Query 008142
Match_columns 576
No_of_seqs 318 out of 2137
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 20:00:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02899 alpha-galactosidase 100.0 5E-115 1E-119 936.0 41.3 550 23-574 18-567 (633)
2 PLN03231 putative alpha-galact 100.0 6E-89 1.3E-93 707.6 29.7 351 36-391 1-356 (357)
3 PLN02229 alpha-galactosidase 100.0 1.9E-81 4.2E-86 662.1 31.1 333 29-451 56-408 (427)
4 PLN02808 alpha-galactosidase 100.0 5.8E-81 1.3E-85 654.8 29.0 341 22-451 18-374 (386)
5 PLN02692 alpha-galactosidase 100.0 9.6E-81 2.1E-85 654.2 28.8 335 28-451 48-399 (412)
6 KOG2366 Alpha-D-galactosidase 100.0 8.8E-67 1.9E-71 528.7 20.9 349 21-451 18-400 (414)
7 PF02065 Melibiase: Melibiase; 100.0 1.8E-31 3.9E-36 283.8 17.7 284 29-383 34-334 (394)
8 COG3345 GalA Alpha-galactosida 99.9 1.4E-22 3E-27 214.6 13.4 179 22-232 278-462 (687)
9 cd06592 GH31_glucosidase_KIAA1 99.8 4.4E-17 9.6E-22 169.4 22.9 202 34-284 12-227 (303)
10 PLN02355 probable galactinol-- 99.8 2.7E-17 5.8E-22 182.6 21.9 299 34-372 196-530 (758)
11 PLN02219 probable galactinol-- 99.7 9.6E-17 2.1E-21 177.9 21.7 297 32-372 190-522 (775)
12 PLN02684 Probable galactinol-- 99.7 1.4E-16 3E-21 176.5 22.5 295 38-372 204-521 (750)
13 PF05691 Raffinose_syn: Raffin 99.7 7.1E-16 1.5E-20 172.5 22.1 302 38-384 197-547 (747)
14 PLN02711 Probable galactinol-- 99.6 7.3E-15 1.6E-19 163.2 20.4 288 38-372 215-550 (777)
15 cd06593 GH31_xylosidase_YicI Y 99.6 7E-14 1.5E-18 145.8 18.1 194 49-289 20-235 (308)
16 PF14200 RicinB_lectin_2: Rici 99.5 7.2E-14 1.6E-18 122.5 7.9 77 492-572 23-104 (105)
17 cd00161 RICIN Ricin-type beta- 99.4 6.4E-13 1.4E-17 117.3 11.4 106 458-571 9-123 (124)
18 PLN02982 galactinol-raffinose 99.4 1.1E-11 2.4E-16 137.9 21.2 228 118-383 390-647 (865)
19 smart00458 RICIN Ricin-type be 99.4 1.2E-12 2.6E-17 115.5 10.0 103 458-572 6-116 (117)
20 PF00652 Ricin_B_lectin: Ricin 99.3 9.9E-12 2.1E-16 110.5 8.6 105 458-570 11-124 (124)
21 cd06604 GH31_glucosidase_II_Ma 99.2 5.5E-10 1.2E-14 118.1 20.0 195 50-289 21-248 (339)
22 PF01055 Glyco_hydro_31: Glyco 99.2 4.8E-10 1E-14 122.7 18.6 215 31-290 20-265 (441)
23 PRK10658 putative alpha-glucos 99.2 7.3E-10 1.6E-14 126.2 19.7 213 31-289 258-494 (665)
24 cd06591 GH31_xylosidase_XylS X 99.2 1.7E-09 3.7E-14 113.5 18.9 196 50-290 21-243 (319)
25 cd06597 GH31_transferase_CtsY 99.1 7.6E-09 1.6E-13 109.4 23.1 230 32-289 2-262 (340)
26 cd06598 GH31_transferase_CtsZ 99.1 2.7E-09 5.9E-14 111.8 18.6 201 50-290 21-243 (317)
27 cd06594 GH31_glucosidase_YihQ 99.1 7.4E-09 1.6E-13 108.5 21.8 195 51-288 21-245 (317)
28 cd06600 GH31_MGAM-like This fa 99.1 5.2E-09 1.1E-13 109.7 19.8 195 50-289 21-226 (317)
29 cd06599 GH31_glycosidase_Aec37 99.1 3.8E-09 8.2E-14 110.8 18.1 198 49-289 25-249 (317)
30 cd06602 GH31_MGAM_SI_GAA This 99.1 7.1E-09 1.5E-13 109.6 18.8 198 50-289 21-230 (339)
31 cd06595 GH31_xylosidase_XylS-l 99.0 9.8E-09 2.1E-13 106.4 17.5 189 50-288 22-222 (292)
32 COG1501 Alpha-glucosidases, fa 99.0 1.6E-08 3.5E-13 116.5 19.1 209 31-288 256-491 (772)
33 cd06601 GH31_lyase_GLase GLase 99.0 5.4E-08 1.2E-12 102.5 20.6 111 50-221 21-131 (332)
34 cd06589 GH31 The enzymes of gl 98.9 1.4E-07 3.1E-12 96.4 19.8 166 32-289 2-197 (265)
35 cd06603 GH31_GANC_GANAB_alpha 98.9 2.4E-07 5.3E-12 98.0 21.2 196 49-289 20-248 (339)
36 PLN02763 hydrolase, hydrolyzin 98.8 1.5E-07 3.2E-12 110.0 20.6 153 31-222 178-335 (978)
37 PRK10426 alpha-glucosidase; Pr 98.8 3.2E-07 7E-12 104.4 20.6 210 31-282 199-433 (635)
38 PF14200 RicinB_lectin_2: Rici 98.8 1E-08 2.3E-13 89.7 6.2 89 431-528 2-104 (105)
39 cd00161 RICIN Ricin-type beta- 98.7 3.7E-08 8E-13 86.6 8.9 72 493-572 9-82 (124)
40 smart00458 RICIN Ricin-type be 98.6 9.7E-08 2.1E-12 84.0 7.0 69 492-572 5-75 (117)
41 PF00652 Ricin_B_lectin: Ricin 98.4 8.3E-07 1.8E-11 78.7 7.0 80 486-572 4-85 (124)
42 PF10566 Glyco_hydro_97: Glyco 98.1 2.1E-05 4.6E-10 80.2 11.6 131 46-251 25-156 (273)
43 KOG1065 Maltase glucoamylase a 98.0 3.6E-05 7.8E-10 87.6 11.9 149 32-221 289-446 (805)
44 KOG3736 Polypeptide N-acetylga 97.5 0.00027 5.9E-09 78.7 7.7 100 457-572 462-572 (578)
45 KOG2366 Alpha-D-galactosidase 96.1 0.0016 3.5E-08 68.2 0.4 155 209-395 37-193 (414)
46 PF13200 DUF4015: Putative gly 95.9 0.074 1.6E-06 55.8 11.6 84 119-222 62-146 (316)
47 KOG3738 Predicted polypeptide 95.2 0.017 3.7E-07 61.0 3.9 103 459-571 441-552 (559)
48 TIGR01515 branching_enzym alph 94.7 0.48 1E-05 54.4 14.2 133 64-222 164-297 (613)
49 PF02638 DUF187: Glycosyl hydr 94.6 0.45 9.8E-06 50.0 12.5 89 119-221 71-162 (311)
50 KOG3736 Polypeptide N-acetylga 92.8 0.13 2.7E-06 58.0 4.7 71 491-572 461-532 (578)
51 PLN02361 alpha-amylase 92.4 2.4 5.3E-05 46.1 13.8 37 188-224 146-183 (401)
52 cd06596 GH31_CPE1046 CPE1046 i 92.3 1.9 4.1E-05 44.0 11.9 102 119-290 76-182 (261)
53 PLN00196 alpha-amylase; Provis 91.8 2.1 4.5E-05 47.0 12.7 35 188-222 170-205 (428)
54 PF14871 GHL6: Hypothetical gl 91.2 2.8 6E-05 38.4 10.9 124 61-220 4-131 (132)
55 PLN02784 alpha-amylase 91.1 3.2 6.9E-05 49.0 13.5 35 189-223 641-676 (894)
56 PRK14706 glycogen branching en 90.7 1.6 3.5E-05 50.3 10.9 141 55-222 166-308 (639)
57 smart00812 Alpha_L_fucos Alpha 90.2 4.6 0.0001 43.7 13.3 21 120-140 130-150 (384)
58 KOG1066 Glucosidase II catalyt 90.0 0.99 2.1E-05 51.3 8.0 137 31-207 349-491 (915)
59 TIGR02104 pulA_typeI pullulana 89.4 3.8 8.3E-05 47.1 12.5 57 190-248 288-345 (605)
60 PF01120 Alpha_L_fucos: Alpha- 87.6 3.6 7.8E-05 43.8 10.1 22 120-141 140-161 (346)
61 PRK12568 glycogen branching en 87.4 5.5 0.00012 46.6 12.1 141 55-222 268-410 (730)
62 COG1649 Uncharacterized protei 87.4 11 0.00024 41.1 13.6 122 119-252 116-272 (418)
63 PLN02960 alpha-amylase 87.1 12 0.00027 44.3 14.7 143 55-222 415-558 (897)
64 TIGR02403 trehalose_treC alpha 86.9 15 0.00032 41.7 15.1 34 189-222 162-195 (543)
65 PLN02447 1,4-alpha-glucan-bran 86.6 5 0.00011 47.1 11.2 134 64-222 258-392 (758)
66 PRK14705 glycogen branching en 86.5 3.9 8.6E-05 50.3 10.7 132 64-222 773-906 (1224)
67 COG0296 GlgB 1,4-alpha-glucan 86.5 4.3 9.2E-05 46.5 10.3 133 55-222 163-305 (628)
68 PRK12313 glycogen branching en 85.7 15 0.00033 42.4 14.6 132 64-222 178-311 (633)
69 TIGR02402 trehalose_TreZ malto 85.6 9.8 0.00021 43.2 12.7 105 118-245 160-271 (542)
70 PRK10785 maltodextrin glucosid 85.4 17 0.00037 41.7 14.8 173 51-248 177-369 (598)
71 KOG3738 Predicted polypeptide 85.1 0.32 6.9E-06 51.8 0.5 72 493-572 440-513 (559)
72 PRK05402 glycogen branching en 84.0 14 0.00031 43.4 13.5 141 55-222 264-406 (726)
73 PRK10933 trehalose-6-phosphate 81.5 21 0.00045 40.6 13.2 34 189-222 169-202 (551)
74 KOG3737 Predicted polypeptide 80.8 3.7 8E-05 43.9 6.3 100 457-570 488-595 (603)
75 TIGR02103 pullul_strch alpha-1 79.3 17 0.00037 43.6 11.9 58 191-250 466-524 (898)
76 KOG3737 Predicted polypeptide 78.3 2.3 5E-05 45.3 3.9 74 483-571 480-555 (603)
77 TIGR02456 treS_nterm trehalose 78.0 24 0.00053 39.9 12.4 34 189-222 166-199 (539)
78 COG1523 PulA Type II secretory 70.8 27 0.00058 40.8 10.4 34 189-222 327-361 (697)
79 PLN02877 alpha-amylase/limit d 69.2 43 0.00093 40.6 11.8 58 192-251 530-596 (970)
80 TIGR02102 pullulan_Gpos pullul 67.8 39 0.00085 41.6 11.3 57 190-248 611-668 (1111)
81 PF03498 CDtoxinA: Cytolethal 66.2 10 0.00023 35.5 4.9 63 492-562 60-127 (150)
82 PRK14510 putative bifunctional 65.5 39 0.00085 42.2 10.9 57 190-246 312-369 (1221)
83 TIGR02100 glgX_debranch glycog 64.1 35 0.00076 39.9 9.7 34 190-223 310-344 (688)
84 cd02931 ER_like_FMN Enoate red 63.8 34 0.00073 37.0 9.0 80 48-140 138-227 (382)
85 PRK03705 glycogen debranching 63.0 36 0.00077 39.7 9.4 34 190-223 305-339 (658)
86 COG1306 Uncharacterized conser 61.9 72 0.0016 33.3 10.2 37 186-222 182-218 (400)
87 PF01791 DeoC: DeoC/LacD famil 61.1 45 0.00098 33.2 8.8 52 200-251 146-201 (236)
88 PLN03244 alpha-amylase; Provis 60.2 24 0.00053 41.5 7.3 91 119-222 442-533 (872)
89 PF13199 Glyco_hydro_66: Glyco 60.1 30 0.00065 39.4 7.9 273 29-360 96-392 (559)
90 PF00128 Alpha-amylase: Alpha 58.9 22 0.00048 35.9 6.3 62 187-250 135-197 (316)
91 cd06414 GH25_LytC-like The Lyt 58.2 9.2 0.0002 37.0 3.1 74 46-142 63-137 (191)
92 PF07302 AroM: AroM protein; 57.1 16 0.00034 36.5 4.5 140 50-250 67-209 (221)
93 cd06522 GH25_AtlA-like AtlA is 57.0 1.5E+02 0.0032 28.6 11.3 20 119-138 43-62 (192)
94 PRK09441 cytoplasmic alpha-amy 55.5 29 0.00063 38.6 6.9 54 188-243 200-254 (479)
95 KOG3340 Alpha-L-fucosidase [Ca 53.8 20 0.00043 37.7 4.7 23 120-142 152-174 (454)
96 cd06522 GH25_AtlA-like AtlA is 53.7 17 0.00038 35.1 4.2 67 46-141 63-133 (192)
97 PF02571 CbiJ: Precorrin-6x re 53.3 81 0.0018 32.1 9.1 62 190-251 70-138 (249)
98 cd06416 GH25_Lys1-like Lys-1 i 52.8 12 0.00026 36.3 2.9 23 119-141 111-133 (196)
99 cd02803 OYE_like_FMN_family Ol 52.8 1.9E+02 0.0042 30.1 12.3 32 48-79 129-163 (327)
100 KOG3111 D-ribulose-5-phosphate 51.6 16 0.00035 35.6 3.5 25 119-143 100-124 (224)
101 TIGR01370 cysRS possible cyste 51.3 1.1E+02 0.0024 32.2 10.0 84 121-222 84-169 (315)
102 PRK13523 NADPH dehydrogenase N 51.3 61 0.0013 34.4 8.2 73 48-138 130-214 (337)
103 COG1902 NemA NADH:flavin oxido 48.6 78 0.0017 34.1 8.5 76 47-140 136-225 (363)
104 COG3469 Chitinase [Carbohydrat 48.3 34 0.00073 34.8 5.2 54 199-252 120-180 (332)
105 cd04735 OYE_like_4_FMN Old yel 46.1 93 0.002 33.2 8.7 75 47-139 131-223 (353)
106 PRK06852 aldolase; Validated 45.9 1.1E+02 0.0024 32.1 8.9 50 201-252 189-239 (304)
107 PF02449 Glyco_hydro_42: Beta- 45.3 40 0.00086 36.2 5.8 61 50-139 7-68 (374)
108 COG3669 Alpha-L-fucosidase [Ca 44.9 86 0.0019 34.0 7.9 23 120-142 103-125 (430)
109 cd04733 OYE_like_2_FMN Old yel 43.0 99 0.0022 32.7 8.3 75 47-139 136-224 (338)
110 PF03102 NeuB: NeuB family; I 42.6 80 0.0017 32.0 7.1 16 119-134 57-72 (241)
111 PRK13840 sucrose phosphorylase 42.6 28 0.00061 39.0 4.1 57 188-244 161-228 (495)
112 cd02932 OYE_YqiM_FMN Old yello 41.2 1.2E+02 0.0026 32.0 8.5 73 48-138 142-228 (336)
113 PF14488 DUF4434: Domain of un 41.2 59 0.0013 30.9 5.6 74 47-140 14-89 (166)
114 cd06415 GH25_Cpl1-like Cpl-1 l 41.0 3.4E+02 0.0073 26.2 12.2 20 119-138 39-58 (196)
115 cd02933 OYE_like_FMN Old yello 39.9 4.8E+02 0.01 27.6 13.2 70 48-130 140-215 (338)
116 COG3325 ChiA Chitinase [Carboh 39.5 92 0.002 34.1 7.2 65 187-251 141-223 (441)
117 COG1830 FbaB DhnA-type fructos 39.4 1.5E+02 0.0033 30.4 8.4 43 203-252 169-211 (265)
118 cd06545 GH18_3CO4_chitinase Th 39.1 2.3E+02 0.005 28.4 10.0 50 199-251 85-138 (253)
119 cd06415 GH25_Cpl1-like Cpl-1 l 39.0 31 0.00067 33.5 3.4 23 119-141 109-131 (196)
120 cd02930 DCR_FMN 2,4-dienoyl-Co 38.8 1E+02 0.0022 32.8 7.6 30 48-77 125-157 (353)
121 TIGR00060 L18_bact ribosomal p 38.6 59 0.0013 29.1 4.8 51 51-134 64-114 (114)
122 cd02875 GH18_chitobiase Chitob 36.3 1E+02 0.0023 32.9 7.2 57 195-251 93-157 (358)
123 TIGR03569 NeuB_NnaB N-acetylne 36.3 97 0.0021 32.9 6.8 17 118-134 76-92 (329)
124 cd02874 GH18_CFLE_spore_hydrol 36.2 80 0.0017 32.8 6.2 50 195-244 84-138 (313)
125 TIGR03852 sucrose_gtfA sucrose 35.9 40 0.00087 37.5 4.0 35 188-222 157-191 (470)
126 cd06546 GH18_CTS3_chitinase GH 35.2 4.8E+02 0.011 26.4 11.6 53 198-252 97-150 (256)
127 CHL00139 rpl18 ribosomal prote 33.8 80 0.0017 28.0 4.8 53 49-134 57-109 (109)
128 cd02871 GH18_chitinase_D-like 33.8 1.3E+02 0.0028 31.5 7.3 56 197-252 94-155 (312)
129 cd03465 URO-D_like The URO-D _ 33.4 1.6E+02 0.0035 30.5 8.0 54 65-139 176-229 (330)
130 PRK06769 hypothetical protein; 33.3 79 0.0017 29.9 5.1 21 119-139 32-52 (173)
131 cd08577 PI-PLCc_GDPD_SF_unchar 33.2 88 0.0019 31.3 5.7 21 120-140 187-207 (228)
132 cd06549 GH18_trifunctional GH1 32.9 1E+02 0.0022 31.9 6.4 55 195-249 85-144 (298)
133 KOG0470 1,4-alpha-glucan branc 32.4 1.3E+02 0.0028 35.2 7.3 32 191-222 372-404 (757)
134 PRK08227 autoinducer 2 aldolas 32.2 2.8E+02 0.006 28.6 9.1 43 201-252 159-201 (264)
135 PF00016 RuBisCO_large: Ribulo 32.2 93 0.002 32.7 5.8 50 202-251 32-88 (309)
136 cd00599 GH25_muramidase Endo-N 30.9 24 0.00052 33.6 1.2 24 119-142 105-129 (186)
137 TIGR03326 rubisco_III ribulose 30.7 96 0.0021 34.0 5.8 51 201-251 161-218 (412)
138 PF01183 Glyco_hydro_25: Glyco 28.7 62 0.0013 30.7 3.6 72 45-141 56-130 (181)
139 cd08207 RLP_NonPhot Ribulose b 28.0 1E+02 0.0023 33.7 5.5 50 202-251 161-217 (406)
140 TIGR03332 salvage_mtnW 2,3-dik 27.8 1E+02 0.0022 33.7 5.4 52 201-252 156-214 (407)
141 cd08607 GDPD_GDE5 Glycerophosp 27.8 1.1E+02 0.0023 31.4 5.5 17 206-222 274-290 (290)
142 cd08148 RuBisCO_large Ribulose 27.8 1E+02 0.0022 33.3 5.3 52 201-252 144-202 (366)
143 smart00642 Aamy Alpha-amylase 27.5 1.5E+02 0.0032 28.1 5.9 18 119-136 71-88 (166)
144 cd06548 GH18_chitinase The GH1 27.4 1.4E+02 0.0029 31.3 6.2 54 199-252 111-182 (322)
145 PRK08883 ribulose-phosphate 3- 27.0 6.3E+02 0.014 25.0 11.2 98 64-255 19-118 (220)
146 cd08209 RLP_DK-MTP-1-P-enolase 26.9 1.1E+02 0.0023 33.4 5.3 51 201-251 141-198 (391)
147 PTZ00032 60S ribosomal protein 26.6 1.2E+02 0.0025 29.9 4.9 51 51-134 161-211 (211)
148 PF05913 DUF871: Bacterial pro 26.4 1.4E+02 0.003 32.1 6.0 38 207-252 83-120 (357)
149 cd00465 URO-D_CIMS_like The UR 26.4 1.4E+02 0.0031 30.6 6.1 51 64-138 151-206 (306)
150 PRK09441 cytoplasmic alpha-amy 25.8 1.3E+02 0.0028 33.4 6.0 16 119-134 82-97 (479)
151 cd06523 GH25_PlyB-like PlyB is 25.3 1.2E+02 0.0026 28.9 4.9 65 46-141 60-125 (177)
152 cd08210 RLP_RrRLP Ribulose bis 24.8 1.6E+02 0.0034 31.7 6.2 51 201-251 142-199 (364)
153 PRK14582 pgaB outer membrane N 24.7 8.2E+02 0.018 28.7 12.2 133 51-221 328-466 (671)
154 PTZ00170 D-ribulose-5-phosphat 24.6 6.6E+02 0.014 24.9 10.3 44 206-253 81-124 (228)
155 PRK10605 N-ethylmaleimide redu 24.6 70 0.0015 34.3 3.5 82 48-140 147-234 (362)
156 cd04747 OYE_like_5_FMN Old yel 24.5 1.3E+02 0.0028 32.4 5.4 82 48-140 132-220 (361)
157 cd08605 GDPD_GDE5_like_1_plant 24.4 1.1E+02 0.0024 31.2 4.8 17 206-222 266-282 (282)
158 PRK08255 salicylyl-CoA 5-hydro 24.3 3.5E+02 0.0076 32.1 9.5 75 48-140 539-627 (765)
159 PRK05593 rplR 50S ribosomal pr 24.0 1.4E+02 0.0031 26.7 4.7 52 50-134 66-117 (117)
160 PRK09250 fructose-bisphosphate 23.9 5.9E+02 0.013 27.3 10.0 52 201-252 218-290 (348)
161 COG2200 Rtn c-di-GMP phosphodi 23.5 1.5E+02 0.0032 30.0 5.4 46 206-251 164-214 (256)
162 cd08213 RuBisCO_large_III Ribu 23.2 1.4E+02 0.0031 32.7 5.5 50 202-251 149-205 (412)
163 PRK09549 mtnW 2,3-diketo-5-met 23.0 1.6E+02 0.0035 32.2 5.8 51 202-252 152-209 (407)
164 cd08212 RuBisCO_large_I Ribulo 22.8 1.5E+02 0.0033 32.8 5.6 51 201-251 162-219 (450)
165 COG0407 HemE Uroporphyrinogen- 22.7 2.4E+02 0.0053 30.2 7.0 51 64-137 196-247 (352)
166 cd02872 GH18_chitolectin_chito 22.5 1.5E+02 0.0033 31.4 5.5 53 199-251 98-159 (362)
167 KOG2672 Lipoate synthase [Coen 22.5 1.2E+02 0.0026 31.4 4.3 31 190-226 138-168 (360)
168 PHA02119 hypothetical protein 22.3 81 0.0018 25.5 2.5 26 104-133 44-69 (87)
169 cd08206 RuBisCO_large_I_II_III 22.2 1.7E+02 0.0037 32.2 5.8 51 202-252 150-207 (414)
170 cd06523 GH25_PlyB-like PlyB is 21.8 6.8E+02 0.015 23.6 10.3 20 119-138 40-59 (177)
171 COG0366 AmyA Glycosidases [Car 21.7 1.4E+02 0.0031 32.7 5.3 76 108-217 8-94 (505)
172 smart00636 Glyco_18 Glycosyl h 21.4 2.4E+02 0.0052 29.4 6.7 54 199-252 93-155 (334)
173 PF00834 Ribul_P_3_epim: Ribul 21.4 1.3E+02 0.0029 29.4 4.4 26 119-144 93-118 (201)
174 PRK04208 rbcL ribulose bisopho 21.3 1.9E+02 0.004 32.4 5.9 50 202-251 178-234 (468)
175 COG2099 CobK Precorrin-6x redu 21.3 2.4E+02 0.0053 28.8 6.2 63 189-251 69-136 (257)
176 cd08208 RLP_Photo Ribulose bis 21.2 1.5E+02 0.0033 32.6 5.2 50 202-251 178-234 (424)
177 TIGR03586 PseI pseudaminic aci 21.0 3.5E+02 0.0076 28.7 7.7 38 207-250 104-141 (327)
178 cd08575 GDPD_GDE4_like Glycero 20.8 1.7E+02 0.0036 29.7 5.2 18 121-138 221-238 (264)
179 cd02876 GH18_SI-CLP Stabilin-1 20.5 2E+02 0.0043 30.0 5.9 56 196-251 90-155 (318)
180 cd06413 GH25_muramidase_1 Unch 20.5 71 0.0015 30.7 2.3 23 120-142 112-135 (191)
181 KOG0410 Predicted GTP binding 20.5 58 0.0012 34.6 1.7 34 189-222 263-297 (410)
182 TIGR01463 mtaA_cmuA methyltran 20.4 2E+02 0.0044 30.2 5.9 52 64-139 187-241 (340)
183 PRK07534 methionine synthase I 20.1 2.9E+02 0.0063 29.4 7.0 55 193-251 124-178 (336)
184 cd06544 GH18_narbonin Narbonin 20.1 3.4E+02 0.0075 27.5 7.3 44 199-243 99-146 (253)
No 1
>PLN02899 alpha-galactosidase
Probab=100.00 E-value=5.3e-115 Score=935.99 Aligned_cols=550 Identities=75% Similarity=1.275 Sum_probs=492.5
Q ss_pred ccccccCCCCCCCCceEeccccccCcCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCC
Q 008142 23 SSISEAVPVRASSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWG 102 (576)
Q Consensus 23 ~~~~~~~~~~~~~pPmGWnSW~~~~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G 102 (576)
....+++++++++||||||||+.|.+.|+|++|+++||+|+++|+++||+||+|||||+...+.|.|.++.|++.||++|
T Consensus 18 ~~~~~~~~glA~TPPMGWNSWn~f~~~I~E~~i~~~Ad~vs~GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~G 97 (633)
T PLN02899 18 WIGASSQQQLASFPPRGWNSYDSFSWIVSEEEFLQNAEIVSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWG 97 (633)
T ss_pred hccccccCcccCCCCCCCcchhhhccCCCHHHHHHHHHHHHcchHhhCCeEEEEccccccccccccccccccccccCCCC
Confidence 34577889999999999999999999999999999999999999999999999999999876668899999999999999
Q ss_pred CceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccc
Q 008142 103 RMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACA 182 (576)
Q Consensus 103 ~~~~d~~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~ 182 (576)
+++|||+|||++++++|||+||||||+||||||||.++|+.+||++.++||+++.+|+.|+++|+.|+++||..+..+|.
T Consensus 98 rLvPDp~RFPSs~~g~GmK~LADYVHskGLKFGIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DIa~~~~tC~ 177 (633)
T PLN02899 98 RPIPDPGRWPSSRGGKGFTEVAEKVHAMGLKFGIHVMRGISTQAVNANTPILDAVKGGAYEESGRQWRAKDIALKERACA 177 (633)
T ss_pred CCccCcccCCCCccCCCcHHHHHHHHhCCcceEEEecCCCcccccccCCccccccccccccccccccchhhccccccccc
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred cCCCCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCCeEEEcCCCCCCCchhhh
Q 008142 183 WMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSPGTGVTPAMAK 262 (576)
Q Consensus 183 ~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~i~lsls~~~~~~p~~a~ 262 (576)
|++.+++.+|.++|++++|+++++++||+|||||||+|+|+++.+++++|++|++||+++||||+||+|++...+|.|+.
T Consensus 178 w~~~g~~~vDa~~~~g~a~~~Sla~tfAsWGVDyLKyD~c~~~~~~~~ey~~ms~AL~aTGRPIvySLspG~~~~p~wa~ 257 (633)
T PLN02899 178 WMSHGFMSVNTKLGAGKAFLRSLYDQYAEWGVDFVKHDCVFGDDFDLEEITYVSEVLKELDRPIVYSLSPGTSATPTMAK 257 (633)
T ss_pred cCCCCcccccccccchhhhhHHHHHHHHHhCCCEEEEcCCCCCCCChHHHHHHHHHHHHhCCCeEEEecCCcccchhhhh
Confidence 99999999999999999999999999999999999999998877788899999999999999999999998777788888
Q ss_pred hhcccccEEEEecCCCCChhhHHHHhhhhhhhhhhhhhcccCCCCCCcCCCCCCcCCccCCCCCCCCCCCCCCCCHHHHH
Q 008142 263 EVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQR 342 (576)
Q Consensus 263 ~~~~~~n~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDmL~~g~~~~~~~~~g~~~~~~lT~~E~r 342 (576)
.+.+++|||||++|+++.|.++..+++..+.|+.+..+++++++|++|||||||+||.+++++.|.|+||.++||.+|+|
T Consensus 258 ~v~~~aNmWRitgDI~D~W~sV~~~~d~~~~~~~~~~~g~~G~~gg~WNDpDML~VG~lg~~~~n~G~~r~~~LT~dE~r 337 (633)
T PLN02899 258 EVSGLVNMYRITGDDWDTWGDVAAHFDVSRDFAAAGLIGAKGLRGRSWPDLDMLPLGWLTDPGSNVGPHRACNLTLDEQK 337 (633)
T ss_pred hhhccCccceecCCcccchHHHHHHHHHHHHHhhccccccCCCCCCCCCCcceecccCCCccccccCccccCCCCHHHHH
Confidence 88889999999999999999999999988888766666667777789999999999999998888899999999999999
Q ss_pred HHHHHHHHhcCCeeeccCCCCCCHhHHhccCChhhhhhccCCCCCCccceeecccCCCCCccccCCCcccccccccceec
Q 008142 343 TQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFPYIIGTKGNTRKIKVTPPHLSEVAESNTHVLG 422 (576)
Q Consensus 343 t~~slwa~~~sPLi~g~Dl~~~~~~~l~lltN~eliainqd~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~lG 422 (576)
||||||||++||||+|.||++|++++++||+|+||||||||+.+++++.++.+.+.......-+ .. ....+-+-..||
T Consensus 338 ThfSLWAm~aSPLiiG~DLr~md~~tl~ILTNkeVIAINQds~~n~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~ 415 (633)
T PLN02899 338 TQMTLWAMAKSPLMYGGDLRKLDQATYSLITNPTLLEINSHSSNNMEFPYVTSTRRNKKKSHSQ-HS-TGVGKSDPSVLG 415 (633)
T ss_pred HHHHHHHHHhCchhhcCCcccCCHHHHHHhcCHHHeEEccCccCCeeeeeEecccccccccccc-cc-ccCCCCCcceEE
Confidence 9999999999999999999999999999999999999999999999999998866211100000 00 222334567899
Q ss_pred ccCCCCCccccccccccccccceEEEeccCCCCCCCccccccCCCcCCCCceeecCCCCCceEEEeeccCCCceeecCCC
Q 008142 423 LTSCKDPKANSWSIQAHDQELEEICWKGKSGNKIGEPLCLYKSRALLSSDGEMIYKQQYQGKVHLLASKGVGVCLDASPK 502 (576)
Q Consensus 423 L~~~s~~~~dlWs~~~~~~~~g~i~~~~~~~~~~~~~~Cldv~~~~ta~~~w~c~g~~~Q~w~~~~~~~~~g~CLd~~~~ 502 (576)
|++|+.+.+..|+..++.+..++|||+.+...+...++||..+....+.+.+.-..+..|...|+.+......|||+.+.
T Consensus 416 l~~c~~~~~~~w~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 495 (633)
T PLN02899 416 LTSCKDSKANGWSIRSLDKDLDQICWNEKMGRRGEEPLCLYKTKPLLASDEEIIHNSEYQGKLHLLTSDGGELCLDASPK 495 (633)
T ss_pred EEecCCCCCCceeEEecCCCcceeeccccccccCCCCeeeecccCCcccchhhhhcccccceEEeeeccccChhhccCCC
Confidence 99999999999999998888999999999999999999999988877775566667788999998777777899999877
Q ss_pred CccCCCCceeeEEeccCCCCCCceEECcCCcEEeCCCCceEEeCCCCccCCCCcEEEEecCCcCcceehhhh
Q 008142 503 WKLTSKELRRGSFSKCKRDANQMWQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATGREGISLMLYL 574 (576)
Q Consensus 503 ~~~~~G~~~~v~~w~C~g~~~Q~W~~~~~G~l~n~~sg~Cldv~~~~t~~~G~~v~~w~c~g~~~q~~~~~~ 574 (576)
...+.++.+.-.+..|...++|.|+|+++|+|+|.+||+|..|......+....|+.|..+|..+|+|++|.
T Consensus 496 ~~~~~~~~~~~~fs~c~~~~~q~w~l~~~g~l~~~~sglca~v~~~~~~~~~~~~r~w~a~g~~g~~y~~~f 567 (633)
T PLN02899 496 QKRTSKDFRSGSFSPCRWDANQMWELNNNGTLISSYSGLCATVNSVVAEVATGGVRSWIATGRKGEIYVAFF 567 (633)
T ss_pred CCcCHhHhhccccCCCCCChhhceeeCCCCCEecCccccceEeeccccccccCceeEEEEcCCCccEEEEEE
Confidence 665566543456788999999999999999999999999999975543323456799999999999999975
No 2
>PLN03231 putative alpha-galactosidase; Provisional
Probab=100.00 E-value=6e-89 Score=707.58 Aligned_cols=351 Identities=60% Similarity=1.128 Sum_probs=306.9
Q ss_pred CceEeccccccCcCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccc---cCCCccccCCCCCceeCCCCCC
Q 008142 36 PPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYV---DSLGFDVIDEWGRMIPDPDRWP 112 (576)
Q Consensus 36 pPmGWnSW~~~~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~---~~~~~~~~d~~G~~~~d~~kFP 112 (576)
||||||||+.|.|+|||++|+++||+|+++|+++||+||+|||||+...+.|-+. .+.+...||++|+++||++|||
T Consensus 1 PpMGWNSWn~f~~~i~E~~i~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFP 80 (357)
T PLN03231 1 PPRGWNSYDSFSFTISEEQFLENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWP 80 (357)
T ss_pred CCCCccchhccCcCcCHHHHHHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCC
Confidence 8999999999999999999999999889999999999999999999754322111 1123345899999999999999
Q ss_pred CCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeec
Q 008142 113 SSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVN 192 (576)
Q Consensus 113 ~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~~~lD 192 (576)
++++++|||+||||||+||||||||.++|+.+|++..++||+|... ..|++++++||......|.|+++.|+.||
T Consensus 81 s~~~~~G~k~lADyvHs~GLKfGIY~~~G~~tca~~~~~pi~G~~G-----s~g~~~~a~Dia~~~~~c~~~~~~~~~v~ 155 (357)
T PLN03231 81 STTGGKGFAPIAAKVHALGLKLGIHVMRGISTTAVKKKTPILGAFK-----SNGHAWNAKDIALMDQACPWMQQCFVGVN 155 (357)
T ss_pred CCccccCcHHHHHHHHhCCcceEEEecCCccchhcccCCccCCCCc-----ccccccchhhhcccccccccccccccccc
Confidence 9999999999999999999999999999999999988899885421 11566788999998889999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCC-CChHHHHHHHHHHHhCCCCeEEEcCCCCCCCchhhhhhcccccEE
Q 008142 193 TKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDD-LDINEISFVSEVLKELDRPIVYSLSPGTGVTPAMAKEVSGLVNMY 271 (576)
Q Consensus 193 ~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~-~~~~~y~~m~~al~~~gr~i~lsls~~~~~~p~~a~~~~~~~n~~ 271 (576)
.+||++++|+++++++|++|||||||+|+|+... ...++|.+|++||+++||||+||||++...+|.|+..+.+++|||
T Consensus 156 ~~~~gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~tGRpIv~Slc~g~~~~~~~~~~i~~~an~W 235 (357)
T PLN03231 156 TSSEGGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRNSGRPMIYSLSPGDGATPGLAARVAQLVNMY 235 (357)
T ss_pred ccchhHHHHHHHHHHHHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHHhCCCeEEEecCCCCCCchhhhhhhhhcCcc
Confidence 9999999999999999999999999999998643 567899999999999999999999997666677887778899999
Q ss_pred EEecCCCCChhhHHHHhhhhhhhhhhhhhcccCC-CCCCcCCCCCCcCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 008142 272 RITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGL-QGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAM 350 (576)
Q Consensus 272 Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~-~~~~wnDpDmL~~g~~~~~~~~~g~~~~~~lT~~E~rt~~slwa~ 350 (576)
||++||++.|.++..+++..+.|+......+++. +|++|||||||+||.+++++...|++|.++||.+|+|||||||||
T Consensus 236 R~s~DI~d~W~~v~~~~~~~~~~~~~~~~~~~~~agpG~WnD~DML~vG~~g~~~~~~g~~~~~glT~~E~rthfslWam 315 (357)
T PLN03231 236 RVTGDDWDDWKYLVKHFDVARDFAAAGLIAIPSVVGGKSWVDLDMLPFGRLTDPAAAYGPYRNSRLSLEEKKTQMTLWAV 315 (357)
T ss_pred cccCCcccchhhHHHHHHHHHHHhhhcccccccCCCCCCCCCccchhcCCCCCCcccccccccCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988877765433333222 468999999999998766543346667789999999999999999
Q ss_pred hcCCeeeccCCCCCCHhHHhccCChhhhhhccCCCCCCccc
Q 008142 351 AKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFP 391 (576)
Q Consensus 351 ~~sPLi~g~Dl~~~~~~~l~lltN~eliainqd~~~~~~~~ 391 (576)
++||||+|.||++|++++++||||+||||||||++++++++
T Consensus 316 ~~SPLiiG~DL~~~~~~tl~iLtN~evIAINQD~lG~~~~~ 356 (357)
T PLN03231 316 AKSPLMFGGDLRRLDNETLSLLTNPTVLEVNSHSTGNRNAQ 356 (357)
T ss_pred HhCchhhcCCcccCCHHHHHHhcChHHheecCCccccccCC
Confidence 99999999999999999999999999999999999998764
No 3
>PLN02229 alpha-galactosidase
Probab=100.00 E-value=1.9e-81 Score=662.08 Aligned_cols=333 Identities=26% Similarity=0.421 Sum_probs=285.9
Q ss_pred CCCCCCCCceEeccccccCcCCCHHHHHHHHHH-HHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeC
Q 008142 29 VPVRASSPPRGWNSYDSFCWTISEEEFLQSAEI-ISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPD 107 (576)
Q Consensus 29 ~~~~~~~pPmGWnSW~~~~~~ise~~i~~~ad~-~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d 107 (576)
+++++++||||||||+.|+++|+|+.|+++||. +++||+++||+||+|||||+... ||+.|+++||
T Consensus 56 ~ngla~tPpmGWnSWn~~~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~-------------rd~~G~l~~d 122 (427)
T PLN02229 56 NNGLARTPQMGWNSWNFFACNINETVIKETADALVSTGLADLGYIHVNIDDCWSNLK-------------RDSKGQLVPD 122 (427)
T ss_pred cCCccCCCCceEEchhhhCcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCC-------------cCCCCCEEEC
Confidence 578999999999999999999999999999996 58999999999999999999743 5789999999
Q ss_pred CCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCC
Q 008142 108 PDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHG 187 (576)
Q Consensus 108 ~~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~ 187 (576)
++|||+ |||+|++|||++|||||||.++|+.+|+.+|++
T Consensus 123 ~~rFP~-----G~k~ladyiH~~GlKfGIy~d~G~~TC~~~pGS------------------------------------ 161 (427)
T PLN02229 123 PKTFPS-----GIKLLADYVHSKGLKLGIYSDAGVFTCQVRPGS------------------------------------ 161 (427)
T ss_pred hhhcCC-----cHHHHHHHHHHCCCceEEeccCCCcccCCCCCC------------------------------------
Confidence 999998 999999999999999999999999988754432
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCCCC-hHHHHHHHHHHHhCCCCeEEEcCCCCCCCc-hhhhhhc
Q 008142 188 FMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLD-INEISFVSEVLKELDRPIVYSLSPGTGVTP-AMAKEVS 265 (576)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~-~~~y~~m~~al~~~gr~i~lsls~~~~~~p-~~a~~~~ 265 (576)
..|.+.++++|++|||||||+|+|+....+ .++|.+|++||+++||||+||+|++....| .|+ .
T Consensus 162 -----------~g~e~~DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~WG~~~p~~w~---~ 227 (427)
T PLN02229 162 -----------LFHEVDDADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATGRSIFYSLCEWGVDDPALWA---G 227 (427)
T ss_pred -----------ccHHHHHHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhCCCcEEEecCCCCCCHHHHH---H
Confidence 245677789999999999999999875543 467999999999999999999998655555 243 4
Q ss_pred ccccEEEEecCCCCChhhHHHHhhhhhhhhhhhhhcccCCCCCCcCCCCCCcCCccCCCCCCCCCCCCCCCCHHHHHHHH
Q 008142 266 GLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQM 345 (576)
Q Consensus 266 ~~~n~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDmL~~g~~~~~~~~~g~~~~~~lT~~E~rt~~ 345 (576)
+++||||+++||++.|.++.++++....|+. +. +|++|||||||+||+ .+||.+|+||||
T Consensus 228 ~~~n~WR~s~DI~d~W~sv~~i~~~~~~~~~-----~a--gPG~wnDpDML~vGn-------------~glT~~E~rthf 287 (427)
T PLN02229 228 KVGNSWRTTDDINDTWASMTTIADLNNKWAA-----YA--GPGGWNDPDMLEVGN-------------GGMTYEEYRGHF 287 (427)
T ss_pred hhcCeeeccCCcccccccHHHHHHHHHHHHh-----hc--CCCCCCCCCeeeeCC-------------CCCCHHHHHHHH
Confidence 6899999999999999999999987777754 23 358999999999995 369999999999
Q ss_pred HHHHHhcCCeeeccCCCCCCHhHHhccCChhhhhhccCCCCCCccceeeccc----------C-CCCCcc----ccCCCc
Q 008142 346 TLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFPYIIGTK----------G-NTRKIK----VTPPHL 410 (576)
Q Consensus 346 slwa~~~sPLi~g~Dl~~~~~~~l~lltN~eliainqd~~~~~~~~~~~~~~----------~-~~~~~~----N~~~~~ 410 (576)
|||||++||||+|+||+++++++++||||+||||||||+++.+. +.+.... . .+++.+ |+++.
T Consensus 288 sLWai~~SPLiiG~DL~~m~~~tl~ILtNkEVIAINQD~lG~qg-~~v~~~~~~~~~~vW~~~L~~g~~aValfN~~~~- 365 (427)
T PLN02229 288 SIWALMKAPLLIGCDVRNMTAETMEILSNKEVIAVNQDPLGVQG-RKIQANGKNGCQQVWAGPLSGDRLVVALWNRCSE- 365 (427)
T ss_pred HHHHHHhCceeecCCcccCCHHHHHHhcCHHHHhhcccccccCc-EEEEecCCCCceEEEEEECCCCCEEEEEEeCCCC-
Confidence 99999999999999999999999999999999999999887443 4454321 1 233433 99988
Q ss_pred ccccccccceecccCC-CCCcccccccccccc-ccceEEEecc
Q 008142 411 SEVAESNTHVLGLTSC-KDPKANSWSIQAHDQ-ELEEICWKGK 451 (576)
Q Consensus 411 ~~~~~~~~~~lGL~~~-s~~~~dlWs~~~~~~-~~g~i~~~~~ 451 (576)
+++++++++.|||... .+.++|||++++++. ..++++++++
T Consensus 366 ~~~v~v~~~~lGl~~~~~~~VrDLW~~~dlg~~~~~~~~~~v~ 408 (427)
T PLN02229 366 PATITASWDVIGLESSISVSVRDLWKHKDLSENVVGSFGAQVD 408 (427)
T ss_pred CEEEEEEHHHcCCCCCCceEEEECCCCCccCccccceEEEEEC
Confidence 9999999999999865 478999999998753 4577777764
No 4
>PLN02808 alpha-galactosidase
Probab=100.00 E-value=5.8e-81 Score=654.82 Aligned_cols=341 Identities=25% Similarity=0.415 Sum_probs=295.0
Q ss_pred cccccccCCCCCCCCceEeccccccCcCCCHHHHHHHHHHH-HHhhccCCceEEEecccccccccCCccccCCCccccCC
Q 008142 22 VSSISEAVPVRASSPPRGWNSYDSFCWTISEEEFLQSAEII-SQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDE 100 (576)
Q Consensus 22 ~~~~~~~~~~~~~~pPmGWnSW~~~~~~ise~~i~~~ad~~-~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~ 100 (576)
-......+++++++||||||||+.|+++|+|++|+++||.| +.||+++||+||+|||||+... ||+
T Consensus 18 ~~~~~~~~ngla~tPpmGWnsW~~~~~~i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~-------------rd~ 84 (386)
T PLN02808 18 FISRNLLDNGLGLTPQMGWNSWNHFQCNINETLIKQTADAMVSSGLAALGYKYINLDDCWAELK-------------RDS 84 (386)
T ss_pred hhhhhcccCcccCCCcceEEchHHHCCCCCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCC-------------cCC
Confidence 34445568899999999999999999999999999999987 7899999999999999999753 578
Q ss_pred CCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccc
Q 008142 101 WGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERA 180 (576)
Q Consensus 101 ~G~~~~d~~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~ 180 (576)
+|+|+||++|||+ |||+|++|||++|||||||.++|..+|+.
T Consensus 85 ~G~~~~d~~rFP~-----G~~~lad~iH~~GlkfGiy~~~G~~tC~~--------------------------------- 126 (386)
T PLN02808 85 QGNLVPKASTFPS-----GIKALADYVHSKGLKLGIYSDAGTLTCSK--------------------------------- 126 (386)
T ss_pred CCCEeeChhhcCc-----cHHHHHHHHHHCCCceEEEecCCccccCC---------------------------------
Confidence 8999999999998 99999999999999999999999877742
Q ss_pred cccCCCCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCCCC-hHHHHHHHHHHHhCCCCeEEEcCCCCCCCc-
Q 008142 181 CAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLD-INEISFVSEVLKELDRPIVYSLSPGTGVTP- 258 (576)
Q Consensus 181 ~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~-~~~y~~m~~al~~~gr~i~lsls~~~~~~p- 258 (576)
.+||++.|++.++++|++|||||||+|+|+.+..+ .++|.+|++||+++||||+||+|++....|
T Consensus 127 -------------~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpi~~slc~wg~~~p~ 193 (386)
T PLN02808 127 -------------TMPGSLGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNSGRPIFFSLCEWGQEDPA 193 (386)
T ss_pred -------------CCCcchHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHhCCCeEEEecCCCCCCHH
Confidence 13667889999999999999999999999865443 468999999999999999999998554445
Q ss_pred hhhhhhcccccEEEEecCCCCChhhHHHHhhhhhhhhhhhhhcccCCCCCCcCCCCCCcCCccCCCCCCCCCCCCCCCCH
Q 008142 259 AMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNL 338 (576)
Q Consensus 259 ~~a~~~~~~~n~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDmL~~g~~~~~~~~~g~~~~~~lT~ 338 (576)
.|+ .+++|+||++.||++.|.++.++++....|+. +. +|++|||||||+||. .+||.
T Consensus 194 ~w~---~~~~n~WR~s~Di~d~W~~v~~~~~~~~~~~~-----~a--gPG~wnDpDML~vGn-------------~glt~ 250 (386)
T PLN02808 194 TWA---GDIGNSWRTTGDIQDNWDSMTSRADQNDRWAS-----YA--RPGGWNDPDMLEVGN-------------GGMTT 250 (386)
T ss_pred HHH---HhhcCcccccCCcccchhhHHHHHHhhhhhHh-----hc--CCCCCCCCCeeeECC-------------CCCCH
Confidence 555 46799999999999999999999987766654 23 358999999999995 37999
Q ss_pred HHHHHHHHHHHHhcCCeeeccCCCCCCHhHHhccCChhhhhhccCCCCCCccceeecccC--------CCCCcc----cc
Q 008142 339 DEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFPYIIGTKG--------NTRKIK----VT 406 (576)
Q Consensus 339 ~E~rt~~slwa~~~sPLi~g~Dl~~~~~~~l~lltN~eliainqd~~~~~~~~~~~~~~~--------~~~~~~----N~ 406 (576)
+|+|||||||||++||||+|+||++|++++++||+|+||||||||+++.+ .+.|..... .+++.+ |+
T Consensus 251 ~E~rthfsLWam~~SPLiiG~DL~~~~~~~l~iLtNkevIAINQD~lG~~-~~~v~~~~~~~vW~k~L~~g~~aVal~N~ 329 (386)
T PLN02808 251 EEYRSHFSIWALAKAPLLIGCDIRSMDNETFELLSNKEVIAVNQDKLGVQ-GKKVKKDGDLEVWAGPLSKKRVAVVLWNR 329 (386)
T ss_pred HHHHHHHHHHHHHhCcceecCCcCcCCHHHHHHhcCHHHHhhcCCccccC-cEEEEecCCeEEEEEECCCCCEEEEEEEC
Confidence 99999999999999999999999999999999999999999999988744 455654221 355544 99
Q ss_pred CCCcccccccccceecccCC-CCCccccccccccccccceEEEecc
Q 008142 407 PPHLSEVAESNTHVLGLTSC-KDPKANSWSIQAHDQELEEICWKGK 451 (576)
Q Consensus 407 ~~~~~~~~~~~~~~lGL~~~-s~~~~dlWs~~~~~~~~g~i~~~~~ 451 (576)
+++ +++++++++.|||... .++++|+|+++.++...++++++++
T Consensus 330 ~~~-~~~~~~~~~~lgl~~~~~~~vrDlWs~~~~g~~~~~~~~~v~ 374 (386)
T PLN02808 330 GSS-RATITARWSDIGLNSSAVVNARDLWAHSTQSSVKGQLSALVE 374 (386)
T ss_pred CCC-CEEEEEEHHHhCCCCCCceEEEECCCCCccCcccceEEEEEC
Confidence 998 9999999999999853 5799999999988777788888764
No 5
>PLN02692 alpha-galactosidase
Probab=100.00 E-value=9.6e-81 Score=654.18 Aligned_cols=335 Identities=25% Similarity=0.427 Sum_probs=289.1
Q ss_pred cCCCCCCCCceEeccccccCcCCCHHHHHHHHHHH-HHhhccCCceEEEecccccccccCCccccCCCccccCCCCCcee
Q 008142 28 AVPVRASSPPRGWNSYDSFCWTISEEEFLQSAEII-SQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIP 106 (576)
Q Consensus 28 ~~~~~~~~pPmGWnSW~~~~~~ise~~i~~~ad~~-~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~ 106 (576)
.+++++++||||||||+.|+++|+|+.++++||.| +.+|+++||+||+|||||+... +|+.|+|+|
T Consensus 48 ~~ngla~tPpmGWnSW~~~~~~i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~-------------rd~~G~~~~ 114 (412)
T PLN02692 48 LANGLGITPPMGWNSWNHFSCKIDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIA-------------RDEKGNLVP 114 (412)
T ss_pred ccCcCcCCCcceEEchhhhCcccCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCC-------------CCCCCCeee
Confidence 36799999999999999999999999999999965 7899999999999999999753 578899999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCC
Q 008142 107 DPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQH 186 (576)
Q Consensus 107 d~~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~ 186 (576)
|++|||+ |||+||+|||+||||||||.++|..+|+.
T Consensus 115 d~~kFP~-----G~k~ladyiH~~GLKfGIy~d~G~~tC~~--------------------------------------- 150 (412)
T PLN02692 115 KKSTFPS-----GIKALADYVHSKGLKLGIYSDAGYFTCSK--------------------------------------- 150 (412)
T ss_pred ChhhcCC-----cHHHHHHHHHHCCCceEEEecCCccccCC---------------------------------------
Confidence 9999998 99999999999999999999999877742
Q ss_pred CceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCCCC-hHHHHHHHHHHHhCCCCeEEEcCCCCCCCc-hhhhhh
Q 008142 187 GFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLD-INEISFVSEVLKELDRPIVYSLSPGTGVTP-AMAKEV 264 (576)
Q Consensus 187 ~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~-~~~y~~m~~al~~~gr~i~lsls~~~~~~p-~~a~~~ 264 (576)
.+||.+.|++.++++|++|||||||+|+|+.+... .++|.+|++||+++||||+||+|++....| .|+
T Consensus 151 -------~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~wg~~~p~~w~--- 220 (412)
T PLN02692 151 -------TMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDGSKPTVRYPVMTRALMKAGRPIFFSLCEWGDMHPALWG--- 220 (412)
T ss_pred -------CCCCchHHHHHHHHHHHhcCCCEEeccccCCCCcchhHHHHHHHHHHHHhCCCeEEEecCCCcCChhhhh---
Confidence 13667889999999999999999999999865444 378999999999999999999998665445 344
Q ss_pred cccccEEEEecCCCCChhhHHHHhhhhhhhhhhhhhcccCCCCCCcCCCCCCcCCccCCCCCCCCCCCCCCCCHHHHHHH
Q 008142 265 SGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQ 344 (576)
Q Consensus 265 ~~~~n~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDmL~~g~~~~~~~~~g~~~~~~lT~~E~rt~ 344 (576)
.+++|+|||+.|+++.|.++..+++....|+. +. +|++|||||||+||. .+||.+|+|||
T Consensus 221 ~~~~n~WR~s~DI~d~W~sv~~~~~~~~~~~~-----~a--gPG~wnDpDML~VGn-------------~glT~~E~rTh 280 (412)
T PLN02692 221 SKVGNSWRTTNDISDTWDSMISRADMNEVYAE-----LA--RPGGWNDPDMLEVGN-------------GGMTKDEYIVH 280 (412)
T ss_pred hhcCCccccccccccchHhHHHHHHHHHHHhh-----cc--CCCCCCCCCeEeECC-------------CCCCHHHHHHH
Confidence 46899999999999999999999887666643 23 458999999999995 37999999999
Q ss_pred HHHHHHhcCCeeeccCCCCCCHhHHhccCChhhhhhccCCCCCCccceeecccC--------CCCCcc----ccCCCccc
Q 008142 345 MTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFPYIIGTKG--------NTRKIK----VTPPHLSE 412 (576)
Q Consensus 345 ~slwa~~~sPLi~g~Dl~~~~~~~l~lltN~eliainqd~~~~~~~~~~~~~~~--------~~~~~~----N~~~~~~~ 412 (576)
||||||++||||+|+||+++++++++||+|+||||||||+++.+. +.+..... .+++.+ |+++. ++
T Consensus 281 fsLWai~~SPLiiG~DL~~~~~~~l~iLtN~evIAiNQD~lG~q~-~~v~~~~~~~vW~k~l~~g~~aVal~N~~~~-~~ 358 (412)
T PLN02692 281 FSIWAISKAPLLLGCDVRNMTKETMDIVANKEVIAVNQDPLGVQA-KKVRMEGDLEIWAGPLSGYRVALLLLNRGPW-RN 358 (412)
T ss_pred HHHHHHHhCcceecCCcccCCHHHHHHhcCHHHhhhccCccccCc-EEEEecCCeEEEEEECCCCCEEEEEEECCCC-CE
Confidence 999999999999999999999999999999999999999988544 55543211 244434 99988 89
Q ss_pred ccccccceecccCC-CCCcccccccccccc-ccceEEEecc
Q 008142 413 VAESNTHVLGLTSC-KDPKANSWSIQAHDQ-ELEEICWKGK 451 (576)
Q Consensus 413 ~~~~~~~~lGL~~~-s~~~~dlWs~~~~~~-~~g~i~~~~~ 451 (576)
+++++++.|||... .++++|||+++.++. ..+.++++++
T Consensus 359 ~i~~~~~~lgl~~~~~~~vrDLW~~~~~g~~~~~~~~~~v~ 399 (412)
T PLN02692 359 SITANWDDIGIPANSIVEARDLWEHKTLKQHFVGNLTATVD 399 (412)
T ss_pred EEEEeHHHhCCCCCCceEEEECCCCCccCccccceEEEEEC
Confidence 99999999999864 578999999998763 4677887764
No 6
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.8e-67 Score=528.72 Aligned_cols=349 Identities=28% Similarity=0.442 Sum_probs=284.2
Q ss_pred hcccccccCCCCCCCCceEeccccccCcCCC----------HHHHHHHHHHH-HHhhccCCceEEEecccccccccCCcc
Q 008142 21 RVSSISEAVPVRASSPPRGWNSYDSFCWTIS----------EEEFLQSAEII-SQRLRPHGYEYVVVDYLWYRRKVKGAY 89 (576)
Q Consensus 21 ~~~~~~~~~~~~~~~pPmGWnSW~~~~~~is----------e~~i~~~ad~~-~~gl~~~Gy~yv~iDdgW~~~~~~g~~ 89 (576)
.+...-..+++++.+|||||+||+.|.|+++ |..++++||.| ++|+++.||+||+|||||....
T Consensus 18 ~~~~~~~l~NGLg~tP~MGw~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvseG~~~vGY~yi~iDDCW~e~~----- 92 (414)
T KOG2366|consen 18 SVKGRMSLNNGLGRTPQMGWNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVSEGLADVGYEYINIDDCWSEVT----- 92 (414)
T ss_pred hhhhheeeccccccCCCcccccccceeeecccccCCccchhHHHHHHHHHHHHHhHHHhcCcEEEechhhhhhhc-----
Confidence 3334556689999999999999999999877 99999999987 6899999999999999999864
Q ss_pred ccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCcc
Q 008142 90 VDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQW 169 (576)
Q Consensus 90 ~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~ 169 (576)
||..|+++++++|||+ |++.+++|+|++|||||||...|..+|+..|
T Consensus 93 --------Rd~~grLva~~~rFP~-----Gi~~ladyvHs~GLKlGiYsD~G~~TC~g~P-------------------- 139 (414)
T KOG2366|consen 93 --------RDSDGRLVADPSRFPS-----GIKALADYVHSKGLKLGIYSDAGNFTCAGYP-------------------- 139 (414)
T ss_pred --------cCCccccccChhhccc-----chhhhhhchhhcCCceeeeeccCchhhccCC--------------------
Confidence 5888999999999998 9999999999999999999999988886543
Q ss_pred ccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCCC-ChHHHHHHHHHHHhCCCCeEE
Q 008142 170 RAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDL-DINEISFVSEVLKELDRPIVY 248 (576)
Q Consensus 170 ~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~-~~~~y~~m~~al~~~gr~i~l 248 (576)
|...|++.++++|++|||||+|+|.|+.... .+++|..|+++|+++|||||+
T Consensus 140 ---------------------------GS~~~e~~DA~tFA~WgvDylKlD~C~~~~~~~~~~Yp~ms~aLN~tGrpi~y 192 (414)
T KOG2366|consen 140 ---------------------------GSLGHEESDAKTFADWGVDYLKLDGCFNNLITMPEGYPIMSRALNNTGRPIFY 192 (414)
T ss_pred ---------------------------cccchhhhhhhhhHhhCCcEEeccccccccccccccchhHHHHHhccCCceEE
Confidence 3345667778999999999999999987554 468999999999999999999
Q ss_pred EcCCCCC------CCchhhhhhcccccEEEEecCCCCChhhHHHHhhhhhhhhhhhhhcccCCCCCCcCCCCCCcCCccC
Q 008142 249 SLSPGTG------VTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLT 322 (576)
Q Consensus 249 sls~~~~------~~p~~a~~~~~~~n~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~wnDpDmL~~g~~~ 322 (576)
|+|.+.. ..|++ +.++.++|+||+.+|+.++|.++..+++. ..|....+....| |++|||||||++|+
T Consensus 193 SlC~W~~~~~~~~~~pny-~~i~~~~N~WR~~dDI~dtW~Sv~~I~d~-~~~nqd~~~~~ag--Pg~WNDpDmL~iGN-- 266 (414)
T KOG2366|consen 193 SLCSWPAYHPGLPHHPNY-KNISTICNSWRTTDDIQDTWKSVDSIIDY-ICWNQDRIAPLAG--PGGWNDPDMLEIGN-- 266 (414)
T ss_pred EeccCcccccCccCCCcc-hhhhhhhccccchhhhhhHHHHHHHHHHH-HhhhhhhhccccC--CCCCCChhHhhcCC--
Confidence 9774322 22333 34578999999999999999999988763 2332223334444 58999999999995
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeeeccCCCCCCHhHHhccCChhhhhhccCCCCCCccceee-cc-----
Q 008142 323 DPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFPYII-GT----- 396 (576)
Q Consensus 323 ~~~~~~g~~~~~~lT~~E~rt~~slwa~~~sPLi~g~Dl~~~~~~~l~lltN~eliainqd~~~~~~~~~~~-~~----- 396 (576)
.++|.+|+++||++||++++||++|.|++.++++.+++|+|||+|+||||+++-+..+.+. +.
T Consensus 267 -----------~G~s~e~y~~qf~lWai~kAPLlms~Dlr~is~~~~~il~nk~~IaiNQDplgiqGr~i~~e~~~ievw 335 (414)
T KOG2366|consen 267 -----------GGMSYEEYKGQFALWAILKAPLLMSNDLRLISKQTKEILQNKEVIAINQDPLGIQGRKIVLEGDSIEVW 335 (414)
T ss_pred -----------CCccHHHHHHHHHHHHHhhchhhhccchhhcCHHHHHHhcChhheeccCCccchhheeeeecCCceEEE
Confidence 4899999999999999999999999999999999999999999999999999876654441 21
Q ss_pred --cCCCCCcc----ccCCC-cccccc-cccceeccc-CCCCCccccccccc-cccccceEEEecc
Q 008142 397 --KGNTRKIK----VTPPH-LSEVAE-SNTHVLGLT-SCKDPKANSWSIQA-HDQELEEICWKGK 451 (576)
Q Consensus 397 --~~~~~~~~----N~~~~-~~~~~~-~~~~~lGL~-~~s~~~~dlWs~~~-~~~~~g~i~~~~~ 451 (576)
+.+...++ ||... ....++ +.+..+|+. ...++++|||++.. .....++|++.+.
T Consensus 336 ~~pls~~~~Ava~lNr~~~~~~~~It~~~l~~~g~~~~~~~~~~dLw~~~~~~~~~~~~i~~~V~ 400 (414)
T KOG2366|consen 336 SGPLSGKSVAVAFLNRRKTGIPARITAASLRELGLTNPASYTAHDLWSGVLGFLPTKDSISAQVN 400 (414)
T ss_pred eeccCCceEEEEEecccCCCCCccccHHHHhhcCCCCCceeEeeehhhccccccccCCeEEEEEC
Confidence 11222222 77632 166776 789999996 44689999999942 2235788888874
No 7
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=99.97 E-value=1.8e-31 Score=283.84 Aligned_cols=284 Identities=21% Similarity=0.383 Sum_probs=177.5
Q ss_pred CCCCCCCCceEeccccccCcCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCC
Q 008142 29 VPVRASSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDP 108 (576)
Q Consensus 29 ~~~~~~~pPmGWnSW~~~~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~ 108 (576)
.+...++||||||||+++++++||+.++++|+.+ +++||++|+|||||+.... +..+..|+|++|+
T Consensus 34 ~~~~~~~~pv~~nsW~~~~~d~~e~~i~~~a~~~----~~~G~e~fviDDGW~~~r~----------~d~~~~GdW~~~~ 99 (394)
T PF02065_consen 34 PPWRDKPPPVGWNSWEAYYFDITEEKILELADAA----AELGYEYFVIDDGWFGGRD----------DDNAGLGDWEPDP 99 (394)
T ss_dssp TTTTTSS--EEEESHHHHTTG--HHHHHHHHHHH----HHHT-SEEEE-SSSBCTES----------TTTSTTSBECBBT
T ss_pred CccCCCCCceEEEcccccCcCCCHHHHHHHHHHH----HHhCCEEEEEcCccccccC----------CCcccCCceeECh
Confidence 3455789999999999999999999999999975 6889999999999998631 1134679999999
Q ss_pred CCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCc
Q 008142 109 DRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGF 188 (576)
Q Consensus 109 ~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~ 188 (576)
+|||+ ||++|+++||++|||||||+.|+. +.++|+++.+ +++|..+.-... ... ....
T Consensus 100 ~kFP~-----Gl~~l~~~i~~~Gmk~GlW~ePe~----v~~~S~l~~~---------hPdw~l~~~~~~-~~~---~r~~ 157 (394)
T PF02065_consen 100 KKFPN-----GLKPLADYIHSLGMKFGLWFEPEM----VSPDSDLYRE---------HPDWVLRDPGRP-PTL---GRNQ 157 (394)
T ss_dssp TTSTT-----HHHHHHHHHHHTT-EEEEEEETTE----EESSSCHCCS---------SBGGBTCCTTSE--EC---BTTB
T ss_pred hhhCC-----cHHHHHHHHHHCCCeEEEEecccc----ccchhHHHHh---------CccceeecCCCC-CcC---cccc
Confidence 99998 999999999999999999999975 4567777654 345544421111 111 1235
Q ss_pred eeecCCcHHHHHHHHHHH-HHHHhhCccEEEecCCCC--C----CCC--hHHHH----HHHHHHHhCCCCeEEEcCCC--
Q 008142 189 MSVNTKLGAGRAFLRSLY-QQYAEWGVDFVKHDCVFG--D----DLD--INEIS----FVSEVLKELDRPIVYSLSPG-- 253 (576)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~-~~~a~wGvdylK~D~~~~--~----~~~--~~~y~----~m~~al~~~gr~i~lsls~~-- 253 (576)
+.||+++|++++|+...+ +.+++|||||||+||+.. . ..+ ..+|. .|.+.|.+.-.++++..|.+
T Consensus 158 ~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~CssGG 237 (394)
T PF02065_consen 158 YVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLIENCSSGG 237 (394)
T ss_dssp EEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-BTTB
T ss_pred eEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEEEeccCCC
Confidence 799999999999986655 568999999999999742 1 111 12333 36667777778899988862
Q ss_pred CCCCchhhhhhcccccEEEEecCCCCChhhHHHHhhhhhhhhhhhhhcccCCCCCCc--CCCCCCcCCccCCCCCCCCCC
Q 008142 254 TGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSW--PDLDMLPLGWLTDPGSNEGPH 331 (576)
Q Consensus 254 ~~~~p~~a~~~~~~~n~~Ris~D~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~w--nDpDmL~~g~~~~~~~~~g~~ 331 (576)
....+.+. .|.+..-+|+++ +.+.++.-.......+-.. .. +.| .-|.+.
T Consensus 238 ~R~D~g~l----~~~~~~w~SD~t-da~~R~~iq~g~s~~~p~~-~~-------~~hv~~~p~~~--------------- 289 (394)
T PF02065_consen 238 GRFDPGML----YYTPQSWTSDNT-DALERLRIQYGTSLFYPPE-YM-------GAHVSASPNHQ--------------- 289 (394)
T ss_dssp TTTSHHHH----CCSSEEESBST--SHHHHHHHHHHHCTTSSGG-GE-------EEEEEHSS-TT---------------
T ss_pred Cccccchh----eeccccccCCcc-chHHHhhhhcccccccCHH-Hh-------CCeEEeccccc---------------
Confidence 23334332 467777777654 4444443222111111000 00 111 111111
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCeeeccCCCCCCHhHHhccCChhhhhhccC
Q 008142 332 RTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTF 383 (576)
Q Consensus 332 ~~~~lT~~E~rt~~slwa~~~sPLi~g~Dl~~~~~~~l~lltN~eliainqd 383 (576)
....++-+.|+++ ||+ +.|.++-||.+++++.++.+. +.|++-+.
T Consensus 290 -~~r~~~l~~r~~~---a~~-g~~g~e~dl~~ls~~e~~~~~--~~ia~YK~ 334 (394)
T PF02065_consen 290 -TGRTTPLEFRAHV---AMF-GRLGLELDLTKLSEEELAAVK--EQIAFYKS 334 (394)
T ss_dssp -THHHGGHHHHHHH---HTC-SEEEEESTGCGS-HHHHHHHH--HHHHHHHH
T ss_pred -cCCcccceechhh---hhc-CCceeccCcccCCHHHHHHHH--HHHHHHHh
Confidence 1123344555554 333 899999999999988888773 55555543
No 8
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=1.4e-22 Score=214.61 Aligned_cols=179 Identities=21% Similarity=0.406 Sum_probs=138.6
Q ss_pred cccccccCCCCCCCCceEeccccccCcCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCC
Q 008142 22 VSSISEAVPVRASSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEW 101 (576)
Q Consensus 22 ~~~~~~~~~~~~~~pPmGWnSW~~~~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~ 101 (576)
|+..-.+.+-..+..|||||||++|+.+++++.++++++. +|+.|.+.|+|||||+..+. +....-
T Consensus 278 v~~~i~~~~~~~kprPi~~nsWea~Yfd~t~e~ile~vk~----akk~gvE~FvlDDGwfg~rn----------dd~~sl 343 (687)
T COG3345 278 VRMEIVPRPRVKKPRPIGWNSWEAYYFDFTEEEILENVKE----AKKFGVELFVLDDGWFGGRN----------DDLKSL 343 (687)
T ss_pred HHhhcCcccccCCCCcceeeceeeeeecCCHHHHHHHHHH----HhhcCeEEEEEccccccccC----------cchhhh
Confidence 3444445556667779999999999999999999999874 57899999999999997532 223457
Q ss_pred CCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccc-
Q 008142 102 GRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERA- 180 (576)
Q Consensus 102 G~~~~d~~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~- 180 (576)
|+|..+.+|||+ |+..+++.||+.||+||||+.|++ +..+|.+++.| ++|..+--+.+...
T Consensus 344 GDWlv~seKfPs-----giE~li~~I~e~Gl~fGIWlePem----vs~dSdlfrqH---------PDWvvk~~G~p~~~~ 405 (687)
T COG3345 344 GDWLVNSEKFPS-----GIEELIEAIAENGLIFGIWLEPEM----VSEDSDLFRQH---------PDWVVKVNGYPLMAG 405 (687)
T ss_pred hceecchhhccc-----cHHHHHHHHHHcCCccceeecchh----cccchHHHhhC---------CCeEEecCCcccccc
Confidence 999999999998 999999999999999999999986 44677777654 45544422222111
Q ss_pred ----cccCCCCceeecCCcHHHHHHHHHHHHHHH-hhCccEEEecCCCCCCCChHHH
Q 008142 181 ----CAWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDDLDINEI 232 (576)
Q Consensus 181 ----~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~~~~~~~~y 232 (576)
..|.....+.+|.+++.++.++..++++++ +||.+++|+|+.+......++|
T Consensus 406 Rnqyvl~~s~p~vv~~l~~~l~qll~~~~v~ylkwdmnr~l~klg~~~~~~l~qqry 462 (687)
T COG3345 406 RNQYVLWLSNPIVVLDLSEDLVQLLLFHLVSYLKWDMNRELFKLGFLFWGALPQQRY 462 (687)
T ss_pred ccchhhhccChHHHHHhhhHHHHHHHhhhHHHHHHHhCcceeecCCCCCccccchHH
Confidence 124434457888888899999999999999 9999999999988765555554
No 9
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.77 E-value=4.4e-17 Score=169.37 Aligned_cols=202 Identities=16% Similarity=0.241 Sum_probs=137.1
Q ss_pred CCCceEeccccccCcCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCC
Q 008142 34 SSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPS 113 (576)
Q Consensus 34 ~~pPmGWnSW~~~~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~ 113 (576)
.++|+ ||||+++...+||++|+++++.+++. ...+++|+||++|+. ..|+++.|++|||+
T Consensus 12 ~~~p~-W~~W~~~~~~~s~~~v~~~~~~~~~~--~iP~d~i~iD~~w~~-----------------~~g~f~~d~~~FPd 71 (303)
T cd06592 12 FRSPI-WSTWARYKADINQETVLNYAQEIIDN--GFPNGQIEIDDNWET-----------------CYGDFDFDPTKFPD 71 (303)
T ss_pred hCCCc-cCChhhhccCcCHHHHHHHHHHHHHc--CCCCCeEEeCCCccc-----------------cCCccccChhhCCC
Confidence 67888 99999999999999999999976432 234689999999985 35889999999995
Q ss_pred CCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccc-cccccccCCCCceeec
Q 008142 114 SRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGL-KERACAWMQHGFMSVN 192 (576)
Q Consensus 114 ~~~~~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~-~~~~~~~~~~~~~~lD 192 (576)
++.|+++||++|+|++||+.|++.. +++.+.+.. -..+..++... ....-.|.++..+.+|
T Consensus 72 ------p~~mi~~l~~~G~k~~l~i~P~i~~-----~s~~~~e~~-------~~g~~vk~~~g~~~~~~~~w~g~~~~~D 133 (303)
T cd06592 72 ------PKGMIDQLHDLGFRVTLWVHPFINT-----DSENFREAV-------EKGYLVSEPSGDIPALTRWWNGTAAVLD 133 (303)
T ss_pred ------HHHHHHHHHHCCCeEEEEECCeeCC-----CCHHHHhhh-------hCCeEEECCCCCCCcccceecCCcceEe
Confidence 9999999999999999999998742 333332100 01222222111 0011123344457899
Q ss_pred CCcHHHHHHHHHHHHHHH-hhCccEEEecCCCCCC-----------CChHHH-HHHHHHHHhCCCCeEEEcCCCCCCCch
Q 008142 193 TKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDD-----------LDINEI-SFVSEVLKELDRPIVYSLSPGTGVTPA 259 (576)
Q Consensus 193 ~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~~~-----------~~~~~y-~~m~~al~~~gr~i~lsls~~~~~~p~ 259 (576)
+|||++++|+.+.++.+. ++|||++|+|+.-+.. ..+..| ..+.++..+.+ |++++=|.
T Consensus 134 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~p~~~~~~~~~~~~n~y~~~~~~~~~~~~-~~~~~Rsg------- 205 (303)
T cd06592 134 FTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEASYLPQDYVTEDPLLNPDEYTRLYAEMVAEFG-DLIEVRAG------- 205 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCcccCCcccccCCcccCHHHHHHHHHHHHHhhc-cceEEEee-------
Confidence 999999999988887766 9999999999864311 112334 34556665554 66665432
Q ss_pred hhhhhcccccEEEEecCCCCChhhH
Q 008142 260 MAKEVSGLVNMYRITGDDWDTWGDV 284 (576)
Q Consensus 260 ~a~~~~~~~n~~Ris~D~~~~W~~~ 284 (576)
++ ....++-.| ++|...+|+.+
T Consensus 206 ~~-g~~~~~~~w--~GD~~s~W~~~ 227 (303)
T cd06592 206 WR-SQGLPLFVR--MMDKDSSWGGD 227 (303)
T ss_pred ee-cCCCCeeEE--cCCCCCCCCCC
Confidence 11 111122233 68888899876
No 10
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=99.77 E-value=2.7e-17 Score=182.64 Aligned_cols=299 Identities=15% Similarity=0.142 Sum_probs=174.6
Q ss_pred CCCc-----eEeccccccCcCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccC--CccccCC-CccccCCCCCce
Q 008142 34 SSPP-----RGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVK--GAYVDSL-GFDVIDEWGRMI 105 (576)
Q Consensus 34 ~~pP-----mGWnSW~~~~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~--g~~~~~~-~~~~~d~~G~~~ 105 (576)
++.| +|||||++|+.+|||+.|++.++.|+++-.+. ++|+||||||..... +.-+... +.......-++.
T Consensus 196 K~~P~~ld~~GWCTW~afy~~Vt~~~I~~~l~~l~~~g~p~--~~viIDDGwQs~~~d~~~~~~~~~~~~q~~~rL~~f~ 273 (758)
T PLN02355 196 KKMPDMLNWFGWCTWDAFYTNVTAEGVKQGLESLEKGGVTP--KFVIIDDGWQSVGMDPTGIECLADNSANFANRLTHIK 273 (758)
T ss_pred ccCCcccceeeEEehhHhhccCCHHHHHHHHHHHHhCCCCc--cEEEEeccccccccccccccccccccchhhhhhcccc
Confidence 4677 89999999999999999999999987654444 799999999985210 0000000 000001122345
Q ss_pred eCCCCCCCC-C-------CCCChHHHHHHHHH-cCCeE-EEEeecCccccccCCCCccccccc-CCCcccC--CCccccc
Q 008142 106 PDPDRWPSS-R-------GGKGFTEVAKKVHA-MGLKF-GIHVMRGISTQAFNADTPILDTLK-GGAYEDS--GRQWRAK 172 (576)
Q Consensus 106 ~d~~kFP~~-~-------~~~Glk~la~~ih~-~Glk~-Giy~~pg~~~~a~~~~spi~~~~~-~~~~~~~--g~~~~~~ 172 (576)
.++ |||.- . ...|||.+++.||+ .|+|- |+|.+-.--+..+.|+.+....+. -..|+.. |..-...
T Consensus 274 ~n~-KF~~~~~~~~~~~~~~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spGv~~~~~ 352 (758)
T PLN02355 274 ENH-KFQKNGKEGHRVDDPALGLGHIVTEIKEKHSLKYVYVWHAITGYWGGVKPGVAGMEHYESKMSYPVSSPGVQSNEP 352 (758)
T ss_pred ccc-cccccccccccccCCCCcHHHHHHHHHhhcCCcEEEEeeeecceecCcCCCCcccccccccccccccCCcccccCc
Confidence 563 77730 0 02499999999997 68864 999876444444555554332111 0112111 1000111
Q ss_pred cccccccccccCCCCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCC-----CCC-ChH-H----HHHHHHHHHh
Q 008142 173 DIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFG-----DDL-DIN-E----ISFVSEVLKE 241 (576)
Q Consensus 173 di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~-----~~~-~~~-~----y~~m~~al~~ 241 (576)
|+.+... .+++...+|| ..+..|++.+.+.+++-|||+||+|...- .++ +.. - +.++..++.+
T Consensus 353 ~~a~d~i----~~~G~glv~P--e~~~~FY~~~hsyL~s~GVDgVKVD~Q~~le~l~~g~ggrv~la~~y~~ALe~S~~r 426 (758)
T PLN02355 353 CDALESI----TTNGLGLVNP--EKVFSFYNELHSYLASAGIDGVKVDVQNILETLGAGHGGRVKLARKYHQALEASIAR 426 (758)
T ss_pred chhhhhc----ccCceeccCH--HHHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 1110000 0122233443 34688999999999999999999996321 111 111 1 2344444333
Q ss_pred C--CCCeEEEcCCCCCCCchhhhhhcccccEEEEecCCCCChhhHHH--HhhhhhhhhhhhhhcccCCCCCCcCCCCCCc
Q 008142 242 L--DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAA--HFNVSRDFSAANMIGAKGLQGKSWPDLDMLP 317 (576)
Q Consensus 242 ~--gr~i~lsls~~~~~~p~~a~~~~~~~n~~Ris~D~~~~W~~~~~--~~~~~~~~~~~~~~~~~g~~~~~wnDpDmL~ 317 (576)
. ++-++-++|.... .+.. .+...+.|+|+|-++.+..... ++..+++ .++. +...|||-||+.
T Consensus 427 ~F~~ngvI~CMs~~~d---~i~~--~k~sav~R~SDDF~P~dP~sh~~Hi~~~AyN----SLll----g~~v~PDWDMF~ 493 (758)
T PLN02355 427 NFPDNGIISCMSHNTD---GLYS--AKRTAVIRASDDFWPRDPASHTIHIASVAYN----TIFL----GEFMQPDWDMFH 493 (758)
T ss_pred hCCCCceEEecccCch---hhcc--cccceeeeeccccccCCCccCchhhhhhhhh----hhhh----ccccccCcccce
Confidence 2 4556655554221 1111 2467899999999887764432 2222221 1221 235789999997
Q ss_pred CCccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeeeccCCCCCCHhHHhcc
Q 008142 318 LGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLI 372 (576)
Q Consensus 318 ~g~~~~~~~~~g~~~~~~lT~~E~rt~~slwa~~~sPLi~g~Dl~~~~~~~l~ll 372 (576)
--. .-.+.|..+-|++|+|++++|.+-+-+-+.++=|
T Consensus 494 S~h------------------p~A~~HAaaRAisGGPIYvSD~PG~hdf~LLk~L 530 (758)
T PLN02355 494 SLH------------------PMAEYHAAARAVGGCAIYVSDKPGQHDFNLLKKL 530 (758)
T ss_pred ecC------------------ccHHHHHHHHhccCCcEEEecCCCCccHHHHHhh
Confidence 431 2357899999999999999999888776666544
No 11
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=99.74 E-value=9.6e-17 Score=177.91 Aligned_cols=297 Identities=15% Similarity=0.135 Sum_probs=175.2
Q ss_pred CCCCCc-----eEeccccccCcCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCcc---ccCCCccccCCCCC
Q 008142 32 RASSPP-----RGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAY---VDSLGFDVIDEWGR 103 (576)
Q Consensus 32 ~~~~pP-----mGWnSW~~~~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~---~~~~~~~~~d~~G~ 103 (576)
.-++.| +|||||++|+.+|||+.|++.++.|+++-.+. .+|+||||||.-...+.. .-..|.......-+
T Consensus 190 e~K~~p~~~D~~GWCTWdafy~dVt~~~I~~~l~~l~e~gip~--~~viIDDGwQsi~~~~~~~~~~~~~g~qf~~rL~~ 267 (775)
T PLN02219 190 EKKKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTPP--KFLIIDDGWQQIENKEKDENCVVQEGAQFATRLTG 267 (775)
T ss_pred ccccCccccceeeEEEhhHhhccCCHHHHHHHHHHHHhCCCCc--eEEEEccCccccccccccccccccccchhhhhhcc
Confidence 456778 89999999999999999999999887654443 799999999985321100 00000000001223
Q ss_pred ceeCC--------CCCCCCCCCCChHHHHHHHHH-cCCe-EEEEeecCccccccCCCCccccccc-CCCcccC--CCccc
Q 008142 104 MIPDP--------DRWPSSRGGKGFTEVAKKVHA-MGLK-FGIHVMRGISTQAFNADTPILDTLK-GGAYEDS--GRQWR 170 (576)
Q Consensus 104 ~~~d~--------~kFP~~~~~~Glk~la~~ih~-~Glk-~Giy~~pg~~~~a~~~~spi~~~~~-~~~~~~~--g~~~~ 170 (576)
+..++ ..||. |||.+++.||+ .|+| +|+|.+-.--+....|+.+....+. -..|+.. |..-.
T Consensus 268 f~en~KF~~~~~~~~fp~-----Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spg~~~~ 342 (775)
T PLN02219 268 IKENAKFQKNDQKNEQVS-----GLKHVVDDAKQRHNVKQVYVWHALAGYWGGVKPAAAGMEHYDSALAYPVQSPGVLGN 342 (775)
T ss_pred ccccccccccccccCCCC-----cHHHHHHHHHhccCCcEEEEeeeccceecCcCCCCcccccccccccccccCCCcccc
Confidence 33442 14676 99999999996 6886 4888876444444555554332111 0011110 00000
Q ss_pred cccccccccccccCCCCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCC-----CCC-C-hHHHHHHHHHHHhC-
Q 008142 171 AKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFG-----DDL-D-INEISFVSEVLKEL- 242 (576)
Q Consensus 171 ~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~-----~~~-~-~~~y~~m~~al~~~- 242 (576)
..|+.... -...+...||| +.+..|++.+.+.+++-|||+||+|...- .++ + .+-.++..+||+++
T Consensus 343 ~pd~a~d~----l~~~G~glV~P--~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggrv~la~~y~~ALe~S~ 416 (775)
T PLN02219 343 QPDIVMDS----LSVHGLGLVNP--KKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYQQALEASI 416 (775)
T ss_pred Ccchhhhh----hhhCCccccCH--HHHHHHHHHHHHHHHHcCCCEEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHH
Confidence 00100000 00123345665 46789999999999999999999996431 111 1 11123344444332
Q ss_pred -----CCCeEEEcCCCCCCCchhhhhhcccccEEEEecCCCCChhhHHH--HhhhhhhhhhhhhhcccCCCCCCcCCCCC
Q 008142 243 -----DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAA--HFNVSRDFSAANMIGAKGLQGKSWPDLDM 315 (576)
Q Consensus 243 -----gr~i~lsls~~~~~~p~~a~~~~~~~n~~Ris~D~~~~W~~~~~--~~~~~~~~~~~~~~~~~g~~~~~wnDpDm 315 (576)
++.++-++|.... .+.. .+...+.|+|+|-++.+..... ++..+++ .++. +...|||-||
T Consensus 417 ~r~F~~ng~I~CMsh~~d---~i~~--~k~sav~R~SDDF~P~dP~sh~~Hi~~nAyN----SLll----g~~v~PDWDM 483 (775)
T PLN02219 417 ARNFTDNGCISCMCHNTD---GLYS--AKQTAVVRASDDFYPRDPASHTIHISSVAYN----TLFL----GEFMQPDWDM 483 (775)
T ss_pred HHhCCCCCeEEecccCch---hhhc--ccccceeecccccccCCCccCcchhhhhhhh----hHHh----ccccccCchh
Confidence 4556666654221 1111 3567899999999877654332 1222211 1221 2357899999
Q ss_pred CcCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeeeccCCCCCCHhHHhcc
Q 008142 316 LPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLI 372 (576)
Q Consensus 316 L~~g~~~~~~~~~g~~~~~~lT~~E~rt~~slwa~~~sPLi~g~Dl~~~~~~~l~ll 372 (576)
+.--. .-.+.|..+-|++|+|++++|.+-+-+-+.++=|
T Consensus 484 FqS~H------------------p~A~~HAaaRAiSGGPIYvSD~PG~Hdf~LLk~L 522 (775)
T PLN02219 484 FHSLH------------------PAAEYHGAARAVGGCAIYVSDKPGNHNFDLLRKL 522 (775)
T ss_pred ceecC------------------ccHHHHHHHHhhcCCcEEEecCCCCccHHHHHHh
Confidence 97431 2348899999999999999999988776666544
No 12
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=99.74 E-value=1.4e-16 Score=176.48 Aligned_cols=295 Identities=15% Similarity=0.133 Sum_probs=173.8
Q ss_pred eEeccccccCcCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccc--cCCCccccCCCCCceeCCCCCCCCC
Q 008142 38 RGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYV--DSLGFDVIDEWGRMIPDPDRWPSSR 115 (576)
Q Consensus 38 mGWnSW~~~~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~--~~~~~~~~d~~G~~~~d~~kFP~~~ 115 (576)
+|||||++|+.+|+|+.|++.++.|+++-.+. .+|+||||||.....+... ...+.......-++..+ .|||...
T Consensus 204 fGWCTWdafy~dVt~~~I~~~l~~l~~~g~p~--~~vIIDDGwQs~~~d~~~~~~~~~~~q~~~rL~~f~en-~KF~~~~ 280 (750)
T PLN02684 204 FGWCTWDAFYQEVTQEGVEAGLKSLAAGGTPP--KFVIIDDGWQSVGGDPTVEAGDEKKEQPLLRLTGIKEN-EKFKKKD 280 (750)
T ss_pred eeEEEhhHhhccCCHHHHHHHHHHHHhCCCCc--eEEEEecccccccccccccccccccchhhhhhccCccc-ccccccc
Confidence 69999999999999999999999887654444 7999999999854211000 00000000011224455 7887421
Q ss_pred C-CCChHHHHHHHH-HcCCeE-EEEeecCccccccCCCCcccccccC-CCcccC--CCccccccccccccccccCCCCce
Q 008142 116 G-GKGFTEVAKKVH-AMGLKF-GIHVMRGISTQAFNADTPILDTLKG-GAYEDS--GRQWRAKDIGLKERACAWMQHGFM 189 (576)
Q Consensus 116 ~-~~Glk~la~~ih-~~Glk~-Giy~~pg~~~~a~~~~spi~~~~~~-~~~~~~--g~~~~~~di~~~~~~~~~~~~~~~ 189 (576)
. ..|||.+++.|| +.|+|- |+|.+-.--+....|+.+...++.. ..|+.. |......|+..... ..++..
T Consensus 281 ~p~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~s~~~~p~~s~gv~~~~p~~~~d~l----~~~g~g 356 (750)
T PLN02684 281 DPNVGIKNIVNIAKEKHGLKYVYVWHAITGYWGGVRPGVKEMEEYGSVMKYPNVSKGVVENDPTWKTDVM----TLQGLG 356 (750)
T ss_pred CCCccHHHHHHHHHhhcCCcEEEEEeeecccccccCCCCcchhhccccccccccCccccccCcccccccc----ccCccc
Confidence 1 149999999998 668864 8998764445556666655432210 112211 11111111110000 001223
Q ss_pred eecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCC-----CCC-C-hHHHHHHHHHHHhC------CCCeEEEcCCCCCC
Q 008142 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFG-----DDL-D-INEISFVSEVLKEL------DRPIVYSLSPGTGV 256 (576)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~-----~~~-~-~~~y~~m~~al~~~------gr~i~lsls~~~~~ 256 (576)
.++| ..+..|++.+.+.+++-|||+||+|...- .++ + .+-.++..+||+++ ++-++-++|.....
T Consensus 357 lv~P--~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~le~l~~~~ggrv~l~~ay~~ALe~S~~r~F~~ngvI~CMs~~~d~ 434 (750)
T PLN02684 357 LVNP--KKVYKFYNELHSYLADAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNFPDNGCIACMSHNTDA 434 (750)
T ss_pred ccCH--HHHHHHHHHHHHHHHHcCCCeEEEChhhhHHHhhcccCcHHHHHHHHHHHHHHHHHHhCCCCCeEEecccCchh
Confidence 4554 45788999999999999999999996431 111 1 12123344444432 33466555542211
Q ss_pred CchhhhhhcccccEEEEecCCCCChhhHHH--HhhhhhhhhhhhhhcccCCCCCCcCCCCCCcCCccCCCCCCCCCCCCC
Q 008142 257 TPAMAKEVSGLVNMYRITGDDWDTWGDVAA--HFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTC 334 (576)
Q Consensus 257 ~p~~a~~~~~~~n~~Ris~D~~~~W~~~~~--~~~~~~~~~~~~~~~~~g~~~~~wnDpDmL~~g~~~~~~~~~g~~~~~ 334 (576)
.+. .+...+.|.|+|-++.+..... ++..+++ .++. +...|||-||+.--.
T Consensus 435 --i~~---sk~sav~R~SDDF~p~dP~sh~~Hi~~~AyN----SLll----g~~v~PDWDMFqS~h-------------- 487 (750)
T PLN02684 435 --LYC---SKQTAVVRASDDFYPRDPVSHTIHIAAVAYN----SVFL----GEFMQPDWDMFHSLH-------------- 487 (750)
T ss_pred --hhc---ccccceeeeccccccCCCccchhhhhhhhhh----hhhh----ccccccCcccceecC--------------
Confidence 121 2467899999999876654332 2222221 1221 235789999996432
Q ss_pred CCCHHHHHHHHHHHHHhcCCeeeccCCCCCCHhHHhcc
Q 008142 335 NLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLI 372 (576)
Q Consensus 335 ~lT~~E~rt~~slwa~~~sPLi~g~Dl~~~~~~~l~ll 372 (576)
.-.+.|..+-|++|+|++++|.+-+-+-+.++=|
T Consensus 488 ----p~A~~HAaaRAisGGPIYvSD~PG~Hdf~LLk~L 521 (750)
T PLN02684 488 ----PAAEYHASARAISGGPLYVSDAPGKHNFELLKKL 521 (750)
T ss_pred ----ccHHHHHHHHhhcCCceEEecCCCCccHHHHHhh
Confidence 2348899999999999999999888776666544
No 13
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=99.71 E-value=7.1e-16 Score=172.52 Aligned_cols=302 Identities=16% Similarity=0.231 Sum_probs=171.5
Q ss_pred eEeccccccCcCCCHHHHHHHHHHHHH-hhccCCceEEEecccccccccCCccccC-------CC--cc----ccCCCCC
Q 008142 38 RGWNSYDSFCWTISEEEFLQSAEIISQ-RLRPHGYEYVVVDYLWYRRKVKGAYVDS-------LG--FD----VIDEWGR 103 (576)
Q Consensus 38 mGWnSW~~~~~~ise~~i~~~ad~~~~-gl~~~Gy~yv~iDdgW~~~~~~g~~~~~-------~~--~~----~~d~~G~ 103 (576)
+|||||++|+.+++++.|++.++.+++ ++.+ .+++||||||.-...+..... .| +. .+.++.+
T Consensus 197 lGwCTWdaf~~~v~~~~i~~~l~~L~~~gi~~---~~viIDDGWQ~~~~~~~~~~~~~~~~~~~g~q~~~rl~~~~en~k 273 (747)
T PF05691_consen 197 LGWCTWDAFYQDVTEEGILEGLKSLEEGGIPP---RFVIIDDGWQSVDNDGDDPSKDGMNLVQEGAQFPRRLTDFKENSK 273 (747)
T ss_pred hccccHHHhccccCHHHHHHHHHHHHhCCCCc---eEEEEecchhcccccCcccccccccccccccccchhhhhhhhhhh
Confidence 699999999999999999999987643 3432 589999999986433321000 00 00 0111111
Q ss_pred ceeC-----CCCCCCCCCCCChHHHHHHHHHc--CCe-EEEEeecCccccccCCCCcccccccCCCccc--CCCcccccc
Q 008142 104 MIPD-----PDRWPSSRGGKGFTEVAKKVHAM--GLK-FGIHVMRGISTQAFNADTPILDTLKGGAYED--SGRQWRAKD 173 (576)
Q Consensus 104 ~~~d-----~~kFP~~~~~~Glk~la~~ih~~--Glk-~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~--~g~~~~~~d 173 (576)
.... +++||. |||.+++.||++ |+| +|+|.+-.=-+....|+.+..-.. -..|+. .|-.-...|
T Consensus 274 F~~~~~~~~~~~~~~-----GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~-k~~~~~~spg~~~~~~d 347 (747)
T PF05691_consen 274 FRAYKSGKSPEAFPS-----GLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNY-KLVYPKLSPGLQGNMPD 347 (747)
T ss_pred hhhccCCCcccCCcc-----cHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCcccccc-ceeecccCCcccccCcc
Confidence 1111 235776 999999999998 885 599976432233344443321000 000000 000001111
Q ss_pred ccccccccccCCCCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCC-----CCC-Ch-H---HH-HHHHHHHHh-
Q 008142 174 IGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFG-----DDL-DI-N---EI-SFVSEVLKE- 241 (576)
Q Consensus 174 i~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~-----~~~-~~-~---~y-~~m~~al~~- 241 (576)
+..... ...+...++| ..+..|++.+++.+++-|||+||+|.... ..+ .. + .| ++|..++.+
T Consensus 348 ~~~d~~----~~~g~glv~p--~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~l~~l~~~~ggrv~la~ay~~AL~~S~~r~ 421 (747)
T PF05691_consen 348 LAVDSI----VKGGLGLVDP--EDAFRFYDDFHSYLASAGVDGVKVDVQAILETLGEGYGGRVELARAYQDALEASVARH 421 (747)
T ss_pred cccccc----ccCcccccCH--HHHHHHHHHHHHHHHHcCCCEEEEchhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHh
Confidence 100000 0112223443 24788999999999999999999997431 112 11 1 12 345554433
Q ss_pred C-CCCeEEEcCCCCCCCchhhhhhcccccEEEEecCCCCChhhH----------HHHhhhhhhhhhhhhhcccCCCCCCc
Q 008142 242 L-DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDV----------AAHFNVSRDFSAANMIGAKGLQGKSW 310 (576)
Q Consensus 242 ~-gr~i~lsls~~~~~~p~~a~~~~~~~n~~Ris~D~~~~W~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~w 310 (576)
. ++.++-++|..... .|.. .+.....|+|+|-++.+... ..++..+++ .++. +...|
T Consensus 422 F~~~~vI~CMsh~~~~--l~~~--~~~~av~R~SDDF~P~~p~s~p~g~~w~h~~Hi~~nAyN----sL~~----g~~~~ 489 (747)
T PF05691_consen 422 FSGNGVINCMSHNPDN--LYHS--TKQSAVVRNSDDFFPRDPASDPNGVFWLHTWHIAHNAYN----SLLL----GQFVW 489 (747)
T ss_pred CCCCCeEEecCCCccc--hhcc--cccccceeccccccCCCCCCCccccchhhHHHHHHHHHH----HHHH----HhhcC
Confidence 2 45677666642211 1211 23457899999998765432 122222211 1221 12478
Q ss_pred CCCCCCcCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeeeccCCCCCCHhHHh--ccCChhhhhhccCC
Q 008142 311 PDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYS--LITNPTVLEINTFS 384 (576)
Q Consensus 311 nDpDmL~~g~~~~~~~~~g~~~~~~lT~~E~rt~~slwa~~~sPLi~g~Dl~~~~~~~l~--lltN~eliainqd~ 384 (576)
+|-||+.--. .-.+.|..+-||+|+|++|+|.+-+.+-+.++ ++.+-.||+....+
T Consensus 490 PDwDMF~S~h------------------~~A~~HAaaRaiSGGPVYiSD~pG~hd~~LLk~LvlpDG~ilR~~~pg 547 (747)
T PF05691_consen 490 PDWDMFQSSH------------------PAAEFHAAARAISGGPVYISDKPGKHDFDLLKKLVLPDGSILRADHPG 547 (747)
T ss_pred CCcccccccC------------------ccHHHHHHHHhhcCCCEEEeeCCCCCCHHHHHHhhCCCCceeccccCC
Confidence 9999997331 24678999999999999999999887766655 44555566555544
No 14
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=99.64 E-value=7.3e-15 Score=163.16 Aligned_cols=288 Identities=14% Similarity=0.170 Sum_probs=163.4
Q ss_pred eEeccccccCcCCCHHHHHHHHHHHHH-hhccCCceEEEecccccccccCCccc-cCCCccccC--------CCCCceeC
Q 008142 38 RGWNSYDSFCWTISEEEFLQSAEIISQ-RLRPHGYEYVVVDYLWYRRKVKGAYV-DSLGFDVID--------EWGRMIPD 107 (576)
Q Consensus 38 mGWnSW~~~~~~ise~~i~~~ad~~~~-gl~~~Gy~yv~iDdgW~~~~~~g~~~-~~~~~~~~d--------~~G~~~~d 107 (576)
+|||||++|+.+|||+.|++-++-+++ +..+ .+++||||||.-...++.. ...+- .+. ..-++..+
T Consensus 215 fGWCTWdAfy~~Vt~egI~~gl~~L~~~Gip~---~~vIIDDGWQsi~~d~~~~~~~~~~-~~~~~g~q~~~rL~~f~en 290 (777)
T PLN02711 215 FGWCTWDAFYLTVHPQGVWEGVKGLVDGGCPP---GLVLIDDGWQSICHDEDPISDQEGM-NRTVAGEQMPCRLLKFEEN 290 (777)
T ss_pred ceEEehhHhcccCCHHHHHHHHHHHHhCCCCc---cEEEEcCCcccccccCccccccccc-ccccccchhhhhhcccccc
Confidence 699999999999999999999997754 3443 5999999999742111000 00000 000 01123344
Q ss_pred ---------CCCCCCCCCCCChHHHHHHHHHc--CCe-EEEEeecCccccccCCCCcccccccCCCcccC--CCcccccc
Q 008142 108 ---------PDRWPSSRGGKGFTEVAKKVHAM--GLK-FGIHVMRGISTQAFNADTPILDTLKGGAYEDS--GRQWRAKD 173 (576)
Q Consensus 108 ---------~~kFP~~~~~~Glk~la~~ih~~--Glk-~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~--g~~~~~~d 173 (576)
+.+||. |||.+++.||++ |+| +|+|.+-.-.+..+.|+.+.+.+. -..|+.- |..-+.+|
T Consensus 291 ~KF~~~~~~~~~~p~-----Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~-~~~~p~~spg~~~~~~d 364 (777)
T PLN02711 291 YKFRDYVSPKSLSNK-----GMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPES-KVVAPKLSPGLKMTMED 364 (777)
T ss_pred ccccccccccCCCCC-----cHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccc-eeeccccCccccccccc
Confidence 334565 999999999995 675 499987544444455555432110 0011110 10001112
Q ss_pred ccccccccccCCCCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCC-----CCCC-ChHH-----HHHHHHHHHh-
Q 008142 174 IGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF-----GDDL-DINE-----ISFVSEVLKE- 241 (576)
Q Consensus 174 i~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~-----~~~~-~~~~-----y~~m~~al~~- 241 (576)
+..... ..++...+|| ..+..|++.+.+.+++-|||+||+|... ...+ +..+ +.++..++.+
T Consensus 365 ~~~d~~----~~~g~glv~P--e~~~~FY~~~hs~Las~GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~S~~r~ 438 (777)
T PLN02711 365 LAVDKI----VNNGVGLVPP--ELAYQMYEGLHSHLQSVGIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTASVRKH 438 (777)
T ss_pred cccccc----ccCcccccCH--HHHHHHHHHHHHHHHHcCCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHHHHHHh
Confidence 111000 0122334555 4468899999999999999999999532 1122 1211 2344444444
Q ss_pred -CCCCeEEEcCCCCCCCch-hhhhhcccccEEEEecCCCCC----------hhhHHHHhhhhhhhhhhhhhcccCCCCCC
Q 008142 242 -LDRPIVYSLSPGTGVTPA-MAKEVSGLVNMYRITGDDWDT----------WGDVAAHFNVSRDFSAANMIGAKGLQGKS 309 (576)
Q Consensus 242 -~gr~i~lsls~~~~~~p~-~a~~~~~~~n~~Ris~D~~~~----------W~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 309 (576)
-++-++-++|.. +. +.-. .+...+.|+|+|-++. |-.-..++..+++ .++. +...
T Consensus 439 F~~ng~I~CMs~~----~d~~~~~-tk~~av~R~SDDF~p~dP~sh~~g~~W~~~~Hi~~~AyN----SLll----g~~v 505 (777)
T PLN02711 439 FNGNGVIASMEHC----NDFMFLG-TEAISLGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYN----SLWM----GNFI 505 (777)
T ss_pred CCCCCeEeecccC----chhhhcc-CcccceeeecccccCCCCccccccccccccceeeeehhh----hhhh----cccc
Confidence 244466555531 21 1000 2345689999998742 3111111111111 1221 2357
Q ss_pred cCCCCCCcCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeeeccCCCCCCHhHHhcc
Q 008142 310 WPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLI 372 (576)
Q Consensus 310 wnDpDmL~~g~~~~~~~~~g~~~~~~lT~~E~rt~~slwa~~~sPLi~g~Dl~~~~~~~l~ll 372 (576)
|||-||+.--. .-.+.|..+-|++|+|++++|.+-+-+-+.++=|
T Consensus 506 ~PDWDMF~S~H------------------p~A~~HAaaRAisGGPIYVSD~pG~Hdf~LLk~L 550 (777)
T PLN02711 506 HPDWDMFQSTH------------------PCAEFHAASRAISGGPIYVSDSVGKHNFPLLKRL 550 (777)
T ss_pred cCCchhhhccC------------------chHHHHHHHHhhcCCCEEEecCCCCccHHHHHhh
Confidence 89999997431 3568899999999999999999987766655543
No 15
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=99.57 E-value=7e-14 Score=145.81 Aligned_cols=194 Identities=19% Similarity=0.268 Sum_probs=131.3
Q ss_pred CCCHHHHHHHHHHHHHhhccCC--ceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHH
Q 008142 49 TISEEEFLQSAEIISQRLRPHG--YEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKK 126 (576)
Q Consensus 49 ~ise~~i~~~ad~~~~gl~~~G--y~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ 126 (576)
..+++++++.++.++ ++| ++.|.||++|+.. ...|.+..|++|||+ ++.|++.
T Consensus 20 y~~~~~v~~~~~~~~----~~~iP~d~~~lD~~w~~~---------------~~~~~f~~d~~~FPd------~~~~i~~ 74 (308)
T cd06593 20 YYDEEEVNEFADGMR----ERNLPCDVIHLDCFWMKE---------------FQWCDFEFDPDRFPD------PEGMLSR 74 (308)
T ss_pred CCCHHHHHHHHHHHH----HcCCCeeEEEEecccccC---------------CcceeeEECcccCCC------HHHHHHH
Confidence 489999999988654 444 6889999999853 124689999999995 9999999
Q ss_pred HHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHH
Q 008142 127 VHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLY 206 (576)
Q Consensus 127 ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~ 206 (576)
||++|+|+++|+.|++.. +++++.+.. -..|..++.........+.++....+|+|+|++++|+.+.+
T Consensus 75 l~~~G~~~~~~~~P~i~~-----~~~~~~e~~-------~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~ 142 (308)
T cd06593 75 LKEKGFKVCLWINPYIAQ-----KSPLFKEAA-------EKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKL 142 (308)
T ss_pred HHHCCCeEEEEecCCCCC-----CchhHHHHH-------HCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHH
Confidence 999999999999998742 344432210 01223333222212223334455789999999999999999
Q ss_pred HHHHhhCccEEEecCCCC---C-----C---CCh-HHH-----HHHHHHHHhC-C--CCeEEEcCCCCCCCchhhhhhcc
Q 008142 207 QQYAEWGVDFVKHDCVFG---D-----D---LDI-NEI-----SFVSEVLKEL-D--RPIVYSLSPGTGVTPAMAKEVSG 266 (576)
Q Consensus 207 ~~~a~wGvdylK~D~~~~---~-----~---~~~-~~y-----~~m~~al~~~-g--r~i~lsls~~~~~~p~~a~~~~~ 266 (576)
+.+.++|||++|+|+.-. + . ... ..| +++.+++++. + ||++++=+-... ...
T Consensus 143 ~~~~~~Gid~~~~D~~e~~p~~~~~~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~Rs~~~G--------sqr 214 (308)
T cd06593 143 KPLLDMGVDCFKTDFGERIPTDVVYYDGSDGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWARSAWAG--------SQK 214 (308)
T ss_pred HHHHHhCCcEEecCCCCCCCccccccCCCCcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCccc--------ccc
Confidence 999999999999998632 1 1 111 112 3455666554 3 588887553110 123
Q ss_pred cccEEEEecCCCCChhhHHHHhh
Q 008142 267 LVNMYRITGDDWDTWGDVAAHFN 289 (576)
Q Consensus 267 ~~n~~Ris~D~~~~W~~~~~~~~ 289 (576)
|+-.| ++|...+|..+...+.
T Consensus 215 y~~~w--~GD~~s~w~~L~~~i~ 235 (308)
T cd06593 215 YPVHW--GGDCESTFEGMAESLR 235 (308)
T ss_pred CCCEE--CCCcccCHHHHHHHHH
Confidence 55455 8999999988776544
No 16
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=99.48 E-value=7.2e-14 Score=122.49 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=68.7
Q ss_pred CCCceeecCCCCccCCCCceeeEEeccCCCCCCceEECcC--C--cEEeCCCCceEEeCCCCccCCCCcEEEEec-CCcC
Q 008142 492 GVGVCLDASPKWKLTSKELRRGSFSKCKRDANQMWQLNPS--G--ALISSYSGLCATVNLVKADVGSGGIRSWIA-TGRE 566 (576)
Q Consensus 492 ~~g~CLd~~~~~~~~~G~~~~v~~w~C~g~~~Q~W~~~~~--G--~l~n~~sg~Cldv~~~~t~~~G~~v~~w~c-~g~~ 566 (576)
.+|+|||+.++++. +| + .|++|+|++..+|+|.+.+. | .|+|.+||+|||+.+.+++ +|+.|++|.| ++++
T Consensus 23 ~sg~~L~v~~~~~~-~g-~-~v~~~~~~~~~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~~~~~-~g~~v~~~~~~~~~~ 98 (105)
T PF14200_consen 23 NSGKYLDVAGGSTA-NG-T-NVQQWTCNGNDNQQWKIEPVGDGYYRIRNKNSGKVLDVAGGSTA-NGTNVQQWEYDNGSD 98 (105)
T ss_dssp TTTEEEEEGCTTCS-TT-E-BEEEEESSSSGGGEEEEEESTTSEEEEEETSTTEEEEEGGGSSS-TTEBEEEEE-STSSG
T ss_pred CCCCEEEeCCCCcC-CC-c-EEEEecCCCCcCcEEEEEEecCCeEEEEECCCCcEEEECCCCCC-CCCEEEEEeCCCCCc
Confidence 58999999988774 89 4 99999999999999999654 4 4899999999999999999 9999999999 9999
Q ss_pred cceehh
Q 008142 567 GISLML 572 (576)
Q Consensus 567 ~q~~~~ 572 (576)
+|+|.+
T Consensus 99 ~Q~W~l 104 (105)
T PF14200_consen 99 NQQWKL 104 (105)
T ss_dssp GGEEEE
T ss_pred cCEEEe
Confidence 999974
No 17
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=99.45 E-value=6.4e-13 Score=117.27 Aligned_cols=106 Identities=18% Similarity=0.235 Sum_probs=88.0
Q ss_pred CccccccCCCcCCC--CceeecCC-CCCceEE-----EeeccCCCceeecCCCCccCCCCceeeEEeccCC-CCCCceEE
Q 008142 458 EPLCLYKSRALLSS--DGEMIYKQ-QYQGKVH-----LLASKGVGVCLDASPKWKLTSKELRRGSFSKCKR-DANQMWQL 528 (576)
Q Consensus 458 ~~~Cldv~~~~ta~--~~w~c~g~-~~Q~w~~-----~~~~~~~g~CLd~~~~~~~~~G~~~~v~~w~C~g-~~~Q~W~~ 528 (576)
..+|||+.+.+... .+|.|++. .+|+|.+ ++... +++||++.+.. +| . .+.++.|++ ..+|+|.+
T Consensus 9 ~~~cL~~~~~~~~~~v~~~~c~~~~~~Q~W~~~~~g~~~~~~-~~~Cl~~~~~~---~~-~-~~~~~~c~~~~~~Q~W~~ 82 (124)
T cd00161 9 TGLCLDVNGGSDGGPVQLYPCHGNGNNQKWTLTSDGTIRIKS-SNLCLDVGGDA---PG-S-KVRLYTCSGGSDNQRWTF 82 (124)
T ss_pred CCeEEECCCCCCCCEEEEEECCCCCccCCEEEeCCCeEEEcC-CCeEEcccCCC---CC-C-EEEEEECCCCCcCCEEEE
Confidence 45899998865222 89999998 8999977 33333 68999987653 45 2 799999998 88999999
Q ss_pred CcCCcEEeCCCCceEEeCCCCccCCCCcEEEEecCCcCcceeh
Q 008142 529 NPSGALISSYSGLCATVNLVKADVGSGGIRSWIATGREGISLM 571 (576)
Q Consensus 529 ~~~G~l~n~~sg~Cldv~~~~t~~~G~~v~~w~c~g~~~q~~~ 571 (576)
.++|.|++..+++|||+.+.++ +|+.|.+|.|+++.+|.|.
T Consensus 83 ~~~~~i~~~~~~~cl~~~~~~~--~~~~v~~~~c~~~~~Q~W~ 123 (124)
T cd00161 83 NKDGTIRNLKSGKCLDVKGGNT--NGTNLILWTCDGGPNQKWK 123 (124)
T ss_pred CCCcEEEECCCCeEEeCCCCCC--CCCEEEEEeCCCCccceEe
Confidence 9889999999999999998765 6889999999999999995
No 18
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=99.42 E-value=1.1e-11 Score=137.93 Aligned_cols=228 Identities=16% Similarity=0.148 Sum_probs=120.5
Q ss_pred CChHHHHHHHHHc--CCe-EEEEeecCccccccCCCCcccccccCCCcccC--CCccccccccccccccccCCCCceeec
Q 008142 118 KGFTEVAKKVHAM--GLK-FGIHVMRGISTQAFNADTPILDTLKGGAYEDS--GRQWRAKDIGLKERACAWMQHGFMSVN 192 (576)
Q Consensus 118 ~Glk~la~~ih~~--Glk-~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~--g~~~~~~di~~~~~~~~~~~~~~~~lD 192 (576)
.|||.+++.||++ |+| .++|.+-.=.+..+.|+.+-+.+. ..|+.. |-.-+..|+..-.. ..++...+|
T Consensus 390 ~Glk~~v~~ik~k~~~vk~VyVWHAL~GYWGGV~P~~~~y~~k--~~~p~~spg~~~~~~d~a~d~i----~~~G~glv~ 463 (865)
T PLN02982 390 SGMKAFTRDLRTKFKGLDDIYVWHALCGAWGGVRPGTTHLNAK--VVPARLSPGLDGTMNDLAVDKI----VEGGIGLVH 463 (865)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEeeeccCcccCcCCCCCCCcce--EEecccCccccccCcchhhhhe----ecCceeccC
Confidence 4999999999885 454 588876433333344433211000 001110 00001111111000 012344555
Q ss_pred CCcHHHHHHHHHHHHHHHhhCccEEEecCCC-----CCCC-Ch-H----HHHHHHHHHHh-C-CCCeEEEcCCCCCCCch
Q 008142 193 TKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF-----GDDL-DI-N----EISFVSEVLKE-L-DRPIVYSLSPGTGVTPA 259 (576)
Q Consensus 193 ~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~-----~~~~-~~-~----~y~~m~~al~~-~-gr~i~lsls~~~~~~p~ 259 (576)
| ..+..|++.+.+.+++-|||+||+|... ...+ +. + -|.++...+.+ . ++-++-++|.... . .
T Consensus 464 P--~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggRv~La~ay~~al~~Sv~r~F~~ng~I~CM~~~~~-~-~ 539 (865)
T PLN02982 464 P--SQAGDFYDSMHSYLASVGITGVKVDVIHTLEYVCEEYGGRVELAKAYYDGLSESLAKNFNGTGIIASMQQCND-F-F 539 (865)
T ss_pred H--HHHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEeecccCch-h-h
Confidence 4 3457899999999999999999999643 1111 11 1 12344444443 2 3445555553211 0 1
Q ss_pred hhhhhcccccEEEEecCCCCC------hhhHH----HHhhhhhhhhhhhhhcccCCCCCCcCCCCCCcCCccCCCCCCCC
Q 008142 260 MAKEVSGLVNMYRITGDDWDT------WGDVA----AHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEG 329 (576)
Q Consensus 260 ~a~~~~~~~n~~Ris~D~~~~------W~~~~----~~~~~~~~~~~~~~~~~~g~~~~~wnDpDmL~~g~~~~~~~~~g 329 (576)
+-. .+..-+-|+|+|-++. |+... .++..+++ .++. +...|+|-||+.--.
T Consensus 540 ~~~--tk~sav~R~SDDF~p~dP~shp~g~~wlq~~Hi~~~AyN----SLl~----G~~v~PDWDMFqS~H--------- 600 (865)
T PLN02982 540 FLG--TKQISMGRVGDDFWFQDPNGDPMGVYWLQGVHMIHCAYN----SMWM----GQIIQPDWDMFQSDH--------- 600 (865)
T ss_pred hcc--CCcceeeeccccccCCCCCcCccccccccceeeeehhhh----hHhh----ccccccCchhccccC---------
Confidence 101 2345678999998742 32211 11222221 1221 235789999997431
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCeeeccCCCCCCHhHHhcc--CChhhhhhccC
Q 008142 330 PHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLI--TNPTVLEINTF 383 (576)
Q Consensus 330 ~~~~~~lT~~E~rt~~slwa~~~sPLi~g~Dl~~~~~~~l~ll--tN~eliainqd 383 (576)
.-.+.|..+-||+|+|++++|-+-+-+-+.++=| ..-.|++....
T Consensus 601 ---------~~A~fHAaaRAIsGGPIYvSD~pG~Hdf~lLk~LvlpDG~IlR~~~p 647 (865)
T PLN02982 601 ---------LCAEFHAGSRAICGGPVYVSDSVGGHDFDLLKKLVFPDGTIPRCQHY 647 (865)
T ss_pred ---------chHHHHHHHHhhcCCCEEEeeCCCCccHHHHHhhhcCCCceeccCCC
Confidence 3458899999999999999999887766555533 33344444333
No 19
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=99.40 E-value=1.2e-12 Score=115.55 Aligned_cols=103 Identities=18% Similarity=0.249 Sum_probs=84.5
Q ss_pred CccccccCCCcCCC-CceeecC-CCCCceEE-----EeeccCCCceeecCCCCccCCCCceeeEEeccCC-CCCCceEEC
Q 008142 458 EPLCLYKSRALLSS-DGEMIYK-QQYQGKVH-----LLASKGVGVCLDASPKWKLTSKELRRGSFSKCKR-DANQMWQLN 529 (576)
Q Consensus 458 ~~~Cldv~~~~ta~-~~w~c~g-~~~Q~w~~-----~~~~~~~g~CLd~~~~~~~~~G~~~~v~~w~C~g-~~~Q~W~~~ 529 (576)
..+|||+.+.+ +. +++.|++ ..+|+|.+ ++.. +++|||+.+.+. + .+.++.|++ ..+|+|.+.
T Consensus 6 ~~~Cl~~~~~~-~~v~l~~c~~~~~~Q~w~~~~~g~~~~~--~~~Cl~~~~~~~---~---~v~l~~c~~~~~~Q~W~~~ 76 (117)
T smart00458 6 TGKCLDVNGNS-NPVGLFDCHGTGGNQLWKLTSDGAIRIA--TDLCLTANGNTG---S---TVTLYSCDGDADNQYWTVN 76 (117)
T ss_pred CCccEecCCCC-ceEEEEeCCCCCccceEEEeCCCeEEec--CCccCccCCCCC---C---EEEEEECCCCCcCCEEEEC
Confidence 44799998876 33 8999999 78899977 3332 689999876421 2 799999998 899999999
Q ss_pred cCCcEEeCCCCceEEeCCCCccCCCCcEEEEecCCcCcceehh
Q 008142 530 PSGALISSYSGLCATVNLVKADVGSGGIRSWIATGREGISLML 572 (576)
Q Consensus 530 ~~G~l~n~~sg~Cldv~~~~t~~~G~~v~~w~c~g~~~q~~~~ 572 (576)
.+|.|+++++++|||+.+..++ +.+.+|.|++..+|.|..
T Consensus 77 ~~~~i~~~~~~~cl~~~~~~~~---~~~~~~~c~~~~~Q~W~~ 116 (117)
T smart00458 77 KDGTIRNPDSGLCLDVKDGNTG---TKVILWTCNGNPNQKWIF 116 (117)
T ss_pred CCeeEEeCCCCEEEecCCCCCC---ceEEEEeCCCCccccEEe
Confidence 8899999999999999875532 689999999999999974
No 20
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=99.28 E-value=9.9e-12 Score=110.54 Aligned_cols=105 Identities=19% Similarity=0.286 Sum_probs=81.7
Q ss_pred CccccccCCCcCCC---CceeecCCCCCceEE-----EeeccCCCceeecCCCCccCCCCceeeEEeccCCC-CCCceEE
Q 008142 458 EPLCLYKSRALLSS---DGEMIYKQQYQGKVH-----LLASKGVGVCLDASPKWKLTSKELRRGSFSKCKRD-ANQMWQL 528 (576)
Q Consensus 458 ~~~Cldv~~~~ta~---~~w~c~g~~~Q~w~~-----~~~~~~~g~CLd~~~~~~~~~G~~~~v~~w~C~g~-~~Q~W~~ 528 (576)
..+|||+.+..... .++.|++..+|.|.+ ++.......||++.+.. +| ..+.+++|+.. .+|+|.+
T Consensus 11 ~~~cl~~~~~~~~~~~v~l~~c~~~~~Q~w~~~~~~~i~~~~~~~~CL~~~~~~---~~--~~i~l~~C~~~~~~Q~W~~ 85 (124)
T PF00652_consen 11 SGLCLDVQGSTKNGSPVVLYPCDGSDNQLWRFDPDGQIRSNNNPNLCLDVDGSS---PG--TKIVLWPCDSNSSNQRWKF 85 (124)
T ss_dssp GGEEEEEGGSSSTTTBEEEEE--SSGGGEEEEETTSBEEETTETTEEEEESSSS---TT--EBEEEEETTTTGGGGBEEE
T ss_pred CCCeEEEcCCCCCCCEEEEEECCCCCceeEEEcCCCceeeccCcceEEEeeccC---CC--ceEEEeeccCCccCCeEEE
Confidence 45899999222222 899999988899976 44444345699998765 45 38999999875 4599999
Q ss_pred CcCCcEEeCCCCceEEeCCCCccCCCCcEEEEecCCcCccee
Q 008142 529 NPSGALISSYSGLCATVNLVKADVGSGGIRSWIATGREGISL 570 (576)
Q Consensus 529 ~~~G~l~n~~sg~Cldv~~~~t~~~G~~v~~w~c~g~~~q~~ 570 (576)
.+++.|+|..+++|||+.+.. +++.|.++.|++..+|+|
T Consensus 86 ~~~~~i~n~~s~~cL~~~~~~---~~~~l~~~~c~~~~~Q~W 124 (124)
T PF00652_consen 86 DPDGRIRNKNSGLCLDVKGGS---DGNPLVLWPCNGSPNQQW 124 (124)
T ss_dssp ETTSBEEETTTTEEEEEGGGS---TTEBEEEEE-TSSGGGBE
T ss_pred cCCeeEEeCCCCEEEEecCCC---CCCEEEEEECCCCccccC
Confidence 988999999999999998765 688999999999999998
No 21
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=99.23 E-value=5.5e-10 Score=118.14 Aligned_cols=195 Identities=18% Similarity=0.203 Sum_probs=124.9
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHH
Q 008142 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (576)
Q Consensus 50 ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~ 129 (576)
-+++++++.++.+.+. ..-++.|.||..|+. .++.+..|++|||+ .+.|++.+|+
T Consensus 21 ~~~~~v~~~~~~~~~~--~iP~d~i~lD~~~~~-----------------~~~~f~~d~~~fPd------p~~m~~~l~~ 75 (339)
T cd06604 21 YPEEEVREIADEFRER--DIPCDAIYLDIDYMD-----------------GYRVFTWDKERFPD------PKELIKELHE 75 (339)
T ss_pred CCHHHHHHHHHHHHHh--CCCcceEEECchhhC-----------------CCCceeeccccCCC------HHHHHHHHHH
Confidence 4889999999876432 223589999999985 25678899999995 9999999999
Q ss_pred cCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHH
Q 008142 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY 209 (576)
Q Consensus 130 ~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~ 209 (576)
+|+|+-+|+.|++... ++.+.+.+... ..+..++.........+.++....+|+|||++++|+.+..+.+
T Consensus 76 ~g~~~~~~~~P~v~~~---~~~~~~~e~~~-------~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06604 76 QGFKVVTIIDPGVKVD---PGYDVYEEGLE-------NDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKF 145 (339)
T ss_pred CCCEEEEEEeCceeCC---CCChHHHHHHH-------CCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHH
Confidence 9999999999987532 22333322100 0111222111111112334444679999999999998888888
Q ss_pred HhhCccEEEecCCCCC-------------C--C------ChH----HH-----HHHHHHHHhC---CCCeEEEcCCCCCC
Q 008142 210 AEWGVDFVKHDCVFGD-------------D--L------DIN----EI-----SFVSEVLKEL---DRPIVYSLSPGTGV 256 (576)
Q Consensus 210 a~wGvdylK~D~~~~~-------------~--~------~~~----~y-----~~m~~al~~~---gr~i~lsls~~~~~ 256 (576)
.+.|||++|+|+.-+. . . ... .| ++..+++++. .||++++=+....
T Consensus 146 ~~~Gvdg~w~D~~Ep~~~~~~~~~~~p~~~~~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G- 224 (339)
T cd06604 146 VDLGVDGIWNDMNEPAVFNTPGKTTMPRDAVHRLDGGGGTHEEVHNVYGLLMARATYEGLKKARPNERPFILTRAGYAG- 224 (339)
T ss_pred hhCCCceEeecCCCccccCCcccccCCccceeeCCCCCCcHhHhcchhhHHHHHHHHHHHHHhCCCCCcEEEEeccccc-
Confidence 8999999999975311 0 0 001 12 2344555444 3788876653111
Q ss_pred CchhhhhhcccccEEEEecCCCCChhhHHHHhh
Q 008142 257 TPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFN 289 (576)
Q Consensus 257 ~p~~a~~~~~~~n~~Ris~D~~~~W~~~~~~~~ 289 (576)
...|+- =-++|...+|+.+...+.
T Consensus 225 -------~qry~~--~W~GD~~ssW~~L~~~i~ 248 (339)
T cd06604 225 -------IQRYAA--VWTGDNRSSWEHLRLSIP 248 (339)
T ss_pred -------cccccc--ccCCcccCCHHHHHHHHH
Confidence 123442 257899899998776543
No 22
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=99.21 E-value=4.8e-10 Score=122.65 Aligned_cols=215 Identities=18% Similarity=0.192 Sum_probs=125.3
Q ss_pred CCCCCCceEe--ccccccCcCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCC
Q 008142 31 VRASSPPRGW--NSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDP 108 (576)
Q Consensus 31 ~~~~~pPmGW--nSW~~~~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~ 108 (576)
+.++.||. | --|.+-...-+++++++.++.+.+. ...++.++||+.|+.. ++.+..|+
T Consensus 20 G~~~~pP~-walG~~~~~~~~~~~~~v~~~i~~~~~~--~iP~d~~~iD~~~~~~-----------------~~~f~~d~ 79 (441)
T PF01055_consen 20 GRPPLPPR-WALGFWQSRWGYYNQDEVREVIDRYRSN--GIPLDVIWIDDDYQDG-----------------YGDFTWDP 79 (441)
T ss_dssp SSS----G-GGGSEEEEESTBTSHHHHHHHHHHHHHT--T--EEEEEE-GGGSBT-----------------TBTT-B-T
T ss_pred CCCCCCch-hhhceEeecCcCCCHHHHHHHHHHHHHc--CCCccceecccccccc-----------------cccccccc
Confidence 56777886 4 2222222335789999999876542 3446899999999863 46889999
Q ss_pred CCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCc
Q 008142 109 DRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGF 188 (576)
Q Consensus 109 ~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~ 188 (576)
++||+ ++.+++.+|++|+|+++|+.|++..... ..+.+.+... ..+..++-........+.++..
T Consensus 80 ~~FPd------~~~~~~~l~~~G~~~~~~~~P~v~~~~~--~~~~~~~~~~-------~~~~v~~~~g~~~~~~~w~g~~ 144 (441)
T PF01055_consen 80 ERFPD------PKQMIDELHDQGIKVVLWVHPFVSNDSP--DYENYDEAKE-------KGYLVKNPDGSPYIGRVWPGKG 144 (441)
T ss_dssp TTTTT------HHHHHHHHHHTT-EEEEEEESEEETTTT--B-HHHHHHHH-------TT-BEBCTTSSB-EEEETTEEE
T ss_pred ccccc------hHHHHHhHhhCCcEEEEEeecccCCCCC--cchhhhhHhh-------cCceeecccCCcccccccCCcc
Confidence 99995 9999999999999999999998754321 0112211100 0111111111111112233346
Q ss_pred eeecCCcHHHHHHHHHHHHHHHhh-CccEEEecCCCCCC----------------CCh----HHH-----HHHHHHHHh-
Q 008142 189 MSVNTKLGAGRAFLRSLYQQYAEW-GVDFVKHDCVFGDD----------------LDI----NEI-----SFVSEVLKE- 241 (576)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~w-GvdylK~D~~~~~~----------------~~~----~~y-----~~m~~al~~- 241 (576)
..+|+|||++++|+...++.+.+. |||++|+|+.-... ... ..| ++..+++++
T Consensus 145 ~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~ 224 (441)
T PF01055_consen 145 GFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPSSFDSNNTLPEDAVHHDGYSGYEMHNLYGLLYAKATYEALREI 224 (441)
T ss_dssp EEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTBSSTTTBSBCTTEECTTECEHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred cccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCcccccccccCcccceecCCCCchheeccccccchhhhhhhhhhc
Confidence 789999999999998888887777 99999999842210 000 112 235555554
Q ss_pred --CCCCeEEEcCCCCCCCchhhhhhcccccEEEEecCCCCChhhHHHHhhh
Q 008142 242 --LDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNV 290 (576)
Q Consensus 242 --~gr~i~lsls~~~~~~p~~a~~~~~~~n~~Ris~D~~~~W~~~~~~~~~ 290 (576)
..||++++-+... . ...|+.. -++|+..+|..+...+..
T Consensus 225 ~~~~r~~~~sRs~~~-------G-~qr~~~~--w~GD~~s~w~~L~~~i~~ 265 (441)
T PF01055_consen 225 DPNKRPFIFSRSGWA-------G-SQRYGGH--WSGDNSSSWDGLRSSIPA 265 (441)
T ss_dssp STTSC-EEEESSEET-------T-GGGTCEE--EECSSBSSHHHHHHHHHH
T ss_pred cCCCCcceeecccCC-------C-CCcccee--ecccccccHHHHHHHHHH
Confidence 4578888766321 1 1345555 488999999988776543
No 23
>PRK10658 putative alpha-glucosidase; Provisional
Probab=99.19 E-value=7.3e-10 Score=126.23 Aligned_cols=213 Identities=21% Similarity=0.269 Sum_probs=137.8
Q ss_pred CCCCCCce---E-eccccccCcCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCcee
Q 008142 31 VRASSPPR---G-WNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIP 106 (576)
Q Consensus 31 ~~~~~pPm---G-WnSW~~~~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~ 106 (576)
+.++.||. | |.|. .|..+.+|+++++.++.+++. ..-.+.|.+|++|+... .++.++.
T Consensus 258 Grp~lpP~WalG~w~s~-~~~~~~~e~~v~~~~~~~r~~--~iP~d~i~lD~~w~~~~---------------~~~~f~w 319 (665)
T PRK10658 258 GRPALPPAWSFGLWLTT-SFTTNYDEATVNSFIDGMAER--DLPLHVFHFDCFWMKEF---------------QWCDFEW 319 (665)
T ss_pred CCCCCCchhhhheeeec-ccccCCCHHHHHHHHHHHHHc--CCCceEEEEchhhhcCC---------------ceeeeEE
Confidence 55666674 3 4443 244456899999999877542 22358999999998631 3678999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCC
Q 008142 107 DPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQH 186 (576)
Q Consensus 107 d~~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~ 186 (576)
|+++||+ .+.|+++||++|+|+-+|+.|++. .+++++.+... ..|..++.......-...++
T Consensus 320 d~~~FPd------p~~mi~~L~~~G~k~~~~i~P~i~-----~~s~~f~e~~~-------~gy~vk~~~G~~~~~~~W~g 381 (665)
T PRK10658 320 DPRTFPD------PEGMLKRLKAKGLKICVWINPYIA-----QKSPLFKEGKE-------KGYLLKRPDGSVWQWDKWQP 381 (665)
T ss_pred ChhhCCC------HHHHHHHHHHCCCEEEEeccCCcC-----CCchHHHHHHH-------CCeEEECCCCCEeeeeecCC
Confidence 9999995 999999999999999999999874 24454432110 11222221111111111234
Q ss_pred CceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCC--------CCCCChH----HH-----HHHHHHHHh-C--CCCe
Q 008142 187 GFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF--------GDDLDIN----EI-----SFVSEVLKE-L--DRPI 246 (576)
Q Consensus 187 ~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~--------~~~~~~~----~y-----~~m~~al~~-~--gr~i 246 (576)
+...+|+|||++++|+.+.++.+.+.|||.+|.||.- .++.+.. .| ++..+++++ . .|++
T Consensus 382 ~~~~~Dftnp~ar~W~~~~~~~l~d~Gvdgfw~D~gE~~p~d~~~~~G~~~~~~hN~Y~~l~~ka~~e~l~~~~~~~r~~ 461 (665)
T PRK10658 382 GMAIVDFTNPDACKWYADKLKGLLDMGVDCFKTDFGERIPTDVVWFDGSDPQKMHNYYTYLYNKTVFDVLKETRGEGEAV 461 (665)
T ss_pred CceeecCCCHHHHHHHHHHHHHHHhcCCcEEEecCCceeeccceecCCCcHHHhcchhHHHHHHHHHHHHHHhcCCCceE
Confidence 4568999999999999988888999999999999742 1111221 12 345555655 3 3678
Q ss_pred EEEcCCCCCCCchhhhhhcccccEEEEecCCCCChhhHHHHhh
Q 008142 247 VYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFN 289 (576)
Q Consensus 247 ~lsls~~~~~~p~~a~~~~~~~n~~Ris~D~~~~W~~~~~~~~ 289 (576)
+++=|.... ...|+-. =++|+..+|+.+...+.
T Consensus 462 i~tRs~~aG--------sQry~~~--WsGD~~stw~~l~~si~ 494 (665)
T PRK10658 462 LFARSATVG--------GQQFPVH--WGGDCYSNYESMAESLR 494 (665)
T ss_pred EEEecccCC--------CCCCCCE--ECCCCCCCHHHHHHHHH
Confidence 876553110 0234422 46899999998876543
No 24
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=99.15 E-value=1.7e-09 Score=113.48 Aligned_cols=196 Identities=17% Similarity=0.254 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHH
Q 008142 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (576)
Q Consensus 50 ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~ 129 (576)
-++++++++++-+.+. ....+.|.||..|.... .++.+..|++|||+ ++.|+++||+
T Consensus 21 ~~~~ev~~~~~~~~~~--~iP~d~i~lD~~~~~~~---------------~~~~f~~d~~~FPd------p~~mi~~L~~ 77 (319)
T cd06591 21 KTQEELLDVAKEYRKR--GIPLDVIVQDWFYWPKQ---------------GWGEWKFDPERFPD------PKAMVRELHE 77 (319)
T ss_pred CCHHHHHHHHHHHHHh--CCCccEEEEechhhcCC---------------CceeEEEChhhCCC------HHHHHHHHHH
Confidence 4899999999876442 33468999998886531 24589999999995 9999999999
Q ss_pred cCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHH-HHHH
Q 008142 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRS-LYQQ 208 (576)
Q Consensus 130 ~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~-~~~~ 208 (576)
+|+|+-+++.|++.. +++.+.+... ..|..++....... .|.++....+|+|||++++|+.. +.+.
T Consensus 78 ~G~kv~~~i~P~v~~-----~~~~y~e~~~-------~g~~v~~~~g~~~~-~~w~g~~~~~Dftnp~a~~w~~~~~~~~ 144 (319)
T cd06591 78 MNAELMISIWPTFGP-----ETENYKEMDE-------KGYLIKTDRGPRVT-MQFGGNTRFYDATNPEAREYYWKQLKKN 144 (319)
T ss_pred CCCEEEEEecCCcCC-----CChhHHHHHH-------CCEEEEcCCCCeee-eeCCCCccccCCCCHHHHHHHHHHHHHH
Confidence 999999999998742 3333322110 11222221111111 23344456899999999998754 4456
Q ss_pred HHhhCccEEEecCCCCC----C-------C----Ch---HHH-----HHHHHHHHhC---CCCeEEEcCCCCCCCchhhh
Q 008142 209 YAEWGVDFVKHDCVFGD----D-------L----DI---NEI-----SFVSEVLKEL---DRPIVYSLSPGTGVTPAMAK 262 (576)
Q Consensus 209 ~a~wGvdylK~D~~~~~----~-------~----~~---~~y-----~~m~~al~~~---gr~i~lsls~~~~~~p~~a~ 262 (576)
+.+.|||++|+|+.-.. . + .. ..| ++..+++++. .||++++=+-.. -
T Consensus 145 ~~~~Gvdg~w~D~~Ep~~~~~~~~~~~~~~~~~~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~f~~sRs~~~-------G 217 (319)
T cd06591 145 YYDKGVDAWWLDAAEPEYSVYDFGLDNYRYHLGPGLEVGNAYPLMHAKGIYEGQRAAGDEKRVVILTRSAWA-------G 217 (319)
T ss_pred hhcCCCcEEEecCCCCCccCCcccccCcccCCCCchhhhhhhHHHHHHHHHHHHHHhCCCCCceEEEecccc-------c
Confidence 88999999999985311 0 0 00 112 2344555544 478888655311 0
Q ss_pred hhcccccEEEEecCCCCChhhHHHHhhh
Q 008142 263 EVSGLVNMYRITGDDWDTWGDVAAHFNV 290 (576)
Q Consensus 263 ~~~~~~n~~Ris~D~~~~W~~~~~~~~~ 290 (576)
...|+.+. =++|...+|+.+...+..
T Consensus 218 -sqry~~~~-W~GD~~s~w~~L~~~i~~ 243 (319)
T cd06591 218 -SQRYGALV-WSGDIDSSWETLRRQIAA 243 (319)
T ss_pred -cccccCce-eCCCccccHHHHHHHHHH
Confidence 02344222 248988999987765543
No 25
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.14 E-value=7.6e-09 Score=109.45 Aligned_cols=230 Identities=14% Similarity=0.139 Sum_probs=129.8
Q ss_pred CCCCCceEec--cccccCcCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccC-----CccccCCCccccC-CCCC
Q 008142 32 RASSPPRGWN--SYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVK-----GAYVDSLGFDVID-EWGR 103 (576)
Q Consensus 32 ~~~~pPmGWn--SW~~~~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~-----g~~~~~~~~~~~d-~~G~ 103 (576)
.++.||. |. -|.+-....++++|+++++-+.+. ..-++.|.||+ |+..... -+|....+. .+ .+++
T Consensus 2 ~p~lpP~-walG~~~sr~~Y~~~~ev~~v~~~~~~~--~iP~d~i~lD~-W~~~~~~~~w~d~~y~~~~~~--~~~~~~~ 75 (340)
T cd06597 2 KPELLPK-WAFGLWMSANEWDTQAEVMRQMDAHEEH--GIPVTVVVIEQ-WSDEATFYVFNDAQYTPKDGG--APLSYDD 75 (340)
T ss_pred CCCCCch-HHhhhhhhccCCCCHHHHHHHHHHHHHc--CCCeeEEEEec-ccCcceeeeeccchhcccccC--Ccceecc
Confidence 4556664 33 333333346899999999876432 22258999995 8863210 001000000 00 1334
Q ss_pred ceeCC-CCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccC-CCcccccccccccccc
Q 008142 104 MIPDP-DRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERAC 181 (576)
Q Consensus 104 ~~~d~-~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~-g~~~~~~di~~~~~~~ 181 (576)
...++ +|||+ ++.|+++||++|+|+-+|+.|++........... ..|.+. -..+..++....+...
T Consensus 76 ~~f~~~~~FPd------p~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~------~~~~~~~~~g~~vk~~~G~~~~~ 143 (340)
T cd06597 76 FSFPVEGRWPN------PKGMIDELHEQGVKVLLWQIPIIKLRPHPHGQAD------NDEDYAVAQNYLVQRGVGKPYRI 143 (340)
T ss_pred cccCccccCCC------HHHHHHHHHHCCCEEEEEecCccccccccccccc------hhHHHHHHCCEEEEcCCCCcccc
Confidence 44443 68995 9999999999999999999998853211000000 001000 0112222221111111
Q ss_pred -ccCCCCceeecCCcHHHHHHHHHHHHHHH-hhCccEEEecCCC---CC------CCCh--------HHH-HHHHHHHHh
Q 008142 182 -AWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVF---GD------DLDI--------NEI-SFVSEVLKE 241 (576)
Q Consensus 182 -~~~~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~---~~------~~~~--------~~y-~~m~~al~~ 241 (576)
.+.++....+|+|+|++++|..+.++.+. +.|||.+|+|+-- .. .... ..| +++.+++++
T Consensus 144 ~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~~~Gidg~w~D~~E~~~~~~~~~~~g~~~~~~hN~y~~~~~~~~~e~~~~ 223 (340)
T cd06597 144 PGQWFPDSLMLDFTNPEAAQWWMEKRRYLVDELGIDGFKTDGGEHVWGRDLHFRDGRRGDEMRNTYPNHYVRAYNDFLRR 223 (340)
T ss_pred ccccCCCceeecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCccCCCCceecCCCcHHHhhcccHHHHHHHHHHHHHh
Confidence 23445557899999999999988887766 7999999999641 11 1000 112 345556665
Q ss_pred CC-CCeEEEcCCCCCCCchhhhhhcccccEEEEecCCCCChhhHHHHhh
Q 008142 242 LD-RPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFN 289 (576)
Q Consensus 242 ~g-r~i~lsls~~~~~~p~~a~~~~~~~n~~Ris~D~~~~W~~~~~~~~ 289 (576)
.+ ||++++=|.... ...|+=.| ++|...+|+.+...+.
T Consensus 224 ~~~r~filtRs~~~G--------sqry~~~W--sGD~~s~W~~L~~~i~ 262 (340)
T cd06597 224 AKKDGVTFSRAGYTG--------AQAHGIFW--AGDENSTFGAFRWSVF 262 (340)
T ss_pred ccCCcEEEEecccCc--------cCCCccee--cCCCCCCHHHHHHHHH
Confidence 55 688876653111 12344333 8899999998876544
No 26
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.12 E-value=2.7e-09 Score=111.84 Aligned_cols=201 Identities=12% Similarity=0.099 Sum_probs=126.8
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHH
Q 008142 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (576)
Q Consensus 50 ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~ 129 (576)
-+++++++.++-+.+. ..-.+.|.||.+|+..... ...+|.++.|++|||+ .+.|+++||+
T Consensus 21 ~~~~~v~~~~~~~~~~--~iP~d~i~lD~~w~~~~~~-----------~~~~~~f~wd~~~FPd------p~~mi~~L~~ 81 (317)
T cd06598 21 RNWQEVDDTIKTLREK--DFPLDAAILDLYWFGKDID-----------KGHMGNLDWDRKAFPD------PAGMIADLAK 81 (317)
T ss_pred CCHHHHHHHHHHHHHh--CCCceEEEEechhhcCccc-----------CCceeeeEeccccCCC------HHHHHHHHHH
Confidence 4789999999876432 2336899999999864210 1246889999999996 9999999999
Q ss_pred cCCeEEEEeecCccccccCCCCcccccccCCCcccCCCcccccccc-ccccccccCCCCceeecCCcHHHHHHHHHHHHH
Q 008142 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIG-LKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQ 208 (576)
Q Consensus 130 ~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~-~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~ 208 (576)
+|+|+-+|+.|++.. +++.+.+.... | +...+.. .......+.++....+|+|||++++|+.+.++.
T Consensus 82 ~G~k~~~~v~P~v~~-----~~~~y~e~~~~-----g--~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~ 149 (317)
T cd06598 82 KGVKTIVITEPFVLK-----NSKNWGEAVKA-----G--ALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKK 149 (317)
T ss_pred cCCcEEEEEcCcccC-----CchhHHHHHhC-----C--CEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHH
Confidence 999999999998743 33433221101 1 1111100 001111223344568999999999999888888
Q ss_pred HHhhCccEEEecCCCCC-----C--C--Ch---H-HH-----HHHHHHHHh---CCCCeEEEcCCCCCCCchhhhhhccc
Q 008142 209 YAEWGVDFVKHDCVFGD-----D--L--DI---N-EI-----SFVSEVLKE---LDRPIVYSLSPGTGVTPAMAKEVSGL 267 (576)
Q Consensus 209 ~a~wGvdylK~D~~~~~-----~--~--~~---~-~y-----~~m~~al~~---~gr~i~lsls~~~~~~p~~a~~~~~~ 267 (576)
+.+.|||++|.|++-.. . . .. . .| +++.+++++ -.||++++=+.... ...|
T Consensus 150 ~~~~Gvdg~w~D~~Ep~~~~~~~~~~~g~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~~~~~Rs~~~G--------sqry 221 (317)
T cd06598 150 LIDQGVTGWWGDLGEPEVHPPDMCHHKGKAAEVHNIYGHLWAKSIYEGYQQNYPNERPFILMRAGFAG--------SQRY 221 (317)
T ss_pred hhhCCccEEEecCCCccccCCccccCCCcHhHHhhHHHHHHHHHHHHHHHHhcCCCCeEEEEecCcCc--------cccC
Confidence 99999999999987421 0 0 00 1 12 233444543 24688876553110 0223
Q ss_pred ccEEEEecCCCCChhhHHHHhhh
Q 008142 268 VNMYRITGDDWDTWGDVAAHFNV 290 (576)
Q Consensus 268 ~n~~Ris~D~~~~W~~~~~~~~~ 290 (576)
+.+ -=++|+..+|+.+...+..
T Consensus 222 ~~~-~WsGD~~s~W~~L~~~i~~ 243 (317)
T cd06598 222 GVI-PWSGDVGRTWDGLKSQPNA 243 (317)
T ss_pred cCC-ccCCCCcCCHHHHHHHHHH
Confidence 211 1257999999988776543
No 27
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=99.12 E-value=7.4e-09 Score=108.53 Aligned_cols=195 Identities=16% Similarity=0.245 Sum_probs=118.5
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCC-----CceeCCCCCCCCCCCCChHHHHH
Q 008142 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWG-----RMIPDPDRWPSSRGGKGFTEVAK 125 (576)
Q Consensus 51 se~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G-----~~~~d~~kFP~~~~~~Glk~la~ 125 (576)
|+++|+++++-+.+. ..-.+.|.|| .|+.... +..| .++.|+++||+ ++.|++
T Consensus 21 s~~~v~~~~~~~~~~--~iP~d~i~ld-dw~~~~~-------------~~~g~~~~~~f~~d~~~FPd------p~~mi~ 78 (317)
T cd06594 21 GTDKVLEALEKARAA--GVKVAGLWLQ-DWTGRRE-------------TSFGDRLWWNWEWDPERYPG------LDELIE 78 (317)
T ss_pred CHHHHHHHHHHHHHc--CCCeeEEEEc-cccCccc-------------ccccceeeeeeEEChhhCCC------HHHHHH
Confidence 999999999876432 2235889999 5854210 1223 47899999995 999999
Q ss_pred HHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccC-CCccccccccccccccccCCCCceeecCCcHHHHHHHHH
Q 008142 126 KVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRS 204 (576)
Q Consensus 126 ~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~-g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~ 204 (576)
+||++|+|+-+++.|++.. +++-. |.+. -..|..++....+....+.++....+|+|+|++++|..+
T Consensus 79 ~Lh~~G~~~~~~i~P~v~~-----~~~~~-------y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 146 (317)
T cd06594 79 ELKARGIRVLTYINPYLAD-----DGPLY-------YEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQ 146 (317)
T ss_pred HHHHCCCEEEEEecCceec-----CCchh-------HHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHH
Confidence 9999999999999998743 11110 1110 011222221111111223333346899999999999977
Q ss_pred HHHHH-HhhCccEEEecCCCC--------CCCCh----HHH-----HHHHHHHHhC---CCCeEEEcCCCCCCCchhhhh
Q 008142 205 LYQQY-AEWGVDFVKHDCVFG--------DDLDI----NEI-----SFVSEVLKEL---DRPIVYSLSPGTGVTPAMAKE 263 (576)
Q Consensus 205 ~~~~~-a~wGvdylK~D~~~~--------~~~~~----~~y-----~~m~~al~~~---gr~i~lsls~~~~~~p~~a~~ 263 (576)
.++.+ .+.|||.+|.|+--. .+.+. ..| ++..+++++. .||++++=|... -
T Consensus 147 ~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~~g~~~~~~hN~y~~~~~~~~~~~~~~~~~~~r~fvltRs~~~-------G- 218 (317)
T cd06594 147 VIKEMLLDLGLSGWMADFGEYLPFDAVLHSGEDAATMHNRYPELWAKLNREAVEEAGKTGDILFFMRSGFT-------G- 218 (317)
T ss_pred HHHHHhhhcCCcEEEecCCCCCCCcceecCCCCHHHHhhHHHHHHHHHHHHHHHHhccCCCeEEEEccccc-------c-
Confidence 66655 889999999997421 11111 113 2334455443 467887765311 0
Q ss_pred hcccccEEEEecCCCCChhh---HHHHh
Q 008142 264 VSGLVNMYRITGDDWDTWGD---VAAHF 288 (576)
Q Consensus 264 ~~~~~n~~Ris~D~~~~W~~---~~~~~ 288 (576)
..+|+.+.+ ++|...+|+. +...+
T Consensus 219 sqry~~~~W-sGD~~s~W~~~~~L~~~i 245 (317)
T cd06594 219 SQKYSTLFW-AGDQMVSWDAHDGLKSVV 245 (317)
T ss_pred ccccccccc-CCCCCCCCcCcccHHHHH
Confidence 134554323 6899889983 55443
No 28
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=99.10 E-value=5.2e-09 Score=109.69 Aligned_cols=195 Identities=15% Similarity=0.181 Sum_probs=124.5
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHH
Q 008142 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (576)
Q Consensus 50 ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~ 129 (576)
-|++++++.++-+.+. ..-.+.|.||..|+. .++.+..|+++||+ .+.|++.+|+
T Consensus 21 ~~~~~v~~~~~~~~~~--~iP~d~i~lD~~~~~-----------------~~~~f~~d~~~FPd------p~~~i~~l~~ 75 (317)
T cd06600 21 YPQDKVVEVVDIMQKE--GFPYDVVFLDIHYMD-----------------SYRLFTWDPYRFPE------PKKLIDELHK 75 (317)
T ss_pred CCHHHHHHHHHHHHHc--CCCcceEEEChhhhC-----------------CCCceeechhcCCC------HHHHHHHHHH
Confidence 4899999999876442 233689999999974 24678899999995 9999999999
Q ss_pred cCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHH
Q 008142 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY 209 (576)
Q Consensus 130 ~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~ 209 (576)
+|+|+-+|+.|++... ++.+.+.+.. + ..+..++....+....+.++....+|+|||++++|+.+.++.+
T Consensus 76 ~g~k~~~~~~P~i~~~---~~~~~~~~~~-----~--~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~ 145 (317)
T cd06600 76 RNVKLVTIVDPGIRVD---QNYSPFLSGM-----D--KGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEW 145 (317)
T ss_pred CCCEEEEEeeccccCC---CCChHHHHHH-----H--CCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHH
Confidence 9999999999998521 1122221100 0 1112222111111122334444579999999999998888776
Q ss_pred H-hhCccEEEecCCCCCCC-ChH-HH-----HHHHHHHHh---CCCCeEEEcCCCCCCCchhhhhhcccccEEEEecCCC
Q 008142 210 A-EWGVDFVKHDCVFGDDL-DIN-EI-----SFVSEVLKE---LDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDW 278 (576)
Q Consensus 210 a-~wGvdylK~D~~~~~~~-~~~-~y-----~~m~~al~~---~gr~i~lsls~~~~~~p~~a~~~~~~~n~~Ris~D~~ 278 (576)
. +.|||++|+|+.-...+ +.. .| .+..+++++ -.||++++=+..... ..|+ + --++|..
T Consensus 146 ~~~~gvdg~w~D~~Ep~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~--------qry~-~-~W~GD~~ 215 (317)
T cd06600 146 LNSQGVDGIWLDMNEPSDFEKVHNLYGLYEAMATAEGFRTSHPRNRIFILTRSGFAGS--------QKYA-A-IWTGDNT 215 (317)
T ss_pred hhcCCCceEEeeCCCCccHHHhcchhhHHHHHHHHHHHHHhcCCCCceEEEecccccc--------CCcc-c-eECCccc
Confidence 5 99999999998532211 111 12 223344443 247888877642110 2344 2 3678998
Q ss_pred CChhhHHHHhh
Q 008142 279 DTWGDVAAHFN 289 (576)
Q Consensus 279 ~~W~~~~~~~~ 289 (576)
.+|+.+...+.
T Consensus 216 s~W~~L~~~i~ 226 (317)
T cd06600 216 ASWDDLKLSIP 226 (317)
T ss_pred ccHHHHHHHHH
Confidence 99998776544
No 29
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.09 E-value=3.8e-09 Score=110.76 Aligned_cols=198 Identities=16% Similarity=0.149 Sum_probs=124.3
Q ss_pred CCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHH
Q 008142 49 TISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVH 128 (576)
Q Consensus 49 ~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih 128 (576)
..++++|++.++.+.+. ..-++.|.||.+|+... + .....+..|+++||+ ++.|+++||
T Consensus 25 ~~~q~~v~~~~~~~r~~--~iP~d~i~ld~~~~~~~--~-----------~~~~~f~~d~~~FPd------p~~mi~~L~ 83 (317)
T cd06599 25 PDAQEALLEFIDKCREH--DIPCDSFHLSSGYTSIE--G-----------GKRYVFNWNKDRFPD------PAAFVAKFH 83 (317)
T ss_pred ccHHHHHHHHHHHHHHc--CCCeeEEEEeccccccC--C-----------CceeeeecCcccCCC------HHHHHHHHH
Confidence 45689999999876432 23368999999998631 0 123457889999995 999999999
Q ss_pred HcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCcccccccccc-ccccccCCCCceeecCCcHHHHHHHHHHH-
Q 008142 129 AMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLK-ERACAWMQHGFMSVNTKLGAGRAFLRSLY- 206 (576)
Q Consensus 129 ~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~-~~~~~~~~~~~~~lD~t~p~~~~~~~~~~- 206 (576)
++|+|+-+|+.|++.. +++.+.+... ..|..++.... .....|.++....+|+|+|++++|+.+.+
T Consensus 84 ~~g~k~~~~i~P~i~~-----~~~~y~e~~~-------~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 151 (317)
T cd06599 84 ERGIRLAPNIKPGLLQ-----DHPRYKELKE-------AGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVK 151 (317)
T ss_pred HCCCEEEEEeCCcccC-----CCHHHHHHHH-------CCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHH
Confidence 9999999999998742 2333322110 11222221100 01112333434579999999999997777
Q ss_pred HHHHhhCccEEEecCCCCC-----C--------CChH----HH-----HHHHHHHHhC---CCCeEEEcCCCCCCCchhh
Q 008142 207 QQYAEWGVDFVKHDCVFGD-----D--------LDIN----EI-----SFVSEVLKEL---DRPIVYSLSPGTGVTPAMA 261 (576)
Q Consensus 207 ~~~a~wGvdylK~D~~~~~-----~--------~~~~----~y-----~~m~~al~~~---gr~i~lsls~~~~~~p~~a 261 (576)
+.+.+.|||++|+|++-.. . .... .| ++..+++.+. .||++++=+-...
T Consensus 152 ~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~g~~~~~~~~~n~y~~l~~~a~~~~~~~~~~~~r~f~ltRs~~~G------ 225 (317)
T cd06599 152 EALLDLGIDSTWNDNNEYEIWDDDAVCDGFGKPGTIGELRPVQPNLMARASHEAQAEHYPNRRPYIVSRSGFAG------ 225 (317)
T ss_pred HHHhcCCCcEEEecCCCCccCCCcceecCCCCccchhhcccchHHHHHHHHHHHHHHhCCCCCcEEEEcCCccc------
Confidence 6788999999999986321 0 0101 11 2344555443 3688876553111
Q ss_pred hhhcccccEEEEecCCCCChhhHHHHhh
Q 008142 262 KEVSGLVNMYRITGDDWDTWGDVAAHFN 289 (576)
Q Consensus 262 ~~~~~~~n~~Ris~D~~~~W~~~~~~~~ 289 (576)
...|+ .--++|+..+|+.+...+.
T Consensus 226 --~qry~--~~WsGD~~s~W~~L~~~i~ 249 (317)
T cd06599 226 --IQRYA--QTWSGDNRTSWKTLRYNIA 249 (317)
T ss_pred --ccCCc--CeeCCCcccCHHHHHHHHH
Confidence 12342 2357899999998876544
No 30
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=99.06 E-value=7.1e-09 Score=109.64 Aligned_cols=198 Identities=16% Similarity=0.083 Sum_probs=124.3
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCCh--HHHHHHH
Q 008142 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGF--TEVAKKV 127 (576)
Q Consensus 50 ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Gl--k~la~~i 127 (576)
-++++|++.++.+.+. ..-.+.|.||..|+. .++.+..|+++||+ . +.|+++|
T Consensus 21 ~~~~~v~~~~~~~r~~--~iP~d~i~lD~~~~~-----------------~~~~f~~d~~~FPd------p~~~~mi~~L 75 (339)
T cd06602 21 KNVDEVKEVVENMRAA--GIPLDVQWNDIDYMD-----------------RRRDFTLDPVRFPG------LKMPEFVDEL 75 (339)
T ss_pred CCHHHHHHHHHHHHHh--CCCcceEEECccccc-----------------CccceecccccCCC------ccHHHHHHHH
Confidence 4789999999876442 223588999999975 35789999999996 6 9999999
Q ss_pred HHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHH
Q 008142 128 HAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQ 207 (576)
Q Consensus 128 h~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~ 207 (576)
|++|+|+-+|+.|++......++.+.+.+.. ...+..++.........+.++....+|+|+|++++|+...++
T Consensus 76 ~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~-------~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 76 HANGQHYVPILDPAISANEPTGSYPPYDRGL-------EMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHCCCEEEEEEeCccccCcCCCCCHHHHHHH-------HCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 9999999999999875321111222221110 011222221111111223344445799999999999988777
Q ss_pred H-HHhhCccEEEecCCCCCCC-ChH-HH-----HHHHHHHHh-C-CCCeEEEcCCCCCCCchhhhhhcccccEEEEecCC
Q 008142 208 Q-YAEWGVDFVKHDCVFGDDL-DIN-EI-----SFVSEVLKE-L-DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDD 277 (576)
Q Consensus 208 ~-~a~wGvdylK~D~~~~~~~-~~~-~y-----~~m~~al~~-~-gr~i~lsls~~~~~~p~~a~~~~~~~n~~Ris~D~ 277 (576)
. +.+.|||++|.|+.-+..+ ... .| ++..+++++ . .||++++=+.... ...|+- =-++|+
T Consensus 149 ~~~~~~Gvdg~w~D~~Ep~~~~~~hN~y~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G--------~qry~~--~w~GD~ 218 (339)
T cd06602 149 DFHDQVPFDGLWIDMNEPSNFYDVHNLYGLSEAIATYKALQSIPGKRPFVISRSTFPG--------SGRYAG--HWLGDN 218 (339)
T ss_pred HHHhcCCCcEEEecCCCCchHhhhcchhhHHHHHHHHHHHHhcCCCCCEEEEecCccc--------ccccce--eECCCc
Confidence 6 5569999999998532211 111 12 233445544 3 3688876553111 023432 257899
Q ss_pred CCChhhHHHHhh
Q 008142 278 WDTWGDVAAHFN 289 (576)
Q Consensus 278 ~~~W~~~~~~~~ 289 (576)
..+|+.+...+-
T Consensus 219 ~s~W~~L~~~i~ 230 (339)
T cd06602 219 ASTWEDLRYSII 230 (339)
T ss_pred cCCHHHHHHHHH
Confidence 999998776543
No 31
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.02 E-value=9.8e-09 Score=106.44 Aligned_cols=189 Identities=19% Similarity=0.267 Sum_probs=121.3
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHH
Q 008142 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (576)
Q Consensus 50 ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~ 129 (576)
.|+++|+++|+-+.+. ..-.+.|.||..|+.....- ...+.++.++.|+++||+ .+.|+++||+
T Consensus 22 ~s~~ev~~v~~~~r~~--~iP~D~i~lD~dw~~~~~~~--------~~~~~~~~ft~d~~~FPd------p~~mi~~Lh~ 85 (292)
T cd06595 22 YSDEEYLALMDRFKKH--NIPLDVLVIDMDWHVTDIPS--------KYGSGWTGYSWNRKLFPD------PEKLLQDLHD 85 (292)
T ss_pred CCHHHHHHHHHHHHHh--CCCccEEEEecccccccccc--------cccCCcceeEEChhcCCC------HHHHHHHHHH
Confidence 5899999999876432 23368999999998632100 002457889999999995 9999999999
Q ss_pred cCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHH-HHHHHH
Q 008142 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFL-RSLYQQ 208 (576)
Q Consensus 130 ~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~-~~~~~~ 208 (576)
+|+|+-+++.|++. +++..+. |.+ ..++..... .......+|+|+|+++++. +.+.+.
T Consensus 86 ~G~k~v~~v~P~~~---~~~~~~~--------y~~-----~~~~~~~~~-----~~~~~~~~D~tnp~a~~~w~~~~~~~ 144 (292)
T cd06595 86 RGLKVTLNLHPADG---IRAHEDQ--------YPE-----MAKALGVDP-----ATEGPILFDLTNPKFMDAYFDNVHRP 144 (292)
T ss_pred CCCEEEEEeCCCcc---cCCCcHH--------HHH-----HHHhcCCCc-----ccCCeEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999752 1111111 111 011111110 0112347899999999854 777778
Q ss_pred HHhhCccEEEecCCCC-----CCCChH----H--HHHHHHHHHhCCCCeEEEcCCCCCCCchhhhhhcccccEEEEecCC
Q 008142 209 YAEWGVDFVKHDCVFG-----DDLDIN----E--ISFVSEVLKELDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDD 277 (576)
Q Consensus 209 ~a~wGvdylK~D~~~~-----~~~~~~----~--y~~m~~al~~~gr~i~lsls~~~~~~p~~a~~~~~~~n~~Ris~D~ 277 (576)
+.+.|||++|.|+.-+ ....+. . |..++ +.-.||++++=|.... ..+|+-.| ++|+
T Consensus 145 ~~~~Gidg~W~D~~E~~~~~~~~~~~~~~~~~~~y~~~~---~~~~r~f~lsRs~~~G--------~qry~~~W--sGD~ 211 (292)
T cd06595 145 LEKQGVDFWWLDWQQGNRTRTPGLDPLWWLNHVHYLDSA---RNGRRPLIFSRWAGLG--------SHRYPIGF--SGDT 211 (292)
T ss_pred HHhcCCcEEEecCCCCcccccCCcchHHHHHHHHHHHhh---ccCCCcEEEEeecccC--------CCcCCCcc--CCCc
Confidence 8999999999997432 111211 1 12222 1346899987663211 13566566 8999
Q ss_pred CCChhhHHHHh
Q 008142 278 WDTWGDVAAHF 288 (576)
Q Consensus 278 ~~~W~~~~~~~ 288 (576)
..+|+.+...+
T Consensus 212 ~s~W~~l~~~i 222 (292)
T cd06595 212 IISWASLAFQP 222 (292)
T ss_pred ccCHHHHHHHH
Confidence 99999887543
No 32
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=98.98 E-value=1.6e-08 Score=116.53 Aligned_cols=209 Identities=23% Similarity=0.349 Sum_probs=137.4
Q ss_pred CCCCCCc---eEeccccccCcCCCHHHHHHHHHHHHHhhccCCceEEEeccc-ccccccCCccccCCCccccCCCCCcee
Q 008142 31 VRASSPP---RGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYL-WYRRKVKGAYVDSLGFDVIDEWGRMIP 106 (576)
Q Consensus 31 ~~~~~pP---mGWnSW~~~~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdg-W~~~~~~g~~~~~~~~~~~d~~G~~~~ 106 (576)
+.++.|| +| +.|-.....-+|+++++.++.+.+. +.-++.|.+|.. |.. .++.++.
T Consensus 256 Gkp~l~P~Wa~G-~~~~~~~~~~~e~~v~~~i~~~~~~--~IP~d~~~lD~~~~~~-----------------~~~~F~w 315 (772)
T COG1501 256 GKPPLPPKWALG-WLWTSRYTYYDEDEVLEFIDEMRER--DIPLDVFVLDIDFWMD-----------------NWGDFTW 315 (772)
T ss_pred CCCCCCCceecC-CCceeccccccHHHHHHHHhhcccc--cCcceEEEEeehhhhc-----------------cccceEE
Confidence 5556666 56 2333344456899999999987553 334589999985 753 4788999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccc-cccccCC
Q 008142 107 DPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKE-RACAWMQ 185 (576)
Q Consensus 107 d~~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~-~~~~~~~ 185 (576)
|+.+||+ .|.|++++|++|+|+=+|+.|.+.. ++++..+.. ...|..++..... ..+.|.
T Consensus 316 d~~~FP~------pk~mi~~l~~~Gikl~~~i~P~i~~-----d~~~~~e~~-------~~Gy~~k~~~g~~~~~~~w~- 376 (772)
T COG1501 316 DPDRFPD------PKQMIAELHEKGIKLIVIINPYIKQ-----DSPLFKEAI-------EKGYFVKDPDGEIYQADFWP- 376 (772)
T ss_pred CcccCCC------HHHHHHHHHhcCceEEEEecccccc-----CCchHHHHH-------HCCeEEECCCCCEeeecccC-
Confidence 9999996 8999999999999999999997642 334433211 1223344332111 112332
Q ss_pred CCceeecCCcHHHHHHHHH-HHHHHHhhCccEEEecCCCC---------CCCChH---------HHHHHHHHHHhC---C
Q 008142 186 HGFMSVNTKLGAGRAFLRS-LYQQYAEWGVDFVKHDCVFG---------DDLDIN---------EISFVSEVLKEL---D 243 (576)
Q Consensus 186 ~~~~~lD~t~p~~~~~~~~-~~~~~a~wGvdylK~D~~~~---------~~~~~~---------~y~~m~~al~~~---g 243 (576)
+.-..+|+|+|++++|..+ ..+.+.+.|||.+|.|+.-. ...+.+ ..++..+++++. .
T Consensus 377 ~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~~~~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~~~~~~ 456 (772)
T COG1501 377 GNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEPFDGDGFGNGIDHEEMHNLYPLLYAKAVYEALKELGGNE 456 (772)
T ss_pred CcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCccccccccccccCHHHHhcchhHHHHHHHHHHHHhhcCCC
Confidence 3345799999999999984 55779999999999998632 111111 124566777766 4
Q ss_pred CCeEEEcCCCCCCCchhhhhhcccccEEEEecCCCCChhhHHHHh
Q 008142 244 RPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHF 288 (576)
Q Consensus 244 r~i~lsls~~~~~~p~~a~~~~~~~n~~Ris~D~~~~W~~~~~~~ 288 (576)
||++|+=|..... ..++-+| ++|+...|+++...+
T Consensus 457 r~~~lsRsg~aG~--------Q~~~~~W--sGD~~s~wd~l~~si 491 (772)
T COG1501 457 RPFILSRSGYAGS--------QRYAAHW--SGDNRSSWDSLRESI 491 (772)
T ss_pred ceEEEEecccccc--------eecccee--CCccccchHHHHhhH
Confidence 7898877642110 1233333 789999999887654
No 33
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=98.97 E-value=5.4e-08 Score=102.49 Aligned_cols=111 Identities=16% Similarity=0.190 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHH
Q 008142 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (576)
Q Consensus 50 ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~ 129 (576)
-|+++++++++.+.+. ..-++.|.||..|+. .++.++.|+++||+ .+.|++.||+
T Consensus 21 ~~~~ev~~v~~~~r~~--~IP~D~i~lDidy~~-----------------~~~~Ft~d~~~FPd------p~~mv~~L~~ 75 (332)
T cd06601 21 SNRSDLEEVVEGYRDN--NIPLDGLHVDVDFQD-----------------NYRTFTTNGGGFPN------PKEMFDNLHN 75 (332)
T ss_pred CCHHHHHHHHHHHHHc--CCCCceEEEcCchhc-----------------CCCceeecCCCCCC------HHHHHHHHHH
Confidence 4889999999876442 333689999999974 35789999999995 9999999999
Q ss_pred cCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHH
Q 008142 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY 209 (576)
Q Consensus 130 ~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~ 209 (576)
+|+|..+++.|++.. |..| ++....+|++||++++|....++.+
T Consensus 76 ~G~klv~~i~P~i~~---------------------g~~~---------------~~~~~~pDftnp~ar~wW~~~~~~l 119 (332)
T cd06601 76 KGLKCSTNITPVISY---------------------GGGL---------------GSPGLYPDLGRPDVREWWGNQYKYL 119 (332)
T ss_pred CCCeEEEEecCceec---------------------CccC---------------CCCceeeCCCCHHHHHHHHHHHHHH
Confidence 999999999998741 1100 0112358999999999998888888
Q ss_pred HhhCccEEEecC
Q 008142 210 AEWGVDFVKHDC 221 (576)
Q Consensus 210 a~wGvdylK~D~ 221 (576)
.+-|||+++.|.
T Consensus 120 ~~~Gv~~~W~Dm 131 (332)
T cd06601 120 FDIGLEFVWQDM 131 (332)
T ss_pred HhCCCceeecCC
Confidence 899999999996
No 34
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=98.88 E-value=1.4e-07 Score=96.40 Aligned_cols=166 Identities=19% Similarity=0.263 Sum_probs=111.0
Q ss_pred CCCCCceEec--cccccCcCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCc--eeC
Q 008142 32 RASSPPRGWN--SYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRM--IPD 107 (576)
Q Consensus 32 ~~~~pPmGWn--SW~~~~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~--~~d 107 (576)
.++.||. |- .|.+.....+++++++.++.+.+. ...++.|.||++|+.. .+.. +.|
T Consensus 2 ~p~~~P~-wa~G~~~~~~~~~~~~~v~~~~~~~~~~--~iP~d~~~lD~~~~~~-----------------~~~f~~~~d 61 (265)
T cd06589 2 KPALPPK-WAFGYWLSRYGYGDQDKVLEVIDGMREN--DIPLDGFVLDDDYTDG-----------------YGDFTFDWD 61 (265)
T ss_pred CCCCCcH-HHHHHHHhcCCCCCHHHHHHHHHHHHHc--CCCccEEEECcccccC-----------------CceeeeecC
Confidence 4566776 42 444455567999999999866432 2336899999999864 3455 899
Q ss_pred CCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCC
Q 008142 108 PDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHG 187 (576)
Q Consensus 108 ~~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~ 187 (576)
+++||+ ++.++++||++|+|+.+|+.|++
T Consensus 62 ~~~Fpd------p~~~i~~l~~~g~~~~~~~~P~v--------------------------------------------- 90 (265)
T cd06589 62 AGKFPN------PKSMIDELHDNGVKLVLWIDPYI--------------------------------------------- 90 (265)
T ss_pred hhhCCC------HHHHHHHHHHCCCEEEEEeChhH---------------------------------------------
Confidence 999995 99999999999999999988743
Q ss_pred ceeecCCcHHHHHHHHHHHHH-HHhhCccEEEecCCCCCCC-------------Ch----HHH-----HHHHHHHHhC--
Q 008142 188 FMSVNTKLGAGRAFLRSLYQQ-YAEWGVDFVKHDCVFGDDL-------------DI----NEI-----SFVSEVLKEL-- 242 (576)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~-~a~wGvdylK~D~~~~~~~-------------~~----~~y-----~~m~~al~~~-- 242 (576)
++|+.+.++. +.+.|||++|+|+.-.... .. ..| +++.+++++.
T Consensus 91 -----------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~ 159 (265)
T cd06589 91 -----------REWWAEVVKKLLVSLGVDGFWTDMGEPSPGDGNIFTGGVVGRVKHEEMHNAYPLLYAEATYEALRKNSK 159 (265)
T ss_pred -----------HHHHHHHHHHhhccCCCCEEeccCCCCCcCCCccccCCcCCCccHHHHcchhHHHHHHHHHHHHHHhcC
Confidence 2344444444 4899999999998532100 11 112 2345555543
Q ss_pred -CCCeEEEcCCCCCCCchhhhhhcccccEEEEecCCCCChhhHHHHhh
Q 008142 243 -DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFN 289 (576)
Q Consensus 243 -gr~i~lsls~~~~~~p~~a~~~~~~~n~~Ris~D~~~~W~~~~~~~~ 289 (576)
.||++++=+.... ...|+ .--++|...+|+.+...+.
T Consensus 160 ~~r~~~~sRs~~~G--------sqry~--~~W~GD~~stW~~l~~~i~ 197 (265)
T cd06589 160 NKRPFILSRSGYAG--------SQRYA--GMWSGDNTSTWGYLRSQIP 197 (265)
T ss_pred CCCeEEEEcCCccc--------ccCcC--ceeCCcccCCHHHHHHHHH
Confidence 3688887664211 12342 3357888899999876654
No 35
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=98.86 E-value=2.4e-07 Score=98.04 Aligned_cols=196 Identities=14% Similarity=0.070 Sum_probs=124.1
Q ss_pred CCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHH
Q 008142 49 TISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVH 128 (576)
Q Consensus 49 ~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih 128 (576)
.-|++++++.++.+.+. ..-.+.|.||..|.. ..+.+..|++|||+ ++.|++.||
T Consensus 20 y~~~~ev~~~~~~~~~~--~iP~d~i~lD~~~~~-----------------~~~~f~~d~~~FPd------p~~mi~~L~ 74 (339)
T cd06603 20 YKDQEDVKEVDAGFDEH--DIPYDVIWLDIEHTD-----------------GKRYFTWDKKKFPD------PEKMQEKLA 74 (339)
T ss_pred CCCHHHHHHHHHHHHHc--CCCceEEEEChHHhC-----------------CCCceEeCcccCCC------HHHHHHHHH
Confidence 35899999999876432 233689999999864 24678899999996 999999999
Q ss_pred HcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHH
Q 008142 129 AMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQ 208 (576)
Q Consensus 129 ~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~ 208 (576)
++|+|+-+|+.|++.. +++++++.+... ..|..++.........+.++....+|+|+|++++|+.+.++.
T Consensus 75 ~~G~k~~~~~~P~v~~---~~~~~~y~e~~~-------~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~ 144 (339)
T cd06603 75 SKGRKLVTIVDPHIKR---DDGYYVYKEAKD-------KGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSY 144 (339)
T ss_pred HCCCEEEEEecCceec---CCCCHHHHHHHH-------CCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHH
Confidence 9999999999998743 122344322110 112222222111111223443457999999999999887776
Q ss_pred HH---hhCccEEEecCCCCC-------C----------CChH----HH-----HHHHHHHHhC----CCCeEEEcCCCCC
Q 008142 209 YA---EWGVDFVKHDCVFGD-------D----------LDIN----EI-----SFVSEVLKEL----DRPIVYSLSPGTG 255 (576)
Q Consensus 209 ~a---~wGvdylK~D~~~~~-------~----------~~~~----~y-----~~m~~al~~~----gr~i~lsls~~~~ 255 (576)
+. +-|++++++|..-+. . .... .| ++..+++.+. .||++++=+....
T Consensus 145 ~~~~~~~g~~g~w~D~~Ep~~f~~~~~~~p~d~~~~~~~~~~~~hN~y~~~~~~a~~e~~~~~~~~~~r~~~~sRs~~~G 224 (339)
T cd06603 145 DKYKGSTENLYIWNDMNEPSVFNGPELTMPKDAIHYGGIEHREVHNIYGLYMHMATFDGLLKRSEGNKRPFVLTRSFFAG 224 (339)
T ss_pred HhhcccCCCceEEeccCCccccCCCCCcCCCcceecCCCcHHHHhhHhHHHHHHHHHHHHHHhhccCCceEEEEeccccc
Confidence 54 479999999964210 0 0011 12 2344455433 4787776653211
Q ss_pred CCchhhhhhcccccEEEEecCCCCChhhHHHHhh
Q 008142 256 VTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFN 289 (576)
Q Consensus 256 ~~p~~a~~~~~~~n~~Ris~D~~~~W~~~~~~~~ 289 (576)
...|+- =-++|+..+|+.+...+.
T Consensus 225 --------~qry~~--~W~GD~~s~W~~L~~~i~ 248 (339)
T cd06603 225 --------SQRYAA--IWTGDNTATWEHLKISIP 248 (339)
T ss_pred --------ccceee--eeCCCccCCHHHHHHHHH
Confidence 123442 357899999998876554
No 36
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=98.85 E-value=1.5e-07 Score=110.00 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=102.2
Q ss_pred CCCCCCce---Ee--ccccccCcCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCce
Q 008142 31 VRASSPPR---GW--NSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMI 105 (576)
Q Consensus 31 ~~~~~pPm---GW--nSW~~~~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~ 105 (576)
+.++.||. |+ |-|. .-++++++++++.+.+. ..-.+.|.+|..|+. .++.++
T Consensus 178 Grp~mpP~WALGy~qSR~~----Y~sq~eV~eva~~fre~--~IP~DvIwlDidYm~-----------------g~~~FT 234 (978)
T PLN02763 178 GTVFMPPKWALGYQQCRWS----YESAKRVAEIARTFREK--KIPCDVVWMDIDYMD-----------------GFRCFT 234 (978)
T ss_pred CCCCCCchHHhheeeccCC----CCCHHHHHHHHHHHHHc--CCCceEEEEehhhhc-----------------CCCcee
Confidence 66777885 31 2222 24789999999876542 233688999988863 356689
Q ss_pred eCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCC
Q 008142 106 PDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQ 185 (576)
Q Consensus 106 ~d~~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~ 185 (576)
.|+++||+ .+.|++++|++|+|.-.++.|++.. +++-+++.+... ..+..++....+....++|
T Consensus 235 wD~~rFPd------P~~mv~~Lh~~G~kvv~iidPgI~~---d~gY~~y~eg~~-------~~~fvk~~~G~~y~G~vWp 298 (978)
T PLN02763 235 FDKERFPD------PKGLADDLHSIGFKAIWMLDPGIKA---EEGYFVYDSGCE-------NDVWIQTADGKPFVGEVWP 298 (978)
T ss_pred ECcccCCC------HHHHHHHHHHCCCEEEEEEcCCCcc---CCCCHHHHhHhh-------cCeeEECCCCCeeEeeecC
Confidence 99999995 9999999999999997777898742 112222211000 0111111111111112334
Q ss_pred CCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCC
Q 008142 186 HGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (576)
Q Consensus 186 ~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (576)
+....+|+|+|++++|....++.|.+.|||+++.|+.
T Consensus 299 G~~~fpDFTnP~ar~WW~~~~k~l~d~GVDG~W~Dmn 335 (978)
T PLN02763 299 GPCVFPDFTNKKTRSWWANLVKDFVSNGVDGIWNDMN 335 (978)
T ss_pred CCccccCCCCHHHHHHHHHHHHHHhcCCCcEEEccCC
Confidence 4445689999999999999999999999999999974
No 37
>PRK10426 alpha-glucosidase; Provisional
Probab=98.79 E-value=3.2e-07 Score=104.44 Aligned_cols=210 Identities=13% Similarity=0.143 Sum_probs=123.8
Q ss_pred CCCCCCceEecc---ccccCcCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeC
Q 008142 31 VRASSPPRGWNS---YDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPD 107 (576)
Q Consensus 31 ~~~~~pPmGWnS---W~~~~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d 107 (576)
+.++.||. |.= |..++ -+++++++.++.+.+. ..-.+.|.|| .|+..... +.| ...+++++.|
T Consensus 199 Gr~p~~P~-Wal~G~~~g~~--~~~~~v~~v~~~~r~~--~IP~d~i~ld-dw~~~~~~-----~~g---~~~~~~~~~d 264 (635)
T PRK10426 199 GRQPELPD-WAYDGVTLGIQ--GGTEVVQKKLDTMRNA--GVKVNGIWAQ-DWSGIRMT-----SFG---KRLMWNWKWD 264 (635)
T ss_pred CCCCCCCh-hhccCcccccc--CCHHHHHHHHHHHHHc--CCCeeEEEEe-cccccccc-----ccc---ccccccceEC
Confidence 66667775 432 22232 2577888888765432 1225788888 49753210 000 0123457889
Q ss_pred CCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCC
Q 008142 108 PDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHG 187 (576)
Q Consensus 108 ~~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~ 187 (576)
+++||+ ++.|+++||++|+|+=+|+.|++.. +++++.+... ..|..++.........+.+..
T Consensus 265 ~~~FPd------p~~mi~~L~~~G~k~v~~i~P~v~~-----~~~~y~e~~~-------~gy~vk~~~g~~~~~~~~~~~ 326 (635)
T PRK10426 265 SERYPQ------LDSRIKQLNEEGIQFLGYINPYLAS-----DGDLCEEAAE-------KGYLAKDADGGDYLVEFGEFY 326 (635)
T ss_pred hhhCCC------HHHHHHHHHHCCCEEEEEEcCccCC-----CCHHHHHHHH-------CCcEEECCCCCEEEeEecCCC
Confidence 999995 9999999999999999999998742 3444432110 112222221111111122222
Q ss_pred ceeecCCcHHHHHHHHHHH-HHHHhhCccEEEecCCC---C-----CCCChH----HH-----HHHHHHHHhC---CCCe
Q 008142 188 FMSVNTKLGAGRAFLRSLY-QQYAEWGVDFVKHDCVF---G-----DDLDIN----EI-----SFVSEVLKEL---DRPI 246 (576)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~-~~~a~wGvdylK~D~~~---~-----~~~~~~----~y-----~~m~~al~~~---gr~i 246 (576)
...+|+|+|++++|+...+ +.+.+.|||.+|.|+-- . .+.+.. .| ++..+++++. +||+
T Consensus 327 ~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~~g~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~f 406 (635)
T PRK10426 327 AGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYLPTDAYLHNGVSAEIMHNAWPALWAKCNYEALEETGKLGEIL 406 (635)
T ss_pred ceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCCCCcceeeCCCCHHHhccHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 3579999999999997766 46889999999999732 1 111211 12 2344555443 4788
Q ss_pred EEEcCCCCCCCchhhhhhccccc-EEEEecCCCCChh
Q 008142 247 VYSLSPGTGVTPAMAKEVSGLVN-MYRITGDDWDTWG 282 (576)
Q Consensus 247 ~lsls~~~~~~p~~a~~~~~~~n-~~Ris~D~~~~W~ 282 (576)
+++=+.... ...|+. .| ++|...+|+
T Consensus 407 ~ltRsg~aG--------sQry~~~~W--sGD~~ssW~ 433 (635)
T PRK10426 407 FFMRAGYTG--------SQKYSTLFW--AGDQNVDWS 433 (635)
T ss_pred EEEccccCC--------cCCcccccc--CCCCCCcCc
Confidence 887653111 124544 24 689988996
No 38
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=98.78 E-value=1e-08 Score=89.70 Aligned_cols=89 Identities=12% Similarity=0.050 Sum_probs=69.2
Q ss_pred cccccccccccccceEEEeccCCCCCCCccccccCCCcCCC----CceeecCCCCCceEE---------EeeccCCCcee
Q 008142 431 ANSWSIQAHDQELEEICWKGKSGNKIGEPLCLYKSRALLSS----DGEMIYKQQYQGKVH---------LLASKGVGVCL 497 (576)
Q Consensus 431 ~dlWs~~~~~~~~g~i~~~~~~~~~~~~~~Cldv~~~~ta~----~~w~c~g~~~Q~w~~---------~~~~~~~g~CL 497 (576)
-+.|+....+...+.+.+... ...+|||+.+.++.+ ++|.|++..+|+|.+ |++ ..+++||
T Consensus 2 nQ~W~~~~~~~~~g~Y~i~n~-----~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g~y~I~n-~~s~~~L 75 (105)
T PF14200_consen 2 NQQWTFTPVGDSDGYYKIRNV-----NSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDGYYRIRN-KNSGKVL 75 (105)
T ss_dssp GGEEEEEEEETTTTEEEEEET-----TTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTSEEEEEE-TSTTEEE
T ss_pred CCEEEEEEecCCCCEEEEEEC-----CCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCCeEEEEE-CCCCcEE
Confidence 367888775434566666421 356899999988766 899999999999976 333 3589999
Q ss_pred ecCCCCccCCCCceeeEEecc-CCCCCCceEE
Q 008142 498 DASPKWKLTSKELRRGSFSKC-KRDANQMWQL 528 (576)
Q Consensus 498 d~~~~~~~~~G~~~~v~~w~C-~g~~~Q~W~~ 528 (576)
|+.++++. +| + .|++|+| ++..+|+|++
T Consensus 76 dv~~~~~~-~g-~-~v~~~~~~~~~~~Q~W~l 104 (105)
T PF14200_consen 76 DVAGGSTA-NG-T-NVQQWEYDNGSDNQQWKL 104 (105)
T ss_dssp EEGGGSSS-TT-E-BEEEEE-STSSGGGEEEE
T ss_pred EECCCCCC-CC-C-EEEEEeCCCCCccCEEEe
Confidence 99998874 89 3 9999999 9999999987
No 39
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=98.75 E-value=3.7e-08 Score=86.64 Aligned_cols=72 Identities=22% Similarity=0.416 Sum_probs=62.0
Q ss_pred CCceeecCCCCccCCCCceeeEEeccCCC-CCCceEECcCCcEEeCCCCceEEeCCCCccCCCCcEEEEecCC-cCccee
Q 008142 493 VGVCLDASPKWKLTSKELRRGSFSKCKRD-ANQMWQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATG-REGISL 570 (576)
Q Consensus 493 ~g~CLd~~~~~~~~~G~~~~v~~w~C~g~-~~Q~W~~~~~G~l~n~~sg~Cldv~~~~t~~~G~~v~~w~c~g-~~~q~~ 570 (576)
+++|||+.+.+ +| ..|.+|+|++. .+|+|.+..+|.++...+++|||+.+.. +|+.|.++.|++ ..+|.|
T Consensus 9 ~~~cL~~~~~~---~~--~~v~~~~c~~~~~~Q~W~~~~~g~~~~~~~~~Cl~~~~~~---~~~~~~~~~c~~~~~~Q~W 80 (124)
T cd00161 9 TGLCLDVNGGS---DG--GPVQLYPCHGNGNNQKWTLTSDGTIRIKSSNLCLDVGGDA---PGSKVRLYTCSGGSDNQRW 80 (124)
T ss_pred CCeEEECCCCC---CC--CEEEEEECCCCCccCCEEEeCCCeEEEcCCCeEEcccCCC---CCCEEEEEECCCCCcCCEE
Confidence 79999997764 34 27999999998 8999999999998888899999997754 678999999998 889999
Q ss_pred hh
Q 008142 571 ML 572 (576)
Q Consensus 571 ~~ 572 (576)
..
T Consensus 81 ~~ 82 (124)
T cd00161 81 TF 82 (124)
T ss_pred EE
Confidence 64
No 40
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=98.60 E-value=9.7e-08 Score=84.02 Aligned_cols=69 Identities=25% Similarity=0.489 Sum_probs=58.0
Q ss_pred CCCceeecCCCCccCCCCceeeEEeccCC-CCCCceEECcCCcEEeCCCCceEEeCCCCccCCCCcEEEEecCC-cCcce
Q 008142 492 GVGVCLDASPKWKLTSKELRRGSFSKCKR-DANQMWQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATG-REGIS 569 (576)
Q Consensus 492 ~~g~CLd~~~~~~~~~G~~~~v~~w~C~g-~~~Q~W~~~~~G~l~n~~sg~Cldv~~~~t~~~G~~v~~w~c~g-~~~q~ 569 (576)
.+++|||+.+.+ . .++++.|++ ..+|+|.++.+|.|++. +++|||+.+.+ . +.|++|.|++ ..+|.
T Consensus 5 ~~~~Cl~~~~~~----~---~v~l~~c~~~~~~Q~w~~~~~g~~~~~-~~~Cl~~~~~~---~-~~v~l~~c~~~~~~Q~ 72 (117)
T smart00458 5 NTGKCLDVNGNS----N---PVGLFDCHGTGGNQLWKLTSDGAIRIA-TDLCLTANGNT---G-STVTLYSCDGDADNQY 72 (117)
T ss_pred cCCccEecCCCC----c---eEEEEeCCCCCccceEEEeCCCeEEec-CCccCccCCCC---C-CEEEEEECCCCCcCCE
Confidence 468999987653 1 689999999 78999999999999888 99999997642 2 6799999998 89999
Q ss_pred ehh
Q 008142 570 LML 572 (576)
Q Consensus 570 ~~~ 572 (576)
|..
T Consensus 73 W~~ 75 (117)
T smart00458 73 WTV 75 (117)
T ss_pred EEE
Confidence 964
No 41
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=98.37 E-value=8.3e-07 Score=78.66 Aligned_cols=80 Identities=20% Similarity=0.380 Sum_probs=61.3
Q ss_pred EEeeccCCCceeecCCCCccCCCCceeeEEeccCCCCCCceEECcCCcEEeCCCC-ceEEeCCCCccCCCCcEEEEecCC
Q 008142 486 HLLASKGVGVCLDASPKWKLTSKELRRGSFSKCKRDANQMWQLNPSGALISSYSG-LCATVNLVKADVGSGGIRSWIATG 564 (576)
Q Consensus 486 ~~~~~~~~g~CLd~~~~~~~~~G~~~~v~~w~C~g~~~Q~W~~~~~G~l~n~~sg-~Cldv~~~~t~~~G~~v~~w~c~g 564 (576)
.++..+.+++|||+. .... .| ..|.+++|.+..+|+|.+..+|.++..... +||++.+.. +|+.|.++.|+.
T Consensus 4 ~i~~~~~~~~cl~~~-~~~~-~~--~~v~l~~c~~~~~Q~w~~~~~~~i~~~~~~~~CL~~~~~~---~~~~i~l~~C~~ 76 (124)
T PF00652_consen 4 YIRNVNKSGLCLDVQ-GSTK-NG--SPVVLYPCDGSDNQLWRFDPDGQIRSNNNPNLCLDVDGSS---PGTKIVLWPCDS 76 (124)
T ss_dssp EEEEEEGGGEEEEEG-GSSS-TT--TBEEEEE--SSGGGEEEEETTSBEEETTETTEEEEESSSS---TTEBEEEEETTT
T ss_pred EEEEeeCCCCeEEEc-CCCC-CC--CEEEEEECCCCCceeEEEcCCCceeeccCcceEEEeeccC---CCceEEEeeccC
Confidence 344433379999998 3332 55 389999999988999999999998887655 599999876 689999999996
Q ss_pred c-Ccceehh
Q 008142 565 R-EGISLML 572 (576)
Q Consensus 565 ~-~~q~~~~ 572 (576)
. .+|.|..
T Consensus 77 ~~~~Q~W~~ 85 (124)
T PF00652_consen 77 NSSNQRWKF 85 (124)
T ss_dssp TGGGGBEEE
T ss_pred CccCCeEEE
Confidence 5 5599964
No 42
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=98.12 E-value=2.1e-05 Score=80.22 Aligned_cols=131 Identities=21% Similarity=0.345 Sum_probs=78.1
Q ss_pred cCcCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHH
Q 008142 46 FCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAK 125 (576)
Q Consensus 46 ~~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~ 125 (576)
+...+|.+..++.+|+- .++|++|+.||.||..... +...+++ +..|. ..|++|++
T Consensus 25 ~~~g~~t~~~k~yIDfA----a~~G~eYvlvD~GW~~~~~-------------~~~~d~~---~~~~~----~dl~elv~ 80 (273)
T PF10566_consen 25 FKHGATTETQKRYIDFA----AEMGIEYVLVDAGWYGWEK-------------DDDFDFT---KPIPD----FDLPELVD 80 (273)
T ss_dssp S-BSSSHHHHHHHHHHH----HHTT-SEEEEBTTCCGS---------------TTT--TT----B-TT------HHHHHH
T ss_pred CcCCCCHHHHHHHHHHH----HHcCCCEEEeccccccccc-------------ccccccc---ccCCc----cCHHHHHH
Confidence 33468999999999974 4789999999999985211 0111111 11122 26999999
Q ss_pred HHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHH
Q 008142 126 KVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSL 205 (576)
Q Consensus 126 ~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~ 205 (576)
|.++||.++=||..--.. + ...+ + ...++..
T Consensus 81 Ya~~KgVgi~lw~~~~~~----------------------~---~~~~-----------------~-------~~~~~~~ 111 (273)
T PF10566_consen 81 YAKEKGVGIWLWYHSETG----------------------G---NVAN-----------------L-------EKQLDEA 111 (273)
T ss_dssp HHHHTT-EEEEEEECCHT----------------------T---BHHH-----------------H-------HCCHHHH
T ss_pred HHHHcCCCEEEEEeCCcc----------------------h---hhHh-----------------H-------HHHHHHH
Confidence 999999999888643110 0 0000 0 1114667
Q ss_pred HHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHhC-CCCeEEEcC
Q 008142 206 YQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKEL-DRPIVYSLS 251 (576)
Q Consensus 206 ~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~-gr~i~lsls 251 (576)
++++++|||..||+||+..+ +.+..+-..++++++ ...+++...
T Consensus 112 f~~~~~~Gv~GvKidF~~~d--~Q~~v~~y~~i~~~AA~~~LmvnfH 156 (273)
T PF10566_consen 112 FKLYAKWGVKGVKIDFMDRD--DQEMVNWYEDILEDAAEYKLMVNFH 156 (273)
T ss_dssp HHHHHHCTEEEEEEE--SST--SHHHHHHHHHHHHHHHHTT-EEEET
T ss_pred HHHHHHcCCCEEeeCcCCCC--CHHHHHHHHHHHHHHHHcCcEEEec
Confidence 89999999999999998753 344445555555443 356887775
No 43
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=98.01 E-value=3.6e-05 Score=87.57 Aligned_cols=149 Identities=19% Similarity=0.219 Sum_probs=104.2
Q ss_pred CCCCCceEeccccccC--cCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCC
Q 008142 32 RASSPPRGWNSYDSFC--WTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPD 109 (576)
Q Consensus 32 ~~~~pPmGWnSW~~~~--~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~ 109 (576)
.+..||. |+-+..+. ...+.+++++.++.+.+ ...+++.+.+|.-|+. ++++.+.|+.
T Consensus 289 ~P~m~pY-WslGf~~~RwgY~nls~~~dvv~~~~~--agiPld~~~~DiDyMd-----------------~ykDFTvd~~ 348 (805)
T KOG1065|consen 289 RPAMPPY-WSLGFQLCRWGYKNLSVVRDVVENYRA--AGIPLDVIVIDIDYMD-----------------GYKDFTVDKV 348 (805)
T ss_pred CccCCch-hhccceecccccccHHHHHHHHHHHHH--cCCCcceeeeehhhhh-----------------cccceeeccc
Confidence 3444454 99887655 35788888888875421 2345789999998864 5789999999
Q ss_pred CCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccc------ccc
Q 008142 110 RWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERA------CAW 183 (576)
Q Consensus 110 kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~------~~~ 183 (576)
+|| +|+.+++.||+.|||.=+...|++..-.. + +.|.+ | ..+++..+... ..-
T Consensus 349 ~fp------~~~~fv~~Lh~~G~kyvliidP~is~~~~------y-----~~y~~-g---~~~~v~I~~~~g~~~~lg~v 407 (805)
T KOG1065|consen 349 WFP------DLKDFVDDLHARGFKYVLIIDPFISTNSS------Y-----GPYDR-G---VAKDVLIKNREGSPKMLGEV 407 (805)
T ss_pred cCc------chHHHHHHHHhCCCeEEEEeCCccccCcc------c-----hhhhh-h---hhhceeeecccCchhhhccc
Confidence 999 49999999999999999999999864211 0 01111 1 12222222110 011
Q ss_pred CCCCceeecCCcHHHHHHHHHHHHHHH-hhCccEEEecC
Q 008142 184 MQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDC 221 (576)
Q Consensus 184 ~~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~ 221 (576)
.|+..+..|.++|.+..|...-++.|. +-+||.+++|.
T Consensus 408 wP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDm 446 (805)
T KOG1065|consen 408 WPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDM 446 (805)
T ss_pred CCCcccccccCCchHHHHHHHHHHhhcccCCccceEEEC
Confidence 234567899999999999877777776 69999999996
No 44
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00027 Score=78.74 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=76.4
Q ss_pred CCccccccCC--CcCCC--CceeecCC-CCCceEE-----EeeccCCCceeecCCCCccCCCCceeeEEeccCCCCCCce
Q 008142 457 GEPLCLYKSR--ALLSS--DGEMIYKQ-QYQGKVH-----LLASKGVGVCLDASPKWKLTSKELRRGSFSKCKRDANQMW 526 (576)
Q Consensus 457 ~~~~Cldv~~--~~ta~--~~w~c~g~-~~Q~w~~-----~~~~~~~g~CLd~~~~~~~~~G~~~~v~~w~C~g~~~Q~W 526 (576)
....|+|... ..-.. .++.|.+. .+|.|.+ ++. ...||++. . .| .|++..|....+|.|
T Consensus 462 ~~~~cld~~~~~~~~~~~~~~~~Ch~~~~~Q~~~yT~~~eir~---~~~cl~~~---~--~~---~v~l~~C~~~~~q~w 530 (578)
T KOG3736|consen 462 NPNLCLDTERAPAGQGMAVGLYPCHGPGGNQYFPYTKQGEIRI---GDLCLDVD---D--AG---KVTLYDCHKMGNQLW 530 (578)
T ss_pred CcchhhhhhchhccCCCcceEecCCCccccccccccCCcceEE---CCEEeccc---c--CC---ceEEEecccccccce
Confidence 4568999876 22212 89999975 4587865 444 34899986 2 45 399999987679999
Q ss_pred EECcCCcEEeCCCCceEEeCCCCccCCCCcEEEEecCCcC-cceehh
Q 008142 527 QLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATGRE-GISLML 572 (576)
Q Consensus 527 ~~~~~G~l~n~~sg~Cldv~~~~t~~~G~~v~~w~c~g~~-~q~~~~ 572 (576)
.+..+|+|+++.||+||++.... ++ +.+-.|+.+. .|+|+.
T Consensus 531 ~~~~~~~i~~~~sg~CL~~~~~~---~~--~~l~~c~~~~~~Q~W~~ 572 (578)
T KOG3736|consen 531 HYDKDGTLYHRNSGKCLEAAVDK---NG--LILVACDPSDPTQQWLF 572 (578)
T ss_pred EEcCCCceEcCCCCccccccCCC---CC--ceEeecCCCCCcceEEE
Confidence 99888999999999999998654 33 8888998765 999974
No 45
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=96.13 E-value=0.0016 Score=68.19 Aligned_cols=155 Identities=23% Similarity=0.236 Sum_probs=110.9
Q ss_pred HHhhCccEEEecCCCCCCC--ChHHHHHHHHHHHhCCCCeEEEcCCCCCCCchhhhhhcccccEEEEecCCCCChhhHHH
Q 008142 209 YAEWGVDFVKHDCVFGDDL--DINEISFVSEVLKELDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAA 286 (576)
Q Consensus 209 ~a~wGvdylK~D~~~~~~~--~~~~y~~m~~al~~~gr~i~lsls~~~~~~p~~a~~~~~~~n~~Ris~D~~~~W~~~~~ 286 (576)
+.+|++.+.++||..+++. +..-|..|.+++.+-| ...+.+.||.-| |-|..+.+
T Consensus 37 w~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvseG---------------------~~~vGY~yi~iD--DCW~e~~R 93 (414)
T KOG2366|consen 37 WNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVSEG---------------------LADVGYEYINID--DCWSEVTR 93 (414)
T ss_pred cccccceeeecccccCCccchhHHHHHHHHHHHHHhH---------------------HHhcCcEEEech--hhhhhhcc
Confidence 6899999999999887653 3344677777775554 123567788877 78988877
Q ss_pred HhhhhhhhhhhhhhcccCCCCCCcCCCCCCcCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeeeccCCCCCCH
Q 008142 287 HFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDE 366 (576)
Q Consensus 287 ~~~~~~~~~~~~~~~~~g~~~~~wnDpDmL~~g~~~~~~~~~g~~~~~~lT~~E~rt~~slwa~~~sPLi~g~Dl~~~~~ 366 (576)
..+. +--+....++........|.+-++|-+|.+.|.| ++.+ ++..+ +.+..|..+.+++..|.|+.++|.
T Consensus 94 d~~g-rLva~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G-----~~TC-~g~PG--S~~~e~~DA~tFA~WgvDylKlD~ 164 (414)
T KOG2366|consen 94 DSDG-RLVADPSRFPSGIKALADYVHSKGLKLGIYSDAG-----NFTC-AGYPG--SLGHEESDAKTFADWGVDYLKLDG 164 (414)
T ss_pred CCcc-ccccChhhcccchhhhhhchhhcCCceeeeeccC-----chhh-ccCCc--ccchhhhhhhhhHhhCCcEEeccc
Confidence 6554 3222222222211123578999999999998865 2234 55555 888999999999999999999998
Q ss_pred hHHhccCChhhhhhccCCCCCCccceeec
Q 008142 367 TTYSLITNPTVLEINTFSSNNKEFPYIIG 395 (576)
Q Consensus 367 ~~l~lltN~eliainqd~~~~~~~~~~~~ 395 (576)
=.-..+++++...+.-+.+.+.+...+.+
T Consensus 165 C~~~~~~~~~~Yp~ms~aLN~tGrpi~yS 193 (414)
T KOG2366|consen 165 CFNNLITMPEGYPIMSRALNNTGRPIFYS 193 (414)
T ss_pred cccccccccccchhHHHHHhccCCceEEE
Confidence 88888999999888888777666544544
No 46
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=95.92 E-value=0.074 Score=55.75 Aligned_cols=84 Identities=15% Similarity=0.231 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCC-CCceeecCCcHH
Q 008142 119 GFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQ-HGFMSVNTKLGA 197 (576)
Q Consensus 119 Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~-~~~~~lD~t~p~ 197 (576)
.++.|++.+|++|+.+=-++.-|-+. .+... .++|..+... .-.|.. .+..+|||.+++
T Consensus 62 D~~~l~~~l~e~gIY~IARIv~FkD~-------~la~~---------~pe~av~~~~----G~~w~d~~~~~WvnP~~~e 121 (316)
T PF13200_consen 62 DLKALVKKLKEHGIYPIARIVVFKDP-------VLAEA---------HPEWAVKTKD----GSVWRDNEGEAWVNPYSKE 121 (316)
T ss_pred CHHHHHHHHHHCCCEEEEEEEEecCh-------HHhhh---------ChhhEEECCC----CCcccCCCCCccCCCCCHH
Confidence 69999999999998876666655322 11110 1222221100 011221 245699999999
Q ss_pred HHHHHHHHHHHHHhhCccEEEecCC
Q 008142 198 GRAFLRSLYQQYAEWGVDFVKHDCV 222 (576)
Q Consensus 198 ~~~~~~~~~~~~a~wGvdylK~D~~ 222 (576)
+.+|.-.+++..++.|||=|-+|++
T Consensus 122 vw~Y~i~IA~Eaa~~GFdEIqfDYI 146 (316)
T PF13200_consen 122 VWDYNIDIAKEAAKLGFDEIQFDYI 146 (316)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeeee
Confidence 9999999999999999999999986
No 47
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.017 Score=61.02 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=74.5
Q ss_pred ccccccCCCcCCC--CceeecCC-CCCceEEEee----ccCCCceeecCCCCccCCCCceeeEEeccCC-CCCCceEECc
Q 008142 459 PLCLYKSRALLSS--DGEMIYKQ-QYQGKVHLLA----SKGVGVCLDASPKWKLTSKELRRGSFSKCKR-DANQMWQLNP 530 (576)
Q Consensus 459 ~~Cldv~~~~ta~--~~w~c~g~-~~Q~w~~~~~----~~~~g~CLd~~~~~~~~~G~~~~v~~w~C~g-~~~Q~W~~~~ 530 (576)
..|||..+..+.. -+..|.+. .+|+|.+++. +.+..+||++... +.| .+|.+-.|.. .+.|+|.. .
T Consensus 441 ~~Cl~s~~~~~~~~~gl~~C~~s~~nqqwa~~~t~~~~~~~~elCL~v~~~---~pg--~~v~l~~C~~~e~~q~~v~-~ 514 (559)
T KOG3738|consen 441 DNCLDSQGQNSQEALGLASCHGSGGNQQWAFLRTSTQLITHRELCLAVGSN---TPG--SPVALVPCGNNETKQRWVE-L 514 (559)
T ss_pred chhhhhhhcccccCcceeecccCCCCcchhhhhhhhhHHHHHhhhheeecC---CCC--CeEEEEecCCCCCceEEEe-c
Confidence 3699998876554 68999987 7899987553 2247899999764 257 3899999965 57788864 4
Q ss_pred CCcEEeCCCCceEEeCCCCccCCCCcEEEEecCCc-Ccceeh
Q 008142 531 SGALISSYSGLCATVNLVKADVGSGGIRSWIATGR-EGISLM 571 (576)
Q Consensus 531 ~G~l~n~~sg~Cldv~~~~t~~~G~~v~~w~c~g~-~~q~~~ 571 (576)
+|.|.-..|++|||....+. -.+.+-+|.-. ..|.|.
T Consensus 515 ~~~l~h~~s~KOGd~~~~g~----~~l~~~~C~~~~~sQ~w~ 552 (559)
T KOG3738|consen 515 GGHLLHAGSHLCLDNPLKGR----WLLEVSTCESHLVSQSWQ 552 (559)
T ss_pred CCchhcccccceeccccCCC----cceeecccccccccceee
Confidence 56788888999999875432 23566788654 477774
No 48
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=94.72 E-value=0.48 Score=54.42 Aligned_cols=133 Identities=17% Similarity=0.230 Sum_probs=71.6
Q ss_pred HhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcc
Q 008142 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGIS 143 (576)
Q Consensus 64 ~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~ 143 (576)
..|+++|++.|.|=--.+... ..+.|. +..+...++ .+|.+ ...||.|++.+|++||++=|-+-+.
T Consensus 164 dyl~~LGvt~i~L~Pi~e~~~-----~~~wGY---~~~~y~~~~-~~~Gt---~~dlk~lV~~~H~~Gi~VilD~V~N-- 229 (613)
T TIGR01515 164 PYVKELGFTHIELLPVAEHPF-----DGSWGY---QVTGYYAPT-SRFGT---PDDFMYFVDACHQAGIGVILDWVPG-- 229 (613)
T ss_pred HHHHHcCCCEEEECCcccCCC-----CCCCCC---CcccCcccc-cccCC---HHHHHHHHHHHHHCCCEEEEEeccc--
Confidence 357899999998821111100 001111 222334454 35543 1369999999999999997776552
Q ss_pred ccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHHH-hhCccEEEecCC
Q 008142 144 TQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCV 222 (576)
Q Consensus 144 ~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~ 222 (576)
.+..+ ...+. .+.. .+.|...+.. ......| +...+|..+|++++|+-..++.+. +.|||.+++|.+
T Consensus 230 H~~~~-~~~~~------~~~~-~~~y~~~~~~-~~~~~~w---~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v 297 (613)
T TIGR01515 230 HFPKD-DHGLA------EFDG-TPLYEHKDPR-DGEHWDW---GTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAV 297 (613)
T ss_pred CcCCc-cchhh------ccCC-CcceeccCCc-cCcCCCC---CCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCH
Confidence 11111 00000 0000 0111111110 0001112 123678999999999988888765 799999999974
No 49
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=94.60 E-value=0.45 Score=49.96 Aligned_cols=89 Identities=16% Similarity=0.243 Sum_probs=55.9
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCcccccccccccccccc--CCCCceeecCCcH
Q 008142 119 GFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAW--MQHGFMSVNTKLG 196 (576)
Q Consensus 119 Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~--~~~~~~~lD~t~p 196 (576)
-|+.+++..|++||++=-|+..+.... ..+++..+ ++.|...+ .+...+.. ..++.+.|||.||
T Consensus 71 pL~~~I~eaHkrGlevHAW~~~~~~~~---~~~~~~~~---------~p~~~~~~--~~~~~~~~~~~~~~~~~lnP~~P 136 (311)
T PF02638_consen 71 PLEFMIEEAHKRGLEVHAWFRVGFNAP---DVSHILKK---------HPEWFAVN--HPGWVRTYEDANGGYYWLNPGHP 136 (311)
T ss_pred HHHHHHHHHHHcCCEEEEEEEeecCCC---chhhhhhc---------Cchhheec--CCCceeecccCCCCceEECCCCH
Confidence 389999999999999988884433211 11222221 22221111 00011111 0135679999999
Q ss_pred HHHHHHHHHHHH-HHhhCccEEEecC
Q 008142 197 AGRAFLRSLYQQ-YAEWGVDFVKHDC 221 (576)
Q Consensus 197 ~~~~~~~~~~~~-~a~wGvdylK~D~ 221 (576)
++++|+..+++- ...+.||.|-+|.
T Consensus 137 eVr~~i~~~v~Eiv~~YdvDGIhlDd 162 (311)
T PF02638_consen 137 EVRDYIIDIVKEIVKNYDVDGIHLDD 162 (311)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 999999887765 5689999999994
No 50
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=0.13 Score=57.95 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=54.5
Q ss_pred cCCCceeecCCCCccCCCCceeeEEeccCC-CCCCceEECcCCcEEeCCCCceEEeCCCCccCCCCcEEEEecCCcCcce
Q 008142 491 KGVGVCLDASPKWKLTSKELRRGSFSKCKR-DANQMWQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATGREGIS 569 (576)
Q Consensus 491 ~~~g~CLd~~~~~~~~~G~~~~v~~w~C~g-~~~Q~W~~~~~G~l~n~~sg~Cldv~~~~t~~~G~~v~~w~c~g~~~q~ 569 (576)
..++.|+|....... .| .++.++.|.+ +.+|.|.++..|.|+... .||++. . .|. |++..|....+|+
T Consensus 461 ~~~~~cld~~~~~~~-~~--~~~~~~~Ch~~~~~Q~~~yT~~~eir~~~--~cl~~~----~-~~~-v~l~~C~~~~~q~ 529 (578)
T KOG3736|consen 461 GNPNLCLDTERAPAG-QG--MAVGLYPCHGPGGNQYFPYTKQGEIRIGD--LCLDVD----D-AGK-VTLYDCHKMGNQL 529 (578)
T ss_pred CCcchhhhhhchhcc-CC--CcceEecCCCccccccccccCCcceEECC--EEeccc----c-CCc-eEEEecccccccc
Confidence 346889998653322 34 2799999988 678999999999997654 999997 2 444 9999997666998
Q ss_pred ehh
Q 008142 570 LML 572 (576)
Q Consensus 570 ~~~ 572 (576)
|..
T Consensus 530 w~~ 532 (578)
T KOG3736|consen 530 WHY 532 (578)
T ss_pred eEE
Confidence 864
No 51
>PLN02361 alpha-amylase
Probab=92.37 E-value=2.4 Score=46.10 Aligned_cols=37 Identities=11% Similarity=0.013 Sum_probs=31.5
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHh-hCccEEEecCCCC
Q 008142 188 FMSVNTKLGAGRAFLRSLYQQYAE-WGVDFVKHDCVFG 224 (576)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~-wGvdylK~D~~~~ 224 (576)
+--||.++|.+++++...++.+.+ .|||-+++|+..+
T Consensus 146 lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~ 183 (401)
T PLN02361 146 VPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKG 183 (401)
T ss_pred CCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 456899999999999888887765 9999999998753
No 52
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=92.29 E-value=1.9 Score=43.95 Aligned_cols=102 Identities=22% Similarity=0.404 Sum_probs=64.3
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHH
Q 008142 119 GFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAG 198 (576)
Q Consensus 119 Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~ 198 (576)
.|+.++++++++|++.|+|+..+. +|
T Consensus 76 ~l~~~~~~~~~~g~~~glwt~~~l-----------------------------~~------------------------- 101 (261)
T cd06596 76 NLKEVVDYLHANGVETGLWTQSGL-----------------------------RD------------------------- 101 (261)
T ss_pred HHHHHHHHHHHcCCccccccccch-----------------------------hh-------------------------
Confidence 599999999999999999954321 11
Q ss_pred HHHHHHHHHHHHhhCccEEEecCCC-CCCCCh--HHHHHHHHHHHhC--CCCeEEEcCCCCCCCchhhhhhcccccEEEE
Q 008142 199 RAFLRSLYQQYAEWGVDFVKHDCVF-GDDLDI--NEISFVSEVLKEL--DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRI 273 (576)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~-~~~~~~--~~y~~m~~al~~~--gr~i~lsls~~~~~~p~~a~~~~~~~n~~Ri 273 (576)
+.+....-|+.++|+|-.. +.+++. ...++..+++.+. .||++++-|-... . ..|+- --
T Consensus 102 ------~~~ev~~~g~~~~k~Dv~w~g~gy~~~l~~~ka~yeg~~~~~~~RpfiltRsg~aG-------s-QRy~~--~W 165 (261)
T cd06596 102 ------IAKEVGAAGVRARKTDVAWVGAGYSFALNGVKAAADGIESNSNARPFIVTVDGWAG-------T-QRYAG--IW 165 (261)
T ss_pred ------hhhhhccCCceEEeccchhhccchhHHHHHHHHHHHHHHhCCCCCCEEEEecCccc-------c-CCCCC--cc
Confidence 1234567799999999431 233322 2333444444443 4899998874211 0 23332 24
Q ss_pred ecCCCCChhhHHHHhhh
Q 008142 274 TGDDWDTWGDVAAHFNV 290 (576)
Q Consensus 274 s~D~~~~W~~~~~~~~~ 290 (576)
++|...+|+.+...+-.
T Consensus 166 sGD~~stWe~Lr~sI~~ 182 (261)
T cd06596 166 TGDQSGSWEYIRFHIPT 182 (261)
T ss_pred CCCCcCcHHHHHHHHHH
Confidence 78999999998876543
No 53
>PLN00196 alpha-amylase; Provisional
Probab=91.85 E-value=2.1 Score=47.02 Aligned_cols=35 Identities=11% Similarity=-0.031 Sum_probs=30.2
Q ss_pred ceeecCCcHHHHHHHHHHHHHHH-hhCccEEEecCC
Q 008142 188 FMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCV 222 (576)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~ 222 (576)
+--||.++|.+++++....+.+. +.|||.+++|+.
T Consensus 170 lpDLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD~a 205 (428)
T PLN00196 170 APDIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFA 205 (428)
T ss_pred CCccCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehh
Confidence 34589999999999988887775 799999999986
No 54
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=91.19 E-value=2.8 Score=38.41 Aligned_cols=124 Identities=13% Similarity=0.089 Sum_probs=69.5
Q ss_pred HHHHhhccCCceEEEeccc--ccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEe
Q 008142 61 IISQRLRPHGYEYVVVDYL--WYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHV 138 (576)
Q Consensus 61 ~~~~gl~~~Gy~yv~iDdg--W~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~~Glk~Giy~ 138 (576)
.+.+-|+.+|.+.|+|..+ +--. |.. .+.|...|.-. . .=|+.+++.+|++|+|+=+|+
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~a-----yYP-------t~~~~~hp~L~-~------Dllge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYA-----YYP-------TKVGPRHPGLK-R------DLLGEQVEACHERGIRVPAYF 64 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEE-----Ecc-------CCCCcCCCCCC-c------CHHHHHHHHHHHCCCEEEEEE
Confidence 3445678889999999654 2211 111 11233333322 1 147999999999999999999
Q ss_pred ecCccccccCCCCcccccccCCCcccCCCcccccccccccc-ccccCCCCceeecCCcHHHHHHHHHHHH-HHHhhCccE
Q 008142 139 MRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKER-ACAWMQHGFMSVNTKLGAGRAFLRSLYQ-QYAEWGVDF 216 (576)
Q Consensus 139 ~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~-~~~~~~~~~~~lD~t~p~~~~~~~~~~~-~~a~wGvdy 216 (576)
+.++..- + +. .+++|..+|....+. .-.....+++.+-+..|-. +|+...++ .+..+.+|-
T Consensus 65 ~~~~d~~-------~--------~~-~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~-e~~~~~i~Ei~~~y~~DG 127 (132)
T PF14871_consen 65 DFSWDED-------A--------AE-RHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYR-EFLLEQIREILDRYDVDG 127 (132)
T ss_pred eeecChH-------H--------HH-hCCceeeECCCCCCcCCCCcCCCCceecCCCccHH-HHHHHHHHHHHHcCCCCE
Confidence 8864321 1 11 267788777654310 0011111244455555543 56544443 345688888
Q ss_pred EEec
Q 008142 217 VKHD 220 (576)
Q Consensus 217 lK~D 220 (576)
|=+|
T Consensus 128 iF~D 131 (132)
T PF14871_consen 128 IFFD 131 (132)
T ss_pred EEec
Confidence 7666
No 55
>PLN02784 alpha-amylase
Probab=91.07 E-value=3.2 Score=48.99 Aligned_cols=35 Identities=20% Similarity=0.049 Sum_probs=30.4
Q ss_pred eeecCCcHHHHHHHHHHHHHHH-hhCccEEEecCCC
Q 008142 189 MSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVF 223 (576)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~ 223 (576)
--||.+||.+++.+...++.+. +.|||.+++|+.-
T Consensus 641 PDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVK 676 (894)
T PLN02784 641 PNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVR 676 (894)
T ss_pred CcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccC
Confidence 4689999999999988888775 7999999999973
No 56
>PRK14706 glycogen branching enzyme; Provisional
Probab=90.73 E-value=1.6 Score=50.31 Aligned_cols=141 Identities=18% Similarity=0.225 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeE
Q 008142 55 FLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKF 134 (576)
Q Consensus 55 i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~~Glk~ 134 (576)
+.+.++.+-.-|+++||..|.|=---+.. +..+.|. +..+...|+ .+|-. ..+||.|++.+|++|+++
T Consensus 166 y~~~~~~l~~ylk~lG~t~velmPv~e~~-----~~~~wGY---~~~~~~~~~-~~~g~---~~~~~~lv~~~H~~gi~V 233 (639)
T PRK14706 166 YRELAHRLGEYVTYMGYTHVELLGVMEHP-----FDGSWGY---QVTGYYAPT-SRLGT---PEDFKYLVNHLHGLGIGV 233 (639)
T ss_pred HHHHHHHHHHHHHHcCCCEEEccchhcCC-----CCCCCCc---Ccccccccc-cccCC---HHHHHHHHHHHHHCCCEE
Confidence 34444444456789999988762111110 0001111 222334444 45532 137999999999999998
Q ss_pred EEEeecCccccccCCCCcccccccCCCcccCCCc-cccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHH-Hhh
Q 008142 135 GIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQ-WRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY-AEW 212 (576)
Q Consensus 135 Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~-~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~w 212 (576)
=+=+-+.- ++ .+ .. +..+- +|+. |...|-. +.....|. ...+|..+|++++|+-..++.+ .+.
T Consensus 234 ilD~v~nH-~~-~~--~~------~l~~~-dg~~~y~~~~~~-~g~~~~w~---~~~~~~~~~eVr~~l~~~~~~W~~e~ 298 (639)
T PRK14706 234 ILDWVPGH-FP-TD--ES------GLAHF-DGGPLYEYADPR-KGYHYDWN---TYIFDYGRNEVVMFLIGSALKWLQDF 298 (639)
T ss_pred EEEecccc-cC-cc--hh------hhhcc-CCCcceeccCCc-CCcCCCCC---CcccCCCCHHHHHHHHHHHHHHHHHh
Confidence 65433311 11 00 00 00000 0111 1111100 00112231 2357899999999997777775 589
Q ss_pred CccEEEecCC
Q 008142 213 GVDFVKHDCV 222 (576)
Q Consensus 213 GvdylK~D~~ 222 (576)
+||.+++|.+
T Consensus 299 ~iDG~R~Dav 308 (639)
T PRK14706 299 HVDGLRVDAV 308 (639)
T ss_pred CCCeEEEeee
Confidence 9999999964
No 57
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=90.20 E-value=4.6 Score=43.69 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=20.2
Q ss_pred hHHHHHHHHHcCCeEEEEeec
Q 008142 120 FTEVAKKVHAMGLKFGIHVMR 140 (576)
Q Consensus 120 lk~la~~ih~~Glk~Giy~~p 140 (576)
+++|++.||+.|||||+|+.+
T Consensus 130 v~el~~A~rk~Glk~G~Y~S~ 150 (384)
T smart00812 130 VGELADAVRKRGLKFGLYHSL 150 (384)
T ss_pred HHHHHHHHHHcCCeEEEEcCH
Confidence 899999999999999999987
No 58
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=90.03 E-value=0.99 Score=51.35 Aligned_cols=137 Identities=17% Similarity=0.213 Sum_probs=82.9
Q ss_pred CCCCCCce---Ee--ccccccCcCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCce
Q 008142 31 VRASSPPR---GW--NSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMI 105 (576)
Q Consensus 31 ~~~~~pPm---GW--nSW~~~~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~ 105 (576)
+..+.||+ |+ |-|+ ..+|++|+.+-.-|.++- .-|+.|-||=-. .|.--..+
T Consensus 349 G~~~LPplFsiGYHQcRWN----Y~DE~DV~~Vd~~FDehd--iP~DviWLDIEh-----------------tdgKrYFT 405 (915)
T KOG1066|consen 349 GTTPLPPLFSIGYHQCRWN----YNDEEDVLTVDQGFDEHD--IPYDVIWLDIEH-----------------TDGKRYFT 405 (915)
T ss_pred CCCCCCchhhcchhhcccc----ccchhhhhhhhcCccccC--CccceEEEeeee-----------------cCCceeEe
Confidence 66777785 32 3333 246777776654444432 236788777322 23344589
Q ss_pred eCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccC-
Q 008142 106 PDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWM- 184 (576)
Q Consensus 106 ~d~~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~- 184 (576)
.|+.+||. -+.|.++|.+||-|+=.=+.|-+-. +++--|..+.+ ...|..||....+.. +|+
T Consensus 406 WDk~~FP~------P~~Ml~kLa~kgRklV~IvDPHIKk---D~~Y~v~ke~~-------~~gy~VKd~~G~Dye-G~CW 468 (915)
T KOG1066|consen 406 WDKHKFPN------PKDMLKKLASKGRKLVTIVDPHIKK---DDGYFVHKEAK-------DKGYYVKDRDGSDYE-GWCW 468 (915)
T ss_pred eccccCCC------HHHHHHHHHhcCCceEEEeCccccc---CCCeEEhHHhh-------hCCeEEEecCCCccc-cccc
Confidence 99999996 8999999999999998888886532 11111111100 112233333222211 232
Q ss_pred CCCceeecCCcHHHHHHHHHHHH
Q 008142 185 QHGFMSVNTKLGAGRAFLRSLYQ 207 (576)
Q Consensus 185 ~~~~~~lD~t~p~~~~~~~~~~~ 207 (576)
|+..-.+|+.+|.+++|..+.++
T Consensus 469 PG~S~yiDf~nP~~r~wW~~~fa 491 (915)
T KOG1066|consen 469 PGSSSYIDFINPEARKWWKSQFA 491 (915)
T ss_pred CCCcccccccCHHHHHHHhhhcc
Confidence 55567899999999999987653
No 59
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=89.40 E-value=3.8 Score=47.05 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=42.2
Q ss_pred eecCCcHHHHHHHHHHHHHHH-hhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCCeEE
Q 008142 190 SVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVY 248 (576)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~i~l 248 (576)
-++..+|.+++|+-..++.+. +.|||.+.+|... .++.+-.+.+++++++....+++
T Consensus 288 ~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~--~~~~~~~~~~~~~~~~~~p~~~l 345 (605)
T TIGR02104 288 DTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMG--IHDIETMNEIRKALNKIDPNILL 345 (605)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechh--cCCHHHHHHHHHHHHhhCCCeEE
Confidence 367789999999977777765 6999999999763 23445567788888777655444
No 60
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=87.56 E-value=3.6 Score=43.82 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.0
Q ss_pred hHHHHHHHHHcCCeEEEEeecC
Q 008142 120 FTEVAKKVHAMGLKFGIHVMRG 141 (576)
Q Consensus 120 lk~la~~ih~~Glk~Giy~~pg 141 (576)
+++|++.||+.|||||+|+.+.
T Consensus 140 v~El~~A~rk~Glk~G~Y~S~~ 161 (346)
T PF01120_consen 140 VGELADACRKYGLKFGLYYSPW 161 (346)
T ss_dssp HHHHHHHHHHTT-EEEEEEESS
T ss_pred HHHHHHHHHHcCCeEEEEecch
Confidence 7999999999999999999986
No 61
>PRK12568 glycogen branching enzyme; Provisional
Probab=87.44 E-value=5.5 Score=46.58 Aligned_cols=141 Identities=16% Similarity=0.221 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeE
Q 008142 55 FLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKF 134 (576)
Q Consensus 55 i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~~Glk~ 134 (576)
+.+.++.+-.-|+++|+..|.|=--.+.. +..+.| .+..|...++ .+|.. ...||.|++.+|++|+++
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~-----~~~~wG---Y~~~~~~a~~-~~~G~---~~dfk~lV~~~H~~Gi~V 335 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHP-----FGGSWG---YQPLGLYAPT-ARHGS---PDGFAQFVDACHRAGIGV 335 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCC-----CCCCCC---CCCCcCCccC-cccCC---HHHHHHHHHHHHHCCCEE
Confidence 34444444445789999988763211110 000111 1223344455 45654 237999999999999998
Q ss_pred EEEeecCccccccCCCCcccccccCCCcccCCC-ccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHH-Hhh
Q 008142 135 GIHVMRGISTQAFNADTPILDTLKGGAYEDSGR-QWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY-AEW 212 (576)
Q Consensus 135 Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~-~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~w 212 (576)
=+=+-+. .+..+. ..+. .+. |+ .|...|.. ......|. .+.+|..+|++++|+-..+..+ .+.
T Consensus 336 IlD~V~n--H~~~d~-~~l~------~fd--g~~~Ye~~d~~-~g~~~~W~---~~~~N~~~peVr~~li~~a~~Wl~ey 400 (730)
T PRK12568 336 ILDWVSA--HFPDDA-HGLA------QFD--GAALYEHADPR-EGMHRDWN---TLIYNYGRPEVTAYLLGSALEWIEHY 400 (730)
T ss_pred EEEeccc--cCCccc-cccc------cCC--CccccccCCCc-CCccCCCC---CeecccCCHHHHHHHHHHHHHHHHHh
Confidence 6654442 221110 0000 011 11 11111100 00111221 2457999999999997777765 579
Q ss_pred CccEEEecCC
Q 008142 213 GVDFVKHDCV 222 (576)
Q Consensus 213 GvdylK~D~~ 222 (576)
|||.+++|.+
T Consensus 401 hIDG~R~DAv 410 (730)
T PRK12568 401 HLDGLRVDAV 410 (730)
T ss_pred CceEEEEcCH
Confidence 9999999964
No 62
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.38 E-value=11 Score=41.06 Aligned_cols=122 Identities=16% Similarity=0.224 Sum_probs=74.6
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHH
Q 008142 119 GFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAG 198 (576)
Q Consensus 119 Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~ 198 (576)
-|+.+++..|++||++==|+.++... .+.+++-..+....-.. .+.+.+. ..-+|. .-.+|||-||++
T Consensus 116 pLa~~I~~AHkr~l~v~aWf~~~~~a---~~~s~~~~~~p~~~~~~-~~~~~~~------~~~~~~--~~~~ldPg~Pev 183 (418)
T COG1649 116 PLAFVIAEAHKRGLEVHAWFNPYRMA---PPTSPLTKRHPHWLTTK-RPGWVYV------RHQGWG--KRVWLDPGIPEV 183 (418)
T ss_pred hHHHHHHHHHhcCCeeeechhhcccC---CCCChhHhhCCCCcccC-CCCeEEE------ecCCce--eeeEeCCCChHH
Confidence 48999999999999999999987632 12233221111000000 0111111 011111 257999999999
Q ss_pred HHHHHHHH-HHHHhhCccEEEecCC--CC--CCC------------------ChH---H---------HHHHHHHHHhCC
Q 008142 199 RAFLRSLY-QQYAEWGVDFVKHDCV--FG--DDL------------------DIN---E---------ISFVSEVLKELD 243 (576)
Q Consensus 199 ~~~~~~~~-~~~a~wGvdylK~D~~--~~--~~~------------------~~~---~---------y~~m~~al~~~g 243 (576)
++||.+++ +....+-||-|-+|-. +. .++ ++. + +..+..++++.-
T Consensus 184 q~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavK 263 (418)
T COG1649 184 QDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVK 263 (418)
T ss_pred HHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 99997777 5677899999999942 22 111 112 1 123556678888
Q ss_pred CCeEEEcCC
Q 008142 244 RPIVYSLSP 252 (576)
Q Consensus 244 r~i~lsls~ 252 (576)
.++.++++|
T Consensus 264 p~v~~svsp 272 (418)
T COG1649 264 PNVKFSVSP 272 (418)
T ss_pred CCeEEEEcc
Confidence 889999998
No 63
>PLN02960 alpha-amylase
Probab=87.11 E-value=12 Score=44.34 Aligned_cols=143 Identities=13% Similarity=0.188 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeE
Q 008142 55 FLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKF 134 (576)
Q Consensus 55 i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~~Glk~ 134 (576)
+.+.++.+-..|+++||..|.|=---+... ..+.|. +..+...++ .+|-. ...||.|++.+|++||++
T Consensus 415 f~~~~e~~LdYLk~LGvt~IeLmPv~e~~~-----~~swGY---~~~~yfa~~-~~yGt---p~dfk~LVd~aH~~GI~V 482 (897)
T PLN02960 415 FKEFTQKVLPHVKKAGYNAIQLIGVQEHKD-----YSSVGY---KVTNFFAVS-SRFGT---PDDFKRLVDEAHGLGLLV 482 (897)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCC-----CCCCCC---CcccCCCcc-cccCC---HHHHHHHHHHHHHCCCEE
Confidence 333333333457899999887732111100 001111 122223344 34432 137999999999999998
Q ss_pred EEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHH-HhhC
Q 008142 135 GIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY-AEWG 213 (576)
Q Consensus 135 Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~wG 213 (576)
=|=+-+. .++.+...-+. .|..+...|...+- ......|- ...+|..+|+|++|+-+-++.+ .+.+
T Consensus 483 ILDvV~N--H~~~d~~~~L~------~FDG~~~~Yf~~~~--~g~~~~WG---~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 483 FLDIVHS--YAAADEMVGLS------LFDGSNDCYFHSGK--RGHHKRWG---TRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred EEEeccc--ccCCccccchh------hcCCCccceeecCC--CCccCCCC---CcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 6644332 11111000000 01100001221110 01111221 2347899999999997777775 5899
Q ss_pred ccEEEecCC
Q 008142 214 VDFVKHDCV 222 (576)
Q Consensus 214 vdylK~D~~ 222 (576)
||.+++|.+
T Consensus 550 IDGfR~DAV 558 (897)
T PLN02960 550 VDGFQFHSL 558 (897)
T ss_pred CCceeeccc
Confidence 999999975
No 64
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=86.92 E-value=15 Score=41.68 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=30.8
Q ss_pred eeecCCcHHHHHHHHHHHHHHHhhCccEEEecCC
Q 008142 189 MSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (576)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (576)
.-||.++|++++++...++.+.+-|||.+.+|..
T Consensus 162 pdln~~np~v~~~i~~~~~~W~~~giDGfRlDa~ 195 (543)
T TIGR02403 162 ADLNWENPEVREELKDVVNFWRDKGVDGFRLDVI 195 (543)
T ss_pred CccCCCCHHHHHHHHHHHHHHHHcCCCEEEEeee
Confidence 3589999999999999999988899999999965
No 65
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=86.62 E-value=5 Score=47.08 Aligned_cols=134 Identities=17% Similarity=0.207 Sum_probs=71.4
Q ss_pred HhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcc
Q 008142 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGIS 143 (576)
Q Consensus 64 ~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~ 143 (576)
..|+++||+.|.|=--++.. +..+.|. +..+...++ .+|.. ...||.|++.+|++|+++=+=+-+.
T Consensus 258 ~ylk~LG~t~I~LmPi~e~~-----~~~~wGY---~~~~~fa~~-~~~Gt---p~dlk~LVd~aH~~GI~VilDvV~n-- 323 (758)
T PLN02447 258 PRIKALGYNAVQLMAIQEHA-----YYGSFGY---HVTNFFAVS-SRSGT---PEDLKYLIDKAHSLGLRVLMDVVHS-- 323 (758)
T ss_pred HHHHHcCCCEEEECCccccC-----CCCCCCc---CcccCcccc-cccCC---HHHHHHHHHHHHHCCCEEEEEeccc--
Confidence 45789999999874322221 0111121 112223344 35532 1369999999999999985544332
Q ss_pred ccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHHH-hhCccEEEecCC
Q 008142 144 TQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCV 222 (576)
Q Consensus 144 ~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~ 222 (576)
.+..+....+. .+......|...+- ......|. ...+|..+|+++.|+-+.++.+. +.+||.+++|.+
T Consensus 324 H~~~~~~~gl~------~fDg~~~~Yf~~~~--~g~~~~w~---~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV 392 (758)
T PLN02447 324 HASKNTLDGLN------GFDGTDGSYFHSGP--RGYHWLWD---SRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGV 392 (758)
T ss_pred ccccccccccc------ccCCCCccccccCC--CCCcCcCC---CceecCCCHHHHHHHHHHHHHHHHHhCcccccccch
Confidence 11111000000 11110112222211 00111121 23688999999999988888765 699999999964
No 66
>PRK14705 glycogen branching enzyme; Provisional
Probab=86.53 E-value=3.9 Score=50.34 Aligned_cols=132 Identities=17% Similarity=0.225 Sum_probs=70.3
Q ss_pred HhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcc
Q 008142 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGIS 143 (576)
Q Consensus 64 ~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~ 143 (576)
..|+++||..|.|==-.+.. +..+.| .+..+...|+ .+|-. ..+||.|++.+|++||++=|=+-|.=
T Consensus 773 dYlk~LGvt~IeLmPv~e~p-----~~~swG---Y~~~~y~ap~-~ryGt---~~dfk~lVd~~H~~GI~VILD~V~nH- 839 (1224)
T PRK14705 773 DYVKWLGFTHVEFMPVAEHP-----FGGSWG---YQVTSYFAPT-SRFGH---PDEFRFLVDSLHQAGIGVLLDWVPAH- 839 (1224)
T ss_pred HHHHHhCCCEEEECccccCC-----CCCCCC---CCccccCCcC-cccCC---HHHHHHHHHHHHHCCCEEEEEecccc-
Confidence 45688999988662111100 000111 1222334444 45543 23799999999999999866554421
Q ss_pred ccccCCCCcccccccCCCcccCCC-ccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHH-HhhCccEEEecC
Q 008142 144 TQAFNADTPILDTLKGGAYEDSGR-QWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY-AEWGVDFVKHDC 221 (576)
Q Consensus 144 ~~a~~~~spi~~~~~~~~~~~~g~-~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D~ 221 (576)
... +..-+. .+. |+ .|...|.... ....| +-..+|..+|++++|+-.-+..+ .+.+||-|.+|.
T Consensus 840 -~~~--d~~~l~-----~fd--g~~~y~~~d~~~g-~~~~W---g~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Da 905 (1224)
T PRK14705 840 -FPK--DSWALA-----QFD--GQPLYEHADPALG-EHPDW---GTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDA 905 (1224)
T ss_pred -CCc--chhhhh-----hcC--CCcccccCCcccC-CCCCC---CCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEee
Confidence 111 100000 010 11 1222221100 11112 12468999999999997777665 579999999997
Q ss_pred C
Q 008142 222 V 222 (576)
Q Consensus 222 ~ 222 (576)
+
T Consensus 906 v 906 (1224)
T PRK14705 906 V 906 (1224)
T ss_pred h
Confidence 4
No 67
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=86.50 E-value=4.3 Score=46.50 Aligned_cols=133 Identities=18% Similarity=0.271 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhccCCceEEEe--------cccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHH
Q 008142 55 FLQSAEIISQRLRPHGYEYVVV--------DYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKK 126 (576)
Q Consensus 55 i~~~ad~~~~gl~~~Gy~yv~i--------DdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ 126 (576)
..+.|+.+-.-|+++||..|.| |-.|-- +..|..-|. +||-. ..+||.|+|.
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGY----------------q~~g~yAp~-sryGt---Pedfk~fVD~ 222 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGY----------------QGTGYYAPT-SRYGT---PEDFKALVDA 222 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCC----------------Ccceecccc-ccCCC---HHHHHHHHHH
Confidence 4444444444578999998887 444421 223333343 56632 2389999999
Q ss_pred HHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCC-ccccccccccccccccCCCCceeecCCcHHHHHHHHHH
Q 008142 127 VHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGR-QWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSL 205 (576)
Q Consensus 127 ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~-~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~ 205 (576)
+|++|+-+=|=+-|+=.. ++..=+ ..|. |+ -+...|.. +...-.|. .+.-|..+++|+.|+-.-
T Consensus 223 aH~~GIgViLD~V~~HF~----~d~~~L-----~~fd--g~~~~e~~~~~-~~~~~~Wg---~~i~~~gr~EVR~Fll~n 287 (628)
T COG0296 223 AHQAGIGVILDWVPNHFP----PDGNYL-----ARFD--GTFLYEHEDPR-RGEHTDWG---TAIFNYGRNEVRNFLLAN 287 (628)
T ss_pred HHHcCCEEEEEecCCcCC----CCcchh-----hhcC--CccccccCCcc-cccCCCcc---cchhccCcHHHHHHHHHH
Confidence 999998776555453211 111000 0111 11 11222211 11111232 122333499999998555
Q ss_pred HHH-HHhhCccEEEecCC
Q 008142 206 YQQ-YAEWGVDFVKHDCV 222 (576)
Q Consensus 206 ~~~-~a~wGvdylK~D~~ 222 (576)
+.. +.+..||-|++|.+
T Consensus 288 al~Wl~~yHiDGlRvDAV 305 (628)
T COG0296 288 ALYWLEEYHIDGLRVDAV 305 (628)
T ss_pred HHHHHHHhCCcceeeehh
Confidence 544 67899999999986
No 68
>PRK12313 glycogen branching enzyme; Provisional
Probab=85.73 E-value=15 Score=42.45 Aligned_cols=132 Identities=18% Similarity=0.247 Sum_probs=69.3
Q ss_pred HhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEeecCcc
Q 008142 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGIS 143 (576)
Q Consensus 64 ~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~pg~~ 143 (576)
..|+++|++.|.|=--++... ..+.|. +..+...++ .+|-. ...||.|++.+|++||++=|=+-+ .
T Consensus 178 ~yl~~LGv~~i~L~Pi~~~~~-----~~~~GY---~~~~y~~i~-~~~Gt---~~d~k~lv~~~H~~Gi~VilD~V~--n 243 (633)
T PRK12313 178 PYVKEMGYTHVEFMPLMEHPL-----DGSWGY---QLTGYFAPT-SRYGT---PEDFMYLVDALHQNGIGVILDWVP--G 243 (633)
T ss_pred HHHHHcCCCEEEeCchhcCCC-----CCCCCC---CCcCcCcCC-CCCCC---HHHHHHHHHHHHHCCCEEEEEECC--C
Confidence 457889999887633222110 001111 222234444 34432 237999999999999998554333 1
Q ss_pred ccccCCCCcccccccCCCcccCCC-ccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHHH-hhCccEEEecC
Q 008142 144 TQAFNADTPILDTLKGGAYEDSGR-QWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDC 221 (576)
Q Consensus 144 ~~a~~~~spi~~~~~~~~~~~~g~-~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~ 221 (576)
.+..+ ..-+ ..+. +. .|...|-. ......|. ...+|..+|++++|+-..++.+. +.|||.+.+|.
T Consensus 244 H~~~~--~~~~-----~~~~--~~~~~~~~~~~-~~~~~~w~---~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~ 310 (633)
T PRK12313 244 HFPKD--DDGL-----AYFD--GTPLYEYQDPR-RAENPDWG---ALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDA 310 (633)
T ss_pred CCCCC--cccc-----cccC--CCcceeecCCC-CCcCCCCC---CcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcC
Confidence 22111 0000 0010 11 11111100 00001121 24678899999999987788765 68999999995
Q ss_pred C
Q 008142 222 V 222 (576)
Q Consensus 222 ~ 222 (576)
+
T Consensus 311 ~ 311 (633)
T PRK12313 311 V 311 (633)
T ss_pred h
Confidence 4
No 69
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=85.56 E-value=9.8 Score=43.16 Aligned_cols=105 Identities=14% Similarity=0.207 Sum_probs=59.5
Q ss_pred CChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCccc-CCCccccccccccccccccCCCCceeecCCcH
Q 008142 118 KGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYED-SGRQWRAKDIGLKERACAWMQHGFMSVNTKLG 196 (576)
Q Consensus 118 ~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~-~g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p 196 (576)
..||.|++.+|++||++=|=+-+ ..+.. +. .|.. ..+ |..++ ..+.|- ..+|.++|
T Consensus 160 ~e~k~lV~~aH~~Gi~VilD~V~--NH~~~--~~---------~~~~~~~~-y~~~~-----~~~~wg----~~~n~~~~ 216 (542)
T TIGR02402 160 DDLKALVDAAHGLGLGVILDVVY--NHFGP--EG---------NYLPRYAP-YFTDR-----YSTPWG----AAINFDGP 216 (542)
T ss_pred HHHHHHHHHHHHCCCEEEEEEcc--CCCCC--cc---------ccccccCc-cccCC-----CCCCCC----CccccCCC
Confidence 36999999999999997443222 22211 11 0110 011 11111 112232 24788888
Q ss_pred ---HHHHHHHHHHHHH-HhhCccEEEecCCCC-CCCCh-HHHHHHHHHHHhCCCC
Q 008142 197 ---AGRAFLRSLYQQY-AEWGVDFVKHDCVFG-DDLDI-NEISFVSEVLKELDRP 245 (576)
Q Consensus 197 ---~~~~~~~~~~~~~-a~wGvdylK~D~~~~-~~~~~-~~y~~m~~al~~~gr~ 245 (576)
.+++|+-..++.+ .+.|||.+.+|.... ...+. +-.+.+++.+++...+
T Consensus 217 ~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~ 271 (542)
T TIGR02402 217 GSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAE 271 (542)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCC
Confidence 9999987666765 579999999996432 11111 2235677777765433
No 70
>PRK10785 maltodextrin glucosidase; Provisional
Probab=85.44 E-value=17 Score=41.69 Aligned_cols=173 Identities=13% Similarity=0.220 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHc
Q 008142 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAM 130 (576)
Q Consensus 51 se~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~~ 130 (576)
+-+.|.+-+|+ |+++|++.|-|==-...... .|.+..| ...+| .+|.. ...|+.|++.+|++
T Consensus 177 Dl~GI~~kLdY----L~~LGv~~I~L~Pif~s~s~-------hgYd~~D---y~~iD-p~~Gt---~~df~~Lv~~aH~r 238 (598)
T PRK10785 177 DLDGISEKLPY----LKKLGVTALYLNPIFTAPSV-------HKYDTED---YRHVD-PQLGG---DAALLRLRHATQQR 238 (598)
T ss_pred CHHHHHHHHHH----HHHcCCCEEEeCCcccCCCC-------CCcCccc---ccccC-cccCC---HHHHHHHHHHHHHC
Confidence 44666666665 56899888876433322111 1111111 22334 23432 13699999999999
Q ss_pred CCeEEEEeecCccccccCCCCccccccc---CCCcccCC---Ccccc-ccccccccccccCC-CCceeecCCcHHHHHHH
Q 008142 131 GLKFGIHVMRGISTQAFNADTPILDTLK---GGAYEDSG---RQWRA-KDIGLKERACAWMQ-HGFMSVNTKLGAGRAFL 202 (576)
Q Consensus 131 Glk~Giy~~pg~~~~a~~~~spi~~~~~---~~~~~~~g---~~~~~-~di~~~~~~~~~~~-~~~~~lD~t~p~~~~~~ 202 (576)
|||+=|=..+ .+|+. ++|++.... .+.|.... ..|.. ++-. ...| |.. ....-||..+|++++|+
T Consensus 239 GikVilD~V~--NH~~~--~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~--~~~~-w~g~~~lPdLN~~np~v~~~l 311 (598)
T PRK10785 239 GMRLVLDGVF--NHTGD--SHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDG--RALD-WLGYASLPKLDFQSEEVVNEI 311 (598)
T ss_pred CCEEEEEECC--CcCCC--CCHHHHHhhccccccccCCCCCcceeeEECCCC--CcCC-cCCCCcCccccCCCHHHHHHH
Confidence 9997443222 23322 233332110 01111000 01110 0000 0111 221 22346899999999998
Q ss_pred HH----HHHHHHh--hCccEEEecCCCC--CC----CChHHHHHHHHHHHhCCCCeEE
Q 008142 203 RS----LYQQYAE--WGVDFVKHDCVFG--DD----LDINEISFVSEVLKELDRPIVY 248 (576)
Q Consensus 203 ~~----~~~~~a~--wGvdylK~D~~~~--~~----~~~~~y~~m~~al~~~gr~i~l 248 (576)
-. +++.+.+ .|||.+.+|.... +. .+.+-.+.+++++++...++++
T Consensus 312 ~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~l 369 (598)
T PRK10785 312 YRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENPEAYV 369 (598)
T ss_pred HhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhCCCeEE
Confidence 63 6676554 6999999996531 10 1223346788888877665443
No 71
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.06 E-value=0.32 Score=51.77 Aligned_cols=72 Identities=14% Similarity=0.208 Sum_probs=53.1
Q ss_pred CCceeecCCCCccCCCCceeeEEeccCCC-CCCceEECcCCcEEeCCCCceEEeCCCCccCCCCcEEEEecCC-cCccee
Q 008142 493 VGVCLDASPKWKLTSKELRRGSFSKCKRD-ANQMWQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATG-REGISL 570 (576)
Q Consensus 493 ~g~CLd~~~~~~~~~G~~~~v~~w~C~g~-~~Q~W~~~~~G~l~n~~sg~Cldv~~~~t~~~G~~v~~w~c~g-~~~q~~ 570 (576)
..+|||..+..+ .+ .+.+..|.+. .||+|.+.-..+-.+.+..+||+|... + .|.+|.+-.|.. -+-|.|
T Consensus 440 g~~Cl~s~~~~~--~~---~~gl~~C~~s~~nqqwa~~~t~~~~~~~~elCL~v~~~--~-pg~~v~l~~C~~~e~~q~~ 511 (559)
T KOG3738|consen 440 GDNCLDSQGQNS--QE---ALGLASCHGSGGNQQWAFLRTSTQLITHRELCLAVGSN--T-PGSPVALVPCGNNETKQRW 511 (559)
T ss_pred cchhhhhhhccc--cc---CcceeecccCCCCcchhhhhhhhhHHHHHhhhheeecC--C-CCCeEEEEecCCCCCceEE
Confidence 468999877654 34 4779999885 899998733233335678999999763 3 799999999974 467777
Q ss_pred hh
Q 008142 571 ML 572 (576)
Q Consensus 571 ~~ 572 (576)
+.
T Consensus 512 v~ 513 (559)
T KOG3738|consen 512 VE 513 (559)
T ss_pred Ee
Confidence 64
No 72
>PRK05402 glycogen branching enzyme; Provisional
Probab=84.01 E-value=14 Score=43.43 Aligned_cols=141 Identities=16% Similarity=0.230 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeE
Q 008142 55 FLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKF 134 (576)
Q Consensus 55 i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~~Glk~ 134 (576)
+...++.+-..|+++|++.|.|==-.+... ..+.|. +..+...++ .+|-. ...||.|++.+|++||++
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~-----~~~~GY---~~~~y~ai~-~~~Gt---~~dfk~lV~~~H~~Gi~V 331 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPF-----DGSWGY---QPTGYYAPT-SRFGT---PDDFRYFVDACHQAGIGV 331 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCC-----CCCCCC---CcccCCCcC-cccCC---HHHHHHHHHHHHHCCCEE
Confidence 334444333457899999887732221110 001111 222233344 23432 237999999999999997
Q ss_pred EEEeecCccccccCCCCcccccccCCCcccCCC-ccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHHH-hh
Q 008142 135 GIHVMRGISTQAFNADTPILDTLKGGAYEDSGR-QWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EW 212 (576)
Q Consensus 135 Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~-~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a-~w 212 (576)
=|=+-+ ..++.+ ...+. .+. |. .|...|... .....| +...+|..+|++++|+-..++.+. +.
T Consensus 332 ilD~V~--NH~~~~-~~~~~------~~~--~~~~y~~~~~~~-~~~~~w---~~~~~n~~~~~v~~~l~~~~~~W~~e~ 396 (726)
T PRK05402 332 ILDWVP--AHFPKD-AHGLA------RFD--GTALYEHADPRE-GEHPDW---GTLIFNYGRNEVRNFLVANALYWLEEF 396 (726)
T ss_pred EEEECC--CCCCCC-ccchh------ccC--CCcceeccCCcC-CccCCC---CCccccCCCHHHHHHHHHHHHHHHHHh
Confidence 554333 122111 00000 011 11 111111100 011112 123579999999999988787765 69
Q ss_pred CccEEEecCC
Q 008142 213 GVDFVKHDCV 222 (576)
Q Consensus 213 GvdylK~D~~ 222 (576)
|||.+.+|.+
T Consensus 397 ~iDG~R~D~v 406 (726)
T PRK05402 397 HIDGLRVDAV 406 (726)
T ss_pred CCcEEEECCH
Confidence 9999999964
No 73
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=81.50 E-value=21 Score=40.60 Aligned_cols=34 Identities=32% Similarity=0.352 Sum_probs=31.0
Q ss_pred eeecCCcHHHHHHHHHHHHHHHhhCccEEEecCC
Q 008142 189 MSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (576)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (576)
.-||..+|++++++...++.+.+.|||.+.+|..
T Consensus 169 pdLn~~np~V~~~l~~~~~~W~~~GvDGfRlDa~ 202 (551)
T PRK10933 169 ADLNWENPAVRAELKKVCEFWADRGVDGLRLDVV 202 (551)
T ss_pred CccCCCCHHHHHHHHHHHHHHHHCCCcEEEEcch
Confidence 4688999999999999999999999999999964
No 74
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=80.85 E-value=3.7 Score=43.85 Aligned_cols=100 Identities=12% Similarity=0.028 Sum_probs=67.9
Q ss_pred CCccccccCCCcCCC--CceeecCCCCCceEEEee---ccCCCceeecCCCCccCCCCceeeEEeccCC-CCCCceEECc
Q 008142 457 GEPLCLYKSRALLSS--DGEMIYKQQYQGKVHLLA---SKGVGVCLDASPKWKLTSKELRRGSFSKCKR-DANQMWQLNP 530 (576)
Q Consensus 457 ~~~~Cldv~~~~ta~--~~w~c~g~~~Q~w~~~~~---~~~~g~CLd~~~~~~~~~G~~~~v~~w~C~g-~~~Q~W~~~~ 530 (576)
...+|||.-+..... ..-.|.|..+.|-..+.. +.....||.+ +| ..+++--|+- .-+--|++..
T Consensus 488 at~~ClDsMG~~p~g~mglt~CHg~GgNQL~RlN~agQl~qge~CltA-------dg--~~i~~~hC~lgtv~g~WqY~~ 558 (603)
T KOG3737|consen 488 ATAYCLDSMGKTPGGFMGLTPCHGMGGNQLFRLNEAGQLMQGEQCLTA-------DG--SKIMITHCNLGTVKGEWQYFK 558 (603)
T ss_pred ccchhHHhcCCCCCCccccccccCCCCceEEEeccccchhccceeeec-------CC--ceEEEEEeecccccCceehhh
Confidence 356899988876644 677898765444333322 1234679983 66 2789999984 4566899865
Q ss_pred C-CcEEeCCCCceEEeCCCCccCCCCcEEEEecCCc-Cccee
Q 008142 531 S-GALISSYSGLCATVNLVKADVGSGGIRSWIATGR-EGISL 570 (576)
Q Consensus 531 ~-G~l~n~~sg~Cldv~~~~t~~~G~~v~~w~c~g~-~~q~~ 570 (576)
+ -.+.-+.+++|+|+.- .+.+|.+=.|+-+ .-|.|
T Consensus 559 ~tk~~~H~~~~kC~~~se-----~~~qv~l~~Cd~~~~~Qkw 595 (603)
T KOG3737|consen 559 NTKRFTHIPSGKCLDRSE-----VLHQVFLSNCDSSKTTQKW 595 (603)
T ss_pred cchheeeccccccccccc-----hhheeeecccCCCchhhee
Confidence 4 3588888999999974 4677888899743 44544
No 75
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=79.27 E-value=17 Score=43.60 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=45.1
Q ss_pred ecCCcHHHHHHHHHHHHHHH-hhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCCeEEEc
Q 008142 191 VNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSL 250 (576)
Q Consensus 191 lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~i~lsl 250 (576)
++..||.+++|+...++.+. +.|||-+++|-+.+ ++.+-...+++++++...++++--
T Consensus 466 ~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~--~~~~f~~~~~~~l~~i~pdi~l~G 524 (898)
T TIGR02103 466 TATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMGH--HPKAQMLAAREAIKALTPEIYFYG 524 (898)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechhh--CCHHHHHHHHHHHHHhCCCEEEEe
Confidence 47789999999977777765 89999999997643 445667788888888877766543
No 76
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.32 E-value=2.3 Score=45.31 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=53.7
Q ss_pred ceEEEeeccCCCceeecCCCCccCCCCceeeEEeccCC-CCCCceEECcCCcEEeCCCCceEEeCCCCccCCCCcEEEEe
Q 008142 483 GKVHLLASKGVGVCLDASPKWKLTSKELRRGSFSKCKR-DANQMWQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWI 561 (576)
Q Consensus 483 ~w~~~~~~~~~g~CLd~~~~~~~~~G~~~~v~~w~C~g-~~~Q~W~~~~~G~l~n~~sg~Cldv~~~~t~~~G~~v~~w~ 561 (576)
-|..+|.. .+++|||.-+.. +| ..+.+-.|.| +.||..+++..|+|- ..-.||+ | +|..|++--
T Consensus 480 ~WGE~R~~-at~~ClDsMG~~---p~--g~mglt~CHg~GgNQL~RlN~agQl~--qge~Clt------A-dg~~i~~~h 544 (603)
T KOG3737|consen 480 DWGEIRGF-ATAYCLDSMGKT---PG--GFMGLTPCHGMGGNQLFRLNEAGQLM--QGEQCLT------A-DGSKIMITH 544 (603)
T ss_pred cchhccCc-ccchhHHhcCCC---CC--CccccccccCCCCceEEEeccccchh--ccceeee------c-CCceEEEEE
Confidence 34445543 378999987763 44 1788999987 789999999999873 2457987 4 888999999
Q ss_pred cC-CcCcceeh
Q 008142 562 AT-GREGISLM 571 (576)
Q Consensus 562 c~-g~~~q~~~ 571 (576)
|+ |..+-.|.
T Consensus 545 C~lgtv~g~Wq 555 (603)
T KOG3737|consen 545 CNLGTVKGEWQ 555 (603)
T ss_pred eecccccCcee
Confidence 98 44443453
No 77
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=78.01 E-value=24 Score=39.90 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=30.9
Q ss_pred eeecCCcHHHHHHHHHHHHHHHhhCccEEEecCC
Q 008142 189 MSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (576)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (576)
.-+|.++|++++++...++.+.+.|||.+.+|.+
T Consensus 166 pdln~~np~vr~~l~~~~~~w~~~GvDGfRlDav 199 (539)
T TIGR02456 166 PDLNYDNPAVHDAVHDVMRFWLDLGVDGFRLDAV 199 (539)
T ss_pred CccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecH
Confidence 3589999999999999999999999999999975
No 78
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=70.76 E-value=27 Score=40.76 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=27.7
Q ss_pred eeecCCcHHHHHHHHHHHHHH-HhhCccEEEecCC
Q 008142 189 MSVNTKLGAGRAFLRSLYQQY-AEWGVDFVKHDCV 222 (576)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~-a~wGvdylK~D~~ 222 (576)
..|+.+||-+++++-.-++++ .++.||.++.|=.
T Consensus 327 Ntln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa 361 (697)
T COG1523 327 NTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLA 361 (697)
T ss_pred cccccCChHHHHHHHHHHHHHHHHhCCCceeecch
Confidence 478899999999985445665 5899999999964
No 79
>PLN02877 alpha-amylase/limit dextrinase
Probab=69.16 E-value=43 Score=40.56 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=40.2
Q ss_pred cCCcHHHHHHHHHHHHHHH-hhCccEEEecCCCCCCCChHHHHHHHHHHHhC--------CCCeEEEcC
Q 008142 192 NTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDDLDINEISFVSEVLKEL--------DRPIVYSLS 251 (576)
Q Consensus 192 D~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~--------gr~i~lsls 251 (576)
...||.+++|+-.-++++. ++|||.+++|-..+ ++.+....++.+|++. |+.|+|-.-
T Consensus 530 Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~--i~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGE 596 (970)
T PLN02877 530 ASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGH--LMKRTMVRAKDALQSLTLERDGVDGSSIYLYGE 596 (970)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCEEEEEcccc--ccHHHHHHHHHHHHHHhhhhcccCCCceEEEEe
Confidence 5678999999866667655 79999999997653 3445555666666665 455665443
No 80
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=67.75 E-value=39 Score=41.59 Aligned_cols=57 Identities=19% Similarity=0.206 Sum_probs=41.6
Q ss_pred eecCCcHHHHHHHHHHHHHHH-hhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCCeEE
Q 008142 190 SVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVY 248 (576)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~i~l 248 (576)
.++..||.+++|+-..++.+. +.|||.+++|.+.. ++.+....++.++++....+++
T Consensus 611 ~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~--~d~~~~~~~~~~l~~~dP~~~l 668 (1111)
T TIGR02102 611 RLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGD--HDAASIEIAYKEAKAINPNIIM 668 (1111)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEecccc--CCHHHHHHHHHHHHHhCcCEEE
Confidence 477899999999976677765 79999999998642 4445556666777666555544
No 81
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=66.21 E-value=10 Score=35.48 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=37.2
Q ss_pred CCCceeecCCCCccCCCCceeeEEeccCCC-CCCceEE--CcCC--cEEeCCCCceEEeCCCCccCCCCcEEEEec
Q 008142 492 GVGVCLDASPKWKLTSKELRRGSFSKCKRD-ANQMWQL--NPSG--ALISSYSGLCATVNLVKADVGSGGIRSWIA 562 (576)
Q Consensus 492 ~~g~CLd~~~~~~~~~G~~~~v~~w~C~g~-~~Q~W~~--~~~G--~l~n~~sg~Cldv~~~~t~~~G~~v~~w~c 562 (576)
..+.||.+.. +| .++.-.|+.. ..|.|++ +.+| +|++..+|+|+.+.......-...+.+=.|
T Consensus 60 ~~~~CL~~~~-----~G---~~~~~~C~~~~~~q~F~iiPtttgAVQIks~~~~~Cl~~~~~~~~~~~~~i~l~~C 127 (150)
T PF03498_consen 60 KTGTCLAAYG-----NG---VFHYKSCDQDNLEQVFSIIPTTTGAVQIKSLSTGECLQTFNNSRTPIYYSIGLTPC 127 (150)
T ss_dssp TTSEEEEEET-----TC---EEEE--TTTCHGHH-EEEEEBTTS-EEEEETTT--EEEE-STTSS-SSEEEEEE--
T ss_pred CCCcceeecC-----CC---eEeecccCCCChhceEEEEEcCCCcEEEEecCCCceEEecCCCceeEEeeEEeeeC
Confidence 4677999843 45 2443349875 3799997 5677 489999999999876543112346788889
No 82
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=65.48 E-value=39 Score=42.19 Aligned_cols=57 Identities=16% Similarity=0.061 Sum_probs=39.1
Q ss_pred eecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCCCChHHH-HHHHHHHHhCCCCe
Q 008142 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEI-SFVSEVLKELDRPI 246 (576)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y-~~m~~al~~~gr~i 246 (576)
.+|..||.+++++...++.+.+.|||.+.+|-...-.-++..+ ..++..+++...+.
T Consensus 312 ~~n~~~p~v~~~i~d~lr~Wv~~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~ 369 (1221)
T PRK14510 312 LPNLERPFILRLPMDVLRSWAKRGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDP 369 (1221)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCEEEEechhhhccCccchHHHHHHHHHHhCCCc
Confidence 4677899999999888888888999999999643210012223 55566666654433
No 83
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=64.06 E-value=35 Score=39.91 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=29.2
Q ss_pred eecCCcHHHHHHHHHHHHHHH-hhCccEEEecCCC
Q 008142 190 SVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVF 223 (576)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~ 223 (576)
.+|.++|.+++|+-..++.+. +.|||.+.+|...
T Consensus 310 ~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~ 344 (688)
T TIGR02100 310 TLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLAT 344 (688)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechh
Confidence 588999999999977777766 7999999999754
No 84
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=63.75 E-value=34 Score=37.02 Aligned_cols=80 Identities=13% Similarity=0.216 Sum_probs=52.0
Q ss_pred cCCCHHHHHHHHHHH---HHhhccCCceEEEecc---cccccccCCccccCCCcc-ccCCCCCceeCCCCCCCCCCCCCh
Q 008142 48 WTISEEEFLQSAEII---SQRLRPHGYEYVVVDY---LWYRRKVKGAYVDSLGFD-VIDEWGRMIPDPDRWPSSRGGKGF 120 (576)
Q Consensus 48 ~~ise~~i~~~ad~~---~~gl~~~Gy~yv~iDd---gW~~~~~~g~~~~~~~~~-~~d~~G~~~~d~~kFP~~~~~~Gl 120 (576)
..+|+++|.+..+.+ +...+++||+-|.|=. ||--.. .. |.... -.|+||--.-+..||+
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~q----FL-Sp~~N~RtDeyGGslenR~rf~-------- 204 (382)
T cd02931 138 RELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQ----FT-ISLFNKRTDKYGGSLENRLRFA-------- 204 (382)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHH----hc-CCccCCCCCcCCCCHHHHhHHH--------
Confidence 468999999999865 3567889999999976 662100 00 00000 1367776455556776
Q ss_pred HHHHHHHHHc---CCeEEEEeec
Q 008142 121 TEVAKKVHAM---GLKFGIHVMR 140 (576)
Q Consensus 121 k~la~~ih~~---Glk~Giy~~p 140 (576)
..+++.|++. ++.+|+=+.+
T Consensus 205 ~eii~~vr~~~g~~f~v~vri~~ 227 (382)
T cd02931 205 IEIVEEIKARCGEDFPVSLRYSV 227 (382)
T ss_pred HHHHHHHHHhcCCCceEEEEEec
Confidence 6788888874 6777777665
No 85
>PRK03705 glycogen debranching enzyme; Provisional
Probab=62.97 E-value=36 Score=39.65 Aligned_cols=34 Identities=15% Similarity=0.065 Sum_probs=29.1
Q ss_pred eecCCcHHHHHHHHHHHHHHH-hhCccEEEecCCC
Q 008142 190 SVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVF 223 (576)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a-~wGvdylK~D~~~ 223 (576)
.++..+|.+++|+-..++.+. +.|||.+++|-..
T Consensus 305 ~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~ 339 (658)
T PRK03705 305 TLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLAT 339 (658)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHh
Confidence 578899999999988888876 5899999999743
No 86
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=61.89 E-value=72 Score=33.30 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=32.8
Q ss_pred CCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCC
Q 008142 186 HGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (576)
Q Consensus 186 ~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (576)
++-.|||+-+|.+=+|=..+++..++.|||=|.+|++
T Consensus 182 ~~ehWVd~y~~~~WeYNvtIAKEa~~fGfdEiQFDYI 218 (400)
T COG1306 182 DGEHWVDAYDKNLWEYNVTIAKEAAKFGFDEIQFDYI 218 (400)
T ss_pred cceeeecccchhhhhhhHHHHHHHHHcCccceeeeEE
Confidence 3457999999999999888899999999999999986
No 87
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=61.14 E-value=45 Score=33.23 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCC----eEEEcC
Q 008142 200 AFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRP----IVYSLS 251 (576)
Q Consensus 200 ~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~----i~lsls 251 (576)
+.+....+...+.|.||||.-.-.....+.+..+.|++++.++..| |++|-.
T Consensus 146 ~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGG 201 (236)
T PF01791_consen 146 DLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASGG 201 (236)
T ss_dssp HHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEESS
T ss_pred HHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeCC
Confidence 3556666778899999999987533334456788999999999888 887753
No 88
>PLN03244 alpha-amylase; Provisional
Probab=60.23 E-value=24 Score=41.51 Aligned_cols=91 Identities=12% Similarity=0.164 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHH
Q 008142 119 GFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAG 198 (576)
Q Consensus 119 Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~ 198 (576)
+||.|+|.+|++|+++=|=+-+. .++ .+..-.+. .+..+...|...+- ......| + -..+|..+|+|
T Consensus 442 DLK~LVD~aH~~GI~VILDvV~N-H~~-~d~~~GL~------~fDGt~~~Yf~~~~--~g~~~~W--G-s~~fnyg~~EV 508 (872)
T PLN03244 442 DFKRLVDEAHGLGLLVFLDIVHS-YAA-ADEMVGLS------LFDGSNDCYFHTGK--RGHHKHW--G-TRMFKYGDLDV 508 (872)
T ss_pred HHHHHHHHHHHCCCEEEEEecCc-cCC-Cccccchh------hcCCCccceeccCC--CCccCCC--C-CceecCCCHHH
Confidence 79999999999999886544331 111 11000000 01100001222110 0011122 2 24678999999
Q ss_pred HHHHHHHHHHH-HhhCccEEEecCC
Q 008142 199 RAFLRSLYQQY-AEWGVDFVKHDCV 222 (576)
Q Consensus 199 ~~~~~~~~~~~-a~wGvdylK~D~~ 222 (576)
+.|+-+-++.+ .+.+||.+++|.+
T Consensus 509 r~FLLsna~yWleEyhIDGFRfDaV 533 (872)
T PLN03244 509 LHFLISNLNWWITEYQIDGFQFHSL 533 (872)
T ss_pred HHHHHHHHHHHHHHhCcCcceeecc
Confidence 99997777775 5999999999975
No 89
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=60.12 E-value=30 Score=39.38 Aligned_cols=273 Identities=17% Similarity=0.238 Sum_probs=122.4
Q ss_pred CCCCCCCCceEeccccccCcCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCC
Q 008142 29 VPVRASSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDP 108 (576)
Q Consensus 29 ~~~~~~~pPmGWnSW~~~~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~ 108 (576)
+..|.+-|=.||=|= |....+.++..+.++.|.+ +..+.++.= -|+-.... .. -. +.-.++
T Consensus 96 SsdW~~fPRYGfls~--f~~~~~~~~~~~~i~~L~~----yHIN~~QFY-DW~~rH~~-------Pl--~~--~~~~~~- 156 (559)
T PF13199_consen 96 SSDWTRFPRYGFLSD--FDKSKSAEDIEAEIDQLNR----YHINGLQFY-DWMYRHHK-------PL--PG--TNGQPD- 156 (559)
T ss_dssp -SSTTSS--EEEE-----GGGGGHHHHHHHHHHHHH----TT--EEEET-S--SBTTB--------S---S--SS-EEE-
T ss_pred cCCcccCCcceEecC--CCCcCCchhHHHHHHHHHh----hCcCeEEEE-eeccccCC-------cC--CC--CCCchh-
Confidence 346777777787663 4444577788888877643 333444432 24432110 00 00 001111
Q ss_pred CCCCCCCCC----CChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccC
Q 008142 109 DRWPSSRGG----KGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWM 184 (576)
Q Consensus 109 ~kFP~~~~~----~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~ 184 (576)
..|++..+. .=+|..++.+|++|||.=.|.+-.-..-.. ...++..+ ++.|...+.. ..+. -...-.|.
T Consensus 157 ~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~-~~~gv~~e--W~ly~d~~~~--~~~~--~~l~~~w~ 229 (559)
T PF13199_consen 157 QTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANNNY-EEDGVSPE--WGLYKDDSHS--NQDT--YDLPDGWP 229 (559)
T ss_dssp -TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEETT---S--SS-G--GBEEESSSBT--SB-E--EEETT-E-
T ss_pred hhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccccCc-ccccCCch--hhhhhccCCC--ccce--eecCcccc
Confidence 244432110 137999999999999999997653211100 01122211 1222221110 0000 00001121
Q ss_pred CCCceeecCCcHHHHHHH-HHHHHHHHhhCccEEEecCCCCC-------C--C-C-hHHHHHHHHHHHhC--CCCeEEEc
Q 008142 185 QHGFMSVNTKLGAGRAFL-RSLYQQYAEWGVDFVKHDCVFGD-------D--L-D-INEISFVSEVLKEL--DRPIVYSL 250 (576)
Q Consensus 185 ~~~~~~lD~t~p~~~~~~-~~~~~~~a~wGvdylK~D~~~~~-------~--~-~-~~~y~~m~~al~~~--gr~i~lsl 250 (576)
...|.+||.+|+=+.|| ++.-+.+...|||.+-+|=+... . . + ++.|..+-+++++. +.++++.-
T Consensus 230 -s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k~lv~N~ 308 (559)
T PF13199_consen 230 -SDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDKYLVFNA 308 (559)
T ss_dssp --EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTSEEEEB-
T ss_pred -cceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCCceeeec
Confidence 22689999999999998 55556788999999999966431 1 1 1 24566666666543 35677654
Q ss_pred CCCCCCCchhhh---hhcccccEEEEecCCCCChhhHHHHhhhhhhhh-hhh--hhcccCCCCCCcCCCCCCcCCccCCC
Q 008142 251 SPGTGVTPAMAK---EVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFS-AAN--MIGAKGLQGKSWPDLDMLPLGWLTDP 324 (576)
Q Consensus 251 s~~~~~~p~~a~---~~~~~~n~~Ris~D~~~~W~~~~~~~~~~~~~~-~~~--~~~~~g~~~~~wnDpDmL~~g~~~~~ 324 (576)
..+-. ....+. .-.-|..+| |..++..++.+.++..|.+. ..+ ++-+ .|...
T Consensus 309 V~~~g-~~~~a~~~~~d~lY~EvW----~~~~~Y~~Lk~~i~~~r~~~~~~gk~~V~A------AYmn~----------- 366 (559)
T PF13199_consen 309 VSGYG-IEQIAKTSKVDFLYNEVW----DDYDTYGDLKRIIDQNRKYTSSGGKSTVVA------AYMNY----------- 366 (559)
T ss_dssp GGGTT-HHHHTT-S--SSEEEE------SBS-BHHHHHHHHHHHHHHH---S--EEEE----------------------
T ss_pred cCccc-hhhhhcccccceeeeecc----cccccHHHHHHHHHHHhhhhccccchhhhH------HHhhh-----------
Confidence 32100 001110 001266777 44567888888888777773 111 1100 11111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCeeeccC
Q 008142 325 GSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGD 360 (576)
Q Consensus 325 ~~~~g~~~~~~lT~~E~rt~~slwa~~~sPLi~g~D 360 (576)
.-|+.-.-+-.++.|.-|+.|.+|++
T Consensus 367 ----------fn~~~vlLtdA~i~A~Gg~HlelGd~ 392 (559)
T PF13199_consen 367 ----------FNTPSVLLTDAVIFASGGSHLELGDG 392 (559)
T ss_dssp ------------HHHHHHHHHHHHHTT-EEE-ETTS
T ss_pred ----------ccchhhHHHHHHHHHCCCceeeecCC
Confidence 12456666677777888999999884
No 90
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=58.92 E-value=22 Score=35.90 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=45.9
Q ss_pred CceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHhCCC-CeEEEc
Q 008142 187 GFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDR-PIVYSL 250 (576)
Q Consensus 187 ~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr-~i~lsl 250 (576)
....||..+|.+++++...++.+.+-|||.+++|.... +..+..+.+.+.+++... .+++..
T Consensus 135 ~~~dln~~n~~v~~~i~~~~~~w~~~giDGfR~D~~~~--~~~~~~~~~~~~~~~~~~~~~~i~E 197 (316)
T PF00128_consen 135 DLPDLNYENPEVREYIIDVLKFWIEEGIDGFRLDAAKH--IPKEFWKEFRDEVKEEKPDFFLIGE 197 (316)
T ss_dssp TSEEBETTSHHHHHHHHHHHHHHHHTTESEEEETTGGG--SSHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred ccchhhhhhhhhhhhhcccccchhhceEeEEEEccccc--cchhhHHHHhhhhhhhccccceeee
Confidence 34689999999999998899999999999999998642 344555667777765433 344443
No 91
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=58.24 E-value=9.2 Score=36.97 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=44.0
Q ss_pred cCcCCCHHHHHHHHHHHHHhhccCCceE-EEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHH
Q 008142 46 FCWTISEEEFLQSAEIISQRLRPHGYEY-VVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVA 124 (576)
Q Consensus 46 ~~~~ise~~i~~~ad~~~~gl~~~Gy~y-v~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la 124 (576)
|....+.+.-.++|+.+-+.+++.+-.+ +.||=-.... .....+....-. -++.++
T Consensus 63 f~~~~~~~~a~~qA~~f~~~~~~~~~~~~~~lD~E~~~~------------------~~~~~~~~~~~~-----~~~~f~ 119 (191)
T cd06414 63 YSYAVTVAEAREEAEFVLRLIKGYKLSYPVYYDLEDETQ------------------LGAGLSKDQRTD-----IANAFC 119 (191)
T ss_pred EEEeCCHHHHHHHHHHHHHHhhccCCCCCeEEEeecCCC------------------CCCCCCHHHHHH-----HHHHHH
Confidence 4434566777888888766677665443 4677322110 000011111111 478899
Q ss_pred HHHHHcCCeEEEEeecCc
Q 008142 125 KKVHAMGLKFGIHVMRGI 142 (576)
Q Consensus 125 ~~ih~~Glk~Giy~~pg~ 142 (576)
+.|++.|.+++||+.+..
T Consensus 120 ~~v~~~G~~~~iY~~~~~ 137 (191)
T cd06414 120 ETIEAAGYYPGIYANLSW 137 (191)
T ss_pred HHHHHcCCCeEEEecHHH
Confidence 999999999999987743
No 92
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=57.12 E-value=16 Score=36.53 Aligned_cols=140 Identities=16% Similarity=0.253 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCC-CCCCCCCCCCChHHHHHHHH
Q 008142 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDP-DRWPSSRGGKGFTEVAKKVH 128 (576)
Q Consensus 50 ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~-~kFP~~~~~~Glk~la~~ih 128 (576)
++++.++.-+...-..|...||+.|.+=+ .| +...+..+. --||+ .=+.+++..+.
T Consensus 67 ls~~~v~~~lq~~i~~le~~G~d~illlC-------TG------------~F~~l~~~~~lleP~----ril~~lV~al~ 123 (221)
T PF07302_consen 67 LSKKKVEPRLQACIAQLEAQGYDVILLLC-------TG------------EFPGLTARNPLLEPD----RILPPLVAALV 123 (221)
T ss_pred EEHHHHHHHHHHHHHHHHHCCCCEEEEec-------cC------------CCCCCCCCcceeehH----HhHHHHHHHhc
Confidence 68888887776554567889999887732 11 111222111 23454 23678888887
Q ss_pred HcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHH
Q 008142 129 AMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQ 208 (576)
Q Consensus 129 ~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~ 208 (576)
.. .+.||-+ |-....+. .. .+|..- .. +-.+....|-+. ..+-+..-.+.
T Consensus 124 ~~-~~vGViv-P~~eQ~~~-----~~------------~kW~~l--~~--------~~~~a~asPy~~-~~~~l~~Aa~~ 173 (221)
T PF07302_consen 124 GG-HQVGVIV-PLPEQIAQ-----QA------------EKWQPL--GN--------PVVVAAASPYEG-DEEELAAAARE 173 (221)
T ss_pred CC-CeEEEEe-cCHHHHHH-----HH------------HHHHhc--CC--------CeEEEEeCCCCC-CHHHHHHHHHH
Confidence 76 8999963 32111000 00 011100 00 000111222211 23445555688
Q ss_pred HHhhCccEEEecCCCCCCCChHHH-HHHHHHHH-hCCCCeEEEc
Q 008142 209 YAEWGVDFVKHDCVFGDDLDINEI-SFVSEVLK-ELDRPIVYSL 250 (576)
Q Consensus 209 ~a~wGvdylK~D~~~~~~~~~~~y-~~m~~al~-~~gr~i~lsl 250 (576)
++++|.|+|=+||+. | +.|++.++ ++|.|++++-
T Consensus 174 L~~~gadlIvLDCmG--------Yt~~~r~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 174 LAEQGADLIVLDCMG--------YTQEMRDIVQRALGKPVLLSR 209 (221)
T ss_pred HHhcCCCEEEEECCC--------CCHHHHHHHHHHhCCCEEeHH
Confidence 999999999999985 4 56888875 4899999875
No 93
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=56.96 E-value=1.5e+02 Score=28.64 Aligned_cols=20 Identities=20% Similarity=0.074 Sum_probs=17.2
Q ss_pred ChHHHHHHHHHcCCeEEEEe
Q 008142 119 GFTEVAKKVHAMGLKFGIHV 138 (576)
Q Consensus 119 Glk~la~~ih~~Glk~Giy~ 138 (576)
-++.-.+.+++.||++|+|.
T Consensus 43 ~~~~n~~~A~~aGl~vG~Yh 62 (192)
T cd06522 43 YAASQIANAKAAGLKVSAYH 62 (192)
T ss_pred HHHHHHHHHHHCCCeeEEEE
Confidence 36677889999999999996
No 94
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=55.46 E-value=29 Score=38.63 Aligned_cols=54 Identities=22% Similarity=0.123 Sum_probs=41.8
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHh-hCccEEEecCCCCCCCChHHHHHHHHHHHhCC
Q 008142 188 FMSVNTKLGAGRAFLRSLYQQYAE-WGVDFVKHDCVFGDDLDINEISFVSEVLKELD 243 (576)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~-wGvdylK~D~~~~~~~~~~~y~~m~~al~~~g 243 (576)
+.-||..+|++++++...++.+.+ .|||.+++|...+ +.++-...+.+++++..
T Consensus 200 lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~--v~~~f~~~~~~~~~~~~ 254 (479)
T PRK09441 200 GADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKH--IDAWFIKEWIEHVREVA 254 (479)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcC--CCHHHHHHHHHHHHHhc
Confidence 346889999999999888888876 9999999998643 34455566777776554
No 95
>KOG3340 consensus Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=53.77 E-value=20 Score=37.68 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=21.1
Q ss_pred hHHHHHHHHHcCCeEEEEeecCc
Q 008142 120 FTEVAKKVHAMGLKFGIHVMRGI 142 (576)
Q Consensus 120 lk~la~~ih~~Glk~Giy~~pg~ 142 (576)
.++|+..+++.+++||||..++-
T Consensus 152 V~EL~~A~rk~dirfGLY~SlfE 174 (454)
T KOG3340|consen 152 VGELASAIRKRDIRFGLYYSLFE 174 (454)
T ss_pred HHHHHHHHHhcCcceeEeecHHH
Confidence 68999999999999999999864
No 96
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=53.74 E-value=17 Score=35.13 Aligned_cols=67 Identities=10% Similarity=0.132 Sum_probs=43.0
Q ss_pred cCcCCCHHHHHHHHHHHHHhhccCCce---EEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHH
Q 008142 46 FCWTISEEEFLQSAEIISQRLRPHGYE---YVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTE 122 (576)
Q Consensus 46 ~~~~ise~~i~~~ad~~~~gl~~~Gy~---yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~ 122 (576)
|....+.++..+.|+.+.+.++..|+. .+.|| ++.. . + ...... -++.
T Consensus 63 f~~~~~~~~a~~eA~~f~~~~~~~~~~~~~~~~lD--~E~~---------------~--~-----~~~~~~-----~~~~ 113 (192)
T cd06522 63 YAHYTSAADAQAEARYFANTAKSLGLSKNTVMVAD--MEDS---------------S--S-----SGNATA-----NVNA 113 (192)
T ss_pred EEecCChHHHHHHHHHHHHHHHHcCCCCCCceEEE--eecC---------------C--C-----cchHHH-----HHHH
Confidence 444457778888888876666666543 35677 3221 0 0 001111 4689
Q ss_pred HHHHHHHcCC-eEEEEeecC
Q 008142 123 VAKKVHAMGL-KFGIHVMRG 141 (576)
Q Consensus 123 la~~ih~~Gl-k~Giy~~pg 141 (576)
+.+.|++.|. +++||..+-
T Consensus 114 F~~~v~~~g~~~~~iY~~~~ 133 (192)
T cd06522 114 FWQTMKAAGYKNTDVYTSAS 133 (192)
T ss_pred HHHHHHHcCCCCcEEEccHH
Confidence 9999999998 899998763
No 97
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=53.28 E-value=81 Score=32.06 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=41.6
Q ss_pred eecCCcHHHHHHHHHHHHHHHhhCccEEEecCCC--CC---C-CChHHHHHHHHHHHhCC-CCeEEEcC
Q 008142 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF--GD---D-LDINEISFVSEVLKELD-RPIVYSLS 251 (576)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~--~~---~-~~~~~y~~m~~al~~~g-r~i~lsls 251 (576)
.||.|||=+..--+...+--++-|+.||++-=-. .. . +..+.+....+.+.+.+ +.||+..-
T Consensus 70 vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~~~~~iflttG 138 (249)
T PF02571_consen 70 VIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKELGGGRIFLTTG 138 (249)
T ss_pred EEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhcCCCCEEEeCc
Confidence 6899999888766666666779999999987321 11 1 11234555556666666 77888773
No 98
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=52.83 E-value=12 Score=36.28 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHcCCeEEEEeecC
Q 008142 119 GFTEVAKKVHAMGLKFGIHVMRG 141 (576)
Q Consensus 119 Glk~la~~ih~~Glk~Giy~~pg 141 (576)
-++.+++.+++.|.++|||+.+.
T Consensus 111 ~~~~f~~~~~~~G~~~~iYt~~~ 133 (196)
T cd06416 111 FLQELVSAAKALGLKVGIYSSQY 133 (196)
T ss_pred HHHHHHHHHHHhCCeEEEEcCcc
Confidence 47889999999999999999874
No 99
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=52.79 E-value=1.9e+02 Score=30.07 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=26.4
Q ss_pred cCCCHHHHHHHHHHH---HHhhccCCceEEEeccc
Q 008142 48 WTISEEEFLQSAEII---SQRLRPHGYEYVVVDYL 79 (576)
Q Consensus 48 ~~ise~~i~~~ad~~---~~gl~~~Gy~yv~iDdg 79 (576)
..+|+++|.+..+.+ ++.++++||+-|.|-.+
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~ 163 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGA 163 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcch
Confidence 468999999999865 35678899999999764
No 100
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=51.60 E-value=16 Score=35.58 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCcc
Q 008142 119 GFTEVAKKVHAMGLKFGIHVMRGIS 143 (576)
Q Consensus 119 Glk~la~~ih~~Glk~Giy~~pg~~ 143 (576)
....++++||++|||+|+=+.||+.
T Consensus 100 ~~~~lv~~ir~~Gmk~G~alkPgT~ 124 (224)
T KOG3111|consen 100 KPAELVEKIREKGMKVGLALKPGTP 124 (224)
T ss_pred CHHHHHHHHHHcCCeeeEEeCCCCc
Confidence 4689999999999999999988764
No 101
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=51.28 E-value=1.1e+02 Score=32.24 Aligned_cols=84 Identities=18% Similarity=0.122 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCcccc--ccccccccccccCCCCceeecCCcHHH
Q 008142 121 TEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRA--KDIGLKERACAWMQHGFMSVNTKLGAG 198 (576)
Q Consensus 121 k~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~--~di~~~~~~~~~~~~~~~~lD~t~p~~ 198 (576)
+.-++.+|+.|-++=-|+.-|..- +-.|- |.+ .|.. .+. +-...-.| + +-++||.++|+-
T Consensus 84 ~~~i~~Lk~~g~~viaYlSvGe~E----~~R~y--------~~~---~~~~~~~~~-l~~~n~~W-~-g~~~vd~~~~~W 145 (315)
T TIGR01370 84 PEEIVRAAAAGRWPIAYLSIGAAE----DYRFY--------WQK---GWKVNAPAW-LGNEDPDW-P-GNYDVKYWDPEW 145 (315)
T ss_pred HHHHHHHHhCCcEEEEEEEchhcc----ccchh--------hhh---hhhcCCHHH-hCCCCCCC-C-CceeEecccHHH
Confidence 345567999999998898877521 11110 000 0000 010 11111123 2 348999999999
Q ss_pred HHHHHHHHHHHHhhCccEEEecCC
Q 008142 199 RAFLRSLYQQYAEWGVDFVKHDCV 222 (576)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~ 222 (576)
++++...++.+.+-|||.|=+|.+
T Consensus 146 ~~il~~rl~~l~~kGfDGvfLD~l 169 (315)
T TIGR01370 146 KAIAFSYLDRVIAQGFDGVYLDLI 169 (315)
T ss_pred HHHHHHHHHHHHHcCCCeEeeccc
Confidence 999977788889999999999976
No 102
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=51.27 E-value=61 Score=34.44 Aligned_cols=73 Identities=14% Similarity=0.214 Sum_probs=47.5
Q ss_pred cCCCHHHHHHHHHHH---HHhhccCCceEEEecccc--------cccccCCccccCCCccccCCCCCceeCCCCCCCCCC
Q 008142 48 WTISEEEFLQSAEII---SQRLRPHGYEYVVVDYLW--------YRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRG 116 (576)
Q Consensus 48 ~~ise~~i~~~ad~~---~~gl~~~Gy~yv~iDdgW--------~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~ 116 (576)
..+|+++|.+..+.+ +..++.+||+-|.|=.+- ....++. .|+||--.-+..||+
T Consensus 130 ~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R----------tD~yGGslenR~Rf~---- 195 (337)
T PRK13523 130 VEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKR----------TDEYGGSPENRYRFL---- 195 (337)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCc----------CCCCCCCHHHHHHHH----
Confidence 469999999999866 356888999999987652 2211111 366764344445666
Q ss_pred CCChHHHHHHHHHc-CCeEEEEe
Q 008142 117 GKGFTEVAKKVHAM-GLKFGIHV 138 (576)
Q Consensus 117 ~~Glk~la~~ih~~-Glk~Giy~ 138 (576)
..+++.|++. .+.+||=+
T Consensus 196 ----~eii~~ir~~~~~~v~vRi 214 (337)
T PRK13523 196 ----REIIDAVKEVWDGPLFVRI 214 (337)
T ss_pred ----HHHHHHHHHhcCCCeEEEe
Confidence 5677788775 44555543
No 103
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=48.62 E-value=78 Score=34.06 Aligned_cols=76 Identities=21% Similarity=0.321 Sum_probs=51.1
Q ss_pred CcCCCHHHHHHHHHHHH---HhhccCCceEEEe--------cccccccccCCccccCCCccccCCCCCceeCCCCCCCCC
Q 008142 47 CWTISEEEFLQSAEIIS---QRLRPHGYEYVVV--------DYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSR 115 (576)
Q Consensus 47 ~~~ise~~i~~~ad~~~---~gl~~~Gy~yv~i--------DdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~ 115 (576)
-..+|+++|.++.+.++ ...+++||+-|.| |-++....++. .|+||--.-|..||+
T Consensus 136 pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~R----------tD~YGGSlENR~Rf~--- 202 (363)
T COG1902 136 PRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKR----------TDEYGGSLENRARFL--- 202 (363)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCC----------CCccCCcHHHHHHHH---
Confidence 34699999999998763 4678899998887 33443322211 378886667778888
Q ss_pred CCCChHHHHHHHHH---cCCeEEEEeec
Q 008142 116 GGKGFTEVAKKVHA---MGLKFGIHVMR 140 (576)
Q Consensus 116 ~~~Glk~la~~ih~---~Glk~Giy~~p 140 (576)
.++++.|++ ..+-+|+=++|
T Consensus 203 -----~EVv~aVr~~vg~~~~vg~Rls~ 225 (363)
T COG1902 203 -----LEVVDAVREAVGADFPVGVRLSP 225 (363)
T ss_pred -----HHHHHHHHHHhCCCceEEEEECc
Confidence 567777766 34446666655
No 104
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=48.32 E-value=34 Score=34.81 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhCccEEEecCCCC-----CC--CChHHHHHHHHHHHhCCCCeEEEcCC
Q 008142 199 RAFLRSLYQQYAEWGVDFVKHDCVFG-----DD--LDINEISFVSEVLKELDRPIVYSLSP 252 (576)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~-----~~--~~~~~y~~m~~al~~~gr~i~lsls~ 252 (576)
++|..++++++..||||-|-+|--.. +. .-|...+++++..+..|..|++.+.|
T Consensus 120 ~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk~~Gk~f~itMAP 180 (332)
T COG3469 120 QAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKNQGKNFFITMAP 180 (332)
T ss_pred HHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHHhcCCceEEEecC
Confidence 67889999999999999999996321 11 22334566777777889999999876
No 105
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=46.05 E-value=93 Score=33.18 Aligned_cols=75 Identities=20% Similarity=0.332 Sum_probs=48.3
Q ss_pred CcCCCHHHHHHHHHHH---HHhhccCCceEEEecccc--------cccccCCccccCCCccccCCCCCceeCCCCCCCCC
Q 008142 47 CWTISEEEFLQSAEII---SQRLRPHGYEYVVVDYLW--------YRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSR 115 (576)
Q Consensus 47 ~~~ise~~i~~~ad~~---~~gl~~~Gy~yv~iDdgW--------~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~ 115 (576)
-..+|+++|.+..+.+ +..++.+||+-|.|=.+- ....++. .|+||--..+..||+
T Consensus 131 p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R----------~D~yGGslenR~r~~--- 197 (353)
T cd04735 131 PRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRR----------TDEWGGSLENRMRFP--- 197 (353)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCC----------CcccCCcHHHHHHHH---
Confidence 3569999999999865 356888999999886542 2211111 367764344656766
Q ss_pred CCCChHHHHHHHHHc-------CCeEEEEee
Q 008142 116 GGKGFTEVAKKVHAM-------GLKFGIHVM 139 (576)
Q Consensus 116 ~~~Glk~la~~ih~~-------Glk~Giy~~ 139 (576)
..+++.|++. .+.+|+=+.
T Consensus 198 -----~eii~~vr~~vg~~~~~~~~v~~R~s 223 (353)
T cd04735 198 -----LAVVKAVQEVIDKHADKDFILGYRFS 223 (353)
T ss_pred -----HHHHHHHHHHhccccCCCceEEEEEC
Confidence 5677777763 455565544
No 106
>PRK06852 aldolase; Validated
Probab=45.94 E-value=1.1e+02 Score=32.10 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHhC-CCCeEEEcCC
Q 008142 201 FLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKEL-DRPIVYSLSP 252 (576)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~-gr~i~lsls~ 252 (576)
++...++.-++.|-|+||..++.... ...-+.|+++++.+ ..|++++--+
T Consensus 189 ~ia~aaRiaaELGADIVKv~y~~~~~--~g~~e~f~~vv~~~g~vpVviaGG~ 239 (304)
T PRK06852 189 LIAGAAGVAACLGADFVKVNYPKKEG--ANPAELFKEAVLAAGRTKVVCAGGS 239 (304)
T ss_pred HHHHHHHHHHHHcCCEEEecCCCcCC--CCCHHHHHHHHHhCCCCcEEEeCCC
Confidence 45555566789999999999974211 01234566777888 4577776543
No 107
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=45.27 E-value=40 Score=36.15 Aligned_cols=61 Identities=16% Similarity=0.326 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEe-cccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHH
Q 008142 50 ISEEEFLQSAEIISQRLRPHGYEYVVV-DYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVH 128 (576)
Q Consensus 50 ise~~i~~~ad~~~~gl~~~Gy~yv~i-DdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih 128 (576)
.+++.+.+.++.| +++|+++|-| .-.|...++. -|.. .|. .|..+.+.++
T Consensus 7 ~~~e~~~~d~~~m----~~~G~n~vri~~~~W~~lEP~--------------eG~y-----dF~------~lD~~l~~a~ 57 (374)
T PF02449_consen 7 WPEEEWEEDLRLM----KEAGFNTVRIGEFSWSWLEPE--------------EGQY-----DFS------WLDRVLDLAA 57 (374)
T ss_dssp S-CCHHHHHHHHH----HHHT-SEEEE-CCEHHHH-SB--------------TTB--------H------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----HHcCCCEEEEEEechhhccCC--------------CCee-----ecH------HHHHHHHHHH
Confidence 4556777777654 6889999987 6678754321 1322 244 5999999999
Q ss_pred HcCCeEEEEee
Q 008142 129 AMGLKFGIHVM 139 (576)
Q Consensus 129 ~~Glk~Giy~~ 139 (576)
+.|+|+=|-+.
T Consensus 58 ~~Gi~viL~~~ 68 (374)
T PF02449_consen 58 KHGIKVILGTP 68 (374)
T ss_dssp CTT-EEEEEEC
T ss_pred hccCeEEEEec
Confidence 99999877654
No 108
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=44.85 E-value=86 Score=33.99 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.5
Q ss_pred hHHHHHHHHHcCCeEEEEeecCc
Q 008142 120 FTEVAKKVHAMGLKFGIHVMRGI 142 (576)
Q Consensus 120 lk~la~~ih~~Glk~Giy~~pg~ 142 (576)
++.+++.+++.||+||||....+
T Consensus 103 vgela~Avr~qGL~FGvy~s~a~ 125 (430)
T COG3669 103 VGELAKAVREQGLRFGVYLSGAW 125 (430)
T ss_pred HHHHHHHHHHcCCeeeEeeccCc
Confidence 68999999999999999998543
No 109
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=43.01 E-value=99 Score=32.68 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=48.3
Q ss_pred CcCCCHHHHHHHHHHH---HHhhccCCceEEEecccc--------cccccCCccccCCCccccCCCCCceeCCCCCCCCC
Q 008142 47 CWTISEEEFLQSAEII---SQRLRPHGYEYVVVDYLW--------YRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSR 115 (576)
Q Consensus 47 ~~~ise~~i~~~ad~~---~~gl~~~Gy~yv~iDdgW--------~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~ 115 (576)
-..+|+++|.+..+.+ ++..+.+||+-|.|=.+- ....++. .|+||--.-|..||+
T Consensus 136 p~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R----------~D~yGGslenR~rf~--- 202 (338)
T cd04733 136 PRAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKR----------TDEYGGSLENRARLL--- 202 (338)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCC----------CccCCCCHHHHHHHH---
Confidence 3469999999999866 357889999999886553 2221111 267764344556666
Q ss_pred CCCChHHHHHHHHHc-C--CeEEEEee
Q 008142 116 GGKGFTEVAKKVHAM-G--LKFGIHVM 139 (576)
Q Consensus 116 ~~~Glk~la~~ih~~-G--lk~Giy~~ 139 (576)
..+++.|++. | +.+++=..
T Consensus 203 -----~EiI~aIR~avG~d~~v~vris 224 (338)
T cd04733 203 -----LEIYDAIRAAVGPGFPVGIKLN 224 (338)
T ss_pred -----HHHHHHHHHHcCCCCeEEEEEc
Confidence 5677777753 3 55665443
No 110
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=42.62 E-value=80 Score=31.98 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=13.7
Q ss_pred ChHHHHHHHHHcCCeE
Q 008142 119 GFTEVAKKVHAMGLKF 134 (576)
Q Consensus 119 Glk~la~~ih~~Glk~ 134 (576)
..+.|.++++++|+.|
T Consensus 57 ~~~~L~~~~~~~gi~f 72 (241)
T PF03102_consen 57 QHKELFEYCKELGIDF 72 (241)
T ss_dssp HHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHHcCCEE
Confidence 5799999999999997
No 111
>PRK13840 sucrose phosphorylase; Provisional
Probab=42.58 E-value=28 Score=39.01 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=42.1
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCC-C--CC----CC-ChHH---HHHHHHHHHhCCC
Q 008142 188 FMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV-F--GD----DL-DINE---ISFVSEVLKELDR 244 (576)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~-~--~~----~~-~~~~---y~~m~~al~~~gr 244 (576)
..-||..+|++++++...++.+.+-|||.+++|.. + .. .. -++. .+.|++.++..+.
T Consensus 161 QpDLN~~NP~V~~~i~~il~fwl~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~ 228 (495)
T PRK13840 161 QIDIDVHSAAGWEYLMSILDRFAASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGM 228 (495)
T ss_pred cceeCCCCHHHHHHHHHHHHHHHHCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCC
Confidence 35689999999999999999999999999999965 2 11 11 1333 2567777776643
No 112
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=41.21 E-value=1.2e+02 Score=32.05 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=46.6
Q ss_pred cCCCHHHHHHHHHHH---HHhhccCCceEEEeccc--c------cccccCCccccCCCccccCCCCCceeCCCCCCCCCC
Q 008142 48 WTISEEEFLQSAEII---SQRLRPHGYEYVVVDYL--W------YRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRG 116 (576)
Q Consensus 48 ~~ise~~i~~~ad~~---~~gl~~~Gy~yv~iDdg--W------~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~ 116 (576)
..+|+++|.+..+.+ ++.++++||+-|.|-.+ + ....+. -.|+||--..+..||+
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~----------R~D~yGgsl~nr~rf~---- 207 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNK----------RTDEYGGSLENRMRFL---- 207 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCC----------CCcccCCCHHHHhHHH----
Confidence 569999999999866 35678899999988753 2 111100 1356765444444554
Q ss_pred CCChHHHHHHHHHc---CCeEEEEe
Q 008142 117 GKGFTEVAKKVHAM---GLKFGIHV 138 (576)
Q Consensus 117 ~~Glk~la~~ih~~---Glk~Giy~ 138 (576)
..+++.|++. ++.++|=+
T Consensus 208 ----~eiv~aIR~~vG~d~~v~vri 228 (336)
T cd02932 208 ----LEVVDAVRAVWPEDKPLFVRI 228 (336)
T ss_pred ----HHHHHHHHHHcCCCceEEEEE
Confidence 6777888764 45555543
No 113
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=41.17 E-value=59 Score=30.89 Aligned_cols=74 Identities=9% Similarity=0.152 Sum_probs=41.8
Q ss_pred CcCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHH
Q 008142 47 CWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKK 126 (576)
Q Consensus 47 ~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ 126 (576)
..+.+++++.+..+.| ++.|.++|+|= |..... .. -+..-.. +.+|.-. ...=+..+.+.
T Consensus 14 ~~~~~~~~W~~~~~~m----~~~GidtlIlq--~~~~~~-~~-----------~yps~~~-~~~~~~~-~~d~l~~~L~~ 73 (166)
T PF14488_consen 14 HQNWTPAQWREEFRAM----KAIGIDTLILQ--WTGYGG-FA-----------FYPSKLS-PGGFYMP-PVDLLEMILDA 73 (166)
T ss_pred hcCCCHHHHHHHHHHH----HHcCCcEEEEE--EeecCC-cc-----------cCCcccc-CccccCC-cccHHHHHHHH
Confidence 4578899998887764 68888887662 433211 00 0010000 1122210 00136788888
Q ss_pred HHHcCCeE--EEEeec
Q 008142 127 VHAMGLKF--GIHVMR 140 (576)
Q Consensus 127 ih~~Glk~--Giy~~p 140 (576)
..+.|||+ |||..+
T Consensus 74 A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 74 ADKYGMKVFVGLYFDP 89 (166)
T ss_pred HHHcCCEEEEeCCCCc
Confidence 88899986 777665
No 114
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=41.02 E-value=3.4e+02 Score=26.15 Aligned_cols=20 Identities=15% Similarity=-0.100 Sum_probs=17.5
Q ss_pred ChHHHHHHHHHcCCeEEEEe
Q 008142 119 GFTEVAKKVHAMGLKFGIHV 138 (576)
Q Consensus 119 Glk~la~~ih~~Glk~Giy~ 138 (576)
-+..-++.+++.||++|+|.
T Consensus 39 ~~~~n~~~A~~aGl~vG~Yh 58 (196)
T cd06415 39 KASAQVSSAIANGKMTGGYH 58 (196)
T ss_pred cHHHHHHHHHHCCCeeEEEE
Confidence 37778889999999999996
No 115
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=39.92 E-value=4.8e+02 Score=27.63 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=44.3
Q ss_pred cCCCHHHHHHHHHHH---HHhhccCCceEEEecccc--cccccCCccccCCCcc-ccCCCCCceeCCCCCCCCCCCCChH
Q 008142 48 WTISEEEFLQSAEII---SQRLRPHGYEYVVVDYLW--YRRKVKGAYVDSLGFD-VIDEWGRMIPDPDRWPSSRGGKGFT 121 (576)
Q Consensus 48 ~~ise~~i~~~ad~~---~~gl~~~Gy~yv~iDdgW--~~~~~~g~~~~~~~~~-~~d~~G~~~~d~~kFP~~~~~~Glk 121 (576)
..+|+++|.+..+.+ +..++++||+-|.|-.+- --.. .. |.-.. -.|+||--..+..||+ .
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~q----Fl-Sp~~N~R~D~yGGslenR~rf~--------~ 206 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQ----FL-RDGSNKRTDEYGGSIENRARFL--------L 206 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHH----hc-CCccCCCCCcCCCcHHHhhhHH--------H
Confidence 468999999999866 356888999999996544 1100 00 00000 1367765455556776 6
Q ss_pred HHHHHHHHc
Q 008142 122 EVAKKVHAM 130 (576)
Q Consensus 122 ~la~~ih~~ 130 (576)
.+++.|++.
T Consensus 207 eii~air~~ 215 (338)
T cd02933 207 EVVDAVAEA 215 (338)
T ss_pred HHHHHHHHH
Confidence 788888874
No 116
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=39.45 E-value=92 Score=34.12 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=43.7
Q ss_pred CceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCCC----------CCChHHHH----HHHHHHHhC----CCCeEE
Q 008142 187 GFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGD----------DLDINEIS----FVSEVLKEL----DRPIVY 248 (576)
Q Consensus 187 ~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~----------~~~~~~y~----~m~~al~~~----gr~i~l 248 (576)
+|+.+=.++-.-+.|.++.++.++.|+||.|-+|+=|+. ..+.+.|. .+|+.|++. ||...|
T Consensus 141 ~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~L 220 (441)
T COG3325 141 GFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKDKANYVLLLQELRKKLDKAGVEDGRHYQL 220 (441)
T ss_pred CcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhhcccccCceEEE
Confidence 454444444455568899999999999999999997641 12345664 456666654 566777
Q ss_pred EcC
Q 008142 249 SLS 251 (576)
Q Consensus 249 sls 251 (576)
++-
T Consensus 221 TiA 223 (441)
T COG3325 221 TIA 223 (441)
T ss_pred EEe
Confidence 764
No 117
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=39.43 E-value=1.5e+02 Score=30.41 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=32.9
Q ss_pred HHHHHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCCeEEEcCC
Q 008142 203 RSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSP 252 (576)
Q Consensus 203 ~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~i~lsls~ 252 (576)
..-.+.=++.|.|+||.++... .+.|+++++.++-|++++--+
T Consensus 169 ~~aaRlaaelGADIiK~~ytg~-------~e~F~~vv~~~~vpVviaGG~ 211 (265)
T COG1830 169 GYAARLAAELGADIIKTKYTGD-------PESFRRVVAACGVPVVIAGGP 211 (265)
T ss_pred HHHHHHHHHhcCCeEeecCCCC-------hHHHHHHHHhCCCCEEEeCCC
Confidence 3334556799999999998532 267789999999999988654
No 118
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=39.06 E-value=2.3e+02 Score=28.38 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhCccEEEecCCCCCCCChHHHH----HHHHHHHhCCCCeEEEcC
Q 008142 199 RAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEIS----FVSEVLKELDRPIVYSLS 251 (576)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~----~m~~al~~~gr~i~lsls 251 (576)
+.+++++++.+++.|+|.|=+|+-+.... .+.|. .+++++++.+. +++++
T Consensus 85 ~~fi~~lv~~~~~~~~DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~~~~--~lt~a 138 (253)
T cd06545 85 KALVDKIINYVVSYNLDGIDVDLEGPDVT-FGDYLVFIRALYAALKKEGK--LLTAA 138 (253)
T ss_pred HHHHHHHHHHHHHhCCCceeEEeeccCcc-HhHHHHHHHHHHHHHhhcCc--EEEEE
Confidence 45789999999999999999998654221 34453 45555655443 44443
No 119
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=38.99 E-value=31 Score=33.46 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHcCCeEEEEeecC
Q 008142 119 GFTEVAKKVHAMGLKFGIHVMRG 141 (576)
Q Consensus 119 Glk~la~~ih~~Glk~Giy~~pg 141 (576)
-++.+.++|++.|.+++||+.+-
T Consensus 109 ~~~~f~~~v~~~G~~~~iYt~~~ 131 (196)
T cd06415 109 AILAFMDTIKDAGYKPMLYSYKP 131 (196)
T ss_pred HHHHHHHHHHHhCCCcEEEecHH
Confidence 47889999999999999998763
No 120
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=38.84 E-value=1e+02 Score=32.84 Aligned_cols=30 Identities=33% Similarity=0.358 Sum_probs=25.0
Q ss_pred cCCCHHHHHHHHHHH---HHhhccCCceEEEec
Q 008142 48 WTISEEEFLQSAEII---SQRLRPHGYEYVVVD 77 (576)
Q Consensus 48 ~~ise~~i~~~ad~~---~~gl~~~Gy~yv~iD 77 (576)
..+|+++|.+..+.+ +..++++||+.|.|=
T Consensus 125 ~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih 157 (353)
T cd02930 125 RELSEEEIEQTIEDFARCAALAREAGYDGVEIM 157 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 469999999999866 356788999999994
No 121
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=38.60 E-value=59 Score=29.08 Aligned_cols=51 Identities=22% Similarity=0.429 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHc
Q 008142 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAM 130 (576)
Q Consensus 51 se~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~~ 130 (576)
|-+....+...+++.+++.|.+-|++|=+ | .+|-. -++.|++.+++.
T Consensus 64 n~~aA~~vG~~la~ra~~~gi~~vvfDrg----------------------g------~~YhG-----rv~A~a~~aRe~ 110 (114)
T TIGR00060 64 NKDAAKKVGKLVAERLKEKGIKDVVFDRG----------------------G------YKYHG-----RVAALAEAAREA 110 (114)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCC----------------------C------CcchH-----HHHHHHHHHHHh
Confidence 44556666677888899999999999822 1 23332 599999999999
Q ss_pred CCeE
Q 008142 131 GLKF 134 (576)
Q Consensus 131 Glk~ 134 (576)
||+|
T Consensus 111 Gl~F 114 (114)
T TIGR00060 111 GLNF 114 (114)
T ss_pred CCCC
Confidence 9987
No 122
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=36.32 E-value=1e+02 Score=32.92 Aligned_cols=57 Identities=9% Similarity=-0.026 Sum_probs=38.8
Q ss_pred cHHHHH-HHHHHHHHHHhhCccEEEecCCCCCC---CChHHHH----HHHHHHHhCCCCeEEEcC
Q 008142 195 LGAGRA-FLRSLYQQYAEWGVDFVKHDCVFGDD---LDINEIS----FVSEVLKELDRPIVYSLS 251 (576)
Q Consensus 195 ~p~~~~-~~~~~~~~~a~wGvdylK~D~~~~~~---~~~~~y~----~m~~al~~~gr~i~lsls 251 (576)
+|..++ |++++++.+++.|||.|=+||-+... .+.+.|. .+++++++.++...+++.
T Consensus 93 ~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 93 NPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 455454 88999999999999999999976532 2344553 456666665555555553
No 123
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=36.27 E-value=97 Score=32.91 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHcCCeE
Q 008142 118 KGFTEVAKKVHAMGLKF 134 (576)
Q Consensus 118 ~Glk~la~~ih~~Glk~ 134 (576)
.+++.|.+++++.|+.|
T Consensus 76 e~~~~L~~~~~~~Gi~~ 92 (329)
T TIGR03569 76 EDHRELKEYCESKGIEF 92 (329)
T ss_pred HHHHHHHHHHHHhCCcE
Confidence 47999999999999986
No 124
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=36.17 E-value=80 Score=32.77 Aligned_cols=50 Identities=16% Similarity=0.096 Sum_probs=34.0
Q ss_pred cHHHH-HHHHHHHHHHHhhCccEEEecCCCCCCCChHHHH----HHHHHHHhCCC
Q 008142 195 LGAGR-AFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEIS----FVSEVLKELDR 244 (576)
Q Consensus 195 ~p~~~-~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~----~m~~al~~~gr 244 (576)
+|..+ .|++++++.+.++|+|.|-+|+-+....+.+.|. .++.++.+.+.
T Consensus 84 ~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 84 NPEARQRLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLHPAGY 138 (313)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhhhcCc
Confidence 35544 4889999999999999999998664333444554 45555555454
No 125
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=35.91 E-value=40 Score=37.54 Aligned_cols=35 Identities=17% Similarity=0.384 Sum_probs=31.8
Q ss_pred ceeecCCcHHHHHHHHHHHHHHHhhCccEEEecCC
Q 008142 188 FMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (576)
Q Consensus 188 ~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~ 222 (576)
..-||..+|.+++++...++.+.+-|||.+++|.+
T Consensus 157 QpDLN~~np~v~e~i~~il~fwl~~GvdgfRLDAv 191 (470)
T TIGR03852 157 QIDLDVTSETTKRFIRDNLENLAEHGASIIRLDAF 191 (470)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 35688999999999999999999999999999975
No 126
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=35.19 E-value=4.8e+02 Score=26.39 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHH-hCCCCeEEEcCC
Q 008142 198 GRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLK-ELDRPIVYSLSP 252 (576)
Q Consensus 198 ~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~-~~gr~i~lsls~ 252 (576)
.+.|++.+.+.+.++|||.|=+|+-++. +.+.|..+-+.|+ +.++..++++.|
T Consensus 97 r~~f~~s~~~~~~~~~~DGiDiDwE~p~--~~~~~~~ll~~Lr~~~~~~~~lT~Ap 150 (256)
T cd06546 97 FERYYGQLRDMIRRRGLDGLDLDVEEPM--SLDGIIRLIDRLRSDFGPDFIITLAP 150 (256)
T ss_pred HHHHHHHHHHHHHHhCCCceEEeeecCC--CHhHHHHHHHHHHHHhCCCcEEEECC
Confidence 4567888888889999999999986642 2345665555554 456667777755
No 127
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=33.84 E-value=80 Score=27.96 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHH
Q 008142 49 TISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVH 128 (576)
Q Consensus 49 ~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih 128 (576)
.-+-+....+...+++.+++.|.+-|+.|-+ | .+|-+ -++.+++-++
T Consensus 57 ~~n~~aA~~vG~lla~ra~~~gi~~vvfDrg----------------------g------~~yhG-----rV~a~a~~ar 103 (109)
T CHL00139 57 TSTCDASKLVGQKLAKKSLKKGITKVVFDRG----------------------G------KLYHG-----RIKALAEAAR 103 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEcCC----------------------C------Cccch-----HHHHHHHHHH
Confidence 3455666677778889999999999999921 1 12332 5899999999
Q ss_pred HcCCeE
Q 008142 129 AMGLKF 134 (576)
Q Consensus 129 ~~Glk~ 134 (576)
+.||+|
T Consensus 104 e~GL~f 109 (109)
T CHL00139 104 EAGLQF 109 (109)
T ss_pred HhCCCC
Confidence 999986
No 128
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=33.75 E-value=1.3e+02 Score=31.47 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHhhCccEEEecCCCCCCC-----ChHHHHHHHHHH-HhCCCCeEEEcCC
Q 008142 197 AGRAFLRSLYQQYAEWGVDFVKHDCVFGDDL-----DINEISFVSEVL-KELDRPIVYSLSP 252 (576)
Q Consensus 197 ~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~-----~~~~y~~m~~al-~~~gr~i~lsls~ 252 (576)
..+.|++.+++.++++|||-|=+|+-++... +.+.+..+-+.| ++.++.++|++.|
T Consensus 94 ~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~~~~lT~AP 155 (312)
T cd02871 94 QEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGPNFILTMAP 155 (312)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 4567889999999999999999998664221 223443333333 3556678888876
No 129
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=33.44 E-value=1.6e+02 Score=30.54 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=34.6
Q ss_pred hhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCeEEEEee
Q 008142 65 RLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVM 139 (576)
Q Consensus 65 gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~~Glk~Giy~~ 139 (576)
.+.++|.+.|.++|-|....- +.. + ....--.|. ++.+++.+|+.|.+..+|..
T Consensus 176 ~~~~~G~d~i~i~d~~~~~~~------------isp--~-~f~e~~~p~------~k~i~~~i~~~g~~~~lH~c 229 (330)
T cd03465 176 ALIEAGADGIYISDPWASSSI------------LSP--E-DFKEFSLPY------LKKVFDAIKALGGPVIHHNC 229 (330)
T ss_pred HHHHhCCCEEEEeCCccccCC------------CCH--H-HHHHHhhHH------HHHHHHHHHHcCCceEEEEC
Confidence 456679999999998754210 000 0 000011353 89999999999999888864
No 130
>PRK06769 hypothetical protein; Validated
Probab=33.30 E-value=79 Score=29.89 Aligned_cols=21 Identities=14% Similarity=-0.091 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHcCCeEEEEee
Q 008142 119 GFTEVAKKVHAMGLKFGIHVM 139 (576)
Q Consensus 119 Glk~la~~ih~~Glk~Giy~~ 139 (576)
|++++.++||++|++++|=++
T Consensus 32 gv~e~L~~Lk~~G~~l~I~Tn 52 (173)
T PRK06769 32 FTKASLQKLKANHIKIFSFTN 52 (173)
T ss_pred CHHHHHHHHHHCCCEEEEEEC
Confidence 799999999999999999864
No 131
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=33.25 E-value=88 Score=31.35 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=18.5
Q ss_pred hHHHHHHHHHcCCeEEEEeec
Q 008142 120 FTEVAKKVHAMGLKFGIHVMR 140 (576)
Q Consensus 120 lk~la~~ih~~Glk~Giy~~p 140 (576)
|+.+++.+|++|+++-+|..|
T Consensus 187 l~~~v~~a~~~Gl~vr~Wtv~ 207 (228)
T cd08577 187 LKSIIDKAHARGKKVRFWGTP 207 (228)
T ss_pred HHHHHHHHHHCCCEEEEEccC
Confidence 788899999999999999755
No 132
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=32.93 E-value=1e+02 Score=31.92 Aligned_cols=55 Identities=11% Similarity=0.018 Sum_probs=36.5
Q ss_pred cHHHH-HHHHHHHHHHHhhCccEEEecCCCCCCCChHHHH----HHHHHHHhCCCCeEEE
Q 008142 195 LGAGR-AFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEIS----FVSEVLKELDRPIVYS 249 (576)
Q Consensus 195 ~p~~~-~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~----~m~~al~~~gr~i~ls 249 (576)
+|..+ .+++++++.+++.|||.|-+||-+....+.+.|. .++.+|.+.|..+.++
T Consensus 85 ~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~~~~~lsv~ 144 (298)
T cd06549 85 DPSARAKFIANIAAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPAQGKQLTVT 144 (298)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhhcCcEEEEE
Confidence 35544 4789999999999999999999654333445554 4555555555433333
No 133
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=32.37 E-value=1.3e+02 Score=35.20 Aligned_cols=32 Identities=28% Similarity=0.190 Sum_probs=26.3
Q ss_pred ecCCcHHHHHHHHHHHHH-HHhhCccEEEecCC
Q 008142 191 VNTKLGAGRAFLRSLYQQ-YAEWGVDFVKHDCV 222 (576)
Q Consensus 191 lD~t~p~~~~~~~~~~~~-~a~wGvdylK~D~~ 222 (576)
++-.||.|++++-.-++. +.++.||.+..|..
T Consensus 372 fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ 404 (757)
T KOG0470|consen 372 FNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLV 404 (757)
T ss_pred ccCCCHHHHHHHHHHHHHHHHheeccceEEcch
Confidence 566899999998666665 56899999999974
No 134
>PRK08227 autoinducer 2 aldolase; Validated
Probab=32.23 E-value=2.8e+02 Score=28.57 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCCeEEEcCC
Q 008142 201 FLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSP 252 (576)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~i~lsls~ 252 (576)
++..-++.-++.|-|+||..++ . +.|+++++++..|++++-.+
T Consensus 159 ~ia~aaRiaaELGADiVK~~y~-------~--~~f~~vv~a~~vPVviaGG~ 201 (264)
T PRK08227 159 YFSLATRIAAEMGAQIIKTYYV-------E--EGFERITAGCPVPIVIAGGK 201 (264)
T ss_pred HHHHHHHHHHHHcCCEEecCCC-------H--HHHHHHHHcCCCcEEEeCCC
Confidence 5566667778999999999985 1 57888888888899977654
No 135
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=32.16 E-value=93 Score=32.73 Aligned_cols=50 Identities=24% Similarity=0.322 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhCccEEEecC-CCCCCCCh--HHH----HHHHHHHHhCCCCeEEEcC
Q 008142 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (576)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~y----~~m~~al~~~gr~i~lsls 251 (576)
+..++..++.=|+||||=|- +....+.+ +++ +++.++-+++|++.+|...
T Consensus 32 ~a~~~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~eTG~~~ly~~N 88 (309)
T PF00016_consen 32 LAELAYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVDRAEEETGEKKLYAAN 88 (309)
T ss_dssp HHHHHHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHHHHHHSS--EEEEE
T ss_pred hhhHHHhhhhcccceecccccccCcccccHhHhHHhhhhhhhccccccceecceecc
Confidence 44556667788999999995 44444544 454 4566677789987666543
No 136
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=30.85 E-value=24 Score=33.60 Aligned_cols=24 Identities=17% Similarity=0.016 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHcC-CeEEEEeecCc
Q 008142 119 GFTEVAKKVHAMG-LKFGIHVMRGI 142 (576)
Q Consensus 119 Glk~la~~ih~~G-lk~Giy~~pg~ 142 (576)
-++.+++.++++| .++|||..+..
T Consensus 105 ~~~~f~~~~~~~gg~~~~iY~~~~~ 129 (186)
T cd00599 105 WLNAFLNEVEALTGKKPIIYTSPSF 129 (186)
T ss_pred HHHHHHHHHHHHHCCceEEEEcHHH
Confidence 5899999999998 99999998753
No 137
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=30.72 E-value=96 Score=33.99 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhCccEEEecC-CCCCCCCh--HHH----HHHHHHHHhCCCCeEEEcC
Q 008142 201 FLRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (576)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~y----~~m~~al~~~gr~i~lsls 251 (576)
-+..++..++.=|+||||=|- +....+.+ +++ ++++++-+++|+..+|+.+
T Consensus 161 ~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~N 218 (412)
T TIGR03326 161 EHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLAN 218 (412)
T ss_pred HHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEEE
Confidence 344556778889999999995 44444543 444 4566666889998776554
No 138
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=28.75 E-value=62 Score=30.69 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=41.5
Q ss_pred ccCcCCCHHHHHHHHHHHHHhhc-c-CCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHH
Q 008142 45 SFCWTISEEEFLQSAEIISQRLR-P-HGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTE 122 (576)
Q Consensus 45 ~~~~~ise~~i~~~ad~~~~gl~-~-~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~ 122 (576)
.|....+.++..++|+++.+.++ . .+.-.+.||--+..... .. ..... .-++.
T Consensus 56 hf~~~~~~~~a~~qA~~f~~~~~~~~~~~~~~~lD~E~~~~~~----------------~~----~~~~~-----~~~~~ 110 (181)
T PF01183_consen 56 HFARATNSSDAEAQADYFLNQVKGGDPGDLPPALDVEDDKSNN----------------PS----KSDNT-----AWVKA 110 (181)
T ss_dssp EE--TTTHCHHHHHHHHHHHCTHTSSTSCS-EEEEE-S-GGCC----------------SS----HHHHH-----HHHHH
T ss_pred EEeccCCcccHHHHHHHHHHHhcccCCCcceEEEeccccccCC----------------CC----HHHHH-----HHHHH
Confidence 34444578889999998876663 2 22334677754431100 00 00001 14789
Q ss_pred HHHHHHH-cCCeEEEEeecC
Q 008142 123 VAKKVHA-MGLKFGIHVMRG 141 (576)
Q Consensus 123 la~~ih~-~Glk~Giy~~pg 141 (576)
+.+.|++ .|.+++||..+-
T Consensus 111 f~~~~~~~~G~~~~iY~~~~ 130 (181)
T PF01183_consen 111 FLDEVEKAAGYKPGIYTSKS 130 (181)
T ss_dssp HHHHHHHHCTSEEEEEEEHH
T ss_pred HHHHHHHHhCCceeEeecHH
Confidence 9999955 999999998873
No 139
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=27.97 E-value=1e+02 Score=33.67 Aligned_cols=50 Identities=20% Similarity=0.404 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhCccEEEecC-CCCCCCCh--HHH----HHHHHHHHhCCCCeEEEcC
Q 008142 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (576)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~y----~~m~~al~~~gr~i~lsls 251 (576)
+..++..++.=|+||||=|- +....+.+ +++ +++.++-+++|+..+|+.+
T Consensus 161 ~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~N 217 (406)
T cd08207 161 TAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFN 217 (406)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEe
Confidence 34456667788999999995 44444443 343 4677777889998777654
No 140
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=27.84 E-value=1e+02 Score=33.69 Aligned_cols=52 Identities=29% Similarity=0.448 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhCccEEEecC-CCCCCCCh--HHH----HHHHHHHHhCCCCeEEEcCC
Q 008142 201 FLRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLSP 252 (576)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~y----~~m~~al~~~gr~i~lsls~ 252 (576)
-+..++..++.=|+||||=|- +....+.+ +++ +++.++-+++|+..+|..+.
T Consensus 156 ~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~Ni 214 (407)
T TIGR03332 156 YLKEQLRQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVYEQTGHKTLYAVNL 214 (407)
T ss_pred HHHHHHHHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcceEeecC
Confidence 344456677888999999995 44444443 454 45666777899987776653
No 141
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=27.76 E-value=1.1e+02 Score=31.41 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.1
Q ss_pred HHHHHhhCccEEEecCC
Q 008142 206 YQQYAEWGVDFVKHDCV 222 (576)
Q Consensus 206 ~~~~a~wGvdylK~D~~ 222 (576)
++.+.++|||.|--|.+
T Consensus 274 ~~~l~~~GVdgIiTD~~ 290 (290)
T cd08607 274 RKKLKELGVDGLIYDRI 290 (290)
T ss_pred HHHHHHcCCCEEEecCC
Confidence 56788999999998863
No 142
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=27.76 E-value=1e+02 Score=33.26 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhCccEEEecC-CCCCCCCh--HHH----HHHHHHHHhCCCCeEEEcCC
Q 008142 201 FLRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLSP 252 (576)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~y----~~m~~al~~~gr~i~lsls~ 252 (576)
-+..++..++.=|+||||=|- +....+.+ +++ +++.++-+++|+..+|+.+.
T Consensus 144 ~~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni 202 (366)
T cd08148 144 YTAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEETGEKKLYAVNV 202 (366)
T ss_pred HHHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEEc
Confidence 344556778888999999995 44444543 444 45667777899987776543
No 143
>smart00642 Aamy Alpha-amylase domain.
Probab=27.46 E-value=1.5e+02 Score=28.08 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=15.8
Q ss_pred ChHHHHHHHHHcCCeEEE
Q 008142 119 GFTEVAKKVHAMGLKFGI 136 (576)
Q Consensus 119 Glk~la~~ih~~Glk~Gi 136 (576)
.|+.|++.+|++|+|+=+
T Consensus 71 d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 71 DFKELVDAAHARGIKVIL 88 (166)
T ss_pred HHHHHHHHHHHCCCEEEE
Confidence 699999999999999633
No 144
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=27.40 E-value=1.4e+02 Score=31.32 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhCccEEEecCCCCCC----------CChHHH----HHHHHHHHhC----CCCeEEEcCC
Q 008142 199 RAFLRSLYQQYAEWGVDFVKHDCVFGDD----------LDINEI----SFVSEVLKEL----DRPIVYSLSP 252 (576)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~~~----------~~~~~y----~~m~~al~~~----gr~i~lsls~ 252 (576)
+.|++++++.+.+.|||.|=+|+-++.. .+.+.| +.++.++.+. +++.+|++..
T Consensus 111 ~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~~~Ls~av 182 (322)
T cd06548 111 AKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLLKELREALDALGAETGRKYLLTIAA 182 (322)
T ss_pred HHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhccCCceEEEEEc
Confidence 4588999999999999999999976422 223344 3566666554 4567777753
No 145
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=27.04 E-value=6.3e+02 Score=25.04 Aligned_cols=98 Identities=17% Similarity=0.295 Sum_probs=0.0
Q ss_pred HhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHc--CCeEEEEeecC
Q 008142 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAM--GLKFGIHVMRG 141 (576)
Q Consensus 64 ~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~~--Glk~Giy~~pg 141 (576)
+.|.+.|.+++.+| .+| |..+|| -.|. ..+.+.+++. .+.+=++++-
T Consensus 19 ~~l~~~g~~~lH~D-------------------vmD--G~Fvpn-~tfg--------~~~i~~i~~~~~~~~~dvHLMv- 67 (220)
T PRK08883 19 EKVLAAGADVVHFD-------------------VMD--NHYVPN-LTFG--------APICKALRDYGITAPIDVHLMV- 67 (220)
T ss_pred HHHHHcCCCEEEEe-------------------ccc--CcccCc-cccC--------HHHHHHHHHhCCCCCEEEEecc-
Q ss_pred ccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHHHHHHHhhCccEEEecC
Q 008142 142 ISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDC 221 (576)
Q Consensus 142 ~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~ 221 (576)
++|. .+++.|++-|.|+|-+=.
T Consensus 68 ----------------------------------------------------~~p~------~~i~~~~~~gad~i~~H~ 89 (220)
T PRK08883 68 ----------------------------------------------------KPVD------RIIPDFAKAGASMITFHV 89 (220)
T ss_pred ----------------------------------------------------CCHH------HHHHHHHHhCCCEEEEcc
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCCeEEEcCCCCC
Q 008142 222 VFGDDLDINEISFVSEVLKELDRPIVYSLSPGTG 255 (576)
Q Consensus 222 ~~~~~~~~~~y~~m~~al~~~gr~i~lsls~~~~ 255 (576)
.......++-+.+++.|-..-+.++|..+
T Consensus 90 -----Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp 118 (220)
T PRK08883 90 -----EASEHVDRTLQLIKEHGCQAGVVLNPATP 118 (220)
T ss_pred -----cCcccHHHHHHHHHHcCCcEEEEeCCCCC
No 146
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=26.88 E-value=1.1e+02 Score=33.41 Aligned_cols=51 Identities=27% Similarity=0.417 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhCccEEEecC-CCCCCCCh--HHHH----HHHHHHHhCCCCeEEEcC
Q 008142 201 FLRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEIS----FVSEVLKELDRPIVYSLS 251 (576)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~y~----~m~~al~~~gr~i~lsls 251 (576)
-+..++..++.=|+||||=|- +....+.+ +++. ++.++-+++|+..+|..+
T Consensus 141 ~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~N 198 (391)
T cd08209 141 DLAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVN 198 (391)
T ss_pred HHHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEE
Confidence 344556677888999999995 44445544 4554 566666789998776554
No 147
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=26.55 E-value=1.2e+02 Score=29.92 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHc
Q 008142 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAM 130 (576)
Q Consensus 51 se~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~~ 130 (576)
+-+....+...+++.++..|..-|+.|= . |. +|-+ -+++|||.+++.
T Consensus 161 nieaA~~VGk~IAerAl~kGI~kVvFDR-------g---------------Gy------~YHG-----RVkALAdaARe~ 207 (211)
T PTZ00032 161 TIKAAYELGKLIGRKALSKGISKVRFDR-------A---------------HY------KYAG-----KVEALAEGARAV 207 (211)
T ss_pred cHHHHHHHHHHHHHHHHHCCCCEEEEeC-------C---------------CC------eehh-----HHHHHHHHHHHc
Confidence 4455666677788899999999999991 1 21 2222 489999999999
Q ss_pred CCeE
Q 008142 131 GLKF 134 (576)
Q Consensus 131 Glk~ 134 (576)
||+|
T Consensus 208 GLkF 211 (211)
T PTZ00032 208 GLQF 211 (211)
T ss_pred CCCC
Confidence 9986
No 148
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=26.41 E-value=1.4e+02 Score=32.14 Aligned_cols=38 Identities=26% Similarity=0.277 Sum_probs=24.7
Q ss_pred HHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCCeEEEcCC
Q 008142 207 QQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSP 252 (576)
Q Consensus 207 ~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~i~lsls~ 252 (576)
+.|+++|++.|++|+-+ +.+....|++- |-+|.|+.|.
T Consensus 83 ~~~~~lGi~~lRlD~Gf----~~~~ia~ls~n----g~~I~LNASt 120 (357)
T PF05913_consen 83 SFFKELGIDGLRLDYGF----SGEEIAKLSKN----GIKIELNAST 120 (357)
T ss_dssp HHHHHHT-SEEEESSS-----SCHHHHHHTTT-----SEEEEETTT
T ss_pred HHHHHcCCCEEEECCCC----CHHHHHHHHhC----CCEEEEECCC
Confidence 56899999999999743 34555555432 6667777774
No 149
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=26.35 E-value=1.4e+02 Score=30.55 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=34.0
Q ss_pred HhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCC---C--CCCCCCCCChHHHHHHHHHcCCeEEEEe
Q 008142 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPD---R--WPSSRGGKGFTEVAKKVHAMGLKFGIHV 138 (576)
Q Consensus 64 ~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~---k--FP~~~~~~Glk~la~~ih~~Glk~Giy~ 138 (576)
+.+.++|.++|+|||-|.... . ...+++ + .|. ++.+++.+|..|.+.++|.
T Consensus 151 ~~~~eaG~d~i~i~dp~~~~~-----------------~-~~is~~~~~e~~~p~------~k~i~~~i~~~~~~~~lH~ 206 (306)
T cd00465 151 KTLIEAGAKALQIHEPAFSQI-----------------N-SFLGPKMFKKFALPA------YKKVAEYKAAGEVPIVHHS 206 (306)
T ss_pred HHHHHhCCCEEEEeccccccc-----------------C-CCCCHHHHHHHHHHH------HHHHHHHHhhcCCceEEEE
Confidence 356778999999999886531 0 001111 2 243 7889999998888888775
No 150
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=25.77 E-value=1.3e+02 Score=33.44 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=15.0
Q ss_pred ChHHHHHHHHHcCCeE
Q 008142 119 GFTEVAKKVHAMGLKF 134 (576)
Q Consensus 119 Glk~la~~ih~~Glk~ 134 (576)
.||.|++.+|++|||+
T Consensus 82 dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 82 ELLNAIDALHENGIKV 97 (479)
T ss_pred HHHHHHHHHHHCCCEE
Confidence 5999999999999995
No 151
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=25.29 E-value=1.2e+02 Score=28.85 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=41.9
Q ss_pred cCcCCCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHH
Q 008142 46 FCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAK 125 (576)
Q Consensus 46 ~~~~ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~ 125 (576)
|....+.++..+.|+.+-+.++. .-.++.+|- +... .. ... ..++.|.+
T Consensus 60 f~~~~~~~~a~~eA~~f~~~~~~-~~~~~~lD~--E~~~----------------~~-------~~~-----~~~~~f~~ 108 (177)
T cd06523 60 FARGTSTADAKAEARDFYNRANK-KPTFYVLDV--EVTS----------------MS-------DMN-----AGVQAFIS 108 (177)
T ss_pred EeccCCHHHHHHHHHHHHHHhcC-CCceEEEee--ccCC----------------cc-------hHH-----HHHHHHHH
Confidence 44556777888889877555655 335677882 2110 01 111 15899999
Q ss_pred HHHHcCC-eEEEEeecC
Q 008142 126 KVHAMGL-KFGIHVMRG 141 (576)
Q Consensus 126 ~ih~~Gl-k~Giy~~pg 141 (576)
.+++.|. ++|||+...
T Consensus 109 ~v~~~g~~~~~lYt~~~ 125 (177)
T cd06523 109 ELRRLGAKKVGLYIGHH 125 (177)
T ss_pred HHHHccCCcEEEEchHH
Confidence 9999987 679998763
No 152
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=24.78 E-value=1.6e+02 Score=31.75 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhCccEEEecCC-CCCCCCh--HHHHH----HHHHHHhCCCCeEEEcC
Q 008142 201 FLRSLYQQYAEWGVDFVKHDCV-FGDDLDI--NEISF----VSEVLKELDRPIVYSLS 251 (576)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~~-~~~~~~~--~~y~~----m~~al~~~gr~i~lsls 251 (576)
-+..++..++.=|+|+||-|-. ....+.+ ++..+ +.++-+++|+...|..+
T Consensus 142 ~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~N 199 (364)
T cd08210 142 ELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPN 199 (364)
T ss_pred HHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEe
Confidence 3455667788899999999964 3333433 45544 45555667776555443
No 153
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=24.73 E-value=8.2e+02 Score=28.73 Aligned_cols=133 Identities=15% Similarity=0.127 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCC----CCCCCChHHHHHH
Q 008142 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPS----SRGGKGFTEVAKK 126 (576)
Q Consensus 51 se~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~----~~~~~Glk~la~~ 126 (576)
+.++-.++++.+-+.+++.|.+.|.+=-+ . |+.|+=..+..-||. ++. .++..++=.
T Consensus 328 dp~qq~~~L~~lLdrlk~~G~ntV~lqaf-a-----------------dp~gd~~~~s~yfP~~~lp~r~-d~f~~~aw~ 388 (671)
T PRK14582 328 NPQQQDRNIDVLIQRVKDMQISTVYLQAF-A-----------------DPDGDGLVKELYFPNRLLPMRA-DLFNRVAWQ 388 (671)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEEec-c-----------------CCCCCccccccccCcccccccc-CCcCHHHHH
Confidence 45555666666667788888876655211 0 112222222234442 111 256666666
Q ss_pred HH-HcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccccccccccCCCCceeecCCcHHHHHHHHHH
Q 008142 127 VH-AMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSL 205 (576)
Q Consensus 127 ih-~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~~~~~~~~~~~~~~~lD~t~p~~~~~~~~~ 205 (576)
|+ ..|+|+=-|..|-... ..++.+-. ........+..-.++.+..|||-+|+++++|..+
T Consensus 389 l~~r~~v~v~AWmp~~~~~--~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~rl~P~~pe~r~~i~~i 449 (671)
T PRK14582 389 LRTRAGVNVYAWMPVLSFD--LDPTLPRV-----------------KRLDTGEGKAQIHPEQYRRLSPFDDRVRAQVGML 449 (671)
T ss_pred HHHhhCCEEEEeccceeec--cCCCcchh-----------------hhccccCCccccCCCCCcCCCCCCHHHHHHHHHH
Confidence 65 5599987776653211 11111100 0000000000111233456999999999999999
Q ss_pred HHHHHh-hCccEEEecC
Q 008142 206 YQQYAE-WGVDFVKHDC 221 (576)
Q Consensus 206 ~~~~a~-wGvdylK~D~ 221 (576)
++.++. .-||.|-+|-
T Consensus 450 ~~dla~~~~~dGilf~D 466 (671)
T PRK14582 450 YEDLAGHAAFDGILFHD 466 (671)
T ss_pred HHHHHHhCCCceEEecc
Confidence 988876 6999998873
No 154
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=24.62 E-value=6.6e+02 Score=24.90 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=28.0
Q ss_pred HHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCCeEEEcCCC
Q 008142 206 YQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSPG 253 (576)
Q Consensus 206 ~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~i~lsls~~ 253 (576)
++.+++.|+|+|=+=+-. ..+......+.+++.|..+-+.+.+.
T Consensus 81 i~~~~~~Gad~itvH~ea----~~~~~~~~l~~ik~~G~~~gval~p~ 124 (228)
T PTZ00170 81 VDDFAKAGASQFTFHIEA----TEDDPKAVARKIREAGMKVGVAIKPK 124 (228)
T ss_pred HHHHHHcCCCEEEEeccC----CchHHHHHHHHHHHCCCeEEEEECCC
Confidence 467889999998763321 11224556666777887777777653
No 155
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=24.61 E-value=70 Score=34.33 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=50.3
Q ss_pred cCCCHHHHHHHHHHH---HHhhccCCceEEEecccccccccCCccccCCCccc-cCCCCCceeCCCCCCCCCCCCChHHH
Q 008142 48 WTISEEEFLQSAEII---SQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDV-IDEWGRMIPDPDRWPSSRGGKGFTEV 123 (576)
Q Consensus 48 ~~ise~~i~~~ad~~---~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~-~d~~G~~~~d~~kFP~~~~~~Glk~l 123 (576)
..+|+++|.+..+.+ +...+++||+-|.|-.+---... +. .|.-... .|+||-=..|..||+ .++
T Consensus 147 ~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~--qF-LSp~~N~RtDeYGGslENR~Rf~--------~Ei 215 (362)
T PRK10605 147 RALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLH--QF-LSPSSNQRTDQYGGSVENRARLV--------LEV 215 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHH--Hh-cCCcCCCCCCcCCCcHHHHHHHH--------HHH
Confidence 469999999999865 45788999999998644321000 00 0000111 378886666777887 677
Q ss_pred HHHHHHc-C-CeEEEEeec
Q 008142 124 AKKVHAM-G-LKFGIHVMR 140 (576)
Q Consensus 124 a~~ih~~-G-lk~Giy~~p 140 (576)
++.|++. | -.+|+=++|
T Consensus 216 v~aVr~~vg~~~igvRis~ 234 (362)
T PRK10605 216 VDAGIAEWGADRIGIRISP 234 (362)
T ss_pred HHHHHHHcCCCeEEEEECC
Confidence 7888773 1 125555443
No 156
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=24.48 E-value=1.3e+02 Score=32.40 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=52.5
Q ss_pred cCCCHHHHHHHHHHH---HHhhccCCceEEEecccccccccCCccccCCCccc-cCCCCCceeCCCCCCCCCCCCChHHH
Q 008142 48 WTISEEEFLQSAEII---SQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDV-IDEWGRMIPDPDRWPSSRGGKGFTEV 123 (576)
Q Consensus 48 ~~ise~~i~~~ad~~---~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~-~d~~G~~~~d~~kFP~~~~~~Glk~l 123 (576)
..+|+++|.+..+.+ +...+.+||+-|.|=.+-.-... +. -|..... .|+||--..+..||+ ..+
T Consensus 132 ~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~--qF-LSp~~N~RtDeYGGslenR~Rf~--------~ei 200 (361)
T cd04747 132 REMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLID--QF-FWAGTNRRADGYGGSLAARSRFA--------AEV 200 (361)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHH--Hh-cCCCCCCCCCCCCCCHHHHHHHH--------HHH
Confidence 469999999999866 35688899999988755410000 00 0000011 367876556667776 688
Q ss_pred HHHHHHc-C--CeEEEEeec
Q 008142 124 AKKVHAM-G--LKFGIHVMR 140 (576)
Q Consensus 124 a~~ih~~-G--lk~Giy~~p 140 (576)
++.|++. | +.+||=+.+
T Consensus 201 i~air~~vG~d~~v~vRis~ 220 (361)
T cd04747 201 VKAIRAAVGPDFPIILRFSQ 220 (361)
T ss_pred HHHHHHHcCCCCeEEEEECc
Confidence 8888885 4 677776554
No 157
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=24.35 E-value=1.1e+02 Score=31.22 Aligned_cols=17 Identities=41% Similarity=0.401 Sum_probs=14.2
Q ss_pred HHHHHhhCccEEEecCC
Q 008142 206 YQQYAEWGVDFVKHDCV 222 (576)
Q Consensus 206 ~~~~a~wGvdylK~D~~ 222 (576)
++++.+||||.|=-|++
T Consensus 266 ~~~l~~~GVdgIiTD~~ 282 (282)
T cd08605 266 VERQADLGVDGVIVDHV 282 (282)
T ss_pred HHHHHHcCCCEEEeCCC
Confidence 57788999999988863
No 158
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=24.25 E-value=3.5e+02 Score=32.10 Aligned_cols=75 Identities=15% Similarity=0.288 Sum_probs=49.9
Q ss_pred cCCCHHHHHHHHHHHH---HhhccCCceEEEecccc--------cccccCCccccCCCccccCCCCCceeCCCCCCCCCC
Q 008142 48 WTISEEEFLQSAEIIS---QRLRPHGYEYVVVDYLW--------YRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRG 116 (576)
Q Consensus 48 ~~ise~~i~~~ad~~~---~gl~~~Gy~yv~iDdgW--------~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~ 116 (576)
..+|+++|.+..+.+. ...+.+||+.|.|=.+- ....++ -.|+||--..+..||+
T Consensus 539 ~~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~----------RtD~yGGslenR~r~~---- 604 (765)
T PRK08255 539 REMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQ----------RTDEYGGSLENRLRYP---- 604 (765)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCC----------CCCCCCCCHHHHhHHH----
Confidence 3589999999998663 46788999999997662 111111 1367775445556776
Q ss_pred CCChHHHHHHHHHc---CCeEEEEeec
Q 008142 117 GKGFTEVAKKVHAM---GLKFGIHVMR 140 (576)
Q Consensus 117 ~~Glk~la~~ih~~---Glk~Giy~~p 140 (576)
..+++.|++. .+.+|+=+.+
T Consensus 605 ----~eiv~~ir~~~~~~~~v~~ri~~ 627 (765)
T PRK08255 605 ----LEVFRAVRAVWPAEKPMSVRISA 627 (765)
T ss_pred ----HHHHHHHHHhcCCCCeeEEEEcc
Confidence 6788888873 4666665543
No 159
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=23.97 E-value=1.4e+02 Score=26.71 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHH
Q 008142 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (576)
Q Consensus 50 ise~~i~~~ad~~~~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~ 129 (576)
-+-+....+...+++.+++.|++-+++|=+ | .+|-+ -++.+++-+++
T Consensus 66 ~n~~aa~~vG~~la~ra~~~gi~~vvfDrg----------------------~------~~yhG-----rV~a~a~~are 112 (117)
T PRK05593 66 GNKEAAKKVGKLIAERAKAKGIKQVVFDRG----------------------G------YKYHG-----RVKALADAARE 112 (117)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEcCC----------------------C------CcccH-----HHHHHHHHHHH
Confidence 445566677777888899999999999821 1 12322 59999999999
Q ss_pred cCCeE
Q 008142 130 MGLKF 134 (576)
Q Consensus 130 ~Glk~ 134 (576)
.||+|
T Consensus 113 ~Gl~f 117 (117)
T PRK05593 113 AGLKF 117 (117)
T ss_pred hCCCC
Confidence 99986
No 160
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=23.93 E-value=5.9e+02 Score=27.29 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhCccEEEecCCCC-CC-----CC------hH------HHHHHHHHHHhC---CCCeEEEcCC
Q 008142 201 FLRSLYQQYAEWGVDFVKHDCVFG-DD-----LD------IN------EISFVSEVLKEL---DRPIVYSLSP 252 (576)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~~~~-~~-----~~------~~------~y~~m~~al~~~---gr~i~lsls~ 252 (576)
.+..-++.-++.|-|+||..+... .. ++ .+ ..+.++.+.+.+ ..|++++--+
T Consensus 218 ~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~ 290 (348)
T PRK09250 218 LTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGA 290 (348)
T ss_pred HHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCC
Confidence 444445666899999999999742 11 00 01 124577778776 5688877644
No 161
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=23.48 E-value=1.5e+02 Score=30.03 Aligned_cols=46 Identities=20% Similarity=0.165 Sum_probs=28.1
Q ss_pred HHHHHhhCccEEEecCCCCCCC-----ChHHHHHHHHHHHhCCCCeEEEcC
Q 008142 206 YQQYAEWGVDFVKHDCVFGDDL-----DINEISFVSEVLKELDRPIVYSLS 251 (576)
Q Consensus 206 ~~~~a~wGvdylK~D~~~~~~~-----~~~~y~~m~~al~~~gr~i~lsls 251 (576)
+.++++.-||+||+|-.+-... +..-.+.+-...++.|-.++..-.
T Consensus 164 l~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGV 214 (256)
T COG2200 164 LSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGV 214 (256)
T ss_pred HHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEeec
Confidence 4678999999999995432111 112235566666677766665443
No 162
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=23.16 E-value=1.4e+02 Score=32.69 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhCccEEEecC-CCCCCCCh--HHH----HHHHHHHHhCCCCeEEEcC
Q 008142 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (576)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~y----~~m~~al~~~gr~i~lsls 251 (576)
+...+..++.=|+||||=|- +....+.+ +++ +++.++-+++|+..+|..+
T Consensus 149 ~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~N 205 (412)
T cd08213 149 HAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGERKAYLAN 205 (412)
T ss_pred HHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEE
Confidence 44556678888999999994 44444443 444 4566667789998777654
No 163
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=23.00 E-value=1.6e+02 Score=32.23 Aligned_cols=51 Identities=27% Similarity=0.414 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhCccEEEecC-CCCCCCCh--HHH----HHHHHHHHhCCCCeEEEcCC
Q 008142 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLSP 252 (576)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~y----~~m~~al~~~gr~i~lsls~ 252 (576)
+..++..++.=|+||||=|- +....+.+ +++ +++.++-+++|+..+|..+.
T Consensus 152 ~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni 209 (407)
T PRK09549 152 LKEQLRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVYETTGHKTLYAVNL 209 (407)
T ss_pred HHHHHHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHHHhhCCcceEEEec
Confidence 34445667778999999995 44444543 444 45666677899987776653
No 164
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=22.82 E-value=1.5e+02 Score=32.85 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhCccEEEecC-CCCCCCCh--HHH----HHHHHHHHhCCCCeEEEcC
Q 008142 201 FLRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (576)
Q Consensus 201 ~~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~y----~~m~~al~~~gr~i~lsls 251 (576)
-+..++..++.=|+||||=|- +....+.+ +++ +++.++-+++|+..+|+..
T Consensus 162 ~~A~~~~~~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~N 219 (450)
T cd08212 162 NYGRVVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKAQAETGEVKGHYLN 219 (450)
T ss_pred HHHHHHHHHHccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeecc
Confidence 344556778888999999995 44444443 344 4677777889987766654
No 165
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=22.70 E-value=2.4e+02 Score=30.25 Aligned_cols=51 Identities=16% Similarity=0.052 Sum_probs=33.3
Q ss_pred HhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCCCCCCCCCCCCChHHHHHHHHHcCCe-EEEE
Q 008142 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLK-FGIH 137 (576)
Q Consensus 64 ~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~~kFP~~~~~~Glk~la~~ih~~Glk-~Giy 137 (576)
+.+.++|-+-|+|.|.|..... ...++.=.+| .++.+.+.|++.+-. +=|+
T Consensus 196 ~~qi~aGAdavqifDsW~g~l~-----------------~~~~~~f~~~------~~~~i~~~vk~~~~~~pii~ 247 (352)
T COG0407 196 KAQIEAGADAVQIFDSWAGVLS-----------------MIDYDEFVLP------YMKRIVREVKEVKGGVPVIH 247 (352)
T ss_pred HHHHHhCCCEEEeeccccccCC-----------------cccHHHHhhh------HHHHHHHHHHHhCCCCcEEE
Confidence 4567889999999999965321 0112222345 589999999987653 3444
No 166
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=22.51 E-value=1.5e+02 Score=31.38 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhhCccEEEecCCCCCC-----CChHHH----HHHHHHHHhCCCCeEEEcC
Q 008142 199 RAFLRSLYQQYAEWGVDFVKHDCVFGDD-----LDINEI----SFVSEVLKELDRPIVYSLS 251 (576)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~~~-----~~~~~y----~~m~~al~~~gr~i~lsls 251 (576)
+.|++++++.++++|||.|=+|+-+... .+.+.| +.+++++.+.++..++++.
T Consensus 98 ~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~a 159 (362)
T cd02872 98 KTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEAPRLLLTAA 159 (362)
T ss_pred HHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhCcCeEEEEE
Confidence 4588999999999999999999866422 223445 3566666666455676665
No 167
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=22.45 E-value=1.2e+02 Score=31.43 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=23.8
Q ss_pred eecCCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCC
Q 008142 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDD 226 (576)
Q Consensus 190 ~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~ 226 (576)
-+||.-|+ +.++.+++||+|||-+--+..++
T Consensus 138 PlDp~EPe------NTAeAIasWgl~YiVlTSVDRDD 168 (360)
T KOG2672|consen 138 PLDPNEPE------NTAEAIASWGLDYIVLTSVDRDD 168 (360)
T ss_pred CCCCCCcc------cHHHHHHHcCCCeEEEEeccccc
Confidence 47888885 55788999999999987655433
No 168
>PHA02119 hypothetical protein
Probab=22.34 E-value=81 Score=25.50 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=20.4
Q ss_pred ceeCCCCCCCCCCCCChHHHHHHHHHcCCe
Q 008142 104 MIPDPDRWPSSRGGKGFTEVAKKVHAMGLK 133 (576)
Q Consensus 104 ~~~d~~kFP~~~~~~Glk~la~~ih~~Glk 133 (576)
+..+-.|||. .=-+.++||+++.|..
T Consensus 44 isf~~~kfp~----i~~~divdylr~lgy~ 69 (87)
T PHA02119 44 ISFDVAKFPA----IMPKDIVDYLRSLGYD 69 (87)
T ss_pred EEeccccCCc----cccHHHHHHHHHccch
Confidence 5566689995 2349999999999965
No 169
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=22.19 E-value=1.7e+02 Score=32.16 Aligned_cols=51 Identities=18% Similarity=0.100 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhCccEEEecC-CCCCCCCh--HHH----HHHHHHHHhCCCCeEEEcCC
Q 008142 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLSP 252 (576)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~y----~~m~~al~~~gr~i~lsls~ 252 (576)
+...+..++.=|+||||=|- +....+.+ +++ +++.++-+++|+..+|+.+.
T Consensus 150 ~a~~~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni 207 (414)
T cd08206 150 YARVVYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAETGEAKGHYLNI 207 (414)
T ss_pred HHHHHHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEecc
Confidence 34445667778999999996 44444543 444 45667777899987776653
No 170
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=21.79 E-value=6.8e+02 Score=23.61 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=17.8
Q ss_pred ChHHHHHHHHHcCCeEEEEe
Q 008142 119 GFTEVAKKVHAMGLKFGIHV 138 (576)
Q Consensus 119 Glk~la~~ih~~Glk~Giy~ 138 (576)
-++.-.+.+++.||++|+|.
T Consensus 40 ~f~~n~~~a~~aGl~vG~Yh 59 (177)
T cd06523 40 KYKNNIKEFKKRGIPFGVYA 59 (177)
T ss_pred HHHHHHHHHHHcCCCeEEEE
Confidence 47778889999999999996
No 171
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=21.68 E-value=1.4e+02 Score=32.66 Aligned_cols=76 Identities=21% Similarity=0.398 Sum_probs=0.0
Q ss_pred CCCCCCCCC-------C----CChHHHHHHHHHcCCeEEEEeecCccccccCCCCcccccccCCCcccCCCccccccccc
Q 008142 108 PDRWPSSRG-------G----KGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGL 176 (576)
Q Consensus 108 ~~kFP~~~~-------~----~Glk~la~~ih~~Glk~Giy~~pg~~~~a~~~~spi~~~~~~~~~~~~g~~~~~~di~~ 176 (576)
+.+|+++.+ | .|+..-.+||+++|.. .||+.|....... -..|-..|
T Consensus 8 ~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~~LGv~-aiwl~Pi~~s~~~------------------~~gY~~~D--- 65 (505)
T COG0366 8 PDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVD-AIWLSPIFESPQA------------------DHGYDVSD--- 65 (505)
T ss_pred chhhcCCCCCCccCCCCcccHHhHHHhhhHHHHhCCC-EEEeCCCCCCCcc------------------CCCccccc---
Q ss_pred cccccccCCCCceeecCCcHHHHHHHHHHHHHHHhhCccEE
Q 008142 177 KERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFV 217 (576)
Q Consensus 177 ~~~~~~~~~~~~~~lD~t~p~~~~~~~~~~~~~a~wGvdyl 217 (576)
++.||+ +-|+.+.++.+++...+-|+..+
T Consensus 66 -----------y~~id~-~~Gt~~d~~~li~~~H~~gi~vi 94 (505)
T COG0366 66 -----------YTKVDP-HFGTEEDFKELVEEAHKRGIKVI 94 (505)
T ss_pred -----------hhhcCc-ccCCHHHHHHHHHHHHHCCCEEE
No 172
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=21.42 E-value=2.4e+02 Score=29.39 Aligned_cols=54 Identities=15% Similarity=0.261 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhCccEEEecCCCCCC--CChHHHH----HHHHHHHhC---CCCeEEEcCC
Q 008142 199 RAFLRSLYQQYAEWGVDFVKHDCVFGDD--LDINEIS----FVSEVLKEL---DRPIVYSLSP 252 (576)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~~~--~~~~~y~----~m~~al~~~---gr~i~lsls~ 252 (576)
+.|++++++.+++.|+|.|=+|+-+... .+.+.|. .++.++.+. ++..++++..
T Consensus 93 ~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~~~~lsi~v 155 (334)
T smart00636 93 KKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKEGAEGKGYLLTIAV 155 (334)
T ss_pred HHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHhcccCCceEEEEEe
Confidence 4578999999999999999999876533 2344554 345555443 4567777754
No 173
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=21.38 E-value=1.3e+02 Score=29.43 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHcCCeEEEEeecCccc
Q 008142 119 GFTEVAKKVHAMGLKFGIHVMRGIST 144 (576)
Q Consensus 119 Glk~la~~ih~~Glk~Giy~~pg~~~ 144 (576)
.+..+.++||++|+|+||-+.|.+..
T Consensus 93 ~~~~~i~~ik~~g~k~GialnP~T~~ 118 (201)
T PF00834_consen 93 DPKETIKYIKEAGIKAGIALNPETPV 118 (201)
T ss_dssp THHHHHHHHHHTTSEEEEEE-TTS-G
T ss_pred CHHHHHHHHHHhCCCEEEEEECCCCc
Confidence 47899999999999999999997643
No 174
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=21.32 E-value=1.9e+02 Score=32.38 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhCccEEEecCC-CCCCCCh--HHH----HHHHHHHHhCCCCeEEEcC
Q 008142 202 LRSLYQQYAEWGVDFVKHDCV-FGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (576)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~~-~~~~~~~--~~y----~~m~~al~~~gr~i~lsls 251 (576)
+..++..++.=|+||||=|-. ....+.+ +++ +++.++-+++|+..+|+.+
T Consensus 178 ~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~N 234 (468)
T PRK04208 178 YGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGERKGHYLN 234 (468)
T ss_pred HHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCcceEEEe
Confidence 444566677789999999954 4344443 344 4667777889987766654
No 175
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=21.31 E-value=2.4e+02 Score=28.82 Aligned_cols=63 Identities=14% Similarity=0.286 Sum_probs=44.9
Q ss_pred eeecCCcHHHHHHHHHHHHHHHhhCccEEEecCC---C-CCC-CChHHHHHHHHHHHhCCCCeEEEcC
Q 008142 189 MSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV---F-GDD-LDINEISFVSEVLKELDRPIVYSLS 251 (576)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGvdylK~D~~---~-~~~-~~~~~y~~m~~al~~~gr~i~lsls 251 (576)
..||.|||=+..-=++.++--++-|+-|+.+-=- - ++. +....++..-+++.+.++-+|+.+-
T Consensus 69 llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~~~rVflt~G 136 (257)
T COG2099 69 LLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQLGRRVFLTTG 136 (257)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhccCCcEEEecC
Confidence 5799999988766677777788999999998621 1 111 2334566666677778888888774
No 176
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=21.22 E-value=1.5e+02 Score=32.62 Aligned_cols=50 Identities=20% Similarity=0.086 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhCccEEEecC-CCCCCCCh--HHH----HHHHHHHHhCCCCeEEEcC
Q 008142 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (576)
Q Consensus 202 ~~~~~~~~a~wGvdylK~D~-~~~~~~~~--~~y----~~m~~al~~~gr~i~lsls 251 (576)
+..++..++.=|+||||=|- +....+.+ +++ +++.++-+++|+..+|+.+
T Consensus 178 ~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~ya~N 234 (424)
T cd08208 178 FAELGYQSWLGGLDIAKDDEMLADVDWCPLEERAALLGKARRRAEAETGVPKIYLAN 234 (424)
T ss_pred HHHHHHHHHcCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEE
Confidence 34456667888999999994 44444544 454 4566777789987766554
No 177
>TIGR03586 PseI pseudaminic acid synthase.
Probab=21.00 E-value=3.5e+02 Score=28.71 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=22.8
Q ss_pred HHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCCeEEEc
Q 008142 207 QQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSL 250 (576)
Q Consensus 207 ~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~i~lsl 250 (576)
+.+.+.|++++|+=-. +.+.+. +-+.+.++|+||++|.
T Consensus 104 d~l~~~~v~~~KI~S~-----~~~n~~-LL~~va~~gkPvilst 141 (327)
T TIGR03586 104 DFLESLDVPAYKIASF-----EITDLP-LIRYVAKTGKPIIMST 141 (327)
T ss_pred HHHHHcCCCEEEECCc-----cccCHH-HHHHHHhcCCcEEEEC
Confidence 5567889999998532 122232 3334556677777665
No 178
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=20.85 E-value=1.7e+02 Score=29.74 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=16.4
Q ss_pred HHHHHHHHHcCCeEEEEe
Q 008142 121 TEVAKKVHAMGLKFGIHV 138 (576)
Q Consensus 121 k~la~~ih~~Glk~Giy~ 138 (576)
+.+++.+|++|+++.+|+
T Consensus 221 ~~~v~~~~~~G~~v~vWT 238 (264)
T cd08575 221 PNLFDHLRKRGIQVYLWV 238 (264)
T ss_pred HHHHHHHHhcCCcEEEEE
Confidence 679999999999999996
No 179
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=20.55 E-value=2e+02 Score=29.96 Aligned_cols=56 Identities=11% Similarity=0.079 Sum_probs=35.5
Q ss_pred HHHH-HHHHHHHHHHHhhCccEEEec-CCCCCC----CChHHH----HHHHHHHHhCCCCeEEEcC
Q 008142 196 GAGR-AFLRSLYQQYAEWGVDFVKHD-CVFGDD----LDINEI----SFVSEVLKELDRPIVYSLS 251 (576)
Q Consensus 196 p~~~-~~~~~~~~~~a~wGvdylK~D-~~~~~~----~~~~~y----~~m~~al~~~gr~i~lsls 251 (576)
|..+ .|++++++.++++|||.|=+| +-+... .+.+.| +.++++|.+.+..+.+++.
T Consensus 90 ~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~~~~~l~~~v~ 155 (318)
T cd02876 90 EQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHSANLKLILVIP 155 (318)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhhcCCEEEEEEc
Confidence 4444 478999999999999999999 433321 123344 3455666665655555543
No 180
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=20.51 E-value=71 Score=30.73 Aligned_cols=23 Identities=13% Similarity=0.028 Sum_probs=19.6
Q ss_pred hHHHHHHHHHc-CCeEEEEeecCc
Q 008142 120 FTEVAKKVHAM-GLKFGIHVMRGI 142 (576)
Q Consensus 120 lk~la~~ih~~-Glk~Giy~~pg~ 142 (576)
++.|.+.|+++ |.+++||..+-.
T Consensus 112 ~~~f~~~v~~~~G~~~~iY~~~~~ 135 (191)
T cd06413 112 LQVFLDALEAHYGKRPIIYTTYDF 135 (191)
T ss_pred HHHHHHHHHHHHCCCeEEEeCHHH
Confidence 68899999985 999999998743
No 181
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=20.45 E-value=58 Score=34.58 Aligned_cols=34 Identities=12% Similarity=0.050 Sum_probs=30.5
Q ss_pred eeecCCcHHHHHHHHHHHHHHHhhCc-cEEEecCC
Q 008142 189 MSVNTKLGAGRAFLRSLYQQYAEWGV-DFVKHDCV 222 (576)
Q Consensus 189 ~~lD~t~p~~~~~~~~~~~~~a~wGv-dylK~D~~ 222 (576)
..+|.|||.++++.+.+...+.+.|| ++.|++.+
T Consensus 263 HvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~m 297 (410)
T KOG0410|consen 263 HVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNM 297 (410)
T ss_pred EEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHH
Confidence 68999999999999999999999999 68877754
No 182
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=20.40 E-value=2e+02 Score=30.16 Aligned_cols=52 Identities=10% Similarity=0.183 Sum_probs=34.3
Q ss_pred HhhccCCceEEEecccccccccCCccccCCCccccCCCCCceeCC-CC--CCCCCCCCChHHHHHHHHHcCCeEEEEee
Q 008142 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDP-DR--WPSSRGGKGFTEVAKKVHAMGLKFGIHVM 139 (576)
Q Consensus 64 ~gl~~~Gy~yv~iDdgW~~~~~~g~~~~~~~~~~~d~~G~~~~d~-~k--FP~~~~~~Glk~la~~ih~~Glk~Giy~~ 139 (576)
+.+.++|-+.|+++|-|.... .+.|.. ++ .| -++.+.+.+|+.|-.+.+|..
T Consensus 187 ~~~~~~Gad~I~i~dp~a~~~------------------~lsp~~f~e~~~p------~~k~i~~~i~~~g~~~ilH~C 241 (340)
T TIGR01463 187 KAMVEAGADVIAIADPFASSD------------------LISPETYKEFGLP------YQKRLFAYIKEIGGITVLHIC 241 (340)
T ss_pred HHHHHcCCCEEEecCCccCcc------------------ccCHHHHHHHHHH------HHHHHHHHHHhcCCceEEEEC
Confidence 346788999999998885310 111110 11 24 389999999999887788754
No 183
>PRK07534 methionine synthase I; Validated
Probab=20.12 E-value=2.9e+02 Score=29.36 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=42.5
Q ss_pred CCcHHHHHHHHHHHHHHHhhCccEEEecCCCCCCCChHHHHHHHHHHHhCCCCeEEEcC
Q 008142 193 TKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLS 251 (576)
Q Consensus 193 ~t~p~~~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y~~m~~al~~~gr~i~lsls 251 (576)
.+....++++...++.|.+=|||+|=+--+ .+.++..++.+++++.+.|+++|++
T Consensus 124 ~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~----p~l~E~~a~~~~~~~~~~Pv~vSft 178 (336)
T PRK07534 124 LTHALAVEAFHEQAEGLKAGGADVLWVETI----SAPEEIRAAAEAAKLAGMPWCGTMS 178 (336)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecc----CCHHHHHHHHHHHHHcCCeEEEEEE
Confidence 344566777777788899999999877633 3567788888888888999998875
No 184
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=20.11 E-value=3.4e+02 Score=27.53 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhCccEEEecCCCCCCCChHHH----HHHHHHHHhCC
Q 008142 199 RAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEI----SFVSEVLKELD 243 (576)
Q Consensus 199 ~~~~~~~~~~~a~wGvdylK~D~~~~~~~~~~~y----~~m~~al~~~g 243 (576)
+.+++++++.+.++|||.|-+|+-+.. .+.+.+ +.++++|++.+
T Consensus 99 ~~fv~S~~~~l~~~~fDGiDiDwE~~~-~d~~~f~~ll~~l~~~l~~~~ 146 (253)
T cd06544 99 SNAVSSLTSIIQTYNLDGIDIDYEHFP-ADPDTFVECIGQLITELKNNG 146 (253)
T ss_pred HHHHHHHHHHHHHhCCCceeeecccCC-cCHHHHHHHHHHHHHHhhhcC
Confidence 455788888999999999999997653 234444 34566665544
Done!