BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008145
(576 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 300 bits (768), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 157/390 (40%), Positives = 232/390 (59%), Gaps = 6/390 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G ++P+G + F+ L G SG+ I FD ++ P +IAAE+ ++
Sbjct: 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEV-DVDPGAYL 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K +R+D+F+ Y L A + AL D G+ + +LD + G L+G+G+GGM+ +
Sbjct: 61 DRKELRRLDRFVQYALIAAQLALEDAGLKPE---DLDPERVGTLVGTGIGGMETWEAQSR 117
Query: 285 A-LRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
L +++PF +P NM SA +AM G+ GP+ ++ TACAT + +A I
Sbjct: 118 VFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQL 177
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXX 403
GEA+++L GG++AA+ P+ +G F RALS RN +P KASRP+ ++RDGFVM
Sbjct: 178 GEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLV 237
Query: 404 XXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNY 463
HAKKRGA+IYAE G ++DA+H+TEPHP+G G L + +AL +G++ E V Y
Sbjct: 238 LEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGY 297
Query: 464 INAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRT 522
INAH TSTP GD E A+ FG + + L V+STKSMIGHLL
Sbjct: 298 INAHGTSTPVGDRAEVLAIKRVFGDHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYH 357
Query: 523 GWIHPNINLENPDAVVDTNVLVGPKKERLE 552
G I P INLE+PD +D + + P++ +++
Sbjct: 358 GVIPPTINLEDPDPELDLDFVPEPREAKVD 387
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 279 bits (713), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 159/399 (39%), Positives = 223/399 (55%), Gaps = 6/399 (1%)
Query: 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 220
++++KRVVVTG+G ++P+G+ ++ L+EG +GI I FD + + E+K F
Sbjct: 3 NLEKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDA 62
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
++ K +KRMD+F + + A ++A+ D + V+NEL+ + GVLIG+G+GG+KV
Sbjct: 63 TQFLDRKEAKRMDRFCHFAVCASQQAINDAKL---VINELNADEIGVLIGTGIGGLKVLE 119
Query: 281 DAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 339
D L + +PF +P NM S + A++LG GPN TACA + I +A
Sbjct: 120 DQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFR 179
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXX 399
+ G A M+CGG++AA+ P+ GF + RALS RN+DP ASRP+D +RDGFVM
Sbjct: 180 LVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGS 239
Query: 400 XXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRE 459
A RGAKIY E G + T DAYH+T P PDG G I AL SG+ E
Sbjct: 240 GILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPE 299
Query: 460 DVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVNSTKSMIGHLLXXXXXXXXXXXXX 518
V+YINAH TSTPA D+ E +A+ G + + V+STKSM GHLL
Sbjct: 300 MVSYINAHGTSTPANDVTETRAIKQALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVM 359
Query: 519 XXRTGWIHPNINLENPDAVVDTNVLVGPKKERLEVKAAL 557
+ P INLENPD D + + G + L V AL
Sbjct: 360 AIAEDKVPPTINLENPDPECDLDYVPGQSRA-LIVDVAL 397
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 257 bits (656), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 217/383 (56%), Gaps = 6/383 (1%)
Query: 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG 222
+ KRVV+TGMG +SP+G++ + N L+GV+GI +I D + +A E+K+F+ +
Sbjct: 26 QNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIED 85
Query: 223 WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDA 282
+ K ++RMD+F Y + A ++A+ D + +NE + GV IGSG+GGM+ F A
Sbjct: 86 HIDKKEARRMDRFTQYAIVAAREAVKDAQLD---INENTADRIGVWIGSGIGGMETFEIA 142
Query: 283 IEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ L ++++PF VP +M + +++DLG GPN + TACAT I A +
Sbjct: 143 HKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIV 202
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXX 401
RG+A+ M+ GG++A + + + GF A RALS N+D A RP+ RDGFVM
Sbjct: 203 QRGDADAMITGGTEAPITHMAIAGFSASRALST-NDDIETACRPFQEGRDGFVMGEGAGI 261
Query: 402 XXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDV 461
A+ RGA IYAE G T DAYH+T P P+G G ++ A+ +G+ +DV
Sbjct: 262 LVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDV 321
Query: 462 NYINAHATSTPAGDIKEYQALIHCFGQ-NRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 520
Y+NAH TSTP GD+ E +A+ + FG+ + L+V+STKSM GHLL
Sbjct: 322 QYLNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSI 381
Query: 521 RTGWIHPNINLENPDAVVDTNVL 543
+ + P I+ PD D +++
Sbjct: 382 KDSKVAPTIHAVTPDPECDLDIV 404
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 252 bits (643), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 152/390 (38%), Positives = 219/390 (56%), Gaps = 5/390 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+ ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 74
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 75 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 132
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ +K++PF VP NM + L + G GP+ SI+TAC + I +AA I
Sbjct: 133 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARII 192
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXX 401
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+
Sbjct: 193 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGM 252
Query: 402 XXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDV 461
HAKKRGAKIYAE G +SDAYHMT P +G G L + AL +G+ +
Sbjct: 253 LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQI 312
Query: 462 NYINAHATSTPAGDIKEYQALIHCFGQNRG-LRVNSTKSMIGHLLXXXXXXXXXXXXXXX 520
Y+NAH TSTPAGD E QA+ FG+ + V+STKSM GHLL
Sbjct: 313 GYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILAL 372
Query: 521 RTGWIHPNINLENPDAVVDTNVLVGPKKER 550
R + P INL+NPD D + + P + R
Sbjct: 373 RDQAVPPTINLDNPDEGCDLDFV--PHEAR 400
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 252 bits (643), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 152/388 (39%), Positives = 218/388 (56%), Gaps = 5/388 (1%)
Query: 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW 223
++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 2 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 61
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI 283
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 62 ISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEENHT 119
Query: 284 EALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
+ +K++PF VP NM + L + G GP+ SI+TAC + I +AA I
Sbjct: 120 SLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAY 179
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXX 403
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+
Sbjct: 180 GDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLV 239
Query: 404 XXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNY 463
HAKKRGAKIYAE G +SDAYHMT P +G G L + AL +G+ + Y
Sbjct: 240 LEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGY 299
Query: 464 INAHATSTPAGDIKEYQALIHCFGQNRG-LRVNSTKSMIGHLLXXXXXXXXXXXXXXXRT 522
+NAH TSTPAGD E QA+ FG+ + V+STKSM GHLL R
Sbjct: 300 VNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRD 359
Query: 523 GWIHPNINLENPDAVVDTNVLVGPKKER 550
+ P INL+NPD D + + P + R
Sbjct: 360 QAVPPTINLDNPDEGCDLDFV--PHEAR 385
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 250 bits (639), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 151/393 (38%), Positives = 212/393 (53%), Gaps = 11/393 (2%)
Query: 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 220
HMK RVVVTG G+ SP+G+ P+ F+N+L G GI I FD + F AAEI+ F
Sbjct: 19 HMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPF 78
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
D + K + R D + LY L A ++A+ + + +N + + GV++ SG+GG+K
Sbjct: 79 DKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALN---RDRFGVIVASGIGGIKEIE 135
Query: 281 DAIEALRISYK---KMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNA 337
D + LR+ K ++ P +P A NM S +AM G G SI+TAC++SN I +A
Sbjct: 136 DQV--LRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDA 193
Query: 338 ANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXX 397
I G +VML GG++A++ P + GF A ALS DPT+AS P+D +R+GFVM
Sbjct: 194 FRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVMGE 252
Query: 398 XXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVS 457
HA+KRGA I AE G T DAYHMT PHP+G G I I+ AL + +S
Sbjct: 253 GSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEIS 312
Query: 458 REDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXX 517
E V Y+NAH TSTPA + E A++ G+ + V+STKS GHLL
Sbjct: 313 PEQVAYVNAHGTSTPANEKGESGAIVAVLGKE--VPVSSTKSFTGHLLGAAGAVEAIVTI 370
Query: 518 XXXRTGWIHPNINLENPDAVVDTNVLVGPKKER 550
R ++ ++ NV+ G E+
Sbjct: 371 EAMRHNFVPMTAGTSEVSDYIEANVVYGQGLEK 403
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 250 bits (638), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 151/390 (38%), Positives = 218/390 (55%), Gaps = 5/390 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+ ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 74
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 75 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 132
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ +K++PF VP NM + L + G GP+ SI+TAC + I +AA I
Sbjct: 133 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARII 192
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXX 401
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+
Sbjct: 193 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGM 252
Query: 402 XXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDV 461
HAKKRGAKIYAE G +SDAYHMT P +G G L + AL +G+ +
Sbjct: 253 LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQI 312
Query: 462 NYINAHATSTPAGDIKEYQALIHCFGQNRG-LRVNSTKSMIGHLLXXXXXXXXXXXXXXX 520
Y+NAH TSTPAGD E QA+ FG+ + V+ST SM GHLL
Sbjct: 313 GYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTASMTGHLLGAAGAVESIYSILAL 372
Query: 521 RTGWIHPNINLENPDAVVDTNVLVGPKKER 550
R + P INL+NPD D + + P + R
Sbjct: 373 RDQAVPPTINLDNPDEGCDLDFV--PHEAR 400
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 249 bits (635), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 151/390 (38%), Positives = 218/390 (55%), Gaps = 5/390 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+ ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 74
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 75 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 132
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ +K++PF VP NM + L + G GP+ SI+TA + I +AA I
Sbjct: 133 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSGVHNIGHAARII 192
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXX 401
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+
Sbjct: 193 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGM 252
Query: 402 XXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDV 461
HAKKRGAKIYAE G +SDAYHMT P +G G L + AL +G+ +
Sbjct: 253 LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQI 312
Query: 462 NYINAHATSTPAGDIKEYQALIHCFGQNRG-LRVNSTKSMIGHLLXXXXXXXXXXXXXXX 520
Y+NAH TSTPAGD E QA+ FG+ + V+STKSM GHLL
Sbjct: 313 GYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILAL 372
Query: 521 RTGWIHPNINLENPDAVVDTNVLVGPKKER 550
R + P INL+NPD D + + P + R
Sbjct: 373 RDQAVPPTINLDNPDEGCDLDFV--PHEAR 400
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 248 bits (633), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 151/390 (38%), Positives = 218/390 (55%), Gaps = 5/390 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+ ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 74
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 75 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 132
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ +K++PF VP NM + L + G GP+ SI+TA + I +AA I
Sbjct: 133 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARII 192
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXX 401
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+
Sbjct: 193 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGM 252
Query: 402 XXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDV 461
HAKKRGAKIYAE G +SDAYHMT P +G G L + AL +G+ +
Sbjct: 253 LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQI 312
Query: 462 NYINAHATSTPAGDIKEYQALIHCFGQNRG-LRVNSTKSMIGHLLXXXXXXXXXXXXXXX 520
Y+NAH TSTPAGD E QA+ FG+ + V+STKSM GHLL
Sbjct: 313 GYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILAL 372
Query: 521 RTGWIHPNINLENPDAVVDTNVLVGPKKER 550
R + P INL+NPD D + + P + R
Sbjct: 373 RDQAVPPTINLDNPDEGCDLDFV--PHEAR 400
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 247 bits (631), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 148/348 (42%), Positives = 201/348 (57%), Gaps = 11/348 (3%)
Query: 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 220
HMK RVVVTG G+ SP+G+ P F+N+L G GI I FD + F AAEI+ F
Sbjct: 19 HMKLNRVVVTGYGVTSPIGNTPAEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPF 78
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
D + K + R D + LY L A ++A+ + DV L++ + GV++ SG+GG+K
Sbjct: 79 DKYFVKKDTNRFDNYSLYALYAAQEAVNHANL--DVA-ALNRDRFGVIVASGIGGIKEIE 135
Query: 281 DAIEALRISYK---KMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNA 337
D + LR+ K ++ P +P A NM S +AM G G SI+TAC++SN I +A
Sbjct: 136 DQV--LRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDA 193
Query: 338 ANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXX 397
I G +VML GG++A++ P + GF A ALS DPT+AS P+D +R+GFVM
Sbjct: 194 FRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVMGE 252
Query: 398 XXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVS 457
HA+KRGA I AE G T DAYHMT PHP+G G I I+ AL + +S
Sbjct: 253 GSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEIS 312
Query: 458 REDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLL 505
E V Y+NAH TSTPA + E A++ G + + V+STKS GHLL
Sbjct: 313 PEQVAYVNAHGTSTPANEKGESGAIVAVLG--KAVPVSSTKSFTGHLL 358
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 246 bits (627), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 145/348 (41%), Positives = 200/348 (57%), Gaps = 11/348 (3%)
Query: 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 220
HMK RVVVTG G+ SP+G+ P+ F+N+L G GI I FD + F AAEI+ F
Sbjct: 20 HMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPF 79
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
D + K + R D + LY L A ++A+ + + +N + + GV++ SG+GG+K
Sbjct: 80 DKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALN---RDRFGVIVASGIGGIKEIE 136
Query: 281 DAIEALRISYK---KMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNA 337
D + LR+ K ++ P +P A NM S +AM G G SI+TAC++SN I +A
Sbjct: 137 DQV--LRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDA 194
Query: 338 ANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXX 397
I G +VML GG++A++ P + GF A ALS DPT+AS P+D +R+GFVM
Sbjct: 195 FRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVMGE 253
Query: 398 XXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVS 457
HA+KRGA I AE G T DAYHMT PHP+G G I I+ AL + +S
Sbjct: 254 GSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEIS 313
Query: 458 REDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLL 505
E V Y+NA TSTPA + E A++ G+ + V+STKS GHLL
Sbjct: 314 PEQVAYVNAAGTSTPANEKGESGAIVAVLGKE--VPVSSTKSFTGHLL 359
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/388 (36%), Positives = 220/388 (56%), Gaps = 6/388 (1%)
Query: 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW 223
++RVVVTG+G V+P+G++ + + N +GV+G+++ + FP KIAAE+K F + +
Sbjct: 3 KRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKXTRLNPDDFPVKIAAELKDFDVEKY 62
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI 283
+ K +++ D+F Y + + + A+ D G+ V+++ + ++ GV IGSG+GG + F
Sbjct: 63 LEKKEARKXDRFTHYAIASAEXAVQDSGL---VIDDSNANRVGVWIGSGIGGXETFETQY 119
Query: 284 EA-LRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 342
E L +++++PF VP + GS +++ G G N + TACAT+ I +A I
Sbjct: 120 EIFLNRGHRRVSPFFVPXXIPDXGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKVIE 179
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXX 402
RG+A+ + GG++A + L GF A +ALS N DP A RP+D +RDGF++
Sbjct: 180 RGDADAXITGGAEAPITKXSLAGFTANKALSL-NPDPETACRPFDKDRDGFIIGEGAGIV 238
Query: 403 XXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVN 462
HAK RGAKIYAE G T DAYH+T P P+G G + A+ +G++ + V+
Sbjct: 239 ILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAXKXAIDDAGLTPDKVD 298
Query: 463 YINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLXXXXXXXXXXXXXXXR 521
YINAH TSTP D E QA+ FG++ + L ++STKS GH L R
Sbjct: 299 YINAHGTSTPYNDEYETQAIKTVFGEHAKKLAISSTKSXTGHTLGASGGIEAIFALLTIR 358
Query: 522 TGWIHPNINLENPDAVVDTNVLVGPKKE 549
I P I+L+N D V D + + +E
Sbjct: 359 DNIIAPTIHLKNQDEVCDLDYVPNEARE 386
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 226 bits (576), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 147/413 (35%), Positives = 215/413 (52%), Gaps = 18/413 (4%)
Query: 158 KKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKS 217
+ P RVVVTG+G+VSPLG ++ + L+ G SG+ + K+ ++
Sbjct: 17 QGPGSMTLRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQD 76
Query: 218 FSTD--GWVAPKLS------KRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLI 269
+ D G P+ S ++MD+F+ + A +ALA+ G + E + + ++
Sbjct: 77 VAEDPEGGFDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEA--EQQRERTATVV 134
Query: 270 GSGLGGMKVFYDAIEALRIS----YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIST 325
SG+GG F EA+RI ++++PF +PF +N+ + +++ + GP T
Sbjct: 135 ASGIGG---FPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVT 191
Query: 326 ACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASR 384
ACA S I +A I GEA+V+L GG++AA + LGGF A RALS + +P +ASR
Sbjct: 192 ACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASR 251
Query: 385 PWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVI 444
P+D +RDGFVM HA RGA+ AE G T+DAYHMT DG G +
Sbjct: 252 PFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAM 311
Query: 445 LCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHL 504
++ AL V+ E V+Y+NAHATSTP GD E +AL FG G ++STKS GHL
Sbjct: 312 RAMKLALRMGDVAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVGAGPAISSTKSATGHL 371
Query: 505 LXXXXXXXXXXXXXXXRTGWIHPNINLENPDAVVDTNVLVGPKKERLEVKAAL 557
L R G + +NLE+PD D L+GP + V+ AL
Sbjct: 372 LGAAGAIEAAFSILALRDGVLPGTLNLEHPDPAADGLDLIGPAARHVPVEIAL 424
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 223 bits (567), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 146/413 (35%), Positives = 214/413 (51%), Gaps = 18/413 (4%)
Query: 158 KKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKS 217
+ P RVVVTG+G+VSPLG ++ + L+ G SG+ + K+ ++
Sbjct: 17 QGPGSMTLRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQD 76
Query: 218 FSTD--GWVAPKLS------KRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLI 269
+ D G P+ S ++MD+F+ + A +ALA+ G + E + + ++
Sbjct: 77 VAEDPEGGFDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEA--EQQRERTATVV 134
Query: 270 GSGLGGMKVFYDAIEALRIS----YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIST 325
SG+GG F EA+RI ++++PF +PF +N+ + +++ + GP T
Sbjct: 135 ASGIGG---FPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVT 191
Query: 326 ACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASR 384
A A S I +A I GEA+V+L GG++AA + LGGF A RALS + +P +ASR
Sbjct: 192 AXAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASR 251
Query: 385 PWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVI 444
P+D +RDGFVM HA RGA+ AE G T+DAYHMT DG G +
Sbjct: 252 PFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAM 311
Query: 445 LCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHL 504
++ AL V+ E V+Y+NAHATSTP GD E +AL FG G ++STKS GHL
Sbjct: 312 RAMKLALRMGDVAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVGAGPAISSTKSATGHL 371
Query: 505 LXXXXXXXXXXXXXXXRTGWIHPNINLENPDAVVDTNVLVGPKKERLEVKAAL 557
L R G + +NLE+PD D L+GP + V+ AL
Sbjct: 372 LGAAGAIEAAFSILALRDGVLPGTLNLEHPDPAADGLDLIGPAARHVPVEIAL 424
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 216 bits (549), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 135/388 (34%), Positives = 202/388 (52%), Gaps = 11/388 (2%)
Query: 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG- 222
+RVV+TG+GLV+PLG + ++ L+ G SGI + + S P +AA + S +G
Sbjct: 20 HRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQ 79
Query: 223 -----WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 277
+V+ K M + + A + A+ D G +E D+ GV IG G+ ++
Sbjct: 80 FNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQ--SEADQVATGVAIGMGMIPLE 137
Query: 278 VFYD-AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN 336
V + A+ Y K++PF VP NM + +++ GPN+++STAC T + +
Sbjct: 138 VVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTGAHAVGD 197
Query: 337 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMX 396
+ I G+A+VM+ GG+D+ + P+ L GF RALS N+DP A RP+ RDGFVM
Sbjct: 198 SFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST-NSDPKLACRPFHPKRDGFVMG 256
Query: 397 XXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGV 456
HA +R A+IYAE G + DA H+T P P+G G + C+ AL +GV
Sbjct: 257 EGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGV 316
Query: 457 SREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLXXXXXXXXXX 515
E+++YINAHATSTP GD E +A+ H F + L V+STK GHLL
Sbjct: 317 QPEEISYINAHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAF 376
Query: 516 XXXXXRTGWIHPNINLENPDAVVDTNVL 543
+ P +NL+ + D N +
Sbjct: 377 TTLACYYQKLPPTLNLDCSEPEFDLNYV 404
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 218/396 (55%), Gaps = 13/396 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-------S 217
+RVV+TG+GLVSPL + + LL G SG + F+ +IA I +
Sbjct: 10 RRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIPVGDGTNGT 69
Query: 218 FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 277
F+ D + PK +++D F++Y + A +AL D G + N+ D+ + GVLIGSG+GG++
Sbjct: 70 FNPDLHMDPKEQRKVDPFIVYAVGAADQALDDAGWHPE--NDEDQVRTGVLIGSGIGGIE 127
Query: 278 VFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN 336
+A LR ++++PF +P N+ S +++ GPN+S+ TACAT I +
Sbjct: 128 GIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACATGTHAIGD 187
Query: 337 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS-QRNNDPTKASRPWDINRDGFVM 395
AA I G+A+VM+ GG+++ V I L GF AC+ALS +RN+DPT ASRP+D +RDGFVM
Sbjct: 188 AARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDEDRDGFVM 247
Query: 396 XXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSG 455
HA RGAKIYAE G + DA+H+T P G G C+ AL +G
Sbjct: 248 GEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAALKRAG 307
Query: 456 VSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRG-LRVNSTKSMIGHLLXXXXXXXXX 514
+ ++++YINAH TST A D E A+ G+ + ++STKS IGHLL
Sbjct: 308 IVPDEIDYINAHGTSTMA-DTIELGAVERVVGEAAAKISMSSTKSSIGHLLGAAGAAEAV 366
Query: 515 XXXXXXRTGWIHPNINLENPDAVVDTNVLVGPKKER 550
R +NL+NP A +++ +ER
Sbjct: 367 FSTLAIRDNIAPATLNLDNPAAQTRIDLVPHKPRER 402
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 212 bits (539), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 134/388 (34%), Positives = 201/388 (51%), Gaps = 11/388 (2%)
Query: 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG- 222
+RVV+TG+GLV+PLG + ++ L+ G SGI + + S P +AA + S +G
Sbjct: 26 HRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQ 85
Query: 223 -----WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 277
+V+ K M + + A + A+ D G +E D+ GV IG G+ ++
Sbjct: 86 FNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQ--SEADQVATGVAIGMGMIPLE 143
Query: 278 VFYD-AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN 336
V + A+ Y K++PF VP NM + +++ GPN+++STA T + +
Sbjct: 144 VVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTAXTTGAHAVGD 203
Query: 337 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMX 396
+ I G+A+VM+ GG+D+ + P+ L GF RALS N+DP A RP+ RDGFVM
Sbjct: 204 SFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST-NSDPKLACRPFHPKRDGFVMG 262
Query: 397 XXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGV 456
HA +R A+IYAE G + DA H+T P P+G G + C+ AL +GV
Sbjct: 263 EGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGV 322
Query: 457 SREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLXXXXXXXXXX 515
E+++YINAHATSTP GD E +A+ H F + L V+STK GHLL
Sbjct: 323 QPEEISYINAHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAF 382
Query: 516 XXXXXRTGWIHPNINLENPDAVVDTNVL 543
+ P +NL+ + D N +
Sbjct: 383 TTLACYYQKLPPTLNLDCSEPEFDLNYV 410
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 142/398 (35%), Positives = 211/398 (53%), Gaps = 19/398 (4%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-------S 217
+RVV+TG+GLVSPL + + + LLEG SG+ I FD + +IAA I +
Sbjct: 6 RRVVITGLGLVSPLAGDVEYSWKRLLEGKSGVRRITEFDVSDLSCQIAARIPVGDGTNGT 65
Query: 218 FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 277
++ D + K +++D F++Y + A +ALA + + D+ + + G G
Sbjct: 66 YNADLHMESKEQRKVDAFIVYAIAAADQALA----DAEWFPKSDEDQICTGVLIGSGIGG 121
Query: 278 VFYDAIEALRISYK---KMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCI 334
+ + K +++PF +P N+ S +++ G GPN+S+ TAC+T I
Sbjct: 122 IEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGYVSIKYGLRGPNHSVVTACSTGAHAI 181
Query: 335 LNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQ-RNNDPTKASRPWDINRDGF 393
+AA I G+A+VML GG+++ + I L GF ACRALS RN+DP +ASRP+D++RDGF
Sbjct: 182 GDAARLIALGDADVMLAGGTESPINRISLAGFSACRALSTCRNDDPERASRPYDVDRDGF 241
Query: 394 VMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAH 453
VM HAKKRGA+IYAE G + DAYH+T P G G + AL
Sbjct: 242 VMGEGAAIVVLEELEHAKKRGARIYAEIIGYGLSGDAYHITAPSESGEGAQRSMMAALKR 301
Query: 454 SGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVNSTKSMIGHLLXXXXXXX 512
+ V+ +++YINAH TST A D+ E A+ G + ++STKS IGHLL
Sbjct: 302 AQVNVSELDYINAHGTSTMA-DVIELAAVERVLGYYAPQVSMSSTKSSIGHLLGAAGAAE 360
Query: 513 XXXXXXXXRTGWIHPNINLENPDAVVDTNVLVGPKKER 550
R +NLENP ++T + + P K R
Sbjct: 361 AIFCVLAIRDNIAPATLNLENPS--IETKIDLVPHKPR 396
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 206 bits (524), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 136/420 (32%), Positives = 215/420 (51%), Gaps = 34/420 (8%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGI----------------SEIETFDCTSFP 208
+RVVVTG+G+V+PLG + + L++G GI +++ TFD S
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLS-- 58
Query: 209 TKIAAEIKSFSTDGWVAPKL---SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKC 265
+K+AA + S G L SK + F+ Y + A +AL D E +++
Sbjct: 59 SKVAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGV 118
Query: 266 GVLIGSGLGGMKVFYDAIEALRI----SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 321
+ G D +EA ++ ++++PF +P NM S ++M G+ GPN+
Sbjct: 119 SIGGGI-----GSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNH 173
Query: 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPT 380
+ TACAT I +A I G+A+VM+ GG+++++ + + GF RALS + N+ P
Sbjct: 174 AAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQ 233
Query: 381 KASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
+ASRP+D +RDGFV+ HAK+RGAKIYAE G + DA+H+T+P DG
Sbjct: 234 EASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDG 293
Query: 441 VGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR---GLRVNST 497
G +L + +AL SG+ ++Y+NAHATSTP GD E +A+ F ++ L +ST
Sbjct: 294 KGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAFSST 353
Query: 498 KSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENPDAVVDTNVLVGPKKERLEVKAAL 557
K GHLL G +N++NPD + D + +++ V+ A+
Sbjct: 354 KGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLTTSKKMLVRTAM 413
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 129/375 (34%), Positives = 191/375 (50%), Gaps = 15/375 (4%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVV+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 177
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 400
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 178 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
HA RGA IYAE G TSD M P G G + C++ A+ GV
Sbjct: 237 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVA--PSGEGAVRCMKMAM--HGVDTP- 291
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 520
++Y+N+H TSTP GD+KE A+ FG ++ +++TK+M GH L
Sbjct: 292 IDYLNSHGTSTPVGDVKELAAIREVFG-DKSPAISATKAMTGHSLGAAGVQEAIYSLLML 350
Query: 521 RTGWIHPNINLENPD 535
G+I P+IN+E D
Sbjct: 351 EHGFIAPSINIEELD 365
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 178 bits (451), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 190/375 (50%), Gaps = 15/375 (4%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 177
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 400
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 178 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
HA RGA IYAE G TSD M P G G + C++ A+ GV
Sbjct: 237 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVA--PSGEGAVRCMKMAM--HGVDTP- 291
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 520
++Y+N+H TSTP GD+KE A+ FG ++ +++TK+M GH L
Sbjct: 292 IDYLNSHGTSTPVGDVKELAAIREVFG-DKSPAISATKAMTGHSLGAAGVQEAIYSLLML 350
Query: 521 RTGWIHPNINLENPD 535
G+I P+IN+E D
Sbjct: 351 EHGFIAPSINIEELD 365
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 190/375 (50%), Gaps = 15/375 (4%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVV+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 14 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 131 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 189
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 400
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 190 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 248
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
HA RGA IYAE G TSD M P G G + C++ A+ GV
Sbjct: 249 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVA--PSGEGAVRCMKMAM--HGVDTP- 303
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 520
++Y+N+H TSTP GD+KE A+ FG ++ +++T +M GH L
Sbjct: 304 IDYLNSHGTSTPVGDVKELAAIREVFG-DKSPAISATAAMTGHSLGAAGVQEAIYSLLML 362
Query: 521 RTGWIHPNINLENPD 535
G+I P+IN+E D
Sbjct: 363 EHGFIAPSINIEELD 377
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 127/375 (33%), Positives = 190/375 (50%), Gaps = 15/375 (4%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 177
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 400
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 178 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
HA RGA IYAE G TSD M P G G + C++ A+ GV
Sbjct: 237 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVA--PSGEGAVRCMKMAM--HGVDTP- 291
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 520
++Y+N+H TSTP GD+KE A+ FG ++ +++T++M GH L
Sbjct: 292 IDYLNSHGTSTPVGDVKELAAIREVFG-DKSPAISATRAMTGHSLGAAGVQEAIYSLLML 350
Query: 521 RTGWIHPNINLENPD 535
G+I P+IN+E D
Sbjct: 351 EHGFIAPSINIEELD 365
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 175 bits (443), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 127/375 (33%), Positives = 189/375 (50%), Gaps = 15/375 (4%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 14 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 131 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 189
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 400
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 190 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 248
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
HA RGA IYAE G TSD M P G G + C++ A+ GV
Sbjct: 249 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVA--PSGEGAVRCMKMAM--HGVDTP- 303
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 520
++Y+N+ TSTP GD+KE A+ FG ++ +++TK+M GH L
Sbjct: 304 IDYLNSQGTSTPVGDVKELAAIREVFG-DKSPAISATKAMTGHSLGAAGVQEAIYSLLML 362
Query: 521 RTGWIHPNINLENPD 535
G+I P+IN+E D
Sbjct: 363 EHGFIAPSINIEELD 377
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 175 bits (443), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 127/375 (33%), Positives = 189/375 (50%), Gaps = 15/375 (4%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 14 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 131 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 189
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 400
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 190 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 248
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
HA RGA IYAE G TSD M P G G + C++ A+ GV
Sbjct: 249 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVA--PSGEGAVRCMKMAM--HGVDTP- 303
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 520
++Y+N+ TSTP GD+KE A+ FG ++ +++TK+M GH L
Sbjct: 304 IDYLNSEGTSTPVGDVKELAAIREVFG-DKSPAISATKAMTGHSLGAAGVQEAIYSLLML 362
Query: 521 RTGWIHPNINLENPD 535
G+I P+IN+E D
Sbjct: 363 EHGFIAPSINIEELD 377
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 132/400 (33%), Positives = 194/400 (48%), Gaps = 21/400 (5%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTGMG+VS +G + +L E SGIS E + F ++ + D +
Sbjct: 23 RRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQVHG-----APDIDI 77
Query: 225 APKLSKRMDKF----MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
+ +R +F + A +A+AD G+TE+ E+ + G+++GSG +
Sbjct: 78 ESLVDRRAMRFHGRGTAWNHIAMDQAIADAGLTEE---EVSNERTGIIMGSGGPSTRTIV 134
Query: 281 DAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 339
D+ + R K++ PF VP A ++ SA LA G NYSIS+ACATSN CI NA
Sbjct: 135 DSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNAYE 194
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXX 398
I G+ + M GG + + + F A A+S + ND P+ ASR +D NRDGFV+
Sbjct: 195 MIQYGKQDRMFAGGCEDLDWTLSV-LFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGG 253
Query: 399 XXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSR 458
A RGAKIY E G TSD Y M P G G I C++ AL+
Sbjct: 254 AGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVA--PSGEGAIRCMKMALS---TVT 308
Query: 459 EDVNYINAHATSTPAGDIKEYQALIHCFGQNRGL-RVNSTKSMIGHLLXXXXXXXXXXXX 517
++YIN HATSTPAGD E +A+ FG + +TKS+ GH L
Sbjct: 309 SKIDYINPHATSTPAGDAPEIEAIRQIFGAGDVCPPIAATKSLTGHSLGATGVQEAIYSL 368
Query: 518 XXXRTGWIHPNINLENPDAVVDTNVLVGPKKERLEVKAAL 557
+ +I + ++E D +V + + +++ L
Sbjct: 369 LMMQNNFICESAHIEELDPAFADMPIVRKRIDNVQLNTVL 408
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 130/396 (32%), Positives = 191/396 (48%), Gaps = 13/396 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTGMG+VS +G + +L E SGIS E + F ++ + V
Sbjct: 6 RRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQVHGA-PDIDIESLV 64
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+ + + + A +A+AD G+TE+ E+ + G+++GSG + D+ +
Sbjct: 65 DRRAMRFHGRGTAWNHIAMDQAIADAGLTEE---EVSNERTGIIMGSGGPSTRTIVDSAD 121
Query: 285 ALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
R K++ PF VP A ++ SA LA G NYSIS+ACATSN CI NA I
Sbjct: 122 ITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQY 181
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXXXX 402
G+ + M GG + + + F A A+S + ND P+ ASR +D NRDGFV+
Sbjct: 182 GKQDRMFAGGCEDLDWTLSV-LFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVL 240
Query: 403 XXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVN 462
A RGAKIY E G TSD Y M P G G I C++ AL+ ++
Sbjct: 241 VLEDLETALARGAKIYGEIVGYGATSDGYDMVA--PSGEGAIRCMKMALS---TVTSKID 295
Query: 463 YINAHATSTPAGDIKEYQALIHCFGQNRGL-RVNSTKSMIGHLLXXXXXXXXXXXXXXXR 521
YIN HATSTPAGD E +A+ FG + +TKS+ GH L +
Sbjct: 296 YINPHATSTPAGDAPEIEAIRQIFGAGDVCPPIAATKSLTGHSLGATGVQEAIYSLLMMQ 355
Query: 522 TGWIHPNINLENPDAVVDTNVLVGPKKERLEVKAAL 557
+I + ++E D +V + + +++ L
Sbjct: 356 NNFICESAHIEELDPAFADMPIVRKRIDNVQLNTVL 391
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/371 (30%), Positives = 185/371 (49%), Gaps = 11/371 (2%)
Query: 182 PDV--FYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYL 239
PD+ + LL G SGI +E T + +A +I D V + + + M Y+
Sbjct: 27 PDIESTWKGLLAGESGIHALEDEFVTKW--DLAVKIGGHLKDP-VDSHMGRLDMRRMSYV 83
Query: 240 LTAGKKALADGGITEDVMN-ELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFC 297
GK L G + E + E+D + V++G+GLGG + ++ + + +K++P
Sbjct: 84 QRMGK--LLGGQLWESAGSPEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLA 141
Query: 298 VPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357
V N +A++ + LG + +AC++ + I +A I+ G+A+V +CGG +
Sbjct: 142 VQMIMPNGAAAVIGLQLGARAGVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGP 201
Query: 358 VIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKI 417
+ + + F RA+S RN++P +ASRP+D +RDGFV HAK RGAK
Sbjct: 202 IEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKP 261
Query: 418 YAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIK 477
A G TSDA+HM P DGV + ++L +G+S D++++NAH T+TP GD
Sbjct: 262 LARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAA 321
Query: 478 EYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENPDAV 537
E A I G ++ V + KS +GH + R G I P +N E PD
Sbjct: 322 EANA-IRVAGCDQAA-VYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPE 379
Query: 538 VDTNVLVGPKK 548
+D +V+ G +
Sbjct: 380 IDLDVVAGEPR 390
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 168 bits (426), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 178/395 (45%), Gaps = 11/395 (2%)
Query: 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW 223
++RVV+TG+G+ +P G+ F+ L G + I FD + + +++AAE
Sbjct: 2 KRRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEG 61
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK------ 277
P+ RMD+ + + ++A A G+ D LD ++ GV +GS +
Sbjct: 62 FGPRELDRMDRASQFAVACAREAFAASGLDPDT---LDPARVGVSLGSAVAAATSLEREY 118
Query: 278 -VFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN 336
+ D+ + ++ + ++ A +A +G GP +ST C + + N
Sbjct: 119 LLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVGN 178
Query: 337 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMX 396
A I G A+VM G +D + PI + F A RA + RN+DP ASRP+D RDGFV+
Sbjct: 179 AVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTRDGFVLA 238
Query: 397 XXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGV 456
A RGA+I+AE G + +AYHMT DG + I AL S
Sbjct: 239 EGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRT 298
Query: 457 SREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLXXXXXXXXXX 515
D++YINAH + T D E A G++ R V+S KSM+GH L
Sbjct: 299 DATDIDYINAHGSGTRQNDRHETAAYKRALGEHARRTPVSSIKSMVGHSLGAIGSLEIAA 358
Query: 516 XXXXXRTGWIHPNINLENPDAVVDTNVLVGPKKER 550
G + P NL D D + + +ER
Sbjct: 359 CVLALEHGVVPPTANLRTSDPECDLDYVPLEARER 393
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 185/374 (49%), Gaps = 17/374 (4%)
Query: 182 PDV--FYNNLLEGVSGISEIETFDCTSF--PTKIAAEIKSFSTDGWVAPKLSKRMD-KFM 236
PD+ + LL G SGI +E T + KI +K D + R+D + M
Sbjct: 27 PDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKD-PVDSHMG-----RLDMRRM 80
Query: 237 LYLLTAGKKALADGGITEDVMN-ELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMN 294
Y+ GK L G + E + E+D + V++G+GLGG + ++ + + +K++
Sbjct: 81 SYVQRMGK--LLGGQLWESAGSPEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVS 138
Query: 295 PFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGS 354
P V N +A++ + LG + +A ++ + I +A I+ G+A+V +CGG
Sbjct: 139 PLAVQMIMPNGAAAVIGLQLGARAGVMTPVSAQSSGSEAIAHAWRQIVMGDADVAVCGGV 198
Query: 355 DAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRG 414
+ + + + F RA+S RN++P +ASRP+D +RDGFV HAK RG
Sbjct: 199 EGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARG 258
Query: 415 AKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAG 474
AK A G TSDA+HM P DGV + ++L +G+S D++++NAH T+TP G
Sbjct: 259 AKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIG 318
Query: 475 DIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENP 534
D E A I G ++ V + KS +GH + R G I P +N E P
Sbjct: 319 DAAEANA-IRVAGCDQAA-VYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETP 376
Query: 535 DAVVDTNVLVGPKK 548
D +D +V+ G +
Sbjct: 377 DPEIDLDVVAGEPR 390
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 190/375 (50%), Gaps = 15/375 (4%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVV+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 14 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+A ATS CI NA I
Sbjct: 131 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQI 189
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 400
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 190 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 248
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
HA RGA IYAE G TSD M P G G + C++ A+ GV
Sbjct: 249 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVA--PSGEGAVRCMKMAM--HGVDTP- 303
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 520
++Y+N+H TSTP GD+KE A+ FG ++ +++TK+M GH L
Sbjct: 304 IDYLNSHGTSTPVGDVKELAAIREVFG-DKSPAISATKAMTGHSLGAAGVQEAIYSLLML 362
Query: 521 RTGWIHPNINLENPD 535
G+I P+IN+E D
Sbjct: 363 EHGFIAPSINIEELD 377
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 190/375 (50%), Gaps = 15/375 (4%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVV+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+A ATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQI 177
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 400
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 178 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
HA RGA IYAE G TSD M P G G + C++ A+ GV
Sbjct: 237 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVA--PSGEGAVRCMKMAM--HGVDTP- 291
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 520
++Y+N+H TSTP GD+KE A+ FG ++ +++TK+M GH L
Sbjct: 292 IDYLNSHGTSTPVGDVKELAAIREVFG-DKSPAISATKAMTGHSLGAAGVQEAIYSLLML 350
Query: 521 RTGWIHPNINLENPD 535
G+I P+IN+E D
Sbjct: 351 EHGFIAPSINIEELD 365
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 127/375 (33%), Positives = 189/375 (50%), Gaps = 15/375 (4%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+A ATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSAXATSAHCIGNAVEQI 177
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 400
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 178 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
HA RGA IYAE G TSD M P G G + C++ A+ GV
Sbjct: 237 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVA--PSGEGAVRCMKMAM--HGVDTP- 291
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 520
++Y+N+H TSTP GD+KE A+ FG ++ +++TK+M GH L
Sbjct: 292 IDYLNSHGTSTPVGDVKELAAIREVFG-DKSPAISATKAMTGHSLGAAGVQEAIYSLLML 350
Query: 521 RTGWIHPNINLENPD 535
G+I P+IN+E D
Sbjct: 351 EHGFIAPSINIEELD 365
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 155 bits (392), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 120/404 (29%), Positives = 185/404 (45%), Gaps = 26/404 (6%)
Query: 154 VTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISE-----IETFDCTSFP 208
VT K P+ VVVTG+ + + L + + + LL+ SGI +E FD P
Sbjct: 22 VTGKAFPY-----VVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEFD---LP 73
Query: 209 TKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVL 268
+I + D + +RM ++ + G E +D ++ V
Sbjct: 74 VRIGGHLLE-EFDHQLTRIELRRMGYLQRMSTVLSRRLWENAGSPE-----VDTNRLMVS 127
Query: 269 IGSGLGGMK--VF-YDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIST 325
IG+GLG + VF YD + A K ++P V N +A + ++ + +
Sbjct: 128 IGTGLGSAEELVFSYDDMRAR--GMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVS 185
Query: 326 ACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACR-ALSQRNNDPTKASR 384
ACA+ I A I+ GEA+ +CGG + + + + GF R +S N+DP A R
Sbjct: 186 ACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACR 245
Query: 385 PWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVI 444
P+D +RDGFV HAK RGA I A G S TSD +HM P P+G
Sbjct: 246 PFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAG 305
Query: 445 LCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHL 504
I +A+ +G++ D++++NAHAT T GD+ E +A+ + G NR V + KS +GH
Sbjct: 306 HAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGNRPA-VYAPKSALGHS 364
Query: 505 LXXXXXXXXXXXXXXXRTGWIHPNINLENPDAVVDTNVLVGPKK 548
+ R I P +NL N D +D +V+ G +
Sbjct: 365 VGAVGAVESILTVLALRDQVIPPTLNLVNLDPEIDLDVVAGEPR 408
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 175/373 (46%), Gaps = 10/373 (2%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST-DGW 223
KR V+TG+G+VS +G+ +L EG SGI+ + F + + ++K S
Sbjct: 5 KRAVITGLGIVSSIGNNQQEVLASLQEGRSGITFAQEFKDAGXRSHVWGDVKLQSEPKDL 64
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI 283
+ K+ + +Y A ++A+AD G+++ ++ G DA
Sbjct: 65 IDRKVLRFXSDASIYAYLAXQEAIADSGLSDSQVSNFRSGLVVGSGGGSPRNQVAGSDAX 124
Query: 284 EALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
R K + P+ V A + SA LA G NYSIS+ACATS CI +A I
Sbjct: 125 RTPR-GLKGVGPYXVTKAXASGVSACLATPFKIKGVNYSISSACATSAHCIGHALELIQL 183
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXXXX 402
G+ +++ GG + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 184 GKQDIVFAGGGEELCWEXACE-FDAXGALSTKYNDTPAKASRTYDQDRDGFVIAGGGGXV 242
Query: 403 XXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVN 462
HA RGA IYAE G TSD P G G + C + A A GV ++
Sbjct: 243 VVEELEHALARGAHIYAEIVGYGATSDGADXVA--PSGEGAVRCXQXAXA--GVDTP-ID 297
Query: 463 YINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRT 522
Y N H TSTP GD+KE A+ FG N ++STK+ GH L
Sbjct: 298 YXNVHGTSTPVGDVKELGAIREVFGNNT-PAISSTKAXTGHSLGAAGVHEAIFSLLXVEH 356
Query: 523 GWIHPNINLENPD 535
G+I P+IN++N D
Sbjct: 357 GFIAPSINIDNLD 369
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 168/375 (44%), Gaps = 13/375 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFD-CTSFPTKIAAEIKSFSTDGW 223
KRVV+TGMG V+ LG D L G + + + +D S T++AA + F+
Sbjct: 6 KRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQPAD 65
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG---MKVFY 280
K ++ M + +Y + A + ALAD G D + + GV GS G ++ F
Sbjct: 66 WPRKKTRSMGRVSMYAVRASELALADAGFAGD--ESISDGRMGVAYGSSSGSVEPIRAFG 123
Query: 281 DAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+E+ ++ N + T + L DL G S+ACA+ + I A +
Sbjct: 124 TMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDL--KGRIVPTSSACASGSQAIGYAYEN 181
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 400
I G+ +ML GG++ P + F A S RN++P RP+D RDG V+
Sbjct: 182 IAMGKQTLMLAGGAEELSGP-AVAVFDTLYATSTRNDEPHLTPRPFDAKRDGLVVGEGAA 240
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
HAK RGA I+AE G SD HMT+P + ++ AL + +
Sbjct: 241 TLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQPTASTMA--RAMQLALEDAKLDANA 298
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 520
+ Y+NAH TST GD+ E QA FG+ + ++S KS +GH L
Sbjct: 299 IAYVNAHGTSTDRGDVAESQATARTFGER--MPISSLKSYVGHTLGACGALEAWWTIEMM 356
Query: 521 RTGWIHPNINLENPD 535
+ W P +NL D
Sbjct: 357 KRNWYAPTLNLTEVD 371
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 93/377 (24%), Positives = 147/377 (38%), Gaps = 21/377 (5%)
Query: 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW 223
K V++TG+G+V+P G +++ +L+G G+ + FD + +P +A +I F
Sbjct: 8 DKSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDH 67
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI 283
+ +L + D LTA AL D + + + D GV+ + GG +
Sbjct: 68 IPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYD---MGVVTANACGGFDFTHREF 124
Query: 284 EALRISYKKMNPFCVPFA---TTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
L K FA N G +++ G GP+ ++ A L A
Sbjct: 125 RKLWSEGPKSVSVYESFAWFYAVNTG--QISIRHGMRGPSSAL-VAEQAGGLDALGHARR 181
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 400
IR +++ GG D+A+ P G +A +S DP +A P+D G+V
Sbjct: 182 TIRRGTPLVVSGGVDSALDPWGWVSQIASGRIST-ATDPDRAYLPFDERAAGYVPGEGGA 240
Query: 401 XXXXXXXXHAKKRGA-KIYAEFRGGSFTSDAYHMTEPHPDG---VGVILCIEKALAHSGV 456
A+ RG Y E G + T D P P G+ I AL +G
Sbjct: 241 ILVLEDSAAAEARGRHDAYGELAGCASTFD------PAPGSGRPAGLERAIRLALNDAGT 294
Query: 457 SREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXX 516
EDV+ + A P D E +A+ FG+ G+ V K+ G L
Sbjct: 295 GPEDVDVVFADGAGVPELDAAEARAIGRVFGRE-GVPVTVPKTTTGRLYSGGGPLDVVTA 353
Query: 517 XXXXRTGWIHPNINLEN 533
R G I P + +
Sbjct: 354 LMSLREGVIAPTAGVTS 370
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 125/320 (39%), Gaps = 19/320 (5%)
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI 283
V+P+ + MD LL + + + GI + G G LG K Y
Sbjct: 84 VSPREAAAMDPQQRLLLETSWELVENAGIDPHSLR-------GTATGVFLGVAKFGYGED 136
Query: 284 EALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
A + + + + V + S ++ +G GP+ S+ TAC++S + A + +
Sbjct: 137 TA---AAEDVEGYSVTGVAPAVASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRK 193
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXX 403
GE+++ + GG+ P F RAL+ S+ + DGF
Sbjct: 194 GESSMAVVGGAAVMATPGVFVDFSRQRALAADGR-----SKAFGAGADGFGFSEGVTLVL 248
Query: 404 XXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNY 463
A++ G ++ A RG + D P G I +AL G+ DV+
Sbjct: 249 LERLSEARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALESCGLEPGDVDA 308
Query: 464 INAHATSTPAGDIKEYQALIHCFGQNRG----LRVNSTKSMIGHLLXXXXXXXXXXXXXX 519
+ AH T T GD E AL+ +G++R L + S KS IGH
Sbjct: 309 VEAHGTGTALGDPIEANALLDTYGRDRDADRPLWLGSVKSNIGHTQAAAGVTGLLKVVLA 368
Query: 520 XRTGWIHPNINLENPDAVVD 539
R G + +++E P VD
Sbjct: 369 LRNGELPATLHVEEPTPHVD 388
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 85/205 (41%), Gaps = 9/205 (4%)
Query: 303 TNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG 362
+++ S +A LG GP ++ TAC++ + A + R E + L GG P
Sbjct: 175 SSVASGRVAYCLGLEGPAXTVDTACSSGLTALHLAXESLRRDECGLALAGGVTVXSSP-- 232
Query: 363 LGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFR 422
G F R SQ +P+ DGF + A++ G + A R
Sbjct: 233 -GAFTEFR--SQGGLAADGRCKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLR 289
Query: 423 GGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQAL 482
G + D P G I +AL ++GV DV+Y+ AH T T GD E AL
Sbjct: 290 GSAVNQDGASNGLTAPSGPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVHAL 349
Query: 483 IHCFGQNRG----LRVNSTKSMIGH 503
+ +G R L + S KS IGH
Sbjct: 350 LSTYGAERDPDDPLWIGSVKSNIGH 374
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 86/381 (22%), Positives = 144/381 (37%), Gaps = 29/381 (7%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE---TFDCTSFPTKIAA--EIKSFS 219
+ VV+ GM P F++NL+ GV +++ + P + ++ F
Sbjct: 4 EEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAGLYGLPRRSGKLKDLSRFD 63
Query: 220 TDGW-VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIG-SGLGGMK 277
+ V PK + MD + LL +A+ DGGI D L + GV +G SG
Sbjct: 64 ASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPD---SLRGTHTGVWVGVSG----- 115
Query: 278 VFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNA 337
+ EAL + + + + M + L+ + GP+ ++ TAC++S + NA
Sbjct: 116 --SETSEALSRDPETLVGYSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSSLMALQNA 173
Query: 338 ANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXX 397
I G+ + GG + + P F+ LS P + +D +G+
Sbjct: 174 YQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLS-----PEGTCKAFDTAGNGYCRSE 228
Query: 398 XXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAY-HMTEPHPDGVGVILCIEKALAHSGV 456
A+ ++YA +D + P G I +GV
Sbjct: 229 GVVAVLLTKKSLAR----RVYATILNAGTNTDGFKEQGVTFPSGDIQEQLIRSLYQSAGV 284
Query: 457 SREDVNYINAHATSTPAGDIKEYQALIH--CFGQNRGLRVNSTKSMIGHLLXXXXXXXXX 514
+ E YI AH T T GD +E + C + L + STKS +GH
Sbjct: 285 APESFEYIEAHGTGTKVGDPQELNGITRALCATRQEPLLIGSTKSNMGHPEPASGLAALA 344
Query: 515 XXXXXXRTGWIHPNINLENPD 535
G PN++ +P+
Sbjct: 345 KVLLSLEHGLWAPNLHFHSPN 365
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 87/379 (22%), Positives = 142/379 (37%), Gaps = 25/379 (6%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE---TFDCTSFPTKIAA--EIKSFS 219
+ VV+ GM P + F+ NL+ GV ++ + P ++ ++ F
Sbjct: 2 EEVVIAGMSGKLPESENLEEFWANLIGGVDMVTADDRRWKAGLYGLPRRMGKLKDLSRFD 61
Query: 220 TDGW-VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKV 278
+ V K + MD + LL +A+ DGGI L + GV +G
Sbjct: 62 ASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINP---ASLRGTSTGVWVGVSSS---- 114
Query: 279 FYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAA 338
DA EAL + + + + M + L+ + GP+ +I TAC++S + +A
Sbjct: 115 --DASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDFKGPSITIDTACSSSLLALQSAY 172
Query: 339 NHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXX 398
I GE + + GG + + P F+ LSQ R +D G+
Sbjct: 173 QAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLSQDGT-----CRSFDAEGTGYCRAEA 227
Query: 399 XXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSR 458
A++ A I G+ T + P G I A +G
Sbjct: 228 VVAVLLTKKSLARRVYATI---LNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDP 284
Query: 459 EDVNYINAHATSTPAGDIKEYQALIH--CFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXX 516
E + YI AH T T GD +E +++ C + L + STKS +GH
Sbjct: 285 ESLEYIEAHGTGTKVGDPQELNGIVNALCATRREPLLIGSTKSNMGHPEPASGVAALIKV 344
Query: 517 XXXXRTGWIHPNINLENPD 535
G PN++ P+
Sbjct: 345 LLSLEHGVWAPNLHYHTPN 363
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/357 (22%), Positives = 139/357 (38%), Gaps = 22/357 (6%)
Query: 197 SEIETFDCTSFPTKIAAEIKS-FSTDGW-VAPKLSKRMDKFMLYLLTAGKKALADGGIT- 253
+EI T + A+I + F W ++P ++ +D+ L+ + A A G T
Sbjct: 2607 TEIRVPRKTKLSRTVGAQIPTGFDPTVWGISPDMASSIDRVALWNIVATVDAFLSSGFTP 2666
Query: 254 EDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313
++M + S+ G+G+GGM + K N + + ++
Sbjct: 2667 TELMRWVHPSQVASTQGTGMGGMTSMQTMYHGNLLGRAKPNDILQEVLPNVVAAHVMQSY 2726
Query: 314 LGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP--IGLGGFVAC-- 369
+G G ACAT+ + + I G+A++++ GG D + IG G A
Sbjct: 2727 VGGYGAMVHPVGACATAAVSVEEGVDKIKLGKADLVIAGGFDDLTLEAIIGFGDMAATAD 2786
Query: 370 -RALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTS 428
+ + +K SR D R GF+ A K G + A +
Sbjct: 2787 TEMMRAKGISDSKFSRANDRRRLGFLEAQGGGTILLARGDLALKMGLPVLAVVGYAQSFA 2846
Query: 429 DAYHMTEPHPDGVGVI--------LCIEKALAHSGVSREDVNYINAHATSTPAGDIKE-- 478
D H + P P G+G + + ++LA GV +D+ I+ H TST A D E
Sbjct: 2847 DGVHTSIPAP-GLGALGAARGGRESTLARSLAQLGVGADDIAVISKHDTSTLANDPNETE 2905
Query: 479 -YQALIHCFGQNRG--LRVNSTKSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLE 532
++ + G+ G L + S K++ GH R G I PN +L+
Sbjct: 2906 LHERIADSMGRAPGNPLFIVSQKTLTGHAKGGAAVFQMMGLCQILRDGVIPPNRSLD 2962
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 104/260 (40%), Gaps = 34/260 (13%)
Query: 206 SFPTKIAAEIKSFSTDGW------VAPKLSKRMDKFMLYLLTAGKKALADGGITE--DVM 257
F +A +I + GW V + +++D LY+L + +AL GIT+ +
Sbjct: 1155 QFDRLVAGQIPT----GWDARRYGVPEDIIQQVDPVTLYVLVSVAEALLSSGITDPYEFY 1210
Query: 258 NELDKSKCGVLIGSGLGGMKVFYDAIEALRISYK--------KMNPFCVPFATTNMGSAM 309
+ S+ G IGSG+GG ALR YK + + F T M + +
Sbjct: 1211 KYVHLSEVGNCIGSGVGGTS-------ALRGMYKDRYLDKPVQKDILQESFVNT-MAAWV 1262
Query: 310 LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSD-----AAVIPIGLG 364
+ L GP + ACAT+ + + I++G+A V L GG D + +G
Sbjct: 1263 NMLLLSSTGPIKTPVGACATAVESLDVGYDTIMQGKARVCLVGGFDDFQEEGSYEFANMG 1322
Query: 365 GFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGG 424
+ R +P + SRP R+GF+ A + G IY
Sbjct: 1323 ATSNAKEEFARGREPGEMSRPTSTTRNGFMESQGCGVQVIMTAQLALEMGVPIYGIVAMT 1382
Query: 425 SFTSDAYHMTEPHPDGVGVI 444
S +D + P P G GV+
Sbjct: 1383 STATDKIGRSVPAP-GQGVL 1401
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 97/244 (39%), Gaps = 30/244 (12%)
Query: 222 GW------VAPKLSKRMDKFMLYLLTAGKKALADGGITE--DVMNELDKSKCGVLIGSGL 273
GW ++ + ++D L++L + +A GIT+ ++ + S+ G GSG+
Sbjct: 1192 GWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGM 1251
Query: 274 GGMKVFYDAIEALRISYK---KMNPF---CVPFATTNMGSAMLAMDL-GWMGPNYSISTA 326
GG + ALR +K K P + + N SA + M L GP + A
Sbjct: 1252 GG-------VSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGA 1304
Query: 327 CATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS------QRNNDPT 380
CATS + I+ G+A + + GG D G F +A S + P
Sbjct: 1305 CATSVESVDIGVETILSGKARICIVGGYD-DFQEEGSFEFGNMKATSNTLEEFEHGRTPA 1363
Query: 381 KASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
+ SRP R+GF+ A K G IY + +D + P P G
Sbjct: 1364 EMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAP-G 1422
Query: 441 VGVI 444
G++
Sbjct: 1423 KGIL 1426
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 97/244 (39%), Gaps = 30/244 (12%)
Query: 222 GW------VAPKLSKRMDKFMLYLLTAGKKALADGGITE--DVMNELDKSKCGVLIGSGL 273
GW ++ + ++D L++L + +A GIT+ ++ + S+ G GSG+
Sbjct: 1192 GWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGM 1251
Query: 274 GGMKVFYDAIEALRISYK---KMNPF---CVPFATTNMGSAMLAMDL-GWMGPNYSISTA 326
GG + ALR +K K P + + N SA + M L GP + A
Sbjct: 1252 GG-------VSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGA 1304
Query: 327 CATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS------QRNNDPT 380
CATS + I+ G+A + + GG D G F +A S + P
Sbjct: 1305 CATSVESVDIGVETILSGKARICIVGGYD-DFQEEGSFEFGNMKATSNTLEEFEHGRTPA 1363
Query: 381 KASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
+ SRP R+GF+ A K G IY + +D + P P G
Sbjct: 1364 EMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAP-G 1422
Query: 441 VGVI 444
G++
Sbjct: 1423 KGIL 1426
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 97/244 (39%), Gaps = 30/244 (12%)
Query: 222 GW------VAPKLSKRMDKFMLYLLTAGKKALADGGITE--DVMNELDKSKCGVLIGSGL 273
GW ++ + ++D L++L + +A GIT+ ++ + S+ G GSG+
Sbjct: 993 GWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGM 1052
Query: 274 GGMKVFYDAIEALRISYK---KMNPF---CVPFATTNMGSAMLAMDL-GWMGPNYSISTA 326
GG + ALR +K K P + + N SA + M L GP + A
Sbjct: 1053 GG-------VSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGA 1105
Query: 327 CATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS------QRNNDPT 380
CATS + I+ G+A + + GG D G F +A S + P
Sbjct: 1106 CATSVESVDIGVETILSGKARICIVGGYD-DFQEEGSFEFGNMKATSNTLEEFEHGRTPA 1164
Query: 381 KASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
+ SRP R+GF+ A K G IY + +D + P P G
Sbjct: 1165 EMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAP-G 1223
Query: 441 VGVI 444
G++
Sbjct: 1224 KGIL 1227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,280,793
Number of Sequences: 62578
Number of extensions: 518108
Number of successful extensions: 1051
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 50
length of query: 576
length of database: 14,973,337
effective HSP length: 104
effective length of query: 472
effective length of database: 8,465,225
effective search space: 3995586200
effective search space used: 3995586200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)