=88 Identities=22% Similarity=0.229 Sum_probs=56.4
Q ss_pred EEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCeEeeEE
Q 008139 91 AVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCE 169 (576)
Q Consensus 91 ~vATsAvR~A~N~~~fl~~i~~~tG~~i-~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~ 169 (576)
+|.|.-.---....+.+.++.+..|++. .+++.. ....++...... ....++|+|+|||.|+++.+..|.+....
T Consensus 103 vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~ep---~AAa~a~g~~~~-~~~~~lVvDiG~gttdvs~v~~g~~~~~~ 178 (335)
T PRK13930 103 IVICVPSGITEVERRAVREAAEHAGAREVYLIEEP---MAAAIGAGLPVT-EPVGNMVVDIGGGTTEVAVISLGGIVYSE 178 (335)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcCCCeEEecccH---HHHHHhcCCCcC-CCCceEEEEeCCCeEEEEEEEeCCEEeec
Confidence 3444433333334455555667788875 455433 333333221111 12347999999999999999999988888
Q ss_pred eechhHHHHHHhh
Q 008139 170 SVNLGHVSLSEKF 182 (576)
Q Consensus 170 SlplG~vrl~e~f 182 (576)
..++|.-.+++..
T Consensus 179 ~~~lGG~~id~~l 191 (335)
T PRK13930 179 SIRVAGDEMDEAI 191 (335)
T ss_pred CcCchhHHHHHHH
Confidence 9999998888754
No 26
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=96.75 E-value=0.033 Score=58.67 Aligned_cols=118 Identities=23% Similarity=0.258 Sum_probs=70.3
Q ss_pred cCCCCC-HHHHHHHHHHHHHHHHHHH-HCCCCcc-cEEEEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHH
Q 008139 56 SSCSIS-TQSQARSVESLLMFRDIIQ-SHNISRD-HTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVY 131 (576)
Q Consensus 56 ~~g~Ls-~e~i~r~~~~L~~f~~~~~-~~~v~~~-~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i-~vIsg~eEA~l~~ 131 (576)
.+|.+. .+.++. .|+.+...+. ..+.+.. .-.+++..+.-...+++.+.+ .-+..|+++ .+++..-=|-+.|
T Consensus 67 ~~G~I~d~d~~~~---~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~ 142 (335)
T PRK13929 67 KDGVIADYDMTTD---LLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGA 142 (335)
T ss_pred CCCccCCHHHHHH---HHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhc
Confidence 345553 344444 4444444342 3454321 123344444444455666666 555679885 5555554444432
Q ss_pred hhhhccCCC-CCCceEEEEeCCCceeEEEeeCCeEeeEEeechhHHHHHHhh
Q 008139 132 MGVLQFLPV-FDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (576)
Q Consensus 132 ~gv~~~l~~-~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f 182 (576)
| ++. .....+|+|||||+|+++++..+.+..+.++++|.--+++..
T Consensus 143 -g----~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~~~~~GG~~id~~l 189 (335)
T PRK13929 143 -D----LPVDEPVANVVVDIGGGTTEVAIISFGGVVSCHSIRIGGDQLDEDI 189 (335)
T ss_pred -C----CCcCCCceEEEEEeCCCeEEEEEEEeCCEEEecCcCCHHHHHHHHH
Confidence 2 221 223589999999999999998788888889999988887643
No 27
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.68 E-value=0.15 Score=52.45 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=57.5
Q ss_pred HHHHHHHHHHcCCcEEEeChHHHHHHHHhhhh-ccCCCCCC--ceEEEEeCCCceeEEEeeCCeEeeEEeechhHHHHHH
Q 008139 104 DEFVECVREKVGFEVDVLTGEQEAKFVYMGVL-QFLPVFDR--LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSE 180 (576)
Q Consensus 104 ~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~-~~l~~~~~--~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e 180 (576)
+.-++.++ ..|+++.|++=+.=|-+-.+... +.+..... ..+++|||+-||++.+..+|++.+....|+|+--|++
T Consensus 152 ~~ri~a~~-~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly~r~~~~g~~Qlt~ 230 (354)
T COG4972 152 ESRIDAFE-LAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILYTREVPVGTDQLTQ 230 (354)
T ss_pred HHHHHHHH-HcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeeeEeeccCcHHHHHH
Confidence 33344333 45999999988877777666522 22221111 1469999999999999999999999999999999998
Q ss_pred hhc
Q 008139 181 KFG 183 (576)
Q Consensus 181 ~f~ 183 (576)
.+.
T Consensus 231 ~i~ 233 (354)
T COG4972 231 EIQ 233 (354)
T ss_pred HHH
Confidence 653
No 28
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=96.59 E-value=0.0094 Score=62.27 Aligned_cols=121 Identities=15% Similarity=0.157 Sum_probs=69.6
Q ss_pred HHHHHHHHhCCcc-cchhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCC-Cchhh
Q 008139 346 SVVRLAMRFNNKK-RVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK-GYHKQ 423 (576)
Q Consensus 346 s~~~l~~ry~~d~-~~~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~~-~h~~H 423 (576)
.+.++..+|..+. ...|..+|+++|..|=++ .+. +..++.+||+|||||..-.+. +|..-
T Consensus 174 e~l~Ll~k~~~~e~l~~Hs~rVa~lA~~LA~~----~~~--------------D~~ll~aAALLHDIGK~k~~~~~H~~~ 235 (339)
T PRK12703 174 QCLDLLKKYGASDLLIRHVKTVYKLAMRIADC----INA--------------DRRLVAAGALLHDIGRTKTNGIDHAVA 235 (339)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH----cCC--------------CHHHHHHHHHHHhcccccccCCCHHHH
Confidence 3456666665442 227999999999876433 221 246888999999999987754 67777
Q ss_pred hHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhccCChHHHHHHHHHHHHHHHHHHhcccc
Q 008139 424 SCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQND 492 (576)
Q Consensus 424 s~yiI~ns~~l~G~s~~E~~~iA~i~ryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~ 492 (576)
++.++... ||+.+ ++..+.+++....+... .....|++.+..-...-+.|+..||.|....
T Consensus 236 Ga~iL~e~----G~~e~---i~~iIe~H~g~G~~~~~-~~~~gL~~~~~~P~TLEakIV~dADrL~~~~ 296 (339)
T PRK12703 236 GAEILRKE----NIDDR---VVSIVERHIGAGITSEE-AQKLGLPVKDYVPETIEEMIVAHADNLFAGD 296 (339)
T ss_pred HHHHHHHC----CCCHH---HHHHHHHHhccCCCcch-hhccCCccccCCCCCHHHHHHHHHHHHhcCC
Confidence 77776643 56643 33333333333333211 0011122111111122366899999997655
No 29
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=96.41 E-value=0.061 Score=56.50 Aligned_cols=88 Identities=20% Similarity=0.213 Sum_probs=56.6
Q ss_pred EEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCeEeeEE
Q 008139 91 AVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCE 169 (576)
Q Consensus 91 ~vATsAvR~A~N~~~fl~~i~~~tG~~i-~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~ 169 (576)
+|-|.-.---.+..+.+..+-+..|++. .+++..--|-|.| |. ... .....+|+|+|||+|+++.+..+.+....
T Consensus 101 ~vitvP~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~-g~--~~~-~~~~~lVvDiG~gttdvs~v~~~~~~~~~ 176 (333)
T TIGR00904 101 IVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGA-GL--PVE-EPTGSMVVDIGGGTTEVAVISLGGIVVSR 176 (333)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhc-CC--ccc-CCceEEEEEcCCCeEEEEEEEeCCEEecC
Confidence 3444433223333444666667778884 5666665555543 21 111 22347999999999999999777777777
Q ss_pred eechhHHHHHHhh
Q 008139 170 SVNLGHVSLSEKF 182 (576)
Q Consensus 170 SlplG~vrl~e~f 182 (576)
+.++|.-.+++..
T Consensus 177 ~~~lGG~did~~l 189 (333)
T TIGR00904 177 SIRVGGDEFDEAI 189 (333)
T ss_pred CccchHHHHHHHH
Confidence 8889988887754
No 30
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=96.36 E-value=0.0096 Score=48.03 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCC-----CCchhhhHHHHHcCCCCC
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK-----KGYHKQSCHIIMNGDHLY 435 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~-----~~h~~Hs~yiI~ns~~l~ 435 (576)
.|+..|+.+|..+ .+..++ + ...+.+||+|||||+...+ .+|...+++++...
T Consensus 7 ~H~~~v~~~a~~l----a~~~~~-----------~---~~~l~~AalLHDiG~~~~~~~~~~~~H~~~g~~~l~~~---- 64 (80)
T TIGR00277 7 QHSLEVAKLAEAL----ARELGL-----------D---VELARRGALLHDIGKPITREGVIFESHAVVGAEIARKY---- 64 (80)
T ss_pred HHHHHHHHHHHHH----HHHcCC-----------C---HHHHHHHHHHHccCCcccchHHHHHchHHHHHHHHHHc----
Confidence 6888999988865 333332 1 2458899999999999864 56778888888644
Q ss_pred CCCHHHHHHHHHHHHhcc
Q 008139 436 GYSTDEIKLIALLTRFHR 453 (576)
Q Consensus 436 G~s~~E~~~iA~i~ryhr 453 (576)
|+.. .+..++++|.
T Consensus 65 ~~~~----~~~~~I~~Hh 78 (80)
T TIGR00277 65 GEPL----EVIDIIAEHH 78 (80)
T ss_pred CCCH----HHHHHHHHHc
Confidence 3443 4455555554
No 31
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=96.36 E-value=0.074 Score=55.83 Aligned_cols=88 Identities=23% Similarity=0.232 Sum_probs=56.5
Q ss_pred EeehhhhhcCChHHHHHHHHHHcCCcEE-EeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCeEeeEEe
Q 008139 92 VATAAVRAAENKDEFVECVREKVGFEVD-VLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCES 170 (576)
Q Consensus 92 vATsAvR~A~N~~~fl~~i~~~tG~~i~-vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~S 170 (576)
|-|.-.---.++...+...-+..|++.- +++...-|-+.| |. ... .....+|+|+|||+|.++.+..+.+....+
T Consensus 100 vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~-g~--~~~-~~~~~lvvDiGggttdvs~v~~~~~~~~~~ 175 (334)
T PRK13927 100 VICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGA-GL--PVT-EPTGSMVVDIGGGTTEVAVISLGGIVYSKS 175 (334)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHc-CC--ccc-CCCeEEEEEeCCCeEEEEEEecCCeEeeCC
Confidence 4443333334555666677777888754 444444343332 22 111 123469999999999999997777777788
Q ss_pred echhHHHHHHhhc
Q 008139 171 VNLGHVSLSEKFG 183 (576)
Q Consensus 171 lplG~vrl~e~f~ 183 (576)
.++|.-.+++.+.
T Consensus 176 ~~lGG~~id~~l~ 188 (334)
T PRK13927 176 VRVGGDKFDEAII 188 (334)
T ss_pred cCChHHHHHHHHH
Confidence 8999888887553
No 32
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=96.32 E-value=0.045 Score=55.04 Aligned_cols=129 Identities=16% Similarity=0.211 Sum_probs=81.5
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEee
Q 008139 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (576)
+..||+||.|++.++++ + | +++..... +.+.. .+..+++|++. +++.+.+..++..++.
T Consensus 2 ~lGIDiGtts~K~vl~d-~--g--~il~~~~~---------~~~~~----~~~~~~~l~~~---~~~~~~~~~~i~~i~~ 60 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLME-D--G--KVIGYKWL---------DTTPV----IEETARAILEA---LKEAGIGLEPIDKIVA 60 (248)
T ss_pred EEEEEcChhheEEEEEc-C--C--EEEEEEEe---------cCCCC----HHHHHHHHHHH---HHHcCCChhheeEEEE
Confidence 46799999999999996 3 4 34443332 11111 23334444443 4455665556666655
Q ss_pred hhhh-hcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCeEe---eEEe
Q 008139 95 AAVR-AAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVV---FCES 170 (576)
Q Consensus 95 sAvR-~A~N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~---~~~S 170 (576)
+.-+ ..-. | .+ .. ..|.--...|+....|. . -.|+||||..|-++.+++|++. ....
T Consensus 61 Tg~~~~~v~---~-------~~---~~---~~ei~~~~~g~~~~~~~--~-~~vidiGgqd~k~i~~~~g~~~~~~~n~~ 121 (248)
T TIGR00241 61 TGYGRHKVG---F-------AD---KI---VTEISCHGKGANYLAPE--A-RGVIDIGGQDSKVIKIDDGKVDDFTMNDK 121 (248)
T ss_pred ECCCccccc---c-------cC---Cc---eEEhhHHHHHHHHHCCC--C-CEEEEecCCeeEEEEECCCcEeeeeecCc
Confidence 4443 3221 1 11 11 23556666777776663 2 2699999999999999999877 6666
Q ss_pred echhHHHHHHhhc
Q 008139 171 VNLGHVSLSEKFG 183 (576)
Q Consensus 171 lplG~vrl~e~f~ 183 (576)
...|+-++.|...
T Consensus 122 ca~Gtg~f~e~~a 134 (248)
T TIGR00241 122 CAAGTGRFLEVTA 134 (248)
T ss_pred ccccccHHHHHHH
Confidence 7899999998764
No 33
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=96.27 E-value=0.017 Score=64.22 Aligned_cols=93 Identities=13% Similarity=0.032 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCC---CCchhhhHHHHHcCCCCCCC
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK---KGYHKQSCHIIMNGDHLYGY 437 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~---~~h~~Hs~yiI~ns~~l~G~ 437 (576)
.|+..|+.+|..| ...+|++ ...+..|++|||||+.+.+ .+|..-+++++...+ +
T Consensus 332 ~Hs~~VA~lA~~L----A~~lgld--------------~~~a~~AGLLHDIGK~~~~e~~~~H~~~Ga~ll~~~~----~ 389 (514)
T TIGR03319 332 QHSIEVAHLAGIM----AAELGED--------------VKLAKRAGLLHDIGKAVDHEVEGSHVEIGAELAKKYK----E 389 (514)
T ss_pred HHHHHHHHHHHHH----HHHhCcC--------------HHHHHHHHHHHhcCcccchhhcccHHHHHHHHHHHcC----C
Confidence 6999999999875 3444432 2467789999999998654 357777788886553 3
Q ss_pred CHHHHHHHHHHHHhccCCCCCCCchhhccCChHHHHHHHHHHHHHHHHHHhccccCCC
Q 008139 438 STDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDCVN 495 (576)
Q Consensus 438 s~~E~~~iA~i~ryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~~~~ 495 (576)
+ ..+...++||....++ ...++.++.+|+.|+.++.+.
T Consensus 390 ~----~~V~~aI~~HH~~~~~----------------~~~~a~IV~~AD~lsa~rpga 427 (514)
T TIGR03319 390 S----PEVVNAIAAHHGDVEP----------------TSIEAVLVAAADALSAARPGA 427 (514)
T ss_pred C----HHHHHHHHHhCCCCCC----------------CCHHHHHHHHHHHhcCCCCCC
Confidence 3 2455666666542211 024678899999998877543
No 34
>PRK12705 hypothetical protein; Provisional
Probab=96.13 E-value=0.027 Score=62.10 Aligned_cols=93 Identities=16% Similarity=0.109 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCC---CchhhhHHHHHcCCCCCCC
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---GYHKQSCHIIMNGDHLYGY 437 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~~---~h~~Hs~yiI~ns~~l~G~ 437 (576)
.|+..|+.+|..| ....|+ + ..+...|++|||||+.+... .|..-+++++... ||
T Consensus 326 ~HSl~VA~lA~~L----A~~lGl-----------d---~d~a~~AGLLHDIGK~ie~e~~~~H~~iGaeLlkk~----~~ 383 (508)
T PRK12705 326 SHSLEVAHLAGII----AAEIGL-----------D---PALAKRAGLLHDIGKSIDRESDGNHVEIGAELARKF----NE 383 (508)
T ss_pred HHHHHHHHHHHHH----HHHcCc-----------C---HHHHHHHHHHHHcCCcchhhhcccHHHHHHHHHHhc----CC
Confidence 5999999999875 333343 2 24567899999999998664 4666688888654 45
Q ss_pred CHHHHHHHHHHHHhccCCCCCCCchhhccCChHHHHHHHHHHHHHHHHHHhccccCCC
Q 008139 438 STDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDCVN 495 (576)
Q Consensus 438 s~~E~~~iA~i~ryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~~~~ 495 (576)
++ .+...+.+|....... + ..+.|+.+|++|+..+.+.
T Consensus 384 p~----~Vv~aI~~HHe~~~~~--------~--------~~a~IVaiADaLSaaRpGa 421 (508)
T PRK12705 384 PD----EVINAIASHHNKVNPE--------T--------VYSVLVQIADALSAARPGA 421 (508)
T ss_pred CH----HHHHHHHHhCCCCCCC--------C--------HHHHHHHHHHHHcCCCCCC
Confidence 44 2455555665332211 0 3577899999998877554
No 35
>PRK12704 phosphodiesterase; Provisional
Probab=96.05 E-value=0.03 Score=62.29 Aligned_cols=92 Identities=13% Similarity=0.047 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCC---CCchhhhHHHHHcCCCCCCC
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK---KGYHKQSCHIIMNGDHLYGY 437 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~---~~h~~Hs~yiI~ns~~l~G~ 437 (576)
.|+..|+.+|..| ....|+. ...+..|++|||||+..++ .+|...++.++...+ +
T Consensus 338 ~Hs~~Va~lA~~l----A~~lgld--------------~~~a~~AgLLHDIGK~~~~e~~~~H~~iGa~il~~~~----~ 395 (520)
T PRK12704 338 QHSIEVAHLAGLM----AAELGLD--------------VKLAKRAGLLHDIGKALDHEVEGSHVEIGAELAKKYK----E 395 (520)
T ss_pred HHHHHHHHHHHHH----HHHhCcC--------------HHHHHHHHHHHccCcCccccccCCHHHHHHHHHHHcC----C
Confidence 5999999999875 3333432 2457899999999998755 467788888887553 3
Q ss_pred CHHHHHHHHHHHHhccCCCCCCCchhhccCChHHHHHHHHHHHHHHHHHHhccccCC
Q 008139 438 STDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDCV 494 (576)
Q Consensus 438 s~~E~~~iA~i~ryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~~~ 494 (576)
+ ..+..++.+|....+. . ..++.|+.+|++|+..+.+
T Consensus 396 ~----~~v~~aI~~HHe~~~~--------~--------~~~a~IV~~ADaLsa~Rpg 432 (520)
T PRK12704 396 S----PVVINAIAAHHGDEEP--------T--------SIEAVLVAAADAISAARPG 432 (520)
T ss_pred C----HHHHHHHHHcCCCCCC--------C--------CHHHHHHHHHHHHhCcCCC
Confidence 3 3466666677643211 0 1267889999999988753
No 36
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=96.04 E-value=0.012 Score=62.12 Aligned_cols=93 Identities=19% Similarity=0.148 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCC--------------------CCc
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK--------------------KGY 420 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~--------------------~~h 420 (576)
.|+..|+.+|..| ...+++ ++ ..+.+|++|||||+...+ ..|
T Consensus 199 ~HSl~VA~~A~~L----A~~~g~-----------d~---~~a~~AGLLHDIGK~~~~~~~~~~~~~~~~~~~~~~~~~~H 260 (342)
T PRK07152 199 KHCLRVAQLAAEL----AKKNNL-----------DP---KKAYYAGLYHDITKEWDEEKHRKFLKKYLKDVKNLPWYVLH 260 (342)
T ss_pred HHHHHHHHHHHHH----HHHhCc-----------CH---HHHHHHHHHHHhhccCCHHHHHHHHHhcCCchhhcchHHHh
Confidence 7999999999975 333332 21 568899999999996532 236
Q ss_pred hhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhccCChHHHHHHHHHHHHHHHHHHhccccC
Q 008139 421 HKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDC 493 (576)
Q Consensus 421 ~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~~ 493 (576)
..-+++++.+. .||+.++ ++..++||..... .+..++.|+.+|+.++..|.
T Consensus 261 ~~~Ga~ll~~~---~~~p~~~---i~~aI~~Hh~~~~----------------~~~~l~~iV~lAD~l~~~R~ 311 (342)
T PRK07152 261 QYVGALWLKHV---YGIDDEE---ILNAIRNHTSLAE----------------EMSTLDKIVYVADKIEPGRK 311 (342)
T ss_pred HHHHHHHHHHH---cCCCcHH---HHHHHHhccCCCC----------------CcCHHHHHHHhhhhcccCCC
Confidence 66677776543 4565433 5566677763221 12347899999999987653
No 37
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=95.92 E-value=0.0094 Score=57.68 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=49.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcccccchhhhhhcc-cCc-chHHHHHHHHHHhhcccccCCCCchhhhHHHHH
Q 008139 357 KKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIAS-FED-KDLEYLEAACLLHNIGHFTSKKGYHKQSCHIIM 429 (576)
Q Consensus 357 d~~~~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~-~~~-~~r~LL~~AalLHdIG~~I~~~~h~~Hs~yiI~ 429 (576)
|-...|++-|+.-|+.||+-|.+. |..+... ... .+. +...+.-.+|.|||||..++-++|+.||+++-+
T Consensus 56 DHG~vHa~Iva~~Al~i~~lL~~~-Gv~ps~v--~dg~gd~eD~~vivlLga~LHDIGnsVHRd~H~~~sa~La~ 127 (269)
T COG3294 56 DHGPVHARIVANSALAIYKLLLEK-GVKPSGV--TDGVGDEEDSPVIVLLGAYLHDIGNSVHRDDHELYSAVLAL 127 (269)
T ss_pred CCCceeeeeccchHHHHHHHHHhc-CCCcccc--cccCCchhhhhHHHHHHHHHHhccchhccccHHHHhHHHhH
Confidence 334479999999999999999753 2221110 000 111 233567789999999999999999999998753
No 38
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=95.66 E-value=0.028 Score=53.08 Aligned_cols=85 Identities=20% Similarity=0.162 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHH---HHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccC----------------CCCch
Q 008139 361 KAGAQCASIAKDIF---EGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTS----------------KKGYH 421 (576)
Q Consensus 361 ~ha~~V~~~A~~LF---d~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~----------------~~~h~ 421 (576)
.|...|+.+|..|. ..+.... +.+.+.++.+||+|||||+.-. ..+|.
T Consensus 3 ~H~~~v~~~a~~l~~~~~~~~~~~-------------~~~~~~~~~~~~~lHDiGK~~~~FQ~~~~~~~~~~~~~~~~H~ 69 (177)
T TIGR01596 3 EHLLDVAAVAEKLKNLDIVIADLI-------------GKLLRELLDLLALLHDIGKINPGFQAKLMKAYKRGRRVASRHS 69 (177)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHH-------------hhHHHHHHHHHHHHccCccCCHHHHHHhhcccccccCCCCCHH
Confidence 58888888887764 1222221 2234789999999999999632 34566
Q ss_pred hhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCC
Q 008139 422 KQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPR 458 (576)
Q Consensus 422 ~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryhrk~~~~ 458 (576)
.-|.+++...-.-.|+.......++.++.+|.+..+.
T Consensus 70 ~~s~~~~~~~~~~~~~~~~~~~~~~~~I~~HHg~~~~ 106 (177)
T TIGR01596 70 LLSAKLLDALLIKKGYEEEVFKLLALAVIGHHGGLSN 106 (177)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCchh
Confidence 6677776542102567777888899988888777653
No 39
>PRK00106 hypothetical protein; Provisional
Probab=95.64 E-value=0.051 Score=60.31 Aligned_cols=93 Identities=11% Similarity=0.056 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCC---CchhhhHHHHHcCCCCCCC
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---GYHKQSCHIIMNGDHLYGY 437 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~~---~h~~Hs~yiI~ns~~l~G~ 437 (576)
.|+-.|+.+|..| ...+|+. ..++..|++|||||+.+... +|..-++.++... |+
T Consensus 353 ~HSv~VA~lA~~l----A~~lgld--------------~e~a~~AGLLHDIGK~v~~e~~g~Ha~iGa~ll~~~----~~ 410 (535)
T PRK00106 353 RHSVEVGKLAGIL----AGELGEN--------------VALARRAGFLHDMGKAIDREVEGSHVEIGMEFARKY----KE 410 (535)
T ss_pred HHHHHHHHHHHHH----HHHhCCC--------------HHHHHHHHHHHhccCccCccccCChHHHHHHHHHHc----CC
Confidence 7899999988864 4444431 25799999999999998754 4777788888544 34
Q ss_pred CHHHHHHHHHHHHhccCCCCCCCchhhccCChHHHHHHHHHHHHHHHHHHhccccCCC
Q 008139 438 STDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDCVN 495 (576)
Q Consensus 438 s~~E~~~iA~i~ryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~~~~ 495 (576)
++ .+...+.||....+.. ..++.++.+|+.|+..+.+.
T Consensus 411 ~~----~v~~aI~~HH~~~~~~----------------s~~a~IV~~AD~lsa~Rpga 448 (535)
T PRK00106 411 HP----VVVNTIASHHGDVEPE----------------SVIAVIVAAADALSSARPGA 448 (535)
T ss_pred CH----HHHHHHHHhCCCCCCC----------------ChHHHHHHHHHHhccCCCCC
Confidence 43 2455555665433210 12688999999999888544
No 40
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=95.55 E-value=0.034 Score=53.16 Aligned_cols=140 Identities=24% Similarity=0.309 Sum_probs=83.0
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCE-EEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHH-HHCCCCcccE
Q 008139 12 QTLFASIDMGTSSFKLLIIRAYPNGKF-LTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDII-QSHNISRDHT 89 (576)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~-~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~-~~~~v~~~~i 89 (576)
.+++-.+|+|+-+|-..|.+- +|.+ -........||=|--++ .-.++++.++.++.+ +++|+. +
T Consensus 28 sk~~vGVDLGT~~iV~~vlD~--d~~Pvag~~~~advVRDGiVvd---------f~eaveiVrrlkd~lEk~lGi~---~ 93 (277)
T COG4820 28 SKLWVGVDLGTCDIVSMVLDR--DGQPVAGCLDWADVVRDGIVVD---------FFEAVEIVRRLKDTLEKQLGIR---F 93 (277)
T ss_pred CceEEEeecccceEEEEEEcC--CCCeEEEEehhhhhhccceEEe---------hhhHHHHHHHHHHHHHHhhCeE---e
Confidence 368889999999998888754 4543 23344445555443332 234556666666655 345662 3
Q ss_pred EEEeehhhhhc---CChHHHHHHHHHHcCCcEE-EeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCeE
Q 008139 90 RAVATAAVRAA---ENKDEFVECVREKVGFEVD-VLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKV 165 (576)
Q Consensus 90 ~~vATsAvR~A---~N~~~fl~~i~~~tG~~i~-vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~ 165 (576)
.=-+|+ +--- -|....++-|+ -.|+++- +|+...-|.+ -+.. +++.|+|||||.|.++++++|++
T Consensus 94 tha~ta-iPPGt~~~~~ri~iNViE-SAGlevl~vlDEPTAaa~-------vL~l--~dg~VVDiGGGTTGIsi~kkGkV 162 (277)
T COG4820 94 THAATA-IPPGTEQGDPRISINVIE-SAGLEVLHVLDEPTAAAD-------VLQL--DDGGVVDIGGGTTGISIVKKGKV 162 (277)
T ss_pred eecccc-CCCCccCCCceEEEEeec-ccCceeeeecCCchhHHH-------Hhcc--CCCcEEEeCCCcceeEEEEcCcE
Confidence 223333 1111 12222233333 3577754 6665543322 2333 34799999999999999999999
Q ss_pred eeEEeechhHH
Q 008139 166 VFCESVNLGHV 176 (576)
Q Consensus 166 ~~~~SlplG~v 176 (576)
+++--=|-|.-
T Consensus 163 iy~ADEpTGGt 173 (277)
T COG4820 163 IYSADEPTGGT 173 (277)
T ss_pred EEeccCCCCce
Confidence 98876666653
No 41
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=95.52 E-value=0.13 Score=54.90 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=61.6
Q ss_pred CCCCcccEEEEeehhhh-hcCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEE
Q 008139 82 HNISRDHTRAVATAAVR-AAENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (576)
Q Consensus 82 ~~v~~~~i~~vATsAvR-~A~N~~~fl~~i~~~tG~~-i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~ 159 (576)
+++++.+..++-|...- ....++.+.+.+.+..|++ +-++ .++.++.+|.- ..+++|+|||+|+|.++.
T Consensus 89 l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~---~~~~~a~~~~g------~~~~lVVDiG~~~t~v~p 159 (373)
T smart00268 89 LRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIA---IQAVLSLYASG------RTTGLVIDSGDGVTHVVP 159 (373)
T ss_pred cCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEe---ccHHHHHHhCC------CCEEEEEecCCCcceEEE
Confidence 45544344555565432 2345667777777777776 3344 34455444421 345899999999999999
Q ss_pred eeCCeEeeE--EeechhHHHHHHhh
Q 008139 160 GKRGKVVFC--ESVNLGHVSLSEKF 182 (576)
Q Consensus 160 ~~~~~~~~~--~SlplG~vrl~e~f 182 (576)
+-+|.+... ..+|+|.-.+++.+
T Consensus 160 v~~G~~~~~~~~~~~~GG~~l~~~l 184 (373)
T smart00268 160 VVDGYVLPHAIKRIDIAGRDLTDYL 184 (373)
T ss_pred EECCEEchhhheeccCcHHHHHHHH
Confidence 999998855 77899998888765
No 42
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=95.48 E-value=0.052 Score=50.69 Aligned_cols=92 Identities=20% Similarity=0.213 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCC----------------------
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---------------------- 418 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~~---------------------- 418 (576)
+|+..|+.+|..| ...+++ + .....+|++|||||+...+.
T Consensus 11 ~Hsl~Va~~a~~l----A~~~~~-----------d---~e~a~~AGLLHDIGk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (158)
T TIGR00488 11 QHCLGVGQTAKQL----AEANKL-----------D---SKKAEIAGAYHDLAKFLPKEQLKQIAKREKMPAHLLYPSPKL 72 (158)
T ss_pred HHHHHHHHHHHHH----HHHhCc-----------C---HHHHHHHHHHHHHhccCCHHHHHHHHHHcCCCchhhcccccc
Confidence 7999999999875 333332 1 13588999999999864321
Q ss_pred CchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhccCChHHHHHHHHHHHHHHHHHHhcccc
Q 008139 419 GYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQND 492 (576)
Q Consensus 419 ~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~ 492 (576)
.|..-+++++.+ +.||.++ .+...++||... . . . ...|+.++.+|+.++..+
T Consensus 73 ~H~~vGa~ll~~---w~~~~~~---~i~~aI~~H~~~--~---~--------~---~~~l~~iV~lAD~i~~~~ 124 (158)
T TIGR00488 73 LHAYVGAYILKR---EFGVQDE---DILDAIRNHTSG--P---P--------G---MSLLDMIIYVADKLEPNR 124 (158)
T ss_pred cHHHHHHHHHHH---HhCCCcH---HHHHHHHHhCCC--C---C--------C---CCHHHHHHHhHHHHhhcc
Confidence 145555555542 3444333 234445555421 1 0 0 024789999999998766
No 43
>PRK10119 putative hydrolase; Provisional
Probab=95.44 E-value=0.08 Score=52.63 Aligned_cols=95 Identities=11% Similarity=0.094 Sum_probs=59.1
Q ss_pred chhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccc-cCCCC---chhhhHHHHH---cCC
Q 008139 360 VKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF-TSKKG---YHKQSCHIIM---NGD 432 (576)
Q Consensus 360 ~~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~-I~~~~---h~~Hs~yiI~---ns~ 432 (576)
..|..+|.++|.+|= ...+ .+..++.+||+|||||-. -+... +...+...+. ...
T Consensus 27 ~~Hi~RV~~lA~~Ia----~~e~--------------~D~~vv~lAAlLHDv~d~~k~~~~~~~~~~~~a~~a~~~L~~~ 88 (231)
T PRK10119 27 ICHFRRVWATAQKLA----ADDD--------------VDMLVVLTACYFHDIVSLAKNHPQRHRSSILAAEETRRILRED 88 (231)
T ss_pred hHHHHHHHHHHHHHH----HhcC--------------CCHHHHHHHHHHhhcchhhhcCccccchhhHHHHHHHHHHHHc
Confidence 379999999999872 2111 245789999999999741 22211 1222443332 331
Q ss_pred CCCCCCHHHHHHHHHHHHhccCCCC-CCCchhhccCChHHHH
Q 008139 433 HLYGYSTDEIKLIALLTRFHRKKFP-RSHHAFLEEFPEQAKQ 473 (576)
Q Consensus 433 ~l~G~s~~E~~~iA~i~ryhrk~~~-~~~~~~~~~L~~~~~~ 473 (576)
..||+......|..++..|+-+.. ......-..+.+.||.
T Consensus 89 -~~g~~~~~i~~V~~iI~~~sfs~~~~p~tlE~kIVQDADRL 129 (231)
T PRK10119 89 -FPDFPAEKIEAVCHAIEAHSFSAQIAPLTLEAKIVQDADRL 129 (231)
T ss_pred -ccCcCHHHHHHHHHHHHHcCCCCCCCCCCHHHhhhhhHHHH
Confidence 279999999999999988875432 1122334566666643
No 44
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=95.29 E-value=0.02 Score=65.67 Aligned_cols=54 Identities=15% Similarity=0.229 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhcc
Q 008139 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (576)
Q Consensus 399 r~LL~~AalLHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryhr 453 (576)
+.+|.+||+|||||+-.. .+|.+-++.+...--.=+||+++++..+..+++||-
T Consensus 402 ~~lL~LAALlHDIGKg~g-~dHs~~GA~~A~~i~~RLgl~~~~~e~V~~LV~~HL 455 (693)
T PRK00227 402 PDLLLLGALYHDIGKGYP-RPHEQVGAEMVARAARRMGLNLRDRAVVQTLVAEHT 455 (693)
T ss_pred cHHHHHHHHHHhhcCCCC-CChhHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHhc
Confidence 368899999999999874 479999999886653458999999999999999994
No 45
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=95.24 E-value=0.16 Score=54.15 Aligned_cols=86 Identities=19% Similarity=0.135 Sum_probs=56.4
Q ss_pred EEEEeehhhh-hcCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCeEe
Q 008139 89 TRAVATAAVR-AAENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVV 166 (576)
Q Consensus 89 i~~vATsAvR-~A~N~~~fl~~i~~~tG~~-i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~ 166 (576)
..++-|...- .-..++.+.+.+.+..|++ |-+++..-=|.|++ + ..+++|+|||+|+|.++.+-+|.+.
T Consensus 96 ~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~-----g----~~~~lVVDiG~~~t~i~pv~~G~~~ 166 (371)
T cd00012 96 HPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYAS-----G----RTTGLVVDSGDGVTHVVPVYDGYVL 166 (371)
T ss_pred CceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhc-----C----CCeEEEEECCCCeeEEEEEECCEEc
Confidence 3444444332 2234566777777777765 44454443333321 1 2458999999999999999999987
Q ss_pred e--EEeechhHHHHHHhhc
Q 008139 167 F--CESVNLGHVSLSEKFG 183 (576)
Q Consensus 167 ~--~~SlplG~vrl~e~f~ 183 (576)
. ...+++|.-.+++.+.
T Consensus 167 ~~~~~~~~~GG~~l~~~l~ 185 (371)
T cd00012 167 PHAIKRLDLAGRDLTRYLK 185 (371)
T ss_pred hhhheeccccHHHHHHHHH
Confidence 5 3788999988887653
No 46
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.17 E-value=0.021 Score=66.79 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhcc
Q 008139 400 EYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (576)
Q Consensus 400 ~LL~~AalLHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryhr 453 (576)
.+|.+||+|||||+-... +|.+-++.+...--.=+||+.++...++.+++||-
T Consensus 443 ~lL~lAaLlHDiGKg~~~-~Hs~~Ga~~a~~i~~RL~l~~~~~~~v~~LV~~Hl 495 (774)
T PRK03381 443 DLLLLGALLHDIGKGRGG-DHSVVGAELARQIGARLGLSPADVALLSALVRHHL 495 (774)
T ss_pred HHHHHHHHHHhhcCCCCC-ChHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHhh
Confidence 578999999999997654 78888988876653358999999999999999994
No 47
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=95.06 E-value=0.035 Score=60.04 Aligned_cols=65 Identities=18% Similarity=0.386 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHH
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTD 440 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~ 440 (576)
+|+--|..+|..+++.|.....- .+++.++.++++||+|||||.. -.-|++..+.+.+ .++.|+
T Consensus 54 eHSLGV~~la~~~~~~l~~~~~~---------~~~~~~~~~~~~AALLHDIGHg-----PFSH~fE~~~~~~--~~~~He 117 (421)
T COG1078 54 EHSLGVYHLARRLLEHLEKNSEE---------EIDEEERLLVRLAALLHDIGHG-----PFSHTFEYVLDKN--LGFYHE 117 (421)
T ss_pred chhhHHHHHHHHHHHHHhhcccc---------ccchHHHHHHHHHHHHHccCCC-----ccccchHHHhccc--ccccHH
Confidence 69999999999999988754320 2455677899999999999953 3445555555553 444444
Q ss_pred H
Q 008139 441 E 441 (576)
Q Consensus 441 E 441 (576)
+
T Consensus 118 ~ 118 (421)
T COG1078 118 D 118 (421)
T ss_pred H
Confidence 3
No 48
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=95.01 E-value=0.16 Score=52.31 Aligned_cols=109 Identities=19% Similarity=0.226 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHH-HCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCC-
Q 008139 66 ARSVESLLMFRDIIQ-SHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDR- 143 (576)
Q Consensus 66 ~r~~~~L~~f~~~~~-~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~- 143 (576)
+-+-..|+.|.+... ..........++++-.=--..-+.++.+..+.+-.-+|-+|.... -...|+- +|..+.
T Consensus 79 ~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~---aAAIGag--lpi~ep~ 153 (342)
T COG1077 79 EVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPM---AAAIGAG--LPIMEPT 153 (342)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHH---HHHhcCC--CcccCCC
Confidence 334456777877654 233111112233322111122344567777776666777775444 3444543 443222
Q ss_pred ceEEEEeCCCceeEEEeeCCeEeeEEeechhHHHHH
Q 008139 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLS 179 (576)
Q Consensus 144 ~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~ 179 (576)
..+++|||||+||+.+..-+.++.+.|+.+|.=.+.
T Consensus 154 G~mvvDIGgGTTevaVISlggiv~~~Sirv~GD~~D 189 (342)
T COG1077 154 GSMVVDIGGGTTEVAVISLGGIVSSSSVRVGGDKMD 189 (342)
T ss_pred CCEEEEeCCCceeEEEEEecCEEEEeeEEEecchhh
Confidence 269999999999999999999999999999875444
No 49
>PTZ00280 Actin-related protein 3; Provisional
Probab=94.96 E-value=0.38 Score=52.22 Aligned_cols=89 Identities=13% Similarity=0.099 Sum_probs=57.9
Q ss_pred EEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCC---C-CCCceEEEEeCCCceeEEEeeCCeE
Q 008139 91 AVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLP---V-FDRLVLSVDIGGGSTEFVIGKRGKV 165 (576)
Q Consensus 91 ~vATsAvR~A~N~~~fl~~i~~~tG~~i-~vIsg~eEA~l~~~gv~~~l~---~-~~~~~lviDIGGGStEl~~~~~~~~ 165 (576)
++....+--..+++.+.+-+.+..+++- -+... +.++.+|.-...+ . ....++|||+|.|+|.++-+-+|.+
T Consensus 106 llte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~---~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~ 182 (414)
T PTZ00280 106 ILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQ---AVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYV 182 (414)
T ss_pred EEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecC---HHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEE
Confidence 3433445555678888888888877764 33333 3344443311000 0 2345899999999999999988887
Q ss_pred eeE--EeechhHHHHHHhh
Q 008139 166 VFC--ESVNLGHVSLSEKF 182 (576)
Q Consensus 166 ~~~--~SlplG~vrl~e~f 182 (576)
... ..+++|.-.+++.+
T Consensus 183 l~~~~~~~~~GG~~lt~~L 201 (414)
T PTZ00280 183 IGSSIKHIPLAGRDITNFI 201 (414)
T ss_pred cccceEEecCcHHHHHHHH
Confidence 643 56799988887755
No 50
>PRK05007 PII uridylyl-transferase; Provisional
Probab=94.34 E-value=0.051 Score=64.52 Aligned_cols=55 Identities=25% Similarity=0.237 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccC
Q 008139 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (576)
Q Consensus 399 r~LL~~AalLHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryhrk 454 (576)
+.+|.+||+|||||+-.. .+|.+-|+.+...--.-.||+++++..++.++++|-.
T Consensus 498 ~~lL~lAaLlHDIGKg~~-~dHs~~Ga~~a~~il~rl~l~~~~~~~v~~LV~~Hl~ 552 (884)
T PRK05007 498 KELLLLAALFHDIAKGRG-GDHSILGAQDALEFAELHGLNSRETQLVAWLVRNHLL 552 (884)
T ss_pred hhHHHHHHHHHhhcCCCC-CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 468999999999999764 4788889887755433589999999999999999954
No 51
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=94.24 E-value=0.051 Score=59.89 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhcccc----------cCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccC
Q 008139 400 EYLEAACLLHNIGHF----------TSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (576)
Q Consensus 400 ~LL~~AalLHdIG~~----------I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryhrk 454 (576)
.+|.|||+|||||+. +++++|.+-|+.+...--.=++||.+++..+..++++|-.
T Consensus 280 ~~l~lAaLLHDiGK~~t~~~~~~g~~~f~gH~~~Ga~~a~~iL~rLk~s~~~~~~V~~LV~~H~~ 344 (466)
T TIGR02692 280 LVLRWAALLHDIGKPATRRFEPDGRVSFHHHEVVGAKMVRKRMRALKYSKQMVEDVSRLVELHLR 344 (466)
T ss_pred HHHHHHHHHhhccCCCCcccccCCCcccCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc
Confidence 479999999999976 3667788888887654322479999999999999999953
No 52
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=94.17 E-value=0.048 Score=64.80 Aligned_cols=52 Identities=19% Similarity=0.085 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhc
Q 008139 400 EYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFH 452 (576)
Q Consensus 400 ~LL~~AalLHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryh 452 (576)
.+|.+||+|||||+-.. .+|.+-++.+...--.=+||+.++...++.++++|
T Consensus 498 ~lL~lAaLlHDIGKg~~-~~Hs~~Ga~~a~~i~~rl~l~~~~~~~v~~LV~~H 549 (895)
T PRK00275 498 ELLYIAGLYHDIGKGRG-GDHSELGAVDAEAFCQRHQLPAWDTRLVVWLVENH 549 (895)
T ss_pred HHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 58999999999999874 47899998887654335899999999999999999
No 53
>PTZ00004 actin-2; Provisional
Probab=94.14 E-value=1.1 Score=48.07 Aligned_cols=154 Identities=13% Similarity=0.107 Sum_probs=89.6
Q ss_pred EEEEEecccceEEEEEEEeCCC-C-EEEEEeee----------eeeeeccCC------------CcCCCCC-HHHHHHHH
Q 008139 15 FASIDMGTSSFKLLIIRAYPNG-K-FLTIDTLK----------QPVILGRDL------------SSSCSIS-TQSQARSV 69 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~-~-~~~l~~~k----------~~vrLg~~~------------~~~g~Ls-~e~i~r~~ 69 (576)
.-|||+||.++|.-.+.-+... . ...+-+.+ ..+-.|+.. .++|.+. .++++..+
T Consensus 8 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~~e~i~ 87 (378)
T PTZ00004 8 AAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDDMEKIW 87 (378)
T ss_pred eEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCHHHHHHHH
Confidence 4799999999998876321100 0 11111111 112234332 1234443 46666555
Q ss_pred HHHHHHHHHHHHCCCCcccEEEEeehh-hhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEE
Q 008139 70 ESLLMFRDIIQSHNISRDHTRAVATAA-VRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLS 147 (576)
Q Consensus 70 ~~L~~f~~~~~~~~v~~~~i~~vATsA-vR~A~N~~~fl~~i~~~tG~~i-~vIsg~eEA~l~~~gv~~~l~~~~~~~lv 147 (576)
+-+ |. +..++++...-++-|.. +--..+++.+.+-+.+..|++- -+.+. +.++.++. ....++|
T Consensus 88 ~~~--~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~---~~ls~ya~------g~~tglV 153 (378)
T PTZ00004 88 HHT--FY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQ---AVLSLYAS------GRTTGIV 153 (378)
T ss_pred HHH--HH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeecc---HHHHHHhc------CCceEEE
Confidence 531 22 23345444445556653 3334566778888888888773 33333 44444432 1245899
Q ss_pred EEeCCCceeEEEeeCCeEe--eEEeechhHHHHHHhh
Q 008139 148 VDIGGGSTEFVIGKRGKVV--FCESVNLGHVSLSEKF 182 (576)
Q Consensus 148 iDIGGGStEl~~~~~~~~~--~~~SlplG~vrl~e~f 182 (576)
+|+|.++|.++-+-+|.+. ....+++|.-.+++.+
T Consensus 154 VDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L 190 (378)
T PTZ00004 154 LDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYM 190 (378)
T ss_pred EECCCCcEEEEEEECCEEeecceeeecccHHHHHHHH
Confidence 9999999999999999876 4566788888887754
No 54
>PRK04374 PII uridylyl-transferase; Provisional
Probab=94.11 E-value=0.056 Score=63.93 Aligned_cols=53 Identities=19% Similarity=0.066 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhcc
Q 008139 400 EYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (576)
Q Consensus 400 ~LL~~AalLHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryhr 453 (576)
.+|.+|++|||||+-.. .+|.+-|+.+...--.=+||+.++...++.++++|-
T Consensus 487 ~lL~lAaLlHDIGKg~~-~dHs~~Ga~~a~~i~~Rl~l~~~~~~~v~~LV~~Hl 539 (869)
T PRK04374 487 ELLLLAGLFHDIAKGRG-GDHSELGAVDARAFCLAHRLSEGDTELVTWLVEQHL 539 (869)
T ss_pred cHHHHHHHHHhccCCCC-CChHHHhHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 58999999999999875 478888888876543358999999999999999994
No 55
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=94.04 E-value=0.27 Score=49.61 Aligned_cols=87 Identities=26% Similarity=0.350 Sum_probs=54.5
Q ss_pred EEeehhhhhcCC--hHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCeEeeE
Q 008139 91 AVATAAVRAAEN--KDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (576)
Q Consensus 91 ~vATsAvR~A~N--~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~ 168 (576)
+||-+|+=++.. -+.+.+.+++++|.+++|-.-|-| ...+|++.+ |-.+.+..++|+|||||.=++.+...-+.+
T Consensus 83 AVgiAAMVkt~~l~M~~iA~~l~~~lgv~V~igGvEAe--mAi~GALTT-PGt~~PlaIlDmG~GSTDAsii~~~g~v~~ 159 (332)
T PF08841_consen 83 AVGIAAMVKTDKLQMQMIADELEEELGVPVEIGGVEAE--MAILGALTT-PGTDKPLAILDMGGGSTDASIINRDGEVTA 159 (332)
T ss_dssp EEEEEEEEE-SS-TCHHHHHHHHHHHTSEEEEECEHHH--HHHHHHTTS-TT--SSEEEEEE-SSEEEEEEE-TTS-EEE
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHCCceEEccccHH--HHHhcccCC-CCCCCCeEEEecCCCcccHHHhCCCCcEEE
Confidence 455566655544 356789999999999999876555 455777654 334566899999999999777665444444
Q ss_pred EeechhHHHHHHh
Q 008139 169 ESVNLGHVSLSEK 181 (576)
Q Consensus 169 ~SlplG~vrl~e~ 181 (576)
..+ -|+-.+-..
T Consensus 160 iHl-AGAG~mVTm 171 (332)
T PF08841_consen 160 IHL-AGAGNMVTM 171 (332)
T ss_dssp EEE-E-SHHHHHH
T ss_pred EEe-cCCchhhHH
Confidence 444 355444433
No 56
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.79 E-value=0.075 Score=62.90 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccC
Q 008139 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (576)
Q Consensus 399 r~LL~~AalLHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryhrk 454 (576)
+.+|.+||+|||||+--.. +|.+-|+.+...--.=+||+.++...++.+++||-.
T Consensus 473 ~~~L~lAaLlHDIGKG~~~-dHs~~Ga~~a~~i~~rl~l~~~~~~~v~~LV~~Hl~ 527 (854)
T PRK01759 473 RTLLYIAALFHDIAKGRGG-DHAELGAVDMRQFAQQHGFDQREIETMAWLVQQHLL 527 (854)
T ss_pred HHHHHHHHHHHhhcCCCCC-ChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhH
Confidence 5689999999999997654 788889888766433589999999999999999953
No 57
>COG5371 Golgi nucleoside diphosphatase [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=0.076 Score=56.70 Aligned_cols=143 Identities=22% Similarity=0.177 Sum_probs=84.4
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHH----H-HHHHCCCCcc
Q 008139 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFR----D-IIQSHNISRD 87 (576)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~----~-~~~~~~v~~~ 87 (576)
+.+..||-||-.-|..|+++. +|......-.-..=+|..++.+...-+ .+......+|-..+ - .++ .+ .
T Consensus 120 qYv~~idagstgsr~~iyqfi-dge~~~~~~~~~~n~L~~~l~d~d~~t-~G~~~s~~~l~qiA~~~~p~e~~--r~--~ 193 (549)
T COG5371 120 QYVKMIDAGSTGSRSNIYQFI-DGEIEGQYLWLNTNYLEPGLSDFDTDT-VGFADSGGALLQIAFEFVPSEIR--RC--M 193 (549)
T ss_pred heecccccCCCccceeEEEee-cCccCcchhhhhhhhhccccccccccc-HHHHhhccHHHHhhhccCCHHHh--hc--C
Confidence 457899999999999999997 565544433333334444443321112 22222223322221 1 111 22 2
Q ss_pred cEEEEeehhhhh--cCChHHHHHHHHHHc----------CCcEEEeChHHHHHHHHhhhhccCC-----CC-CCceEEEE
Q 008139 88 HTRAVATAAVRA--AENKDEFVECVREKV----------GFEVDVLTGEQEAKFVYMGVLQFLP-----VF-DRLVLSVD 149 (576)
Q Consensus 88 ~i~~vATsAvR~--A~N~~~fl~~i~~~t----------G~~i~vIsg~eEA~l~~~gv~~~l~-----~~-~~~~lviD 149 (576)
.+.+.||+.+|- -.-...++.-++..+ |.-|+++.|.+|.-|...-....+. .. ...+-|+|
T Consensus 194 pi~~~~taGlrl~Gds~s~~vl~s~r~~l~~n~~f~~y~g~~ieil~G~~Eg~~a~~~m~~~ls~~g~~~~~~~T~~v~d 273 (549)
T COG5371 194 PIIVTATAGLRLLGDSRSDHVLVSTRLGLGANYAFRRYLGDLIEILNGVDEGNLADPCMNRGLSNDGTDAGTHGTGAVVD 273 (549)
T ss_pred cceEEEEeeeeecCccchhhHHHHHHHhhccccccceecccceeeccCccccchhhhhhhhhhccccCCCcccCccccee
Confidence 478899999992 122345666666655 4569999999999766544332221 11 23578999
Q ss_pred eCCCceeEEEee
Q 008139 150 IGGGSTEFVIGK 161 (576)
Q Consensus 150 IGGGStEl~~~~ 161 (576)
.|||||+|++-.
T Consensus 274 ~gg~stqll~~~ 285 (549)
T COG5371 274 CGGGSTQLLLKP 285 (549)
T ss_pred ccCcceeeeecC
Confidence 999999998643
No 58
>PRK03059 PII uridylyl-transferase; Provisional
Probab=93.72 E-value=0.084 Score=62.48 Aligned_cols=54 Identities=17% Similarity=0.103 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhcc
Q 008139 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (576)
Q Consensus 399 r~LL~~AalLHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryhr 453 (576)
+.+|.+||+|||||+--. .+|.+-++.+...--.=.||+.++...++.++++|-
T Consensus 477 ~~lL~LAaLlHDIGKg~~-~~Hs~~GA~~A~~il~rl~l~~~~~~~V~~LV~~Hl 530 (856)
T PRK03059 477 PWLLYVAALFHDIAKGRG-GDHSTLGAVDARRFCRQHGLAREDAELVVWLVEHHL 530 (856)
T ss_pred hhHHHHHHHHHhhccCCC-CCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 478999999999999765 478888888775532347999999999999999995
No 59
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=93.68 E-value=0.9 Score=46.86 Aligned_cols=153 Identities=21% Similarity=0.278 Sum_probs=89.2
Q ss_pred EEEEecccceEEEEEEEeC----CC----CEEEEEe---eeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q 008139 16 ASIDMGTSSFKLLIIRAYP----NG----KFLTIDT---LKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNI 84 (576)
Q Consensus 16 AvIDIGSNsirL~I~e~~~----~~----~~~~l~~---~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v 84 (576)
-.||||+.+..+...++.- .+ +++++.+ ++.++ +---+.+.|.|.+.++...+ +++|+. -|+
T Consensus 8 VGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~kdi~~rS~i-~FTPv~~q~~id~~alk~~v--~eeY~~----AGi 80 (473)
T COG4819 8 VGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIKKDISWRSPI-FFTPVDKQGGIDEAALKKLV--LEEYQA----AGI 80 (473)
T ss_pred eeeeccCceeeeeeeeeEEeecccccccceEEEEecceeeecce-eeeeecccCCccHHHHHHHH--HHHHHH----cCC
Confidence 5799999999877665531 11 1233321 11222 22234456788888877654 556654 255
Q ss_pred CcccEE---EEeehhhhhcCChHHHHHHHHHHcCCcEEEeCh-HHHHHHHHhhhh-ccCCC-CCCceEEEEeCCCceeEE
Q 008139 85 SRDHTR---AVATAAVRAAENKDEFVECVREKVGFEVDVLTG-EQEAKFVYMGVL-QFLPV-FDRLVLSVDIGGGSTEFV 158 (576)
Q Consensus 85 ~~~~i~---~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg-~eEA~l~~~gv~-~~l~~-~~~~~lviDIGGGStEl~ 158 (576)
.++.|- ++-|----.-+|+...+..+..-.|==|----| .-|.-..-.|.- +++.. .....+=+|||||.|.++
T Consensus 81 ~pesi~sGAvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~s 160 (473)
T COG4819 81 APESIDSGAVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYS 160 (473)
T ss_pred ChhccccccEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCcccee
Confidence 543321 122222223468888888887766632222222 234434334432 23321 123467899999999999
Q ss_pred EeeCCeEeeEEeechhH
Q 008139 159 IGKRGKVVFCESVNLGH 175 (576)
Q Consensus 159 ~~~~~~~~~~~SlplG~ 175 (576)
+|+.|++.....|.+|.
T Consensus 161 lFD~Gkv~dTaCLdiGG 177 (473)
T COG4819 161 LFDAGKVSDTACLDIGG 177 (473)
T ss_pred eecccccccceeeecCc
Confidence 99999999999998886
No 60
>PTZ00466 actin-like protein; Provisional
Probab=93.28 E-value=1.6 Score=46.80 Aligned_cols=163 Identities=13% Similarity=0.074 Sum_probs=92.5
Q ss_pred ccccCCCceEEEEEecccceEEEEEEEeCCC-C-EEEEEeeee----------eeeeccCC------------CcCCCCC
Q 008139 6 SYMQIPQTLFASIDMGTSSFKLLIIRAYPNG-K-FLTIDTLKQ----------PVILGRDL------------SSSCSIS 61 (576)
Q Consensus 6 ~~~~~~~~~~AvIDIGSNsirL~I~e~~~~~-~-~~~l~~~k~----------~vrLg~~~------------~~~g~Ls 61 (576)
++-|......-|||+||.++|.=.+.-+... . ...+-+.+. .+-.|+.. .++|.+.
T Consensus 5 ~~~~~~~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~ 84 (380)
T PTZ00466 5 YAKQLYSNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIE 84 (380)
T ss_pred hHHHhccCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeEC
Confidence 3434434446899999999997766321100 0 111211111 11233321 1234333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHCCCCcccE-EEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCC
Q 008139 62 -TQSQARSVESLLMFRDIIQSHNISRDHT-RAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLP 139 (576)
Q Consensus 62 -~e~i~r~~~~L~~f~~~~~~~~v~~~~i-~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~ 139 (576)
-+.++...+-+ |. ..++++.+. .++..+.+--..+++.+.+-+.+..+++-=.+ ...+.++.++.
T Consensus 85 dwd~~e~iw~~~--f~----~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~--~~~~~lsl~a~----- 151 (380)
T PTZ00466 85 NWNDMENIWIHV--YN----SMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFI--SIQAILSLYSC----- 151 (380)
T ss_pred CHHHHHHHHHHH--Hh----hcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEE--ecchHHHHHhc-----
Confidence 36666666654 42 235543333 33444445445667778888888878754322 23444444432
Q ss_pred CCCCceEEEEeCCCceeEEEeeCCeEee--EEeechhHHHHHHhh
Q 008139 140 VFDRLVLSVDIGGGSTEFVIGKRGKVVF--CESVNLGHVSLSEKF 182 (576)
Q Consensus 140 ~~~~~~lviDIGGGStEl~~~~~~~~~~--~~SlplG~vrl~e~f 182 (576)
...+++|+|+|-++|.++-+-+|.+.. ...+++|.-.+++.+
T Consensus 152 -g~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L 195 (380)
T PTZ00466 152 -GKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYL 195 (380)
T ss_pred -CCceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHH
Confidence 224589999999999999998888763 456789988887754
No 61
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=93.20 E-value=0.21 Score=52.16 Aligned_cols=110 Identities=15% Similarity=0.278 Sum_probs=64.3
Q ss_pred chhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCC-------chhhhHHHHHcCC
Q 008139 360 VKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKG-------YHKQSCHIIMNGD 432 (576)
Q Consensus 360 ~~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~~~-------h~~Hs~yiI~ns~ 432 (576)
.+|..+|+.++..+ ....|| ++.+-+++..||.|||||+--=+++ =..+-+-+....+
T Consensus 187 g~H~~Rv~~~~~~l----Ae~lgL-----------se~~v~~i~~AapLHDIGKvaiPD~ILlKpg~Lt~ee~~imk~H~ 251 (360)
T COG3437 187 GDHLERVAQYSELL----AELLGL-----------SEEEVDLIKKAAPLHDIGKVAIPDSILLKPGKLTSEEFEIMKGHP 251 (360)
T ss_pred hhHHHHHHHHHHHH----HHHhCC-----------CHHHHHHHHhccchhhcccccCChHHhcCCCCCCHHHHHHHhcch
Confidence 36888888888754 444443 5566789999999999998543221 1112222333332
Q ss_pred CCCCC---CHHH--HHHHHHHHHhccCCCCCCCchhhccCChHHHHHHHHHHHHHHHHHHhcc
Q 008139 433 HLYGY---STDE--IKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQ 490 (576)
Q Consensus 433 ~l~G~---s~~E--~~~iA~i~ryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~ 490 (576)
.+|. ...+ ....|.||++|.-..... -|...|.-++... .|.|+.+|+.+|.
T Consensus 252 -~~G~~il~~s~~~mq~a~eIa~~HHErwDGs--GYPdgLkGd~IPl---~arI~aiADvfDA 308 (360)
T COG3437 252 -ILGAEILKSSERLMQVAAEIARHHHERWDGS--GYPDGLKGDEIPL---SARIVAIADVFDA 308 (360)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhhccCCC--CCCCCCCccccch---hHHHHHHHHHHHH
Confidence 4443 2223 456777999996665442 2334566555544 4566666666553
No 62
>PRK05092 PII uridylyl-transferase; Provisional
Probab=93.13 E-value=0.13 Score=61.73 Aligned_cols=54 Identities=24% Similarity=0.178 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhcc
Q 008139 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (576)
Q Consensus 399 r~LL~~AalLHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryhr 453 (576)
+.+|.+||+|||||+-- ..+|.+-++.+...--.=.||+.+++..++.++++|-
T Consensus 530 ~~~L~lAaLlHDIGKg~-~~dHs~~Ga~~a~~~~~rl~l~~~~~~~v~~LV~~Hl 583 (931)
T PRK05092 530 RRALYVAVLLHDIAKGR-PEDHSIAGARIARRLCPRLGLSPAETETVAWLVEHHL 583 (931)
T ss_pred HHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 56899999999999975 4578888888876543358999999999999999994
No 63
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=92.50 E-value=0.16 Score=60.24 Aligned_cols=54 Identities=26% Similarity=0.209 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhcc
Q 008139 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (576)
Q Consensus 399 r~LL~~AalLHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryhr 453 (576)
+.+|.+||+|||||+-- ..+|++-|+.+..+--.=+||+.++...++.++++|-
T Consensus 465 ~~~L~lAaLlHDiGKg~-~~~H~~~Ga~~a~~~~~rl~l~~~~~~~v~~LV~~Hl 518 (850)
T TIGR01693 465 PELLYLAALLHDIGKGR-GGDHSVLGAEDARDVCPRLGLDRPDTELVAWLVRNHL 518 (850)
T ss_pred HHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 57899999999999964 4678898998876632247999999999999999995
No 64
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=92.34 E-value=0.2 Score=54.23 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=43.6
Q ss_pred HHHHHHHHhhccccc-------CCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhcc
Q 008139 401 YLEAACLLHNIGHFT-------SKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHR 453 (576)
Q Consensus 401 LL~~AalLHdIG~~I-------~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryhr 453 (576)
.|++||+|||+|+.. ++++|.+-|..++..--.=++++.+.+..+..+++||-
T Consensus 247 ~lr~AaLlHDlGK~~t~~~~~~~~~gH~~~Ga~~a~~i~~RLk~p~~~~~~~~~lv~~H~ 306 (409)
T PRK10885 247 DVRFAALCHDLGKGLTPPEEWPRHHGHEPRGVKLVEQLCQRLRVPNECRDLALLVAEEHD 306 (409)
T ss_pred HHHHHHHhccccCCCCCcccCcccCchhHhHHHHHHHHHHHcCcCHHHHHHHHHHHHHhh
Confidence 689999999999976 45578888888875542247999999999999999995
No 65
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=92.32 E-value=0.62 Score=44.66 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=38.9
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHH
Q 008139 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDII 79 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~ 79 (576)
+++|||||.++++++.+..++|.++++.....+ ..|+ .+|.+.+ ++.+.+++++..+.+
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~---s~gi-~~G~I~d--~~~~~~~I~~ai~~a 59 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVP---SRGI-RKGVIVD--IEAAARAIREAVEEA 59 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEec---CCCc-cCcEEEC--HHHHHHHHHHHHHHH
Confidence 478999999999999998766778888655443 3343 3465554 444444554444433
No 66
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=92.31 E-value=0.71 Score=46.04 Aligned_cols=79 Identities=14% Similarity=0.286 Sum_probs=46.9
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEee
Q 008139 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (576)
+.+|||||.|+|..+++ .+|++ +...+.+......-......+++.+-+.+ ..-++++++.++++..+|.+++.
T Consensus 2 ~lgiDiGTts~K~~l~d--~~g~i--v~~~~~~~~~~~~~~g~~e~d~~~~~~~~--~~~~~~~~~~~~~~~~~I~aI~i 75 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFD--EDGKI--VASASRPYPYYTPEPGWAEQDPDEIWEAI--CEALKELLSQAGIDPEQIKAIGI 75 (245)
T ss_dssp EEEEEECSSEEEEEEEE--TTSCE--EEEEEEEETEBCSSTTEEEE-HHHHHHHH--HHHHHHHHHHCTSCGGGEEEEEE
T ss_pred EEEEEEcccceEEEEEe--CCCCE--EEEEEEeeeeccccccccccChHHHHHHH--HHHHHHHHhhcCcccceeEEEEe
Confidence 68999999999999998 35654 43344333332221111233444443332 22345555666777789999999
Q ss_pred hhhhh
Q 008139 95 AAVRA 99 (576)
Q Consensus 95 sAvR~ 99 (576)
++.+.
T Consensus 76 s~~~~ 80 (245)
T PF00370_consen 76 SGQGH 80 (245)
T ss_dssp EE-SS
T ss_pred ccccC
Confidence 88765
No 67
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=92.12 E-value=0.34 Score=51.29 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=34.0
Q ss_pred CCceEEEEeCCCceeEEEeeCCeEeeEEe--echhHHHHHHh
Q 008139 142 DRLVLSVDIGGGSTEFVIGKRGKVVFCES--VNLGHVSLSEK 181 (576)
Q Consensus 142 ~~~~lviDIGGGStEl~~~~~~~~~~~~S--lplG~vrl~e~ 181 (576)
++..+++|||||+|+++.++++++....| ++.|...+.+.
T Consensus 184 ~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~ 225 (344)
T PRK13917 184 EGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKR 225 (344)
T ss_pred cCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHH
Confidence 34579999999999999999999976666 99999888764
No 68
>PTZ00452 actin; Provisional
Probab=91.85 E-value=2 Score=45.95 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=62.2
Q ss_pred CCCCcccEEEEeeh-hhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEe
Q 008139 82 HNISRDHTRAVATA-AVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (576)
Q Consensus 82 ~~v~~~~i~~vATs-AvR~A~N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~ 160 (576)
.++++.+.-++-|+ .+.-..|++.+.+-+.+..+++-=.+ ...+.++.++. ...+++|+|+|-|+|.++-+
T Consensus 94 l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~--~~~~~lslya~------g~~tglVVDiG~~~t~v~PV 165 (375)
T PTZ00452 94 LCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYI--SNEAVLSLYTS------GKTIGLVVDSGEGVTHCVPV 165 (375)
T ss_pred cCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEE--echHHHHHHHC------CCceeeeecCCCCcceEEEE
Confidence 45655444445555 44445678888888888888764332 23344444431 23458999999999999999
Q ss_pred eCCeEe--eEEeechhHHHHHHhh
Q 008139 161 KRGKVV--FCESVNLGHVSLSEKF 182 (576)
Q Consensus 161 ~~~~~~--~~~SlplG~vrl~e~f 182 (576)
-+|.+. ....+++|.-.+++.+
T Consensus 166 ~dG~~l~~~~~r~~~gG~~lt~~L 189 (375)
T PTZ00452 166 FEGHQIPQAITKINLAGRLCTDYL 189 (375)
T ss_pred ECCEEeccceEEeeccchHHHHHH
Confidence 998776 3466788988887754
No 69
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=91.32 E-value=0.24 Score=48.99 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=40.4
Q ss_pred chhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCC---chhhhHHHHHcC
Q 008139 360 VKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKG---YHKQSCHIIMNG 431 (576)
Q Consensus 360 ~~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~~~---h~~Hs~yiI~ns 431 (576)
..|...|+.+|..| +...|. +-.+...||+|||||..+-+.. |..-++-+...-
T Consensus 38 l~H~~~Va~lA~~I----a~~~g~--------------D~~l~~~aaLLHDIg~~~~~~~~~~h~~~gae~a~~~ 94 (222)
T COG1418 38 LEHSLRVAYLAYRI----AEEEGV--------------DPDLALRAALLHDIGKAIDHEPGGSHAEIGAEIARKF 94 (222)
T ss_pred HHHHHHHHHHHHHH----HHHcCC--------------CHHHHHHHHHHHhhccccccCCccchHHHHHHHHHHH
Confidence 38999999999975 443332 3479999999999999998874 566666665444
No 70
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=91.10 E-value=3.7 Score=43.93 Aligned_cols=92 Identities=21% Similarity=0.199 Sum_probs=55.9
Q ss_pred CCCCcccEEEEeehhhh-hcCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEE
Q 008139 82 HNISRDHTRAVATAAVR-AAENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (576)
Q Consensus 82 ~~v~~~~i~~vATsAvR-~A~N~~~fl~~i~~~tG~~-i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~ 159 (576)
.++++.+..++-|.... ...-++.+.+-+.+..|++ +-+++. +.++.++.- ...++|||+|.++|.++-
T Consensus 88 l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~---~~~a~~~~g------~~tglVVD~G~~~t~v~p 158 (393)
T PF00022_consen 88 LKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPS---PLLALYASG------RTTGLVVDIGYSSTSVVP 158 (393)
T ss_dssp T-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEH---HHHHHHHTT------BSSEEEEEESSS-EEEEE
T ss_pred cccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeec---ccccccccc------cccccccccceeeeeeee
Confidence 34544455556665432 2344566777888887876 334443 333333322 235899999999999999
Q ss_pred eeCCeEee--EEeechhHHHHHHhh
Q 008139 160 GKRGKVVF--CESVNLGHVSLSEKF 182 (576)
Q Consensus 160 ~~~~~~~~--~~SlplG~vrl~e~f 182 (576)
+-+|.+.. ...+|+|.-.+++.+
T Consensus 159 V~dG~~~~~~~~~~~~GG~~lt~~l 183 (393)
T PF00022_consen 159 VVDGYVLPHSIKRSPIGGDDLTEYL 183 (393)
T ss_dssp EETTEE-GGGBEEES-SHHHHHHHH
T ss_pred eeeccccccccccccccHHHHHHHH
Confidence 99998864 467899998887754
No 71
>PTZ00281 actin; Provisional
Probab=90.66 E-value=2.3 Score=45.55 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=59.4
Q ss_pred CCCCcccEEEEeehh-hhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEe
Q 008139 82 HNISRDHTRAVATAA-VRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (576)
Q Consensus 82 ~~v~~~~i~~vATsA-vR~A~N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~ 160 (576)
.++++.+.-++-|+. +--..+++.+.+-+.+..+++-=-+ ...+.++.++. ...+++|+|+|-++|.++-+
T Consensus 95 l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~--~~~~~ls~ya~------g~~tglVVDiG~~~t~v~PV 166 (376)
T PTZ00281 95 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYV--AIQAVLSLYAS------GRTTGIVMDSGDGVSHTVPI 166 (376)
T ss_pred ccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEe--eccHHHHHHhc------CCceEEEEECCCceEEEEEE
Confidence 456554445555554 3334566777777788877763222 22333333331 22458999999999999988
Q ss_pred eCCeEe--eEEeechhHHHHHHhh
Q 008139 161 KRGKVV--FCESVNLGHVSLSEKF 182 (576)
Q Consensus 161 ~~~~~~--~~~SlplG~vrl~e~f 182 (576)
-+|.+. ....+++|.-.+++.+
T Consensus 167 ~dG~~~~~~~~~~~~GG~~lt~~L 190 (376)
T PTZ00281 167 YEGYALPHAILRLDLAGRDLTDYM 190 (376)
T ss_pred EecccchhheeeccCcHHHHHHHH
Confidence 888776 4566788888777755
No 72
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=89.87 E-value=1.8 Score=50.82 Aligned_cols=82 Identities=18% Similarity=0.116 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhccccc-------------------------
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFT------------------------- 415 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I------------------------- 415 (576)
+|...|+++|.+ +.+.+|+. ...+++++|++|||+|++-
T Consensus 678 eHl~~va~lA~~----fa~~~gl~------------~~~~~~~laGllHDlGK~~~~FQ~yL~~~~~p~~~~~~~~~~~~ 741 (844)
T TIGR02621 678 DHLDNVFEVAKN----FVAKLGLG------------DLDKAVRQAARLHDLGKQRPRFQTMLGNRSYPLAKLAKSGPWAA 741 (844)
T ss_pred HHHHHHHHHHHH----HHHHcCch------------HHHHHHHHHHHhcccccCCHHHHHHhcCCCCccccccccccchh
Confidence 688888888876 34444431 1235689999999999973
Q ss_pred ----CCCCchhhhHHHHHcCCCCCCCCHHHHH-HHHHHHHhccCCCCC
Q 008139 416 ----SKKGYHKQSCHIIMNGDHLYGYSTDEIK-LIALLTRFHRKKFPR 458 (576)
Q Consensus 416 ----~~~~h~~Hs~yiI~ns~~l~G~s~~E~~-~iA~i~ryhrk~~~~ 458 (576)
..+.|-.+|..-+.|.+....+++.++. ++=+++.+|+...|-
T Consensus 742 ~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~lvl~liaaHHg~~rp~ 789 (844)
T TIGR02621 742 KIARSMYRHEKGSLIDVANAPGFSMLSEELSDLVLHLVATHHGRNRPH 789 (844)
T ss_pred hhhhhhhcCCchhHHhhhccccccccChhHHHHHHHHHHHhccCCCCC
Confidence 2356666777777775445667777765 455577888777663
No 73
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=89.73 E-value=4.6 Score=41.61 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=66.2
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEE-EE
Q 008139 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTR-AV 92 (576)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~-~v 92 (576)
.+..|||||-+++.++.+ + + +++.. ....+|.=..++. .++ +.+++++.|.+..++. ++
T Consensus 33 ~~~GIDiGStt~K~Vlld-~--~--~i~~~---------~~~~tg~~~~~~a---~~~---l~~~l~~~g~~~~~v~~~~ 92 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVC-D--G--ELYGY---------NSMRTGNNSPDSA---KNA---LQGIMDKIGMKLEDINYVV 92 (293)
T ss_pred EEEEEEeCchhEEEEEEe-C--C--EEEEE---------EeecCCCCHHHHH---HHH---HHHHHHHcCCcccceEEEE
Confidence 589999999999999996 2 3 23322 2223332223332 233 3344445565433344 56
Q ss_pred eehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEe-eCCeEe
Q 008139 93 ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG-KRGKVV 166 (576)
Q Consensus 93 ATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~-~~~~~~ 166 (576)
+|--=|..-. |.+ ++ -.|-.--..|+....|. +-..|+||||=-+-++.. ++|++.
T Consensus 93 ~TGyGr~~~~---~a~----------~~---v~EItaha~Ga~~~~pp--~v~tIIDIGGQDsK~I~~d~~G~v~ 149 (293)
T TIGR03192 93 GTGYGRVNVP---FAH----------KA---ITEIACHARGANYMGGN--AVRTILDMGGQDCKAIHCDEKGKVT 149 (293)
T ss_pred EECcchhhcc---hhh----------cc---eeeHHHHHHHHHHhcCC--CCCEEEEeCCCceEEEEEcCCCcEe
Confidence 7776664321 211 12 23555666777766531 224899999999999887 577654
No 74
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=89.55 E-value=0.69 Score=48.36 Aligned_cols=94 Identities=17% Similarity=0.142 Sum_probs=56.7
Q ss_pred EEEEeehhhhhcCChHHHHHHHHHH--cC-------CcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEE
Q 008139 89 TRAVATAAVRAAENKDEFVECVREK--VG-------FEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (576)
Q Consensus 89 i~~vATsAvR~A~N~~~fl~~i~~~--tG-------~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~ 159 (576)
..++|.=.-.-...++.|.+.+... .| -+|.|+....=|.+.++-=.......+.+.+|+||||++|.++.
T Consensus 104 ~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~ 183 (320)
T TIGR03739 104 QLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLV 183 (320)
T ss_pred EEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeeh
Confidence 3455543333233456666655422 01 13566776665655554200011113455799999999999999
Q ss_pred eeCCeEee--EEeechhHHHHHHhh
Q 008139 160 GKRGKVVF--CESVNLGHVSLSEKF 182 (576)
Q Consensus 160 ~~~~~~~~--~~SlplG~vrl~e~f 182 (576)
++++++.. +.|++.|+..+.+..
T Consensus 184 ~~~~~~~~~~s~s~~~G~~~~~~~I 208 (320)
T TIGR03739 184 ARGMRLVQKRSGSVNGGMSDIYRLL 208 (320)
T ss_pred ccCCEEcccccCCchhHHHHHHHHH
Confidence 99998875 556899998887754
No 75
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=89.49 E-value=8.4 Score=39.87 Aligned_cols=144 Identities=15% Similarity=0.100 Sum_probs=86.5
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEE
Q 008139 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (576)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (576)
..+..||||.+++++.+++.. |.. +.+.+.++ -.. . -.++.++...+.++++.+... ....+..|
T Consensus 6 ~~~lgidIggt~i~~~l~d~~--g~~--l~~~~~~~--~~~---~--~~~~~~~~i~~~i~~~~~~~~----~~~~~iGI 70 (314)
T COG1940 6 MTVLGIDIGGTKIKVALVDLD--GEI--LLRERIPT--PTP---D--PEEAILEAILALVAELLKQAQ----GRVAIIGI 70 (314)
T ss_pred cEEEEEEecCCEEEEEEECCC--CcE--EEEEEEec--CCC---C--chhHHHHHHHHHHHHHHHhcC----CcCceEEE
Confidence 468999999999999999764 433 33333321 111 0 114667777888887776542 11234555
Q ss_pred eehhhhhcCC--------------hHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEE
Q 008139 93 ATAAVRAAEN--------------KDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (576)
Q Consensus 93 ATsAvR~A~N--------------~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~ 158 (576)
+-+.--...| .-.|.+.+++.+|++|.|-+...=+-+.-.=.-... ..++.+.+-+|.| +.-.
T Consensus 71 gi~~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~Pv~veNDan~aalaE~~~g~~~--~~~~~~~i~~gtG-IG~g 147 (314)
T COG1940 71 GIPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLGLPVFVENDANAAALAEAWFGAGR--GIDDVVYITLGTG-IGGG 147 (314)
T ss_pred EeccceeccCCcEEeecCCCCccccccHHHHHHHHHCCCEEEecHHHHHHHHHHHhCCCC--CCCCEEEEEEccc-eeEE
Confidence 5443322222 255899999999999999887766655432111211 2245788887766 4444
Q ss_pred EeeCCeEeeEEeechh
Q 008139 159 IGKRGKVVFCESVNLG 174 (576)
Q Consensus 159 ~~~~~~~~~~~SlplG 174 (576)
++-+|++....+..-|
T Consensus 148 iv~~g~l~~G~~g~ag 163 (314)
T COG1940 148 IIVNGKLLRGANGNAG 163 (314)
T ss_pred EEECCEEeecCCCccc
Confidence 6677777765444333
No 76
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=89.38 E-value=0.7 Score=48.90 Aligned_cols=108 Identities=16% Similarity=0.208 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCC------------------CCchh
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK------------------KGYHK 422 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~------------------~~h~~ 422 (576)
.|+.+|+.+|..| .+..|+ ++...+.|.+||+|||||+--=+ +.|..
T Consensus 151 ~Hs~~va~~a~~i----a~~lgl-----------~~~~i~~l~~aalLHDIGKi~ip~~IL~K~g~Lt~eE~~~ik~H~~ 215 (344)
T COG2206 151 GHSVRVAELAEAI----AKKLGL-----------SEEKIEELALAGLLHDIGKIGIPDSILNKPGKLTEEEFEIIKKHPI 215 (344)
T ss_pred HHHHHHHHHHHHH----HHHcCC-----------CHHHHHHHHHHHHHhhcccccCCHHHhCCCCCCCHHHHHHHHhchH
Confidence 6999999999874 444443 44566899999999999985332 34555
Q ss_pred hhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCCCCCCCchhhccCChHHHHHHHHHHHHHHHHHHhccccCCC
Q 008139 423 QSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDCVN 495 (576)
Q Consensus 423 Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~~~~ 495 (576)
.|+.++.+.+ -|.. .+..++.+|.-..... -|..-|..++ +-..|.|+-+|+..|.-....
T Consensus 216 ~g~~iL~~~~---~~~~----~~~~~~l~HHEr~DGt--GYP~GL~Gee---I~l~aRIiAVADvydAlts~R 276 (344)
T COG2206 216 YGYDILKDLP---EFLE----SVRAVALRHHERWDGT--GYPRGLKGEE---IPLEARIIAVADVYDALTSDR 276 (344)
T ss_pred HHHHHHHhcc---cccH----HHHHHHHHhhhccCCC--CCCCCCCccc---CChHhHHHHHhhHHHHHhcCC
Confidence 5555554442 2222 2223333343222221 1122333333 334678888888887555433
No 77
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=88.93 E-value=1.9 Score=41.13 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=28.6
Q ss_pred HHHHHHHhhcccccC-----------CCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHH
Q 008139 402 LEAACLLHNIGHFTS-----------KKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLT 449 (576)
Q Consensus 402 L~~AalLHdIG~~I~-----------~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ 449 (576)
+-+||+|||||..++ ..+|..-++.+|... |+.+=..+|..-+
T Consensus 46 lvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~-----F~~~V~~lV~~Hv 99 (179)
T TIGR03276 46 LIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLREL-----FSPSVTEPIRLHV 99 (179)
T ss_pred HHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHH-----cCHHHHHHHHHHH
Confidence 689999999999887 445666667776422 5665444444433
No 78
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=87.93 E-value=1.5 Score=45.66 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCC--------------chhhhHH
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKG--------------YHKQSCH 426 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~~~--------------h~~Hs~y 426 (576)
.|.-.|+++|..+.+. +. .-+|.||-++|+|||||+-..+++ |---+..
T Consensus 162 eHtl~v~~~~~~l~~~----y~-------------~~n~dll~agalLHDiGKi~E~~~~~~~~yT~eG~LlGHi~lg~~ 224 (314)
T PRK13480 162 YHVVSMLRLAKSICDL----YP-------------SLNKDLLYAGIILHDLGKVIELSGPVSTTYTLEGNLLGHISIMVN 224 (314)
T ss_pred HHHHHHHHHHHHHHHh----cc-------------ccCHHHHHHHHHHHHhhhHHHhcCCCccCccccCEeccHHHHHHH
Confidence 5777777888776432 21 123679999999999998655442 2222444
Q ss_pred HHHcC-CCCCCCCHHHHHHH-HHHHHhccCCCCCCCchhhccCChHHHHHHHHHHHHHHHHHHhcccc
Q 008139 427 IIMNG-DHLYGYSTDEIKLI-ALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQND 492 (576)
Q Consensus 427 iI~ns-~~l~G~s~~E~~~i-A~i~ryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~ 492 (576)
+|... . -.|+..++...| -.|.++|++.-... +. .|.-.+ |.+|..++.||..-
T Consensus 225 ~i~~~~~-~l~~~~e~~~~L~H~ILSHHG~~E~GS--Pv----~P~t~E-----A~iLh~~D~lDAkl 280 (314)
T PRK13480 225 EIAKAAD-ELQIDGEEVLILQHMVLSHHGKAEWGS--PK----PPLVKE-----AEILHYIDNIDAKM 280 (314)
T ss_pred HHHHHHH-HcCCCHHHHHHHHhhhhccCCccccCC--CC----CCCCHH-----HHHHHHHHhhhhHH
Confidence 44321 1 136666555544 44667776432110 00 011111 55788888888554
No 79
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=87.93 E-value=0.46 Score=51.31 Aligned_cols=55 Identities=16% Similarity=0.076 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhccccc---------CCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccC
Q 008139 400 EYLEAACLLHNIGHFT---------SKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRK 454 (576)
Q Consensus 400 ~LL~~AalLHdIG~~I---------~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryhrk 454 (576)
..++|||+|||+|+.. ++++|.+.|..++..--.=+.++.+.+..+..+++||..
T Consensus 247 l~lR~AaLlHDiGK~~t~~~~~~~~~~~gHe~~G~~~a~~i~~RLk~pn~~~~~~~~li~~H~~ 310 (417)
T PRK13298 247 IDIRFSYLCQFLGSMIPINQIKRNYKKIFFDKYAASLIKNLCKRFKIPSYIRNIAVLNTGFYFF 310 (417)
T ss_pred HHHHHHHHHhhhcCCCCCCccCCCCcccChhHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh
Confidence 4689999999999853 467778888887755422368999999999999999954
No 80
>CHL00094 dnaK heat shock protein 70
Probab=87.68 E-value=5.8 Score=45.47 Aligned_cols=72 Identities=24% Similarity=0.382 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCeEe-----eEEeechhHHHHH
Q 008139 106 FVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVV-----FCESVNLGHVSLS 179 (576)
Q Consensus 106 fl~~i~~~tG~~i-~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~-----~~~SlplG~vrl~ 179 (576)
.+..+-+..|+++ ++|+...=|-+.| |... ..+...+|+|+|||++.+++++-+... .....++|.--+.
T Consensus 153 a~~~Aa~~AGl~v~~li~EptAAAlay-~~~~---~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D 228 (621)
T CHL00094 153 ATKDAGKIAGLEVLRIINEPTAASLAY-GLDK---KNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFD 228 (621)
T ss_pred HHHHHHHHcCCceEEEeccHHHHHHHh-cccc---CCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHH
Confidence 3444455779995 6888888888776 3221 123568999999999999997643222 2344678876665
Q ss_pred Hh
Q 008139 180 EK 181 (576)
Q Consensus 180 e~ 181 (576)
+.
T Consensus 229 ~~ 230 (621)
T CHL00094 229 KK 230 (621)
T ss_pred HH
Confidence 53
No 81
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=87.40 E-value=7.3 Score=44.49 Aligned_cols=116 Identities=18% Similarity=0.220 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHC-CCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhc
Q 008139 59 SISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQ 136 (576)
Q Consensus 59 ~Ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i-~vIsg~eEA~l~~~gv~~ 136 (576)
.++++.+ +-..|+.+++.++.+ |.+.. .+|-|==.---.+....+..+-+..|+++ ++|+...=|-+.| |.-.
T Consensus 103 ~~~p~ei--~a~iL~~lk~~a~~~lg~~v~--~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-~~~~ 177 (599)
T TIGR01991 103 TVTPVEV--SAEILKKLKQRAEESLGGDLV--GAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAY-GLDK 177 (599)
T ss_pred EEcHHHH--HHHHHHHHHHHHHHHhCCCcc--eEEEEECCCCCHHHHHHHHHHHHHcCCCceEEecCHHHHHHHH-hhcc
Confidence 4455433 345677776666543 43322 22322111111233444566666789997 5888888887776 3322
Q ss_pred cCCCCCCceEEEEeCCCceeEEEee--CCeEe---eEEeechhHHHHHHhh
Q 008139 137 FLPVFDRLVLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSEKF 182 (576)
Q Consensus 137 ~l~~~~~~~lviDIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~e~f 182 (576)
. .+...+|+|+|||++.+++++ ++.+. .....++|.--+.+.+
T Consensus 178 ~---~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l 225 (599)
T TIGR01991 178 A---SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHAL 225 (599)
T ss_pred C---CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHH
Confidence 1 235689999999999999876 44332 1223578887776643
No 82
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=86.51 E-value=4.5 Score=46.41 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHC-CCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceE
Q 008139 69 VESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVL 146 (576)
Q Consensus 69 ~~~L~~f~~~~~~~-~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i-~vIsg~eEA~l~~~gv~~~l~~~~~~~l 146 (576)
-..|+..++.++.+ |-+..++ +++-=|-=. .+....+..+-+..|+++ ++|+...=|-+.| |.... .+...+
T Consensus 115 a~iL~~lk~~ae~~~g~~v~~~-VItVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y-~~~~~---~~~~vl 188 (627)
T PRK00290 115 AMILQKLKKDAEDYLGEKVTEA-VITVPAYFN-DAQRQATKDAGKIAGLEVLRIINEPTAAALAY-GLDKK---GDEKIL 188 (627)
T ss_pred HHHHHHHHHHHHHHhCCCCceE-EEEECCCCC-HHHHHHHHHHHHHcCCceEEEecchHHHHHHh-hhccC---CCCEEE
Confidence 34555666555443 4332222 222222211 223333445555679995 6888888877766 33221 245689
Q ss_pred EEEeCCCceeEEEeeCC--eEe---eEEeechhHHHHHH
Q 008139 147 SVDIGGGSTEFVIGKRG--KVV---FCESVNLGHVSLSE 180 (576)
Q Consensus 147 viDIGGGStEl~~~~~~--~~~---~~~SlplG~vrl~e 180 (576)
|+|+|||+|.+++++-+ .+. .....++|..-+.+
T Consensus 189 V~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~ 227 (627)
T PRK00290 189 VYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQ 227 (627)
T ss_pred EEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHH
Confidence 99999999999987633 221 12335677765554
No 83
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.33 E-value=0.56 Score=53.86 Aligned_cols=54 Identities=22% Similarity=0.141 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhc
Q 008139 398 DLEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFH 452 (576)
Q Consensus 398 ~r~LL~~AalLHdIG~~I~~~~h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryh 452 (576)
++.+|..||++||||+-= ...|..-++-....-=.-.|++.+|..++|.+++.|
T Consensus 482 ~~elLylAaLfHDIaKGR-ggDHs~lGA~~a~~fc~~hGL~~~e~~lvaWLVe~H 535 (867)
T COG2844 482 KRELLYLAALFHDIAKGR-GGDHSILGAEDARRFCERHGLNSRETELVAWLVENH 535 (867)
T ss_pred ChhHHHHHHHHHHhhcCC-CCchHHhhHHHHHHHHHHcCCCHHHhHHHHHHHHHH
Confidence 467999999999999875 455677777776443236999999999999999988
No 84
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=86.14 E-value=11 Score=35.26 Aligned_cols=140 Identities=17% Similarity=0.097 Sum_probs=85.6
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCC--C------Cccc
Q 008139 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHN--I------SRDH 88 (576)
Q Consensus 17 vIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~--v------~~~~ 88 (576)
.||||.+++++.+++.. | +++.+.+.++. .-.++.++.+.+.++++.......+ + +...
T Consensus 1 gidig~~~i~~~l~d~~--g--~ii~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~~~gIgi~~pG~v~~~~ 67 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLD--G--EIIYSESIPTP---------TSPEELLDALAELIERLLADYGRSGIGISVPGIVDSEK 67 (179)
T ss_dssp EEEEESSEEEEEEEETT--S--CEEEEEEEEHH---------SSHHHHHHHHHHHHHHHHHHHTCEEEEEEESSEEETTT
T ss_pred CEEECCCEEEEEEECCC--C--CEEEEEEEECC---------CCHHHHHHHHHHHHHHHHhhcccccEEEeccccCcCCC
Confidence 48999999999999864 4 34666655544 1135667777777777766543111 1 0000
Q ss_pred EEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCeEeeE
Q 008139 89 TRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (576)
Q Consensus 89 i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~ 168 (576)
-.+.++..-.-.| -.+.+.++++++++|.+.+.-.=+-+...-.-... ..++.+.+.+|-| +...++.+|++...
T Consensus 68 -g~i~~~~~~~~~~-~~l~~~l~~~~~~pv~i~Nd~~~~a~ae~~~~~~~--~~~~~~~l~ig~G-iG~~ii~~g~i~~G 142 (179)
T PF00480_consen 68 -GRIISSPNPGWEN-IPLKEELEERFGVPVIIENDANAAALAEYWFGAAK--DCDNFLYLYIGTG-IGAGIIINGKIYRG 142 (179)
T ss_dssp -TEEEECSSGTGTT-CEHHHHHHHHHTSEEEEEEHHHHHHHHHHHHSTTT--TTSSEEEEEESSS-EEEEEEETTEEETT
T ss_pred -CeEEecCCCCccc-CCHHHHhhcccceEEEEecCCCcceeehhhcCccC--CcceEEEEEeecC-CCcceecccccccC
Confidence 0112222222333 55788999999999999988776555543222221 2246899999886 67778888888764
Q ss_pred Eeechh
Q 008139 169 ESVNLG 174 (576)
Q Consensus 169 ~SlplG 174 (576)
.+-..|
T Consensus 143 ~~~~aG 148 (179)
T PF00480_consen 143 SNGFAG 148 (179)
T ss_dssp TTS-TT
T ss_pred CCcccc
Confidence 433333
No 85
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=85.34 E-value=5.2 Score=40.57 Aligned_cols=118 Identities=17% Similarity=0.206 Sum_probs=63.8
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccE-EEE
Q 008139 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHT-RAV 92 (576)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i-~~v 92 (576)
.++-||+||-+++.++.+.+ ++....+.....+ . ++.=+ .+.+-++| .+++++.|++..++ .++
T Consensus 2 ~~~GIDiGStttK~Vlid~~-~~~~~~~~~~~~~--~------~~~~~---~~~~~~~l---~~~~~~~g~~~~~i~~i~ 66 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVD-GDKEECLAKRNDR--I------RQRDP---FKLAEDAY---DDLLEEAGLAAADVAYCA 66 (262)
T ss_pred eEEEEEcCcccEEEEEEecC-CCeeEEEEEEEec--C------CCCCH---HHHHHHHH---HHHHHHcCCChhheEEEE
Confidence 37899999999999999742 2223333222111 1 01111 22233333 34444556632233 456
Q ss_pred eehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEe-eCCeEe
Q 008139 93 ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG-KRGKVV 166 (576)
Q Consensus 93 ATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~-~~~~~~ 166 (576)
+|--=|.. .|.+ +.-. |-.--..|+....| +. ..|+||||=-+-++.. ++|++.
T Consensus 67 ~TGYGR~~----~~a~------~~vt-------EIt~ha~GA~~~~p--~~-~tIiDIGGQD~K~I~~~~~G~v~ 121 (262)
T TIGR02261 67 TTGEGESL----AFHT------GHFY-------SMTTHARGAIYLNP--EA-RAVLDIGALHGRAIRMDERGKVE 121 (262)
T ss_pred EECCchhh----hhhc------CCee-------EEeHHHHHHHHHCC--CC-CEEEEeCCCceEEEEEcCCCcEe
Confidence 67665543 2221 1112 33344566665554 22 4999999999998887 567664
No 86
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=85.22 E-value=2.6 Score=44.26 Aligned_cols=36 Identities=36% Similarity=0.481 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccc
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF 414 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~ 414 (576)
.|+--|+.+|..+...|. + + ..++++||++||||..
T Consensus 65 ~Hsl~V~~iar~~~~~l~----~-----------~---~~l~~aaaL~HDiGh~ 100 (336)
T PRK01286 65 THTLEVAQIARTIARALR----L-----------N---EDLTEAIALGHDLGHT 100 (336)
T ss_pred HHHHHHHHHHHHHHHHhC----C-----------C---HHHHHHHHHHhcCCCC
Confidence 799999999999877653 1 1 2689999999999953
No 87
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=84.94 E-value=6.2 Score=44.74 Aligned_cols=76 Identities=24% Similarity=0.374 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEee--CCeEe---eEEeechhHHH
Q 008139 104 DEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVS 177 (576)
Q Consensus 104 ~~fl~~i~~~tG~~i-~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~--~~~~~---~~~SlplG~vr 177 (576)
...+..+-+..|+++ ++|+..+=|-+.| +..... ..+..+|+|+|||++.+++++ ++.+. ...+-.+|.-.
T Consensus 151 r~~~~~Aa~~agl~~~~li~Ep~Aaa~~y-~~~~~~--~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~ 227 (602)
T PF00012_consen 151 RQALRDAAELAGLNVLRLINEPTAAALAY-GLERSD--KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRD 227 (602)
T ss_dssp HHHHHHHHHHTT-EEEEEEEHHHHHHHHT-TTTSSS--SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHH
T ss_pred hhcccccccccccccceeecccccccccc-cccccc--cccceeccccccceEeeeehhcccccccccccccccccccce
Confidence 344444555689987 5787666555544 433322 345689999999999998865 55433 23456788777
Q ss_pred HHHhh
Q 008139 178 LSEKF 182 (576)
Q Consensus 178 l~e~f 182 (576)
+.+.+
T Consensus 228 ~D~~l 232 (602)
T PF00012_consen 228 FDEAL 232 (602)
T ss_dssp HHHHH
T ss_pred eccee
Confidence 76543
No 88
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=84.80 E-value=10 Score=43.54 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHC-CCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCce
Q 008139 68 SVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLV 145 (576)
Q Consensus 68 ~~~~L~~f~~~~~~~-~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i-~vIsg~eEA~l~~~gv~~~l~~~~~~~ 145 (576)
....|+..++.++.+ |-+..+ .+++--|.=. .+....+..+-+..|+++ ++|+...=|-+.| |.... .+...
T Consensus 130 ~a~iL~~lk~~ae~~lg~~v~~-~VITVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-~~~~~---~~~~v 203 (616)
T PRK05183 130 SAEILKALRQRAEETLGGELDG-AVITVPAYFD-DAQRQATKDAARLAGLNVLRLLNEPTAAAIAY-GLDSG---QEGVI 203 (616)
T ss_pred HHHHHHHHHHHHHHHhCCCcce-EEEEECCCCC-HHHHHHHHHHHHHcCCCeEEEecchHHHHHHh-hcccC---CCCEE
Confidence 345666667666554 432212 1222222211 223344555666789997 6888888887776 33221 23558
Q ss_pred EEEEeCCCceeEEEee--CCeEe---eEEeechhHHHHHHh
Q 008139 146 LSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSEK 181 (576)
Q Consensus 146 lviDIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~e~ 181 (576)
+|+|+|||++.+++++ ++.+. ....-.+|.--+.+.
T Consensus 204 lV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~ 244 (616)
T PRK05183 204 AVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHL 244 (616)
T ss_pred EEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHH
Confidence 9999999999999876 44321 122346777665543
No 89
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=84.59 E-value=6.3 Score=44.92 Aligned_cols=107 Identities=17% Similarity=0.246 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHC-CCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceE
Q 008139 69 VESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVL 146 (576)
Q Consensus 69 ~~~L~~f~~~~~~~-~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i-~vIsg~eEA~l~~~gv~~~l~~~~~~~l 146 (576)
-..|+..++.+..+ |-+..++ +++--|.= -.+....+...-+..|+++ ++|+...=|-+.| |.... ..+...+
T Consensus 112 a~~L~~l~~~a~~~~~~~v~~~-VItVPa~f-~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y-~~~~~--~~~~~vl 186 (595)
T TIGR02350 112 AMILQKLKKDAEAYLGEKVTEA-VITVPAYF-NDAQRQATKDAGKIAGLEVLRIINEPTAAALAY-GLDKS--KKDEKIL 186 (595)
T ss_pred HHHHHHHHHHHHHHhCCCCCeE-EEEECCCC-CHHHHHHHHHHHHHcCCceEEEecchHHHHHHH-hhccc--CCCcEEE
Confidence 34556666555443 4322222 22222221 1233334455555679996 5788877777765 43221 1245689
Q ss_pred EEEeCCCceeEEEee--CCeEe---eEEeechhHHHHHH
Q 008139 147 SVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSE 180 (576)
Q Consensus 147 viDIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~e 180 (576)
|+|+|||++.+++.+ ++.+. ......+|.--+.+
T Consensus 187 V~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~ 225 (595)
T TIGR02350 187 VFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQ 225 (595)
T ss_pred EEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHH
Confidence 999999999999876 33221 12234566655544
No 90
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=84.58 E-value=3.8 Score=43.99 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=64.1
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEE-E
Q 008139 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTR-A 91 (576)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~-~ 91 (576)
..++.||+||-|++.++.+ ++ +++...-.+ ++ ...+.+.++|+ +.+++.|++..++. +
T Consensus 144 g~~lGIDiGSTttK~Vl~d---d~--~Ii~~~~~~---------t~----~~~~~a~~~l~---~~l~~~Gl~~~di~~i 202 (404)
T TIGR03286 144 GLTLGIDSGSTTTKAVVME---DN--EVIGTGWVP---------TT----KVIESAEEAVE---RALEEAGVSLEDVEAI 202 (404)
T ss_pred CEEEEEEcChhheeeEEEc---CC--eEEEEEEee---------cc----cHHHHHHHHHH---HHHHHcCCCccceeEE
Confidence 3689999999999999985 33 445432221 11 11233333333 44555676544454 4
Q ss_pred EeehhhhhcCChHHHHHHHHHHcCCc--EEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCeEe
Q 008139 92 VATAAVRAAENKDEFVECVREKVGFE--VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVV 166 (576)
Q Consensus 92 vATsAvR~A~N~~~fl~~i~~~tG~~--i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~ 166 (576)
++|--=|.. +.. ..|.+ ++-| .-...|+..-.|...+...|+||||=-...+..++|++.
T Consensus 203 ~~TGyGR~~------i~~---~~~ad~iv~EI------taha~GA~~L~p~~~~v~TIIDIGGQDsK~I~l~~G~v~ 264 (404)
T TIGR03286 203 GTTGYGRFT------IGE---HFGADLIQEEL------TVNSKGAVYLADKQEGPATVIDIGGMDNKAISVWDGIPD 264 (404)
T ss_pred EeeeecHHH------Hhh---hcCCCceEEEE------hhHHHHHHHhcccCCCCcEEEEeCCCceEEEEEcCCcee
Confidence 455544432 221 12222 3333 334556655444211236999999987777777777653
No 91
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=84.40 E-value=11 Score=43.61 Aligned_cols=73 Identities=19% Similarity=0.284 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEee--CCeEeeE---EeechhH
Q 008139 102 NKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGK--RGKVVFC---ESVNLGH 175 (576)
Q Consensus 102 N~~~fl~~i~~~tG~~i-~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~--~~~~~~~---~SlplG~ 175 (576)
+....+...-+..|+++ ++|+...=|-+.|. .-.. .+...+|+|+|||++.+++++ +|.+.-. ...++|.
T Consensus 174 ~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg-~~~~---~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG 249 (657)
T PTZ00186 174 AQRQATKDAGTIAGLNVIRVVNEPTAAALAYG-MDKT---KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGG 249 (657)
T ss_pred HHHHHHHHHHHHcCCCeEEEEcChHHHHHHHh-ccCC---CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCc
Confidence 34444556666789996 68999888888763 3211 245689999999999999876 5544321 2346666
Q ss_pred HHH
Q 008139 176 VSL 178 (576)
Q Consensus 176 vrl 178 (576)
--+
T Consensus 250 ~Df 252 (657)
T PTZ00186 250 EDF 252 (657)
T ss_pred hhH
Confidence 544
No 92
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=83.72 E-value=3.3 Score=46.30 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=45.4
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHCCCCcccE
Q 008139 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHT 89 (576)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i 89 (576)
+.+..||+||.|+|..+++. +|+. +.........-......| ...++. .+.+++++++ ++++.+++..+|
T Consensus 3 ~~~lgID~GTts~Ka~l~d~--~G~~--l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~---~~~~~~~~~~~I 75 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDL--NGNQ--IAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQ---ALQKAGIPASDI 75 (520)
T ss_pred cEEEEEecCCCceEEEEECC--CCCE--EEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHH---HHHHcCCCccce
Confidence 36889999999999999974 4643 333322211110111122 233433 4455555554 444456665679
Q ss_pred EEEeehhhh
Q 008139 90 RAVATAAVR 98 (576)
Q Consensus 90 ~~vATsAvR 98 (576)
.+++.++.+
T Consensus 76 ~aI~~s~~~ 84 (520)
T PRK10939 76 AAVSATSMR 84 (520)
T ss_pred EEEEEECCc
Confidence 999988764
No 93
>PRK13410 molecular chaperone DnaK; Provisional
Probab=83.72 E-value=11 Score=43.51 Aligned_cols=113 Identities=18% Similarity=0.222 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHC-CCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhcc
Q 008139 60 ISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQF 137 (576)
Q Consensus 60 Ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i-~vIsg~eEA~l~~~gv~~~ 137 (576)
++++.+ +...|+..++.+..+ |.+..+ .+++-=|.=.. .....+..+-+..|+++ ++|+...=|-+.| |....
T Consensus 110 ~speel--~a~iL~~lk~~ae~~lg~~v~~-~VITVPa~f~~-~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-g~~~~ 184 (668)
T PRK13410 110 FAPEEL--SAMILRKLADDASRYLGEPVTG-AVITVPAYFND-SQRQATRDAGRIAGLEVERILNEPTAAALAY-GLDRS 184 (668)
T ss_pred EcHHHH--HHHHHHHHHHHHHHHhCCCcce-EEEEECCCCCH-HHHHHHHHHHHHcCCCeEEEecchHHHHHHh-ccccC
Confidence 444333 334566666655544 433222 22332222111 22233444455679995 5899988888876 33221
Q ss_pred CCCCCCceEEEEeCCCceeEEEee--CCeEe---eEEeechhHHHHHH
Q 008139 138 LPVFDRLVLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSE 180 (576)
Q Consensus 138 l~~~~~~~lviDIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~e 180 (576)
.+...+|+|+|||++.+++++ ++.+. .....++|.--+.+
T Consensus 185 ---~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~ 229 (668)
T PRK13410 185 ---SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDK 229 (668)
T ss_pred ---CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHH
Confidence 235689999999999999876 33221 12234677665544
No 94
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=83.31 E-value=9.4 Score=44.15 Aligned_cols=107 Identities=14% Similarity=0.239 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHC-CCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceE
Q 008139 69 VESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVL 146 (576)
Q Consensus 69 ~~~L~~f~~~~~~~-~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i-~vIsg~eEA~l~~~gv~~~l~~~~~~~l 146 (576)
-..|+..++.++.+ |.+..+ .+++.-|.=. ......+..+-+..|+++ ++|+...=|-+.| |... . .....+
T Consensus 156 a~iL~~lk~~ae~~lg~~v~~-~VITVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay-~~~~--~-~~~~vl 229 (663)
T PTZ00400 156 AFVLEKMKETAESYLGRKVKQ-AVITVPAYFN-DSQRQATKDAGKIAGLDVLRIINEPTAAALAF-GMDK--N-DGKTIA 229 (663)
T ss_pred HHHHHHHHHHHHHHhCCCCce-EEEEECCCCC-HHHHHHHHHHHHHcCCceEEEeCchHHHHHHh-cccc--C-CCcEEE
Confidence 34566666666543 433222 2233222211 122334445555679995 5788887777766 4322 1 235689
Q ss_pred EEEeCCCceeEEEee--CCeEe---eEEeechhHHHHHHh
Q 008139 147 SVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSEK 181 (576)
Q Consensus 147 viDIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~e~ 181 (576)
|+|+|||++.+++++ ++.+. .....++|..-+.+.
T Consensus 230 V~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~ 269 (663)
T PTZ00400 230 VYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQR 269 (663)
T ss_pred EEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHH
Confidence 999999999999876 55432 223346776655543
No 95
>PRK13321 pantothenate kinase; Reviewed
Probab=82.89 E-value=29 Score=34.99 Aligned_cols=130 Identities=15% Similarity=0.224 Sum_probs=68.1
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEee
Q 008139 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (576)
+-+||||-.++++-+++ . + +++.+.+.++.... ++ + +.+..+.++++.++.+..++..++-
T Consensus 2 iL~IDIGnT~ik~gl~~-~--~--~i~~~~~~~T~~~~--------~~---~---~~~~~l~~l~~~~~~~~~~i~~i~v 62 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-G--D--RLLRSFRLPTDKSR--------TS---D---ELGILLLSLFRHAGLDPEDIRAVVI 62 (256)
T ss_pred EEEEEECCCeEEEEEEE-C--C--EEEEEEEEecCCCC--------CH---H---HHHHHHHHHHHHcCCChhhCCeEEE
Confidence 35799999999999986 2 2 34444433322111 11 1 2223333444445543234555555
Q ss_pred hhhhhcCChHHHHHHHHHHcCCcEEEeChH-----HHHH-----------HHHhhhhccCCCCCCceEEEEeCCCceeEE
Q 008139 95 AAVRAAENKDEFVECVREKVGFEVDVLTGE-----QEAK-----------FVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (576)
Q Consensus 95 sAvR~A~N~~~fl~~i~~~tG~~i~vIsg~-----eEA~-----------l~~~gv~~~l~~~~~~~lviDIGGGStEl~ 158 (576)
+.+..+. ...+.+.+.+..+.++.+++.. +.+| ....|+.... ..++.+|+|.|..-|==+
T Consensus 63 ssVvp~~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~y~~P~~lG~DR~a~~~aa~~~~--~~~~~lvid~GTA~T~d~ 139 (256)
T PRK13321 63 SSVVPPL-NYSLESACKRYFGIKPLFVGPGIKTGLKIRYDNPREVGADRIVNAVAARRLY--PDRNLIVVDFGTATTFDC 139 (256)
T ss_pred EeecccH-HHHHHHHHHHHhCCCeEEECCCCCCCcccccCChhhccHHHHHHHHHHHHHc--CCCCEEEEECCCceEEEE
Confidence 5576543 4456555666667777665321 1111 1222222222 123689999999988655
Q ss_pred EeeCCeEe
Q 008139 159 IGKRGKVV 166 (576)
Q Consensus 159 ~~~~~~~~ 166 (576)
+-.+|+..
T Consensus 140 v~~~g~~~ 147 (256)
T PRK13321 140 VSGKGEYL 147 (256)
T ss_pred EcCCCcEE
Confidence 54555544
No 96
>PRK13318 pantothenate kinase; Reviewed
Probab=82.88 E-value=13 Score=37.54 Aligned_cols=128 Identities=13% Similarity=0.191 Sum_probs=66.8
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEee
Q 008139 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (576)
+-+||||-..+++.+++ ++. .+++.+.++.... +.+. .+..+.++++.++.+..++..++=
T Consensus 2 iL~IDIGnT~iK~al~d---~g~--i~~~~~~~t~~~~--------~~~~------~~~~l~~l~~~~~~~~~~i~~I~i 62 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE---GGK--LVAHWRISTDSRR--------TADE------YGVWLKQLLGLSGLDPEDITGIII 62 (258)
T ss_pred EEEEEECCCcEEEEEEE---CCE--EEEEEEEeCCCCC--------CHHH------HHHHHHHHHHHcCCCcccCceEEE
Confidence 45799999999999997 243 3444333321111 1122 223344455666653224555665
Q ss_pred hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHH-----------------HHHHhhhhccCCCCCCceEEEEeCCCcee
Q 008139 95 AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEA-----------------KFVYMGVLQFLPVFDRLVLSVDIGGGSTE 156 (576)
Q Consensus 95 sAvR~A~N~~~fl~~i~~~tG~~i-~vIsg~eEA-----------------~l~~~gv~~~l~~~~~~~lviDIGGGStE 156 (576)
+.|....+ +.+.+.++...+.++ -+.+ .++. .....|+....+ ++.+|+|.|.+-|=
T Consensus 63 ssVvp~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~gl~~~y~np~~lG~DR~a~~~aa~~~~~---~~~ivid~GTA~t~ 137 (258)
T PRK13318 63 SSVVPSVM-HSLERMCRKYFNIEPLVVVG-PGVKTGINIKVDNPKEVGADRIVNAVAAYELYG---GPLIVVDFGTATTF 137 (258)
T ss_pred EEecCchH-HHHHHHHHHHhCCCCeEEEC-CCcCCCCceecCChhhcchHHHHHHHHHHHHcC---CCEEEEEcCCceEE
Confidence 55664433 444455554444433 2222 1110 022233333332 36899999999887
Q ss_pred EEEeeCCeEe
Q 008139 157 FVIGKRGKVV 166 (576)
Q Consensus 157 l~~~~~~~~~ 166 (576)
=++-.+|+..
T Consensus 138 d~v~~~g~~~ 147 (258)
T PRK13318 138 DVVSAKGEYL 147 (258)
T ss_pred EEEcCCCcEE
Confidence 6665666554
No 97
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=82.34 E-value=5.2 Score=44.25 Aligned_cols=83 Identities=14% Similarity=0.173 Sum_probs=52.2
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CC-CHHHHHHHHHHHHHHHHHHHHCCCCccc
Q 008139 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SI-STQSQARSVESLLMFRDIIQSHNISRDH 88 (576)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g--~L-s~e~i~r~~~~L~~f~~~~~~~~v~~~~ 88 (576)
.+.++.||+||.|.|..|++.. +|.. +.....+++-... +.| .- +.+-.+..++||+.-.+.+...+.....
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~-~~e~--l~~~~~~i~~~~~--~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~ 79 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAK-NGEL--LSLAQKEITQEFP--KEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVG 79 (516)
T ss_pred cceEEEEEcCCCceEEEEEecC-CCcc--ceeeeeeeeeecC--CCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 4789999999999999999865 3432 2222223222211 112 12 4566677788888877777666665555
Q ss_pred EEEEeehhhhh
Q 008139 89 TRAVATAAVRA 99 (576)
Q Consensus 89 i~~vATsAvR~ 99 (576)
+.+++.+--|+
T Consensus 80 ~~~igv~~qr~ 90 (516)
T KOG2517|consen 80 ATCIGVVNQRE 90 (516)
T ss_pred cEEEEEEecCC
Confidence 66666665555
No 98
>PLN03184 chloroplast Hsp70; Provisional
Probab=82.02 E-value=12 Score=43.31 Aligned_cols=72 Identities=19% Similarity=0.357 Sum_probs=46.5
Q ss_pred HHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCC--eEe---eEEeechhHHHHH
Q 008139 106 FVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRG--KVV---FCESVNLGHVSLS 179 (576)
Q Consensus 106 fl~~i~~~tG~~i-~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~--~~~---~~~SlplG~vrl~ 179 (576)
.+..+-+..|+++ ++|+...=|-+.| |... . .+...+|+|+|||++.+++++-+ .+. .....++|.--+.
T Consensus 190 a~~~Aa~~AGl~v~~li~EPtAAAlay-g~~~--~-~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD 265 (673)
T PLN03184 190 ATKDAGRIAGLEVLRIINEPTAASLAY-GFEK--K-SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 265 (673)
T ss_pred HHHHHHHHCCCCeEEEeCcHHHHHHHh-hccc--C-CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHH
Confidence 3445555679995 5788887777766 3322 1 23568999999999999887533 221 2234577776665
Q ss_pred Hh
Q 008139 180 EK 181 (576)
Q Consensus 180 e~ 181 (576)
+.
T Consensus 266 ~~ 267 (673)
T PLN03184 266 KR 267 (673)
T ss_pred HH
Confidence 53
No 99
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=81.24 E-value=2.9 Score=36.97 Aligned_cols=32 Identities=25% Similarity=0.502 Sum_probs=25.1
Q ss_pred EEEEeCCCceeEEEeeCCeEeeEEeechhHHH
Q 008139 146 LSVDIGGGSTEFVIGKRGKVVFCESVNLGHVS 177 (576)
Q Consensus 146 lviDIGGGStEl~~~~~~~~~~~~SlplG~vr 177 (576)
+++|||++.|-+++++.+...+...+|+|...
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~ 33 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVP 33 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEEEEEES-----
T ss_pred EEEEcCCCcEEEEEEEeCCCCcEEEEEEeccc
Confidence 68999999999999999999999999999543
No 100
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=80.29 E-value=6.4 Score=32.96 Aligned_cols=84 Identities=13% Similarity=0.249 Sum_probs=47.4
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEee
Q 008139 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (576)
+-+||+|...+++.+.+- +|.+ +...+.+.. . + . .+ .++.+.++++++.+ ...+++.
T Consensus 3 ilgiD~Ggt~i~~a~~d~--~g~~--~~~~~~~~~--~----~--~-~~-------~~~~l~~~i~~~~~---~~i~Ig~ 59 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDE--TGKL--ADPLEVIPR--T----N--K-EA-------DAARLKKLIKKYQP---DLIVIGL 59 (99)
T ss_pred EEEEccCCCeEEEEEECC--CCCE--ecCEEEEEe--c----C--c-ch-------HHHHHHHHHHHhCC---CEEEEeC
Confidence 568999999999999853 4543 333333322 0 0 0 11 23333444445554 3466772
Q ss_pred hh-----hhhcCChHHHHHHHHHHcCCcEEEeC
Q 008139 95 AA-----VRAAENKDEFVECVREKVGFEVDVLT 122 (576)
Q Consensus 95 sA-----vR~A~N~~~fl~~i~~~tG~~i~vIs 122 (576)
.. +...-+ ..|.+.+++.+|++|.+.+
T Consensus 60 pg~v~g~~~~~~~-~~l~~~l~~~~~~pv~~~n 91 (99)
T smart00732 60 PLNMNGTASRETE-EAFAELLKERFNLPVVLVD 91 (99)
T ss_pred CcCCCCCcCHHHH-HHHHHHHHHhhCCcEEEEe
Confidence 21 121223 6777888888899888765
No 101
>PRK11678 putative chaperone; Provisional
Probab=79.82 E-value=18 Score=39.78 Aligned_cols=86 Identities=23% Similarity=0.362 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHC-CCCcccEEEEeehhhh------hcCCh--HHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhccCC
Q 008139 70 ESLLMFRDIIQSH-NISRDHTRAVATAAVR------AAENK--DEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLP 139 (576)
Q Consensus 70 ~~L~~f~~~~~~~-~v~~~~i~~vATsAvR------~A~N~--~~fl~~i~~~tG~~-i~vIsg~eEA~l~~~gv~~~l~ 139 (576)
..|+.+++.++.+ |.+.. .+|-|-=.. ...|+ ..++..+.+..|++ +++++...=|-+.| |. .++
T Consensus 132 ~iL~~lk~~ae~~~g~~v~--~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y-~~--~~~ 206 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAIT--QAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDF-EA--TLT 206 (450)
T ss_pred HHHHHHHHHHHHHhCCCCC--cEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHh-cc--ccC
Confidence 3455666655543 54322 334443322 12333 34567777788998 57899888888877 32 222
Q ss_pred CCCCceEEEEeCCCceeEEEee
Q 008139 140 VFDRLVLSVDIGGGSTEFVIGK 161 (576)
Q Consensus 140 ~~~~~~lviDIGGGStEl~~~~ 161 (576)
.+...+|+|+|||++.+++++
T Consensus 207 -~~~~vlV~D~GGGT~D~Svv~ 227 (450)
T PRK11678 207 -EEKRVLVVDIGGGTTDCSMLL 227 (450)
T ss_pred -CCCeEEEEEeCCCeEEEEEEE
Confidence 245689999999999999875
No 102
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=79.53 E-value=27 Score=35.28 Aligned_cols=127 Identities=20% Similarity=0.289 Sum_probs=74.9
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHH-HHHHHHHCCCCccc--EEEEe
Q 008139 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLM-FRDIIQSHNISRDH--TRAVA 93 (576)
Q Consensus 17 vIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~-f~~~~~~~~v~~~~--i~~vA 93 (576)
-||.|+.+++.++++. +|. ++.+.. ....++....++.+.+.|+. +.+++++.+.+..+ ..+++
T Consensus 2 GIDgGgTkt~~vl~d~--~g~--il~~~~---------~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g 68 (271)
T PF01869_consen 2 GIDGGGTKTKAVLVDE--NGN--ILGRGK---------GGGANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIG 68 (271)
T ss_dssp EEEECSSEEEEEEEET--TSE--EEEEEE---------ES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred EEeeChheeeeEEEeC--CCC--EEEEEE---------eCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeee
Confidence 4999999999999974 443 332221 11122333344444444432 34455555665333 44567
Q ss_pred ehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCeEeeE
Q 008139 94 TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (576)
Q Consensus 94 TsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~ 168 (576)
++.+=.+.+...|...+... ++.+.+-..-+ ..+.. . ++++++=-|.||.=+.+-++|+....
T Consensus 69 ~aG~~~~~~~~~~~~~~~~~---~v~~~~Da~~a---l~~~~---~---~~giv~I~GTGS~~~~~~~~g~~~r~ 131 (271)
T PF01869_consen 69 AAGYGRAGDEQEFQEEIVRS---EVIVVNDAAIA---LYGAT---A---EDGIVVIAGTGSIAYGRDRDGRVIRF 131 (271)
T ss_dssp EEEEEETTTTTHHHHHHHHH---EEEEEEHHHHH---HHHHS---T---SSEEEEEESSSEEEEEEETTSEEEEE
T ss_pred EeeecCcccccchhhcceEE---EEEEEHHHHHH---hCCCC---C---CcEEEEEcCCCceEEEEEcCCcEEEe
Confidence 77776777776777666655 77777764332 22222 1 23677778889998887768876643
No 103
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=79.50 E-value=76 Score=32.60 Aligned_cols=132 Identities=20% Similarity=0.151 Sum_probs=75.3
Q ss_pred EEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEeeh
Q 008139 16 ASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATA 95 (576)
Q Consensus 16 AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATs 95 (576)
-.|||||..+++++.+. ++++... +. ++ ..++..++-|+..... ++. ...+.+|-
T Consensus 3 iGiDiGgT~~Kiv~~~~--~~~~~f~---~~---------~~-----~~~~~~~~~l~~~~~~---~~~---~~~i~~TG 57 (279)
T TIGR00555 3 IGIDIGGTLIKVVYEEP--KGRRKFK---TF---------ET-----TNIDKFIEWLKNQIHR---HSR---ITTLCATG 57 (279)
T ss_pred EEEEeCcceEEEEEEcC--CCcEEEE---Ee---------ec-----ccHHHHHHHHHHHHHh---hcC---ceEEEEEC
Confidence 47999999999999752 4443211 11 11 1234444444433322 222 23445553
Q ss_pred hhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCC----CCCceEEEEeCCCceeEEEeeCCeEeeEEee
Q 008139 96 AVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPV----FDRLVLSVDIGGGSTEFVIGKRGKVVFCESV 171 (576)
Q Consensus 96 AvR~A~N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~----~~~~~lviDIGGGStEl~~~~~~~~~~~~Sl 171 (576)
..+-.|-+.++...|+++. -.+|-.-...|+..-++. +-.+.+++.||.| |-++.+++.+..+.---
T Consensus 58 -----gGa~k~~~~~~~~~~v~~~---k~dE~~a~~~g~~~ll~~~~~~~~~p~llvnIGsG-vSi~~v~~~~~~Rv~Gt 128 (279)
T TIGR00555 58 -----GGAFKFAELIYESAGIQLH---KFDEFDALIQGLNYLLKEEPKDDIYPYLLVNIGTG-TSILYVDGDNYERVGGT 128 (279)
T ss_pred -----CcHHHHHHHhccccCCccc---chhHHHHHHHHHHHHhhcccCCCCCceEEEEecCC-eEEEEEcCccEEEEcCc
Confidence 3445666777777765542 344555555666544331 1235799999888 88888876666655555
Q ss_pred chhHHHHHHh
Q 008139 172 NLGHVSLSEK 181 (576)
Q Consensus 172 plG~vrl~e~ 181 (576)
.+|--.+-..
T Consensus 129 ~iGGGTf~GL 138 (279)
T TIGR00555 129 SLGGGTFLGL 138 (279)
T ss_pred cccHHHHHHH
Confidence 6776665543
No 104
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=79.24 E-value=2.5 Score=45.30 Aligned_cols=85 Identities=16% Similarity=0.142 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccc--------------cC---CCCchhh
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF--------------TS---KKGYHKQ 423 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~--------------I~---~~~h~~H 423 (576)
.|+--|+.+|..|...+..... ... ........++++||++||||.. -. ...|..+
T Consensus 41 tHslev~~i~r~~~~~l~~~~~--~~~-----~~~~~~~~l~~~a~L~HDiGhpPfgH~gE~~l~~~~~~~g~~f~~n~q 113 (381)
T TIGR01353 41 THSLEVAQVGRSIANLIGLRYD--LEL-----EELGPFERLAETACLAHDIGNPPFGHAGERALNDWMREYGPGFEGNAQ 113 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc--ccc-----ccccccHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhcCCCCChHHH
Confidence 7999999999999888754211 000 0122356799999999999952 22 3567777
Q ss_pred hHHHHHcCCC----CCCCCHHHHHHHHHHHHhcc
Q 008139 424 SCHIIMNGDH----LYGYSTDEIKLIALLTRFHR 453 (576)
Q Consensus 424 s~yiI~ns~~----l~G~s~~E~~~iA~i~ryhr 453 (576)
|+-|+..-+. ..|++- -...++.++.|-+
T Consensus 114 ~~ri~~~Le~~~~~~~GLNL-T~~tL~~i~KYp~ 146 (381)
T TIGR01353 114 TFRILTTLEKRRRAKGGLNL-TWRTLAGILKYPR 146 (381)
T ss_pred HHHHHHHHhhccCCcCCcCC-CHHHHHHHHcCCc
Confidence 8888765321 235553 3445566666654
No 105
>PRK00047 glpK glycerol kinase; Provisional
Probab=78.98 E-value=7.1 Score=43.40 Aligned_cols=78 Identities=15% Similarity=0.263 Sum_probs=45.3
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHCCCCcccE
Q 008139 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHT 89 (576)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i 89 (576)
+.+..||+||.|+|..+++. +|+. +.....++.+ .....| ...++. .+.++++++ +++++.+++..+|
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~--~g~~--~~~~~~~~~~--~~~~~g~~e~d~~~~~~~~~~~~~---~~~~~~~~~~~~I 75 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDH--DGNI--VSVAQKEFTQ--IFPQPGWVEHDPNEIWASQLSVIA---EALAKAGISPDQI 75 (498)
T ss_pred CEEEEEecCCCceEEEEECC--CCCE--EEEEeeeccc--cCCCCCeEeeCHHHHHHHHHHHHH---HHHHHcCCChhHe
Confidence 36788999999999999974 4544 3333333222 111123 233443 334444444 4455567765678
Q ss_pred EEEeehhhhh
Q 008139 90 RAVATAAVRA 99 (576)
Q Consensus 90 ~~vATsAvR~ 99 (576)
.+|+-++.+.
T Consensus 76 ~~Igis~~~~ 85 (498)
T PRK00047 76 AAIGITNQRE 85 (498)
T ss_pred eEEEEecCcc
Confidence 8888887754
No 106
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=78.80 E-value=9.7 Score=43.43 Aligned_cols=88 Identities=20% Similarity=0.327 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHC-CCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCce
Q 008139 68 SVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLV 145 (576)
Q Consensus 68 ~~~~L~~f~~~~~~~-~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i-~vIsg~eEA~l~~~gv~~~l~~~~~~~ 145 (576)
+-..|+.+++.++.+ |-+.. .+|-|=-..--.+....+..+-+..|+++ ++|+...=|-+.| |.... .+...
T Consensus 122 ~a~iL~~lk~~ae~~lg~~v~--~aVITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-~~~~~---~~~~v 195 (595)
T PRK01433 122 AAEIFIYLKNQAEEQLKTNIT--KAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAY-GLNKN---QKGCY 195 (595)
T ss_pred HHHHHHHHHHHHHHHhCCCcc--eEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHH-hcccC---CCCEE
Confidence 345677777776554 43222 33444322222344555666666789996 5888888888776 43221 23458
Q ss_pred EEEEeCCCceeEEEee
Q 008139 146 LSVDIGGGSTEFVIGK 161 (576)
Q Consensus 146 lviDIGGGStEl~~~~ 161 (576)
+|+|+|||++.+++++
T Consensus 196 lV~DlGGGT~DvSi~~ 211 (595)
T PRK01433 196 LVYDLGGGTFDVSILN 211 (595)
T ss_pred EEEECCCCcEEEEEEE
Confidence 9999999999999876
No 107
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=78.67 E-value=8.6 Score=42.34 Aligned_cols=77 Identities=10% Similarity=0.238 Sum_probs=44.5
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHCCCCcccEE
Q 008139 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTR 90 (576)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i~ 90 (576)
.+.+||+||.|+|..+++. +|+..-..+...+..+ .....| ...++. .+.+++++++... . +++.+|.
T Consensus 2 ~ilgiD~GTss~K~~l~d~--~g~~va~~~~~~~~~~--~~~~~g~~eqd~~~~w~~~~~~~~~l~~---~--~~~~~I~ 72 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR--QGKIVASASTPNATKQ--AIENNDYHIWDLEAIWQKLADCCQQINS---E--LTEKHIR 72 (465)
T ss_pred eEEEEecCCCcEEEEEEcC--CCCEEEEEecccccCC--CCCCCCceeeCHHHHHHHHHHHHHHHHh---h--cChhceE
Confidence 4678999999999999984 5654333332222212 111222 334544 4455666666543 2 3335689
Q ss_pred EEeehhhhh
Q 008139 91 AVATAAVRA 99 (576)
Q Consensus 91 ~vATsAvR~ 99 (576)
+|+.++.+.
T Consensus 73 aI~~s~~~~ 81 (465)
T TIGR02628 73 GIAVTTFGV 81 (465)
T ss_pred EEEEecccc
Confidence 999877655
No 108
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=78.62 E-value=50 Score=34.06 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=80.3
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccE--EEEee
Q 008139 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHT--RAVAT 94 (576)
Q Consensus 17 vIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i--~~vAT 94 (576)
.||||.+.+++.+++.. |. ++.+.+.+. .. -.++.++.+.+.+++|.+.+ +.+..++ ..||+
T Consensus 2 gidig~t~~~~~l~d~~--g~--i~~~~~~~~------~~---~~~~~~~~l~~~i~~~~~~~---~~~~~~i~gIgva~ 65 (318)
T TIGR00744 2 GVDIGGTTIKLGVVDEE--GN--ILSKWKVPT------DT---TPETIVDAIASAVDSFIQHI---AKVGHEIVAIGIGA 65 (318)
T ss_pred EEEeCCCEEEEEEECCC--CC--EEEEEEeCC------CC---CHHHHHHHHHHHHHHHHHhc---CCCccceEEEEEec
Confidence 68999999999999753 43 344333321 11 14566777888888876643 3222233 34555
Q ss_pred hhhhhcC------------ChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeC
Q 008139 95 AAVRAAE------------NKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKR 162 (576)
Q Consensus 95 sAvR~A~------------N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~ 162 (576)
...=+.. +.-.+.+.+++++|++|-+.+.-.=+-+.-.-.-... ..++.+++.+|.|. -..++.+
T Consensus 66 pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~~~alaE~~~g~~~--~~~~~~~v~igtGi-G~giv~~ 142 (318)
T TIGR00744 66 PGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLPVVVENDANAAALGEYKKGAGK--GARDVICITLGTGL-GGGIIIN 142 (318)
T ss_pred cccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCCEEEechHHHHHHHHHHhcccC--CCCcEEEEEeCCcc-EEEEEEC
Confidence 4422211 2335778899999999999887766555332111111 23568999999887 5566677
Q ss_pred CeEee
Q 008139 163 GKVVF 167 (576)
Q Consensus 163 ~~~~~ 167 (576)
|++..
T Consensus 143 G~~~~ 147 (318)
T TIGR00744 143 GEIRH 147 (318)
T ss_pred CEEee
Confidence 77765
No 109
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=78.05 E-value=25 Score=40.66 Aligned_cols=108 Identities=17% Similarity=0.229 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHC-CCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceE
Q 008139 69 VESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVL 146 (576)
Q Consensus 69 ~~~L~~f~~~~~~~-~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i-~vIsg~eEA~l~~~gv~~~l~~~~~~~l 146 (576)
-..|+..++.++.+ |-+..+ .+++.-|.=. .+....+..+-+..|+++ ++|+...=|-+.| |...... .+...+
T Consensus 122 a~iL~~lk~~ae~~~g~~v~~-~VItVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y-~~~~~~~-~~~~vl 197 (653)
T PTZ00009 122 SMVLQKMKEIAEAYLGKQVKD-AVVTVPAYFN-DSQRQATKDAGTIAGLNVLRIINEPTAAAIAY-GLDKKGD-GEKNVL 197 (653)
T ss_pred HHHHHHHHHHHHHHhCCCcce-eEEEeCCCCC-HHHHHHHHHHHHHcCCceeEEecchHHHHHHH-hhhccCC-CCCEEE
Confidence 34455566665554 332222 2233222211 233444555666789995 6888888877776 3322211 235689
Q ss_pred EEEeCCCceeEEEee--CCeEeeE---EeechhHHHHHH
Q 008139 147 SVDIGGGSTEFVIGK--RGKVVFC---ESVNLGHVSLSE 180 (576)
Q Consensus 147 viDIGGGStEl~~~~--~~~~~~~---~SlplG~vrl~e 180 (576)
|+|+|||++.+++++ ++.+.-. ....+|..-+.+
T Consensus 198 v~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~ 236 (653)
T PTZ00009 198 IFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDN 236 (653)
T ss_pred EEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHH
Confidence 999999999998865 4443211 124566655543
No 110
>PRK13411 molecular chaperone DnaK; Provisional
Probab=77.29 E-value=19 Score=41.51 Aligned_cols=114 Identities=17% Similarity=0.247 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHC-CCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhcc
Q 008139 60 ISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQF 137 (576)
Q Consensus 60 Ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i-~vIsg~eEA~l~~~gv~~~ 137 (576)
++++.+- -..|+..++.++.+ |.+..++ +++--|.= -......+..+-+..|+++ ++|+...=|-+.| |....
T Consensus 108 ~~peei~--a~iL~~lk~~ae~~lg~~v~~~-VITVPa~f-~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y-~~~~~ 182 (653)
T PRK13411 108 YTPQEIS--AMILQKLKQDAEAYLGEPVTQA-VITVPAYF-TDAQRQATKDAGTIAGLEVLRIINEPTAAALAY-GLDKQ 182 (653)
T ss_pred ECHHHHH--HHHHHHHHHHHHHHhCCCcceE-EEEECCCC-CcHHHHHHHHHHHHcCCCeEEEecchHHHHHHh-ccccc
Confidence 4454443 23466666666554 4332221 22222221 1233344555566789995 6888887777766 33221
Q ss_pred CCCCCCceEEEEeCCCceeEEEee--CCeEe-e--EEeechhHHHHHH
Q 008139 138 LPVFDRLVLSVDIGGGSTEFVIGK--RGKVV-F--CESVNLGHVSLSE 180 (576)
Q Consensus 138 l~~~~~~~lviDIGGGStEl~~~~--~~~~~-~--~~SlplG~vrl~e 180 (576)
..+...+|+|+|||++.+++.+ ++.+. . ...-.+|..-+.+
T Consensus 183 --~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~ 228 (653)
T PRK13411 183 --DQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDN 228 (653)
T ss_pred --CCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHH
Confidence 1245589999999999998865 33221 1 2223566655544
No 111
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=76.16 E-value=16 Score=41.64 Aligned_cols=96 Identities=16% Similarity=0.210 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhcc
Q 008139 59 SISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQF 137 (576)
Q Consensus 59 ~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~-i~vIsg~eEA~l~~~gv~~~ 137 (576)
.++++.+ ....|+.+++.++.+--...+ .+|-|=-.--..+...-...+-+..|++ +++|+...=|-|.| |.-..
T Consensus 94 ~~~~eei--sa~~L~~lk~~ae~~lg~~v~-~~VItVPayF~d~qR~at~~A~~iaGl~vlrlinEPtAAAlay-g~~~~ 169 (579)
T COG0443 94 KYTPEEI--SAMILTKLKEDAEAYLGEKVT-DAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAY-GLDKG 169 (579)
T ss_pred eeCHHHH--HHHHHHHHHHHHHHhhCCCcc-eEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHh-HhccC
Confidence 4555444 345566777777666433222 3454433323333344555556667877 67899988888887 33332
Q ss_pred CCCCCCceEEEEeCCCceeEEEee
Q 008139 138 LPVFDRLVLSVDIGGGSTEFVIGK 161 (576)
Q Consensus 138 l~~~~~~~lviDIGGGStEl~~~~ 161 (576)
.+...+|+|+|||.+-+++.+
T Consensus 170 ---~~~~vlV~DlGGGTfDvSll~ 190 (579)
T COG0443 170 ---KEKTVLVYDLGGGTFDVSLLE 190 (579)
T ss_pred ---CCcEEEEEEcCCCCEEEEEEE
Confidence 345689999999999999876
No 112
>PRK04123 ribulokinase; Provisional
Probab=75.65 E-value=12 Score=42.01 Aligned_cols=82 Identities=9% Similarity=0.045 Sum_probs=48.0
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeecc----CCCcCCC--CCHHH-HHHHHHHHHHHHHHHHHCCCC
Q 008139 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGR----DLSSSCS--ISTQS-QARSVESLLMFRDIIQSHNIS 85 (576)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~----~~~~~g~--Ls~e~-i~r~~~~L~~f~~~~~~~~v~ 85 (576)
+.+.+||+||.|+|..+++.. +|+. +........... .....|. ..++. .+.+++++++- ++..+++
T Consensus 3 ~~~lgiD~GTts~Ka~l~d~~-~g~~--~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~---~~~~~~~ 76 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVDCA-TGEE--LATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAV---LKEAGVD 76 (548)
T ss_pred cEEEEEecCCCceEEEEEECC-CCcE--eEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHH---HHHcCCC
Confidence 368899999999999999742 4543 322222222110 1122232 23444 56666666653 3445665
Q ss_pred cccEEEEeehhhhhc
Q 008139 86 RDHTRAVATAAVRAA 100 (576)
Q Consensus 86 ~~~i~~vATsAvR~A 100 (576)
..+|.+++-++.+..
T Consensus 77 ~~~I~aIgis~~~~~ 91 (548)
T PRK04123 77 PAAVVGIGVDFTGST 91 (548)
T ss_pred hhhEEEEEEecccce
Confidence 567999998887553
No 113
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=75.23 E-value=11 Score=41.91 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=45.5
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCC--CC-HHHHHHHHHHHHHHHHHHHHCCCCccc
Q 008139 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCS--IS-TQSQARSVESLLMFRDIIQSHNISRDH 88 (576)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~--Ls-~e~i~r~~~~L~~f~~~~~~~~v~~~~ 88 (576)
.+.+.+||+|+.++|.++++.+ ++ +++...+..-..-. ...|. -. ++-.+.+++++++..+ +..++..+
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~-~~--~~~~~~~~~~~~~~--~~~g~~e~d~~~~w~~~~~ai~~l~~---~~~~~~~~ 74 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDED-GG--EVVATARFENPVST--PQPGWAEQDPDELWQAILEALRQLLE---ESKIDPDA 74 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCC-CC--eEEEEeeccccccC--CCCCCcccCHHHHHHHHHHHHHHHHH---hcccChhh
Confidence 3578999999999999999864 23 33333322211111 11121 22 3344555555555544 44466567
Q ss_pred EEEEeehhhhh
Q 008139 89 TRAVATAAVRA 99 (576)
Q Consensus 89 i~~vATsAvR~ 99 (576)
|.+|+-++.+.
T Consensus 75 I~aI~is~~~~ 85 (502)
T COG1070 75 IAAIGISGQGH 85 (502)
T ss_pred ceEEEEecccc
Confidence 88887776543
No 114
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=74.82 E-value=2.3 Score=37.61 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=19.6
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEE
Q 008139 15 FASIDMGTSSFKLLIIRAYPNGKFLTI 41 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~l 41 (576)
+++|||||.++.+.|++....+..+++
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl 27 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVL 27 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEE
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEE
Confidence 589999999999999987544434443
No 115
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=73.61 E-value=8.6 Score=40.14 Aligned_cols=100 Identities=22% Similarity=0.302 Sum_probs=51.8
Q ss_pred HHCCCCcccEEEEeehhhhh--cCChHHHHHHH---HHHcCCc-------------EEEeChHHHHHHHHhhhhccCCCC
Q 008139 80 QSHNISRDHTRAVATAAVRA--AENKDEFVECV---REKVGFE-------------VDVLTGEQEAKFVYMGVLQFLPVF 141 (576)
Q Consensus 80 ~~~~v~~~~i~~vATsAvR~--A~N~~~fl~~i---~~~tG~~-------------i~vIsg~eEA~l~~~gv~~~l~~~ 141 (576)
..-|+.+.+|.++.|==+.+ ..+++...+.| +...-.+ |+|+...-=|.+.++.- +. .
T Consensus 87 ~~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~---~~-~ 162 (318)
T PF06406_consen 87 LKAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMD---LD-E 162 (318)
T ss_dssp HHHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHT---S--T
T ss_pred HHcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHh---hc-c
Confidence 33477766777777644432 12222222333 2223333 44454444455554433 22 1
Q ss_pred CCceEEEEeCCCceeEEEeeCCe--EeeE-EeechhHHHHHHhhc
Q 008139 142 DRLVLSVDIGGGSTEFVIGKRGK--VVFC-ESVNLGHVSLSEKFG 183 (576)
Q Consensus 142 ~~~~lviDIGGGStEl~~~~~~~--~~~~-~SlplG~vrl~e~f~ 183 (576)
.+..+|+||||+.|.+..+.++. +... .+.++|...+.+...
T Consensus 163 ~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~ 207 (318)
T PF06406_consen 163 DESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIA 207 (318)
T ss_dssp TSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHH
T ss_pred cCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHH
Confidence 24589999999999999988753 2222 345799999888653
No 116
>KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown]
Probab=73.32 E-value=4.4 Score=43.37 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCCchhhhHHH--H--HcCCCCCC
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQSCHI--I--MNGDHLYG 436 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~~~h~~Hs~yi--I--~ns~~l~G 436 (576)
+|+.-|..+|-.+-+.|..--+.- . .+++.+..=.++||+|||||.- |.+ |-|.- + ..++ +-
T Consensus 76 eHsLG~~~lA~~~v~~L~~~q~~E---l----~It~~d~~~vqvA~LLHDIGHG--PfS---HmFe~~f~~~v~s~--~e 141 (498)
T KOG2681|consen 76 EHSLGTYTLAGILVNALNKNQCPE---L----CITEVDLQAVQVAALLHDIGHG--PFS---HLFEGEFTPMVRSG--PE 141 (498)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCC---C----CCCHHHHHHHHHHHHHhhcCCC--chh---hhhhheecccccCC--cc
Confidence 688888888888887776542210 0 4577788889999999999942 222 22221 1 1332 57
Q ss_pred CCHHHHHH
Q 008139 437 YSTDEIKL 444 (576)
Q Consensus 437 ~s~~E~~~ 444 (576)
|+|++..+
T Consensus 142 ~~HE~~si 149 (498)
T KOG2681|consen 142 FYHEDMSI 149 (498)
T ss_pred cchhhhHH
Confidence 99988754
No 117
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=73.16 E-value=9.4 Score=42.38 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=44.9
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCC--CCHHH-HHHHHHHHHHHHHHHHHCCCCcccEE
Q 008139 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCS--ISTQS-QARSVESLLMFRDIIQSHNISRDHTR 90 (576)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~--Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i~ 90 (576)
.+..||+||.++|..+++. +|+ ++...+.+.+. .....|. ..++. .+.++++++. ++++.++++.+|.
T Consensus 2 ~~lgiDiGtt~iKa~l~d~--~g~--~l~~~~~~~~~--~~~~~g~~e~d~~~~~~~i~~~i~~---~~~~~~~~~~~i~ 72 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDK--DGN--IVAIHQKEFTQ--IFPKPGWVEHDPMEIWESVLSCIAE---ALAKAGIKPDDIA 72 (493)
T ss_pred eEEEEecCCCceEEEEECC--CCC--EEEEEeeeccc--cCCCCCcEeeCHHHHHHHHHHHHHH---HHHHcCCChhhee
Confidence 4678999999999999973 454 34444443332 1122232 23333 3333444444 4456677656788
Q ss_pred EEeehhhhh
Q 008139 91 AVATAAVRA 99 (576)
Q Consensus 91 ~vATsAvR~ 99 (576)
+|+-++.+.
T Consensus 73 aIgis~~~~ 81 (493)
T TIGR01311 73 AIGITNQRE 81 (493)
T ss_pred EEEEecCcc
Confidence 888777644
No 118
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=72.69 E-value=4.8 Score=38.54 Aligned_cols=71 Identities=18% Similarity=0.200 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCC---------------------
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKG--------------------- 419 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~~~--------------------- 419 (576)
+|...|+++|.+ |.+.+++.. .-...|++|||++.+.....
T Consensus 20 ~H~l~V~~~A~~----LA~~y~~d~--------------~kA~~AgilHD~aK~~p~~~~~~~~~~~~~~~~~~~~~~~l 81 (187)
T COG1713 20 EHCLGVAETAIE----LAEAYGLDP--------------EKAYLAGILHDIAKELPEQKLLKIAKKYGLELDLERESPLL 81 (187)
T ss_pred HHHHHHHHHHHH----HHHHhCCCH--------------HHHHHHHHHHHHHhhCCHHHHHHHHHHhCCCchhhccChHH
Confidence 799999999987 566665421 23888999999987755321
Q ss_pred -chhhhHHHHHcCCCCCCCCHHHHHHHHHHHHhccCC
Q 008139 420 -YHKQSCHIIMNGDHLYGYSTDEIKLIALLTRFHRKK 455 (576)
Q Consensus 420 -h~~Hs~yiI~ns~~l~G~s~~E~~~iA~i~ryhrk~ 455 (576)
|..-++|++.+- +|+..+|.. ..++||-..
T Consensus 82 lH~~vgay~~~~~---fGi~De~VL---~AI~~HTtg 112 (187)
T COG1713 82 LHGKVGAYLLKEE---FGIKDEEVL---SAIEYHTTG 112 (187)
T ss_pred HHHHHHHHHHHHH---hCCCcHHHH---HHHHHhccC
Confidence 344456666553 677765532 234566433
No 119
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=72.08 E-value=14 Score=41.42 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=44.0
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeec---cCCC------cCC--CCCHHHH-HHHHHHHHHHHHHHHH
Q 008139 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILG---RDLS------SSC--SISTQSQ-ARSVESLLMFRDIIQS 81 (576)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg---~~~~------~~g--~Ls~e~i-~r~~~~L~~f~~~~~~ 81 (576)
.+..||+||.|+|..|++.. +|+. +......+.+- .... ..| ...++.+ +.++++ +++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~-~G~~--~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~---~~~~~~~ 75 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVA-TGEE--IATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAA---IPTVLAE 75 (536)
T ss_pred eEEEEecCCCceEEEEEECC-CCcE--eeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHH---HHHHHHH
Confidence 36889999999999999832 4543 32222222210 0000 012 2233333 333333 4455566
Q ss_pred CCCCcccEEEEeehhhhh
Q 008139 82 HNISRDHTRAVATAAVRA 99 (576)
Q Consensus 82 ~~v~~~~i~~vATsAvR~ 99 (576)
.+++..+|.+|+.++.+.
T Consensus 76 ~~~~~~~I~aI~~s~q~~ 93 (536)
T TIGR01234 76 LGVDPADVVGIGVDFTAC 93 (536)
T ss_pred cCCCHHHEEEEEEecCcc
Confidence 677656799999887644
No 120
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=70.07 E-value=5.3 Score=43.66 Aligned_cols=50 Identities=14% Similarity=0.188 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhccc
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH 413 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~ 413 (576)
.|+.-|+.+|..|...+..... .+..+. +........++++||++||||.
T Consensus 64 tHsleV~~i~r~i~~~l~~~l~--~~~~~~-~~~~~~~~~lv~aa~L~HDiGh 113 (440)
T PRK01096 64 THSLEVSCVGRSLGMRVGETLK--EEKLPD-WISPADIGAIVQSACLAHDIGN 113 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--hhcccc-ccccchHHHHHHHHHHHhcCCC
Confidence 7888899988888776653211 000000 0001123469999999999995
No 121
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=69.37 E-value=19 Score=40.18 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=44.3
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHCCCCcc--c
Q 008139 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRD--H 88 (576)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~--~ 88 (576)
.+..||+||.|+|..+++. +|+. +...+.+..+- ....| ...++. .+.+++++++..+ ..+.+.. +
T Consensus 3 ~~lgiDiGTts~Ka~l~d~--~G~~--v~~~~~~~~~~--~~~~g~~eqd~~~~~~~~~~~l~~~~~---~~~~~~~~~~ 73 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE--KGNV--VSSHQIPHEQI--TPHPGWLEHDPEEILRNVYKCMNEAIK---KLREKGPSFK 73 (504)
T ss_pred EEEEEecCCCceEEEEECC--CCCE--EEEEEEeeccc--CCCCCeEeeCHHHHHHHHHHHHHHHHH---HcCCCCccCc
Confidence 5889999999999999974 4644 33333333221 11122 223333 3444555555443 3344333 6
Q ss_pred EEEEeehhhhh
Q 008139 89 TRAVATAAVRA 99 (576)
Q Consensus 89 i~~vATsAvR~ 99 (576)
|.+|+.++.+.
T Consensus 74 I~aIgis~q~~ 84 (504)
T PTZ00294 74 IKAIGITNQRE 84 (504)
T ss_pred eEEEEeecCcc
Confidence 89999888754
No 122
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=69.14 E-value=6.1 Score=43.17 Aligned_cols=83 Identities=17% Similarity=0.242 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHHHHHH-hcccccchhhhhhcccCcchHHHHHHHHHHhhcccc----------------cCCCCchhh
Q 008139 361 KAGAQCASIAKDIFEGLR-KCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF----------------TSKKGYHKQ 423 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~-~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~----------------I~~~~h~~H 423 (576)
.|+--|+.+|..|...+. .... +.. .. .....|+++||++||||.- .....|.-|
T Consensus 61 tHslev~~i~r~~~~~~~~~~~~-~~~------~~-~~~~~l~~a~~L~HDiGhpPfgH~gE~~L~~~~~~~ggFEgNaQ 132 (432)
T PRK05318 61 THSLEVAQIGTGIVAQLKKEKQP-ELK------PL-LPSDSLIESLCLAHDIGHPPFGHGGEVALNYMMRDHGGFEGNGQ 132 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc-ccc------cc-cccHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhcCCCchHHH
Confidence 799999999999988873 2211 000 00 0134689999999999953 123467777
Q ss_pred hHHHHHcCCC---CCCCCHHHHHHHHHHHHhc
Q 008139 424 SCHIIMNGDH---LYGYSTDEIKLIALLTRFH 452 (576)
Q Consensus 424 s~yiI~ns~~---l~G~s~~E~~~iA~i~ryh 452 (576)
|+-||..-+. -.|++- -...++.++.|-
T Consensus 133 slRIlt~Le~~~~~~GLNL-T~~tL~gilKYp 163 (432)
T PRK05318 133 TFRILTKLEPYTEHFGMNL-TRRTLLGILKYP 163 (432)
T ss_pred HHHHHHHHhccCCCCCccc-cHHHHHHHHcCC
Confidence 7777765431 246655 344556667663
No 123
>PRK09698 D-allose kinase; Provisional
Probab=68.68 E-value=1.3e+02 Score=30.66 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=79.0
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEE
Q 008139 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (576)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (576)
..+..||||.+.+++.+++. +|. ++.+.+.++. ...+++.++...+.+++|.+... ..+ .-..|
T Consensus 4 ~~~lgidig~t~i~~~l~d~--~g~--i~~~~~~~~~--------~~~~~~~~~~l~~~i~~~~~~~~-~~i---~gigi 67 (302)
T PRK09698 4 NVVLGIDMGGTHIRFCLVDA--EGE--ILHCEKKRTA--------EVIAPDLVSGLGEMIDEYLRRFN-ARC---HGIVM 67 (302)
T ss_pred cEEEEEEcCCcEEEEEEEcC--CCC--EEEEEEeCCc--------cccchHHHHHHHHHHHHHHHHcC-CCe---eEEEE
Confidence 35788999999999999876 343 3444333321 11234557877887777765321 111 12345
Q ss_pred eehhhhh--------cCC-------hHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeE
Q 008139 93 ATAAVRA--------AEN-------KDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEF 157 (576)
Q Consensus 93 ATsAvR~--------A~N-------~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl 157 (576)
|+...=+ ..| .-.+.+.+++++|++|.+.+.-.=+-+.-. ........+.+.+.+|.| +-.
T Consensus 68 a~pG~vd~~~g~i~~~~~~~~~~~~~~~l~~~l~~~~~~pv~v~NDa~aaa~~E~---~~~~~~~~~~~~v~lgtG-IG~ 143 (302)
T PRK09698 68 GFPALVSKDRRTVISTPNLPLTALDLYDLADKLENTLNCPVFFSRDVNLQLLWDV---KENNLTQQLVLGAYLGTG-MGF 143 (302)
T ss_pred eCCcceeCCCCEEEecCCCCccccccCCHHHHHHHHhCCCEEEcchHhHHHHHHH---HhcCCCCceEEEEEecCc-eEE
Confidence 5543211 222 224677888899999999887654433221 111112245788888876 444
Q ss_pred EEeeCCeEeeE
Q 008139 158 VIGKRGKVVFC 168 (576)
Q Consensus 158 ~~~~~~~~~~~ 168 (576)
.++-+|++...
T Consensus 144 giv~~G~~~~G 154 (302)
T PRK09698 144 AVWMNGAPWTG 154 (302)
T ss_pred EEEECCEEeeC
Confidence 56667777644
No 124
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=67.74 E-value=2.6 Score=39.15 Aligned_cols=20 Identities=50% Similarity=0.700 Sum_probs=17.3
Q ss_pred HHHHHHHHhhcccccCCCCc
Q 008139 401 YLEAACLLHNIGHFTSKKGY 420 (576)
Q Consensus 401 LL~~AalLHdIG~~I~~~~h 420 (576)
=|-+||+|||||-.++.++|
T Consensus 50 ~lVaaALLHDiGhl~~~~g~ 69 (186)
T COG4341 50 ALVAAALLHDIGHLYADYGH 69 (186)
T ss_pred HHHHHHHHHhHHHHhhhcCC
Confidence 37799999999999998774
No 125
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=67.60 E-value=75 Score=32.85 Aligned_cols=135 Identities=20% Similarity=0.204 Sum_probs=73.6
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCC---cCCCCC-HHHHHHHHHHHHHHHHHHHHCCCCccc
Q 008139 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLS---SSCSIS-TQSQARSVESLLMFRDIIQSHNISRDH 88 (576)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~---~~g~Ls-~e~i~r~~~~L~~f~~~~~~~~v~~~~ 88 (576)
+.+=.||-|+.++|.+|++. +|++ +|++.. +..... ++++..+.+++..+.. +-|.++++
T Consensus 5 ~~~lGVDGGGTkt~a~l~~~--~g~v-----------lg~g~sGpAN~~~~~~e~A~~ni~~ai~~A~~---~aG~~~~~ 68 (301)
T COG2971 5 PYFLGVDGGGTKTRAVLADE--DGNV-----------LGRGKSGPANIQLVGKEEAVRNIKDAIREALD---EAGLKPDE 68 (301)
T ss_pred cEEEEEccCCcceEEEEEcC--CCcE-----------EEEeccCCceecccchHHHHHHHHHHHHHHHH---hcCCCHHH
Confidence 56889999999999999973 4432 333322 123344 6777777777766653 22443322
Q ss_pred --EEEEeehhhhhcCChHHHHHHHHHHcC--CcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCe
Q 008139 89 --TRAVATAAVRAAENKDEFVECVREKVG--FEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGK 164 (576)
Q Consensus 89 --i~~vATsAvR~A~N~~~fl~~i~~~tG--~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~ 164 (576)
..+++.+..= .|.++-......-.. .++.|-+.- +..++|... ++.++|+=.|.||.=+.. ++++
T Consensus 69 i~~~~agla~ag--~~~~~~~~~~~~~l~~a~~v~v~~Dg---~iAl~ga~~-----~~~Gii~i~GTGSi~~~~-~gg~ 137 (301)
T COG2971 69 IAAIVAGLALAG--ANVEEAREELERLLPFAGKVDVENDG---LIALRGALG-----DDDGIIVIAGTGSIGYGR-KGGR 137 (301)
T ss_pred hCceeeeeeccC--cchhHHHHHHHHhcCccceEEEecCh---HHHHhhccC-----CCCCEEEEecCCeEEEEE-eCCe
Confidence 2233333221 122233333322222 245565554 444444321 345899999999999988 6665
Q ss_pred Eee--EEeechh
Q 008139 165 VVF--CESVNLG 174 (576)
Q Consensus 165 ~~~--~~SlplG 174 (576)
... -+.+++|
T Consensus 138 ~~r~GG~Gf~Ig 149 (301)
T COG2971 138 RERVGGWGFPIG 149 (301)
T ss_pred eEEecCcCcccc
Confidence 442 3445444
No 126
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=67.41 E-value=6.4 Score=38.87 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHhhccccc
Q 008139 397 KDLEYLEAACLLHNIGHFT 415 (576)
Q Consensus 397 ~~r~LL~~AalLHdIG~~I 415 (576)
.++.++-+||+|||||+-+
T Consensus 103 ~w~~~~~~aaLlHDlgK~~ 121 (218)
T TIGR03760 103 AWNAAVFYAALLHDLGKLA 121 (218)
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 3457899999999999983
No 127
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=67.20 E-value=34 Score=36.42 Aligned_cols=138 Identities=17% Similarity=0.089 Sum_probs=75.4
Q ss_pred cCCCceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCccc
Q 008139 9 QIPQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDH 88 (576)
Q Consensus 9 ~~~~~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~ 88 (576)
.++...+..||.||.+.++++.+- +. .+++.+.. ...+ .+. +.+++++-.+. .+...++
T Consensus 131 ~~~~~~~LGID~GSTtTK~VLm~d---~~-~I~~~~~~---~t~g-------~p~----~~~~l~~~le~---l~~~~~~ 189 (396)
T COG1924 131 EYQGMYTLGIDSGSTTTKAVLMED---GK-EILYGFYV---STKG-------RPI----AEKALKEALEE---LGEKLEE 189 (396)
T ss_pred hhcCcEEEEEecCCcceeEEEEeC---CC-eEEEEEEE---cCCC-------Chh----HHHHHHHHHHH---cccChhe
Confidence 345567899999999999999963 32 33333211 1111 122 23333333332 2332123
Q ss_pred EEE-EeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCeEee
Q 008139 89 TRA-VATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVF 167 (576)
Q Consensus 89 i~~-vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~ 167 (576)
|-. ..|-==|+.-+...+.|.+ ..|----++|+....|. .+ .|+||||==+-.+..++|.+..
T Consensus 190 I~~~~~TGYGR~~v~~~~~aD~~-------------~~Ei~ah~kgA~~f~p~--~d-tIiDIGGQD~K~i~i~dG~v~d 253 (396)
T COG1924 190 ILGLGVTGYGRNLVGAALGADKV-------------VVEISAHAKGARYFAPD--VD-TVIDIGGQDSKVIKLEDGKVDD 253 (396)
T ss_pred eeeeeeecccHHHhhhhhcCCcc-------------eeeeehhHHHHHHhCCC--Cc-EEEEecCcceeEEEEeCCeeee
Confidence 333 3444334443333333332 23444556787776653 22 9999999999999999998763
Q ss_pred EE---eechhHHHHHHhhc
Q 008139 168 CE---SVNLGHVSLSEKFG 183 (576)
Q Consensus 168 ~~---SlplG~vrl~e~f~ 183 (576)
.. -=.-|+-|+-|.+-
T Consensus 254 f~mN~~CAAGtGrFLE~~A 272 (396)
T COG1924 254 FTMNDKCAAGTGRFLEVIA 272 (396)
T ss_pred eEeccccccccchHHHHHH
Confidence 21 11345666666553
No 128
>PRK10331 L-fuculokinase; Provisional
Probab=66.25 E-value=34 Score=37.71 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=43.4
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHCCCCcccEE
Q 008139 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTR 90 (576)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i~ 90 (576)
.+.+||+||.|+|..+++. +|+. +...+.+...-......| ...++. .+.+++++++..+ +. ...+|.
T Consensus 3 ~~lgID~GTt~~Ka~l~d~--~G~~--~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~---~~--~~~~I~ 73 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDR--QGKI--VARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINS---EL--TECHIR 73 (470)
T ss_pred eEEEEecCCCceEEEEEcC--CCcE--EEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHH---hC--CccceE
Confidence 5788999999999999974 5654 444443322211111112 234443 3444555555433 22 223588
Q ss_pred EEeehhhhhc
Q 008139 91 AVATAAVRAA 100 (576)
Q Consensus 91 ~vATsAvR~A 100 (576)
+++-++.+..
T Consensus 74 ~I~is~~~~~ 83 (470)
T PRK10331 74 GITVTTFGVD 83 (470)
T ss_pred EEEEeccccc
Confidence 8888776653
No 129
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=66.02 E-value=18 Score=39.64 Aligned_cols=82 Identities=11% Similarity=0.205 Sum_probs=52.4
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEE
Q 008139 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (576)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (576)
.+++.+||-|+.|.|..+++- +|++ +....+. +-+-..+.|-..-++++---.++.-..+.+...++++.+|.+
T Consensus 4 ~~yIlAiDqGTTssRaivfd~--~g~i--va~~q~e--~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~iaa 77 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE--DGNI--VAIAQRE--FTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEIAA 77 (499)
T ss_pred ccEEEEEecCCcceeEEEECC--CCCc--hhhhhhh--hhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccceEE
Confidence 467999999999999999964 3443 2222221 111233446666666655555555666666777888888988
Q ss_pred Eeehhhhh
Q 008139 92 VATAAVRA 99 (576)
Q Consensus 92 vATsAvR~ 99 (576)
+|=+--|+
T Consensus 78 IGITNQRE 85 (499)
T COG0554 78 IGITNQRE 85 (499)
T ss_pred EEeeccce
Confidence 88554444
No 130
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=65.19 E-value=15 Score=40.00 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccc---------c-------CCCCchhhh
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF---------T-------SKKGYHKQS 424 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~---------I-------~~~~h~~Hs 424 (576)
.|+--|+.+|..+...+. + ...|+++||++||||.- + ....|.-+|
T Consensus 73 tHslev~~~~r~~~~~~~----~--------------~~~~~~~~~l~hd~GhpPfgH~gE~~l~~~~~~~ggFEGNAQs 134 (428)
T PRK03007 73 THSLEVAQIGRGIAAGLG----C--------------DPDLVDLAGLAHDIGHPPYGHNGERALDEVAADCGGFEGNAQT 134 (428)
T ss_pred HHHHHHHHHHHHHHHHhC----C--------------CHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCchHHHH
Confidence 799999999999876652 1 13689999999999952 1 234666777
Q ss_pred HHHHHcCCCC--------CCCCHHHHHHHHHHHHhc
Q 008139 425 CHIIMNGDHL--------YGYSTDEIKLIALLTRFH 452 (576)
Q Consensus 425 ~yiI~ns~~l--------~G~s~~E~~~iA~i~ryh 452 (576)
+-|+..-+.- .|++- -...++.++.|-
T Consensus 135 lRIlt~LE~~~~~~~~~~~GLNL-T~atL~gilKYp 169 (428)
T PRK03007 135 LRILTRLEPKVLDPDGRSAGLNL-TRASLDAACKYP 169 (428)
T ss_pred HHHHHHhccccccccccccCccc-CHHHHhheecCC
Confidence 7777655411 15544 234555556663
No 131
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=64.43 E-value=8.2 Score=39.81 Aligned_cols=53 Identities=25% Similarity=0.323 Sum_probs=27.1
Q ss_pred CcEE-EeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCCeEeeEEeec
Q 008139 116 FEVD-VLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVN 172 (576)
Q Consensus 116 ~~i~-vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~Slp 172 (576)
.+++ +.||.- | +..|+...+ ...++.+++||||-||.++++.+|++..+..-.
T Consensus 53 ~Pv~ti~SGPa-a--s~~ga~~~~-~g~~~~i~vDmGGTTtDi~~i~~G~p~~~~~~~ 106 (290)
T PF01968_consen 53 RPVETILSGPA-A--SVIGAAARL-TGLENAIVVDMGGTTTDIALIKDGRPEISSEGA 106 (290)
T ss_dssp SGGCTB--SSH-H--HHHHHHH---HT-SSEEEEEE-SS-EEEEEEETTEE-------
T ss_pred hHHHHhhcCHH-H--hHhhhhhhc-CCCCCEEEEeCCCCEEEEEEEECCeeecccccc
Confidence 4555 455554 2 333444411 123569999999999999999999986554433
No 132
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=64.09 E-value=32 Score=38.74 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=41.8
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHCCCCcccEEE
Q 008139 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTRA 91 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (576)
+..||+||.|+|..+++. +|++ +.....++.+-. ...| ...++. .+..+++++ ++++..+++..+|.+
T Consensus 2 ~lgID~GTts~Ka~l~d~--~G~i--~~~~~~~~~~~~--~~~g~~eqdp~~~~~~~~~~i~---~~~~~~~~~~~~I~~ 72 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDS--TGDI--LALAAQNIKTWT--PSSGLEGQSSVYIWQAICNCVK---QVLAESKVDPNSVKG 72 (541)
T ss_pred EEEEEecCcCEEEEEEcC--CCCE--EEEEEeeeeecc--CCCCcccCCHHHHHHHHHHHHH---HHHHHcCCChhheEE
Confidence 568999999999999974 4643 443333332211 1112 223433 333344444 455556666557888
Q ss_pred Eeehh
Q 008139 92 VATAA 96 (576)
Q Consensus 92 vATsA 96 (576)
++-++
T Consensus 73 Igis~ 77 (541)
T TIGR01315 73 IGFDA 77 (541)
T ss_pred EEecc
Confidence 88665
No 133
>PRK13317 pantothenate kinase; Provisional
Probab=63.89 E-value=1.8e+02 Score=29.81 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=41.4
Q ss_pred cCCcEEEeChHHHHHHHHhhhhccC---CCCCCceEEEEeCCCceeEEEeeCCeEeeEEeechhHHHHHH
Q 008139 114 VGFEVDVLTGEQEAKFVYMGVLQFL---PVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSE 180 (576)
Q Consensus 114 tG~~i~vIsg~eEA~l~~~gv~~~l---~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e 180 (576)
.|+++.= .+|-.-...|+..-+ ..+..+.++++||+|-. ++.+++++..+.-.-.+|--.+..
T Consensus 67 ~~~~~~~---v~E~~a~~~g~~~l~~~~~~~~~~~~i~~iG~g~s-i~~~~g~~~~r~~Gt~iGGgt~~g 132 (277)
T PRK13317 67 YGYPIAE---FVEFEATGLGVRYLLKEEGHDLNDYIFTNIGTGTS-IHYVDGNSQRRVGGTGIGGGTIQG 132 (277)
T ss_pred cCCCeee---eHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCceE-EEEEeCCceEEEccccccHHHHHH
Confidence 5666422 466666666766544 11234589999999966 888888887777777777754443
No 134
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=63.30 E-value=1.2e+02 Score=27.66 Aligned_cols=100 Identities=14% Similarity=0.193 Sum_probs=62.4
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEe
Q 008139 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (576)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (576)
+++.|+|=+|..++.+...+ +|.+.+.+-....+.|..+.. .+.+. +--..|++++++|+|+ +|.+-
T Consensus 2 ~vCGVELkgneaii~ll~~~-~~~~~~pdcr~~k~~l~~~~~------~~~vr---~Fq~~f~kl~~dy~Vd--~VvIk- 68 (138)
T PF11215_consen 2 KVCGVELKGNEAIICLLSLD-DGLFQLPDCRVRKFSLSDDNS------TEEVR---KFQFTFAKLMEDYKVD--KVVIK- 68 (138)
T ss_pred eEEEEEEecCeEEEEEEecC-CCceECCccceeEEEcCCCcc------HHHHH---HHHHHHHHHHHHcCCC--EEEEE-
Confidence 57899999999999999875 677777766666666765533 33333 3344688899999996 44211
Q ss_pred ehhhh--hcCChHHH-HHHHHHHc-CCcEEEeChHHH
Q 008139 94 TAAVR--AAENKDEF-VECVREKV-GFEVDVLTGEQE 126 (576)
Q Consensus 94 TsAvR--~A~N~~~f-l~~i~~~t-G~~i~vIsg~eE 126 (576)
--+-. -|-.+--| ++.+-+.. +++|+++|+.+=
T Consensus 69 ~R~~KGKfAGga~~FKmEaaIQL~~~~~V~lvs~~~i 105 (138)
T PF11215_consen 69 ERATKGKFAGGAVGFKMEAAIQLIDDVEVELVSPATI 105 (138)
T ss_pred ecccCCCccCCchhHHHHHHHHhcCCCcEEEECHHHH
Confidence 10000 02222223 34333333 899999998753
No 135
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional
Probab=62.35 E-value=11 Score=41.97 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcccc-cchhhhhhcccC---cchHHHHHHHHHHhhccc
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKL-YNNQVKLIASFE---DKDLEYLEAACLLHNIGH 413 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l-~~~~~~~~~~~~---~~~r~LL~~AalLHdIG~ 413 (576)
.|+--|+.+|..|...+.....- +.... ..++ .....++++||++||||.
T Consensus 68 tHSleV~~i~r~i~~~i~~~l~~~~~~~~---~~~~~~~~~~~~lveaa~L~HDiGh 121 (503)
T PRK04926 68 THSLEVQQVGRYIAKEILSRLKEQKLLEA---YGLDELTGPFESIVEMACLMHDIGN 121 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccc---ccccccccchHHHHHHHHHHhcCCC
Confidence 67777777777666555321100 00000 0011 122479999999999995
No 136
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=59.14 E-value=23 Score=39.02 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=41.9
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCH-HHHHHHHHHHHHHHHHHHHCCCCcccEEEEe
Q 008139 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SIST-QSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (576)
Q Consensus 17 vIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g--~Ls~-e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (576)
.||||++++|..+++. +|+ ++.....+..... ...| ..++ +-++.++++++++ +++++.+..+|.+|+
T Consensus 2 gIDiGtt~ik~~l~d~--~g~--i~~~~~~~~~~~~--~~~g~~e~d~~~~~~~l~~~i~~~---~~~~~~~~~~I~gIg 72 (481)
T TIGR01312 2 GIDLGTSGVKALLVDE--QGE--VIASGSAPHTVIS--PHPGWSEQDPEDWWDATEEAIKEL---LEQASEMGQDIKGIG 72 (481)
T ss_pred ceeecCcceEEEEECC--CCC--EEEEEeecccccC--CCCCCeeeCHHHHHHHHHHHHHHH---HHhcCCCcccEEEEE
Confidence 5999999999999974 454 3444444433211 1122 2223 3345555555544 456676656788888
Q ss_pred ehhh
Q 008139 94 TAAV 97 (576)
Q Consensus 94 TsAv 97 (576)
-++.
T Consensus 73 vs~~ 76 (481)
T TIGR01312 73 ISGQ 76 (481)
T ss_pred EecC
Confidence 7754
No 137
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=58.98 E-value=32 Score=38.19 Aligned_cols=78 Identities=12% Similarity=0.086 Sum_probs=52.9
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEE
Q 008139 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSS-CSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (576)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~-g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (576)
+.+-.||+||.|.|-.|++.. +|. .|....++++....-... -.=+.+-++..|.+++.-.+ +.||++.+|..
T Consensus 3 ~~~iGvDvGTgSaRA~v~D~~-~G~--~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~---~agv~~~~V~g 76 (544)
T COG1069 3 AYVIGVDVGTGSARAGVFDCQ-TGT--LLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVA---KAGVDPADVVG 76 (544)
T ss_pred cEEEEEeecCCceeEEEEEcC-CCc--chhhcccceeccccCccccccCHHHHHHHHHHHHHHHHH---HcCCChhHeeE
Confidence 456789999999999999986 453 455566665544332111 12367788888888876655 45898888888
Q ss_pred Eeehh
Q 008139 92 VATAA 96 (576)
Q Consensus 92 vATsA 96 (576)
++=.|
T Consensus 77 IGvDa 81 (544)
T COG1069 77 IGVDA 81 (544)
T ss_pred EEEcc
Confidence 77443
No 138
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=58.56 E-value=1.2e+02 Score=30.26 Aligned_cols=133 Identities=14% Similarity=0.031 Sum_probs=72.9
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEee
Q 008139 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (576)
+..||||.+++|+.+++.. + +++.+.+.++. . .-.++-++.+.+.++.+.... +.. .-..||+
T Consensus 2 ~lgidiggt~i~~~l~d~~--g--~i~~~~~~~~~--~------~~~~~~~~~i~~~i~~~~~~~---~~~--~gIgv~~ 64 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDEN--L--QRIWHKRVPTP--R------EDYPQLLQILRDLTEEADTYC---GVQ--GSVGIGI 64 (256)
T ss_pred EEEEEECCCcEEEEEECCC--C--CEEEEEEecCC--C------cCHHHHHHHHHHHHHHHHhhc---CCC--ceEEEEe
Confidence 5799999999999999763 4 34544444321 0 113455666666666554321 110 1122333
Q ss_pred hhh--------hhc----CChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeC
Q 008139 95 AAV--------RAA----ENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKR 162 (576)
Q Consensus 95 sAv--------R~A----~N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~ 162 (576)
..+ +.+ -+.-.+.+.+++++|++|.+-+.-.=+-+.-.-.-... ..++.+.+-+|.| +-..++-+
T Consensus 65 pG~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~~pV~leNDanaaAlaE~~~g~~~--~~~~~v~i~lgtG-iG~giv~~ 141 (256)
T PRK13311 65 PGLPNADDGTVFTANVPSAMGQPLQADLSRLIQREVRIDNDANCFALSEAWDPEFR--TYPTVLGLILGTG-VGGGLIVN 141 (256)
T ss_pred cCcEECCCCEEEccCCCcccCCChHHHHHHHHCCCEEEEchhhHHHHHHHHhcCCC--CCCcEEEEEECcC-eEEEEEEC
Confidence 321 111 12346778888999999999887776655443111111 1245677777744 33345556
Q ss_pred CeEee
Q 008139 163 GKVVF 167 (576)
Q Consensus 163 ~~~~~ 167 (576)
|++..
T Consensus 142 G~l~~ 146 (256)
T PRK13311 142 GSIVS 146 (256)
T ss_pred CEEec
Confidence 66543
No 139
>PLN02295 glycerol kinase
Probab=57.22 E-value=37 Score=37.87 Aligned_cols=76 Identities=11% Similarity=0.172 Sum_probs=42.8
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHHH-HHHHHHHHHHHHHHHHCCCCccc---
Q 008139 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQSQ-ARSVESLLMFRDIIQSHNISRDH--- 88 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g--~Ls~e~i-~r~~~~L~~f~~~~~~~~v~~~~--- 88 (576)
+..||+||.|+|..+++. +|+. +.....+..+ .....| ...++.+ +.++++++ +++++.++++.+
T Consensus 2 vlgID~GTts~Ka~l~d~--~G~~--~~~~~~~~~~--~~~~~G~~Eqdp~~~w~~~~~~i~---~~~~~~~~~~~~i~~ 72 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDR--DARP--VASHQVEFTQ--IYPQAGWVEHDPMEILESVLTCIA---KALEKAAAKGHNVDS 72 (512)
T ss_pred EEEEecCCCceEEEEECC--CCCE--EEEEeecccc--cCCCCCcEeeCHHHHHHHHHHHHH---HHHHHcCCCcccccc
Confidence 568999999999999974 5654 3333333222 111122 2344443 33344444 444555665444
Q ss_pred -EEEEeehhhhh
Q 008139 89 -TRAVATAAVRA 99 (576)
Q Consensus 89 -i~~vATsAvR~ 99 (576)
|.+|+-++.+.
T Consensus 73 ~i~aIg~s~q~~ 84 (512)
T PLN02295 73 GLKAIGITNQRE 84 (512)
T ss_pred ceEEEEEecCcc
Confidence 68888776654
No 140
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=55.76 E-value=18 Score=39.37 Aligned_cols=80 Identities=11% Similarity=0.083 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHHH--hhhhccCCCCCCceEE
Q 008139 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFVY--MGVLQFLPVFDRLVLS 147 (576)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~e-EA~l~~--~gv~~~l~~~~~~~lv 147 (576)
++++..+.++.+|.. ++.+|....+.+..-.+.+.+.++ .-|+++.+.++-+ |..+.- .++..... .+.-+|
T Consensus 10 ~~~~l~~~l~~~g~~--~vlivt~~~~~~~g~~~~v~~~L~-~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~--~~~D~I 84 (414)
T cd08190 10 VTAEVGMDLKNLGAR--RVCLVTDPNLAQLPPVKVVLDSLE-AAGINFEVYDDVRVEPTDESFKDAIAFAKK--GQFDAF 84 (414)
T ss_pred HHHHHHHHHHHcCCC--eEEEEECcchhhcchHHHHHHHHH-HcCCcEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEE
Confidence 455555566677774 677777776766444566666655 3589999887532 222211 11111111 111389
Q ss_pred EEeCCCce
Q 008139 148 VDIGGGST 155 (576)
Q Consensus 148 iDIGGGSt 155 (576)
+-|||||.
T Consensus 85 IaiGGGSv 92 (414)
T cd08190 85 VAVGGGSV 92 (414)
T ss_pred EEeCCccH
Confidence 99999995
No 141
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=51.96 E-value=1.6e+02 Score=30.03 Aligned_cols=132 Identities=11% Similarity=0.060 Sum_probs=72.5
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEee
Q 008139 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (576)
+..||||.+.+++.+++.. |. ++.+.+.++ . . .-.++.++.+.+.++++.. +++.. .-.+||+
T Consensus 2 ~lgidig~t~i~~~l~d~~--g~--i~~~~~~~~--~----~--~~~~~~~~~i~~~i~~~~~---~~~~~--~~igia~ 64 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEK--LE--LQWEERVPT--P----R--DSYDAFLDAVCELVAEADQ---RFGCK--GSVGIGI 64 (303)
T ss_pred eEEEEeCCCcEEEEEECCC--Cc--EEEEEEecC--C----C--cCHHHHHHHHHHHHHHHHh---hcCCc--ceEEEeC
Confidence 5789999999999999763 43 444333322 1 1 1134455555555665542 22211 1133333
Q ss_pred hhhhh-------cCC-----hHHHHHHHHHHcCCcEEEeChHHHHHHHH--hhhhccCCCCCCceEEEEeCCCceeEEEe
Q 008139 95 AAVRA-------AEN-----KDEFVECVREKVGFEVDVLTGEQEAKFVY--MGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (576)
Q Consensus 95 sAvR~-------A~N-----~~~fl~~i~~~tG~~i~vIsg~eEA~l~~--~gv~~~l~~~~~~~lviDIGGGStEl~~~ 160 (576)
...=+ +.| .-.+.+.+++++|++|.+-+.-.=+-+.- .|... ..++.+.+.+|.| +--.++
T Consensus 65 pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pV~ieNDa~aaalaE~~~g~~~----~~~~~~~l~~gtG-iG~giv 139 (303)
T PRK13310 65 PGMPETEDGTLYAANVPAASGKPLRADLSARLGRDVRLDNDANCFALSEAWDDEFT----QYPLVMGLILGTG-VGGGLV 139 (303)
T ss_pred CCcccCCCCEEeccCcccccCCcHHHHHHHHHCCCeEEeccHhHHHHHHhhhcccc----CCCcEEEEEecCc-eEEEEE
Confidence 22111 112 23577889999999999888765443332 12111 1245788888865 344456
Q ss_pred eCCeEeeE
Q 008139 161 KRGKVVFC 168 (576)
Q Consensus 161 ~~~~~~~~ 168 (576)
-+|++...
T Consensus 140 ~~G~l~~G 147 (303)
T PRK13310 140 FNGKPISG 147 (303)
T ss_pred ECCEEeeC
Confidence 67776544
No 142
>PRK09557 fructokinase; Reviewed
Probab=51.54 E-value=1.5e+02 Score=30.40 Aligned_cols=133 Identities=16% Similarity=0.146 Sum_probs=70.8
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEee
Q 008139 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (576)
+-.||||.+++++.+++. +|. ++.+.+.++. . .-.++.++.+.+.++++.. .++. ..-.+||+
T Consensus 2 ~lgidig~t~~~~~l~d~--~g~--i~~~~~~~~~------~--~~~~~~~~~i~~~i~~~~~---~~~~--~~gIgi~~ 64 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDD--AGE--ELFRKRLPTP------R--DDYQQTIEAIATLVDMAEQ---ATGQ--RGTVGVGI 64 (301)
T ss_pred EEEEEECCCcEEEEEECC--CCC--EEEEEEecCC------C--CCHHHHHHHHHHHHHHHHh---hcCC--ceEEEecC
Confidence 568999999999999975 343 3443333221 0 1123444444444444432 2221 11234444
Q ss_pred hhhhh--------cC----ChHHHHHHHHHHcCCcEEEeChHHHHHHHH--hhhhccCCCCCCceEEEEeCCCceeEEEe
Q 008139 95 AAVRA--------AE----NKDEFVECVREKVGFEVDVLTGEQEAKFVY--MGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (576)
Q Consensus 95 sAvR~--------A~----N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~--~gv~~~l~~~~~~~lviDIGGGStEl~~~ 160 (576)
...=+ +. |.-.+.+.+++++|++|.+.+.-.=+-+.- .|... ..++.+.+.+|.| +-..++
T Consensus 65 pG~vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~~pv~~~NDa~aaA~aE~~~g~~~----~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 65 PGSISPYTGLVKNANSTWLNGQPLDKDLSARLNREVRLANDANCLAVSEAVDGAAA----GKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred cccCcCCCCeEEecCCccccCCCHHHHHHHHHCCCEEEccchhHHHHHHHHhcccC----CCCcEEEEEEccc-eEEEEE
Confidence 43221 11 334567788899999999887655443332 12211 2245778888744 334455
Q ss_pred eCCeEeeEE
Q 008139 161 KRGKVVFCE 169 (576)
Q Consensus 161 ~~~~~~~~~ 169 (576)
-+|++....
T Consensus 140 ~~G~l~~G~ 148 (301)
T PRK09557 140 INGRVHIGG 148 (301)
T ss_pred ECCEEEecC
Confidence 677776543
No 143
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=51.05 E-value=53 Score=36.56 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=40.4
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHCCCCcccEEE
Q 008139 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTRA 91 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (576)
+.+||+||.++|..+++. +|++ +.....+...- ....| ..+++. .+.+++++++ +++..+.+ .+|.+
T Consensus 2 ~lgiDiGtt~~K~~l~d~--~g~i--~~~~~~~~~~~--~~~~g~~e~d~~~~~~~~~~~i~~---~~~~~~~~-~~I~~ 71 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEE--NGKI--VAKSSIGYPLY--TPASGMAEENPEEIFEAVLVTIRE---VSINLEDE-DEILF 71 (505)
T ss_pred EEEEeccccceEEEEEcC--CCCE--EEEEEeecccc--cCCCCCeeeCHHHHHHHHHHHHHH---HHHhCCCc-CceEE
Confidence 568999999999999973 5644 33333322211 11112 223333 3334444444 44444443 46888
Q ss_pred Eeehhhh
Q 008139 92 VATAAVR 98 (576)
Q Consensus 92 vATsAvR 98 (576)
++-++.+
T Consensus 72 Igis~~~ 78 (505)
T TIGR01314 72 VSFSTQM 78 (505)
T ss_pred EEEeccc
Confidence 8877664
No 144
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=50.74 E-value=22 Score=37.95 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChH-HHHHHHH--hhhhccCCCCCCceEE
Q 008139 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGE-QEAKFVY--MGVLQFLPVFDRLVLS 147 (576)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~-eEA~l~~--~gv~~~l~~~~~~~lv 147 (576)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ +-|+++.+.++- .+..+.- .++.. .... +.-+|
T Consensus 11 ~~~~l~~~l~~~g~~--~~liv~~~~~~~~~~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~-~~~~-~~d~I 85 (370)
T cd08192 11 AIKELPAECAELGIK--RPLIVTDPGLAALGLVARVLALLE-DAGLAAALFDEVPPNPTEAAVEAGLAA-YRAG-GCDGV 85 (370)
T ss_pred HHHHHHHHHHHcCCC--eEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHH-HHhc-CCCEE
Confidence 345555566667763 566676666655444566666554 358898888653 2222221 11111 1111 22389
Q ss_pred EEeCCCce
Q 008139 148 VDIGGGST 155 (576)
Q Consensus 148 iDIGGGSt 155 (576)
+=|||||+
T Consensus 86 IaiGGGSv 93 (370)
T cd08192 86 IAFGGGSA 93 (370)
T ss_pred EEeCCchH
Confidence 99999995
No 145
>PRK15027 xylulokinase; Provisional
Probab=50.50 E-value=57 Score=36.04 Aligned_cols=76 Identities=14% Similarity=0.303 Sum_probs=40.3
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHH-HHHHHHHHHHHHHHHHHCCCCcccEEEEe
Q 008139 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQS-QARSVESLLMFRDIIQSHNISRDHTRAVA 93 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (576)
+-.||+||.|+|.++++. +|++ +...+....+...-...-..+++. .+.++++++ +++++... .+|.+++
T Consensus 2 ~lgID~GTts~Ka~l~d~--~G~v--va~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~---~l~~~~~~--~~I~aI~ 72 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNE--QGEV--VASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMK---ALGDQHSL--QDVKALG 72 (484)
T ss_pred EEEEEecccceEEEEEcC--CCCE--EEEEeecccccCCCCCccccCHHHHHHHHHHHHH---HHHHhCCc--cceeEEE
Confidence 568999999999999973 5654 433333322211100011233333 223333333 34444332 4688998
Q ss_pred ehhhhh
Q 008139 94 TAAVRA 99 (576)
Q Consensus 94 TsAvR~ 99 (576)
-++.+.
T Consensus 73 is~q~~ 78 (484)
T PRK15027 73 IAGQMH 78 (484)
T ss_pred EecCCC
Confidence 877664
No 146
>PRK13324 pantothenate kinase; Reviewed
Probab=49.53 E-value=2.9e+02 Score=27.91 Aligned_cols=131 Identities=12% Similarity=0.171 Sum_probs=66.1
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeecc-CCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEe
Q 008139 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGR-DLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~-~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (576)
+-+||||=.++++-+++- ++ .+... |+.. +.. ..++| ....+...+..+++....+..+.
T Consensus 2 iL~iDiGNT~ik~gl~~~---~~--~~~~~----r~~t~~~~---~t~de-------~~~~l~~~~~~~~~~~~~i~~vi 62 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG---DR--IVSQI----RYATSSVD---STSDQ-------MGVFLRQALRENSVDLGKIDGCG 62 (258)
T ss_pred EEEEEeCCCceEEEEEEC---CE--EEEEE----EEecCccc---cchHH-------HHHHHHHHHHhcCCCccCCCeEE
Confidence 457899999999999972 22 23222 2221 111 11111 12223344444444322334344
Q ss_pred ehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHH-H--------------HHHhhhhccCCCCCCceEEEEeCCCceeEE
Q 008139 94 TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEA-K--------------FVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (576)
Q Consensus 94 TsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~eEA-~--------------l~~~gv~~~l~~~~~~~lviDIGGGStEl~ 158 (576)
-|.|.-+ =...|.+.+.+.+|.++.+++.+... . ....|+.+.. +..+.+|+|.|..-|==.
T Consensus 63 isSVvP~-l~~~l~~~~~~~~~~~~~~v~~~~~~l~~~y~~p~~lG~DR~~~~vaA~~~~--~~~~~iViD~GTA~T~d~ 139 (258)
T PRK13324 63 ISSVVPH-LNYSLGSAVIKYFNIKPFFISMDTTDLDMSAVEAHQVGADRIASCISAIADH--PNKDLLIIDLGTATTFDL 139 (258)
T ss_pred EEeCcch-hHHHHHHHHHHHhCCCeEEEecCCccceeecCChhhccHHHHHHHHHHHHhc--CCCCEEEEEcCCceEEEE
Confidence 4444432 23334466677788888777533211 0 0112222222 234689999999988666
Q ss_pred EeeCCeEee
Q 008139 159 IGKRGKVVF 167 (576)
Q Consensus 159 ~~~~~~~~~ 167 (576)
+-.+|+..-
T Consensus 140 v~~~g~~~G 148 (258)
T PRK13324 140 VTKDKKYLS 148 (258)
T ss_pred EcCCCeEEE
Confidence 656665543
No 147
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=49.52 E-value=70 Score=34.33 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-----HHHHHHhhhhccCCCCCCce
Q 008139 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-----EAKFVYMGVLQFLPVFDRLV 145 (576)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~e-----EA~l~~~gv~~~l~~~~~~~ 145 (576)
++.+..+.++.+|.. ++.+|....++...-.+.+.+.++ +.|+.+.+.+|.+ |.-.......... +.-
T Consensus 18 ~~~~l~~~~~~~g~~--~~livt~~~~~~~g~~~~v~~~L~-~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~----~~D 90 (383)
T PRK09860 18 SLTDAMNMMADYGFT--RTLIVTDNMLTKLGMAGDVQKALE-ERNIFSVIYDGTQPNPTTENVAAGLKLLKEN----NCD 90 (383)
T ss_pred HHHHHHHHHHhcCCC--EEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEeCCCCCCcCHHHHHHHHHHHHHc----CCC
Confidence 455566667778874 677777666666544556665555 4589888888732 2111111111111 113
Q ss_pred EEEEeCCCce
Q 008139 146 LSVDIGGGST 155 (576)
Q Consensus 146 lviDIGGGSt 155 (576)
.|+=|||||+
T Consensus 91 ~IiaiGGGS~ 100 (383)
T PRK09860 91 SVISLGGGSP 100 (383)
T ss_pred EEEEeCCchH
Confidence 8999999995
No 148
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=48.70 E-value=34 Score=36.77 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-H-HHH-HHhhhhccCCCCCCceEE
Q 008139 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-E-AKF-VYMGVLQFLPVFDRLVLS 147 (576)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~e-E-A~l-~~~gv~~~l~~~~~~~lv 147 (576)
++++..+.++.+| . ++.+|....+.+..-.+.+.+.++ +.|+++.+.+|.+ + -.. ...++..... . +.-.|
T Consensus 10 ~l~~l~~~~~~~g-~--~~livt~~~~~~~~~~~~v~~~L~-~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~-~-~~D~I 83 (386)
T cd08191 10 QRRQLPRLAARLG-S--RALIVTDERMAGTPVFAELVQALA-AAGVEVEVFDGVLPDLPRSELCDAASAAAR-A-GPDVI 83 (386)
T ss_pred HHHHHHHHHHHcC-C--eEEEEECcchhhcchHHHHHHHHH-HcCCeEEEECCCCCCcCHHHHHHHHHHHHh-c-CCCEE
Confidence 3445555666677 3 567777766666444445544443 4589999988765 1 111 1122211111 1 22389
Q ss_pred EEeCCCce
Q 008139 148 VDIGGGST 155 (576)
Q Consensus 148 iDIGGGSt 155 (576)
+=|||||+
T Consensus 84 IaiGGGS~ 91 (386)
T cd08191 84 IGLGGGSC 91 (386)
T ss_pred EEeCCchH
Confidence 99999995
No 149
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=47.58 E-value=31 Score=37.95 Aligned_cols=162 Identities=15% Similarity=0.191 Sum_probs=86.3
Q ss_pred CCceEE-EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcC------CCCCHHHHHH-HH-HHHHHHHHHHHH
Q 008139 11 PQTLFA-SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSS------CSISTQSQAR-SV-ESLLMFRDIIQS 81 (576)
Q Consensus 11 ~~~~~A-vIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~------g~Ls~e~i~r-~~-~~L~~f~~~~~~ 81 (576)
++..|+ ++|+||.+||+.++++..+...+.....+.+++.|+.+..- |.=..+++.. ++ ..++.|-..|.+
T Consensus 161 ~~~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~~i~~~~D~a~~l~~~vVe~i~~~id~~~~e 240 (614)
T COG3894 161 KNEAYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDFAIMMGPDGAEGLQIAVVEAINQLIDKLCEE 240 (614)
T ss_pred cceeeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHHHHHhCcchhhhhHHHHHHHHHHHHhhhchh
Confidence 445564 79999999999999997433356777888889999887521 1111222222 12 234557778888
Q ss_pred CCCCcccE---EEEeehhhhhc---CChH-----HHHHHHHHHcCCcEEEeC-hHHHH---H------------HHHhhh
Q 008139 82 HNISRDHT---RAVATAAVRAA---ENKD-----EFVECVREKVGFEVDVLT-GEQEA---K------------FVYMGV 134 (576)
Q Consensus 82 ~~v~~~~i---~~vATsAvR~A---~N~~-----~fl~~i~~~tG~~i~vIs-g~eEA---~------------l~~~gv 134 (576)
++|....| .+++.+-+--| .|.. +|..+..+ ++++.-+. |-+.- + -..+|.
T Consensus 241 ~~V~~n~I~~svfqgn~Im~h~faG~~~~~l~~~p~~~~~~r--~v~~~a~~iGl~~n~n~el~vlP~Ia~~VGADAla~ 318 (614)
T COG3894 241 GEVCGNPIQLSVFQGNPIMDHAFAGIDPTELGGSPFVKRVSR--VVPASASEIGLEVNRNCELFVLPAIAHEVGADALAM 318 (614)
T ss_pred ccccccchhheeccCchHHHHHhcCCCHHHhcCCcccccccc--ceecchhhcchhhcCCCEEEecchhccccchHHHHH
Confidence 87654332 33333332222 2211 12222221 11111111 11111 0 011111
Q ss_pred h--ccCCCCCCceEEEEeCCCceeEEEeeCCeEeeEEeechhHH
Q 008139 135 L--QFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHV 176 (576)
Q Consensus 135 ~--~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~v 176 (576)
. ..+-..++-.+++|+|. +.|++++.++++. +.|-|-|+.
T Consensus 319 il~tg~~~sdevslvtD~GT-NaEivlg~~~ri~-t~SaaaGPA 360 (614)
T COG3894 319 ILSTGIHDSDEVSLVTDYGT-NAEIVLGNRDRIV-TASAAAGPA 360 (614)
T ss_pred HHhccCccccceEEEEeecc-cceEEeccCCEEE-EecCCCCcc
Confidence 1 11212334579999986 7899999988776 558888874
No 150
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=47.02 E-value=53 Score=35.08 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHH-HHH--HHhhhhccCCCCCCceEE
Q 008139 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKF--VYMGVLQFLPVFDRLVLS 147 (576)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~eE-A~l--~~~gv~~~l~~~~~~~lv 147 (576)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ +.|+++.+.++-++ ..+ ...++..... .+.-.|
T Consensus 15 ~l~~l~~~l~~~g~~--~~livt~~~~~~~~~~~~v~~~L~-~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~d~I 89 (377)
T cd08188 15 ALKLAGRYARRLGAK--KVLLVSDPGVIKAGWVDRVIESLE-EAGLEYVVFSDVSPNPRDEEVMAGAELYLE--NGCDVI 89 (377)
T ss_pred HHHHHHHHHHHcCCC--eEEEEeCcchhhCccHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHHHHh--cCCCEE
Confidence 445555566677764 667777666766544566666554 55888888886432 211 1112211111 122389
Q ss_pred EEeCCCce
Q 008139 148 VDIGGGST 155 (576)
Q Consensus 148 iDIGGGSt 155 (576)
+=|||||+
T Consensus 90 IaiGGGsv 97 (377)
T cd08188 90 IAVGGGSP 97 (377)
T ss_pred EEeCCchH
Confidence 99999995
No 151
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=46.69 E-value=19 Score=39.10 Aligned_cols=158 Identities=23% Similarity=0.327 Sum_probs=72.1
Q ss_pred EEEEEecccceEEEEEEEeCCCC-EEEEEeeeeeeeeccCCCcC--CCCCHHHHHH----HHHHHHH-HHHHHHHCCCCc
Q 008139 15 FASIDMGTSSFKLLIIRAYPNGK-FLTIDTLKQPVILGRDLSSS--CSISTQSQAR----SVESLLM-FRDIIQSHNISR 86 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~-~~~l~~~k~~vrLg~~~~~~--g~Ls~e~i~r----~~~~L~~-f~~~~~~~~v~~ 86 (576)
=.+|||||.++.+.+++.. +|. +......+-....|.++-+- -..+++..++ +++.|.+ +.++|.+.|+++
T Consensus 3 GiAvDiGTTti~~~L~dl~-~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~ 81 (412)
T PF14574_consen 3 GIAVDIGTTTIAAYLVDLE-TGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISP 81 (412)
T ss_dssp EEEEEE-SSEEEEEEEETT-T--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--G
T ss_pred EEEEEcchhheeeEEEECC-CCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3589999999999999986 454 33444445556788886421 0112222222 3334443 345566667766
Q ss_pred ccE---EEEeehhhhh------------cCChHHHHHHH---HHHcCC------cEEEeC---hHHHHHHHHhhhh-ccC
Q 008139 87 DHT---RAVATAAVRA------------AENKDEFVECV---REKVGF------EVDVLT---GEQEAKFVYMGVL-QFL 138 (576)
Q Consensus 87 ~~i---~~vATsAvR~------------A~N~~~fl~~i---~~~tG~------~i~vIs---g~eEA~l~~~gv~-~~l 138 (576)
.+| .++|-.+|-- ++=...|.+.. -.++|+ +|.++. |--=+-.. -|+. ..+
T Consensus 82 ~~I~~i~i~GNt~M~hLllGl~~~~L~~~Pf~p~~~~~~~~~a~~lgl~~~~~~~v~~~P~i~~fVG~Div-Agl~a~~~ 160 (412)
T PF14574_consen 82 EDIYEIVIVGNTTMLHLLLGLDPEGLGRAPFVPVFRGGVEIPAAELGLEINPDARVYILPNISGFVGADIV-AGLLATGM 160 (412)
T ss_dssp GGEEEEEEEE-HHHHHHHHT---GGGSSTTT--S-S----EEHHHHT-SS-TTSEEEE----BTTB-HHHH-HHHHHHTC
T ss_pred HHeEEEEEEecHHHHHHHcCCChHHhccCCcccccCCCcEEeHHHhCcccCCCCEEEEcCcccccccHHHH-HHHHhcCc
Confidence 554 5556555522 22111111111 112344 233322 11111111 1111 122
Q ss_pred CCCCCceEEEEeCCCceeEEEeeCCeEeeEEeechhHH
Q 008139 139 PVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHV 176 (576)
Q Consensus 139 ~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~v 176 (576)
...+++.|++|||. +.|++++.++++ ++.|-|-|+.
T Consensus 161 ~~~~~~~LliDiGT-NgEivL~~~~~~-~a~S~AAGPA 196 (412)
T PF14574_consen 161 DESDEPSLLIDIGT-NGEIVLGNGGKL-LACSTAAGPA 196 (412)
T ss_dssp CC-SS-EEEEEESS-CEEEEEE-SS-E-EEEEEE--TC
T ss_pred ccCCCcEEEEEecC-CeEEEEecCCEE-EEEeccCChh
Confidence 23456799999987 789999999776 4678888874
No 152
>PRK00976 hypothetical protein; Provisional
Probab=45.39 E-value=3.5e+02 Score=28.46 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCcEEEeChHH--------------------HHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEeeCC
Q 008139 104 DEFVECVREKVGFEVDVLTGEQ--------------------EAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRG 163 (576)
Q Consensus 104 ~~fl~~i~~~tG~~i~vIsg~e--------------------EA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~ 163 (576)
..+.++++ +.|+|+-+|.|-- ---..|+++. .....++++.|||+ .|=...+++|
T Consensus 94 ~~v~~~i~-~s~ip~~~iPGvh~~~~t~~p~~r~~sh~~s~eK~~ia~~a~~---~~~~~~fi~~diss-ntv~~~V~~g 168 (326)
T PRK00976 94 TRVYDEIK-ESGIPAVVIPGLHRGSPTLDPRFRVYSHIASPEKIGIAYNAYK---LFGFENFIVSDISS-NTVTLLVKDG 168 (326)
T ss_pred HHHHHHHH-hCCCCEEEeCceecCCCCCCHHHHHhccCCCHHHHHHHHHHHh---hcCCCcEEEEeccc-cEEEEEEECC
Confidence 45677774 4688887777644 1122233322 23346799999999 8888899999
Q ss_pred eEeeEE
Q 008139 164 KVVFCE 169 (576)
Q Consensus 164 ~~~~~~ 169 (576)
+++...
T Consensus 169 kIvgg~ 174 (326)
T PRK00976 169 KIVGAF 174 (326)
T ss_pred EEEccc
Confidence 998653
No 153
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=44.85 E-value=88 Score=27.75 Aligned_cols=53 Identities=11% Similarity=0.216 Sum_probs=37.2
Q ss_pred HHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHH
Q 008139 75 FRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFV 130 (576)
Q Consensus 75 f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~eEA~l~ 130 (576)
+.+.++.++++...|.++||-.++ ..+.-+-++-++.|++++..+.+|=....
T Consensus 21 i~~~l~~~~~~~~~i~~iasi~~K---~~E~~l~~~A~~l~~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 21 IEQALAEAGLSPRSIAAIASIDIK---ADEPGLLELAEELGIPLRFFSAEELNAVE 73 (121)
T ss_dssp HHHHHHHCT--GGGEEEEEESSSS---S--HHHHHHHHHCTSEEEEE-HHHHHCHH
T ss_pred HHHHHHHcCCChhhccEEEecccc---CCCHHHHHHHHHhCCCeEEECHHHHhcCC
Confidence 445566788988899999998664 44456667777899999999999877554
No 154
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=44.54 E-value=4e+02 Score=28.30 Aligned_cols=26 Identities=19% Similarity=0.498 Sum_probs=21.5
Q ss_pred CCceEEEEeCCCceeEEEeeCCeEeeE
Q 008139 142 DRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (576)
Q Consensus 142 ~~~~lviDIGGGStEl~~~~~~~~~~~ 168 (576)
+.+.+++=+|+|.. .....+|+++..
T Consensus 173 ~~~~I~~hLGtGig-~~ai~~Gk~vdg 198 (351)
T TIGR02707 173 EMNLIVAHMGGGIS-VAAHRKGRVIDV 198 (351)
T ss_pred cCCEEEEEeCCCce-eeeEECCEEEEc
Confidence 34799999999999 778888888754
No 155
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=44.23 E-value=1.9e+02 Score=31.20 Aligned_cols=103 Identities=19% Similarity=0.298 Sum_probs=61.4
Q ss_pred eeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHc-------CCc-EE
Q 008139 48 VILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKV-------GFE-VD 119 (576)
Q Consensus 48 vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~t-------G~~-i~ 119 (576)
|..|.| ++..++||-|.. -+|..+++.+++|==.. -..+|-|- ..+|-+.-++.| |++ ++
T Consensus 137 v~v~~g--~~K~FtPeEiSa--MiL~KMKe~AEayLGkk-v~~AVvTv-------PAYFNDAQrQATKDAGtIAgLnV~R 204 (663)
T KOG0100|consen 137 VKVGGG--ETKVFTPEEISA--MILTKMKETAEAYLGKK-VTHAVVTV-------PAYFNDAQRQATKDAGTIAGLNVVR 204 (663)
T ss_pred EEccCC--cccccCHHHHHH--HHHHHHHHHHHHHhCCc-ccceEEec-------chhcchHHHhhhcccceeccceEEE
Confidence 344443 345788888765 45888999998882211 11233332 124444444444 777 56
Q ss_pred EeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEEe--eCCeE
Q 008139 120 VLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG--KRGKV 165 (576)
Q Consensus 120 vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~--~~~~~ 165 (576)
||+...-|.+.| |.-.. ..+.+.||+|+|||...+++. ++|-+
T Consensus 205 IiNePTaAAIAY-GLDKk--~gEknilVfDLGGGTFDVSlLtIdnGVF 249 (663)
T KOG0100|consen 205 IINEPTAAAIAY-GLDKK--DGEKNILVFDLGGGTFDVSLLTIDNGVF 249 (663)
T ss_pred eecCccHHHHHh-ccccc--CCcceEEEEEcCCceEEEEEEEEcCceE
Confidence 777776665544 43221 235679999999999998864 45543
No 156
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=44.20 E-value=1.1e+02 Score=32.03 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=24.5
Q ss_pred ccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH
Q 008139 87 DHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ 125 (576)
Q Consensus 87 ~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~e 125 (576)
..|...|..| +-..|.+.+.+.+|+++++++-.+
T Consensus 284 ~~I~LtGgga-----~~~gl~~~l~~~l~~~v~~~~P~~ 317 (348)
T TIGR01175 284 DGLVLAGGGA-----TLSGLDAAIYQRLGLPTEVANPFA 317 (348)
T ss_pred ceEEEECccc-----cchhHHHHHHHHHCCCeEecChHH
Confidence 3565555443 445688999999999999988543
No 157
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=42.95 E-value=1.8e+02 Score=26.37 Aligned_cols=94 Identities=15% Similarity=0.219 Sum_probs=57.0
Q ss_pred eEEEEEecccceEEEEEEEeCCCCE-EEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEE
Q 008139 14 LFASIDMGTSSFKLLIIRAYPNGKF-LTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (576)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~-~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (576)
.+-+||.|+-.|=+.|.+. .+.+ .++..... .+ . . ..++.+.+++++|+++ ..+|
T Consensus 5 ~iLalD~G~kriGvAv~d~--~~~~a~pl~~i~~-----~~----~--~--------~~~~~l~~~i~~~~i~---~iVv 60 (138)
T PRK00109 5 RILGLDVGTKRIGVAVSDP--LGGTAQPLETIKR-----NN----G--T--------PDWDRLEKLIKEWQPD---GLVV 60 (138)
T ss_pred cEEEEEeCCCEEEEEEecC--CCCEEcCEEEEEc-----CC----C--c--------hHHHHHHHHHHHhCCC---EEEE
Confidence 4889999998888887753 2322 12211110 00 0 0 2356677788889884 5678
Q ss_pred ee------hhhhhcCChHHHHHHHHHHcCCcEEEeCh---HHHHHHHH
Q 008139 93 AT------AAVRAAENKDEFVECVREKVGFEVDVLTG---EQEAKFVY 131 (576)
Q Consensus 93 AT------sAvR~A~N~~~fl~~i~~~tG~~i~vIsg---~eEA~l~~ 131 (576)
|- +.-..|.-...|.+++++.++++|...+. ..||.-.+
T Consensus 61 GlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~TT~~A~~~l 108 (138)
T PRK00109 61 GLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERLSTVEAERAL 108 (138)
T ss_pred eccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCHHHHHHHH
Confidence 81 11122333458999999999999998875 34555444
No 158
>PRK13331 pantothenate kinase; Reviewed
Probab=42.87 E-value=1.9e+02 Score=29.21 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=19.7
Q ss_pred CCcccccccCCCceEEEEEecccceEEEEEE
Q 008139 1 MATNTSYMQIPQTLFASIDMGTSSFKLLIIR 31 (576)
Q Consensus 1 ~~~~~~~~~~~~~~~AvIDIGSNsirL~I~e 31 (576)
|..|+|| .+-+||||=.++.+-+++
T Consensus 1 ~~~~~~~------~~L~iDiGNT~~~~g~f~ 25 (251)
T PRK13331 1 MMFHTSN------EWLALMIGNSRLHWGYFS 25 (251)
T ss_pred CCCCCCC------cEEEEEeCCCcEEEEEEE
Confidence 4455555 467999999999999997
No 159
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=42.82 E-value=14 Score=24.38 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=19.5
Q ss_pred HHHHcCCCcHHHHHhhcCCCccchhhHH
Q 008139 268 ERLCCGGDGEVERVRRERFFKRRSEFIV 295 (576)
Q Consensus 268 ~~l~~~~~~~~er~~~~gl~~~Radii~ 295 (576)
+.+...+.+ |.+++||+.+..|+.|+
T Consensus 3 ~g~~pas~e--eL~~lpGIG~~tA~~I~ 28 (30)
T PF00633_consen 3 DGLIPASIE--ELMKLPGIGPKTANAIL 28 (30)
T ss_dssp HHHHTSSHH--HHHTSTT-SHHHHHHHH
T ss_pred CCcCCCCHH--HHHhCCCcCHHHHHHHH
Confidence 345566777 89999999999988775
No 160
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=42.60 E-value=82 Score=33.96 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHH--HHhhhhccCCCCCCceEE
Q 008139 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKF--VYMGVLQFLPVFDRLVLS 147 (576)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~e-EA~l--~~~gv~~~l~~~~~~~lv 147 (576)
++++..+.++.+|.. ++.+|+...++++.=-+.+.+.++ +.|+++.+.++-+ |-.+ ...++...-. .+.-+|
T Consensus 36 ~~~~l~~~~~~~g~~--~~lvv~~~~~~~~g~~~~v~~~L~-~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~--~~~D~I 110 (395)
T PRK15454 36 AVSSCGQQAQTRGLK--HLFVMADSFLHQAGMTAGLTRSLA-VKGIAMTLWPCPVGEPCITDVCAAVAQLRE--SGCDGV 110 (395)
T ss_pred HHHHHHHHHHhcCCC--EEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEECCCCCCcCHHHHHHHHHHHHh--cCcCEE
Confidence 344455556667763 667777677766433466665554 4589888876543 2211 1122221111 122389
Q ss_pred EEeCCCce
Q 008139 148 VDIGGGST 155 (576)
Q Consensus 148 iDIGGGSt 155 (576)
+=|||||+
T Consensus 111 iavGGGS~ 118 (395)
T PRK15454 111 IAFGGGSV 118 (395)
T ss_pred EEeCChHH
Confidence 99999995
No 161
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=42.39 E-value=85 Score=33.61 Aligned_cols=77 Identities=13% Similarity=0.232 Sum_probs=44.6
Q ss_pred HHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHH----HhhhhccCCCCCCceE
Q 008139 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV----YMGVLQFLPVFDRLVL 146 (576)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~e-EA~l~----~~gv~~~l~~~~~~~l 146 (576)
+.+..+.++.+|.. ++.+|....+.+..=.+.+.+.++ +.|+++.+.++-+ |..+. ........ +. -+
T Consensus 18 l~~l~~~~~~~g~~--~~lvvtd~~~~~~g~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~---~~-D~ 90 (382)
T PRK10624 18 IGALTDEVKRRGFK--KALIVTDKTLVKCGVVAKVTDVLD-AAGLAYEIYDGVKPNPTIEVVKEGVEVFKAS---GA-DY 90 (382)
T ss_pred HHHHHHHHHhcCCC--EEEEEeCcchhhCcchHHHHHHHH-HCCCeEEEeCCCCCCcCHHHHHHHHHHHHhc---CC-CE
Confidence 44555556667764 677777777766544555555554 4689999987543 21111 11111111 11 38
Q ss_pred EEEeCCCce
Q 008139 147 SVDIGGGST 155 (576)
Q Consensus 147 viDIGGGSt 155 (576)
|+=|||||+
T Consensus 91 IIaiGGGS~ 99 (382)
T PRK10624 91 LIAIGGGSP 99 (382)
T ss_pred EEEeCChHH
Confidence 999999995
No 162
>PLN02669 xylulokinase
Probab=42.23 E-value=91 Score=35.30 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=43.7
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC---------CC--CHHHH-HHHHHHHHHHHHHH
Q 008139 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC---------SI--STQSQ-ARSVESLLMFRDII 79 (576)
Q Consensus 12 ~~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g---------~L--s~e~i-~r~~~~L~~f~~~~ 79 (576)
.+++-.||+||.|+|-+|++. +|+..-.......+.+-+.-...| .+ .+.-. +.+..++++..
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~--~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~--- 81 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDS--NLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA--- 81 (556)
T ss_pred CCeEEEEecccCCeEEEEEcC--CCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH---
Confidence 456889999999999999973 454433222322221211111111 11 11122 44455555543
Q ss_pred HHCCCCcccEEEEeehhhh
Q 008139 80 QSHNISRDHTRAVATAAVR 98 (576)
Q Consensus 80 ~~~~v~~~~i~~vATsAvR 98 (576)
+.+++..+|.+++.++-+
T Consensus 82 -~~~~~~~~I~aIs~s~Q~ 99 (556)
T PLN02669 82 -KEKFPFHKVVAISGSGQQ 99 (556)
T ss_pred -HcCCChhhEEEEEecCCc
Confidence 236665679999988644
No 163
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=42.20 E-value=90 Score=33.37 Aligned_cols=78 Identities=12% Similarity=0.192 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHH----HhhhhccCCCCCCce
Q 008139 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV----YMGVLQFLPVFDRLV 145 (576)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~e-EA~l~----~~gv~~~l~~~~~~~ 145 (576)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ +.|+++.+.++.+ +..+. ........ +.-
T Consensus 16 ~l~~l~~~l~~~g~~--r~lvvt~~~~~~~g~~~~v~~~L~-~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~----~~D 88 (379)
T TIGR02638 16 AIEDIVDEVKRRGFK--KALVVTDKDLIKFGVADKVTDLLD-EAGIAYELFDEVKPNPTITVVKAGVAAFKAS----GAD 88 (379)
T ss_pred HHHHHHHHHHhcCCC--EEEEEcCcchhhccchHHHHHHHH-HCCCeEEEECCCCCCcCHHHHHHHHHHHHhc----CCC
Confidence 344455556667764 677777676776555566666654 5689999987643 22111 11111111 113
Q ss_pred EEEEeCCCce
Q 008139 146 LSVDIGGGST 155 (576)
Q Consensus 146 lviDIGGGSt 155 (576)
.|+=|||||+
T Consensus 89 ~IiaiGGGSv 98 (379)
T TIGR02638 89 YLIAIGGGSP 98 (379)
T ss_pred EEEEeCChHH
Confidence 8999999996
No 164
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=41.73 E-value=1e+02 Score=32.65 Aligned_cols=78 Identities=14% Similarity=0.232 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHH----HhhhhccCCCCCCce
Q 008139 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV----YMGVLQFLPVFDRLV 145 (576)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~e-EA~l~----~~gv~~~l~~~~~~~ 145 (576)
++++..+.+++++.. ++.+|....+.+..-.+.+.+.++ +.|+++.+.++-+ +..+. ........ +.-
T Consensus 10 ~l~~l~~~l~~~~~~--~~lvv~~~~~~~~~~~~~v~~~L~-~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~----~~d 82 (370)
T cd08551 10 AIEKLGEEIKNLGGR--KALIVTDPGLVKTGVLDKVIDSLK-EAGIEVVIFDGVEPNPTLSNVDAAVAAYREE----GCD 82 (370)
T ss_pred HHHHHHHHHHHcCCC--eEEEEeCcchhhCccHHHHHHHHH-HcCCeEEEECCCCCCCCHHHHHHHHHHHHhc----CCC
Confidence 344555556667764 667776666655333455666655 3588888877532 22222 11111111 113
Q ss_pred EEEEeCCCce
Q 008139 146 LSVDIGGGST 155 (576)
Q Consensus 146 lviDIGGGSt 155 (576)
.|+-|||||+
T Consensus 83 ~IiaiGGGs~ 92 (370)
T cd08551 83 GVIAVGGGSV 92 (370)
T ss_pred EEEEeCCchH
Confidence 8999999995
No 165
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=41.25 E-value=1.6e+02 Score=30.25 Aligned_cols=57 Identities=18% Similarity=0.063 Sum_probs=38.5
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeee-eeeeeccCCCcCCCCCHHHHHHHHHHHHH
Q 008139 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLK-QPVILGRDLSSSCSISTQSQARSVESLLM 74 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k-~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~ 74 (576)
..++|||+.|+-+..++ ++.+..-.+.. =.+||-+....++..+++.++.+.+.+++
T Consensus 127 ~~v~DiGGGSte~~~~~---~~~~~~~~Sl~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~ 184 (300)
T TIGR03706 127 GLVVDIGGGSTELILGK---DFEPGEGVSLPLGCVRLTEQFFPDGPISKKSLKQARKAARE 184 (300)
T ss_pred cEEEEecCCeEEEEEec---CCCEeEEEEEccceEEhHHhhCCCCCCCHHHHHHHHHHHHH
Confidence 48999999999999874 34332222222 24688887777777887777766666544
No 166
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=37.94 E-value=47 Score=35.43 Aligned_cols=80 Identities=19% Similarity=0.244 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHHH--hhhhccCCCCCCceEE
Q 008139 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFVY--MGVLQFLPVFDRLVLS 147 (576)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~e-EA~l~~--~gv~~~l~~~~~~~lv 147 (576)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ ..|+++.+.++-+ +..+.- .++..... . +.-.|
T Consensus 13 ~l~~l~~~l~~~g~~--~~lvvt~~~~~~~g~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~-~~d~I 87 (374)
T cd08189 13 SLAQLPAAISQLGVK--KVLIVTDKGLVKLGLLDKVLEALE-GAGIEYAVYDGVPPDPTIENVEAGLALYRE-N-GCDAI 87 (374)
T ss_pred HHHHHHHHHHhcCCC--eEEEEeCcchhhcccHHHHHHHHH-hcCCeEEEeCCCCCCcCHHHHHHHHHHHHh-c-CCCEE
Confidence 455555666677764 677787776765322355555444 4588888887642 222211 11111111 1 11389
Q ss_pred EEeCCCce
Q 008139 148 VDIGGGST 155 (576)
Q Consensus 148 iDIGGGSt 155 (576)
+=|||||+
T Consensus 88 IaiGGGS~ 95 (374)
T cd08189 88 LAVGGGSV 95 (374)
T ss_pred EEeCCccH
Confidence 99999995
No 167
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=37.24 E-value=37 Score=35.54 Aligned_cols=139 Identities=19% Similarity=0.208 Sum_probs=75.4
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEeehh
Q 008139 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAA 96 (576)
Q Consensus 17 vIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA 96 (576)
.+|||-=.++ ++.++++|....+.. .+.-|=++. +++-++|+.+.+ .++.. ..+-++=|.-
T Consensus 2 G~DiGGA~~K--~a~~~~~g~~~~v~~--~~~plW~~~-----------~~L~~~l~~~~~---~~~~~-~~~avtMTgE 62 (318)
T TIGR03123 2 GIDIGGANTK--AAELDEDGRIKEVHQ--LYCPLWKGN-----------DKLAETLKEISQ---DLSSA-DNVAVTMTGE 62 (318)
T ss_pred ccccccceee--eEEecCCCceeEEEE--ecCcccCCc-----------hHHHHHHHHHHH---hcCcc-ceEEEEeehh
Confidence 3799954444 445555565444432 333444443 222234444443 23332 3455566777
Q ss_pred hhhc-CC----hHHHHHHHHHHcCCcEEEeCh------HHHHH-H----HHhhhh---ccCCCCCCceEEEEeCCCceeE
Q 008139 97 VRAA-EN----KDEFVECVREKVGFEVDVLTG------EQEAK-F----VYMGVL---QFLPVFDRLVLSVDIGGGSTEF 157 (576)
Q Consensus 97 vR~A-~N----~~~fl~~i~~~tG~~i~vIsg------~eEA~-l----~~~gv~---~~l~~~~~~~lviDIGGGStEl 157 (576)
+-++ .+ -..+++.+.+..+-++.+..+ .++|. . ...|.. ..+....++.+++||||=||.+
T Consensus 63 LaD~f~~r~~GV~~i~~~~~~~~~~~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~la~~~~~~I~~DmGGTTtDi 142 (318)
T TIGR03123 63 LADCFEDKAEGVEFILAAVESAFGSPVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLIAKRIPECLFVDMGSTTTDI 142 (318)
T ss_pred hhhhhcCHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHHHhcCCCEEEEEcCccceee
Confidence 7654 12 234466777777667766321 23332 2 111211 1111113458999999999999
Q ss_pred EEeeCCeEeeEEeechh
Q 008139 158 VIGKRGKVVFCESVNLG 174 (576)
Q Consensus 158 ~~~~~~~~~~~~SlplG 174 (576)
+.+.+|++.......++
T Consensus 143 ~~i~~G~p~~~~~~d~~ 159 (318)
T TIGR03123 143 IPIIDGEVAAKGKTDLE 159 (318)
T ss_pred EEecCCEeeeeechhhh
Confidence 99999998876555555
No 168
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=36.44 E-value=51 Score=35.20 Aligned_cols=80 Identities=14% Similarity=0.237 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHHH--hhhhccCCCCCCceEE
Q 008139 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFVY--MGVLQFLPVFDRLVLS 147 (576)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~e-EA~l~~--~gv~~~l~~~~~~~lv 147 (576)
++++..+.++.+|.. ++.+|....+.+..=.+.+.+.++ ..|+++.+.++-+ |..+.- .++..... . +.-+|
T Consensus 15 ~l~~l~~~l~~~g~~--~~lvv~~~~~~~~~~~~~v~~~L~-~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~-~-~~D~I 89 (377)
T cd08176 15 AIKEIGDELKNLGFK--KALIVTDKGLVKIGVVEKVTDVLD-EAGIDYVIYDGVKPNPTITNVKDGLAVFKK-E-GCDFI 89 (377)
T ss_pred HHHHHHHHHHHhCCC--eEEEECCchHhhcCcHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHHHHh-c-CCCEE
Confidence 344455556666763 566676666655333444555554 4589999998732 222211 11111111 1 12389
Q ss_pred EEeCCCce
Q 008139 148 VDIGGGST 155 (576)
Q Consensus 148 iDIGGGSt 155 (576)
+=|||||+
T Consensus 90 IavGGGS~ 97 (377)
T cd08176 90 ISIGGGSP 97 (377)
T ss_pred EEeCCcHH
Confidence 99999996
No 169
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=36.25 E-value=58 Score=35.67 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=15.9
Q ss_pred EEEecccceEEEEEEEe
Q 008139 17 SIDMGTSSFKLLIIRAY 33 (576)
Q Consensus 17 vIDIGSNsirL~I~e~~ 33 (576)
+||+||.|+|..+++.+
T Consensus 2 aiD~Gtt~~k~~l~~~~ 18 (454)
T TIGR02627 2 AVDLGASSGRVMLASYE 18 (454)
T ss_pred cEeccCCchheEEEEEc
Confidence 79999999999999976
No 170
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=36.02 E-value=80 Score=34.69 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=17.2
Q ss_pred ceEEEEeCCCceeEEEeeCCeE
Q 008139 144 LVLSVDIGGGSTEFVIGKRGKV 165 (576)
Q Consensus 144 ~~lviDIGGGStEl~~~~~~~~ 165 (576)
+.+++||||.+|-+-..-+|.+
T Consensus 250 ~ll~VDIGGATTDvhSv~~g~~ 271 (463)
T TIGR01319 250 DFILIDIGGATTDVHSAAAGEL 271 (463)
T ss_pred CEEEEEcCccccchhhccCCCc
Confidence 4799999999998876655543
No 171
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=35.78 E-value=42 Score=35.00 Aligned_cols=78 Identities=14% Similarity=0.250 Sum_probs=41.0
Q ss_pred HHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHH-HHHHHh-hhhccCCCCCCceEEEE
Q 008139 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKFVYM-GVLQFLPVFDRLVLSVD 149 (576)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~eE-A~l~~~-gv~~~l~~~~~~~lviD 149 (576)
+.+..+.++.++.. ++.+|....+++ .=.+.+.+.+++. +++.+.++.+. ..+.-. .+...+.. .+.-.|+=
T Consensus 11 l~~l~~~~~~~g~~--~~liv~~~~~~~-~~~~~v~~~l~~~--~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~IIa 84 (332)
T cd07766 11 IEKIGEEIKRGGFD--RALVVSDEGVVK-GVGEKVADSLKKL--IAVHIFDGVGPNPTFEEVKEAVERARA-AEVDAVIA 84 (332)
T ss_pred HHHHHHHHHhcCCC--eEEEEeCCchhh-hHHHHHHHHHHhc--CcEEEeCCcCCCcCHHHHHHHHHHHHh-cCcCEEEE
Confidence 34444455566763 677787777766 3344455555443 67777764432 222111 11111111 12248999
Q ss_pred eCCCce
Q 008139 150 IGGGST 155 (576)
Q Consensus 150 IGGGSt 155 (576)
|||||+
T Consensus 85 iGGGs~ 90 (332)
T cd07766 85 VGGGST 90 (332)
T ss_pred eCCchH
Confidence 999996
No 172
>PRK10854 exopolyphosphatase; Provisional
Probab=35.25 E-value=1.7e+02 Score=32.81 Aligned_cols=57 Identities=19% Similarity=0.119 Sum_probs=39.8
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeee-eeeeeccCCCcCCCCCHHHHHHHHHHHH
Q 008139 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLK-QPVILGRDLSSSCSISTQSQARSVESLL 73 (576)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k-~~vrLg~~~~~~g~Ls~e~i~r~~~~L~ 73 (576)
..-+||||+.|+-+.+++ ++.+....+.. -.|||-+..+.++..+++.++++...+.
T Consensus 138 ~~lvvDIGGGStEl~~~~---~~~~~~~~S~~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~ 195 (513)
T PRK10854 138 RKLVIDIGGGSTELVIGE---NFEPILVESRRMGCVSFAQLYFPGGVISKENFQRARLAAA 195 (513)
T ss_pred CeEEEEeCCCeEEEEEec---CCCeeEeEEEecceeeHHhhhCCCCCCCHHHHHHHHHHHH
Confidence 468999999999999985 34444444443 2468888777777788777666555544
No 173
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=34.05 E-value=1.1e+02 Score=27.25 Aligned_cols=61 Identities=15% Similarity=0.304 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHH
Q 008139 60 ISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKF 129 (576)
Q Consensus 60 Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~eEA~l 129 (576)
.+.+.|..+ +.+.++++++++..|.++||-.++. |-..++ .+-++.|++++..|.+|=...
T Consensus 14 ~~~e~i~~a------i~~~L~~~~l~~~si~~lasi~~K~--~E~~L~-~~A~~lg~pl~~~~~~eL~~~ 74 (126)
T PRK07027 14 VPAEQIEAA------IRAALAQRPLASADVRVVATLDLKA--DEAGLL-ALCARHGWPLRAFSAAQLAAS 74 (126)
T ss_pred CCHHHHHHH------HHHHHHHcCCCHHHhheeEehhhhc--CCHHHH-HHHHHhCCCeEEeCHHHHHhc
Confidence 466665443 3466777888888899999998764 333444 445567999999998886553
No 174
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=33.93 E-value=18 Score=41.63 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=19.3
Q ss_pred HHHHHHhhcccccCC--------CCchhhhHHHHHc
Q 008139 403 EAACLLHNIGHFTSK--------KGYHKQSCHIIMN 430 (576)
Q Consensus 403 ~~AalLHdIG~~I~~--------~~h~~Hs~yiI~n 430 (576)
-.||+|||||+++-- ..|+++++..+..
T Consensus 2 ~~~aLLHDIGK~~~Ra~~~~~~~~~h~~~g~~~~~~ 37 (648)
T TIGR02578 2 AVAALLHDIGKVIRRAGDCYNEDLKHDKTGYEFIHE 37 (648)
T ss_pred chhhhhhccchhhhhcccCcccccchhhhhHHHHHH
Confidence 468999999999973 3455555555533
No 175
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=32.84 E-value=1.5e+02 Score=31.75 Aligned_cols=78 Identities=17% Similarity=0.225 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHH---HHHHHHhhh--hccCCCCCCce
Q 008139 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ---EAKFVYMGV--LQFLPVFDRLV 145 (576)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~e---EA~l~~~gv--~~~l~~~~~~~ 145 (576)
+++...+.+..+|+. ++.+|.+..+.++.=-+.+++.++.+ |+++.|-++-+ .-.-...|+ ..... . =
T Consensus 16 ~l~~l~~~~~~~g~~--r~liVTd~~~~~~g~~~~v~~~L~~~-~i~~~if~~v~p~P~~~~v~~~~~~~~~~~---~-D 88 (377)
T COG1454 16 SLKELGEEVKRLGAK--RALIVTDRGLAKLGLLDKVLDSLDAA-GIEYEVFDEVEPEPTIETVEAGAEVAREFG---P-D 88 (377)
T ss_pred hHHHHHHHHHhcCCC--ceEEEECCccccchhHHHHHHHHHhc-CCeEEEecCCCCCCCHHHHHHHHHHHHhcC---C-C
Confidence 566677777788885 78889999998888778888887764 68887766421 111111122 22221 1 2
Q ss_pred EEEEeCCCce
Q 008139 146 LSVDIGGGST 155 (576)
Q Consensus 146 lviDIGGGSt 155 (576)
.||=+||||.
T Consensus 89 ~iIalGGGS~ 98 (377)
T COG1454 89 TIIALGGGSV 98 (377)
T ss_pred EEEEeCCccH
Confidence 8999999995
No 176
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=32.54 E-value=50 Score=35.75 Aligned_cols=41 Identities=29% Similarity=0.331 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccc
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF 414 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~ 414 (576)
.|+--|+.+|..|=.+|.-... .....|++.||+.||||.-
T Consensus 71 THSLEVAQIgRsia~~l~~~~~-------------~~~~dL~E~a~LaHDiGhP 111 (412)
T COG0232 71 THSLEVAQIGRSIARELGLDLD-------------LPFEDLVETACLAHDIGHP 111 (412)
T ss_pred hhhHHHHHHHHHHHHHhccccC-------------CChHHHHHHHHHHhcCCCC
Confidence 6777777777765444432100 1123799999999999964
No 177
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=32.12 E-value=62 Score=34.52 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeCh-HHHHHHH--HhhhhccCCCCCCceEE
Q 008139 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTG-EQEAKFV--YMGVLQFLPVFDRLVLS 147 (576)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg-~eEA~l~--~~gv~~~l~~~~~~~lv 147 (576)
++++..+.+++++.. ++.+|....+++..-.+.+.+.++ +.|+++.+.++ +.|..+. ..++...-. .+. -.|
T Consensus 10 ~~~~l~~~~~~~~~~--r~livt~~~~~~~g~~~~v~~~L~-~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~-D~I 84 (375)
T cd08194 10 AVDETGAVLADLGGK--RPLIVTDKVMVKLGLVDKLTDSLK-KEGIESAIFDDVVSEPTDESVEEGVKLAKE-GGC-DVI 84 (375)
T ss_pred HHHHHHHHHHHcCCC--eEEEEcCcchhhcchHHHHHHHHH-HCCCeEEEECCCCCCcCHHHHHHHHHHHHh-cCC-CEE
Confidence 455555666666663 667777666664322344444443 45888888865 2232222 111111111 111 389
Q ss_pred EEeCCCce
Q 008139 148 VDIGGGST 155 (576)
Q Consensus 148 iDIGGGSt 155 (576)
+=|||||+
T Consensus 85 IaiGGGS~ 92 (375)
T cd08194 85 IALGGGSP 92 (375)
T ss_pred EEeCCchH
Confidence 99999995
No 178
>PF10298 WhiA_N: WhiA N-terminal LAGLIDADG-like domain; InterPro: IPR018478 This entry represents the N-terminal domain of sporulation factor WhiA []. This domain is related to the LAGLIDADG homing endonuclease domain while the C-terminal domain of WhiA is predicted to be a DNA binding helix-turn-helix domain [].; PDB: 3HYI_A 3HYJ_D.
Probab=30.72 E-value=2.1e+02 Score=23.49 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcceEEEEeCceeEEEEeeCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCceEEE
Q 008139 474 KFRVLCAIVRLSVILQQNDCVNLRGVDFFHSYEGFKLVIKEARDQPYLPGSSQPTLDNIEAELEKELEHFKKIFKQELLV 553 (576)
Q Consensus 474 ~v~kL~~iLRlA~~Ld~s~~~~i~~i~~~~~~~~~~L~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~f~~~fg~~l~i 553 (576)
+.+.|++++|++-.|..+ .+.+.|.+..+ + ..-+.+-..++++.|+.+..+
T Consensus 4 ~~AELaAlir~~G~l~~~-------------~~~~~l~~~te----------n------~~vARri~~llk~~f~i~~ei 54 (86)
T PF10298_consen 4 RIAELAALIRFSGSLSIS-------------NGRISLEISTE----------N------AAVARRIYSLLKKLFDIDPEI 54 (86)
T ss_dssp HHHHHHHHHHHHEEECTT-------------TTEEEE--EES-----------------HHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHHhCCEEEEE-------------CCEEEEEEEeC----------C------HHHHHHHHHHHHHHhCCCeEE
Confidence 456799999999877654 23345555543 1 356788889999999999999
Q ss_pred EeecCCCcccc
Q 008139 554 VGSSSSSNDRK 564 (576)
Q Consensus 554 ~~~~~~~~~~~ 564 (576)
.+.+.......
T Consensus 55 ~v~~~~~l~k~ 65 (86)
T PF10298_consen 55 SVRRSRNLKKN 65 (86)
T ss_dssp EEEE-SSSBEE
T ss_pred EEecCCCCCCC
Confidence 99877654443
No 179
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=29.12 E-value=1.8e+02 Score=30.70 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHH-HHHH-Hhh---hhccCCCCCCceEEE
Q 008139 74 MFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKFV-YMG---VLQFLPVFDRLVLSV 148 (576)
Q Consensus 74 ~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~eE-A~l~-~~g---v~~~l~~~~~~~lvi 148 (576)
++.+.++.++.. ++.+|..+.+.+ .=.+.+.+.++...++++.++++-|+ ..+. ... ....... ++.-+|+
T Consensus 13 ~l~~~~~~~~~~--k~livtd~~v~~-~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~-~r~d~II 88 (344)
T cd08169 13 SVESYTTRDLFD--QYFFISDSGVAD-LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGA-NRRTAIV 88 (344)
T ss_pred HHHHHHHhcCCC--eEEEEECccHHH-HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCC-CCCcEEE
Confidence 333445555653 567777776655 22233333333224777778875333 2221 111 1221111 1235899
Q ss_pred EeCCCcee
Q 008139 149 DIGGGSTE 156 (576)
Q Consensus 149 DIGGGStE 156 (576)
=|||||+-
T Consensus 89 aiGGGsv~ 96 (344)
T cd08169 89 AVGGGATG 96 (344)
T ss_pred EECCcHHH
Confidence 99999863
No 180
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=27.39 E-value=65 Score=33.12 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=21.3
Q ss_pred chHHHHHHHHHHhhcccccCCCCchh
Q 008139 397 KDLEYLEAACLLHNIGHFTSKKGYHK 422 (576)
Q Consensus 397 ~~r~LL~~AalLHdIG~~I~~~~h~~ 422 (576)
-.+.++.++++|||+|+-.-+..--.
T Consensus 163 ~n~dli~Ag~ilHdigK~~el~~~~~ 188 (287)
T COG3481 163 VNRELIYAGAILHDIGKVLELTGPEA 188 (287)
T ss_pred ccHHHHHHHHHHhcccccccCCCccc
Confidence 34689999999999999887766554
No 181
>PRK13321 pantothenate kinase; Reviewed
Probab=26.97 E-value=93 Score=31.28 Aligned_cols=28 Identities=11% Similarity=0.218 Sum_probs=23.4
Q ss_pred eEEEEeCCCceeEEEeeCCeEeeEEeec
Q 008139 145 VLSVDIGGGSTEFVIGKRGKVVFCESVN 172 (576)
Q Consensus 145 ~lviDIGGGStEl~~~~~~~~~~~~Slp 172 (576)
.+.+||||-++-+.+++++++...+.+|
T Consensus 2 iL~IDIGnT~ik~gl~~~~~i~~~~~~~ 29 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGDRLLRSFRLP 29 (256)
T ss_pred EEEEEECCCeEEEEEEECCEEEEEEEEe
Confidence 4789999999999999987877666664
No 182
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=26.87 E-value=93 Score=33.17 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHH-HHHH--HhhhhccCCCCCCceEE
Q 008139 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKFV--YMGVLQFLPVFDRLVLS 147 (576)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~eE-A~l~--~~gv~~~l~~~~~~~lv 147 (576)
++++..+.++.++.. ++.+|....+++..=.+.+.+.++ +.|+++.+.++-+. ..+. -.++..... . +.-.|
T Consensus 13 ~l~~l~~~l~~~~~~--~~livt~~~~~~~~~~~~v~~~L~-~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~-~-~~D~I 87 (376)
T cd08193 13 SLARLGELLAALGAK--RVLVVTDPGILKAGLIDPLLASLE-AAGIEVTVFDDVEADPPEAVVEAAVEAARA-A-GADGV 87 (376)
T ss_pred HHHHHHHHHHHcCCC--eEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEECCCCCCcCHHHHHHHHHHHHh-c-CCCEE
Confidence 345555566666764 567676666665433455555443 45888887764321 1111 111111111 1 12389
Q ss_pred EEeCCCce
Q 008139 148 VDIGGGST 155 (576)
Q Consensus 148 iDIGGGSt 155 (576)
+=|||||+
T Consensus 88 IaiGGGs~ 95 (376)
T cd08193 88 IGFGGGSS 95 (376)
T ss_pred EEeCCchH
Confidence 99999995
No 183
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=26.83 E-value=2.1e+02 Score=30.46 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=38.0
Q ss_pred HHHHHHHHCCCCcccEEEEeehhh-hhcCChHHHHHHHHHHcCCcEEEeChHH-----HHHHHHhhhhccCCCCCCceEE
Q 008139 74 MFRDIIQSHNISRDHTRAVATAAV-RAAENKDEFVECVREKVGFEVDVLTGEQ-----EAKFVYMGVLQFLPVFDRLVLS 147 (576)
Q Consensus 74 ~f~~~~~~~~v~~~~i~~vATsAv-R~A~N~~~fl~~i~~~tG~~i~vIsg~e-----EA~l~~~gv~~~l~~~~~~~lv 147 (576)
+..+.++.+| + ++.+|..... +...=.+.+.+.++ +.|+++.+.++-+ |.-.......... +.-.|
T Consensus 16 ~l~~~~~~~g-~--r~livt~~~~~~~~g~~~~v~~~L~-~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~----~~D~I 87 (380)
T cd08185 16 ELGEEALKPG-K--KALIVTGNGSSKKTGYLDRVIELLK-QAGVEVVVFDKVEPNPTTTTVMEGAALAREE----GCDFV 87 (380)
T ss_pred HHHHHHHhcC-C--eEEEEeCCCchhhccHHHHHHHHHH-HcCCeEEEeCCccCCCCHHHHHHHHHHHHHc----CCCEE
Confidence 3334445556 3 5666665443 44332344444444 3588898887643 2111111111211 12389
Q ss_pred EEeCCCce
Q 008139 148 VDIGGGST 155 (576)
Q Consensus 148 iDIGGGSt 155 (576)
+=|||||+
T Consensus 88 iavGGGS~ 95 (380)
T cd08185 88 VGLGGGSS 95 (380)
T ss_pred EEeCCccH
Confidence 99999995
No 184
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=26.31 E-value=94 Score=26.98 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCC---cEEEeChHH-----HHHHHHhhhhccCCCCCCceEEEEeCCCce
Q 008139 105 EFVECVREKVGF---EVDVLTGEQ-----EAKFVYMGVLQFLPVFDRLVLSVDIGGGST 155 (576)
Q Consensus 105 ~fl~~i~~~tG~---~i~vIsg~e-----EA~l~~~gv~~~l~~~~~~~lviDIGGGSt 155 (576)
.+.+.++.-+|- +++.++... +-.-.+..+...++..++-.++.|++|||.
T Consensus 13 g~~~~~~~i~G~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 13 GLLESAEMILGEDQDNIEAVDLYPDESIEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp HHHHHHHHHHTSTCSSEEEEEETTTSCHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred HHHHHHHHHcCCCcccEEEEECcCCCCHHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 455555555565 455554332 222222233344443344467899999984
No 185
>PRK12408 glucokinase; Provisional
Probab=25.86 E-value=2.6e+02 Score=29.32 Aligned_cols=102 Identities=16% Similarity=0.220 Sum_probs=55.4
Q ss_pred ccCCCc-eEEEEEecccceEEEEEEEeCCCCE----EEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHC
Q 008139 8 MQIPQT-LFASIDMGTSSFKLLIIRAYPNGKF----LTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSH 82 (576)
Q Consensus 8 ~~~~~~-~~AvIDIGSNsirL~I~e~~~~~~~----~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~ 82 (576)
+.|.+. .+-+||||...+|+-+++.+ +.. .++...+.++. ..+.+ .+++++|.+. ..
T Consensus 10 ~~~~~~~~~L~~DIGGT~i~~al~d~~--g~~~~~~~~~~~~~~~t~-----------~~~~~---~~~i~~~~~~--~~ 71 (336)
T PRK12408 10 VAVPRPESFVAADVGGTHVRVALVCAS--PDAAKPVELLDYRTYRCA-----------DYPSL---AAILADFLAE--CA 71 (336)
T ss_pred ccCcccccEEEEEcChhhhheeEEecc--CCccccccccceeEecCC-----------CccCH---HHHHHHHHhc--CC
Confidence 455544 47899999999999999643 321 22333322222 11123 3334454321 11
Q ss_pred CCCcccEEEEeehhh-h-h----cCCh--HHHHHHHHHHcCCc-EEEeChHHHHHHH
Q 008139 83 NISRDHTRAVATAAV-R-A----AENK--DEFVECVREKVGFE-VDVLTGEQEAKFV 130 (576)
Q Consensus 83 ~v~~~~i~~vATsAv-R-~----A~N~--~~fl~~i~~~tG~~-i~vIsg~eEA~l~ 130 (576)
.+ .-.++|.... . + +.|- ..+-+.+++++|++ |.+++.-+=+-|.
T Consensus 72 ~~---~~igIg~pG~~~~~g~v~~~nl~w~~~~~~l~~~~~~~~V~l~ND~naaa~g 125 (336)
T PRK12408 72 PV---RRGVIASAGYALDDGRVITANLPWTLSPEQIRAQLGLQAVHLVNDFEAVAYA 125 (336)
T ss_pred Cc---CEEEEEecCCceECCEEEecCCCCccCHHHHHHHcCCCeEEEeecHHHHHcc
Confidence 12 2244554443 1 1 2232 22457788899995 9999987766655
No 186
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=25.62 E-value=1e+02 Score=32.63 Aligned_cols=76 Identities=13% Similarity=0.222 Sum_probs=41.1
Q ss_pred HHHHHHHHCCCCcccEEEEeehhh-hhcCChHHHHHHHHHHcCCcEEEeChH-HHHHHHHh--hhhccCCCCCCceEEEE
Q 008139 74 MFRDIIQSHNISRDHTRAVATAAV-RAAENKDEFVECVREKVGFEVDVLTGE-QEAKFVYM--GVLQFLPVFDRLVLSVD 149 (576)
Q Consensus 74 ~f~~~~~~~~v~~~~i~~vATsAv-R~A~N~~~fl~~i~~~tG~~i~vIsg~-eEA~l~~~--gv~~~l~~~~~~~lviD 149 (576)
+..+.++.+| . ++.+|....+ +.+.-.+.+.+.++ ..|+++.+.++- .+..+.-. ++..... .+.-+|+=
T Consensus 16 ~l~~~~~~~g-~--r~lvVt~~~~~~~~g~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa 89 (357)
T cd08181 16 KHGEELAALG-K--RALIVTGKSSAKKNGSLDDVTKALE-ELGIEYEIFDEVEENPSLETIMEAVEIAKK--FNADFVIG 89 (357)
T ss_pred HHHHHHHHcC-C--EEEEEeCCchHhhcCcHHHHHHHHH-HcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEE
Confidence 3334455566 3 5676766554 54544466666654 458888888753 22222211 1111111 11239999
Q ss_pred eCCCce
Q 008139 150 IGGGST 155 (576)
Q Consensus 150 IGGGSt 155 (576)
|||||+
T Consensus 90 vGGGSv 95 (357)
T cd08181 90 IGGGSP 95 (357)
T ss_pred eCCchH
Confidence 999995
No 187
>COG4680 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.61 E-value=57 Score=27.47 Aligned_cols=19 Identities=26% Similarity=0.602 Sum_probs=15.7
Q ss_pred EEEEEecccceEEEEEEEe
Q 008139 15 FASIDMGTSSFKLLIIRAY 33 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~ 33 (576)
.-|+|||.|+.||++.=..
T Consensus 56 r~Vfdi~GN~yRLIvhv~y 74 (98)
T COG4680 56 RVVFDIGGNKYRLIVHVAY 74 (98)
T ss_pred eEEEEcCCCEEEEEEEEEe
Confidence 4699999999999987433
No 188
>PRK00292 glk glucokinase; Provisional
Probab=25.46 E-value=5e+02 Score=26.69 Aligned_cols=119 Identities=11% Similarity=0.111 Sum_probs=62.6
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEe
Q 008139 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (576)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (576)
.+-+||||..++|+.+++.. ++. ++.+.+.++. . .+...+++..|.+. ..+... .-.++|
T Consensus 3 ~~lgiDIGgT~i~~~l~~~~-~~~--~~~~~~~~~~---~-----------~~~~~~~l~~~l~~--~~~~~~-~gigIg 62 (316)
T PRK00292 3 PALVGDIGGTNARFALCDWA-NGE--IEQIKTYATA---D-----------YPSLEDAIRAYLAD--EHGVQV-RSACFA 62 (316)
T ss_pred eEEEEEcCccceEEEEEecC-CCc--eeeeEEEecC---C-----------CCCHHHHHHHHHHh--ccCCCC-ceEEEE
Confidence 46899999999999999753 332 2433333322 1 11133444444332 112111 123444
Q ss_pred ehhhhh-----cCCh--HHHHHHHHHHcCCc-EEEeChHHHHHHHHh----------hhhccCCCCCCceEEEEeCCCc
Q 008139 94 TAAVRA-----AENK--DEFVECVREKVGFE-VDVLTGEQEAKFVYM----------GVLQFLPVFDRLVLSVDIGGGS 154 (576)
Q Consensus 94 TsAvR~-----A~N~--~~fl~~i~~~tG~~-i~vIsg~eEA~l~~~----------gv~~~l~~~~~~~lviDIGGGS 154 (576)
....=+ ..|- ....+.+++++|++ |.+.+.-+=+-|.-. |..... ..++.+++-+|.|=
T Consensus 63 ~pG~vd~~~i~~~n~~w~~~~~~l~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~--~~~~~~~v~~GTGi 139 (316)
T PRK00292 63 IAGPVDGDEVRMTNHHWAFSIAAMKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPV--PGAPIAVIGPGTGL 139 (316)
T ss_pred EeCcccCCEEEecCCCcccCHHHHHHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCC--CCCcEEEEEcCCcc
Confidence 433211 1121 11247788899996 999998777666532 211110 12457788777663
No 189
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=25.21 E-value=2.3e+02 Score=31.55 Aligned_cols=78 Identities=18% Similarity=0.135 Sum_probs=54.0
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeee-eeeeeccCCCcCCCCCHHHHHHHHHHHHHH-HHHHHHC---CCCcc
Q 008139 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLK-QPVILGRDLSSSCSISTQSQARSVESLLMF-RDIIQSH---NISRD 87 (576)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k-~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f-~~~~~~~---~v~~~ 87 (576)
....+||||--|.-|++.+.. .+....+.. -.|||-+..+.++.++++.++.+.+.++.. .++...+ +..
T Consensus 129 ~~~lv~DIGGGStEl~~g~~~---~~~~~~Sl~~G~v~lt~~~~~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~-- 203 (492)
T COG0248 129 GDGLVIDIGGGSTELVLGDNF---EIGLLISLPLGCVRLTERFFPDDPISEENFAKARDAVREELEEIAKEYRIAGWA-- 203 (492)
T ss_pred CCEEEEEecCCeEEEEEecCC---ccceeEEeecceEEeehhhcCCCCCCHHHHHHHHHHHHHHHHhhhHHHHhhhhc--
Confidence 457899999999999998632 233333333 347888888888999999999999887753 4444443 221
Q ss_pred cEEEEeehhh
Q 008139 88 HTRAVATAAV 97 (576)
Q Consensus 88 ~i~~vATsAv 97 (576)
.+|||+.-
T Consensus 204 --~~vg~sGT 211 (492)
T COG0248 204 --GLVGTSGT 211 (492)
T ss_pred --cEEEccHH
Confidence 26887754
No 190
>PF11762 Arabinose_Iso_C: L-arabinose isomerase C-terminal domain; InterPro: IPR024664 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source []. This entry represents a C-terminal non-catalytic domain in L-arabinose isomerase.; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=24.80 E-value=95 Score=27.32 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=16.0
Q ss_pred eEEEEEecccceEEEEEEEe
Q 008139 14 LFASIDMGTSSFKLLIIRAY 33 (576)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~ 33 (576)
..+.+|+| |-+||++.+++
T Consensus 32 ~~slvD~G-~rFRLi~n~v~ 50 (115)
T PF11762_consen 32 VVSLVDMG-DRFRLIVNEVD 50 (115)
T ss_dssp EEEEEE-S-SSEEEEEEEEE
T ss_pred EEEEeecC-CcEEEEEEEEE
Confidence 46899999 99999999987
No 191
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=24.74 E-value=2.7e+02 Score=29.73 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=39.8
Q ss_pred HHHHHHHHHC---CCCcccEEEEeehhhhh-cCChHHHHHHHHHHcCCcEEEeChHH-HHH----HHHhhhhccCCCCCC
Q 008139 73 LMFRDIIQSH---NISRDHTRAVATAAVRA-AENKDEFVECVREKVGFEVDVLTGEQ-EAK----FVYMGVLQFLPVFDR 143 (576)
Q Consensus 73 ~~f~~~~~~~---~v~~~~i~~vATsAvR~-A~N~~~fl~~i~~~tG~~i~vIsg~e-EA~----l~~~gv~~~l~~~~~ 143 (576)
++..+.++.+ |.. ++.+|....+.+ ..--+.+.+.++ +.|+++.+.++-+ +.. -.......... .
T Consensus 12 ~~l~~~l~~~~~~g~k--r~livtd~~~~~~~g~~~~v~~~L~-~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~---~ 85 (383)
T cd08186 12 EKIGEILKDLKSKGIS--KVLLVTGKSAYKKSGAWDKVEPALD-EHGIEYVLYNKVTPNPTVDQVDEAAKLGREFG---A 85 (383)
T ss_pred HHHHHHHHHhcccCCC--EEEEEcCccHHhhcChHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcC---C
Confidence 3444444444 553 566676554433 322355665555 4699999887543 111 11111112221 1
Q ss_pred ceEEEEeCCCce
Q 008139 144 LVLSVDIGGGST 155 (576)
Q Consensus 144 ~~lviDIGGGSt 155 (576)
-+|+=|||||+
T Consensus 86 -D~IIaiGGGS~ 96 (383)
T cd08186 86 -QAVIAIGGGSP 96 (383)
T ss_pred -CEEEEeCCccH
Confidence 38999999995
No 192
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=24.71 E-value=1.2e+02 Score=32.80 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=17.2
Q ss_pred ceEEEEEecccceEEEEEE
Q 008139 13 TLFASIDMGTSSFKLLIIR 31 (576)
Q Consensus 13 ~~~AvIDIGSNsirL~I~e 31 (576)
++++.||+||.+.+.+|++
T Consensus 2 ~y~lGIDIGSTsTKaVVmd 20 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMD 20 (432)
T ss_pred ceEEEEEcCchhEEEEEEc
Confidence 3689999999999999996
No 193
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=24.66 E-value=71 Score=29.84 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhcccccCCCCchh
Q 008139 400 EYLEAACLLHNIGHFTSKKGYHK 422 (576)
Q Consensus 400 ~LL~~AalLHdIG~~I~~~~h~~ 422 (576)
.+|..+|++||.|+.+.+.+-.+
T Consensus 116 dWlHLtaLiHDLGKvl~f~GepQ 138 (204)
T KOG1573|consen 116 DWLHLTALIHDLGKVLAFGGEPQ 138 (204)
T ss_pred cHHHHHHHHHHHHHHHHhcCCcc
Confidence 58999999999999987666544
No 194
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=24.59 E-value=1e+02 Score=32.49 Aligned_cols=78 Identities=21% Similarity=0.245 Sum_probs=40.7
Q ss_pred HHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeC---hHHHHHHHHh-hhhccCCCCCCceEE
Q 008139 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLT---GEQEAKFVYM-GVLQFLPVFDRLVLS 147 (576)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIs---g~eEA~l~~~-gv~~~l~~~~~~~lv 147 (576)
+++..+.++.++.. ++.+|....+.++. .+.+.+.++ ..|+++.+.+ ++.+..+.-. .+...... +.-.|
T Consensus 11 l~~l~~~~~~~~~~--~~livtd~~~~~~~-~~~v~~~l~-~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~--~~d~I 84 (348)
T cd08175 11 LERLPEILKEFGYK--KALIVADENTYAAA-GKKVEALLK-RAGVVVLLIVLPAGDLIADEKAVGRVLKELER--DTDLI 84 (348)
T ss_pred HHHHHHHHHhcCCC--cEEEEECCcHHHHH-HHHHHHHHH-HCCCeeEEeecCCCcccCCHHHHHHHHHHhhc--cCCEE
Confidence 33444455566663 56667666566554 555555554 4688776543 3212222211 11111111 22389
Q ss_pred EEeCCCce
Q 008139 148 VDIGGGST 155 (576)
Q Consensus 148 iDIGGGSt 155 (576)
+=|||||+
T Consensus 85 IaIGGGs~ 92 (348)
T cd08175 85 IAVGSGTI 92 (348)
T ss_pred EEECCcHH
Confidence 99999995
No 195
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=24.50 E-value=1.4e+02 Score=31.24 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=38.5
Q ss_pred HHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHH--HHH-HhhhhccCCCCCCceEEEEeCCC
Q 008139 77 DIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEA--KFV-YMGVLQFLPVFDRLVLSVDIGGG 153 (576)
Q Consensus 77 ~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i~vIsg~eEA--~l~-~~gv~~~l~~~~~~~lviDIGGG 153 (576)
+.++.++.. .++.+|....+.+.. ++.+.+.++ +.|+++.+.+++.+. .+. ...+...+.. +.-+|+=||||
T Consensus 16 ~~~~~~~~~-~kvlivtd~~~~~~~-~~~i~~~L~-~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~--~~d~IIaiGGG 90 (332)
T cd08549 16 PIINKIGVN-SKIMIVCGNNTYKVA-GKEIIERLE-SNNFTKEVLERDSLLIPDEYELGEVLIKLDK--DTEFLLGIGSG 90 (332)
T ss_pred HHHHHcCCC-CcEEEEECCcHHHHH-HHHHHHHHH-HcCCeEEEEecCCCCCCCHHHHHHHHHHhhc--CCCEEEEECCc
Confidence 344445532 256777766665542 455555444 458888887644332 111 1111111111 23489999999
Q ss_pred ce
Q 008139 154 ST 155 (576)
Q Consensus 154 St 155 (576)
|+
T Consensus 91 sv 92 (332)
T cd08549 91 TI 92 (332)
T ss_pred HH
Confidence 86
No 196
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=24.29 E-value=2.4e+02 Score=31.39 Aligned_cols=57 Identities=11% Similarity=0.046 Sum_probs=37.2
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeee-eeeeeccCCCcCCCCCHHHHHHHHHHHH
Q 008139 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLK-QPVILGRDLSSSCSISTQSQARSVESLL 73 (576)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k-~~vrLg~~~~~~g~Ls~e~i~r~~~~L~ 73 (576)
..-+||||+-|+-+.+++ ++.+....+.. =.|||-+..+.++..+++.+.++.+.+.
T Consensus 133 ~~lviDIGGGStEl~~~~---~~~~~~~~Sl~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~ 190 (496)
T PRK11031 133 QRLVVDIGGASTELVTGT---GAQATSLFSLSMGCVTWLERYFKDRNLTQENFDAAEKAAR 190 (496)
T ss_pred CEEEEEecCCeeeEEEec---CCceeeeeEEeccchHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 368999999999999885 34333322222 2357766666777778776666555544
No 197
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=24.12 E-value=1.7e+02 Score=30.98 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=35.2
Q ss_pred cchHHHHHHHHHHhhcccccCCCC-chhhhHHHHHcCCCCCCCCHHHHHHHH--HHHHhccCCC
Q 008139 396 DKDLEYLEAACLLHNIGHFTSKKG-YHKQSCHIIMNGDHLYGYSTDEIKLIA--LLTRFHRKKF 456 (576)
Q Consensus 396 ~~~r~LL~~AalLHdIG~~I~~~~-h~~Hs~yiI~ns~~l~G~s~~E~~~iA--~i~ryhrk~~ 456 (576)
.+.|.-+.+|++|.-++ ++..+ ..-|+..--+.. .+++.|-+..-+. .+.+|+....
T Consensus 230 ~~ar~~l~~as~laG~a--~~~~~~g~~H~l~h~l~~--~~~i~HG~~~a~~lp~v~~~~~~~~ 289 (367)
T cd08182 230 LEARAKMAEASLLAGLA--ISNTRTTAAHAISYPLTS--RYGVPHGLACALTLPALLRINLEAL 289 (367)
T ss_pred HHHHHHHHHHHHHHHHH--HhchhHHHHHHHhchhhc--CCCCChHHHHHHHHHHHHHHhhhhC
Confidence 35577888889998544 44332 344654322333 5788999987555 4778776543
No 198
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=23.81 E-value=4.7e+02 Score=23.97 Aligned_cols=87 Identities=15% Similarity=0.250 Sum_probs=54.5
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEe
Q 008139 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (576)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (576)
.+.++|.|+-+|=..+.+.. ..--.++...+.. ++ .+ ..++...+++++|++. ..+||
T Consensus 3 ~ilalD~G~KrIGvA~sd~~-~~~A~pl~~i~~~---------~~--~~-------~~~~~l~~li~~~~~~---~vVVG 60 (141)
T COG0816 3 RILALDVGTKRIGVAVSDIL-GSLASPLETIKRK---------NG--KP-------QDFNALLKLVKEYQVD---TVVVG 60 (141)
T ss_pred eEEEEecCCceEEEEEecCC-Cccccchhhheec---------cc--cH-------hhHHHHHHHHHHhCCC---EEEEe
Confidence 57899999999988887653 1112233222111 00 00 2345555667777773 45554
Q ss_pred -------ehhhhhcCChHHHHHHHHHHcCCcEEEeCh
Q 008139 94 -------TAAVRAAENKDEFVECVREKVGFEVDVLTG 123 (576)
Q Consensus 94 -------TsAvR~A~N~~~fl~~i~~~tG~~i~vIsg 123 (576)
|... .++-...|.++++++++++|...+.
T Consensus 61 lP~~m~g~~~~-~~~~~~~f~~~L~~r~~lpv~l~DE 96 (141)
T COG0816 61 LPLNMDGTEGP-RAELARKFAERLKKRFNLPVVLWDE 96 (141)
T ss_pred cCcCCCCCcch-hHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4555 4555789999999999999988764
No 199
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=23.27 E-value=88 Score=32.98 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=38.5
Q ss_pred HHHHHHHHHHCCCCcccEEEEeehhhhhcCChHHHHHHHHHHcCCcE--EEeChHHHHHHHHhhhhccCCCCCCceEEEE
Q 008139 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV--DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVD 149 (576)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~~~tG~~i--~vIsg~eEA~l~~~gv~~~l~~~~~~~lviD 149 (576)
+.+..+.++.+| . ++.+|....+.+ ...+.+.+.+++. |+.+ .+.+|+-.-.-.-.++..... .+.-+|+=
T Consensus 11 ~~~l~~~~~~~g-~--~~liv~~~~~~~-~~~~~v~~~l~~~-~i~~~~~~~~~~p~~~~v~~~~~~~~~--~~~d~IIa 83 (349)
T cd08550 11 IKEIAAILSTFG-S--KVAVVGGKTVLK-KSRPRFEAALAKS-IIVVDVIVFGGECSTEEVVKALCGAEE--QEADVIIG 83 (349)
T ss_pred HHHHHHHHHHcC-C--eEEEEEChHHHH-HHHHHHHHHHHhc-CCeeEEEEcCCCCCHHHHHHHHHHHHh--cCCCEEEE
Confidence 344444556677 3 456666655555 4456666665543 6644 455654110011111111111 12238999
Q ss_pred eCCCce
Q 008139 150 IGGGST 155 (576)
Q Consensus 150 IGGGSt 155 (576)
|||||+
T Consensus 84 vGGGs~ 89 (349)
T cd08550 84 VGGGKT 89 (349)
T ss_pred ecCcHH
Confidence 999996
No 200
>PF13941 MutL: MutL protein
Probab=22.88 E-value=1.5e+02 Score=32.64 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=35.1
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeecc-CCCcCCCCCHHHHHHHHHHHHHH
Q 008139 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGR-DLSSSCSISTQSQARSVESLLMF 75 (576)
Q Consensus 15 ~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~-~~~~~g~Ls~e~i~r~~~~L~~f 75 (576)
+=++||||-..+...++.. .+..+++..-..++.... ++ ..++.++++.|++-
T Consensus 2 ~L~~DiGST~Tk~~l~d~~-~~~~~~ig~a~apTTv~~~Dv-------~~G~~~A~~~l~~~ 55 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLV-DGEPRLIGQAEAPTTVEPGDV-------TIGLNNALEQLEEQ 55 (457)
T ss_pred EEEEEeCCcceEEeEEecc-CCccEEEEEEeCCCCcCcccH-------HHHHHHHHHHHHHh
Confidence 3589999999999999954 566788876666655533 21 24455555555443
No 201
>PRK13318 pantothenate kinase; Reviewed
Probab=22.75 E-value=1.4e+02 Score=30.09 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=24.4
Q ss_pred eEEEEeCCCceeEEEeeCCeEeeEEeech
Q 008139 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNL 173 (576)
Q Consensus 145 ~lviDIGGGStEl~~~~~~~~~~~~Slpl 173 (576)
.+.+||||-++-+.+++++++....++|.
T Consensus 2 iL~IDIGnT~iK~al~d~g~i~~~~~~~t 30 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGKLVAHWRIST 30 (258)
T ss_pred EEEEEECCCcEEEEEEECCEEEEEEEEeC
Confidence 47899999999999999888877766653
No 202
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=22.13 E-value=1.8e+02 Score=26.17 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=51.8
Q ss_pred EEEecccceEEEEEEEeCCCCE-EEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEe--
Q 008139 17 SIDMGTSSFKLLIIRAYPNGKF-LTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA-- 93 (576)
Q Consensus 17 vIDIGSNsirL~I~e~~~~~~~-~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA-- 93 (576)
+||.|+..|=+.+.+. .+.+ .++..... .+. ...+..+.+++++|++. -.+||
T Consensus 2 aiD~G~kriGvA~~d~--~~~~a~pl~~i~~---------~~~----------~~~~~~l~~~i~~~~~~---~iVvGlP 57 (130)
T TIGR00250 2 GLDFGTKSIGVAGQDI--TGWTAQGIPTIKA---------QDG----------EPDWSRIEELLKEWTPD---KIVVGLP 57 (130)
T ss_pred eEccCCCeEEEEEECC--CCCEEeceEEEEe---------cCC----------cHHHHHHHHHHHHcCCC---EEEEecc
Confidence 6899998887776643 3322 22222111 000 03456777788899984 46677
Q ss_pred ----ehhhhhcCChHHHHHHHHHHcCCcEEEeCh
Q 008139 94 ----TAAVRAAENKDEFVECVREKVGFEVDVLTG 123 (576)
Q Consensus 94 ----TsAvR~A~N~~~fl~~i~~~tG~~i~vIsg 123 (576)
-+.=..|.-...|.++++..+|++|...+.
T Consensus 58 ~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DE 91 (130)
T TIGR00250 58 LNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDE 91 (130)
T ss_pred CCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 222233445568999999999999998874
No 203
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=22.05 E-value=1.4e+02 Score=29.81 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhccc
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH 413 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~ 413 (576)
.||-.|....-.+..... +.. .+++-+..-|-+||+.||+|.
T Consensus 5 ~Ha~dV~q~~~~ll~~~~----~~~-------~l~~~e~~alliAal~HDv~H 46 (237)
T PF00233_consen 5 RHAADVLQFVYYLLSNGG----LRE-------YLSPLEIFALLIAALCHDVDH 46 (237)
T ss_dssp HHHHHHHHHHHHHHHHGG----GGT-------TS-HHHHHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHHHHHHccC----ccc-------cCCHHHHHHHHHHHHHhcCCC
Confidence 577777666655443221 111 256677888999999999994
No 204
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=21.83 E-value=81 Score=29.89 Aligned_cols=46 Identities=24% Similarity=0.254 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhcccCcchHHHHHHHHHHhhcccccCCCCchhh
Q 008139 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQ 423 (576)
Q Consensus 361 ~ha~~V~~~A~~LFd~l~~~~~l~~~~~~~~~~~~~~~r~LL~~AalLHdIG~~I~~~~h~~H 423 (576)
.|+..++.+|..|-..+.. .......+|++|||||..+-.....++
T Consensus 97 ~~s~~~a~~a~~la~~~~~-----------------~~~~~a~~~gLL~~iG~l~l~~~~~~~ 142 (196)
T PF08668_consen 97 RHSLAAAAIARRLARELGF-----------------DDPDEAYLAGLLHDIGKLLLLSLFPEY 142 (196)
T ss_dssp HHHHHHHHHHHHHHHHCTC-----------------CHHHHHHHHHHHTTHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-----------------CCHHHHHHHHHHHHHhHHHHHHHhHHH
Confidence 4666777777765433321 123568899999999998866554443
No 205
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=21.54 E-value=9e+02 Score=24.88 Aligned_cols=104 Identities=11% Similarity=0.065 Sum_probs=63.3
Q ss_pred HHHHHHHHHHCCCCcccEEEEeehh-------hhhcCChHHHHHHHHHHcCCcEEEeChHHH-HHHHHhhhhccCCCCCC
Q 008139 72 LLMFRDIIQSHNISRDHTRAVATAA-------VRAAENKDEFVECVREKVGFEVDVLTGEQE-AKFVYMGVLQFLPVFDR 143 (576)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA-------vR~A~N~~~fl~~i~~~tG~~i~vIsg~eE-A~l~~~gv~~~l~~~~~ 143 (576)
+.-..+.+++.+++..++.+||.+. +|-+-+ +.+.+...+++++--+|--+= |+..|+. +. + ...
T Consensus 53 ~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrvg~~---~Ak~la~~~~~p~~~v~hl~~ha~~a~~~--s~-~-~~~ 125 (305)
T TIGR00329 53 PPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRVGAT---FARSLALSLDKPLIGVNHLLGHIYAPRLD--TN-I-LQF 125 (305)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHHHHH---HHHHHHHHhCCCEeecccHHHHHHHhhhh--cC-C-CCC
Confidence 3345556677777766666777665 887664 455566677899888865542 2222221 11 1 124
Q ss_pred ceEEEEeCCCceeEEEeeCC-eEee-EEeechhHHHHHHhh
Q 008139 144 LVLSVDIGGGSTEFVIGKRG-KVVF-CESVNLGHVSLSEKF 182 (576)
Q Consensus 144 ~~lviDIGGGStEl~~~~~~-~~~~-~~SlplG~vrl~e~f 182 (576)
+++++=+-||+|++..++++ ++.. ..+++..+-++.+.+
T Consensus 126 ~~l~l~vsGG~t~l~~~~~~~~~~~l~~t~d~S~GrlfD~v 166 (305)
T TIGR00329 126 PFVSLLVSGGHTQIIAVKGIGDYEVLGETLDDAVGEAFDKV 166 (305)
T ss_pred CcEEEEEcCCceEEEEEeCCCcEEEeeeecCchhhHHHHHH
Confidence 47888888999999998876 4331 225555555555543
No 206
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=21.32 E-value=3.8e+02 Score=28.35 Aligned_cols=71 Identities=28% Similarity=0.347 Sum_probs=34.8
Q ss_pred HHHHCCCCcccEEEEeehhhhhcCChHHHHHHHH---HHcCCcEEE--eCh-HHHHH----HHHhhhhccCCCCCCceEE
Q 008139 78 IIQSHNISRDHTRAVATAAVRAAENKDEFVECVR---EKVGFEVDV--LTG-EQEAK----FVYMGVLQFLPVFDRLVLS 147 (576)
Q Consensus 78 ~~~~~~v~~~~i~~vATsAvR~A~N~~~fl~~i~---~~tG~~i~v--Isg-~eEA~----l~~~gv~~~l~~~~~~~lv 147 (576)
.++.++. .++.+|....+.+ .+.+++. +..|+++.+ +++ +.+.. ............ .+.-+|
T Consensus 25 ~l~~~~~--~~~livtd~~~~~-----~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~-~r~d~I 96 (358)
T PRK00002 25 LLAPLKG--KKVAIVTDETVAP-----LYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGL-DRSDTL 96 (358)
T ss_pred HHHhcCC--CeEEEEECCchHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCC-CCCCEE
Confidence 3344443 2566677666644 2444443 345887774 443 22222 111111222221 122489
Q ss_pred EEeCCCcee
Q 008139 148 VDIGGGSTE 156 (576)
Q Consensus 148 iDIGGGStE 156 (576)
+=|||||+-
T Consensus 97 IavGGGsv~ 105 (358)
T PRK00002 97 IALGGGVIG 105 (358)
T ss_pred EEEcCcHHH
Confidence 999999963
No 207
>KOG3782 consensus Predicted membrane protein, contains type II SA sequence [General function prediction only]
Probab=21.06 E-value=2.2e+02 Score=26.79 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=40.1
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEeehh
Q 008139 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAA 96 (576)
Q Consensus 17 vIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA 96 (576)
-||+|| ++++|+|+-..+ .||+++.- .--.|-|+.+|+-++.|......-.=...-++.++|.-
T Consensus 49 ~i~vgs-------FR~~p~G~q~~~-----kV~yarSE----~hLTEl~E~iCd~mk~Y~~~~~~stgk~~yv~~~~~~~ 112 (189)
T KOG3782|consen 49 MIDVGS-------FRLDPQGNQISK-----KVRYARSE----MHLTELMEKICDKMKDYLKATYKSTGKFTYVKMIINGQ 112 (189)
T ss_pred eeeecc-------eEECCCCCeeee-----eeccchhH----HHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEeccCC
Confidence 588886 566787864433 16666542 23468899999999999876532211112456666654
Q ss_pred h
Q 008139 97 V 97 (576)
Q Consensus 97 v 97 (576)
.
T Consensus 113 ~ 113 (189)
T KOG3782|consen 113 M 113 (189)
T ss_pred C
Confidence 3
No 208
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=20.94 E-value=93 Score=33.23 Aligned_cols=90 Identities=19% Similarity=0.134 Sum_probs=55.6
Q ss_pred HCCCCcccEEEEeehhhhh-cCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceeEEE
Q 008139 81 SHNISRDHTRAVATAAVRA-AENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (576)
Q Consensus 81 ~~~v~~~~i~~vATsAvR~-A~N~~~fl~~i~~~tG~~i~vIsg~eEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~ 159 (576)
...+++...=++-|++.=+ -.|++...+...+...++.=-|- .++-++.++ .....++|+|||+++|-++-
T Consensus 99 ~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~--k~~v~~AFA------~GrstalVvDiGa~~~svsP 170 (426)
T KOG0679|consen 99 QLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLA--KTAVCTAFA------NGRSTALVVDIGATHTSVSP 170 (426)
T ss_pred hhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEe--chHHHHHHh------cCCCceEEEEecCCCceeee
Confidence 3456665566666766433 34667777777777776655443 233333322 23445899999999999999
Q ss_pred eeCCeEeeE--EeechhHHHH
Q 008139 160 GKRGKVVFC--ESVNLGHVSL 178 (576)
Q Consensus 160 ~~~~~~~~~--~SlplG~vrl 178 (576)
+.+|-+... ..=|+|.=-|
T Consensus 171 V~DG~Vlqk~vvks~laGdFl 191 (426)
T KOG0679|consen 171 VHDGYVLQKGVVKSPLAGDFL 191 (426)
T ss_pred eecceEeeeeeEecccchHHH
Confidence 999876632 2335554333
No 209
>COG2254 Predicted HD superfamily hydrolase, possibly a nuclease [DNA replication, recombination, and repair]
Probab=20.94 E-value=38 Score=33.61 Aligned_cols=31 Identities=26% Similarity=0.149 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHhhccc--------ccC--CCCchhhhHHH
Q 008139 397 KDLEYLEAACLLHNIGH--------FTS--KKGYHKQSCHI 427 (576)
Q Consensus 397 ~~r~LL~~AalLHdIG~--------~I~--~~~h~~Hs~yi 427 (576)
..+++++.|-.|||||+ +.+ ++.|---|+|+
T Consensus 49 ~v~~~vk~AiilHDiGKa~~~yQ~~~~~~~~~~HE~~Say~ 89 (230)
T COG2254 49 KVEELVKLAIILHDIGKASEAYQKGRGNDCFYYHELVSAYF 89 (230)
T ss_pred HHHHHHHHeeEEeechhhHHHHHHhcccCcccchhhHHHHH
Confidence 45689999999999998 445 55666777775
No 210
>PF14829 GPAT_N: Glycerol-3-phosphate acyltransferase N-terminal; PDB: 1IUQ_A 1K30_A.
Probab=20.48 E-value=69 Score=26.01 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=32.9
Q ss_pred hhhhhcCChHHHHHHHHHHc---CCcEEEeChHHHHHHHHhhhh
Q 008139 95 AAVRAAENKDEFVECVREKV---GFEVDVLTGEQEAKFVYMGVL 135 (576)
Q Consensus 95 sAvR~A~N~~~fl~~i~~~t---G~~i~vIsg~eEA~l~~~gv~ 135 (576)
..+.+|.|-++|+..|++++ -++-.|-.|-||-|..|.-+.
T Consensus 3 r~fl~~~~Eqells~IkkeveaGkLP~~va~gmeelY~NYk~AV 46 (77)
T PF14829_consen 3 RTFLDARSEQELLSGIKKEVEAGKLPANVAAGMEELYQNYKNAV 46 (77)
T ss_dssp -GGGG--SHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHH
Confidence 46789999999999999886 588999999999999999554
No 211
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=20.44 E-value=5.4e+02 Score=26.31 Aligned_cols=129 Identities=23% Similarity=0.282 Sum_probs=80.7
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccEEEEe
Q 008139 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (576)
Q Consensus 14 ~~AvIDIGSNsirL~I~e~~~~~~~~~l~~~k~~vrLg~~~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (576)
.+..||||.-...+... +|....++..--| +-. .-+|+-++|+++... +.+ +.+-+|-
T Consensus 4 kilGiDIGGAntk~a~~----DG~~~~~d~~YlP------MWk-------~k~rL~~~Lkei~~k---~~~--~~vgvvM 61 (330)
T COG1548 4 KILGIDIGGANTKIASS----DGDNYKIDHIYLP------MWK-------KKDRLEETLKEIVHK---DNV--DYVGVVM 61 (330)
T ss_pred eEEEeeccCccchhhhc----cCCeeeeeEEEec------ccc-------chhHHHHHHHHHhcc---CCc--ceeEEEe
Confidence 36889999888777663 4543333322111 111 124555677776643 555 3577888
Q ss_pred ehhhhhcCCh-----HHHHHHHHHHcCCcEEEeChH-----HHHHHHHhhhh--cc------C-CCCCCceEEEEeCCCc
Q 008139 94 TAAVRAAENK-----DEFVECVREKVGFEVDVLTGE-----QEAKFVYMGVL--QF------L-PVFDRLVLSVDIGGGS 154 (576)
Q Consensus 94 TsAvR~A~N~-----~~fl~~i~~~tG~~i~vIsg~-----eEA~l~~~gv~--~~------l-~~~~~~~lviDIGGGS 154 (576)
|+-+-+|=|. +++++.++...+-++.+++-+ -||.=.+.-+. +. + ....++.+++|+|+-.
T Consensus 62 TaELaD~f~tk~eGVe~Ii~~v~~Af~~pv~~v~~~G~~~ssEa~~~~~~vAAaNW~Ata~~~~e~~~dsci~VD~GSTT 141 (330)
T COG1548 62 TAELADAFKTKAEGVEDIIDTVEKAFNCPVYVVDVNGNFLSSEALKNPREVAAANWVATARFLAEEIKDSCILVDMGSTT 141 (330)
T ss_pred eHHHHHHhhhHHhHHHHHHHHHHHhcCCceEEEeccCcCcChhHhcCHHHHHHhhhHHHHHHHHHhcCCceEEEecCCcc
Confidence 9999887553 578899999999998887532 15543333332 21 1 1123458999999999
Q ss_pred eeEEEeeCCe
Q 008139 155 TEFVIGKRGK 164 (576)
Q Consensus 155 tEl~~~~~~~ 164 (576)
|.|+-..+|.
T Consensus 142 tDIIPi~~ge 151 (330)
T COG1548 142 TDIIPIKDGE 151 (330)
T ss_pred cceEeecchh
Confidence 9999876653
No 212
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.36 E-value=1.1e+02 Score=35.60 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=25.8
Q ss_pred ceEEEEeCCCceeEEEeeCCeEeeEEeechhH
Q 008139 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGH 175 (576)
Q Consensus 144 ~~lviDIGGGStEl~~~~~~~~~~~~SlplG~ 175 (576)
+.+++|+||=||-++.+.+|.+..+..--++-
T Consensus 279 ~~i~~DmGGTStDva~i~~G~pe~~~e~~v~G 310 (674)
T COG0145 279 NAIVFDMGGTSTDVALIIDGEPEISSETEVAG 310 (674)
T ss_pred CEEEEEcCCcceeeeeeecCcEEeeccceEEc
Confidence 48999999999999999999887655544443
Done!