BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008143
         (576 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=spo15 PE=1 SV=1
          Length = 1957

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 26/215 (12%)

Query: 16  VRGRLHSVPLHNERVQVFKIKSSKKKKKKGSFSCCLQSKGGVSYRRVSLRTFDSFRCFCS 75
           VR +L ++  H   +   ++ SS KK K  S    L S+  VSY +  L           
Sbjct: 142 VRSKLAALE-HENGILSLQLSSSNKKDKNTSSVTTLTSEEDVSYFQKKL----------- 189

Query: 76  ANNSSNNSEKNEDNASNDSSVATTSSALDETE---EKSSSSSSSSSSSNANEFTSDKTPT 132
            N  SN S K  +       + T +  LD+ E   EK     SS  +S A E  S+K+  
Sbjct: 190 TNMESNFSAKQSEAYDLSRQLLTVTEKLDKKEKDYEKIKEDVSSIKASLAEEQASNKSLR 249

Query: 133 SAS--------SPPPTMSPVGSAHNNFQIDSFKLMELLGPEKVDPADVKLIKE---NLFG 181
                      S   T+S +    N+ + +   L E L    ++  D KL++E   N+  
Sbjct: 250 GEQERLEKLLVSSNKTVSTLRQTENSLRAECKTLQEKLEKCAINEEDSKLLEELKHNVAN 309

Query: 182 YSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAK 216
           YS   V K++   DL   I    NL+ +R+ +  K
Sbjct: 310 YSDAIVHKDKLIEDLSTRISEFDNLKSERDTLSIK 344


>sp|P25280|YD3M_HERAU Uncharacterized 68.4 kDa protein in HgiDIIM 3'region
           OS=Herpetosiphon aurantiacus PE=4 SV=1
          Length = 611

 Score = 33.1 bits (74), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 84  EKNEDNASNDSSVATTSSALD-ETEEKSSSSSSSSSSSNANEFTSDKTPTSASSPPP 139
           EK   NAS+DSS AT +++ D  T  +++SS ++      N F  D  P    SPPP
Sbjct: 377 EKENTNASSDSSTATENASSDSSTATENASSETNDGEVEDNSFFDDDIP--EPSPPP 431


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,700,381
Number of Sequences: 539616
Number of extensions: 9458580
Number of successful extensions: 99423
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 384
Number of HSP's that attempted gapping in prelim test: 64088
Number of HSP's gapped (non-prelim): 23921
length of query: 576
length of database: 191,569,459
effective HSP length: 123
effective length of query: 453
effective length of database: 125,196,691
effective search space: 56714101023
effective search space used: 56714101023
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)